Query 004069
Match_columns 775
No_of_seqs 624 out of 3746
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 13:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.3E-37 4.4E-42 329.9 26.7 247 191-457 17-264 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.4E-37 4.7E-42 331.0 24.0 252 190-456 35-290 (292)
3 1b7f_A Protein (SXL-lethal pro 99.9 4.7E-27 1.6E-31 228.0 18.3 166 195-451 2-167 (168)
4 1fxl_A Paraneoplastic encephal 99.9 1.4E-26 4.8E-31 224.1 19.9 164 196-450 2-165 (167)
5 1l3k_A Heterogeneous nuclear r 99.9 1.4E-26 4.7E-31 230.7 18.6 173 194-457 11-183 (196)
6 2qfj_A FBP-interacting repress 99.9 1.4E-26 4.9E-31 234.3 16.4 180 194-455 26-205 (216)
7 4f02_A Polyadenylate-binding p 99.9 6.6E-27 2.3E-31 236.6 13.5 180 195-382 14-201 (213)
8 4f02_A Polyadenylate-binding p 99.9 3.6E-26 1.2E-30 231.3 16.4 168 274-456 13-180 (213)
9 3md3_A Nuclear and cytoplasmic 99.9 1.3E-25 4.6E-30 216.9 18.5 164 277-454 1-164 (166)
10 2cjk_A Nuclear polyadenylated 99.9 5.4E-26 1.9E-30 220.3 13.5 155 195-443 2-156 (167)
11 3nmr_A Cugbp ELAV-like family 99.9 3.2E-25 1.1E-29 216.4 18.9 169 275-451 2-173 (175)
12 3nmr_A Cugbp ELAV-like family 99.9 2.5E-25 8.6E-30 217.1 16.2 162 195-360 2-175 (175)
13 3md3_A Nuclear and cytoplasmic 99.9 9.9E-25 3.4E-29 210.8 15.7 157 197-360 1-165 (166)
14 2yh0_A Splicing factor U2AF 65 99.9 2.6E-24 8.8E-29 214.6 18.4 181 195-457 3-194 (198)
15 3tyt_A Heterogeneous nuclear r 99.9 1.2E-24 4E-29 218.2 15.0 164 275-451 3-201 (205)
16 1fje_B Nucleolin RBD12, protei 99.9 7.1E-25 2.4E-29 214.3 10.4 164 193-456 10-173 (175)
17 2g4b_A Splicing factor U2AF 65 99.9 5.4E-24 1.8E-28 207.2 16.1 152 275-442 3-163 (172)
18 3pgw_A U1-A; protein-RNA compl 99.9 1.3E-23 4.5E-28 221.9 19.9 238 194-442 7-272 (282)
19 3tyt_A Heterogeneous nuclear r 99.9 3.1E-23 1.1E-27 207.8 15.4 156 195-358 3-203 (205)
20 2g4b_A Splicing factor U2AF 65 99.9 4.4E-23 1.5E-27 200.7 15.6 152 195-359 3-171 (172)
21 3sde_A Paraspeckle component 1 99.9 4.2E-23 1.4E-27 215.4 16.2 160 194-363 20-180 (261)
22 2adc_A Polypyrimidine tract-bi 99.9 1.5E-22 5E-27 207.1 18.6 166 271-456 29-227 (229)
23 3sde_A Paraspeckle component 1 99.9 3.9E-23 1.3E-27 215.7 14.4 158 275-456 21-178 (261)
24 3smz_A Protein raver-1, ribonu 99.9 2.9E-22 9.8E-27 211.8 17.1 163 195-364 94-266 (284)
25 1qm9_A Polypyrimidine tract-bi 99.9 4.9E-22 1.7E-26 198.3 16.1 153 276-444 3-188 (198)
26 2adc_A Polypyrimidine tract-bi 99.9 6.4E-22 2.2E-26 202.3 16.9 155 194-362 32-228 (229)
27 1qm9_A Polypyrimidine tract-bi 99.9 7.1E-22 2.4E-26 197.1 13.2 153 196-362 3-197 (198)
28 2ghp_A U4/U6 snRNA-associated 99.9 4.3E-22 1.5E-26 211.3 12.3 160 195-361 116-290 (292)
29 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-18 3.9E-23 167.4 15.6 142 308-456 3-149 (158)
30 3pgw_S U1-70K; protein-RNA com 99.8 2.7E-18 9.1E-23 191.0 15.9 82 371-456 100-181 (437)
31 4fxv_A ELAV-like protein 1; RN 99.7 4.1E-17 1.4E-21 143.3 10.1 81 372-456 18-98 (99)
32 4f25_A Polyadenylate-binding p 99.7 2E-17 6.7E-22 149.7 7.9 96 195-292 4-113 (115)
33 2i2y_A Fusion protein consists 99.7 5.9E-17 2E-21 153.9 10.2 119 317-444 9-139 (150)
34 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.3E-16 4.6E-21 152.5 11.3 83 371-457 37-119 (156)
35 3q2s_C Cleavage and polyadenyl 99.7 1.1E-17 3.7E-22 170.2 2.6 73 373-445 68-142 (229)
36 4fxv_A ELAV-like protein 1; RN 99.7 1.5E-16 5E-21 139.7 9.0 83 193-275 16-98 (99)
37 3s8s_A Histone-lysine N-methyl 99.6 7.9E-16 2.7E-20 137.7 10.4 71 372-442 5-75 (110)
38 1whw_A Hypothetical protein ri 99.6 1.7E-15 5.9E-20 132.9 11.8 82 372-457 7-88 (99)
39 3ex7_B RNA-binding protein 8A; 99.6 1E-15 3.5E-20 140.8 10.6 81 371-453 20-100 (126)
40 2lea_A Serine/arginine-rich sp 99.6 3.6E-16 1.2E-20 145.5 7.5 114 322-444 5-118 (135)
41 2dnz_A Probable RNA-binding pr 99.6 1.5E-15 5.1E-20 132.2 11.0 73 372-444 4-76 (95)
42 2lxi_A RNA-binding protein 10; 99.6 2.8E-16 9.7E-21 135.6 6.3 80 374-457 2-83 (91)
43 1u6f_A Tcubp1, RNA-binding pro 99.6 1.8E-15 6.2E-20 141.6 12.2 83 371-457 40-122 (139)
44 2kn4_A Immunoglobulin G-bindin 99.6 9.8E-16 3.4E-20 146.8 10.5 132 225-364 2-152 (158)
45 2cqd_A RNA-binding region cont 99.6 3.3E-15 1.1E-19 135.2 13.4 81 371-456 15-95 (116)
46 1rk8_A CG8781-PA, CG8781-PA pr 99.6 8.3E-16 2.8E-20 148.4 9.9 116 326-442 11-141 (165)
47 1x5t_A Splicing factor 3B subu 99.6 1.3E-15 4.4E-20 132.9 9.4 82 372-457 4-86 (96)
48 2div_A TRNA selenocysteine ass 99.6 1.3E-15 4.5E-20 133.7 9.5 86 372-457 8-94 (99)
49 2fy1_A RNA-binding motif prote 99.6 2.2E-15 7.6E-20 136.3 11.2 72 372-444 6-77 (116)
50 2dgo_A Cytotoxic granule-assoc 99.6 8.6E-15 3E-19 132.2 14.6 83 371-457 13-95 (115)
51 2cq0_A Eukaryotic translation 99.6 2.2E-15 7.5E-20 133.3 9.9 83 371-457 13-95 (103)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2E-15 6.9E-20 133.2 9.7 84 371-458 10-93 (102)
53 3md1_A Nuclear and cytoplasmic 99.6 3.6E-15 1.2E-19 126.2 10.5 79 374-456 2-80 (83)
54 2dgs_A DAZ-associated protein 99.6 3.8E-15 1.3E-19 130.7 10.9 73 371-444 8-80 (99)
55 2cpz_A CUG triplet repeat RNA- 99.6 5.2E-15 1.8E-19 133.7 11.8 82 372-457 24-105 (115)
56 2dnm_A SRP46 splicing factor; 99.6 2.2E-15 7.5E-20 133.2 9.2 73 371-443 11-83 (103)
57 2lkz_A RNA-binding protein 5; 99.6 8.4E-16 2.9E-20 133.4 6.3 79 373-455 9-93 (95)
58 1x5u_A Splicing factor 3B subu 99.6 5E-15 1.7E-19 131.4 11.4 73 371-443 13-85 (105)
59 2do4_A Squamous cell carcinoma 99.6 6.7E-15 2.3E-19 129.4 11.7 82 371-457 15-96 (100)
60 1x4c_A Splicing factor, argini 99.6 9.2E-15 3.1E-19 130.5 12.7 81 371-458 13-94 (108)
61 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.6E-15 1.6E-19 126.7 10.2 71 372-442 5-75 (87)
62 1x5s_A Cold-inducible RNA-bind 99.6 6.2E-15 2.1E-19 130.0 11.2 74 371-444 10-83 (102)
63 3s8s_A Histone-lysine N-methyl 99.6 3.3E-15 1.1E-19 133.7 9.5 81 195-275 5-85 (110)
64 2cpf_A RNA binding motif prote 99.6 4.6E-15 1.6E-19 129.9 10.3 82 372-457 4-88 (98)
65 1x4h_A RNA-binding protein 28; 99.6 9.9E-15 3.4E-19 130.9 12.5 83 371-457 13-101 (111)
66 2x1f_A MRNA 3'-END-processing 99.6 5.5E-15 1.9E-19 128.9 10.4 80 373-456 2-81 (96)
67 2cqc_A Arginine/serine-rich sp 99.6 9E-15 3.1E-19 127.2 11.6 81 371-455 13-93 (95)
68 2cph_A RNA binding motif prote 99.6 8.9E-15 3E-19 130.2 11.8 73 371-443 13-87 (107)
69 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.4E-15 1.5E-19 126.3 9.3 72 371-442 5-76 (85)
70 2d9p_A Polyadenylate-binding p 99.6 7E-15 2.4E-19 130.0 10.9 71 371-443 13-83 (103)
71 2dgu_A Heterogeneous nuclear r 99.6 1.4E-14 4.8E-19 128.1 12.7 76 371-458 9-84 (103)
72 1wi8_A EIF-4B, eukaryotic tran 99.6 9E-15 3.1E-19 129.6 11.4 81 371-457 13-94 (104)
73 2cpe_A RNA-binding protein EWS 99.6 6.6E-15 2.2E-19 132.5 10.3 83 371-457 13-103 (113)
74 3ns6_A Eukaryotic translation 99.6 2.7E-15 9.3E-20 131.9 7.6 70 373-442 6-81 (100)
75 2dng_A Eukaryotic translation 99.6 1E-14 3.4E-19 129.0 11.2 81 371-457 13-93 (103)
76 2dgp_A Bruno-like 4, RNA bindi 99.6 9.4E-15 3.2E-19 129.9 11.1 82 371-452 11-93 (106)
77 2e5h_A Zinc finger CCHC-type a 99.6 1E-14 3.5E-19 126.6 10.9 72 371-442 14-85 (94)
78 3p5t_L Cleavage and polyadenyl 99.6 1.7E-15 5.8E-20 130.5 5.9 71 374-444 2-74 (90)
79 2lkz_A RNA-binding protein 5; 99.6 1.3E-15 4.4E-20 132.2 5.1 80 196-275 9-94 (95)
80 1oo0_B CG8781-PA, drosophila Y 99.6 8.7E-15 3E-19 131.1 10.5 82 371-456 24-105 (110)
81 1x4b_A Heterogeneous nuclear r 99.6 9.8E-15 3.3E-19 132.1 10.9 83 370-457 24-106 (116)
82 3ucg_A Polyadenylate-binding p 99.6 8.8E-15 3E-19 125.6 9.8 81 372-457 5-85 (89)
83 4f25_A Polyadenylate-binding p 99.6 7.8E-15 2.7E-19 132.5 9.8 78 373-456 5-82 (115)
84 2dnh_A Bruno-like 5, RNA bindi 99.6 2.1E-14 7.2E-19 127.3 12.4 80 372-452 14-94 (105)
85 1p27_B RNA-binding protein 8A; 99.6 1.5E-14 5E-19 128.6 11.2 81 371-453 21-101 (106)
86 2dhg_A TRNA selenocysteine ass 99.6 1.2E-14 4E-19 128.8 10.5 80 372-456 8-89 (104)
87 3lqv_A PRE-mRNA branch site pr 99.6 4.9E-15 1.7E-19 133.8 8.1 103 195-302 7-109 (115)
88 3q2s_C Cleavage and polyadenyl 99.6 3E-15 1E-19 152.2 7.4 79 195-273 67-147 (229)
89 2lxi_A RNA-binding protein 10; 99.6 1.5E-15 5.3E-20 131.0 4.5 81 197-277 2-84 (91)
90 2do0_A HnRNP M, heterogeneous 99.6 3E-14 1E-18 128.3 13.2 71 371-442 13-83 (114)
91 1s79_A Lupus LA protein; RRM, 99.6 1.1E-14 3.9E-19 128.4 10.1 78 372-451 10-87 (103)
92 2dh8_A DAZ-associated protein 99.6 1.7E-14 5.9E-19 127.9 11.3 83 371-458 14-96 (105)
93 2kxn_B Transformer-2 protein h 99.6 1E-14 3.5E-19 134.4 10.0 82 371-456 44-125 (129)
94 2jrs_A RNA-binding protein 39; 99.6 1.6E-14 5.5E-19 128.8 10.9 74 371-444 24-97 (108)
95 1x4a_A Splicing factor, argini 99.5 3E-14 1E-18 127.3 12.5 80 371-457 20-99 (109)
96 3p5t_L Cleavage and polyadenyl 99.5 3.3E-15 1.1E-19 128.6 5.9 80 197-276 2-83 (90)
97 2la6_A RNA-binding protein FUS 99.5 1.9E-14 6.5E-19 126.2 10.6 75 371-445 11-93 (99)
98 4a8x_A RNA-binding protein wit 99.5 9.9E-15 3.4E-19 124.9 8.5 80 373-456 4-84 (88)
99 2cq3_A RNA-binding protein 9; 99.5 4.8E-14 1.6E-18 124.6 13.0 81 371-457 13-93 (103)
100 2dnz_A Probable RNA-binding pr 99.5 2E-14 6.8E-19 125.0 10.2 82 195-276 4-85 (95)
101 2cq0_A Eukaryotic translation 99.5 1.5E-14 5.1E-19 127.9 9.5 83 194-276 13-95 (103)
102 1sjq_A Polypyrimidine tract-bi 99.5 1.9E-14 6.6E-19 126.2 10.1 78 371-458 14-93 (105)
103 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.3E-14 1.1E-18 125.7 11.7 81 371-457 13-93 (103)
104 3md1_A Nuclear and cytoplasmic 99.5 1.6E-14 5.6E-19 122.1 9.3 80 197-276 2-81 (83)
105 2x1f_A MRNA 3'-END-processing 99.5 1E-14 3.5E-19 127.1 8.1 87 196-282 2-88 (96)
106 2dgv_A HnRNP M, heterogeneous 99.5 2.2E-14 7.5E-19 123.9 9.9 79 372-456 7-85 (92)
107 3beg_B Splicing factor, argini 99.5 1.4E-14 4.8E-19 130.8 8.9 78 372-456 15-93 (115)
108 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.4E-14 4.7E-19 123.8 8.4 81 195-275 5-85 (87)
109 3ns6_A Eukaryotic translation 99.5 6.3E-15 2.2E-19 129.5 6.0 80 195-274 5-91 (100)
110 2ywk_A Putative RNA-binding pr 99.5 2.6E-14 8.8E-19 124.3 9.8 71 371-442 14-84 (95)
111 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.4E-14 4.7E-19 123.2 7.8 80 194-273 5-84 (85)
112 3n9u_C Cleavage and polyadenyl 99.5 1.8E-14 6.1E-19 137.3 9.5 71 372-442 54-126 (156)
113 2cqg_A TDP-43, TAR DNA-binding 99.5 8.2E-14 2.8E-18 123.1 12.9 81 371-457 13-93 (103)
114 1whw_A Hypothetical protein ri 99.5 1.9E-14 6.4E-19 126.2 8.7 84 194-277 6-89 (99)
115 2cqp_A RNA-binding protein 12; 99.5 1.3E-14 4.5E-19 126.9 7.7 71 372-442 14-84 (98)
116 2dgs_A DAZ-associated protein 99.5 3.3E-14 1.1E-18 124.7 10.2 82 194-276 8-89 (99)
117 3r27_A HnRNP L, heterogeneous 99.5 3E-14 1E-18 123.8 9.6 76 371-456 19-96 (100)
118 2dgx_A KIAA0430 protein; RRM d 99.5 3.9E-14 1.3E-18 123.4 10.5 78 372-456 8-89 (96)
119 3ulh_A THO complex subunit 4; 99.5 2.8E-14 9.6E-19 127.0 9.7 72 371-443 27-98 (107)
120 2khc_A Testis-specific RNP-typ 99.5 2.2E-14 7.4E-19 130.2 9.0 74 371-444 38-111 (118)
121 1wez_A HnRNP H', FTP-3, hetero 99.5 1.1E-14 3.7E-19 128.4 6.8 70 372-444 14-83 (102)
122 1x5u_A Splicing factor 3B subu 99.5 2.3E-14 7.7E-19 127.1 8.9 83 194-276 13-95 (105)
123 2jwn_A Embryonic polyadenylate 99.5 2.5E-14 8.5E-19 131.0 9.4 81 371-456 34-114 (124)
124 2i2y_A Fusion protein consists 99.5 1.8E-14 6.2E-19 136.7 8.7 117 234-362 9-148 (150)
125 1x4e_A RNA binding motif, sing 99.5 2.6E-14 8.8E-19 121.5 8.8 81 194-274 3-83 (85)
126 2dnm_A SRP46 splicing factor; 99.5 1.6E-14 5.5E-19 127.7 7.7 83 194-276 11-93 (103)
127 1p1t_A Cleavage stimulation fa 99.5 1.8E-14 6.1E-19 127.6 7.9 74 371-444 6-79 (104)
128 2cqc_A Arginine/serine-rich sp 99.5 2.3E-14 8E-19 124.5 8.5 81 195-275 14-94 (95)
129 2dgo_A Cytotoxic granule-assoc 99.5 3.2E-14 1.1E-18 128.4 9.7 83 194-276 13-95 (115)
130 2cq4_A RNA binding motif prote 99.5 1.8E-14 6.1E-19 129.9 7.8 81 371-456 23-103 (114)
131 1x4d_A Matrin 3; structural ge 99.5 2.8E-14 9.4E-19 125.2 8.8 75 372-456 14-91 (102)
132 2e5h_A Zinc finger CCHC-type a 99.5 2.3E-14 7.8E-19 124.3 8.2 80 194-273 14-93 (94)
133 1x4e_A RNA binding motif, sing 99.5 8.3E-15 2.8E-19 124.6 5.2 71 372-442 4-74 (85)
134 1s79_A Lupus LA protein; RRM, 99.5 1.8E-14 6.1E-19 127.2 7.4 78 194-273 9-86 (103)
135 2cpz_A CUG triplet repeat RNA- 99.5 2.6E-14 8.8E-19 129.1 8.5 82 195-276 24-105 (115)
136 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.9E-14 6.5E-19 138.8 8.0 82 194-275 70-151 (165)
137 2rs2_A Musashi-1, RNA-binding 99.5 5.1E-14 1.7E-18 125.8 10.2 81 371-456 23-103 (109)
138 1x5s_A Cold-inducible RNA-bind 99.5 1.9E-14 6.5E-19 126.9 7.3 83 194-276 10-92 (102)
139 2krb_A Eukaryotic translation 99.5 2.1E-14 7.1E-19 121.0 7.2 68 374-443 2-75 (81)
140 3s7r_A Heterogeneous nuclear r 99.5 4.9E-14 1.7E-18 120.4 9.6 71 371-442 9-79 (87)
141 2lcw_A RNA-binding protein FUS 99.3 1.5E-15 5E-20 137.6 0.0 83 371-457 5-95 (116)
142 2wbr_A GW182, gawky, LD47780P; 99.5 3.5E-14 1.2E-18 118.8 8.3 73 195-273 6-78 (89)
143 3ucg_A Polyadenylate-binding p 99.5 4.1E-14 1.4E-18 121.3 9.1 80 196-276 6-85 (89)
144 1p27_B RNA-binding protein 8A; 99.5 3.8E-14 1.3E-18 125.9 9.2 82 194-275 21-102 (106)
145 2mss_A Protein (musashi1); RNA 99.5 2.3E-14 7.9E-19 118.7 7.2 70 375-445 1-70 (75)
146 2hvz_A Splicing factor, argini 99.5 1.8E-14 6.2E-19 126.8 6.9 84 197-285 1-100 (101)
147 2ek1_A RNA-binding protein 12; 99.5 1.5E-14 5.1E-19 125.8 6.2 71 372-442 14-84 (95)
148 1x5t_A Splicing factor 3B subu 99.5 2.2E-14 7.5E-19 125.0 7.3 83 194-276 3-86 (96)
149 2cpd_A Apobec-1 stimulating pr 99.5 1.4E-13 4.7E-18 120.7 12.4 79 368-458 10-90 (99)
150 2cpf_A RNA binding motif prote 99.5 2.8E-14 9.5E-19 124.9 7.9 82 195-276 4-88 (98)
151 2fc8_A NCL protein; structure 99.5 7.1E-14 2.4E-18 123.2 10.5 80 371-457 13-92 (102)
152 2do4_A Squamous cell carcinoma 99.5 4.2E-14 1.4E-18 124.2 9.0 82 194-276 15-96 (100)
153 1x5o_A RNA binding motif, sing 99.5 5.9E-14 2E-18 126.4 10.1 84 372-456 24-111 (114)
154 2cq1_A PTB-like protein L; RRM 99.5 1.2E-13 4E-18 121.2 11.7 77 371-457 13-91 (101)
155 2cpi_A CCR4-NOT transcription 99.5 4.4E-14 1.5E-18 126.7 9.1 82 372-457 14-101 (111)
156 2wbr_A GW182, gawky, LD47780P; 99.5 4.5E-14 1.5E-18 118.2 8.4 64 373-442 7-70 (89)
157 2cph_A RNA binding motif prote 99.5 4.4E-14 1.5E-18 125.7 9.0 84 194-277 13-98 (107)
158 2kxn_B Transformer-2 protein h 99.5 4.3E-14 1.5E-18 130.2 9.1 83 194-276 44-126 (129)
159 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.8E-14 6.2E-19 127.0 6.4 82 195-276 11-92 (102)
160 1x4h_A RNA-binding protein 28; 99.5 4.2E-14 1.4E-18 126.7 8.8 83 194-276 13-101 (111)
161 2jrs_A RNA-binding protein 39; 99.5 4.8E-14 1.6E-18 125.7 9.1 83 194-276 24-106 (108)
162 2fc9_A NCL protein; structure 99.5 9E-14 3.1E-18 122.3 10.8 79 371-457 13-91 (101)
163 2div_A TRNA selenocysteine ass 99.5 4.4E-14 1.5E-18 123.9 8.6 83 194-276 7-94 (99)
164 2ywk_A Putative RNA-binding pr 99.5 4.8E-14 1.6E-18 122.6 8.7 80 194-274 14-93 (95)
165 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.9E-14 6.6E-19 126.4 6.3 72 371-444 17-89 (100)
166 2la6_A RNA-binding protein FUS 99.5 4.6E-14 1.6E-18 123.8 8.6 80 194-273 11-98 (99)
167 2d9p_A Polyadenylate-binding p 99.5 5.8E-14 2E-18 124.0 9.3 80 195-276 14-93 (103)
168 2hgn_A Heterogeneous nuclear r 99.5 1E-14 3.5E-19 135.7 4.4 71 371-444 44-114 (139)
169 1why_A Hypothetical protein ri 99.5 9.4E-14 3.2E-18 121.2 10.4 78 371-456 15-92 (97)
170 2dhg_A TRNA selenocysteine ass 99.5 7.7E-14 2.6E-18 123.4 9.9 82 194-276 7-90 (104)
171 1wex_A Hypothetical protein (r 99.5 1.5E-13 5.1E-18 121.3 11.6 66 371-442 13-80 (104)
172 2m2b_A RNA-binding protein 10; 99.5 3.3E-14 1.1E-18 131.6 7.7 73 371-444 21-99 (131)
173 2dng_A Eukaryotic translation 99.5 6.8E-14 2.3E-18 123.6 9.4 80 195-276 14-93 (103)
174 2dgp_A Bruno-like 4, RNA bindi 99.5 3.8E-14 1.3E-18 125.9 7.7 83 194-276 11-96 (106)
175 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.2E-14 7.5E-19 119.4 5.8 71 374-445 1-71 (77)
176 3s7r_A Heterogeneous nuclear r 99.5 4.8E-14 1.6E-18 120.4 8.0 80 193-273 8-87 (87)
177 2dnq_A RNA-binding protein 4B; 99.5 1.2E-13 4.1E-18 118.8 10.5 73 372-456 7-79 (90)
178 2dgw_A Probable RNA-binding pr 99.5 7.7E-14 2.6E-18 120.2 9.3 78 372-456 9-86 (91)
179 2fy1_A RNA-binding motif prote 99.5 5.8E-14 2E-18 126.9 8.9 82 194-276 5-86 (116)
180 2khc_A Testis-specific RNP-typ 99.5 4.7E-14 1.6E-18 127.9 8.2 80 194-273 38-117 (118)
181 2mss_A Protein (musashi1); RNA 99.5 2.6E-14 8.9E-19 118.4 5.9 75 198-273 1-75 (75)
182 1wi8_A EIF-4B, eukaryotic tran 99.5 6.4E-14 2.2E-18 124.0 8.8 80 195-276 14-94 (104)
183 2dnp_A RNA-binding protein 14; 99.5 1.2E-13 4.1E-18 118.8 10.2 75 371-457 7-81 (90)
184 2cpy_A RNA-binding protein 12; 99.5 1.3E-14 4.5E-19 130.8 4.3 70 371-442 13-83 (114)
185 2dnh_A Bruno-like 5, RNA bindi 99.5 8.6E-14 2.9E-18 123.4 9.4 82 194-276 13-97 (105)
186 2cpe_A RNA-binding protein EWS 99.5 4.7E-14 1.6E-18 126.9 7.9 83 194-276 13-103 (113)
187 3n9u_C Cleavage and polyadenyl 99.5 4.9E-14 1.7E-18 134.2 8.3 80 195-274 54-135 (156)
188 1sjq_A Polypyrimidine tract-bi 99.5 8.2E-14 2.8E-18 122.2 9.1 78 193-276 13-92 (105)
189 2cqd_A RNA-binding region cont 99.5 6.6E-14 2.3E-18 126.6 8.8 81 194-275 15-95 (116)
190 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.2E-13 7.4E-18 127.4 12.6 74 369-442 59-132 (140)
191 2dis_A Unnamed protein product 99.5 1.1E-13 3.9E-18 123.5 10.2 72 372-443 7-82 (109)
192 3ex7_B RNA-binding protein 8A; 99.5 5.4E-14 1.9E-18 129.1 8.3 81 194-274 20-100 (126)
193 2dgv_A HnRNP M, heterogeneous 99.5 1.2E-13 4.1E-18 119.2 10.0 81 194-276 6-86 (92)
194 2jvr_A Nucleolar protein 3; RN 99.5 5.7E-14 1.9E-18 125.4 8.1 66 373-442 28-94 (111)
195 1oo0_B CG8781-PA, drosophila Y 99.5 6.2E-14 2.1E-18 125.5 8.4 82 194-275 24-105 (110)
196 1wg5_A Heterogeneous nuclear r 99.5 1.3E-13 4.5E-18 122.0 10.4 72 371-444 13-85 (104)
197 3ulh_A THO complex subunit 4; 99.5 6.9E-14 2.3E-18 124.5 8.4 79 194-273 27-105 (107)
198 3pgw_S U1-70K; protein-RNA com 99.5 1.3E-13 4.3E-18 153.3 12.5 142 212-359 8-179 (437)
199 2ad9_A Polypyrimidine tract-bi 99.5 9E-14 3.1E-18 125.1 9.1 66 371-442 29-96 (119)
200 2nlw_A Eukaryotic translation 99.5 7.6E-14 2.6E-18 123.8 8.4 70 372-443 14-89 (105)
201 2dgt_A RNA-binding protein 30; 99.5 2E-13 6.8E-18 117.9 10.8 75 371-457 8-82 (92)
202 2dh8_A DAZ-associated protein 99.5 6.3E-14 2.2E-18 124.3 7.8 82 194-276 14-95 (105)
203 2cpx_A Hypothetical protein FL 99.5 3.5E-14 1.2E-18 128.1 6.2 69 371-443 23-95 (115)
204 1x4g_A Nucleolysin TIAR; struc 99.5 2E-13 6.7E-18 122.0 11.0 76 372-457 24-99 (109)
205 4a8x_A RNA-binding protein wit 99.5 4.6E-14 1.6E-18 120.7 6.6 81 195-275 3-84 (88)
206 2ek1_A RNA-binding protein 12; 99.5 3.6E-14 1.2E-18 123.3 5.9 80 195-274 14-93 (95)
207 2j76_E EIF-4B, EIF4B, eukaryot 99.5 8.1E-14 2.8E-18 122.4 8.1 81 194-276 17-98 (100)
208 1h2v_Z 20 kDa nuclear CAP bind 99.5 9E-14 3.1E-18 132.7 9.0 83 194-276 37-119 (156)
209 2cq3_A RNA-binding protein 9; 99.5 1.7E-13 5.7E-18 121.1 10.0 81 194-276 13-93 (103)
210 2err_A Ataxin-2-binding protei 99.5 8.4E-14 2.9E-18 124.4 8.2 80 371-456 27-106 (109)
211 2kt5_A RNA and export factor-b 99.5 1.3E-13 4.4E-18 126.2 9.6 72 371-443 33-104 (124)
212 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.2E-14 1.1E-18 118.4 5.0 76 197-273 1-76 (77)
213 2cpi_A CCR4-NOT transcription 99.5 9.8E-14 3.3E-18 124.4 8.5 86 195-280 14-105 (111)
214 2ki2_A SS-DNA binding protein 99.5 2.7E-14 9.2E-19 122.8 4.6 73 374-447 2-74 (90)
215 1p1t_A Cleavage stimulation fa 99.5 5.6E-14 1.9E-18 124.3 6.8 81 196-276 8-88 (104)
216 2krb_A Eukaryotic translation 99.5 9.6E-14 3.3E-18 116.9 7.9 73 197-271 2-81 (81)
217 2cqp_A RNA-binding protein 12; 99.5 4.5E-14 1.5E-18 123.5 6.0 81 195-275 14-94 (98)
218 1wf1_A RNA-binding protein RAL 99.5 2.3E-13 7.8E-18 121.8 10.7 92 351-456 7-99 (110)
219 2cpj_A Non-POU domain-containi 99.5 1.6E-13 5.3E-18 120.3 9.4 66 371-442 13-78 (99)
220 1wez_A HnRNP H', FTP-3, hetero 99.5 6.5E-14 2.2E-18 123.4 6.8 78 194-274 13-90 (102)
221 2hvz_A Splicing factor, argini 99.5 1.6E-13 5.5E-18 120.7 9.3 66 374-444 1-66 (101)
222 2kvi_A Nuclear polyadenylated 99.5 1.8E-13 6.1E-18 119.2 9.4 72 371-450 8-80 (96)
223 2cq4_A RNA binding motif prote 99.5 5.3E-14 1.8E-18 126.8 6.2 77 196-273 25-101 (114)
224 1iqt_A AUF1, heterogeneous nuc 99.5 6E-14 2E-18 116.1 5.9 72 375-447 1-72 (75)
225 1x4d_A Matrin 3; structural ge 99.4 8.6E-14 3E-18 122.0 7.2 80 195-280 14-96 (102)
226 2dnn_A RNA-binding protein 12; 99.4 1.1E-13 3.9E-18 123.1 8.0 68 372-442 15-82 (109)
227 2do0_A HnRNP M, heterogeneous 99.4 1.6E-13 5.6E-18 123.5 9.1 80 195-275 14-93 (114)
228 2m2b_A RNA-binding protein 10; 99.4 5.9E-14 2E-18 129.9 6.3 81 195-276 22-108 (131)
229 2dgx_A KIAA0430 protein; RRM d 99.4 1.1E-13 3.8E-18 120.6 7.6 79 195-276 8-90 (96)
230 1wg5_A Heterogeneous nuclear r 99.4 1.6E-13 5.5E-18 121.4 8.8 80 194-275 13-93 (104)
231 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.8E-13 6E-18 120.9 8.8 81 194-276 13-93 (103)
232 2jwn_A Embryonic polyadenylate 99.4 1.1E-13 3.6E-18 126.8 7.5 82 194-276 34-115 (124)
233 1x4a_A Splicing factor, argini 99.4 2.3E-13 8E-18 121.5 9.6 80 194-276 20-99 (109)
234 2rs2_A Musashi-1, RNA-binding 99.4 1.5E-13 5.1E-18 122.8 8.2 83 193-276 22-104 (109)
235 2ki2_A SS-DNA binding protein 99.4 5.4E-14 1.8E-18 120.9 5.1 79 197-276 2-80 (90)
236 1u6f_A Tcubp1, RNA-binding pro 99.4 1.3E-13 4.5E-18 128.9 8.0 83 194-276 40-122 (139)
237 2kt5_A RNA and export factor-b 99.4 2E-13 6.7E-18 125.0 8.9 83 194-277 33-115 (124)
238 1wel_A RNA-binding protein 12; 99.4 6.4E-14 2.2E-18 128.3 5.6 76 371-447 23-98 (124)
239 1fj7_A Nucleolin RBD1, protein 99.4 2.1E-14 7E-19 126.5 2.1 79 372-456 16-94 (101)
240 2cpj_A Non-POU domain-containi 99.4 1.8E-13 6E-18 120.0 8.1 84 194-283 13-96 (99)
241 2ytc_A PRE-mRNA-splicing facto 99.4 3.2E-13 1.1E-17 114.6 9.5 66 371-442 10-76 (85)
242 1x4b_A Heterogeneous nuclear r 99.4 1.5E-13 5.1E-18 124.2 7.8 80 196-276 27-106 (116)
243 2db1_A Heterogeneous nuclear r 99.4 1E-13 3.5E-18 125.7 6.5 69 372-442 16-87 (118)
244 2e5i_A Heterogeneous nuclear r 99.4 5.6E-13 1.9E-17 120.9 11.4 79 371-457 23-102 (124)
245 1fjc_A Nucleolin RBD2, protein 99.4 1.6E-13 5.4E-18 119.5 7.3 78 371-457 14-91 (96)
246 2dis_A Unnamed protein product 99.4 2E-13 6.7E-18 121.9 8.1 83 194-276 6-92 (109)
247 1whx_A Hypothetical protein ri 99.4 3E-13 1E-17 121.2 9.3 71 372-448 9-79 (111)
248 2a3j_A U1 small nuclear ribonu 99.4 3.3E-13 1.1E-17 123.5 9.7 70 372-444 28-101 (127)
249 3zzy_A Polypyrimidine tract-bi 99.4 3.8E-13 1.3E-17 122.6 10.0 80 372-458 27-107 (130)
250 2dgw_A Probable RNA-binding pr 99.4 1.8E-13 6.1E-18 117.9 7.4 80 194-276 8-87 (91)
251 2cpy_A RNA-binding protein 12; 99.4 8.3E-14 2.8E-18 125.5 5.5 78 194-273 13-91 (114)
252 2cq2_A Hypothetical protein LO 99.4 3.1E-13 1.1E-17 120.3 9.1 63 372-440 24-88 (114)
253 2cqg_A TDP-43, TAR DNA-binding 99.4 3E-13 1E-17 119.4 9.0 81 194-276 13-93 (103)
254 2hgl_A HNRPF protein, heteroge 99.4 8.6E-14 2.9E-18 129.0 5.7 70 372-443 43-115 (136)
255 2db1_A Heterogeneous nuclear r 99.4 1E-13 3.4E-18 125.8 5.9 78 194-273 15-95 (118)
256 2cqh_A IGF-II mRNA-binding pro 99.4 2E-13 7E-18 118.1 7.5 75 372-457 7-83 (93)
257 2dnn_A RNA-binding protein 12; 99.4 1.6E-13 5.5E-18 122.1 6.9 75 196-273 16-90 (109)
258 2nlw_A Eukaryotic translation 99.4 1.8E-13 6.1E-18 121.4 7.3 80 195-276 14-100 (105)
259 2la4_A Nuclear and cytoplasmic 99.4 2.3E-13 7.7E-18 119.7 7.9 74 373-456 27-100 (101)
260 2lea_A Serine/arginine-rich sp 99.4 1.2E-13 4E-18 128.4 6.1 82 195-276 46-127 (135)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.4E-13 8.1E-18 127.2 8.1 80 194-273 61-140 (140)
262 2jvo_A Nucleolar protein 3; nu 99.4 4.1E-13 1.4E-17 119.6 9.1 75 371-457 29-103 (108)
263 1iqt_A AUF1, heterogeneous nuc 99.4 8.8E-14 3E-18 115.1 4.4 75 198-273 1-75 (75)
264 1x4c_A Splicing factor, argini 99.4 3.6E-13 1.2E-17 120.0 8.7 76 194-276 13-93 (108)
265 2lmi_A GRSF-1, G-rich sequence 99.4 1.3E-13 4.6E-18 122.6 5.8 71 372-444 10-83 (107)
266 1wel_A RNA-binding protein 12; 99.4 6.2E-14 2.1E-18 128.4 3.7 79 194-273 23-101 (124)
267 2hgl_A HNRPF protein, heteroge 99.4 1.1E-13 3.8E-18 128.2 5.4 78 194-273 42-122 (136)
268 1x4f_A Matrin 3; structural ge 99.4 1.6E-13 5.5E-18 122.1 6.2 68 371-444 23-93 (112)
269 2xnq_A Nuclear polyadenylated 99.4 6.3E-13 2.2E-17 116.0 10.0 73 371-455 20-93 (97)
270 1x5o_A RNA binding motif, sing 99.4 4.8E-13 1.6E-17 120.4 9.5 75 194-269 23-97 (114)
271 2lmi_A GRSF-1, G-rich sequence 99.4 1.4E-13 4.8E-18 122.5 5.8 78 194-273 9-89 (107)
272 3lqv_A PRE-mRNA branch site pr 99.4 5.9E-13 2E-17 120.0 10.0 70 372-444 7-76 (115)
273 1x4f_A Matrin 3; structural ge 99.4 1.9E-13 6.4E-18 121.7 6.5 83 194-282 23-108 (112)
274 2e5j_A Methenyltetrahydrofolat 99.4 3.5E-13 1.2E-17 117.6 8.1 68 372-444 18-85 (97)
275 1nu4_A U1A RNA binding domain; 99.4 2.6E-13 9E-18 118.3 7.2 78 372-456 7-88 (97)
276 2f3j_A RNA and export factor b 99.4 3.9E-13 1.3E-17 130.8 9.2 78 371-449 86-163 (177)
277 2e5g_A U6 snRNA-specific termi 99.4 9E-13 3.1E-17 114.3 10.5 65 372-442 7-71 (94)
278 3r27_A HnRNP L, heterogeneous 99.4 3.9E-13 1.3E-17 116.7 7.8 77 194-276 19-97 (100)
279 1x4g_A Nucleolysin TIAR; struc 99.4 8.1E-13 2.8E-17 117.9 10.1 82 190-277 19-100 (109)
280 1x5p_A Negative elongation fac 99.4 1.9E-12 6.6E-17 112.8 12.3 75 371-457 13-87 (97)
281 2dha_A FLJ20171 protein; RRM d 99.4 1.9E-13 6.4E-18 124.4 5.8 69 373-443 23-95 (123)
282 2dnq_A RNA-binding protein 4B; 99.4 8.8E-13 3E-17 113.3 9.7 75 194-276 6-80 (90)
283 2cq1_A PTB-like protein L; RRM 99.4 6.5E-13 2.2E-17 116.4 9.0 76 195-276 14-91 (101)
284 1wg1_A KIAA1579 protein, homol 99.4 3.1E-13 1.1E-17 115.7 6.6 84 194-284 3-86 (88)
285 2hgn_A Heterogeneous nuclear r 99.4 1.8E-13 6.1E-18 127.2 5.3 79 194-275 44-122 (139)
286 2err_A Ataxin-2-binding protei 99.4 3.5E-13 1.2E-17 120.3 6.9 81 194-276 27-107 (109)
287 2j8a_A Histone-lysine N-methyl 99.4 2.1E-13 7.2E-18 121.7 5.3 69 374-442 3-85 (136)
288 2f3j_A RNA and export factor b 99.4 3.8E-13 1.3E-17 130.9 7.5 82 194-276 86-167 (177)
289 2la4_A Nuclear and cytoplasmic 99.4 8.7E-13 3E-17 116.0 9.1 77 193-275 24-100 (101)
290 2ad9_A Polypyrimidine tract-bi 99.4 5.2E-13 1.8E-17 120.1 7.7 77 194-276 29-107 (119)
291 1sjr_A Polypyrimidine tract-bi 99.4 1.1E-12 3.8E-17 124.0 10.3 80 372-457 45-124 (164)
292 2dha_A FLJ20171 protein; RRM d 99.4 3.4E-13 1.2E-17 122.6 6.3 79 193-273 20-102 (123)
293 2jvr_A Nucleolar protein 3; RN 99.4 3E-13 1E-17 120.7 5.8 80 192-275 24-104 (111)
294 2fc9_A NCL protein; structure 99.4 5.9E-13 2E-17 117.0 7.5 79 194-276 13-91 (101)
295 1whx_A Hypothetical protein ri 99.4 2E-13 7E-18 122.3 4.6 84 194-285 8-91 (111)
296 2xs2_A Deleted in azoospermia- 99.4 5E-13 1.7E-17 117.8 6.8 69 372-443 8-76 (102)
297 1why_A Hypothetical protein ri 99.4 9.7E-13 3.3E-17 114.7 8.5 76 195-276 16-93 (97)
298 2hgm_A HNRPF protein, heteroge 99.4 6.5E-13 2.2E-17 121.1 7.6 70 372-444 41-112 (126)
299 3d2w_A TAR DNA-binding protein 99.4 1E-12 3.5E-17 112.7 8.3 75 371-456 9-83 (89)
300 1wex_A Hypothetical protein (r 99.4 1.1E-12 3.7E-17 115.7 8.7 76 195-276 14-91 (104)
301 2fc8_A NCL protein; structure 99.4 8.9E-13 3E-17 116.1 7.8 80 194-276 13-92 (102)
302 2a3j_A U1 small nuclear ribonu 99.4 9.7E-13 3.3E-17 120.4 8.2 80 195-277 28-111 (127)
303 2hgm_A HNRPF protein, heteroge 99.4 7E-13 2.4E-17 120.8 7.1 77 194-273 40-118 (126)
304 3beg_B Splicing factor, argini 99.4 8E-13 2.7E-17 119.2 7.5 71 194-271 14-84 (115)
305 2ytc_A PRE-mRNA-splicing facto 99.4 1.2E-12 4.2E-17 111.0 8.2 74 194-273 10-84 (85)
306 2lcw_A RNA-binding protein FUS 99.0 6.2E-14 2.1E-18 126.8 0.0 83 194-276 5-95 (116)
307 1fj7_A Nucleolin RBD1, protein 99.4 1.4E-13 4.8E-18 121.1 2.3 80 195-276 16-95 (101)
308 2dnl_A Cytoplasmic polyadenyla 99.4 6E-13 2E-17 119.9 6.3 63 372-435 7-72 (114)
309 1fxl_A Paraneoplastic encephal 99.4 2.1E-12 7.1E-17 124.0 10.4 80 373-456 2-81 (167)
310 1b7f_A Protein (SXL-lethal pro 99.4 1.6E-12 5.3E-17 125.2 9.5 81 372-456 2-82 (168)
311 2e5g_A U6 snRNA-specific termi 99.3 2.7E-12 9.2E-17 111.2 9.7 76 195-276 7-82 (94)
312 2e5j_A Methenyltetrahydrofolat 99.3 1.1E-12 3.7E-17 114.5 7.1 77 195-276 18-94 (97)
313 2cpx_A Hypothetical protein FL 99.3 2.9E-13 1E-17 122.0 3.6 82 195-276 24-105 (115)
314 2jvo_A Nucleolar protein 3; nu 99.3 1.7E-12 6E-17 115.5 8.6 78 191-276 26-103 (108)
315 3egn_A RNA-binding protein 40; 99.3 2.6E-13 8.9E-18 127.5 3.2 81 372-456 44-129 (143)
316 2e44_A Insulin-like growth fac 99.3 1.2E-12 4.2E-17 113.8 7.1 69 372-444 14-83 (96)
317 2pe8_A Splicing factor 45; RRM 99.3 3.4E-12 1.2E-16 112.7 9.9 72 371-442 6-83 (105)
318 2dgt_A RNA-binding protein 30; 99.3 1.7E-12 6E-17 111.9 7.7 75 194-276 8-82 (92)
319 2xnq_A Nuclear polyadenylated 99.3 3E-12 1E-16 111.7 9.1 77 192-276 18-95 (97)
320 2dnp_A RNA-binding protein 14; 99.3 1.8E-12 6.1E-17 111.4 7.5 75 194-276 7-81 (90)
321 2hzc_A Splicing factor U2AF 65 99.3 2.5E-12 8.5E-17 109.6 8.2 66 371-443 4-80 (87)
322 2kvi_A Nuclear polyadenylated 99.3 2.2E-12 7.7E-17 112.2 7.9 74 194-275 8-82 (96)
323 2dgu_A Heterogeneous nuclear r 99.3 1.8E-12 6E-17 114.5 7.2 74 195-276 10-83 (103)
324 1wg1_A KIAA1579 protein, homol 99.3 2.1E-12 7.3E-17 110.4 7.4 64 372-442 4-67 (88)
325 1nu4_A U1A RNA binding domain; 99.3 1.1E-12 3.6E-17 114.4 5.2 81 194-277 6-90 (97)
326 2dnl_A Cytoplasmic polyadenyla 99.3 1.9E-12 6.6E-17 116.5 7.1 77 194-273 6-85 (114)
327 2cpd_A Apobec-1 stimulating pr 99.3 4.1E-12 1.4E-16 111.2 8.9 74 195-276 14-89 (99)
328 2xs2_A Deleted in azoospermia- 99.3 9.8E-13 3.4E-17 115.8 4.9 77 195-274 8-84 (102)
329 2j8a_A Histone-lysine N-methyl 99.3 1.2E-12 4.2E-17 116.8 5.2 80 197-276 3-96 (136)
330 1wf0_A TDP-43, TAR DNA-binding 99.3 1.9E-12 6.5E-17 110.7 5.9 75 372-457 4-78 (88)
331 2diu_A KIAA0430 protein; struc 99.3 4.3E-12 1.5E-16 107.2 7.7 69 374-456 10-83 (96)
332 1fjc_A Nucleolin RBD2, protein 99.3 1.1E-12 3.9E-17 114.0 4.4 77 195-276 15-91 (96)
333 2e44_A Insulin-like growth fac 99.3 2.5E-12 8.5E-17 111.9 6.4 78 195-276 14-92 (96)
334 1wf1_A RNA-binding protein RAL 99.3 3.3E-12 1.1E-16 114.2 7.0 73 195-275 26-99 (110)
335 2diu_A KIAA0430 protein; struc 99.3 8.1E-12 2.8E-16 105.5 8.9 76 197-282 10-90 (96)
336 1l3k_A Heterogeneous nuclear r 99.3 7.9E-12 2.7E-16 123.6 10.2 71 371-442 11-81 (196)
337 2voo_A Lupus LA protein; RNA-b 99.3 1.2E-11 4E-16 122.2 10.7 72 371-444 107-178 (193)
338 2qfj_A FBP-interacting repress 99.3 1.6E-11 5.3E-16 123.4 11.1 84 193-276 122-205 (216)
339 3zzy_A Polypyrimidine tract-bi 99.3 1.2E-11 4.2E-16 112.6 9.1 79 194-277 26-107 (130)
340 2cqh_A IGF-II mRNA-binding pro 99.3 2.8E-12 9.7E-17 110.8 4.5 75 195-276 7-83 (93)
341 2hzc_A Splicing factor U2AF 65 99.3 8.3E-12 2.8E-16 106.3 7.4 71 195-272 5-86 (87)
342 3egn_A RNA-binding protein 40; 99.3 1.2E-12 4.1E-17 123.0 2.2 80 194-276 43-130 (143)
343 1x5p_A Negative elongation fac 99.2 1.6E-11 5.6E-16 106.9 9.3 75 194-276 13-87 (97)
344 1sjr_A Polypyrimidine tract-bi 99.2 1.2E-11 4.2E-16 116.9 8.9 78 195-276 45-124 (164)
345 2e5i_A Heterogeneous nuclear r 99.2 2.2E-11 7.6E-16 110.4 9.9 75 197-277 26-103 (124)
346 2bz2_A Negative elongation fac 99.2 1.1E-11 3.6E-16 112.7 7.3 65 372-444 38-102 (121)
347 2pe8_A Splicing factor 45; RRM 99.2 2.6E-11 9E-16 107.0 9.5 81 194-274 6-92 (105)
348 3d2w_A TAR DNA-binding protein 99.2 1.2E-11 4E-16 106.0 6.0 74 193-275 8-83 (89)
349 2yh0_A Splicing factor U2AF 65 99.2 1.8E-11 6E-16 121.3 8.1 83 194-276 112-194 (198)
350 2cjk_A Nuclear polyadenylated 99.2 8.9E-12 3.1E-16 119.8 5.8 79 196-275 87-165 (167)
351 2cq2_A Hypothetical protein LO 99.2 1.1E-11 3.8E-16 110.3 5.5 73 194-272 23-102 (114)
352 3v4m_A Splicing factor U2AF 65 99.2 2.6E-11 8.8E-16 107.1 7.6 73 372-444 4-88 (105)
353 2voo_A Lupus LA protein; RNA-b 99.2 2.3E-11 7.7E-16 120.1 8.0 80 194-275 107-186 (193)
354 3u1l_A PRE-mRNA-splicing facto 99.2 2.3E-11 7.7E-16 122.9 8.1 64 371-440 132-204 (240)
355 1wf0_A TDP-43, TAR DNA-binding 99.2 1.6E-11 5.4E-16 104.9 4.7 75 195-276 4-78 (88)
356 2bz2_A Negative elongation fac 99.2 4.8E-11 1.6E-15 108.4 7.6 76 193-276 36-111 (121)
357 3pgw_A U1-A; protein-RNA compl 99.1 7E-11 2.4E-15 124.0 9.9 70 371-443 7-80 (282)
358 3ue2_A Poly(U)-binding-splicin 99.1 5.8E-11 2E-15 106.9 7.7 73 372-444 19-100 (118)
359 2dit_A HIV TAT specific factor 99.1 1.3E-10 4.3E-15 104.2 9.9 78 371-456 13-101 (112)
360 3u1l_A PRE-mRNA-splicing facto 99.1 9E-11 3.1E-15 118.5 7.6 78 193-276 131-229 (240)
361 1jmt_A Splicing factor U2AF 35 99.1 4.3E-11 1.5E-15 105.5 4.6 66 378-444 20-97 (104)
362 2dit_A HIV TAT specific factor 99.1 2.1E-10 7.2E-15 102.7 8.9 83 193-279 12-105 (112)
363 1fje_B Nucleolin RBD12, protei 99.1 1.3E-10 4.5E-15 112.6 7.4 76 195-275 98-173 (175)
364 3tht_A Alkylated DNA repair pr 99.1 2.5E-10 8.4E-15 121.6 8.9 78 371-454 16-96 (345)
365 3v4m_A Splicing factor U2AF 65 99.0 3E-10 1E-14 100.3 6.6 79 195-273 4-94 (105)
366 1jmt_A Splicing factor U2AF 35 99.0 1.1E-10 3.8E-15 102.9 3.1 72 201-273 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.0 5E-10 1.7E-14 100.8 6.7 82 192-273 16-106 (118)
368 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.7E-09 5.7E-14 94.2 9.1 50 383-437 27-76 (100)
369 3s6e_A RNA-binding protein 39; 98.9 1.6E-09 5.5E-14 96.8 8.0 70 371-444 5-84 (114)
370 1owx_A Lupus LA protein, SS-B, 98.9 3.7E-09 1.3E-13 94.6 8.8 69 370-444 15-87 (121)
371 2d9o_A DNAJ (HSP40) homolog, s 98.8 1E-08 3.4E-13 89.3 9.3 64 206-276 27-90 (100)
372 3s6e_A RNA-binding protein 39; 98.7 2.2E-08 7.5E-13 89.4 6.4 75 195-273 6-90 (114)
373 3tht_A Alkylated DNA repair pr 98.7 2E-08 6.8E-13 106.9 6.9 64 194-263 16-81 (345)
374 1owx_A Lupus LA protein, SS-B, 98.6 9.2E-08 3.2E-12 85.5 7.0 72 194-271 16-91 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.6 1E-07 3.4E-12 79.8 6.6 69 374-455 8-84 (91)
376 3dxb_A Thioredoxin N-terminall 98.5 1.1E-06 3.6E-11 88.6 14.3 65 384-448 140-208 (222)
377 2dnr_A Synaptojanin-1; RRM dom 98.4 2.1E-07 7.2E-12 77.9 5.7 71 195-274 6-84 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.3 7.2E-07 2.5E-11 75.0 4.8 62 372-442 14-84 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.2 5.4E-07 1.9E-11 75.7 2.3 71 194-273 13-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.1 3.7E-06 1.3E-10 84.5 6.4 66 208-273 141-210 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.0 8.7E-06 3E-10 69.6 6.7 64 374-443 22-90 (117)
382 2dhx_A Poly (ADP-ribose) polym 97.6 0.00038 1.3E-08 59.2 9.7 86 195-289 7-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.5 0.0001 3.6E-09 63.0 5.9 72 194-271 19-95 (117)
384 1uw4_A UPF3X; nonsense mediate 96.6 0.0062 2.1E-07 51.2 7.8 69 197-265 2-72 (91)
385 1uw4_A UPF3X; nonsense mediate 96.6 0.0045 1.5E-07 52.0 6.8 70 374-443 2-73 (91)
386 1whv_A Poly(A)-specific ribonu 96.5 0.0051 1.7E-07 51.6 6.5 54 374-436 17-70 (100)
387 1wwh_A Nucleoporin 35, nucleop 96.5 0.0085 2.9E-07 52.7 8.0 62 373-442 24-85 (119)
388 2dhx_A Poly (ADP-ribose) polym 96.5 0.015 5E-07 49.5 9.2 89 276-386 8-99 (104)
389 1wey_A Calcipressin 1; structu 96.2 0.0038 1.3E-07 53.3 4.5 64 374-443 6-74 (104)
390 1wey_A Calcipressin 1; structu 96.2 0.0061 2.1E-07 52.1 5.4 73 196-274 5-82 (104)
391 3ctr_A Poly(A)-specific ribonu 96.0 0.0059 2E-07 51.4 4.4 54 374-436 7-60 (101)
392 1whv_A Poly(A)-specific ribonu 95.8 0.011 3.6E-07 49.7 5.1 55 196-259 16-70 (100)
393 3ctr_A Poly(A)-specific ribonu 95.8 0.012 4.1E-07 49.5 5.2 53 198-259 8-60 (101)
394 1wwh_A Nucleoporin 35, nucleop 95.7 0.03 1E-06 49.2 7.6 71 195-273 23-94 (119)
395 2l08_A Regulator of nonsense t 95.5 0.019 6.6E-07 48.5 5.5 70 196-265 9-80 (97)
396 2l08_A Regulator of nonsense t 94.9 0.041 1.4E-06 46.5 5.9 71 373-443 9-81 (97)
397 3pq1_A Poly(A) RNA polymerase; 92.5 0.049 1.7E-06 59.8 2.6 69 183-257 40-108 (464)
398 3p3d_A Nucleoporin 53; structu 92.4 0.11 3.7E-06 46.3 4.2 68 374-443 8-89 (132)
399 3p3d_A Nucleoporin 53; structu 91.5 0.1 3.5E-06 46.5 3.0 76 196-273 7-96 (132)
400 3pq1_A Poly(A) RNA polymerase; 91.3 0.075 2.6E-06 58.3 2.4 54 374-433 54-107 (464)
401 3d45_A Poly(A)-specific ribonu 73.1 5.8 0.0002 44.2 7.5 56 373-437 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 59.1 12 0.0004 41.8 6.3 55 197-260 441-495 (507)
403 4eyt_A Telomerase associated p 57.0 38 0.0013 27.4 7.2 56 374-437 13-68 (129)
404 4eyt_A Telomerase associated p 52.9 45 0.0015 27.0 6.9 57 195-259 11-67 (129)
405 3iz6_V 40S ribosomal protein S 28.5 18 0.00061 30.9 1.0 15 1-15 1-15 (108)
406 3lpe_A Putative transcription 27.7 1.6E+02 0.0054 24.1 6.8 52 223-298 40-91 (92)
407 3tj1_A RNA polymerase I-specif 25.3 14 0.00048 42.0 -0.2 8 212-219 385-392 (649)
408 2g0c_A ATP-dependent RNA helic 24.3 1.7E+02 0.0059 22.5 6.3 54 385-447 13-71 (76)
409 3tj1_A RNA polymerase I-specif 23.3 16 0.00054 41.6 -0.3 8 214-221 384-391 (649)
410 3ts2_A Protein LIN-28 homolog 22.4 16 0.00053 33.4 -0.5 28 388-423 2-29 (148)
411 3fry_A Probable copper-exporti 22.0 1.4E+02 0.0049 22.4 5.3 54 374-434 7-60 (73)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.3e-37 Score=329.88 Aligned_cols=247 Identities=21% Similarity=0.341 Sum_probs=220.9
Q ss_pred HhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
......++|||+|||..+|+++|+++|.+|| |..|.+ +.++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 89 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV 89 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEE
Confidence 3445678999999999999999999999999 998888 456899999999999999999999999999999999
Q ss_pred cCCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccC
Q 004069 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350 (775)
Q Consensus 271 ~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~ 350 (775)
.++...++|||+|||..+++++|+++|..+| .|..+.++.+ ..++.++|||||+|.+.++|.+|+..|++..+ .
T Consensus 90 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~---~ 163 (284)
T 3smz_A 90 QLQPTDALLCVANLPPSLTQQQFEELVRPFG--SLERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL---G 163 (284)
T ss_dssp EECCCSCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred EecCCCCEEEEcCCCCcCCHHHHHHHHHhcC--CeeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCCEe---C
Confidence 9999999999999999999999999999999 7999998877 46789999999999999999999999999877 4
Q ss_pred CCCceecccCCCCCCCccccccccceecCCCCCCC-CHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHH
Q 004069 351 DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASW-DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (775)
Q Consensus 351 ~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (775)
++.+.|.++....... .....++|||+|||..+ |+++|+++|++||.|..|.|+.+. +|+++|||||+|.+.++|.
T Consensus 164 g~~i~v~~a~~~~~~~--~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 164 PRTLYVHWTDAGQLTP--ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp TEECEEEECCGGGCCT--TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHH
T ss_pred CcEEEEEECCCCCCCc--ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHH
Confidence 8999999987654322 22456899999999995 999999999999999999999986 7899999999999999999
Q ss_pred HHHHHhCCCccCCCcceEEEEeeccCCC
Q 004069 430 TCAKSINNAELGEGDNKAKVRARLSRPL 457 (775)
Q Consensus 430 ~A~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (775)
+|+..|||..|.| ..+.+.++.+.
T Consensus 241 ~A~~~l~g~~~~g----~~l~v~~a~~~ 264 (284)
T 3smz_A 241 EAQQQADGLSLGG----SHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHTTCEETT----EECEEEECCSS
T ss_pred HHHHHhCCCccCC----eEEEEEEecCC
Confidence 9999999999987 44555555543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.4e-37 Score=331.01 Aligned_cols=252 Identities=20% Similarity=0.312 Sum_probs=208.8
Q ss_pred HHhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 190 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
.+.....++|||+|||+.+|+++|+++|.+||.|..|.|+.+... ++|||||+|.+.++|.+||. |++..|.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 344567889999999999999999999999999999999987643 58999999999999999995 999999999999
Q ss_pred ccCCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceecc
Q 004069 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (775)
Q Consensus 270 V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~ 349 (775)
|.++ ..++|||+|||..+++++|.++|..+|. .|..|.++.+. .+.++|||||+|.+.++|.+|+..|++..+
T Consensus 112 v~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~-~i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--- 184 (292)
T 2ghp_A 112 VSHL-TECTLWMTNFPPSYTQRNIRDLLQDINV-VALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGLKI--- 184 (292)
T ss_dssp EEEC-CSCEEEEECCCTTCCHHHHHHHHHHTTC-CCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE---
T ss_pred EEEC-CCCEEEEECCCCCCCHHHHHHHHHHhCC-CeEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe---
Confidence 9987 4679999999999999999999999982 57788887664 377899999999999999999999999877
Q ss_pred CCCCceecccCCCCCCCc--cccccccceecCCCCCC-CCHHHHHHHHhccCCEEEEEEecCCC-CCCcccEEEEEeCCH
Q 004069 350 VDRPAKVSFADSFIDPGD--EIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMP-SAKRKDFGFVTFDTH 425 (775)
Q Consensus 350 ~~~~l~v~~a~~~~~~~~--~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~-~g~~~g~afV~F~~~ 425 (775)
.++.|.|.++.+...... ......++|||+|||.. +|+++|+++|++||.|..|.|+.+.. |+.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 489999999876544332 24456689999999999 99999999999999999999999876 699999999999999
Q ss_pred HHHHHHHHHhCCCccCCCcceEEEEeeccCC
Q 004069 426 DAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 426 ~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
++|.+|| .|||..|.| ..|.+.++.+
T Consensus 265 ~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp HHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred HHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 9999999 999999986 4455555544
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=4.7e-27 Score=227.96 Aligned_cols=166 Identities=20% Similarity=0.403 Sum_probs=148.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999998877653
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
....
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 2110
Q ss_pred eecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 004069 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (775)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (775)
....++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+|+..
T Consensus 86 ---------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 86 ---------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp ---------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred ---------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 01227899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCccCCCcceEEEEe
Q 004069 435 INNAELGEGDNKAKVRA 451 (775)
Q Consensus 435 l~g~~~~g~~~~~~v~~ 451 (775)
|||..|.|+...+.|..
T Consensus 151 l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp HTTCCCTTCSSCCEEEE
T ss_pred hcCCEecCCCeEEEEEe
Confidence 99999988666666654
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.4e-26 Score=224.10 Aligned_cols=164 Identities=20% Similarity=0.411 Sum_probs=146.7
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
.++|||+|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999888765432
Q ss_pred CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCce
Q 004069 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (775)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~ 355 (775)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred ecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 004069 356 VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (775)
Q Consensus 356 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 435 (775)
....++|||+|||..+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|
T Consensus 85 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 85 --------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp --------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 011267999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCccCCCcceEEEE
Q 004069 436 NNAELGEGDNKAKVR 450 (775)
Q Consensus 436 ~g~~~~g~~~~~~v~ 450 (775)
||..|.|+.+.+.|.
T Consensus 151 ~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 151 NGQKPSGATEPITVK 165 (167)
T ss_dssp TTCCCTTCSSCCEEE
T ss_pred cCCccCCCccceEEE
Confidence 999999866555554
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=1.4e-26 Score=230.73 Aligned_cols=173 Identities=27% Similarity=0.502 Sum_probs=143.7
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4567899999999999999999999999999999999999999999999999999999999985 888899998887765
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
...... . . .
T Consensus 90 ~~~~~~---------------------------------~-------~---------------------~---------- 98 (196)
T 1l3k_A 90 VSREDS---------------------------------Q-------R---------------------P---------- 98 (196)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cCcccc---------------------------------c-------c---------------------c----------
Confidence 321000 0 0 0
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.
T Consensus 99 --------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 99 --------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp ------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred --------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 000123789999999999999999999999999999999999999999999999999999999998
Q ss_pred HhCCCccCCCcceEEEEeeccCCC
Q 004069 434 SINNAELGEGDNKAKVRARLSRPL 457 (775)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~~~ 457 (775)
. ++..|.| ..|.+.++.++
T Consensus 165 ~-~~~~~~G----~~i~v~~a~~k 183 (196)
T 1l3k_A 165 Q-KYHTVNG----HNCEVRKALSK 183 (196)
T ss_dssp C-SCCEETT----EECEEEECC--
T ss_pred h-CCcEECC----EEEEEEecCCh
Confidence 6 7999987 33444444443
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=1.4e-26 Score=234.30 Aligned_cols=180 Identities=20% Similarity=0.433 Sum_probs=147.0
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 44678999999999999999999999999999999999888999999999999999999999999999999999988654
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
..... ... ....+..
T Consensus 106 ~~~~~----------~~~------------------------------------------~~~~~~~------------- 120 (216)
T 2qfj_A 106 SNIGQ----------AQP------------------------------------------IIDQLAE------------- 120 (216)
T ss_dssp SCCGG----------GHH------------------------------------------HHHHHHH-------------
T ss_pred CCccc----------cch------------------------------------------hhhhhhc-------------
Confidence 32210 000 0000000
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
.....++|||+|||..+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+|+.
T Consensus 121 ---------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 121 ---------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp ---------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ---------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 01123799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEeeccC
Q 004069 434 SINNAELGEGDNKAKVRARLSR 455 (775)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~ 455 (775)
.|||..|.|.. +.|..+...
T Consensus 186 ~l~g~~~~g~~--i~V~~a~~~ 205 (216)
T 2qfj_A 186 SMNLFDLGGQY--LRVGKAVTP 205 (216)
T ss_dssp HHTTCBCSSSB--CEEEECSSC
T ss_pred HccCCEeCCcE--EEEEEecCC
Confidence 99999998733 444444433
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=6.6e-27 Score=236.64 Aligned_cols=180 Identities=24% Similarity=0.395 Sum_probs=150.1
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+++|+++|+++|++||.|+.|+|+++..+++++|||||+|.+.++|.+||..|++..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred --------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCce
Q 004069 275 --------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346 (775)
Q Consensus 275 --------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i 346 (775)
...+|||+|||+.+++++|+++|.+|| .|..|.|+.+. +.++|||||+|.+.++|.+|++.||+..+
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~d~---~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEET---TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcC--CeEEEEeeccC---CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999999 89999998773 45799999999999999999999999877
Q ss_pred eccCCCCceecccCCCCCCCccccccccceecCCCC
Q 004069 347 LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLP 382 (775)
Q Consensus 347 ~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp 382 (775)
.++.|.|.++................++..++|
T Consensus 169 ---~g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P 201 (213)
T 4f02_A 169 ---NDRKVFVGRFKSRKEREAELGARAKEFYPYDVP 201 (213)
T ss_dssp ---TTEECEEEECCCHHHHHHHHC------------
T ss_pred ---CCEEEEEEEcCCCcccchhhhcccCCCCCCCCC
Confidence 489999999876433222222233444444444
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=3.6e-26 Score=231.26 Aligned_cols=168 Identities=20% Similarity=0.349 Sum_probs=143.8
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
.+.++|||+|||+++|+++|+++|.+|| .|..|.|+.+ ..+++++|||||+|.+.++|.+|+..+++..+ .++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAG--PILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCcc
Confidence 4567999999999999999999999999 8999999987 46789999999999999999999999998876 4888
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
+.+.++..... .......+|||+|||..+|+++|+++|.+||.|..|.|+++. +.++|||||+|.+.++|++||.
T Consensus 87 i~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 87 VRIMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp CEEEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHH
T ss_pred ccccccccccc---ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHH
Confidence 88887754322 122345789999999999999999999999999999999884 4579999999999999999999
Q ss_pred HhCCCccCCCcceEEEEeeccCC
Q 004069 434 SINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
.|||..|.| ..|.+.++++
T Consensus 162 ~lng~~~~g----~~i~V~~a~~ 180 (213)
T 4f02_A 162 KMNGMLLND----RKVFVGRFKS 180 (213)
T ss_dssp HHTTCEETT----EECEEEECCC
T ss_pred HhCCCEECC----EEEEEEEcCC
Confidence 999999987 3344445444
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-25 Score=216.95 Aligned_cols=164 Identities=21% Similarity=0.402 Sum_probs=145.4
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCcee
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v 356 (775)
++|||+|||.++|+++|+++|..+| .|..|.++.+. .++++|||||+|.+.++|.+|+..|++..+ .++.+.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGG--PIANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGS--CEEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcC--CeEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEE
Confidence 4799999999999999999999999 89999998774 477899999999999999999999999887 4899999
Q ss_pred cccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 004069 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (775)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (775)
.++...... .....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||
T Consensus 74 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 74 NWAFQSQQS---SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp EECCCCCCC---CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EEcCCCCCC---CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 988665432 22456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCcceEEEEeecc
Q 004069 437 NAELGEGDNKAKVRARLS 454 (775)
Q Consensus 437 g~~~~g~~~~~~v~~~~~ 454 (775)
|..|.| ..+.+.++
T Consensus 151 g~~~~g----~~i~v~~a 164 (166)
T 3md3_A 151 GQDLNG----RPLRINWA 164 (166)
T ss_dssp TCEETT----EECEEEES
T ss_pred CCccCC----cEEEEEec
Confidence 999987 44444444
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=5.4e-26 Score=220.30 Aligned_cols=155 Identities=25% Similarity=0.514 Sum_probs=136.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
+.++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ...+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457899999999999999999999999999999999988999999999999999999999994 467788877665431
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
.. .
T Consensus 80 ~~--------------~--------------------------------------------------------------- 82 (167)
T 2cjk_A 80 PR--------------D--------------------------------------------------------------- 82 (167)
T ss_dssp CH--------------H---------------------------------------------------------------
T ss_pred ch--------------h---------------------------------------------------------------
Confidence 10 0
Q ss_pred eecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 004069 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (775)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (775)
.....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+.
T Consensus 83 --------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~- 147 (167)
T 2cjk_A 83 --------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ- 147 (167)
T ss_dssp --------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-
T ss_pred --------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-
Confidence 00112689999999999999999999999999999999999899999999999999999999998
Q ss_pred hCCCccCCC
Q 004069 435 INNAELGEG 443 (775)
Q Consensus 435 l~g~~~~g~ 443 (775)
||+..|.|.
T Consensus 148 ~~~~~~~g~ 156 (167)
T 2cjk_A 148 NKFIDFKDR 156 (167)
T ss_dssp CSEECSSSS
T ss_pred CCCEEeCCe
Confidence 899999873
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=3.2e-25 Score=216.42 Aligned_cols=169 Identities=25% Similarity=0.496 Sum_probs=146.1
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCC--CccceEEeecCCHHHHHHHHHHHcCCceeccCCC
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG--MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g--~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~ 352 (775)
+.++|||+|||+.+|+++|+++|.++| .|..|.++.+. .++ +++|||||+|.+.++|.+|++.|++..+..+..+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG--AVYEINVLRDR-SQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEEEC-SSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEecC-CCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 456899999999999999999999999 89999998874 344 7899999999999999999999999888766678
Q ss_pred CceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 353 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
.+.+.++...... ....++|||+|||..+|+++|+++|++||.|..|.|+++. +|+++|||||+|.+.++|.+|+
T Consensus 79 ~~~~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 79 PIQMKPADSEKNN----AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp CCEEEECGGGCCS----CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred ceEEccccccccc----cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHH
Confidence 8888877654332 2355899999999999999999999999999999999985 5899999999999999999999
Q ss_pred HHhCCCccCCC-cceEEEEe
Q 004069 433 KSINNAELGEG-DNKAKVRA 451 (775)
Q Consensus 433 ~~l~g~~~~g~-~~~~~v~~ 451 (775)
..|||..+.++ ...+.|..
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEE
T ss_pred HHhcCCcccCCCCCCeEEEe
Confidence 99999888753 34455443
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=2.5e-25 Score=217.13 Aligned_cols=162 Identities=28% Similarity=0.534 Sum_probs=145.5
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCC--CCcceEEEEEccHHHHHHHHHhhcCCccc---Ccccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKNPVIN---GKQCG 269 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g--~~~g~afV~F~s~e~A~~Al~~l~~~~~~---gr~i~ 269 (775)
+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++ .++|||||+|.+.++|.+|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998876 89999999999999999999999998765 55666
Q ss_pred ccCCC-------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHc
Q 004069 270 VTPSQ-------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (775)
Q Consensus 270 V~~a~-------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~ 342 (775)
+.++. ..++|||+|||..+|+++|+++|.+|| .|..+.++.+. ++.++|||||+|.+.++|.+|++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 65542 457899999999999999999999999 79999998873 58899999999999999999999999
Q ss_pred CCceeccCCCCceecccC
Q 004069 343 KRDVLFGVDRPAKVSFAD 360 (775)
Q Consensus 343 ~~~i~~~~~~~l~v~~a~ 360 (775)
+..+..+.+++|.|.|++
T Consensus 158 g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTTCSSCCEEEECC
T ss_pred CCcccCCCCCCeEEEecC
Confidence 988876667999999874
No 13
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.9e-25 Score=210.82 Aligned_cols=157 Identities=25% Similarity=0.487 Sum_probs=144.1
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC--
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-- 274 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~-- 274 (775)
++|||+|||..+|+++|+++|++||.|..|.|+.++. +.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4799999999999999999999999999999998864 7789999999999999999999999999999999998763
Q ss_pred ------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceec
Q 004069 275 ------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348 (775)
Q Consensus 275 ------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~ 348 (775)
...+|||+|||..+++++|+++|..+| .|..+.++.+ ..++.++|||||+|.+.++|.+|+..|++..+
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 346899999999999999999999999 8999999877 36788999999999999999999999999887
Q ss_pred cCCCCceecccC
Q 004069 349 GVDRPAKVSFAD 360 (775)
Q Consensus 349 ~~~~~l~v~~a~ 360 (775)
.++.|.|.|+.
T Consensus 155 -~g~~i~v~~a~ 165 (166)
T 3md3_A 155 -NGRPLRINWAA 165 (166)
T ss_dssp -TTEECEEEESC
T ss_pred -CCcEEEEEecC
Confidence 48999999875
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=2.6e-24 Score=214.57 Aligned_cols=181 Identities=20% Similarity=0.397 Sum_probs=141.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhcccc----C-------ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQV----G-------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (775)
..++|||+|||+.+|+++|+++|.+| | .|..+.+ +.++|||||+|.+.++|.+|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45789999999999999999999999 5 5666655 356899999999999999999 7999999
Q ss_pred cCccccccCCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcC
Q 004069 264 NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (775)
Q Consensus 264 ~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~ 343 (775)
.|+.|.|.++.......-. . . . . .
T Consensus 76 ~g~~i~v~~~~~~~~~~~~------------------~-----------~-~-~-------------------------~ 99 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM------------------S-----------E-N-P-------------------------S 99 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS------------------S-----------S-C-S-------------------------S
T ss_pred cCceEEEeCCCCCCCCCCC------------------c-----------C-C-C-------------------------c
Confidence 9999999876443210000 0 0 0 0 0
Q ss_pred CceeccCCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeC
Q 004069 344 RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423 (775)
Q Consensus 344 ~~i~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 423 (775)
... .+ ..........++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.
T Consensus 100 ~~~---~~------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~ 164 (198)
T 2yh0_A 100 VYV---PG------------VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 164 (198)
T ss_dssp CCC---TT------------SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred CCC---CC------------CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEEC
Confidence 000 00 000011134589999999999999999999999999999999999989999999999999
Q ss_pred CHHHHHHHHHHhCCCccCCCcceEEEEeeccCCC
Q 004069 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457 (775)
Q Consensus 424 ~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (775)
+.++|.+|+..|||..|.| ..+.+.++++.
T Consensus 165 ~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 165 DINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp SSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred CHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 9999999999999999986 45555565553
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=1.2e-24 Score=218.17 Aligned_cols=164 Identities=15% Similarity=0.203 Sum_probs=137.8
Q ss_pred CCCcccccCcc-ccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 275 DSDTLFLGNIC-KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 275 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
++++|||+||+ ..+++++|+++|.+|| .|..|.++.+. +|||||+|.+.++|.+|++.|++..+ .+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G--~v~~v~i~~~~------~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~ 71 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG--NVEKVKFMKSK------PGAAMVEMADGYAVDRAITHLNNNFM---FGQK 71 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTS--CEEEEEECTTS------TTCEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC--CeEEEEEecCC------CCEEEEEECCHHHHHHHHHHhCCCEE---CCce
Confidence 45789999999 8999999999999999 89999998652 79999999999999999999999887 4889
Q ss_pred ceecccCCCCCCC--------------------------------ccccccccceecCCCCCCCCHHHHHHHHhccCCE-
Q 004069 354 AKVSFADSFIDPG--------------------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEI- 400 (775)
Q Consensus 354 l~v~~a~~~~~~~--------------------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v- 400 (775)
|.|.++....... .....+.++|||+|||+.+|+++|+++|++||.|
T Consensus 72 l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 72 MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 9999875322100 0011235689999999999999999999999999
Q ss_pred -EEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 401 -TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 401 -~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.+...+..+.+
T Consensus 152 ~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 152 PTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred eEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 899998774 5567999999999999999999999999998755444433
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.91 E-value=7.1e-25 Score=214.30 Aligned_cols=164 Identities=18% Similarity=0.332 Sum_probs=136.4
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
....++|||+|||..+|+++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 345778999999999999999999999998766 334444568899999999999999999995 999999999998877
Q ss_pred CCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCC
Q 004069 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (775)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~ 352 (775)
+.....
T Consensus 88 ~~~~~~-------------------------------------------------------------------------- 93 (175)
T 1fje_B 88 PKGRDS-------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCSSC--------------------------------------------------------------------------
T ss_pred CCCccc--------------------------------------------------------------------------
Confidence 643210
Q ss_pred CceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 353 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
......++|||+|||..+|+++|+++|++||.|..| ..++.++|||||+|.+.++|.+|+
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHH
Confidence 000133899999999999999999999999988766 457889999999999999999999
Q ss_pred HHhCCCccCCCcceEEEEeeccCC
Q 004069 433 KSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 433 ~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
..|||..|.| ..|.+.++.+
T Consensus 154 ~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 154 EEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHTEEEETT----EEEEEEECSS
T ss_pred HHhCCCEECC----eEEEEEecCC
Confidence 9999999987 4455666554
No 17
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.91 E-value=5.4e-24 Score=207.25 Aligned_cols=152 Identities=22% Similarity=0.440 Sum_probs=134.1
Q ss_pred CCCcccccCccccccHHHHHHHHhhc----CCC-----ceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHY----GVD-----NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~~-----~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~ 345 (775)
+.++|||+|||..+|+++|+++|.++ |.. .|..+.+.. ++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 45689999999999999999999999 522 455555543 3899999999999999999 788877
Q ss_pred eeccCCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCH
Q 004069 346 VLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425 (775)
Q Consensus 346 i~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 425 (775)
+ .++.+.|.++...... ...++|||+|||..+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.
T Consensus 75 ~---~g~~i~v~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 F---QGQSLKIRRPHDYQPL-----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp E---TTEECEEECCSSCCCC-----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred e---cCceeeecCCcccCCC-----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 6 4899999987654332 2358999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHhCCCccCC
Q 004069 426 DAAVTCAKSINNAELGE 442 (775)
Q Consensus 426 ~~A~~A~~~l~g~~~~g 442 (775)
++|.+|+..|||..|.|
T Consensus 147 ~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp THHHHHHHHHTTCEETT
T ss_pred HHHHHHHHHcCCCEECC
Confidence 99999999999999987
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=1.3e-23 Score=221.87 Aligned_cols=238 Identities=14% Similarity=0.211 Sum_probs=141.2
Q ss_pred cCccEEEEcCCCCCCcHHHHH----hhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
...++|||+|||+.+|+++|+ ++|.+||.|..|+|++ +++++|||||+|.+.++|.+||..||+..|.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 456789999999999999976 8999999999999875 578999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecC----CH-HHHHHHHHHHcCC
Q 004069 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS----SR-SDAMDAFKRLQKR 344 (775)
Q Consensus 270 V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~----s~-e~A~~Al~~l~~~ 344 (775)
|.++.....+....... ..+......-.... ....................+.+.-. .. ..+...+..+.+.
T Consensus 84 v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGT-FVERDRKREKRKPK--SQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEeccCcchhhhhcCC-cccchhhhhhhhcc--ccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99885544322211111 10000000000000 00000000000000000000000000 00 0000000000000
Q ss_pred ceecc-CCC-----CceecccCC------------CCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEe
Q 004069 345 DVLFG-VDR-----PAKVSFADS------------FIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELA 406 (775)
Q Consensus 345 ~i~~~-~~~-----~l~v~~a~~------------~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~ 406 (775)
.-... .+. .....+... ............++|||+|||..+|+++|+++|++||.|..|.|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00000 000 000000000 000001122345889999999999999999999999999999999
Q ss_pred cCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-C
Q 004069 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-E 442 (775)
Q Consensus 407 ~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g 442 (775)
.+. +|||||+|.+.++|.+||..|||..|. |
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 663 589999999999999999999999998 5
No 19
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.90 E-value=3.1e-23 Score=207.84 Aligned_cols=156 Identities=24% Similarity=0.296 Sum_probs=132.3
Q ss_pred CccEEEEcCCC-CCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLD-KDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp-~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..++|||+||| +.+|+++|+++|.+||.|..|+|+.+ .+|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 89999999999999999999999864 3799999999999999999999999999999999765
Q ss_pred C-------------------------------------------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEE
Q 004069 274 Q-------------------------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310 (775)
Q Consensus 274 ~-------------------------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l 310 (775)
. +.++|||+|||+.+++++|+++|.+||.+.+..+.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 2 123599999999999999999999999433388888
Q ss_pred eecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccC-CCCceecc
Q 004069 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV-DRPAKVSF 358 (775)
Q Consensus 311 ~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~-~~~l~v~~ 358 (775)
+.+. +..+|||||+|.+.++|.+|+..||+..+.... ..++.|.|
T Consensus 158 ~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 158 FSGK---SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 7663 455799999999999999999999998874222 23444444
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.89 E-value=4.4e-23 Score=200.75 Aligned_cols=152 Identities=25% Similarity=0.482 Sum_probs=137.8
Q ss_pred CccEEEEcCCCCCCcHHHHHhhcccc----C-------ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQV----G-------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (775)
..++|||+|||..+|+++|+++|++| | .|..+.+. .++|||||+|.+.++|.+|| .|++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 67777764 34899999999999999999 7999999
Q ss_pred cCccccccCCCC------CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHH
Q 004069 264 NGKQCGVTPSQD------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (775)
Q Consensus 264 ~gr~i~V~~a~~------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~A 337 (775)
.|+.|.|.++.. .++|||+|||..+++++|+++|.++| .|..+.++.+. .++.++|||||+|.+.++|.+|
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFG--PLKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTS--CEEEEEEEECT-TTCSEEEEEEEEESSTTHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcC--CceEEEEEecC-CCCCcceEEEEEeCCHHHHHHH
Confidence 999999988754 38999999999999999999999999 89999998873 5788999999999999999999
Q ss_pred HHHHcCCceeccCCCCceeccc
Q 004069 338 FKRLQKRDVLFGVDRPAKVSFA 359 (775)
Q Consensus 338 l~~l~~~~i~~~~~~~l~v~~a 359 (775)
+..|++..+ .++.|.|.|+
T Consensus 153 ~~~l~g~~~---~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQL---GDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEE---TTEECEEEEC
T ss_pred HHHcCCCEE---CCeEEEEEeC
Confidence 999999877 4899999886
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=4.2e-23 Score=215.44 Aligned_cols=160 Identities=26% Similarity=0.472 Sum_probs=146.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+++|+++|+++|.+||.|..|.|.+ ++|||||+|.+.++|.+||..|++..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4456899999999999999999999999999999964 4799999999999999999999999999999999999
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCc-eeccCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD-VLFGVDR 352 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~-i~~~~~~ 352 (775)
....+|||+|||..+|+++|+++|..|| .|..|.|+.+ .+++++|||||+|.+.++|.+|+..|++.. +....++
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r 169 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFG--PVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR 169 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcC--CeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc
Confidence 9999999999999999999999999999 8999999988 478999999999999999999999995544 4455688
Q ss_pred CceecccCCCC
Q 004069 353 PAKVSFADSFI 363 (775)
Q Consensus 353 ~l~v~~a~~~~ 363 (775)
++.|.++....
T Consensus 170 ~i~v~~~~~~~ 180 (261)
T 3sde_A 170 PVIVEPMEQFD 180 (261)
T ss_dssp BCEEEECCCEE
T ss_pred eEEEeeccccC
Confidence 99999887643
No 22
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.89 E-value=1.5e-22 Score=207.06 Aligned_cols=166 Identities=16% Similarity=0.326 Sum_probs=138.7
Q ss_pred cCCCCCCcccccCccc-cccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceecc
Q 004069 271 TPSQDSDTLFLGNICK-TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (775)
Q Consensus 271 ~~a~~~~~l~V~nLp~-~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~ 349 (775)
.....+++|||+|||. .+++++|+++|..|| .|..|.++.+. +|||||+|.+.++|.+|++.|++..+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G--~i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~--- 97 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYG--DVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL--- 97 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHT--CEEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC---
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE---
Confidence 3346678999999999 999999999999999 89999998763 78999999999999999999999877
Q ss_pred CCCCceecccCCCCCCC------------------------------ccccccccceecCCCCCCCCHHHHHHHHhccC-
Q 004069 350 VDRPAKVSFADSFIDPG------------------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYG- 398 (775)
Q Consensus 350 ~~~~l~v~~a~~~~~~~------------------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G- 398 (775)
.++.|.|.++....... .....+.++|||+|||..+++++|+++|.+||
T Consensus 98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 98 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 48999999886431100 01123468899999999999999999999999
Q ss_pred CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CCcceEEEEeeccCC
Q 004069 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-EGDNKAKVRARLSRP 456 (775)
Q Consensus 399 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~~~~~v~~~~~~~ 456 (775)
.|..|.|+.. .+|||||+|.+.++|.+|+..|||..|. |. .+.+.++++
T Consensus 178 ~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~----~l~v~~a~~ 227 (229)
T 2adc_A 178 VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENH----HLRVSFSKS 227 (229)
T ss_dssp CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSC----BCEEEECSS
T ss_pred CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCC----eEEEEEecC
Confidence 9999999653 3789999999999999999999999997 53 344455443
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=3.9e-23 Score=215.66 Aligned_cols=158 Identities=21% Similarity=0.327 Sum_probs=136.3
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
..++|||+|||..+|+++|+++|..|| .|..|.+.++ +|||||+|.+.++|.+|+..|++..+ .++.|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~l 88 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYG--EPSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTIL---KSRPL 88 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGC--CCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEE---CCcee
Confidence 446899999999999999999999999 7888888654 89999999999999999999999877 48999
Q ss_pred eecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 004069 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (775)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (775)
.|.++.. .++|||+|||..+|+++|+++|.+||.|..|.|+.+ .+|+++|||||+|.+.++|.+||..
T Consensus 89 ~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 89 RIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Eeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 9998854 478999999999999999999999999999999999 5899999999999999999999999
Q ss_pred hCCCccCCCcceEEEEeeccCC
Q 004069 435 INNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 435 l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
||+..+........|.+.++.+
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCC
T ss_pred hcCCeEEecCCCceEEEeeccc
Confidence 9654443222224444455443
No 24
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.88 E-value=2.9e-22 Score=211.82 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=150.4
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...+|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999998773
Q ss_pred ---------CCCcccccCccccc-cHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCC
Q 004069 275 ---------DSDTLFLGNICKTW-TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (775)
Q Consensus 275 ---------~~~~l~V~nLp~~~-te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~ 344 (775)
..++|||+|||..+ ++++|+++|..|| .|..+.|+.+. ++.++|+|||+|.+.++|.+|+..|++.
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVH--SPTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--CCSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCC--CeEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 34689999999995 9999999999999 89999988874 6889999999999999999999999998
Q ss_pred ceeccCCCCceecccCCCCC
Q 004069 345 DVLFGVDRPAKVSFADSFID 364 (775)
Q Consensus 345 ~i~~~~~~~l~v~~a~~~~~ 364 (775)
.+ .++.|.|.|+.+...
T Consensus 250 ~~---~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 250 SL---GGSHLRVSFCAPGPP 266 (284)
T ss_dssp EE---TTEECEEEECCSSSC
T ss_pred cc---CCeEEEEEEecCCCc
Confidence 88 589999999976543
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.88 E-value=4.9e-22 Score=198.30 Aligned_cols=153 Identities=16% Similarity=0.324 Sum_probs=132.0
Q ss_pred CCcccccCccc-cccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 276 SDTLFLGNICK-TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 276 ~~~l~V~nLp~-~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
+++|||+|||. .+++++|+++|..+| .|..|.++.+. +|||||+|.+.++|.+|+..|++..+ .++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G--~i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l 71 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYG--DVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---HGKPI 71 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTC--CCSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC---SSCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee---cCeEE
Confidence 56899999999 999999999999999 79999988763 78999999999999999999999877 48999
Q ss_pred eecccCCCCCCC------------------------------ccccccccceecCCCCCCCCHHHHHHHHhccC-CEEEE
Q 004069 355 KVSFADSFIDPG------------------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYG-EITKI 403 (775)
Q Consensus 355 ~v~~a~~~~~~~------------------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v 403 (775)
.|.++....... .....+.++|||+|||..+|+++|+++|.+|| .|..|
T Consensus 72 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v 151 (198)
T 1qm9_A 72 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 151 (198)
T ss_dssp EEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEE
T ss_pred EEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEE
Confidence 998876432110 01123468899999999999999999999999 99999
Q ss_pred EEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CCc
Q 004069 404 ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-EGD 444 (775)
Q Consensus 404 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~ 444 (775)
.|+.+ .+|||||+|.+.++|.+|+..|||..|. |..
T Consensus 152 ~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 152 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp EESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred EEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 99764 2799999999999999999999999998 543
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.87 E-value=6.4e-22 Score=202.27 Aligned_cols=155 Identities=27% Similarity=0.381 Sum_probs=137.9
Q ss_pred cCccEEEEcCCCC-CCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 194 RKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
...++|||+|||. .+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|.+||..|++..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4578899999999 99999999999999999999998764 78999999999999999999999999999999976
Q ss_pred CCC-----------------------------------------CCcccccCccccccHHHHHHHHhhcCCCceeeeEEe
Q 004069 273 SQD-----------------------------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLV 311 (775)
Q Consensus 273 a~~-----------------------------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~ 311 (775)
+.. .++|||+|||..+++++|+++|..+|. .|..|.++
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-~i~~v~i~ 185 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG-VVKGFKFF 185 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC-CEEEEEEC
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC-CeeEEEEE
Confidence 632 367999999999999999999999982 57888886
Q ss_pred ecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCC
Q 004069 312 EDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF 362 (775)
Q Consensus 312 ~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~ 362 (775)
.. .++||||+|.+.++|.+|+..|++..+. .++.|.|.|+.+.
T Consensus 186 ~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~--~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QK------DRKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLRVSFSKST 228 (229)
T ss_dssp SS------STTCEEEEESSHHHHHHHHHHHTTCBSS--SSCBCEEEECSSC
T ss_pred EC------CCcEEEEEECCHHHHHHHHHHHCCCccC--CCCeEEEEEecCC
Confidence 53 2789999999999999999999998772 3899999998753
No 27
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.86 E-value=7.1e-22 Score=197.12 Aligned_cols=153 Identities=27% Similarity=0.391 Sum_probs=135.9
Q ss_pred ccEEEEcCCCC-CCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 196 EFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 196 ~~~l~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
.++|||+|||. .+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999998763 7899999999999999999999999999999997652
Q ss_pred -----------------------------------------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeec
Q 004069 275 -----------------------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313 (775)
Q Consensus 275 -----------------------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d 313 (775)
+.++|||+|||..+++++|+++|..+| ..|..|.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT-SCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC-CCceEEEEEeC
Confidence 156799999999999999999999998 25778888654
Q ss_pred CCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCC
Q 004069 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF 362 (775)
Q Consensus 314 ~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~ 362 (775)
. +|+|||+|.+.++|.+|+..|++..+. .++.|.|.|+.+.
T Consensus 157 ~------~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D------RKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLRVSFSKST 197 (198)
T ss_dssp T------SSCEEEECSSHHHHHHHHHHHTSSCCS--SCCSCCEEEECCC
T ss_pred C------CcEEEEEeCCHHHHHHHHHHhcCCccC--CCCeEEEEeeccc
Confidence 2 799999999999999999999998772 3899999998653
No 28
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.86 E-value=4.3e-22 Score=211.33 Aligned_cols=160 Identities=19% Similarity=0.366 Sum_probs=139.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..++|||+|||..+++++|+++|.+|| .|..|.|+.+.. +.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 477899999999999999999999999 999999998765 788999999999999999999999999999999999876
Q ss_pred C-------------CCCcccccCcccc-ccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHH
Q 004069 274 Q-------------DSDTLFLGNICKT-WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339 (775)
Q Consensus 274 ~-------------~~~~l~V~nLp~~-~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~ 339 (775)
. ..++|||+|||.. +++++|+++|..|| .|..|.++.+...++.++|||||+|.+.++|.+|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFG--SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS--CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccC--CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 3 2378999999999 99999999999999 89999998874335899999999999999999999
Q ss_pred HHcCCceeccCCCCceecccCC
Q 004069 340 RLQKRDVLFGVDRPAKVSFADS 361 (775)
Q Consensus 340 ~l~~~~i~~~~~~~l~v~~a~~ 361 (775)
.|++..+ .++.|.|.|+.+
T Consensus 272 ~l~g~~~---~g~~i~V~~a~~ 290 (292)
T 2ghp_A 272 QMNRSLL---GNREISVSLADK 290 (292)
T ss_dssp GGTTEEE---TTEEEEEEECCC
T ss_pred HhcCCEE---CCcEEEEEEecC
Confidence 9999876 489999999875
No 29
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=1.1e-18 Score=167.37 Aligned_cols=142 Identities=17% Similarity=0.270 Sum_probs=105.6
Q ss_pred eEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCcee----ccCCCCceecccCC-CCCCCccccccccceecCCCC
Q 004069 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL----FGVDRPAKVSFADS-FIDPGDEIMAQVKTVFVDGLP 382 (775)
Q Consensus 308 i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~----~~~~~~l~v~~a~~-~~~~~~~~~~~~~~l~V~nLp 382 (775)
+.|+.+. .+.+||+||+|.+.++|.+|++.+++.... ...+.......... ............++|||+|||
T Consensus 3 ~kl~ln~---~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 3 YKLILNG---KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEC---SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred EEEEecC---ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 4555442 367999999999999999999887643211 00112222111111 111122233456899999999
Q ss_pred CCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEeeccCC
Q 004069 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 383 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
..+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..+.+.++++
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 149 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARY 149 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999987 3344445444
No 30
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=2.7e-18 Score=190.97 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=73.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+.++|||+|||+.||+++|+++|.+||.|+.|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----r~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG----RRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC----EEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999987 3344
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
|.++.+
T Consensus 176 V~~a~~ 181 (437)
T 3pgw_S 176 VDVERG 181 (437)
T ss_pred EEEeCC
Confidence 444443
No 31
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=143.26 Aligned_cols=81 Identities=25% Similarity=0.467 Sum_probs=74.6
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
+.++|||+|||.++|+++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|++||..|||..|.| ..+.+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 45889999999999999999999999999999999999999999999999999999999999999999987 45556
Q ss_pred eccCC
Q 004069 452 RLSRP 456 (775)
Q Consensus 452 ~~~~~ 456 (775)
.+++|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 66665
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=2e-17 Score=149.68 Aligned_cols=96 Identities=22% Similarity=0.410 Sum_probs=72.1
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...+|||+|||+.+|+++|+++|.+||.|..|+|+.+. +.++|||||+|.+.++|.+||..|++..|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35679999999999999999999999999999999885 4479999999999999999999999999999999998763
Q ss_pred C--------------CCcccccCccccccHHH
Q 004069 275 D--------------SDTLFLGNICKTWTKEA 292 (775)
Q Consensus 275 ~--------------~~~l~V~nLp~~~te~~ 292 (775)
. .++|||+|||..+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 2 25799999999998763
No 33
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=5.9e-17 Score=153.90 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=99.9
Q ss_pred CCCccceEEeecCCHHHHHHHHHHH-cCCceeccCCCCceecccCCCC-----------CCCccccccccceecCCCCCC
Q 004069 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFI-----------DPGDEIMAQVKTVFVDGLPAS 384 (775)
Q Consensus 317 ~g~~kg~afVeF~s~e~A~~Al~~l-~~~~i~~~~~~~l~v~~a~~~~-----------~~~~~~~~~~~~l~V~nLp~~ 384 (775)
..+.+|+++|+|.+.+.|.+|++.+ ++..+ .+ .+.+.++.... ..........++|||+|||+.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGV---DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTC---CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCC---CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 3456899999999999999999999 77766 35 77777765421 112233346689999999999
Q ss_pred CCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 385 WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 385 ~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
+|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+||..|||..|.|..
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 999999999999999999999976 5899999999999999999999999998743
No 34
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=1.3e-16 Score=152.53 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=74.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.+ ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 355899999999999999999999999999999999999999999999999999999999999999999987 4444
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 5555543
No 35
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=1.1e-17 Score=170.18 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=69.0
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccC--CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
.++|||+||++.+|+++|+++|.+|| .|+.|.|++++.+++++|||||+|.+.++|++||..||+..|.|..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 47899999999999999999999999 99999999999999999999999999999999999999999997443
No 36
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=139.69 Aligned_cols=83 Identities=23% Similarity=0.427 Sum_probs=78.7
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
-...++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004069 273 SQD 275 (775)
Q Consensus 273 a~~ 275 (775)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=7.9e-16 Score=137.70 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=68.9
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+.++|||+||++.+|+++|+++|++||.|..|.|+++..|++++|||||+|.+.++|++||+.|||..|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999997
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=132.89 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=73.4
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 45899999999999999999999999999999999999899999999999999999999999999999986 33444
Q ss_pred eccCCC
Q 004069 452 RLSRPL 457 (775)
Q Consensus 452 ~~~~~~ 457 (775)
.++++.
T Consensus 83 ~~a~~~ 88 (99)
T 1whw_A 83 LPSTIK 88 (99)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 555443
No 39
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=1e-15 Score=140.77 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=72.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.|.. +.|.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~ 97 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP--ISVD 97 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB--CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE--EEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998744 4444
Q ss_pred eec
Q 004069 451 ARL 453 (775)
Q Consensus 451 ~~~ 453 (775)
.+.
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 443
No 40
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=3.6e-16 Score=145.51 Aligned_cols=114 Identities=16% Similarity=0.274 Sum_probs=72.3
Q ss_pred ceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEE
Q 004069 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEIT 401 (775)
Q Consensus 322 g~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~ 401 (775)
-++|+++.+...+..|++.+++.... +. ....+..+ .......++|||+|||..+|+++|+++|++||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~---g~-~~~~~~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQM---GR-GSMSYGRP-----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCS-----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCC---CC-CCCCcCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 35677777888888888887765442 11 12222222 12224568999999999999999999999999999
Q ss_pred EEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 402 KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 402 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
.|.|+.+..+++++|||||+|.+.++|++||..|||..|.|..
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 9999999999999999999999999999999999999998743
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=132.16 Aligned_cols=73 Identities=25% Similarity=0.479 Sum_probs=69.3
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|||..+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.|..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4589999999999999999999999999999999999999999999999999999999999999999998733
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-16 Score=135.60 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=71.3
Q ss_pred cceecCCCCCCCCHHHHHHHHhccC-CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC-CCccCCCcceEEEEe
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN-NAELGEGDNKAKVRA 451 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~-g~~~~g~~~~~~v~~ 451 (775)
++|||+|||.++|+++|+++|++|| .|..|.|++++.+++++|||||+|.+.++|++||+.|+ +..|.| ..|.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 7899999999999999999999999 89999999999999999999999999999999999875 456776 45666
Q ss_pred eccCCC
Q 004069 452 RLSRPL 457 (775)
Q Consensus 452 ~~~~~~ 457 (775)
.++.|+
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 666654
No 43
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=141.64 Aligned_cols=83 Identities=19% Similarity=0.454 Sum_probs=74.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+++..+++++|||||+|.+.++|.+||..|||..|.| ..|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 115 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----KRLK 115 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 355899999999999999999999999999999999999999999999999999999999999999999987 3455
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 116 v~~a~~~ 122 (139)
T 1u6f_A 116 VALAASG 122 (139)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 5555543
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=9.8e-16 Score=146.77 Aligned_cols=132 Identities=21% Similarity=0.315 Sum_probs=106.4
Q ss_pred EEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCc-ccC------ccccc------------cCCCCCCcccccCcc
Q 004069 225 EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV-ING------KQCGV------------TPSQDSDTLFLGNIC 285 (775)
Q Consensus 225 ~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~-~~g------r~i~V------------~~a~~~~~l~V~nLp 285 (775)
.++|+++.. .++|||||+|.+.++|++|+..+++.. +.+ ..... ......++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466776644 689999999999999999998876432 111 11111 111345799999999
Q ss_pred ccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCC
Q 004069 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364 (775)
Q Consensus 286 ~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~ 364 (775)
+.+++++|+++|..|| .|..|.|+.+ ..+++++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.....
T Consensus 80 ~~~~~~~l~~~F~~~G--~v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYG--RVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHS--CEEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcC--CeEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEEECCCCCC
Confidence 9999999999999999 8999999877 35789999999999999999999999999766 489999999976543
No 45
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-15 Score=135.19 Aligned_cols=81 Identities=23% Similarity=0.428 Sum_probs=71.8
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|++++.+++++|||||+|.+.++|++||..||+ .|.| ..|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~~l~ 89 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----RKAN 89 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----EEEE
Confidence 4558999999999999999999999999999999999999999999999999999999999999998 7876 3344
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++.+
T Consensus 90 V~~a~~ 95 (116)
T 2cqd_A 90 VNLAYL 95 (116)
T ss_dssp EEESTT
T ss_pred EEEccc
Confidence 444443
No 46
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.62 E-value=8.3e-16 Score=148.39 Aligned_cols=116 Identities=23% Similarity=0.355 Sum_probs=69.5
Q ss_pred eecCCHHHHHHHHHHHcCCceeccCCCCceecccCCC---------------CCCCccccccccceecCCCCCCCCHHHH
Q 004069 326 LEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF---------------IDPGDEIMAQVKTVFVDGLPASWDEDRV 390 (775)
Q Consensus 326 VeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~---------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L 390 (775)
.+|.+.++|..|+..|+...... .++.+.+.+.... ...........++|||+|||..+|+++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~-kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHR-KGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccc-cCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 67778888888887776644321 1333333321110 1111222344578999999999999999
Q ss_pred HHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 391 ~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||..|||..|.|
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 9999999999999999999999999999999999999999999999999987
No 47
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=132.87 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=74.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEE-EEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKI-ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
..++|||+|||..+|+++|+++|.+||.|..| .|++++.++.++|||||+|.+.++|++||..|||..|.| ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 35899999999999999999999999999999 999998999999999999999999999999999999986 4455
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++.+.
T Consensus 80 v~~a~~~ 86 (96)
T 1x5t_A 80 VSYAFKK 86 (96)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 5555543
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=133.65 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=79.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEE-EEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT-KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
..++|||+|||..+++++|+++|.+||.|. .|.|++++.+++++|||||+|.+.++|++||..|||..|.|....+.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 458999999999999999999999999999 9999999999999999999999999999999999999999877566677
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 7777654
No 49
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=136.29 Aligned_cols=72 Identities=24% Similarity=0.454 Sum_probs=68.1
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|++||..|||..|.|..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34899999999999999999999999999999999998 8999999999999999999999999999998743
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.60 E-value=8.6e-15 Score=132.20 Aligned_cols=83 Identities=20% Similarity=0.394 Sum_probs=74.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+++..++.++|||||+|.+.++|++||..|||..|.| ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 88 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 88 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 455899999999999999999999999999999999999899999999999999999999999999999987 4445
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 89 V~~a~~~ 95 (115)
T 2dgo_A 89 TNWATRK 95 (115)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 5555543
No 51
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=133.25 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=74.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||..|||..|.| ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 88 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LILN 88 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999987 4555
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 5555553
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=133.21 Aligned_cols=84 Identities=24% Similarity=0.531 Sum_probs=75.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+.++|||+|||..+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..||+..|.| ..+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 355899999999999999999999999999999999999999999999999999999999999999999986 4555
Q ss_pred eeccCCCC
Q 004069 451 ARLSRPLQ 458 (775)
Q Consensus 451 ~~~~~~~~ 458 (775)
+.++++..
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 56665543
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=3.6e-15 Score=126.20 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=72.3
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEeec
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~ 453 (775)
.+|||+|||..+++++|+++|.+||.|..|.|+++..+++++|||||+|.+.++|++|+..|||..|.| ..+.+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999986 4455555
Q ss_pred cCC
Q 004069 454 SRP 456 (775)
Q Consensus 454 ~~~ 456 (775)
+++
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
No 54
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=130.66 Aligned_cols=73 Identities=21% Similarity=0.518 Sum_probs=68.6
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||. ||+..|.|..
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 345899999999999999999999999999999999999999999999999999999999998 9999998743
No 55
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=5.2e-15 Score=133.68 Aligned_cols=82 Identities=20% Similarity=0.441 Sum_probs=74.8
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+++..+++++|||||+|.+.++|++||..||+..|.| ..|.+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 99 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRLKV 99 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999987 45556
Q ss_pred eccCCC
Q 004069 452 RLSRPL 457 (775)
Q Consensus 452 ~~~~~~ 457 (775)
.++++.
T Consensus 100 ~~a~~~ 105 (115)
T 2cpz_A 100 QLKRSK 105 (115)
T ss_dssp ECCCCS
T ss_pred EEcCCC
Confidence 666654
No 56
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=133.25 Aligned_cols=73 Identities=23% Similarity=0.408 Sum_probs=69.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999873
No 57
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.59 E-value=8.4e-16 Score=133.39 Aligned_cols=79 Identities=13% Similarity=0.307 Sum_probs=70.0
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCC--EEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc----cCCCcce
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGE--ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE----LGEGDNK 446 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~----~~g~~~~ 446 (775)
-++|||+|||+.+|+++|+++|++||. |..|+|++++.+++++|||||+|.+.++|++||+.|||.. |.|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G---- 84 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG---- 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT----
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC----
Confidence 389999999999999999999999995 6799999999999999999999999999999999999974 665
Q ss_pred EEEEeeccC
Q 004069 447 AKVRARLSR 455 (775)
Q Consensus 447 ~~v~~~~~~ 455 (775)
..|.+.+++
T Consensus 85 r~i~V~~Ak 93 (95)
T 2lkz_A 85 KTIGVDFAK 93 (95)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEcc
Confidence 445555544
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5e-15 Score=131.41 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=69.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3558999999999999999999999999999999999999999999999999999999999999999999873
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.7e-15 Score=129.37 Aligned_cols=82 Identities=20% Similarity=0.416 Sum_probs=73.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||..|||..|.| ..+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345899999999999999999999999999999999998 89999999999999999999999999999987 3455
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 5555543
No 60
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=9.2e-15 Score=130.48 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=69.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc-ceEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD-NKAKV 449 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-~~~~v 449 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.++. ....|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34589999999999999999999999999999999875 89999999999999999999999998632 22455
Q ss_pred EeeccCCCC
Q 004069 450 RARLSRPLQ 458 (775)
Q Consensus 450 ~~~~~~~~~ 458 (775)
.+.++.+..
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 666666543
No 61
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=4.6e-15 Score=126.74 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=68.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|+..|||..|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45899999999999999999999999999999999999899999999999999999999999999999987
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-15 Score=130.05 Aligned_cols=74 Identities=23% Similarity=0.514 Sum_probs=70.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|..
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998744
No 63
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=133.66 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=77.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...+|||+|||+.+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred C
Q 004069 275 D 275 (775)
Q Consensus 275 ~ 275 (775)
.
T Consensus 85 ~ 85 (110)
T 3s8s_A 85 K 85 (110)
T ss_dssp T
T ss_pred C
Confidence 3
No 64
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=129.87 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=73.1
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP---SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (775)
..++|||+|||..+|+++|+++|++||.|..|.|+.+.. +++++|||||+|.+.++|++||..|||..|.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 458999999999999999999999999999999998876 66899999999999999999999999999986 45
Q ss_pred EEeeccCCC
Q 004069 449 VRARLSRPL 457 (775)
Q Consensus 449 v~~~~~~~~ 457 (775)
+.+.++++.
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 555665543
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=9.9e-15 Score=130.87 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=74.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC------CCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN------NAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~------g~~~~g~~ 444 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+++..++.++|||||+|.+.++|++||..|| +..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g-- 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG-- 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS--
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC--
Confidence 355899999999999999999999999999999999999999999999999999999999999999 999986
Q ss_pred ceEEEEeeccCCC
Q 004069 445 NKAKVRARLSRPL 457 (775)
Q Consensus 445 ~~~~v~~~~~~~~ 457 (775)
..+.+.++.+.
T Consensus 91 --~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 --RQLKVDLAVTR 101 (111)
T ss_dssp --CEEEEECCCCC
T ss_pred --EEEEEEECCCC
Confidence 34455555543
No 66
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=5.5e-15 Score=128.87 Aligned_cols=80 Identities=16% Similarity=0.436 Sum_probs=72.8
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEee
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (775)
.++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|+..|||..|.| ..+.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987 444555
Q ss_pred ccCC
Q 004069 453 LSRP 456 (775)
Q Consensus 453 ~~~~ 456 (775)
++++
T Consensus 78 ~a~~ 81 (96)
T 2x1f_A 78 YSSN 81 (96)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 5544
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9e-15 Score=127.15 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=73.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+.++|||+|||..+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 88 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RRIR 88 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999999987 4455
Q ss_pred eeccC
Q 004069 451 ARLSR 455 (775)
Q Consensus 451 ~~~~~ 455 (775)
+.+++
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 55544
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-15 Score=130.25 Aligned_cols=73 Identities=22% Similarity=0.474 Sum_probs=69.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecC-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN-MPSAKRKDFGFVTFDTHDAAVTCAKSI-NNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~ 443 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+ ..+++++|||||+|.+.++|++||..| |+..|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 45589999999999999999999999999999999999 789999999999999999999999999 99999873
No 69
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.58 E-value=4.4e-15 Score=126.26 Aligned_cols=72 Identities=24% Similarity=0.492 Sum_probs=68.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|+..|||..|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345899999999999999999999999999999999999999999999999999999999999999999987
No 70
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=130.02 Aligned_cols=71 Identities=25% Similarity=0.497 Sum_probs=67.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|++||..|||..|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 35689999999999999999999999999999999998 899999999999999999999999999999873
No 71
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=1.4e-14 Score=128.07 Aligned_cols=76 Identities=25% Similarity=0.556 Sum_probs=66.6
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+.++|||+|||..+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|++||..||+..|.+ ..+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 76 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEG----ENIE 76 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCC----CEEE
Confidence 456899999999999999999999999999999997 4599999999999999999999999986 4555
Q ss_pred eeccCCCC
Q 004069 451 ARLSRPLQ 458 (775)
Q Consensus 451 ~~~~~~~~ 458 (775)
+.++++..
T Consensus 77 v~~a~~~~ 84 (103)
T 2dgu_A 77 IVFAKPPD 84 (103)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCc
Confidence 55555543
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=129.56 Aligned_cols=81 Identities=23% Similarity=0.522 Sum_probs=71.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS-AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
.+.++|||+|||..+|+++|+++|.+|| |..|.|+++..+ ++++|||||+|.+.++|++|| .||+..|.| ..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----KRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----EEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----cEE
Confidence 3458999999999999999999999999 999999999988 999999999999999999999 999999987 444
Q ss_pred EeeccCCC
Q 004069 450 RARLSRPL 457 (775)
Q Consensus 450 ~~~~~~~~ 457 (775)
.+.++++.
T Consensus 87 ~V~~a~~~ 94 (104)
T 1wi8_A 87 RVDVADQA 94 (104)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 55555543
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.6e-15 Score=132.53 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=74.8
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEE--------EEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEIT--------KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++|||+|||..+|+++|+++|.+||.|. .|.|+.++.+++++|||||+|.+.++|++||..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3558999999999999999999999999999 69999999999999999999999999999999999999986
Q ss_pred CcceEEEEeeccCCC
Q 004069 443 GDNKAKVRARLSRPL 457 (775)
Q Consensus 443 ~~~~~~v~~~~~~~~ 457 (775)
..+.+.++++.
T Consensus 93 ----~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 ----SKLKVSLARKK 103 (113)
T ss_dssp ----EECEEECSSCC
T ss_pred ----CEEEEEECCCC
Confidence 45556666554
No 74
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=2.7e-15 Score=131.90 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=68.0
Q ss_pred ccceecCCCCC------CCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 373 VKTVFVDGLPA------SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 373 ~~~l~V~nLp~------~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.++|||+|||. .+++++|+++|++||.|..|.|++++.|++++|||||+|.+.++|++||..|||..|.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 48899999999 99999999999999999999999999999999999999999999999999999999987
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1e-14 Score=129.01 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=72.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+|| |..|.|+++..+++++|||||+|.+.++|++|| .||+..|.| ..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 86 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----RSLR 86 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----EECE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----eEEE
Confidence 3458999999999999999999999997 999999999999999999999999999999999 899999987 4445
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 87 V~~a~~~ 93 (103)
T 2dng_A 87 VDIAEGR 93 (103)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 5555543
No 76
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=9.4e-15 Score=129.87 Aligned_cols=82 Identities=15% Similarity=0.381 Sum_probs=71.6
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-CCCcceEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL-GEGDNKAKV 449 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~-~g~~~~~~v 449 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||..||+..| .+....+.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3458999999999999999999999999999999999999999999999999999999999999999886 222344444
Q ss_pred Eee
Q 004069 450 RAR 452 (775)
Q Consensus 450 ~~~ 452 (775)
..+
T Consensus 91 ~~a 93 (106)
T 2dgp_A 91 KPA 93 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 444
No 77
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=126.57 Aligned_cols=72 Identities=28% Similarity=0.546 Sum_probs=69.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|++.|||..|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 455899999999999999999999999999999999999999999999999999999999999999999987
No 78
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.7e-15 Score=130.45 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=65.7
Q ss_pred cceecCCCCCCCCHHHHHHHHhccC--CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
.+|||+|||..+|+++|+++|++|| .|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 5799999999999999999999999 9999999999999999999999999999999999999999998743
No 79
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=132.21 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=74.2
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCc--eEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCC----cccCcccc
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGE--VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP----VINGKQCG 269 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~--v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~----~~~gr~i~ 269 (775)
-.||||+|||+.+|+++|+++|++||. |..|+|++++.++.++|||||+|.+.++|.+||+.||+. .|+|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 357999999999999999999999995 679999999999999999999999999999999999986 48999999
Q ss_pred ccCCCC
Q 004069 270 VTPSQD 275 (775)
Q Consensus 270 V~~a~~ 275 (775)
|.++++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 998865
No 80
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=8.7e-15 Score=131.06 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=73.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQ 99 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999987 3444
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++++
T Consensus 100 V~~a~~ 105 (110)
T 1oo0_B 100 VDWCFV 105 (110)
T ss_dssp EEESEE
T ss_pred EEEccc
Confidence 444443
No 81
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.8e-15 Score=132.07 Aligned_cols=83 Identities=20% Similarity=0.392 Sum_probs=74.5
Q ss_pred cccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
....++|||+|||..+|+++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||.. |+..|.| ..|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l 98 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVV 98 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEE
Confidence 34568999999999999999999999999999999999999999999999999999999999997 9999986 455
Q ss_pred EeeccCCC
Q 004069 450 RARLSRPL 457 (775)
Q Consensus 450 ~~~~~~~~ 457 (775)
.+.++.++
T Consensus 99 ~V~~a~~~ 106 (116)
T 1x4b_A 99 EPKRAVAR 106 (116)
T ss_dssp EEECCSSC
T ss_pred EEEECCCC
Confidence 66666654
No 82
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=8.8e-15 Score=125.56 Aligned_cols=81 Identities=10% Similarity=0.304 Sum_probs=73.2
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|+ .|||..|.| ..+.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEE
Confidence 3589999999999999999999999999999999999999999999999999999999999 999999987 44555
Q ss_pred eccCCC
Q 004069 452 RLSRPL 457 (775)
Q Consensus 452 ~~~~~~ 457 (775)
.++++.
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 555543
No 83
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.56 E-value=7.8e-15 Score=132.50 Aligned_cols=78 Identities=23% Similarity=0.401 Sum_probs=68.5
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEee
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (775)
.++|||+|||..+|+++|+++|++||.|..|+|+++. +.++|||||+|.+.++|++||..|||..|.| ..+.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEE
Confidence 3689999999999999999999999999999999985 4579999999999999999999999999987 334444
Q ss_pred ccCC
Q 004069 453 LSRP 456 (775)
Q Consensus 453 ~~~~ 456 (775)
++++
T Consensus 79 ~a~~ 82 (115)
T 4f25_A 79 RFKS 82 (115)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 4444
No 84
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=2.1e-14 Score=127.35 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=70.8
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc-ceEEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD-NKAKVR 450 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-~~~~v~ 450 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||..|||..|.++. ..+.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45899999999999999999999999999999999997 7999999999999999999999999999998631 334444
Q ss_pred ee
Q 004069 451 AR 452 (775)
Q Consensus 451 ~~ 452 (775)
.+
T Consensus 93 ~a 94 (105)
T 2dnh_A 93 FA 94 (105)
T ss_dssp ES
T ss_pred EC
Confidence 33
No 85
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=128.61 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=72.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.|.. +.|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP--ISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB--CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE--EEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998743 4444
Q ss_pred eec
Q 004069 451 ARL 453 (775)
Q Consensus 451 ~~~ 453 (775)
.+.
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 443
No 86
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=128.77 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=71.7
Q ss_pred cccceecCCCCCCCCHHHHHHHHhc-cCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc-cCCCcceEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKN-YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-LGEGDNKAKV 449 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~-~~g~~~~~~v 449 (775)
+.++|||+|||..+|+++|+++|.+ ||.|..|.|+.+. +++++|||||+|.+.++|++||..||+.. |.|.. +
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~----l 82 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP----V 82 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC----C
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe----E
Confidence 4589999999999999999999999 9999999999998 99999999999999999999999999999 88733 4
Q ss_pred EeeccCC
Q 004069 450 RARLSRP 456 (775)
Q Consensus 450 ~~~~~~~ 456 (775)
.+.++.+
T Consensus 83 ~v~~a~~ 89 (104)
T 2dhg_A 83 RLSVAIP 89 (104)
T ss_dssp CCCBCCC
T ss_pred EEEEccC
Confidence 4444444
No 87
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=4.9e-15 Score=133.83 Aligned_cols=103 Identities=16% Similarity=0.304 Sum_probs=92.8
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...+|||+|||..+|+++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4678999999999999999999999999999999865 4569999999999999999999999999999999999986
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCC
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGV 302 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~ 302 (775)
.... ..+++...++++|.++|+++|.
T Consensus 84 ~~~~--~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRA--FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHH--TTTSCHHHHHHHHHHHHHHHCC
T ss_pred CChh--hhhhhHhHhHHHHHHHHHHhCC
Confidence 5432 2788888999999999999983
No 88
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=3e-15 Score=152.19 Aligned_cols=79 Identities=22% Similarity=0.438 Sum_probs=74.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccC--ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
..++|||+||++.+|+++|+++|.+|| .|+.|+|++++.+++++|||||+|.+.++|++||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999998886
Q ss_pred C
Q 004069 273 S 273 (775)
Q Consensus 273 a 273 (775)
+
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 5
No 89
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=130.98 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=74.8
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc-CCcccCccccccCCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK-NPVINGKQCGVTPSQ 274 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~-~~~~~gr~i~V~~a~ 274 (775)
.+|||+|||+.+|+++|+++|++|| .|..|+|++++.++.++|||||+|.+.++|.+||+.|+ +..|.|+.|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999999999999999999999999999999874 567999999999886
Q ss_pred CCC
Q 004069 275 DSD 277 (775)
Q Consensus 275 ~~~ 277 (775)
+..
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 90
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3e-14 Score=128.34 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=67.2
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||..||+..|.|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 345899999999999999999999999999999999987 59999999999999999999999999999986
No 91
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=128.43 Aligned_cols=78 Identities=22% Similarity=0.384 Sum_probs=70.8
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|++||.|..|.|+++.. ++++|||||+|.+.++|.+||. +|+..|.|..+.+.+..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 348999999999999999999999999999999999987 9999999999999999999999 99999998665554433
No 92
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=127.91 Aligned_cols=83 Identities=22% Similarity=0.431 Sum_probs=75.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||.. |+..|.| ..|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~l~ 88 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----RNID 88 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----EEEB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----EEEE
Confidence 3458999999999999999999999999999999999999999999999999999999999998 9999987 5566
Q ss_pred eeccCCCC
Q 004069 451 ARLSRPLQ 458 (775)
Q Consensus 451 ~~~~~~~~ 458 (775)
+.++.+..
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 66666543
No 93
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=1e-14 Score=134.42 Aligned_cols=82 Identities=26% Similarity=0.384 Sum_probs=73.8
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+.++|||+|||..+|+++|+++|.+||.|..|.|++++.+++++|||||+|.+.++|++||..|||..|.|. .|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~----~l~ 119 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR----RIR 119 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS----CCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE----EEE
Confidence 3558999999999999999999999999999999999999999999999999999999999999999999873 344
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++.+
T Consensus 120 V~~a~~ 125 (129)
T 2kxn_B 120 VDFSIT 125 (129)
T ss_dssp ESCCSS
T ss_pred EEEecC
Confidence 455544
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=128.81 Aligned_cols=74 Identities=26% Similarity=0.469 Sum_probs=69.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.|..
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45589999999999999999999999999999999999999999999999999999999999999999998733
No 95
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3e-14 Score=127.31 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=70.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|++||+.||+..|.+ ..|.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 34589999999999999999999999999999999654 5679999999999999999999999999986 4556
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 6666653
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.55 E-value=3.3e-15 Score=128.62 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccC--ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
.+|||+|||+.+|+++|+++|.+|| .|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 97
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=126.19 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=70.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEE--------EEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK--------IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++|||+|||..+|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||+.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45689999999999999999999999999999 9999999999999999999999999999999999999987
Q ss_pred Ccc
Q 004069 443 GDN 445 (775)
Q Consensus 443 ~~~ 445 (775)
..+
T Consensus 91 ~~l 93 (99)
T 2la6_A 91 NPI 93 (99)
T ss_dssp SBC
T ss_pred cEE
Confidence 543
No 98
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=9.9e-15 Score=124.90 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=70.8
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK-RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~-~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
.++|||+|||..+|+++|+++|.+||.|..|.|+.+..++. ++|||||+|.+.++|++|+..|||..|.| ..+.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEE
Confidence 48999999999999999999999999999999999887765 89999999999999999999999999987 33444
Q ss_pred eccCC
Q 004069 452 RLSRP 456 (775)
Q Consensus 452 ~~~~~ 456 (775)
.++.+
T Consensus 80 ~~a~~ 84 (88)
T 4a8x_A 80 TAVLA 84 (88)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 44443
No 99
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.8e-14 Score=124.58 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=70.6
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|++||..||+..|.| ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 4568999999999999999999999999999999998854 389999999999999999999999999987 4444
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 87 v~~a~~~ 93 (103)
T 2cq3_A 87 VNNATAR 93 (103)
T ss_dssp EEECCSS
T ss_pred EEEcccC
Confidence 4555443
No 100
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=124.97 Aligned_cols=82 Identities=27% Similarity=0.512 Sum_probs=77.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999999885
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 101
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=127.86 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=78.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=126.25 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=67.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCCcceEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGEGDNKAK 448 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~~~~~ 448 (775)
...++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|++||..|++ ..|.| ..
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~ 83 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QP 83 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC----EE
Confidence 34589999999999999999999999999999999976 79999999999999999998864 67876 56
Q ss_pred EEeeccCCCC
Q 004069 449 VRARLSRPLQ 458 (775)
Q Consensus 449 v~~~~~~~~~ 458 (775)
+.+.+++++.
T Consensus 84 l~V~~A~~~~ 93 (105)
T 1sjq_A 84 IYIQFSNHKE 93 (105)
T ss_dssp CCBCCCSSSS
T ss_pred EEEEEcCCCC
Confidence 6666666543
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.3e-14 Score=125.67 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=70.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+..+ ++|||||+|.+.++|++||..||+..|.| ..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 34589999999999999999999999999999999998543 68999999999999999999999999986 4555
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 5665553
No 104
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.54 E-value=1.6e-14 Score=122.07 Aligned_cols=80 Identities=24% Similarity=0.478 Sum_probs=76.4
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~ 276 (775)
++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999899999999999999999999999999999999999999987653
No 105
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=1e-14 Score=127.14 Aligned_cols=87 Identities=26% Similarity=0.450 Sum_probs=80.8
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999977
Q ss_pred CCccccc
Q 004069 276 SDTLFLG 282 (775)
Q Consensus 276 ~~~l~V~ 282 (775)
.......
T Consensus 82 ~~~~~~~ 88 (96)
T 2x1f_A 82 SDISGVS 88 (96)
T ss_dssp SSGGGHH
T ss_pred CCCCCcc
Confidence 7654433
No 106
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=2.2e-14 Score=123.90 Aligned_cols=79 Identities=19% Similarity=0.407 Sum_probs=70.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+++ +++++|||||+|.+.++|++||..||+..|.|.. +.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~----l~v 80 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE----IDV 80 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC----CCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE----EEE
Confidence 4589999999999999999999999999999999984 7889999999999999999999999999998743 344
Q ss_pred eccCC
Q 004069 452 RLSRP 456 (775)
Q Consensus 452 ~~~~~ 456 (775)
.++++
T Consensus 81 ~~a~~ 85 (92)
T 2dgv_A 81 RIDRN 85 (92)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 44444
No 107
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.4e-14 Score=130.82 Aligned_cols=78 Identities=19% Similarity=0.418 Sum_probs=65.3
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcce-EEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK-AKVR 450 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~-~~v~ 450 (775)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.|..++ +.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999999865 8999999999999999999999999985522 2234
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+....+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 444444
No 108
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=123.78 Aligned_cols=81 Identities=23% Similarity=0.478 Sum_probs=75.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999998775
Q ss_pred C
Q 004069 275 D 275 (775)
Q Consensus 275 ~ 275 (775)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 109
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=6.3e-15 Score=129.54 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=75.9
Q ss_pred CccEEEEcCCCC------CCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC-cc
Q 004069 195 KEFEVFVGGLDK------DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQ 267 (775)
Q Consensus 195 ~~~~l~V~nLp~------~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g-r~ 267 (775)
..++|||+|||+ .+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+||..||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccccCCC
Q 004069 268 CGVTPSQ 274 (775)
Q Consensus 268 i~V~~a~ 274 (775)
|.|.++.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9998763
No 110
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=124.28 Aligned_cols=71 Identities=30% Similarity=0.437 Sum_probs=67.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++|||+|||..+++++|+++|++||.|..|.|+.+.. ++++|||||+|.+.++|++||..||+..|.|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3458999999999999999999999999999999999875 8999999999999999999999999999987
No 111
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=1.4e-14 Score=123.18 Aligned_cols=80 Identities=26% Similarity=0.533 Sum_probs=76.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999875
No 112
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=137.27 Aligned_cols=71 Identities=11% Similarity=0.269 Sum_probs=67.8
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccC--CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..++|||+|||+.+|+++|+++|.+|| .|..|.|+.++.+|+++|||||+|.+.++|++||..|||..|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 348999999999999999999999999 99999999999999999999999999999999999999999987
No 113
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.2e-14 Score=123.08 Aligned_cols=81 Identities=20% Similarity=0.417 Sum_probs=70.8
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||. ++..|.| ..+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~l~ 86 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RWCD 86 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eEEE
Confidence 345899999999999999999999999999999999999999999999999999999999998 4667776 4455
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++.+.
T Consensus 87 v~~a~~~ 93 (103)
T 2cqg_A 87 CKLPNSK 93 (103)
T ss_dssp EECCCTT
T ss_pred EEecCCC
Confidence 5555543
No 114
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=126.19 Aligned_cols=84 Identities=33% Similarity=0.471 Sum_probs=78.7
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCCC
Q 004069 274 QDSD 277 (775)
Q Consensus 274 ~~~~ 277 (775)
....
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6554
No 115
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=126.93 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=67.7
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..++|||+|||..+++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||..|||..|.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 44889999999999999999999999999989899888899999999999999999999999999999987
No 116
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=124.67 Aligned_cols=82 Identities=29% Similarity=0.540 Sum_probs=77.0
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 346789999999999999999999999999999999998899999999999999999999999 9999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 117
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=123.76 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=66.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cCCCcceEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE--LGEGDNKAK 448 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~~~~~ 448 (775)
.+.++|||+|||..+|+++|+++|++||.|..|.|++. +|||||+|.+.++|.+|+..||+.. |.| ..
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~ 88 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG----HP 88 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cE
Confidence 35589999999999999999999999999999999864 8999999999999999999999986 555 45
Q ss_pred EEeeccCC
Q 004069 449 VRARLSRP 456 (775)
Q Consensus 449 v~~~~~~~ 456 (775)
+.+.+++.
T Consensus 89 i~V~~S~~ 96 (100)
T 3r27_A 89 AFVNYSTS 96 (100)
T ss_dssp EEEEECSC
T ss_pred EEEEeccc
Confidence 66666654
No 118
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.9e-14 Score=123.45 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=69.4
Q ss_pred cccceecCCCCCCCCHHHHH----HHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceE
Q 004069 372 QVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (775)
..++|||+|||..+++++|+ ++|.+||.|..|.|+.+..+ +|||||+|.+.++|++||..|||..|.| .
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r 80 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS----K 80 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 44899999999999999999 99999999999999988765 8899999999999999999999999987 4
Q ss_pred EEEeeccCC
Q 004069 448 KVRARLSRP 456 (775)
Q Consensus 448 ~v~~~~~~~ 456 (775)
.+.+.++++
T Consensus 81 ~l~V~~a~~ 89 (96)
T 2dgx_A 81 KILVSLATG 89 (96)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 455555554
No 119
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=2.8e-14 Score=126.99 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=68.4
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||..|||..|.|.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 345899999999999999999999999999999999998 999999999999999999999999999999873
No 120
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2.2e-14 Score=130.19 Aligned_cols=74 Identities=22% Similarity=0.428 Sum_probs=69.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+++..+++++|||||+|.+.++|++||..|||..|.|..
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999998733
No 121
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=128.43 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=64.3
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|||+.+|+++|+++|.+||.| .|.|++++ +++++|||||+|.+.++|++||. +|+..|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY 83 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 44899999999999999999999999955 99999997 89999999999999999999995 8999998743
No 122
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=127.14 Aligned_cols=83 Identities=27% Similarity=0.432 Sum_probs=78.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 123
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=2.5e-14 Score=131.00 Aligned_cols=81 Identities=11% Similarity=0.283 Sum_probs=72.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|.| ..+.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 108 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIK 108 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999 799999987 4455
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++++
T Consensus 109 V~~a~~ 114 (124)
T 2jwn_A 109 VLPKRT 114 (124)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 555554
No 124
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.52 E-value=1.8e-14 Score=136.67 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=104.5
Q ss_pred CCCCcceEEEEEccHHHHHHHHHhh-cCCcccCccccccCCC----------------------CCCcccccCccccccH
Q 004069 234 TKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVTPSQ----------------------DSDTLFLGNICKTWTK 290 (775)
Q Consensus 234 ~g~~~g~afV~F~s~e~A~~Al~~l-~~~~~~gr~i~V~~a~----------------------~~~~l~V~nLp~~~te 290 (775)
....+|+++|+|.+.++|++|+..| |+..+.| .|.|.++. ..++|||+|||+.+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3567899999999999999999999 9999999 88887653 2478999999999999
Q ss_pred HHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCC
Q 004069 291 EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF 362 (775)
Q Consensus 291 ~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~ 362 (775)
++|+++|.+|| .|..|.++.+ ++|||||+|.+.++|.+|+..|++..+ .+++|.|.|+.+.
T Consensus 88 ~~l~~~F~~~G--~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYG--PLRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL---CGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHS--CEEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSCCEEEECCCC
T ss_pred HHHHHHHHhhC--CEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEEcCCC
Confidence 99999999999 8999999866 489999999999999999999999876 4899999998653
No 125
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=121.52 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=76.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999998875
Q ss_pred C
Q 004069 274 Q 274 (775)
Q Consensus 274 ~ 274 (775)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 126
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=127.67 Aligned_cols=83 Identities=28% Similarity=0.458 Sum_probs=78.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34678999999999999999999999999999999999989999999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 543
No 127
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=127.56 Aligned_cols=74 Identities=19% Similarity=0.512 Sum_probs=69.8
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..|||..|.|..
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 35589999999999999999999999999999999999999999999999999999999999999999998743
No 128
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=124.49 Aligned_cols=81 Identities=27% Similarity=0.487 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred C
Q 004069 275 D 275 (775)
Q Consensus 275 ~ 275 (775)
.
T Consensus 94 ~ 94 (95)
T 2cqc_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 129
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=3.2e-14 Score=128.39 Aligned_cols=83 Identities=24% Similarity=0.514 Sum_probs=78.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 554
No 130
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=129.93 Aligned_cols=81 Identities=15% Similarity=0.266 Sum_probs=72.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|| .|||..|.| ..|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEE
Confidence 35589999999999999999999999999999999999999999999999999999999999 999999987 3444
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++++
T Consensus 98 V~~a~~ 103 (114)
T 2cq4_A 98 VQASQA 103 (114)
T ss_dssp EEEHHH
T ss_pred EEecCC
Confidence 444443
No 131
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=125.17 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=64.6
Q ss_pred cccceecCCCCC-CCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--ccCCCcceEE
Q 004069 372 QVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA--ELGEGDNKAK 448 (775)
Q Consensus 372 ~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~~~~~ 448 (775)
+.++|||+|||+ .+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||..||+. .|.| ..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~ 83 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFG----KP 83 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETT----EE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECC----cE
Confidence 458999999999 9999999999999999999999976 689999999999999999999875 4776 34
Q ss_pred EEeeccCC
Q 004069 449 VRARLSRP 456 (775)
Q Consensus 449 v~~~~~~~ 456 (775)
|.+.+++.
T Consensus 84 l~V~~a~~ 91 (102)
T 1x4d_A 84 VRVHLSQK 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 44455443
No 132
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=124.33 Aligned_cols=80 Identities=26% Similarity=0.472 Sum_probs=75.8
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 34567999999999999999999999999999999999888999999999999999999999999999999999999875
No 133
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.3e-15 Score=124.61 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=68.3
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+..|||..|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 45899999999999999999999999999999999999999999999999999999999999999999976
No 134
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=127.19 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=72.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
....+|||+|||+++|+++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||. +++..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456799999999999999999999999999999999977 9999999999999999999999 8999999999998764
No 135
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=2.6e-14 Score=129.06 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=77.7
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+++++|+++|.+||.|..|+|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 136
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=1.9e-14 Score=138.81 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=77.0
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004069 274 QD 275 (775)
Q Consensus 274 ~~ 275 (775)
..
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 137
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=5.1e-14 Score=125.79 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=69.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+++..+++++|||||+|.+.++|.+||..+ +..|.| ..+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 45589999999999999999999999999999999999999999999999999999999999976 488876 3344
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++.+
T Consensus 98 V~~a~~ 103 (109)
T 2rs2_A 98 PKVAFP 103 (109)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 444443
No 138
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=126.93 Aligned_cols=83 Identities=30% Similarity=0.609 Sum_probs=77.7
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
No 139
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=120.97 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=64.0
Q ss_pred cceecCCCCCCC------CHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 374 KTVFVDGLPASW------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 374 ~~l~V~nLp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
++|||+|||..+ |+++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|++||..|||..|.|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 689999999999 789999999999999999988 45899999999999999999999999999999875
No 140
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.50 E-value=4.9e-14 Score=120.36 Aligned_cols=71 Identities=15% Similarity=0.392 Sum_probs=66.4
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+. +++..|.|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 345899999999999999999999999999999999999999999999999999999999996 57888876
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-15 Score=137.55 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=73.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEE--------EEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK--------IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.+.++|||+|||..+++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34589999999999999999999999999998 9999998899999999999999999999999999999987
Q ss_pred CcceEEEEeeccCCC
Q 004069 443 GDNKAKVRARLSRPL 457 (775)
Q Consensus 443 ~~~~~~v~~~~~~~~ 457 (775)
..+.+.++++.
T Consensus 85 ----~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 ----NPIKVSFATRR 95 (116)
Confidence 34445555543
No 142
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=3.5e-14 Score=118.79 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=68.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
....|+|+||++.+|+++|+++|.+||+|..++++. ++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999964 5999999999999999999999999999999999876
No 143
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=4.1e-14 Score=121.31 Aligned_cols=80 Identities=25% Similarity=0.538 Sum_probs=75.9
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
.++|||+|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 467999999999999999999999999999999999889999999999999999999999 8999999999999998755
Q ss_pred C
Q 004069 276 S 276 (775)
Q Consensus 276 ~ 276 (775)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 144
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.8e-14 Score=125.89 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=77.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004069 274 QD 275 (775)
Q Consensus 274 ~~ 275 (775)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 145
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=2.3e-14 Score=118.68 Aligned_cols=70 Identities=23% Similarity=0.476 Sum_probs=66.2
Q ss_pred ceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
+|||+|||..+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+. ||+..|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 58999999999999999999999999999999999899999999999999999999998 99999987543
No 146
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=126.81 Aligned_cols=84 Identities=32% Similarity=0.497 Sum_probs=77.0
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC-
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD- 275 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~- 275 (775)
++|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 689999999999999999999999999999999987732
Q ss_pred ---------------CCcccccCcc
Q 004069 276 ---------------SDTLFLGNIC 285 (775)
Q Consensus 276 ---------------~~~l~V~nLp 285 (775)
..+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 3679999986
No 147
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=1.5e-14 Score=125.78 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=67.5
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..||+..|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34899999999999999999999999999999999998899999999999999999999999999999987
No 148
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-14 Score=124.95 Aligned_cols=83 Identities=23% Similarity=0.468 Sum_probs=77.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEE-EEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV-RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v-~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
...++|||+|||..+|+++|+++|.+||.|..| .|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356789999999999999999999999999999 9999988999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8543
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-13 Score=120.70 Aligned_cols=79 Identities=25% Similarity=0.523 Sum_probs=68.6
Q ss_pred cccccccceecCCCCCCCCHHHHHHHHhcc--CCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 368 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
......++|||+|||..+|+++|+++|.+| |.|..|.+. +|||||+|.+.++|++||..|||..|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 78 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDG--- 78 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETT---
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 344566899999999999999999999999 999999886 6799999999999999999999999986
Q ss_pred eEEEEeeccCCCC
Q 004069 446 KAKVRARLSRPLQ 458 (775)
Q Consensus 446 ~~~v~~~~~~~~~ 458 (775)
..+.+.++++..
T Consensus 79 -~~l~v~~a~~~~ 90 (99)
T 2cpd_A 79 -SPIEVTLAKPVD 90 (99)
T ss_dssp -EEEEEECCCCCC
T ss_pred -cEEEEEECCCCC
Confidence 556666666543
No 150
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=124.85 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCC---CCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ---TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~---~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+.. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467899999999999999999999999999999998876 56899999999999999999999999999999999999
Q ss_pred CCCCC
Q 004069 272 PSQDS 276 (775)
Q Consensus 272 ~a~~~ 276 (775)
++...
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 88654
No 151
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.1e-14 Score=123.20 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=70.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|..|+ .|.|+.+..+++++|||||+|.+.++|++||..||+..|.| ..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NKVT 85 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eEEE
Confidence 4558999999999999999999999874 67888888899999999999999999999999999999987 4556
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 86 V~~a~~~ 92 (102)
T 2fc8_A 86 LDWAKPK 92 (102)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 6666654
No 152
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=124.23 Aligned_cols=82 Identities=26% Similarity=0.433 Sum_probs=76.7
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 446789999999999999999999999999999999987 8999999999999999999999999999999999999887
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 153
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.9e-14 Score=126.44 Aligned_cols=84 Identities=18% Similarity=0.411 Sum_probs=73.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc----ceE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD----NKA 447 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~----~~~ 447 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|.+.. ...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45899999999999999999999999999999999998 8999999999999999999999999999996533 123
Q ss_pred EEEeeccCC
Q 004069 448 KVRARLSRP 456 (775)
Q Consensus 448 ~v~~~~~~~ 456 (775)
.+.+.++.|
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 345555554
No 154
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=121.20 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=65.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCCcceEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN--NAELGEGDNKAK 448 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~~~~~ 448 (775)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|++||..|+ +..|.| ..
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~ 82 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRN----QP 82 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC----cE
Confidence 35589999999999999999999999999999999875 8999999999999999999774 667876 44
Q ss_pred EEeeccCCC
Q 004069 449 VRARLSRPL 457 (775)
Q Consensus 449 v~~~~~~~~ 457 (775)
+.+.+++++
T Consensus 83 l~V~~a~~~ 91 (101)
T 2cq1_A 83 IYIQYSNHK 91 (101)
T ss_dssp CEEEECSCS
T ss_pred EEEEEcCcc
Confidence 555555543
No 155
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.4e-14 Score=126.71 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=71.6
Q ss_pred cccceecCCCCCCCCHHHHH---HHHhccCCEEEEEEecCCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 372 QVKTVFVDGLPASWDEDRVR---ELLKNYGEITKIELARNMPSA---KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~---~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
..++|||+|||+.+++++|+ ++|.+||.|..|.|+++..++ +++|||||+|.+.++|++||..|||..|.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--- 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG--- 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC---
Confidence 34899999999999999999 999999999999999987754 556999999999999999999999999987
Q ss_pred eEEEEeeccCCC
Q 004069 446 KAKVRARLSRPL 457 (775)
Q Consensus 446 ~~~v~~~~~~~~ 457 (775)
..+.+.++.++
T Consensus 91 -r~l~V~~a~~k 101 (111)
T 2cpi_A 91 -RTLKASLGTTK 101 (111)
T ss_dssp -EEEEEESCCCC
T ss_pred -EEEEEEecccc
Confidence 45555665554
No 156
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=4.5e-14 Score=118.15 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=60.8
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+.-|||+||++.+|+++|+++|.+||.|..|+|.. ++|||||+|.+.++|.+||+.||+..|.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 36799999999999999999999999999999976 49999999999999999999999999987
No 157
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.4e-14 Score=125.71 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=78.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeec-CCCCCCcceEEEEEccHHHHHHHHHhh-cCCcccCcccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN-PQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVT 271 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d-~~~g~~~g~afV~F~s~e~A~~Al~~l-~~~~~~gr~i~V~ 271 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|.+||..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34678999999999999999999999999999999998 778999999999999999999999999 9999999999999
Q ss_pred CCCCCC
Q 004069 272 PSQDSD 277 (775)
Q Consensus 272 ~a~~~~ 277 (775)
++....
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 886554
No 158
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=4.3e-14 Score=130.24 Aligned_cols=83 Identities=28% Similarity=0.457 Sum_probs=78.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|++..|.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 654
No 159
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.8e-14 Score=127.03 Aligned_cols=82 Identities=26% Similarity=0.519 Sum_probs=77.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 91 ~~ 92 (102)
T 2cqb_A 91 PM 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 160
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.2e-14 Score=126.71 Aligned_cols=83 Identities=28% Similarity=0.453 Sum_probs=78.0
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc------CCcccCcc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK------NPVINGKQ 267 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~------~~~~~gr~ 267 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346779999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccCCCCC
Q 004069 268 CGVTPSQDS 276 (775)
Q Consensus 268 i~V~~a~~~ 276 (775)
|.|.++...
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999988554
No 161
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=125.72 Aligned_cols=83 Identities=27% Similarity=0.548 Sum_probs=78.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 654
No 162
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9e-14 Score=122.34 Aligned_cols=79 Identities=24% Similarity=0.403 Sum_probs=68.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.| .|+.+ .+++++|||||+|.+.++|++||..||+..|.+ ..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 84 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIR 84 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEE
Confidence 355899999999999999999999999976 56666 678999999999999999999999999999986 4556
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 6666554
No 163
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.4e-14 Score=123.85 Aligned_cols=83 Identities=18% Similarity=0.364 Sum_probs=77.6
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceE-EEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcc----c
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT-EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ----C 268 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~-~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~----i 268 (775)
...++|||+|||..+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567899999999999999999999999999 9999999999999999999999999999999999999999999 8
Q ss_pred cccCCCCC
Q 004069 269 GVTPSQDS 276 (775)
Q Consensus 269 ~V~~a~~~ 276 (775)
.|.++...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 88887544
No 164
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=122.56 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=75.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+.. +.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4467899999999999999999999999999999999876 889999999999999999999999999999999999887
Q ss_pred C
Q 004069 274 Q 274 (775)
Q Consensus 274 ~ 274 (775)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=126.44 Aligned_cols=72 Identities=25% Similarity=0.521 Sum_probs=65.8
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM-PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||..+++++|+++|++|| |..|.|+++. .+|+++|||||+|.+.++|++|| .|||..|.|..
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 4558999999999999999999999999 9999999998 68999999999999999999999 89999998743
No 166
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=123.77 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=76.0
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEE--------EEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~--------v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
...++|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45678999999999999999999999999999 9999998999999999999999999999999999999999
Q ss_pred ccccccCC
Q 004069 266 KQCGVTPS 273 (775)
Q Consensus 266 r~i~V~~a 273 (775)
+.|.|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999875
No 167
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.8e-14 Score=124.02 Aligned_cols=80 Identities=33% Similarity=0.561 Sum_probs=75.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4677999999999999999999999999999999987 78999999999999999999999999999999999999885
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 168
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=1e-14 Score=135.67 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=64.8
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||+++|+++|+++|++|| |+.|.|++++. ++++|||||+|.+.++|++|| .||+..|.+..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 3458999999999999999999999999 67999999976 999999999999999999999 79999998743
No 169
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=9.4e-14 Score=121.25 Aligned_cols=78 Identities=18% Similarity=0.413 Sum_probs=66.2
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+.++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+..||+..|.+....+ .
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l--~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL--R 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC--E
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE--E
Confidence 34589999999999999999999999999999999865 789999999999999999999999998322334 4
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++++
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 444444
No 170
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.7e-14 Score=123.44 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=76.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccc-cCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCc-ccCcccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQ-VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV-INGKQCGVT 271 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~-~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~-~~gr~i~V~ 271 (775)
...++|||+|||+.+|+++|+++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+.. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34678999999999999999999999 9999999999998 89999999999999999999999999999 999999999
Q ss_pred CCCCC
Q 004069 272 PSQDS 276 (775)
Q Consensus 272 ~a~~~ 276 (775)
++...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 88544
No 171
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.5e-13 Score=121.29 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=59.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE--LGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g 442 (775)
.+.++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||..||+.. |.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 35589999999999999999999999999999999865 8999999999999999999987654 665
No 172
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=131.55 Aligned_cols=73 Identities=12% Similarity=0.248 Sum_probs=68.4
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEE--EEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----ccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK--IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA----ELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~----~~~g~~ 444 (775)
...++|||+|||+.+|+++|+++|.+||.|.. |+|++++.+|+++|||||+|.+. +|.+||..|||. .|.|..
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45589999999999999999999999999976 99999999999999999999999 999999999999 998744
No 173
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=6.8e-14 Score=123.62 Aligned_cols=80 Identities=23% Similarity=0.501 Sum_probs=75.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+|+++|+++|.+|| |..|.|+.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 467899999999999999999999997 999999999999999999999999999999999 899999999999999875
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 92 ~~ 93 (103)
T 2dng_A 92 GR 93 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 174
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.48 E-value=3.8e-14 Score=125.90 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=77.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc---cCccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI---NGKQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~---~gr~i~V 270 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3467899999999999999999999999999999999988999999999999999999999999999887 8899999
Q ss_pred cCCCCC
Q 004069 271 TPSQDS 276 (775)
Q Consensus 271 ~~a~~~ 276 (775)
.++...
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 888554
No 175
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-14 Score=119.41 Aligned_cols=71 Identities=23% Similarity=0.392 Sum_probs=66.8
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+..+| ..|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 479999999999999999999999999999999999999999999999999999999999999 88887543
No 176
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.48 E-value=4.8e-14 Score=120.41 Aligned_cols=80 Identities=26% Similarity=0.546 Sum_probs=73.9
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999999999999999999999999999997 578889999999875
Q ss_pred C
Q 004069 273 S 273 (775)
Q Consensus 273 a 273 (775)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 177
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=118.76 Aligned_cols=73 Identities=22% Similarity=0.503 Sum_probs=64.5
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|++|+..||+..|.|. .+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v 74 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV----NINV 74 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC----BCEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc----EEEE
Confidence 45899999999999999999999999999999997 67999999999999999999999999873 3444
Q ss_pred eccCC
Q 004069 452 RLSRP 456 (775)
Q Consensus 452 ~~~~~ 456 (775)
.++++
T Consensus 75 ~~a~~ 79 (90)
T 2dnq_A 75 EASKN 79 (90)
T ss_dssp ECSSC
T ss_pred EECCC
Confidence 44444
No 178
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.7e-14 Score=120.22 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=69.3
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|.+| .|..|.|+++ .+|+++|||||+|.+.++|++||. ||+..|.| ..|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i~v 81 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYIEV 81 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEEEE
Confidence 44899999999999999999999999 9999999999 789999999999999999999999 99999987 33444
Q ss_pred eccCC
Q 004069 452 RLSRP 456 (775)
Q Consensus 452 ~~~~~ 456 (775)
.++.+
T Consensus 82 ~~a~~ 86 (91)
T 2dgw_A 82 FREKS 86 (91)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 44443
No 179
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.48 E-value=5.8e-14 Score=126.90 Aligned_cols=82 Identities=28% Similarity=0.564 Sum_probs=76.6
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
....+|||+|||..+|+++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999999999987 8999999999999999999999999999999999999887
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 180
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=4.7e-14 Score=127.93 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=76.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999865
No 181
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=2.6e-14 Score=118.38 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+. |++..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999998899999999999999999999998 9999999999998764
No 182
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.4e-14 Score=124.01 Aligned_cols=80 Identities=23% Similarity=0.499 Sum_probs=75.1
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCC-CCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~-g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..++|||+|||+.+|+++|+++|.+|| |..|.|+.+..+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 457899999999999999999999999 999999999887 899999999999999999999 89999999999999987
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 544
No 183
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=118.76 Aligned_cols=75 Identities=20% Similarity=0.403 Sum_probs=65.7
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+ ++||||+|.+.++|++||..|||..|.| ..+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 74 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKG----KRIN 74 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 345899999999999999999999999999999998 4499999999999999999999999987 4455
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 75 v~~a~~~ 81 (90)
T 2dnp_A 75 VELSTKG 81 (90)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 5555543
No 184
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-14 Score=130.77 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=66.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCE-EEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEI-TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++|||+|||+.+|+++|+++|.+||.| ..|.|+++. +++++|||||+|.+.++|++||.. |+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 345899999999999999999999999999 899999998 999999999999999999999987 9999987
No 185
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.48 E-value=8.6e-14 Score=123.39 Aligned_cols=82 Identities=23% Similarity=0.422 Sum_probs=75.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC---ccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING---KQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g---r~i~V 270 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346789999999999999999999999999999999987 68999999999999999999999999999988 99999
Q ss_pred cCCCCC
Q 004069 271 TPSQDS 276 (775)
Q Consensus 271 ~~a~~~ 276 (775)
.++...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 887543
No 186
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.7e-14 Score=126.87 Aligned_cols=83 Identities=25% Similarity=0.387 Sum_probs=77.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceE--------EEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--------EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~--------~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
...++|||+|||+.+|+++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4567899999999999999999999999999 69999998899999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 004069 266 KQCGVTPSQDS 276 (775)
Q Consensus 266 r~i~V~~a~~~ 276 (775)
+.|.|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999988654
No 187
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.48 E-value=4.9e-14 Score=134.24 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=75.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccC--ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
..++|||+|||+.+|+++|+++|.+|| .|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004069 273 SQ 274 (775)
Q Consensus 273 a~ 274 (775)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 188
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.2e-14 Score=122.22 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=70.7
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcC--CcccCccccc
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGV 270 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~--~~~~gr~i~V 270 (775)
+....+|||+|||+.+|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|..|+..|++ ..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456788999999999999999999999999999999864 79999999999999999998864 7899999999
Q ss_pred cCCCCC
Q 004069 271 TPSQDS 276 (775)
Q Consensus 271 ~~a~~~ 276 (775)
.++...
T Consensus 87 ~~A~~~ 92 (105)
T 1sjq_A 87 QFSNHK 92 (105)
T ss_dssp CCCSSS
T ss_pred EEcCCC
Confidence 998654
No 189
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.6e-14 Score=126.57 Aligned_cols=81 Identities=27% Similarity=0.488 Sum_probs=76.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|++ .|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4567899999999999999999999999999999999998999999999999999999999999998 899999999987
Q ss_pred CC
Q 004069 274 QD 275 (775)
Q Consensus 274 ~~ 275 (775)
..
T Consensus 94 ~~ 95 (116)
T 2cqd_A 94 YL 95 (116)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 190
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=2.2e-13 Score=127.42 Aligned_cols=74 Identities=23% Similarity=0.468 Sum_probs=70.1
Q ss_pred ccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 369 IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 369 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.....++|||+|||..+|+++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33466899999999999999999999999999999999999999999999999999999999999999999986
No 191
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=123.46 Aligned_cols=72 Identities=18% Similarity=0.341 Sum_probs=66.7
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCC-EEEEEEe-cCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELA-RNMPSAKRKDFGFVTFDTHDAAVTCAKSIN--NAELGEG 443 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~-~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~ 443 (775)
..++|||+|||..+|+++|+++|.+||. |..|.|+ .+..+++++|||||+|.+.++|++||..|| +..|.|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence 3489999999999999999999999998 9999999 888889999999999999999999999996 5888873
No 192
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=5.4e-14 Score=129.14 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=76.8
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred C
Q 004069 274 Q 274 (775)
Q Consensus 274 ~ 274 (775)
.
T Consensus 100 ~ 100 (126)
T 3ex7_B 100 F 100 (126)
T ss_dssp E
T ss_pred c
Confidence 4
No 193
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.48 E-value=1.2e-13 Score=119.22 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=75.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999999999999999999999999999999973 6889999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 194
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=5.7e-14 Score=125.35 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=61.5
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccC-CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.++|||+|||+.+|+++|+++|++|| .|..|.|+.. +++|||||+|.+.++|++||..|||..|.|
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 48999999999999999999999999 8999998643 479999999999999999999999999987
No 195
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.48 E-value=6.2e-14 Score=125.47 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=77.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CC
Q 004069 274 QD 275 (775)
Q Consensus 274 ~~ 275 (775)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 196
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=122.01 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=66.2
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEE-EEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. |+..|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 34589999999999999999999999999997 888888 7899999999999999999999997 999998754
No 197
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.47 E-value=6.9e-14 Score=124.47 Aligned_cols=79 Identities=16% Similarity=0.318 Sum_probs=74.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456789999999999999999999999999999999998 8999999999999999999999999999999999999865
No 198
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.47 E-value=1.3e-13 Score=153.33 Aligned_cols=142 Identities=18% Similarity=0.308 Sum_probs=96.8
Q ss_pred HHHhhccccCceEEEEEeec----C-CCCCCcceE--EEEEccHHHHHHHHHhhcCCcccC---------------cccc
Q 004069 212 DLRKVFSQVGEVTEVRLMMN----P-QTKKNKGFA--FLRFATVEQARQAVTELKNPVING---------------KQCG 269 (775)
Q Consensus 212 ~L~~~f~~~G~v~~v~i~~d----~-~~g~~~g~a--fV~F~s~e~A~~Al~~l~~~~~~g---------------r~i~ 269 (775)
.|.++|.++++|..|..+.. . .+....|++ |+.|.....+..++..++...+.. ..+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37889999999988743321 1 122223333 677766544433332221111100 0111
Q ss_pred c--------cCCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHH
Q 004069 270 V--------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341 (775)
Q Consensus 270 V--------~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l 341 (775)
+ ......++|||+|||+.+|+++|.++|.+|| .|+.|.|+.+ ..+++++|||||+|.+.++|.+||..|
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G--~I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYG--PIKRIHMVYS-KRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEeecc-CCCCCccceEEEeeccHHHHHHHHHHc
Confidence 1 1123457999999999999999999999999 8999999877 468899999999999999999999999
Q ss_pred cCCceeccCCCCceeccc
Q 004069 342 QKRDVLFGVDRPAKVSFA 359 (775)
Q Consensus 342 ~~~~i~~~~~~~l~v~~a 359 (775)
|+..| .++.|.|.|+
T Consensus 165 ng~~i---~gr~i~V~~a 179 (437)
T 3pgw_S 165 DGKKI---DGRRVLVDVE 179 (437)
T ss_pred CCCEE---CCEEEEEEEe
Confidence 98876 3666666554
No 199
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9e-14 Score=125.12 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=60.6
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g 442 (775)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|++||..|++ ..|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34589999999999999999999999999999999976 89999999999999999999884 57876
No 200
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.47 E-value=7.6e-14 Score=123.78 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=65.0
Q ss_pred cccceecCCCCCCC------CHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 372 QVKTVFVDGLPASW------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 372 ~~~~l~V~nLp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
..++|||+|||..+ |+++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|++||..|||..|.|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34899999999999 789999999999999999998 36899999999999999999999999999999873
No 201
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=117.89 Aligned_cols=75 Identities=19% Similarity=0.456 Sum_probs=66.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+ ++||||+|.+.++|++|+..||+..|.| ..+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 75 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQG----KRMH 75 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCC----cEEE
Confidence 345899999999999999999999999999999998 4499999999999999999999999986 4555
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 76 V~~a~~~ 82 (92)
T 2dgt_A 76 VQLSTSR 82 (92)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 5665553
No 202
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6.3e-14 Score=124.27 Aligned_cols=82 Identities=27% Similarity=0.513 Sum_probs=77.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 4567899999999999999999999999999999999999999999999999999999999998 999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 93 ~~~ 95 (105)
T 2dh8_A 93 TPR 95 (105)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 203
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.5e-14 Score=128.13 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=62.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCE----EEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEI----TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
.+.++|||+|||..+|+++|+++|.+||.| ..+.+. +++++|||||+|.+.++|++||..|||..|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 356899999999999999999999999998 455544 788999999999999999999999999999873
No 204
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2e-13 Score=121.98 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=68.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||..|||..|.| ..+.+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 93 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKC 93 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEE
Confidence 4489999999999999999999999999999999976 7999999999999999999999999987 45555
Q ss_pred eccCCC
Q 004069 452 RLSRPL 457 (775)
Q Consensus 452 ~~~~~~ 457 (775)
.++++.
T Consensus 94 ~~a~~~ 99 (109)
T 1x4g_A 94 YWGKES 99 (109)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 665553
No 205
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=4.6e-14 Score=120.68 Aligned_cols=81 Identities=22% Similarity=0.474 Sum_probs=75.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCC-CcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK-NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~-~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999877665 8999999999999999999999999999999999876
Q ss_pred CC
Q 004069 274 QD 275 (775)
Q Consensus 274 ~~ 275 (775)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 206
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.46 E-value=3.6e-14 Score=123.32 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=75.1
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...+|||+|||+.+|+++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35789999999999999999999999999999999988899999999999999999999999999999999999998764
No 207
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=8.1e-14 Score=122.44 Aligned_cols=81 Identities=21% Similarity=0.490 Sum_probs=73.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecC-CCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~-~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
...++|||+|||+.+++++|+++|.+|| |..|.|+.+. .+++++|||||+|.+.++|.+|| .|++..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4567899999999999999999999999 9999999988 58999999999999999999999 8999999999999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7554
No 208
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=9e-14 Score=132.74 Aligned_cols=83 Identities=16% Similarity=0.341 Sum_probs=78.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|+.|.|+.+..++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 209
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=121.07 Aligned_cols=81 Identities=25% Similarity=0.479 Sum_probs=74.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+.. .+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4567899999999999999999999999999999998754 38999999999999999999999999999999999987
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 544
No 210
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.4e-14 Score=124.38 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=69.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++|+..|||..|.| ..+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 100 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 100 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 455899999999999999999999999999999999884 4589999999999999999999999999987 3444
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++++
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 444443
No 211
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=1.3e-13 Score=126.24 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=68.4
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||..|||..|.|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 456899999999999999999999999999999999998 899999999999999999999999999999873
No 212
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.2e-14 Score=118.40 Aligned_cols=76 Identities=28% Similarity=0.538 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999998899999999999999999999999999 9999999998765
No 213
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.8e-14 Score=124.41 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=77.4
Q ss_pred CccEEEEcCCCCCCcHHHHH---hhccccCceEEEEEeecCCCC---CCcceEEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLR---KVFSQVGEVTEVRLMMNPQTK---KNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~---~~f~~~G~v~~v~i~~d~~~g---~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
...+|||+|||+.+++++|+ ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|++||..||+..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 45679999999999999999 999999999999999887643 566999999999999999999999999999999
Q ss_pred cccCCCCCCccc
Q 004069 269 GVTPSQDSDTLF 280 (775)
Q Consensus 269 ~V~~a~~~~~l~ 280 (775)
.|.++....+.+
T Consensus 94 ~V~~a~~k~~~~ 105 (111)
T 2cpi_A 94 KASLGTTKYCSY 105 (111)
T ss_dssp EEESCCCCSCSS
T ss_pred EEEecccccccc
Confidence 999997765443
No 214
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=2.7e-14 Score=122.83 Aligned_cols=73 Identities=21% Similarity=0.440 Sum_probs=68.5
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceE
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (775)
++|||+|||..+++++|+++|++||.|..|.|+++..+++++|||||+|.+.+ |.+|+..|||..|.|..+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999755333
No 215
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.6e-14 Score=124.31 Aligned_cols=81 Identities=28% Similarity=0.496 Sum_probs=76.6
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 46799999999999999999999999999999999988999999999999999999999999999999999999998754
Q ss_pred C
Q 004069 276 S 276 (775)
Q Consensus 276 ~ 276 (775)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 4
No 216
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=9.6e-14 Score=116.86 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCC------cHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCc-ccc
Q 004069 197 FEVFVGGLDKDV------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-QCG 269 (775)
Q Consensus 197 ~~l~V~nLp~~~------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr-~i~ 269 (775)
++|||+|||..+ |+++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|.+|+..||+..|.|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 579999999999 789999999999999999987 46789999999999999999999999999999999 887
Q ss_pred cc
Q 004069 270 VT 271 (775)
Q Consensus 270 V~ 271 (775)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 217
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.5e-14 Score=123.54 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=75.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 45789999999999999999999999999988888888899999999999999999999999999999999999998875
Q ss_pred C
Q 004069 275 D 275 (775)
Q Consensus 275 ~ 275 (775)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 218
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=2.3e-13 Score=121.78 Aligned_cols=92 Identities=14% Similarity=0.246 Sum_probs=72.4
Q ss_pred CCCceecccCCCCCCCccccccccceecCCCCCC-CCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHH
Q 004069 351 DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (775)
Q Consensus 351 ~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (775)
+.++.+..+....... .....++|||+|||.. +|+++|+++|.+||.|..|.| ++|||||+|.+.++|+
T Consensus 7 g~~~~~~~s~~~~~~~--~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 7 GMSLKLQASNVTNKND--PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp SCCCCCCCCCSCCSCC--CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CcccccccCCCCCCCC--CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 4555555554332221 2234589999999999 999999999999999999999 3789999999999999
Q ss_pred HHHHHhCCCccCCCcceEEEEeeccCC
Q 004069 430 TCAKSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 430 ~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
+||..||+..|.| ..+.+.++++
T Consensus 77 ~A~~~l~g~~~~g----~~l~V~~a~~ 99 (110)
T 1wf1_A 77 AAVLGENGRVLAG----QTLDINMAGE 99 (110)
T ss_dssp HHHHHHTTCEETT----EECCEEESCC
T ss_pred HHHHHcCCCEECC----eEEEEEECCC
Confidence 9999999999987 4445555543
No 219
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=120.33 Aligned_cols=66 Identities=27% Similarity=0.553 Sum_probs=62.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.+.++|||+|||..+|+++|+++|.+||.|..|.|+++ +|||||+|.+.++|++|+..|||..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45589999999999999999999999999999999865 7999999999999999999999999987
No 220
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.5e-14 Score=123.44 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=71.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||. +.|+|+.++ +++++|||||+|.+.++|++||. +|+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45678999999999999999999999995 599999997 89999999999999999999995 7999999999998765
Q ss_pred C
Q 004069 274 Q 274 (775)
Q Consensus 274 ~ 274 (775)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 221
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=120.72 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=62.0
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
++|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+..|||..|.|..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 47999999999999999999999999999999977 6899999999999999999999999998743
No 222
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.8e-13 Score=119.22 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=63.8
Q ss_pred ccccceecCCCCC-CCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 371 AQVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 371 ~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
.+.++|||+|||. .+|+++|+++|++||.|..|.|. +|||||+|.+.++|++||..|||..|.|..+.+.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3458999999998 99999999999999999999995 78999999999999999999999999986544444
Q ss_pred E
Q 004069 450 R 450 (775)
Q Consensus 450 ~ 450 (775)
.
T Consensus 80 a 80 (96)
T 2kvi_A 80 S 80 (96)
T ss_dssp E
T ss_pred c
Confidence 3
No 223
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.3e-14 Score=126.77 Aligned_cols=77 Identities=27% Similarity=0.454 Sum_probs=73.8
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 467999999999999999999999999999999999999999999999999999999999 89999999999999875
No 224
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.45 E-value=6e-14 Score=116.15 Aligned_cols=72 Identities=26% Similarity=0.518 Sum_probs=66.4
Q ss_pred ceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceE
Q 004069 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (775)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (775)
+|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|+. +++..|.|..+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999998 5888898755433
No 225
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=8.6e-14 Score=122.00 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=71.5
Q ss_pred CccEEEEcCCCC-CCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcC--CcccCcccccc
Q 004069 195 KEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVT 271 (775)
Q Consensus 195 ~~~~l~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~--~~~~gr~i~V~ 271 (775)
...+|||+|||+ .+|+++|+++|.+||.|+.|.|+++ ++||||+|.+.++|..||..|++ ..|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 467899999999 9999999999999999999999854 58999999999999999999885 45999999999
Q ss_pred CCCCCCccc
Q 004069 272 PSQDSDTLF 280 (775)
Q Consensus 272 ~a~~~~~l~ 280 (775)
++.....|.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x4d_A 88 LSQKYKRIK 96 (102)
T ss_dssp EECCCTTSS
T ss_pred ECCCCCCCC
Confidence 987665554
No 226
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=123.10 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=63.9
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...+|||+|||+.+|+++|+++|++| .|..|.|+.++. |+++|||||+|.+.++|++|| .||+..|.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 34799999999999999999999999 899999999975 999999999999999999999 699999987
No 227
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=123.49 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45789999999999999999999999999999999987 58899999999999999999999999999999999998874
Q ss_pred C
Q 004069 275 D 275 (775)
Q Consensus 275 ~ 275 (775)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 228
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=5.9e-14 Score=129.86 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=76.0
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEE--EEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCC----cccCccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP----VINGKQC 268 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~--v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~----~~~gr~i 268 (775)
...+|||+|||+.+|+++|+++|.+||.|.. |+|++++.+++++|||||+|.+. +|.+||..||+. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 3567999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred cccCCCCC
Q 004069 269 GVTPSQDS 276 (775)
Q Consensus 269 ~V~~a~~~ 276 (775)
.|.++...
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99988654
No 229
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=120.59 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=73.3
Q ss_pred CccEEEEcCCCCCCcHHHHH----hhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
..++|||+|||+.+++++|+ ++|.+||.|..|.|+.+..+ ++||||+|.+.++|.+||..||+..|.|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45689999999999999999 99999999999999988665 889999999999999999999999999999999
Q ss_pred cCCCCC
Q 004069 271 TPSQDS 276 (775)
Q Consensus 271 ~~a~~~ 276 (775)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 988654
No 230
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=121.42 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=73.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEE-EEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE-VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~-v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
...++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34678999999999999999999999999987 888887 7899999999999999999999997 99999999999977
Q ss_pred CCC
Q 004069 273 SQD 275 (775)
Q Consensus 273 a~~ 275 (775)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 644
No 231
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=120.92 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=74.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3467899999999999999999999999999999998754 36899999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 554
No 232
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=1.1e-13 Score=126.79 Aligned_cols=82 Identities=24% Similarity=0.494 Sum_probs=76.8
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34578999999999999999999999999999999999889999999999999999999999 79999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=121.46 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=73.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+ +.+++||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34678999999999999999999999999999999654 568999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=1.5e-13 Score=122.76 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=74.0
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
....++|||+|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEE
Confidence 3456789999999999999999999999999999999999899999999999999999999999764 899999999988
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7543
No 235
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=5.4e-14 Score=120.94 Aligned_cols=79 Identities=29% Similarity=0.532 Sum_probs=73.6
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~ 276 (775)
++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.+ |.+|+..||+..|.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999889999999999999999 99999999999999999999987554
No 236
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=128.85 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=77.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34578999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 544
No 237
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=2e-13 Score=125.03 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=77.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 446789999999999999999999999999999999987 8999999999999999999999999999999999999988
Q ss_pred CCCC
Q 004069 274 QDSD 277 (775)
Q Consensus 274 ~~~~ 277 (775)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 238
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.4e-14 Score=128.30 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=68.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (775)
...++|||+|||+.+|+++|+++|.+||.|..+.++.+..+|+++|||||+|.+.++|++||. ||+..|.|..+.+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345899999999999999999999999999987777777799999999999999999999999 9999999854333
No 239
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=2.1e-14 Score=126.47 Aligned_cols=79 Identities=8% Similarity=0.199 Sum_probs=68.2
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|.+||.|.. .++.+..+++++|||||+|.+.++|++||+ |||..|.|. .+.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~----~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN----EIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB----CCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc----EEEE
Confidence 4589999999999999999999999999887 667777788999999999999999999998 999999873 3444
Q ss_pred eccCC
Q 004069 452 RLSRP 456 (775)
Q Consensus 452 ~~~~~ 456 (775)
.++++
T Consensus 90 ~~a~~ 94 (101)
T 1fj7_A 90 EKPKG 94 (101)
T ss_dssp ECCSC
T ss_pred EEcCC
Confidence 44444
No 240
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.8e-13 Score=120.00 Aligned_cols=84 Identities=35% Similarity=0.512 Sum_probs=77.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 34678999999999999999999999999999999743 789999999999999999999999999999999999
Q ss_pred CCCCcccccC
Q 004069 274 QDSDTLFLGN 283 (775)
Q Consensus 274 ~~~~~l~V~n 283 (775)
.....+.+++
T Consensus 87 ~~~~~~~~g~ 96 (99)
T 2cpj_A 87 CHSASLTSGP 96 (99)
T ss_dssp SCCSCCCCCC
T ss_pred CCCCCCCCCC
Confidence 8888877765
No 241
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=114.62 Aligned_cols=66 Identities=26% Similarity=0.459 Sum_probs=62.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI-NNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g 442 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+++ +|||||+|.+.++|++|+..| |+..|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 34589999999999999999999999999999999975 899999999999999999999 9999987
No 242
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=124.21 Aligned_cols=80 Identities=24% Similarity=0.527 Sum_probs=75.6
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 46799999999999999999999999999999999999999999999999999999999997 99999999999998865
Q ss_pred C
Q 004069 276 S 276 (775)
Q Consensus 276 ~ 276 (775)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 243
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=1e-13 Score=125.72 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=65.4
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCC---EEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..++|||+|||+++|+++|+++|.+||. |..|.|+++.. |+++|||||+|.+.++|++||. ||+..|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 4588999999999999999999999999 89999999976 9999999999999999999999 99999987
No 244
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=5.6e-13 Score=120.94 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=67.4
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF-GFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
.....|||+||++.+|+++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.|+. +.+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l 94 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTL 94 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEE
Confidence 34466789999999999999999999999999999753 386 999999999999999999999998744 455
Q ss_pred EeeccCCC
Q 004069 450 RARLSRPL 457 (775)
Q Consensus 450 ~~~~~~~~ 457 (775)
++.++++.
T Consensus 95 ~V~~Ak~~ 102 (124)
T 2e5i_A 95 KIEYARPT 102 (124)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 66666654
No 245
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=119.52 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=67.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..| ..++.++|||||+|.+.++|++||..|||..|.| ..+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 84 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVS 84 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 355899999999999999999999999988666 3468899999999999999999999999999987 4456
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 6666554
No 246
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2e-13 Score=121.94 Aligned_cols=83 Identities=24% Similarity=0.373 Sum_probs=76.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCc-eEEEEEe-ecCCCCCCcceEEEEEccHHHHHHHHHhhc--CCcccCcccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLM-MNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCG 269 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~-~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~ 269 (775)
...++|||+|||+.+|+++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|.+||..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred ccCCCCC
Q 004069 270 VTPSQDS 276 (775)
Q Consensus 270 V~~a~~~ 276 (775)
|.++...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9988654
No 247
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3e-13 Score=121.15 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=63.9
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.. +|||||+|.+.++|++||..|||..|.|..+.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4589999999999999999999999999999999853 8899999999999999999999999997554333
No 248
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=3.3e-13 Score=123.53 Aligned_cols=70 Identities=13% Similarity=0.283 Sum_probs=63.2
Q ss_pred cccceecCCCCCCCCHHHHH----HHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
+.++|||+|||+.+++++|+ ++|++||.|..|.|.. +++++|||||+|.+.++|..||..|||..|.|..
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 45899999999999999876 6999999999998864 5788999999999999999999999999999743
No 249
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=3.8e-13 Score=122.58 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=70.1
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF-GFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
....|||+||++.+|+++|+++|++||.|..|.|+.. .+|| |||+|.+.++|++|++.|||..|.++ .+.++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~Lr 99 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLR 99 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEE
Confidence 3467889999999999999999999999999998864 3688 99999999999999999999999874 36777
Q ss_pred eeccCCCC
Q 004069 451 ARLSRPLQ 458 (775)
Q Consensus 451 ~~~~~~~~ 458 (775)
+.++++..
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 78887653
No 250
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=117.93 Aligned_cols=80 Identities=16% Similarity=0.323 Sum_probs=74.5
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+| .|..|.|+.+ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 456789999999999999999999999 9999999998 789999999999999999999999 9999999999999887
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 543
No 251
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.3e-14 Score=125.52 Aligned_cols=78 Identities=13% Similarity=0.218 Sum_probs=73.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCce-EEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEV-TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v-~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
...++|||+|||+.+|+++|+++|.+||.| ..|+|+.+. +++++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 346789999999999999999999999999 899999987 899999999999999999999997 99999999999987
Q ss_pred C
Q 004069 273 S 273 (775)
Q Consensus 273 a 273 (775)
+
T Consensus 91 a 91 (114)
T 2cpy_A 91 V 91 (114)
T ss_dssp E
T ss_pred C
Confidence 6
No 252
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.1e-13 Score=120.30 Aligned_cols=63 Identities=17% Similarity=0.383 Sum_probs=58.5
Q ss_pred cccceec--CCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 004069 372 QVKTVFV--DGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (775)
Q Consensus 372 ~~~~l~V--~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (775)
++++||| +||++.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+..|||+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578999 779999999999999999999999998753 79999999999999999999999987
No 253
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3e-13 Score=119.40 Aligned_cols=81 Identities=28% Similarity=0.504 Sum_probs=74.6
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEec
Confidence 4467799999999999999999999999999999999998999999999999999999999994 67899999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
No 254
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=8.6e-14 Score=128.96 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=66.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCC---EEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
..++|||+|||+++|+++|+++|++||. |..|.|++++. |+++|||||+|.+.++|++||. ||+..|.+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 4589999999999999999999999999 89999999987 9999999999999999999999 999999873
No 255
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.42 E-value=1e-13 Score=125.77 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=72.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCc---eEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
...++|||+|||+.+|+++|+++|.+||. |..|+|+.+.. ++++|||||+|.+.++|++||. ||+..|.|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35678999999999999999999999999 89999999877 9999999999999999999999 9999999999998
Q ss_pred cCC
Q 004069 271 TPS 273 (775)
Q Consensus 271 ~~a 273 (775)
.++
T Consensus 93 ~~a 95 (118)
T 2db1_A 93 FKS 95 (118)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 256
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2e-13 Score=118.08 Aligned_cols=75 Identities=15% Similarity=0.307 Sum_probs=63.5
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCC-EEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccCCCcceEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN-AELGEGDNKAKV 449 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~~~~~v 449 (775)
..++|||+|||..+|+++|+++|.+||. |..+.|. ++|||||+|.+.++|++||..||| ..|.| ..+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l 75 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIM 75 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEE
Confidence 4589999999999999999999999999 6555553 389999999999999999999999 89986 445
Q ss_pred EeeccCCC
Q 004069 450 RARLSRPL 457 (775)
Q Consensus 450 ~~~~~~~~ 457 (775)
.+.++++.
T Consensus 76 ~v~~a~~~ 83 (93)
T 2cqh_A 76 EVDYSVSK 83 (93)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 55555543
No 257
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=122.14 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=69.9
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..+|||+|||+.+|+++|+++|.+| .|..|.|+.+.. ++++|||||+|.+.++|.+|| .||+..|.|+.|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3579999999999999999999999 899999999875 999999999999999999999 59999999999998765
No 258
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=121.35 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=73.6
Q ss_pred CccEEEEcCCCCCC------cHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCc-c
Q 004069 195 KEFEVFVGGLDKDV------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-Q 267 (775)
Q Consensus 195 ~~~~l~V~nLp~~~------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr-~ 267 (775)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|.+||..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35689999999999 889999999999999999988 46789999999999999999999999999999998 9
Q ss_pred ccccCCCCC
Q 004069 268 CGVTPSQDS 276 (775)
Q Consensus 268 i~V~~a~~~ 276 (775)
|.|.++.+.
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999988654
No 259
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.3e-13 Score=119.74 Aligned_cols=74 Identities=23% Similarity=0.433 Sum_probs=66.4
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEee
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (775)
.++|||+|||..+|+++|+++|.+||.|..|.|++ ++|||||+|.+.++|.+||..|||..|.| ..+.+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 96 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTG 96 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 48999999999999999999999999999999984 48999999999999999999999999987 556666
Q ss_pred ccCC
Q 004069 453 LSRP 456 (775)
Q Consensus 453 ~~~~ 456 (775)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 6554
No 260
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.42 E-value=1.2e-13 Score=128.40 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=77.3
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45679999999999999999999999999999999998899999999999999999999999999999999999999885
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 126 ~~ 127 (135)
T 2lea_A 126 YG 127 (135)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=127.17 Aligned_cols=80 Identities=26% Similarity=0.533 Sum_probs=75.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
....+|||+|||..+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999998764
No 262
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.41 E-value=4.1e-13 Score=119.63 Aligned_cols=75 Identities=16% Similarity=0.405 Sum_probs=66.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+..|||..|.| ..+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 96 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLE 96 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 456899999999999999999999999999999998 6899999999999999999999999986 4555
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 6666543
No 263
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.41 E-value=8.8e-14 Score=115.11 Aligned_cols=75 Identities=29% Similarity=0.609 Sum_probs=70.6
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
+|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999988999999999999999999999994 889999999988753
No 264
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.6e-13 Score=120.03 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=70.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC-----ccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-----KQC 268 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g-----r~i 268 (775)
...++|||+|||+.+|+++|+++|.+||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35678999999999999999999999999999999865 899999999999999999999999999 999
Q ss_pred cccCCCCC
Q 004069 269 GVTPSQDS 276 (775)
Q Consensus 269 ~V~~a~~~ 276 (775)
.|.++...
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99888554
No 265
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=122.61 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=66.4
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCC---EEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|||+.+|+++|+++|..||. |..|.|+++.. |+++|||||+|.+.++|++||. ||+..|.|..
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 4589999999999999999999999998 89999999987 9999999999999999999999 9999998754
No 266
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.2e-14 Score=128.39 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=72.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345789999999999999999999999999987777777789999999999999999999999 9999999999999876
No 267
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.41 E-value=1.1e-13 Score=128.21 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=73.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCc---eEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
...++|||+|||+++|+++|+++|.+||. |..|.|+.+.. ++++|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34678999999999999999999999999 89999999977 9999999999999999999999 9999999999998
Q ss_pred cCC
Q 004069 271 TPS 273 (775)
Q Consensus 271 ~~a 273 (775)
.++
T Consensus 120 ~~a 122 (136)
T 2hgl_A 120 FKS 122 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 268
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.6e-13 Score=122.10 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=60.6
Q ss_pred ccccceecCCCCCC-CCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCCc
Q 004069 371 AQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~ 444 (775)
.+.++|||+|||++ +|+++|+++|.+||.|..|.|++. +|||||+|.+.++|++||..||+ ..|.|..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 35689999999998 999999999999999999999854 89999999999999999998865 4577644
No 269
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=6.3e-13 Score=115.96 Aligned_cols=73 Identities=19% Similarity=0.374 Sum_probs=64.4
Q ss_pred ccccceecCCCCC-CCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 371 AQVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 371 ~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
...++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|.| ..+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 87 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKL 87 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT----EEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 4568999999998 99999999999999999999994 7899999999999999999999999986 344
Q ss_pred EeeccC
Q 004069 450 RARLSR 455 (775)
Q Consensus 450 ~~~~~~ 455 (775)
.+.+++
T Consensus 88 ~V~~a~ 93 (97)
T 2xnq_A 88 ILEVSS 93 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 444444
No 270
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.8e-13 Score=120.43 Aligned_cols=75 Identities=13% Similarity=0.353 Sum_probs=68.5
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.++.+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 345789999999999999999999999999999999997 899999999999999999999999999999655433
No 271
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-13 Score=122.49 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=73.0
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCc---eEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~---v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
...++|||+|||+.+|+++|+++|.+||. |..|.|+.+.. ++++|||||+|.+.++|.+||. ||+..|.|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 35678999999999999999999999998 89999999877 9999999999999999999999 9999999999998
Q ss_pred cCC
Q 004069 271 TPS 273 (775)
Q Consensus 271 ~~a 273 (775)
.++
T Consensus 87 ~~a 89 (107)
T 2lmi_A 87 YEI 89 (107)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 272
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.41 E-value=5.9e-13 Score=120.03 Aligned_cols=70 Identities=11% Similarity=0.329 Sum_probs=64.6
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4589999999999999999999999999999999875 456999999999999999999999999998744
No 273
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.9e-13 Score=121.66 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=73.6
Q ss_pred cCccEEEEcCCCCC-CcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc--CCcccCccccc
Q 004069 194 RKEFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~V 270 (775)
...++|||+|||++ +|+++|+++|.+||.|+.|.|++ ++|||||+|.+.++|..||..|+ +..|.|+.|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 35678999999998 99999999999999999999973 47999999999999999999886 45699999999
Q ss_pred cCCCCCCccccc
Q 004069 271 TPSQDSDTLFLG 282 (775)
Q Consensus 271 ~~a~~~~~l~V~ 282 (775)
.++.....+.++
T Consensus 97 ~~a~~~~~~~~~ 108 (112)
T 1x4f_A 97 DLSEKYKKLVSG 108 (112)
T ss_dssp EEECSCSSSSCC
T ss_pred EECccccccccC
Confidence 999877766654
No 274
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=117.62 Aligned_cols=68 Identities=18% Similarity=0.352 Sum_probs=61.2
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|||..+|+++|+++|.+||.|. +.|+. ++++|||||+|.+.++|++||..|||..|.|..
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 458999999999999999999999999997 66664 367899999999999999999999999998743
No 275
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.41 E-value=2.6e-13 Score=118.30 Aligned_cols=78 Identities=19% Similarity=0.413 Sum_probs=68.5
Q ss_pred cccceecCCCCCCCCHHHHH----HHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceE
Q 004069 372 QVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (775)
+.++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.| .
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 79 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----K 79 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----c
Confidence 45899999999999999999 9999999999999974 46789999999999999999999999999986 4
Q ss_pred EEEeeccCC
Q 004069 448 KVRARLSRP 456 (775)
Q Consensus 448 ~v~~~~~~~ 456 (775)
.+.+.++++
T Consensus 80 ~l~v~~a~~ 88 (97)
T 1nu4_A 80 PMRIQYAKT 88 (97)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEccC
Confidence 455555554
No 276
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.41 E-value=3.9e-13 Score=130.83 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=71.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|.|..+.+.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999999998 899999999999999999999999999999985543333
No 277
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9e-13 Score=114.25 Aligned_cols=65 Identities=20% Similarity=0.406 Sum_probs=58.6
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..++|||+|||..+|+++|+++|.+||.|..| +.+..+++ ||||+|.+.++|++||. |||..|.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 34799999999999999999999999999987 45555554 99999999999999999 99999987
No 278
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=116.71 Aligned_cols=77 Identities=27% Similarity=0.273 Sum_probs=69.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCc--ccCcccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV--INGKQCGVT 271 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~--~~gr~i~V~ 271 (775)
....+|||+|||+.+|+++|+++|.+||.|+.|.|++ .+|||||+|.+.++|.+|+..|++.. |.|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3567899999999999999999999999999999974 47899999999999999999998765 789999999
Q ss_pred CCCCC
Q 004069 272 PSQDS 276 (775)
Q Consensus 272 ~a~~~ 276 (775)
++...
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 87643
No 279
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.1e-13 Score=117.94 Aligned_cols=82 Identities=27% Similarity=0.539 Sum_probs=74.8
Q ss_pred HHhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 190 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
.......++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|.+||..|++..|.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 19 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp HHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345566789999999999999999999999999999999865 78999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004069 270 VTPSQDSD 277 (775)
Q Consensus 270 V~~a~~~~ 277 (775)
|.++....
T Consensus 93 v~~a~~~~ 100 (109)
T 1x4g_A 93 CYWGKESP 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99986654
No 280
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.9e-12 Score=112.84 Aligned_cols=75 Identities=16% Similarity=0.385 Sum_probs=65.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|||+|| .+|+++|+++|.+||.|..|.|. +++|||||+|.+.++|++||..|||..|.| ..+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 80 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLK 80 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEE
Confidence 35589999996 89999999999999999999995 348999999999999999999999999986 4555
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
+.++++.
T Consensus 81 v~~a~~~ 87 (97)
T 1x5p_A 81 VNIARKQ 87 (97)
T ss_dssp EECCSSC
T ss_pred EEECCCC
Confidence 6666553
No 281
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=124.36 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=63.2
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCE----EEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEI----TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
..+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||.. |+..|.++
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 4899999999999999999999999976 68999988 4899999999999999999999985 99888764
No 282
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=8.8e-13 Score=113.30 Aligned_cols=75 Identities=23% Similarity=0.500 Sum_probs=69.8
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 346789999999999999999999999999999997 679999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 283
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=6.5e-13 Score=116.44 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=68.5
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc--CCcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~V~~ 272 (775)
...+|||+|||+.+|+++|+++|.+||.|+.|.|+.+ +|||||+|.+.++|.+|+..|+ +..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4578999999999999999999999999999998753 8999999999999999999874 6789999999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 88 a~~~ 91 (101)
T 2cq1_A 88 SNHK 91 (101)
T ss_dssp CSCS
T ss_pred cCcc
Confidence 8543
No 284
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=3.1e-13 Score=115.67 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=77.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+| .|..|.|. +++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 346789999999999999999999999 99999884 56899999999999999999999999999999999999
Q ss_pred CCCCcccccCc
Q 004069 274 QDSDTLFLGNI 284 (775)
Q Consensus 274 ~~~~~l~V~nL 284 (775)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 88888887764
No 285
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.39 E-value=1.8e-13 Score=127.24 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=72.0
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+++|+++|+++|.+|| |+.|.|+.++. ++++|||||+|.+.++|++|| .+|+..|.|+.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999 77999999876 999999999999999999999 68999999999999876
Q ss_pred CC
Q 004069 274 QD 275 (775)
Q Consensus 274 ~~ 275 (775)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 286
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.5e-13 Score=120.32 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=74.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999999875 358999999999999999999999999999999999887
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 287
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.1e-13 Score=121.72 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=63.5
Q ss_pred cceecCCC----CCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCc
Q 004069 374 KTVFVDGL----PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT----HDA----AVTCAK--SINNAE 439 (775)
Q Consensus 374 ~~l~V~nL----p~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~----~~~----A~~A~~--~l~g~~ 439 (775)
+.|||+|| |+.+++.+|+++|+.||.|..|.++.|+.||+++|||||+|.+ +++ |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 889988 789999
Q ss_pred cCC
Q 004069 440 LGE 442 (775)
Q Consensus 440 ~~g 442 (775)
|.|
T Consensus 83 I~G 85 (136)
T 2j8a_A 83 IMG 85 (136)
T ss_dssp ETT
T ss_pred ecC
Confidence 998
No 288
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.38 E-value=3.8e-13 Score=130.91 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=76.7
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346789999999999999999999999999999999987 8999999999999999999999999999999999999987
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 554
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=8.7e-13 Score=115.97 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=71.1
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
....++|||+|||..+++++|+++|.+||.|..|.|+ .++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999997 3589999999999999999999999999999999998
Q ss_pred CCC
Q 004069 273 SQD 275 (775)
Q Consensus 273 a~~ 275 (775)
+..
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 290
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.2e-13 Score=120.13 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=69.7
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc--CCcccCcccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVT 271 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~V~ 271 (775)
....+|||+|||+.+|+++|+++|++||.|+.|.|+.+ +|||||+|.+.++|.+|+..|+ +..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34678999999999999999999999999999999864 7999999999999999999887 468999999999
Q ss_pred CCCCC
Q 004069 272 PSQDS 276 (775)
Q Consensus 272 ~a~~~ 276 (775)
++...
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 88544
No 291
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=1.1e-12 Score=124.04 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=68.3
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
...+|||+||++.+|+++|+++|++||.|..|.|+.. .++|||||+|.+.++|++|++.|||..|.++. +.+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g--~~L~V 118 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRI 118 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSC--SCEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCC--cEEEE
Confidence 3477999999999999999999999999999999754 25789999999999999999999999997644 34555
Q ss_pred eccCCC
Q 004069 452 RLSRPL 457 (775)
Q Consensus 452 ~~~~~~ 457 (775)
.++++.
T Consensus 119 ~~Ak~~ 124 (164)
T 1sjr_A 119 DFSKLT 124 (164)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 666654
No 292
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=3.4e-13 Score=122.63 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=71.5
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCce----EEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV----TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v----~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
.....+|||+|||+.+|+++|+++|.+||.| ..|.|+.+ .+++++|||||+|.+.++|++||.. |+..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4567899999999999999999999999875 68999988 5799999999999999999999996 9999999998
Q ss_pred cccCC
Q 004069 269 GVTPS 273 (775)
Q Consensus 269 ~V~~a 273 (775)
.|..+
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 88654
No 293
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.38 E-value=3e-13 Score=120.67 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=71.6
Q ss_pred hccCccEEEEcCCCCCCcHHHHHhhccccC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 192 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
.....++|||+|||+.+|+++|+++|.+|| .|..|.|+. ..++|||||+|.+.++|++||..||+..|.|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345577899999999999999999999999 899998853 247899999999999999999999999999999999
Q ss_pred cCCCC
Q 004069 271 TPSQD 275 (775)
Q Consensus 271 ~~a~~ 275 (775)
.++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 88753
No 294
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5.9e-13 Score=117.04 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=71.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.| .|+.+ .++.++|||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 456789999999999999999999999987 45555 67889999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 295
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2e-13 Score=122.26 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=73.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
+..++|||+|||+.+|+++|+++|.+||.|..|.|+. +++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467899999999999999999999999999998863 5789999999999999999999999999999999988
Q ss_pred CCCCcccccCcc
Q 004069 274 QDSDTLFLGNIC 285 (775)
Q Consensus 274 ~~~~~l~V~nLp 285 (775)
.. .++..+.+
T Consensus 82 ~~--~~~~~~~~ 91 (111)
T 1whx_A 82 PI--GVFGAAPQ 91 (111)
T ss_dssp ET--TTTCCCCC
T ss_pred CC--CccCCCCC
Confidence 54 34444433
No 296
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=5e-13 Score=117.77 Aligned_cols=69 Identities=22% Similarity=0.467 Sum_probs=64.7
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|++||. |+..|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 45899999999999999999999999999999999998 99999999999999999999998 88888763
No 297
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=9.7e-13 Score=114.74 Aligned_cols=76 Identities=16% Similarity=0.398 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCccc--CccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN--GKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~--gr~i~V~~ 272 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++|+..||+..|. |+.|.|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4578999999999999999999999999999998753 789999999999999999999999999 99999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 298
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.37 E-value=6.5e-13 Score=121.09 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=63.4
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEE--EEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT--KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|||+.+|+++|+++|++| .|+ .|.|++++. |+++|||||+|.+.++|++||. +++..|.|+.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~ 112 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRY 112 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEE
Confidence 44889999999999999999999999 566 899999987 9999999999999999999998 5778888744
No 299
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=1e-12 Score=112.66 Aligned_cols=75 Identities=21% Similarity=0.369 Sum_probs=60.6
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+.++|||+|||+++|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|+ .|++..+.+.. +.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g--~~v~ 77 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKG--ISVH 77 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETT--EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCC--EEEE
Confidence 45589999999999999999999999999999999875 6999999999999988 36777766444 4444
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.++.+
T Consensus 78 v~~a~~ 83 (89)
T 3d2w_A 78 ISNAEP 83 (89)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 455544
No 300
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.1e-12 Score=115.73 Aligned_cols=76 Identities=28% Similarity=0.315 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcC--CcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~--~~~~gr~i~V~~ 272 (775)
...+|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|.+|+..|++ ..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4568999999999999999999999999999998753 79999999999999999998865 459999999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 8654
No 301
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8.9e-13 Score=116.10 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=72.8
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+|+ .|.++.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4567899999999999999999999873 6778888888999999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 90 ~~~ 92 (102)
T 2fc8_A 90 KPK 92 (102)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 302
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=9.7e-13 Score=120.40 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=72.0
Q ss_pred CccEEEEcCCCCCCcHHHHH----hhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
...+|||+|||+.+++++|+ ++|++||.|+.|.+.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46789999999999999876 6999999999988753 5788999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004069 271 TPSQDSD 277 (775)
Q Consensus 271 ~~a~~~~ 277 (775)
.++....
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9986553
No 303
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=7e-13 Score=120.85 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=69.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceE--EEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~--~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
....+|||+|||+.+|+++|+++|.+| .|+ .|.|+.++. |+++|||||+|.+.++|++||.. ++..|.|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 456789999999999999999999999 676 899999877 99999999999999999999995 7799999999987
Q ss_pred CC
Q 004069 272 PS 273 (775)
Q Consensus 272 ~a 273 (775)
++
T Consensus 117 ~a 118 (126)
T 2hgm_A 117 KS 118 (126)
T ss_dssp EE
T ss_pred EC
Confidence 65
No 304
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=8e-13 Score=119.21 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=63.8
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
...++|||+|||+.+|+++|+++|.+||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 34678999999999999999999999999999999754 899999999999999999999999999996554
No 305
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=110.97 Aligned_cols=74 Identities=28% Similarity=0.507 Sum_probs=68.5
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhh-cCCcccCccccccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l-~~~~~~gr~i~V~~ 272 (775)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|.+|+..| ++..|.|+.|.|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34567999999999999999999999999999999863 789999999999999999999 99999999999987
Q ss_pred C
Q 004069 273 S 273 (775)
Q Consensus 273 a 273 (775)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 5
No 306
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=6.2e-14 Score=126.78 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=77.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEE--------EEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~--------v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
...++|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34567999999999999999999999999998 8999988889999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 004069 266 KQCGVTPSQDS 276 (775)
Q Consensus 266 r~i~V~~a~~~ 276 (775)
+.|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999987544
No 307
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-13 Score=121.06 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=72.8
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+|+++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4568999999999999999999999999887 666666778999999999999999999999 99999999999999885
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 308
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6e-13 Score=119.85 Aligned_cols=63 Identities=22% Similarity=0.491 Sum_probs=59.4
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCC---CCcccEEEEEeCCHHHHHHHHHHh
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSI 435 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l 435 (775)
..++|||+|||..+|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 458999999999999999999999999999 888888777 799999999999999999999998
No 309
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.35 E-value=2.1e-12 Score=124.03 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=72.1
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEee
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (775)
.++|||+|||..+|+++|+++|++||.|..|.|+++..+|+++|||||+|.+.++|.+|+..|||..|.+ ..+.+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT----KTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC----ceEEEE
Confidence 4789999999999999999999999999999999999899999999999999999999999999999987 334444
Q ss_pred ccCC
Q 004069 453 LSRP 456 (775)
Q Consensus 453 ~~~~ 456 (775)
++.+
T Consensus 78 ~~~~ 81 (167)
T 1fxl_A 78 YARP 81 (167)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 4443
No 310
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.35 E-value=1.6e-12 Score=125.22 Aligned_cols=81 Identities=17% Similarity=0.376 Sum_probs=73.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
+.++|||+|||..+|+++|+++|++||.|..|.|+++..+++++|||||+|.+.++|++|+..|||..|.| ..+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN----KRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC----cEEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999986 34445
Q ss_pred eccCC
Q 004069 452 RLSRP 456 (775)
Q Consensus 452 ~~~~~ 456 (775)
.++.+
T Consensus 78 ~~~~~ 82 (168)
T 1b7f_A 78 SYARP 82 (168)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 55544
No 311
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=111.22 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=67.8
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...+|||+|||+.+|+++|+++|.+||.|..| +.+..++. ||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45689999999999999999999999999987 55555554 99999999999999999 99999999999999875
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 312
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=114.49 Aligned_cols=77 Identities=26% Similarity=0.414 Sum_probs=69.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+|+++|+++|.+||.|. +.++.+ .++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456899999999999999999999999997 666653 678999999999999999999999999999999999876
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 313
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.9e-13 Score=122.02 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||..+|+++|+++|.+||.|..|.+..+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45789999999999999999999999998433222222268899999999999999999999999999999999999885
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 104 ~~ 105 (115)
T 2cpx_A 104 NK 105 (115)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 314
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.34 E-value=1.7e-12 Score=115.52 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=71.3
Q ss_pred HhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
......++|||+|||..+|+++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345567899999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred cCCCCC
Q 004069 271 TPSQDS 276 (775)
Q Consensus 271 ~~a~~~ 276 (775)
.++...
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 988654
No 315
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=2.6e-13 Score=127.52 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=66.1
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEE--E---ecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIE--L---ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~--i---~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (775)
+.++|||+|||+.+|+++|+.+|.+||.|..|. + ++...+++++|||||+|.+.++|.+||..|||..|.|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g---- 119 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG---- 119 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC----
Confidence 458999999999999999999999999987641 1 1112368899999999999999999999999999987
Q ss_pred EEEEeeccCC
Q 004069 447 AKVRARLSRP 456 (775)
Q Consensus 447 ~~v~~~~~~~ 456 (775)
..+.+.++++
T Consensus 120 ~~l~V~~a~~ 129 (143)
T 3egn_A 120 KPMVVQFARS 129 (143)
T ss_dssp EECEEEECCC
T ss_pred cEEEEEECCC
Confidence 4444555544
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=113.82 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=61.9
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEE-EEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKI-ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|||..+|+++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|++||..|||..|.|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34899999999999999999999999999999 588776544 3999999999999999999999998743
No 317
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.33 E-value=3.4e-12 Score=112.73 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=63.8
Q ss_pred ccccceecCCCCC-----CCCHHHHHHHHhccCCEEEEEEecCCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPA-----SWDEDRVRELLKNYGEITKIELARNMPS-AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~-----~~t~~~L~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.++++|+|.||.. ..++++|+++|++||.|..|.|++++.+ +.++|||||+|.+.++|.+|+..|||+.|.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568999999963 2378999999999999999999998654 6889999999999999999999999999987
No 318
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=111.92 Aligned_cols=75 Identities=27% Similarity=0.467 Sum_probs=69.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||..+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456789999999999999999999999999999997 349999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 654
No 319
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.33 E-value=3e-12 Score=111.67 Aligned_cols=77 Identities=22% Similarity=0.433 Sum_probs=70.2
Q ss_pred hccCccEEEEcCCCC-CCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 192 RKRKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 192 ~~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
.....++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445678999999998 99999999999999999999983 789999999999999999999999999999999
Q ss_pred cCCCCC
Q 004069 271 TPSQDS 276 (775)
Q Consensus 271 ~~a~~~ 276 (775)
.++...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 887543
No 320
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=111.36 Aligned_cols=75 Identities=25% Similarity=0.531 Sum_probs=69.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 456789999999999999999999999999999997 349999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 321
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.33 E-value=2.5e-12 Score=109.57 Aligned_cols=66 Identities=14% Similarity=0.424 Sum_probs=61.3
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhcc----C-------CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNY----G-------EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 439 (775)
.+.++|||+|||..+|+++|+++|.+| | .|..|.+.++ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 345899999999999999999999999 8 9999999866 899999999999999999 999999
Q ss_pred cCCC
Q 004069 440 LGEG 443 (775)
Q Consensus 440 ~~g~ 443 (775)
|.|+
T Consensus 77 ~~g~ 80 (87)
T 2hzc_A 77 FQGQ 80 (87)
T ss_dssp ETTE
T ss_pred ECCe
Confidence 9873
No 322
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.2e-12 Score=112.21 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=68.3
Q ss_pred cCccEEEEcCCCC-CCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 194 RKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~-~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
...++|||+|||+ .+|+++|+++|.+||.|..|.|. +|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4577899999998 99999999999999999999984 78999999999999999999999999999999988
Q ss_pred CCC
Q 004069 273 SQD 275 (775)
Q Consensus 273 a~~ 275 (775)
+..
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 744
No 323
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.32 E-value=1.8e-12 Score=114.46 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 35679999999999999999999999999999986 4599999999999999999999999999999999885
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 82 ~~ 83 (103)
T 2dgu_A 82 PP 83 (103)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 324
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.32 E-value=2.1e-12 Score=110.41 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=59.9
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..++|||+|||..+++++|+++|.+| .|..|.|. +++|||||+|.+.++|++|+..|||..|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34899999999999999999999999 99999985 469999999999999999999999999987
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.31 E-value=1.1e-12 Score=114.44 Aligned_cols=81 Identities=20% Similarity=0.420 Sum_probs=73.7
Q ss_pred cCccEEEEcCCCCCCcHHHHH----hhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~----~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
...++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|..|+..||+..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999 9999999999999873 467789999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004069 270 VTPSQDSD 277 (775)
Q Consensus 270 V~~a~~~~ 277 (775)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99886654
No 326
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=116.50 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=66.5
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCC---CCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT---KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~---g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
...++|||+|||+.+|+++|+++|.+||.|. +.++.+..+ ++++|||||+|.+.++|++||..|++ ++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3467899999999999999999999999999 888887776 79999999999999999999998843 66666665
Q ss_pred cCC
Q 004069 271 TPS 273 (775)
Q Consensus 271 ~~a 273 (775)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 327
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.1e-12 Score=111.17 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=68.5
Q ss_pred CccEEEEcCCCCCCcHHHHHhhcccc--CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQV--GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~--G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
..++|||+|||+.+|+++|+++|.+| |.|..|.+. ++||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45789999999999999999999999 999998874 67999999999999999999999999999999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 86 a~~~ 89 (99)
T 2cpd_A 86 AKPV 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 328
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.31 E-value=9.8e-13 Score=115.85 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=71.8
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||. ++..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45689999999999999999999999999999999997 89999999999999999999999 8889999999987763
No 329
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.2e-12 Score=116.78 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=71.6
Q ss_pred cEEEEcCC----CCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEcc----HHH----HHHHHH--hhcCCc
Q 004069 197 FEVFVGGL----DKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT----VEQ----ARQAVT--ELKNPV 262 (775)
Q Consensus 197 ~~l~V~nL----p~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s----~e~----A~~Al~--~l~~~~ 262 (775)
.+|||+|| |+.+++.+|+++|++||.|..|.++.|+.||.++|||||+|.+ ++. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 56999999 9999999999999999999999999999999999999999995 322 888988 789999
Q ss_pred ccCccccccCCCCC
Q 004069 263 INGKQCGVTPSQDS 276 (775)
Q Consensus 263 ~~gr~i~V~~a~~~ 276 (775)
|.|+.|+|......
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999865444
No 330
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.9e-12 Score=110.68 Aligned_cols=75 Identities=24% Similarity=0.409 Sum_probs=61.1
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++ +++..+.... +.|.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g--~~l~v 72 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKG--ISVHI 72 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETT--EEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCC--EEEEE
Confidence 3489999999999999999999999999999999865 68999999999999975 4555554333 55566
Q ss_pred eccCCC
Q 004069 452 RLSRPL 457 (775)
Q Consensus 452 ~~~~~~ 457 (775)
.++.++
T Consensus 73 ~~a~~~ 78 (88)
T 1wf0_A 73 SNAEPK 78 (88)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 666654
No 331
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=4.3e-12 Score=107.17 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=57.6
Q ss_pred cceecCCCCCCCCHHH----HHHHHhcc-CCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEE
Q 004069 374 KTVFVDGLPASWDEDR----VRELLKNY-GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~----L~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (775)
++|||+|||+.+++++ |+++|.+| |+|..| ++ |||||+|.+.++|++|++.|||..|.|+.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~---- 75 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR---- 75 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC----
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce----
Confidence 4499999999999887 55899999 599888 23 99999999999999999999999999833
Q ss_pred EEeeccCC
Q 004069 449 VRARLSRP 456 (775)
Q Consensus 449 v~~~~~~~ 456 (775)
+++.+++.
T Consensus 76 i~v~~A~~ 83 (96)
T 2diu_A 76 IIVSFTPK 83 (96)
T ss_dssp CEEESSCC
T ss_pred EEEEecCC
Confidence 44444443
No 332
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.30 E-value=1.1e-12 Score=114.01 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=69.5
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||..+|+++|+++|.+||.|..+ ..++.++|||||+|.+.++|.+||..|++..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 45789999999999999999999999988766 2457889999999999999999999999999999999998875
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=111.87 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=69.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEE-EEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV-RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v-~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..++|||+|||+.+|+++|+++|.+||.|..| .|+.+..++ .|||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999 577765543 3999999999999999999999999999999987
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 334
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.29 E-value=3.3e-12 Score=114.16 Aligned_cols=73 Identities=27% Similarity=0.528 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCC-CcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..++|||+|||+. +|+++|+++|.+||.|..|.| +++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3578999999999 999999999999999999998 4789999999999999999999999999999999988
Q ss_pred CC
Q 004069 274 QD 275 (775)
Q Consensus 274 ~~ 275 (775)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 335
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=8.1e-12 Score=105.46 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCcHHH----HHhhcccc-CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 197 FEVFVGGLDKDVVGDD----LRKVFSQV-GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~----L~~~f~~~-G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
++|||+|||+.+++++ |.++|.+| |+|..| ++ |+|||.|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 599988 23 999999999999999999999999999999999
Q ss_pred CCCCCCccccc
Q 004069 272 PSQDSDTLFLG 282 (775)
Q Consensus 272 ~a~~~~~l~V~ 282 (775)
++.....++..
T Consensus 80 ~A~~~sd~~~~ 90 (96)
T 2diu_A 80 FTPKNRELCET 90 (96)
T ss_dssp SSCCSCCCCCC
T ss_pred ecCCCcceeEe
Confidence 99888776653
No 336
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.28 E-value=7.9e-12 Score=123.57 Aligned_cols=71 Identities=20% Similarity=0.461 Sum_probs=67.0
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|++||.. ++..|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g 81 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG 81 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC
Confidence 4558999999999999999999999999999999999999999999999999999999999975 8888887
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.27 E-value=1.2e-11 Score=122.23 Aligned_cols=72 Identities=24% Similarity=0.448 Sum_probs=64.6
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...++|||+|||..+|+++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|++||..++ ..|.|..
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~ 178 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETD 178 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEE
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEE
Confidence 345899999999999999999999999999999999986 58899999999999999999998665 5888743
No 338
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.26 E-value=1.6e-11 Score=123.42 Aligned_cols=84 Identities=23% Similarity=0.475 Sum_probs=79.1
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
.....+|||+|||..+|+++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 202 a~~~ 205 (216)
T 2qfj_A 202 AVTP 205 (216)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 7554
No 339
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.26 E-value=1.2e-11 Score=112.60 Aligned_cols=79 Identities=24% Similarity=0.279 Sum_probs=70.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcce-EEEEEccHHHHHHHHHhhcCCcccC--ccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF-AFLRFATVEQARQAVTELKNPVING--KQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~-afV~F~s~e~A~~Al~~l~~~~~~g--r~i~V 270 (775)
..-..|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|..|+..||+..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34456889999999999999999999999999998863 3677 9999999999999999999999988 88999
Q ss_pred cCCCCCC
Q 004069 271 TPSQDSD 277 (775)
Q Consensus 271 ~~a~~~~ 277 (775)
.+++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9886653
No 340
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.8e-12 Score=110.81 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=66.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCc-eEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcC-CcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN-PVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~-~~~~gr~i~V~~ 272 (775)
..++|||+|||..+|+++|+++|.+||. |..+.+. +++||||+|.+.++|.+||..||+ ..|.|+.|.|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4568999999999999999999999999 5555553 478999999999999999999999 999999999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8554
No 341
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.25 E-value=8.3e-12 Score=106.28 Aligned_cols=71 Identities=23% Similarity=0.475 Sum_probs=65.4
Q ss_pred CccEEEEcCCCCCCcHHHHHhhcccc----C-------ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQV----G-------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (775)
..++|||+|||+.+++++|+++|.+| | .|..+.+..+ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45789999999999999999999999 8 8999998743 799999999999999999 8999999
Q ss_pred cCccccccC
Q 004069 264 NGKQCGVTP 272 (775)
Q Consensus 264 ~gr~i~V~~ 272 (775)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999998864
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.25 E-value=1.2e-12 Score=122.97 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=70.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEE--------EEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV--------RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v--------~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
...++|||+|||+.+|+++|+++|.+||.|..| .+. .++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 456789999999999999999999999988764 333 458899999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 004069 266 KQCGVTPSQDS 276 (775)
Q Consensus 266 r~i~V~~a~~~ 276 (775)
+.|.|.++...
T Consensus 120 ~~l~V~~a~~~ 130 (143)
T 3egn_A 120 KPMVVQFARSA 130 (143)
T ss_dssp EECEEEECCCS
T ss_pred cEEEEEECCCC
Confidence 99999988543
No 343
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.6e-11 Score=106.88 Aligned_cols=75 Identities=28% Similarity=0.419 Sum_probs=68.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|| .+|+++|+++|.+||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34678999996 89999999999999999999984 46899999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 344
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.25 E-value=1.2e-11 Score=116.86 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=70.1
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC--ccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING--KQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g--r~i~V~~ 272 (775)
.-.+|||+||++.+|+++|+++|++||.|..|.|+.. .+++||||+|.+.++|..|+..||+..|.| +.|.|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456999999999999999999999999999999753 257899999999999999999999999966 9999999
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
++..
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8755
No 345
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=2.2e-11 Score=110.40 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcce-EEEEEccHHHHHHHHHhhcCCcccC--ccccccCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF-AFLRFATVEQARQAVTELKNPVING--KQCGVTPS 273 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~-afV~F~s~e~A~~Al~~l~~~~~~g--r~i~V~~a 273 (775)
..|||+||++.+|+++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|+..||+..|.| +.|.|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999999752 286 9999999999999999999999988 58999988
Q ss_pred CCCC
Q 004069 274 QDSD 277 (775)
Q Consensus 274 ~~~~ 277 (775)
....
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.23 E-value=1.1e-11 Score=112.75 Aligned_cols=65 Identities=17% Similarity=0.367 Sum_probs=59.2
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..++|||+|| .+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|++||..|||..|.|..
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4589999996 699999999999999999999973 4899999999999999999999999998733
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.23 E-value=2.6e-11 Score=107.03 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=71.6
Q ss_pred cCccEEEEcCCCC-----CCcHHHHHhhccccCceEEEEEeecCCC-CCCcceEEEEEccHHHHHHHHHhhcCCcccCcc
Q 004069 194 RKEFEVFVGGLDK-----DVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (775)
Q Consensus 194 ~~~~~l~V~nLp~-----~~te~~L~~~f~~~G~v~~v~i~~d~~~-g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~ 267 (775)
....+|+|.||.. +.++++|+++|++||.|+.|.|+.++.+ +.++|||||+|.+.++|.+|+..||+..|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999973 2478999999999999999999998654 688999999999999999999999999999999
Q ss_pred ccccCCC
Q 004069 268 CGVTPSQ 274 (775)
Q Consensus 268 i~V~~a~ 274 (775)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9998763
No 348
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.21 E-value=1.2e-11 Score=105.97 Aligned_cols=74 Identities=28% Similarity=0.459 Sum_probs=61.0
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCc--ccCccccc
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV--INGKQCGV 270 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~--~~gr~i~V 270 (775)
.....+|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345778999999999999999999999999999999864 78999999999999984 34443 45888888
Q ss_pred cCCCC
Q 004069 271 TPSQD 275 (775)
Q Consensus 271 ~~a~~ 275 (775)
.++..
T Consensus 79 ~~a~~ 83 (89)
T 3d2w_A 79 SNAEP 83 (89)
T ss_dssp EECC-
T ss_pred EEcCC
Confidence 87754
No 349
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.21 E-value=1.8e-11 Score=121.26 Aligned_cols=83 Identities=20% Similarity=0.415 Sum_probs=78.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
....+|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34678999999999999999999999999999999999888999999999999999999999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 350
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.20 E-value=8.9e-12 Score=119.78 Aligned_cols=79 Identities=22% Similarity=0.474 Sum_probs=75.0
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
..+|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999998899999999999999999999998 899999999999998754
No 351
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.1e-11 Score=110.26 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=63.6
Q ss_pred cCccEEEE--cCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc-----cCc
Q 004069 194 RKEFEVFV--GGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-----NGK 266 (775)
Q Consensus 194 ~~~~~l~V--~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~-----~gr 266 (775)
....+||| +||++.+|+++|+++|++||.|..|.|+. .+|||||+|.+.++|++|+..||+..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34667999 77999999999999999999999988763 378999999999999999999999987 566
Q ss_pred cccccC
Q 004069 267 QCGVTP 272 (775)
Q Consensus 267 ~i~V~~ 272 (775)
.|.|.+
T Consensus 97 ~l~v~~ 102 (114)
T 2cq2_A 97 TLYLNF 102 (114)
T ss_dssp ECEEEE
T ss_pred EEEEEe
Confidence 776654
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.19 E-value=2.6e-11 Score=107.13 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=62.3
Q ss_pred cccceecCCCC--CCC--------CHHHHHHHHhccCCEEEEEEecCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 004069 372 QVKTVFVDGLP--ASW--------DEDRVRELLKNYGEITKIELARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (775)
Q Consensus 372 ~~~~l~V~nLp--~~~--------t~~~L~~~f~~~G~v~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~~ 439 (775)
++++|+|.|+- ..+ ..++|+++|++||.|..|.|+++..+ +.++|||||+|.+.++|++|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45788888883 333 24799999999999999999988765 4689999999999999999999999999
Q ss_pred cCCCc
Q 004069 440 LGEGD 444 (775)
Q Consensus 440 ~~g~~ 444 (775)
|.|+.
T Consensus 84 f~GR~ 88 (105)
T 3v4m_A 84 FANRV 88 (105)
T ss_dssp ETTEE
T ss_pred eCCCE
Confidence 98743
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.19 E-value=2.3e-11 Score=120.14 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=71.8
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..++ ..|.|+.|.|.+.
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 345789999999999999999999999999999999875 48899999999999999999998665 5899999999876
Q ss_pred CC
Q 004069 274 QD 275 (775)
Q Consensus 274 ~~ 275 (775)
.+
T Consensus 185 ~~ 186 (193)
T 2voo_A 185 DD 186 (193)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.19 E-value=2.3e-11 Score=122.94 Aligned_cols=64 Identities=28% Similarity=0.516 Sum_probs=60.3
Q ss_pred ccccceecCCCCCCC---------CHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 004069 371 AQVKTVFVDGLPASW---------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~---------t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (775)
...++|||+||+..+ ++++|+++|++||.|..|.|+.+ +|||||+|.+.++|+.|+..|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 355899999999998 79999999999999999999965 89999999999999999999999999
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.6e-11 Score=104.91 Aligned_cols=75 Identities=31% Similarity=0.472 Sum_probs=64.0
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4678999999999999999999999999999999754 689999999999999865432 345689999998875
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
..
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.15 E-value=4.8e-11 Score=108.41 Aligned_cols=76 Identities=28% Similarity=0.411 Sum_probs=68.9
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
....++|||+|| .+|+++|+++|.+||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345788999996 69999999999999999999985 4689999999999999999999999999999999998
Q ss_pred CCCC
Q 004069 273 SQDS 276 (775)
Q Consensus 273 a~~~ 276 (775)
+...
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 8654
No 357
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.15 E-value=7e-11 Score=124.04 Aligned_cols=70 Identities=20% Similarity=0.407 Sum_probs=64.5
Q ss_pred ccccceecCCCCCCCCHHHHH----HHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
.+.++|||+|||..+|+++|+ ++|.+||.|..|.|++ +++++|||||+|.+.++|++||..|||..|.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345899999999999999977 8999999999999986 678999999999999999999999999999873
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.14 E-value=5.8e-11 Score=106.94 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=62.8
Q ss_pred cccceecCCCCCC-----CCHHHHHHHHhccCCEEEEEEecCCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPAS-----WDEDRVRELLKNYGEITKIELARNMP----SAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~-----~t~~~L~~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
++++|+|.||-.. -.+++|+++|++||.|..|.|+++.. ++.++|||||+|.+.++|.+|+..|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4588999998432 23689999999999999999998864 46778999999999999999999999999998
Q ss_pred Cc
Q 004069 443 GD 444 (775)
Q Consensus 443 ~~ 444 (775)
+.
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 43
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.3e-10 Score=104.15 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=63.0
Q ss_pred ccccceecCCCCCCCC-----------HHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 004069 371 AQVKTVFVDGLPASWD-----------EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t-----------~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 439 (775)
.++++|+|.||..... +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|++||..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4568999999954432 5899999999999999976 332 379999999999999999999999999
Q ss_pred cCCCcceEEEEeeccCC
Q 004069 440 LGEGDNKAKVRARLSRP 456 (775)
Q Consensus 440 ~~g~~~~~~v~~~~~~~ 456 (775)
|.| ..|.+.++.+
T Consensus 89 ~~g----r~l~v~~a~~ 101 (112)
T 2dit_A 89 FGG----RQITAQAWDG 101 (112)
T ss_dssp ETT----EECEEEECCS
T ss_pred ECC----cEEEEEEeCC
Confidence 986 3444455444
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.10 E-value=9e-11 Score=118.53 Aligned_cols=78 Identities=24% Similarity=0.489 Sum_probs=70.2
Q ss_pred ccCccEEEEcCCCCCC---------cHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc
Q 004069 193 KRKEFEVFVGGLDKDV---------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~---------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (775)
.....+|||+||+..+ ++++|+++|++||.|..|+|+. ++|||||+|.+.++|+.|+..|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3457889999999998 8999999999999999999985 489999999999999999999999999
Q ss_pred ------------cCccccccCCCCC
Q 004069 264 ------------NGKQCGVTPSQDS 276 (775)
Q Consensus 264 ------------~gr~i~V~~a~~~ 276 (775)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999998644
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.10 E-value=4.3e-11 Score=105.52 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=56.8
Q ss_pred cCCCCCCCCHHHHHHHH------------hccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 378 VDGLPASWDEDRVRELL------------KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 378 V~nLp~~~t~~~L~~~f------------~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
+.||++.+++++|+++| ++||.|..|.|+++.. ++++|||||+|.+.++|++|+..|||+.|.|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777777777776666 9999999999998864 789999999999999999999999999999743
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.1e-10 Score=102.67 Aligned_cols=83 Identities=20% Similarity=0.297 Sum_probs=69.9
Q ss_pred ccCccEEEEcCCCCCCc-----------HHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCC
Q 004069 193 KRKEFEVFVGGLDKDVV-----------GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~t-----------e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~ 261 (775)
.....+|+|.||....+ +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|.+|+..||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34577899999954432 5899999999999999966 443 37999999999999999999999999
Q ss_pred cccCccccccCCCCCCcc
Q 004069 262 VINGKQCGVTPSQDSDTL 279 (775)
Q Consensus 262 ~~~gr~i~V~~a~~~~~l 279 (775)
.|.|+.|.|.++......
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999988665443
No 363
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.07 E-value=1.3e-10 Score=112.55 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...+|||+|||..+|+++|+++|.+||.|..+ ..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 45789999999999999999999999988766 4668899999999999999999999999999999999998875
Q ss_pred C
Q 004069 275 D 275 (775)
Q Consensus 275 ~ 275 (775)
+
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 4
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=2.5e-10 Score=121.60 Aligned_cols=78 Identities=13% Similarity=0.270 Sum_probs=64.2
Q ss_pred ccccceecCC--CCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC-cceE
Q 004069 371 AQVKTVFVDG--LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG-DNKA 447 (775)
Q Consensus 371 ~~~~~l~V~n--Lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~~~~ 447 (775)
.++++|||+| |+..+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|++||+.|||+.+.+. +..+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 4568999999 578899999999999999999988864 389999999999999999999999998422 2333
Q ss_pred EEEeecc
Q 004069 448 KVRARLS 454 (775)
Q Consensus 448 ~v~~~~~ 454 (775)
.+.+.+.
T Consensus 90 ~ly~~~~ 96 (345)
T 3tht_A 90 TLYLNFV 96 (345)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 4444444
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.02 E-value=3e-10 Score=100.26 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=68.0
Q ss_pred CccEEEEcCC--CCCC--------cHHHHHhhccccCceEEEEEeecCCC--CCCcceEEEEEccHHHHHHHHHhhcCCc
Q 004069 195 KEFEVFVGGL--DKDV--------VGDDLRKVFSQVGEVTEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPV 262 (775)
Q Consensus 195 ~~~~l~V~nL--p~~~--------te~~L~~~f~~~G~v~~v~i~~d~~~--g~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (775)
...+|.|.|| |..+ ++++|+++|++||.|+.|.|+++..+ +.++|+|||+|.+.++|.+|+..||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567899998 3333 34689999999999999999988654 4689999999999999999999999999
Q ss_pred ccCccccccCC
Q 004069 263 INGKQCGVTPS 273 (775)
Q Consensus 263 ~~gr~i~V~~a 273 (775)
|.|+.|.|..+
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999998764
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.00 E-value=1.1e-10 Score=102.89 Aligned_cols=72 Identities=26% Similarity=0.395 Sum_probs=61.2
Q ss_pred EcCCCCCCcHHHHHhhc------------cccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 201 VGGLDKDVVGDDLRKVF------------SQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 201 V~nLp~~~te~~L~~~f------------~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
+.||++.+++++|+++| ++||.|+.|.|+++.. ++++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666666666555 9999999999998754 7899999999999999999999999999999999
Q ss_pred cccCC
Q 004069 269 GVTPS 273 (775)
Q Consensus 269 ~V~~a 273 (775)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 98764
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.98 E-value=5e-10 Score=100.81 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=70.7
Q ss_pred hccCccEEEEcCCCC-----CCcHHHHHhhccccCceEEEEEeecCC----CCCCcceEEEEEccHHHHHHHHHhhcCCc
Q 004069 192 RKRKEFEVFVGGLDK-----DVVGDDLRKVFSQVGEVTEVRLMMNPQ----TKKNKGFAFLRFATVEQARQAVTELKNPV 262 (775)
Q Consensus 192 ~~~~~~~l~V~nLp~-----~~te~~L~~~f~~~G~v~~v~i~~d~~----~g~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (775)
......+|+|.||-. +-.+++|++.|++||.|..|.|+++.. ++.++|++||+|.+.++|.+|+..||+..
T Consensus 16 ~~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 16 RKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp HHHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 334688999999942 234689999999999999999998864 35678999999999999999999999999
Q ss_pred ccCccccccCC
Q 004069 263 INGKQCGVTPS 273 (775)
Q Consensus 263 ~~gr~i~V~~a 273 (775)
|.|+.|.|.++
T Consensus 96 f~GR~i~v~~~ 106 (118)
T 3ue2_A 96 FAGRKVVAEVY 106 (118)
T ss_dssp ETTEECEEEEE
T ss_pred ECCcEEEEEEc
Confidence 99999998764
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.7e-09 Score=94.24 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 004069 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (775)
Q Consensus 383 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 437 (775)
..+|+++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.||..+++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 568999999999999999999998 35799999999999999999998665
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.93 E-value=1.6e-09 Score=96.79 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=58.4
Q ss_pred ccccceecCCCCCCC----------CHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 004069 371 AQVKTVFVDGLPASW----------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~----------t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (775)
.++++|.|.|+-... .+++|+++|++||.|..|.|.++. .+|||||+|.+.++|.+|+..|||+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345788888874332 236899999999999999998763 489999999999999999999999999
Q ss_pred CCCc
Q 004069 441 GEGD 444 (775)
Q Consensus 441 ~g~~ 444 (775)
.|+.
T Consensus 81 ~GR~ 84 (114)
T 3s6e_A 81 AGKM 84 (114)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 9844
No 370
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.7e-09 Score=94.56 Aligned_cols=69 Identities=23% Similarity=0.232 Sum_probs=60.6
Q ss_pred cccccceecCCCCCC-CCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCccCCCc
Q 004069 370 MAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT-HDAAVTCAKSIN--NAELGEGD 444 (775)
Q Consensus 370 ~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~-~~~A~~A~~~l~--g~~~~g~~ 444 (775)
+...+.|+|+||+.. ++.++|+++|++||.|..|+|+++. -+|||+|.+ ..+|..|+..|| +..|.+..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 345689999999999 9999999999999999999999884 379999999 899999999995 66777633
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1e-08 Score=89.32 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=56.3
Q ss_pred CCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCCC
Q 004069 206 KDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (775)
Q Consensus 206 ~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~ 276 (775)
..+++++|+++|.+||.|..|.|+ ++++|||||+|.+.++|..||..+++ +.++.|.|.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 458999999999999999999998 36799999999999999999998544 67999999887554
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.67 E-value=2.2e-08 Score=89.37 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=63.1
Q ss_pred CccEEEEcCCCCCC----------cHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCccc
Q 004069 195 KEFEVFVGGLDKDV----------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (775)
Q Consensus 195 ~~~~l~V~nLp~~~----------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (775)
...+|.|.||=... .+++|+++|++||.|+.|.|.++. .+|||||+|.+.++|.+|+..||+..|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35678888884322 246789999999999999987542 5899999999999999999999999999
Q ss_pred CccccccCC
Q 004069 265 GKQCGVTPS 273 (775)
Q Consensus 265 gr~i~V~~a 273 (775)
|+.|.|.++
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999998764
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.66 E-value=2e-08 Score=106.90 Aligned_cols=64 Identities=23% Similarity=0.370 Sum_probs=57.3
Q ss_pred cCccEEEEcC--CCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc
Q 004069 194 RKEFEVFVGG--LDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (775)
Q Consensus 194 ~~~~~l~V~n--Lp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (775)
....+|||+| |++.+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|++|++.||+..+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4466799999 578999999999999999999887753 479999999999999999999999877
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=9.2e-08 Score=85.49 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=61.7
Q ss_pred cCccEEEEcCCCCC-CcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEcc-HHHHHHHHHhhc--CCcccCcccc
Q 004069 194 RKEFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT-VEQARQAVTELK--NPVINGKQCG 269 (775)
Q Consensus 194 ~~~~~l~V~nLp~~-~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s-~e~A~~Al~~l~--~~~~~gr~i~ 269 (775)
...+.|+|+||+.. ++.++|+++|++||.|..|.++.+.. .|||.|.+ ..+|..|+.+|+ +..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35778999999999 99999999999999999999987643 59999999 899999999984 5667776655
Q ss_pred cc
Q 004069 270 VT 271 (775)
Q Consensus 270 V~ 271 (775)
+.
T Consensus 90 ~e 91 (121)
T 1owx_A 90 WE 91 (121)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=1e-07 Score=79.81 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=54.3
Q ss_pred cceecCCCC----CCCCH----HHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 374 KTVFVDGLP----ASWDE----DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 374 ~~l~V~nLp----~~~t~----~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
-+|+|..++ .++-. .+|.+.|.+||.|..|+|+.+ .+||+|.+.++|.+||. |||..|.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G--- 75 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN--- 75 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT---
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC---
Confidence 566666655 22323 679999999999999999976 49999999999999998 99999987
Q ss_pred eEEEEeeccC
Q 004069 446 KAKVRARLSR 455 (775)
Q Consensus 446 ~~~v~~~~~~ 455 (775)
+.+++.+.+
T Consensus 76 -r~LkV~lkt 84 (91)
T 2dnr_A 76 -RTITIALKS 84 (91)
T ss_dssp -EEEEEEECC
T ss_pred -eEEEEEeCC
Confidence 444444444
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.51 E-value=1.1e-06 Score=88.56 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHhccCCEEEEEEecCC----CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEE
Q 004069 384 SWDEDRVRELLKNYGEITKIELARNM----PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (775)
Q Consensus 384 ~~t~~~L~~~f~~~G~v~~v~i~~~~----~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (775)
.-.+++|++.|.+||.|..|.|+++. .++.++||+||+|.+.++|++||..|||+.|.|+.+.+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~ 208 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAE 208 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEE
Confidence 34678999999999999999998554 445899999999999999999999999999998554433
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=2.1e-07 Score=77.87 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=59.5
Q ss_pred CccEEEEcCCCC----CCcH----HHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCc
Q 004069 195 KEFEVFVGGLDK----DVVG----DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK 266 (775)
Q Consensus 195 ~~~~l~V~nLp~----~~te----~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr 266 (775)
...||+|.-++. .+-. .+|.+.|.+||.|..++|+.+. +||+|.+.++|.+||. ||+..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 345788877662 3333 6789999999999999998763 8999999999999999 999999999
Q ss_pred cccccCCC
Q 004069 267 QCGVTPSQ 274 (775)
Q Consensus 267 ~i~V~~a~ 274 (775)
.|+|..+.
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998764
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=7.2e-07 Score=74.98 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=52.2
Q ss_pred cccceecCCCCCC-----CCH----HHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPAS-----WDE----DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~-----~t~----~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+--+|+|..++.. +-. .+|.+.|.+||.|..|+|+.+ -+||+|.+.++|.+||. |||..|.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3467888877632 222 579999999999999999977 39999999999999998 99999997
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=5.4e-07 Score=75.72 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=60.0
Q ss_pred cCccEEEEcCCCCC-----CcH----HHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCccc
Q 004069 194 RKEFEVFVGGLDKD-----VVG----DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (775)
Q Consensus 194 ~~~~~l~V~nLp~~-----~te----~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (775)
....||+|.-++.. +-. .+|.+.|.+||.|+.++|+.+. +||+|.+.++|.+||. |++..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34568999888643 222 5689999999999999999763 9999999999999999 9999999
Q ss_pred CccccccCC
Q 004069 265 GKQCGVTPS 273 (775)
Q Consensus 265 gr~i~V~~a 273 (775)
|+.|+|...
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999998753
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.06 E-value=3.7e-06 Score=84.53 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=59.1
Q ss_pred CcHHHHHhhccccCceEEEEEeecCC----CCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 208 VVGDDLRKVFSQVGEVTEVRLMMNPQ----TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 208 ~te~~L~~~f~~~G~v~~v~i~~d~~----~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
-.+++|.+.|.+||.|..|.|+.+.. ++.++|++||+|.+.++|.+|+..||+..|.|+.|.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 45678999999999999999986544 4588999999999999999999999999999999998765
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=8.7e-06 Score=69.64 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=60.5
Q ss_pred cceecCCCCCCCCHHHHHHHHhcc-----CCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNY-----GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
++|-|-|||..+++..|+.++..+ |.|+.|.|+.+ -+=|+|+|.+...|-+|...|||.+|.|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCe
Confidence 789999999999999999999999 99999999988 56899999999999999999999999963
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00038 Score=59.18 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhcccc-----CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQV-----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~-----G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
...+|.|.|||..+.++.|.-+|+.- |.|..|.... +-|+|+|.+...|++.|+. ..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 35679999999999999999999872 5888888753 4699999999999999984 46788899999
Q ss_pred ccCC--CCCCcccccCcccccc
Q 004069 270 VTPS--QDSDTLFLGNICKTWT 289 (775)
Q Consensus 270 V~~a--~~~~~l~V~nLp~~~t 289 (775)
|.+. .+..+|++.+|++.+.
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 9765 5678999999988653
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0001 Score=63.04 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=65.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhcccc-----CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQV-----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~-----G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
...++|-|-|||..+++..|+.|+..+ |.|+.|.++.+. +=|+|+|.+...|-+|.-.|++..|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347789999999999999999999999 999999998763 349999999999999999999999999999
Q ss_pred ccc
Q 004069 269 GVT 271 (775)
Q Consensus 269 ~V~ 271 (775)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.60 E-value=0.0062 Score=51.16 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=57.4
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCC--CcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK--NKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~--~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
++|.|++||+.+|++++.+.+..+..+.....+....+.. .-.-|||.|.+.+++......+++..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4699999999999999999999998888777776554332 34569999999999999999999987654
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.59 E-value=0.0045 Score=52.01 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=59.4
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
++|.|.+||+.+|++++.+.+..+..+.....+....+.+ .-.-|+|.|.+.+++....+.++|+.|...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999999888887766544332 235699999999999999999999998764
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.50 E-value=0.0051 Score=51.62 Aligned_cols=54 Identities=17% Similarity=0.448 Sum_probs=45.2
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (775)
..++| ++|..+...||.++|+.||-| .|..+.| .-|||.|.+.+.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999955 3444444 489999999999999999775
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.46 E-value=0.0085 Score=52.69 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=52.5
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.+.|.|.++|... ...|..+|++||.|+...... ...+..|.|.+..+|++||. .||..|.+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 4778899999874 677889999999999888732 25799999999999999987 79999875
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.46 E-value=0.015 Score=49.50 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=65.0
Q ss_pred CCcccccCccccccHHHHHHHHhh---cCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCC
Q 004069 276 SDTLFLGNICKTWTKEALKEKLKH---YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (775)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~---~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~ 352 (775)
..+|.|.|||..+.++.|.-+|+. .|...|..+.... +-|+|+|.+...|...|+.- .+.+ .+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k~-~H~L---~~~ 74 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQA-DHEL---HGA 74 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTCS-CCBS---SSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcCC-ccee---cCe
Confidence 468999999999999999999987 3555788887753 56899999999999888631 1111 245
Q ss_pred CceecccCCCCCCCccccccccceecCCCCCCCC
Q 004069 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWD 386 (775)
Q Consensus 353 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t 386 (775)
.+.|.-. ......+|++.+|++.++
T Consensus 75 ~LsV~P~---------~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPA---------PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEEC---------CCCCCCCCCCCSCCCCCC
T ss_pred EEEEEcC---------CCCCcceEeeecCCCCCC
Confidence 5555332 113348999999998864
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.25 E-value=0.0038 Score=53.34 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=54.7
Q ss_pred cceecCCCCCCC-C----HHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 374 KTVFVDGLPASW-D----EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 374 ~~l~V~nLp~~~-t----~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
++|+|.||+..+ + ++.++.+|..|+.+......+. -.-..|.|.+.++|.+|-..||+..|.|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCc
Confidence 789999998764 2 3678999999999888887765 34689999999999999999999999984
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.19 E-value=0.0061 Score=52.07 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=61.4
Q ss_pred ccEEEEcCCCCCC-c----HHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 196 EFEVFVGGLDKDV-V----GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 196 ~~~l~V~nLp~~~-t----e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
..+|+|.||+..+ + .+.|+++|.+|+++....+++. -.-..|.|.+.++|.+|-..||+..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4579999998754 2 3578899999999988888753 335799999999999999999999999999988
Q ss_pred cCCC
Q 004069 271 TPSQ 274 (775)
Q Consensus 271 ~~a~ 274 (775)
-.++
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7775
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.01 E-value=0.0059 Score=51.44 Aligned_cols=54 Identities=17% Similarity=0.447 Sum_probs=45.6
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (775)
..++| ++|..+...||.++|+.||-| .|..+.| .-|||.|.+.+.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999944 5555554 489999999999999999875
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.82 E-value=0.011 Score=49.71 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=44.9
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (775)
.+.++| ++|..+...+|.++|+.||.|. |+.+-| ..|||.|.+++.|..||..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999999443 555544 359999999999999999763
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.75 E-value=0.012 Score=49.53 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=44.1
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (775)
.++| ++|..+...+|.++|+.|| -..|..+-| ..|||.|.+++.|..||..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3555 9999999999999999999 444666654 359999999999999999764
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.67 E-value=0.03 Score=49.24 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=56.0
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC-ccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g-r~i~V~~a 273 (775)
..+.|.|-++|... ...|..+|++||.|+..... ....+..|.|.+..+|++||. .|+..|.+ -.|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35669999999885 56778899999999988872 235689999999999999999 58888874 44555543
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.48 E-value=0.019 Score=48.46 Aligned_cols=70 Identities=7% Similarity=0.064 Sum_probs=52.4
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCC--CcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK--NKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~--~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
..+|.|+.||+.+|++++.+.+..+-.+.....+....+.+ .-.-|||.|.+.++.......+++..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45699999999999999999888766654444333322221 23458999999999999999999877644
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.93 E-value=0.041 Score=46.45 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=54.4
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
..+|.|..||+.+|++++.+.+..+=.+.....+....+.+ .-..|+|.|.+.+++..-.+..+|..|...
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 47899999999999999998888765554444433322221 124589999999999999999999998764
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.50 E-value=0.049 Score=59.79 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=52.1
Q ss_pred chhhhHHHHhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHh
Q 004069 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257 (775)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~ 257 (775)
.-.+...+++.+..++|+|. .|..+++.+|.++|++||+|..+.+..+. .-||.|+|.+.+++..++..
T Consensus 40 ~~~~~~~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 40 RFSEMQNERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp CCHHHHHHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred CHHHHHHHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 34455667777888999997 79999999999999999999999987542 37999999999999977653
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.40 E-value=0.11 Score=46.34 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=48.3
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEE-EEEecCC--------CCC-----CcccEEEEEeCCHHHHHHHHHHhCCCc
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNM--------PSA-----KRKDFGFVTFDTHDAAVTCAKSINNAE 439 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~~~--------~~g-----~~~g~afV~F~~~~~A~~A~~~l~g~~ 439 (775)
.-|.|.+.|...+ ..|.++|++||.|.. +.+.+.. ... ....+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 5677888876654 457788999999876 2222100 000 135788999999999999976 89999
Q ss_pred cCCC
Q 004069 440 LGEG 443 (775)
Q Consensus 440 ~~g~ 443 (775)
|.|.
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 9874
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.55 E-value=0.1 Score=46.47 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=52.2
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeec---------CCCC-----CCcceEEEEEccHHHHHHHHHhhcCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN---------PQTK-----KNKGFAFLRFATVEQARQAVTELKNP 261 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d---------~~~g-----~~~g~afV~F~s~e~A~~Al~~l~~~ 261 (775)
+..|.|=+.|...+. .|.++|++||.|++-.-... .... ....+..|+|.+..+|.+||. .|+.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 455888888766554 56678999999876221110 0001 134678999999999999999 5999
Q ss_pred cccCccccccCC
Q 004069 262 VINGKQCGVTPS 273 (775)
Q Consensus 262 ~~~gr~i~V~~a 273 (775)
+|.|.-|-|.++
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999876666553
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.32 E-value=0.075 Score=58.33 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=41.3
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
+.|+|. .|..+++.+|.++|++||.|..+.+-.+. .-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 788887 78889999999999999999999988652 4799999999999887743
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.12 E-value=5.8 Score=44.17 Aligned_cols=56 Identities=16% Similarity=0.413 Sum_probs=45.2
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 437 (775)
...++|+ +|..+...+|.++|+.||.| .|..+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3455565 99999999999999999965 5555433 4899999999999999998864
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=59.10 E-value=12 Score=41.76 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=43.6
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~ 260 (775)
..++|+ +|..+...+|.++|+.||.| .|..+. ...|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 345555 99999999999999999954 455443 34699999999999999998753
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=56.95 E-value=38 Score=27.40 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=47.4
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 437 (775)
+.|-|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.++-.-||..|-+
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 567799999999998888888888877788876 57899999999999999987643
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=52.87 E-value=45 Score=27.00 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=46.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (775)
..+-|.|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.+....|+.+|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 45678899999999998888777777876777765 3569999999999999999873
No 405
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=28.47 E-value=18 Score=30.87 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=3.6
Q ss_pred CCCcccccCCCCCcc
Q 004069 1 MPPRTVKRGAAGPRR 15 (775)
Q Consensus 1 ~p~~~~k~~~~a~~~ 15 (775)
||||.++....+++.
T Consensus 1 m~pk~~~~~k~~~~~ 15 (108)
T 3iz6_V 1 MAPKKDKAPPPSSKP 15 (108)
T ss_dssp --------CCCCCCC
T ss_pred CCCcccccCHHHHHH
Confidence 899977776655443
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.73 E-value=1.6e+02 Score=24.09 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=35.4
Q ss_pred eEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCCCCcccccCccccccHHHHHHHHh
Q 004069 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298 (775)
Q Consensus 223 v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~ 298 (775)
|..+.+.. ...||.||++.-.++...++....+. +=||++ .++.+++..++.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV----------------~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV----------------RGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE----------------EEECSS---CCCHHHHHHHHC
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc----------------eEeCCC---CCCHHHHHHHhC
Confidence 55555542 37999999999998888888765442 234443 567777777664
No 407
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=25.32 E-value=14 Score=41.99 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.7
Q ss_pred HHHhhccc
Q 004069 212 DLRKVFSQ 219 (775)
Q Consensus 212 ~L~~~f~~ 219 (775)
.|..+|..
T Consensus 385 ~Ll~~F~~ 392 (649)
T 3tj1_A 385 TLTTLFKT 392 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444544
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.35 E-value=1.7e+02 Score=22.53 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=34.0
Q ss_pred CCHHHHHHHHhccC-----CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceE
Q 004069 385 WDEDRVRELLKNYG-----EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (775)
Q Consensus 385 ~t~~~L~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (775)
++..+|..++..-+ .|-.|.|..+ |.||+-.... |..++..|++..+.|..+.+
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v 71 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKV 71 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCE
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEE
Confidence 55666666665443 4778888644 8999986644 66777889998888754433
No 409
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=23.26 E-value=16 Score=41.62 Aligned_cols=8 Identities=0% Similarity=-0.043 Sum_probs=3.2
Q ss_pred HhhccccC
Q 004069 214 RKVFSQVG 221 (775)
Q Consensus 214 ~~~f~~~G 221 (775)
..++.-|.
T Consensus 384 ~~Ll~~F~ 391 (649)
T 3tj1_A 384 NTLTTLFK 391 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.42 E-value=16 Score=33.37 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=18.5
Q ss_pred HHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeC
Q 004069 388 DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423 (775)
Q Consensus 388 ~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 423 (775)
++|.++|...|.|++.... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4566778888887766643 889999975
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=21.97 E-value=1.4e+02 Score=22.38 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=41.8
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (775)
.++.|.++....-...|...+.. --|..+.+-.. .+.+.|+|.+.+....||..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 56889999888778889999988 77877777543 56788998866667777764
Done!