BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004070
(775 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 1560 bits (4038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/775 (100%), Positives = 775/775 (100%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE 60
MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE
Sbjct: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE 60
Query: 61 DEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHE 120
DEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHE
Sbjct: 61 DEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHE 120
Query: 121 DVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAE 180
DVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAE
Sbjct: 121 DVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAE 180
Query: 181 EHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
EHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF
Sbjct: 181 EHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY 300
AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY
Sbjct: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY 300
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD
Sbjct: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV
Sbjct: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
Query: 421 TFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRAT 480
TFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRAT
Sbjct: 421 TFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRAT 480
Query: 481 RGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYD 540
RGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYD
Sbjct: 481 RGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYD 540
Query: 541 RRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMP 600
RRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMP
Sbjct: 541 RRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMP 600
Query: 601 RSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPG 660
RSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPG
Sbjct: 601 RSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPG 660
Query: 661 VRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGYGG 720
VRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGYGG
Sbjct: 661 VRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGYGG 720
Query: 721 SYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGVGGSSYMGSGGSGSYY 775
SYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGVGGSSYMGSGGSGSYY
Sbjct: 721 SYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGVGGSSYMGSGGSGSYY 775
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/797 (74%), Positives = 653/797 (81%), Gaps = 35/797 (4%)
Query: 1 MPPRTVKRGAA--GPRRTARATRGTAK---QQAEVAEETVKVEEVPVKEEEKAVVEDDN- 54
MPPRTVKRGAA GP+RTAR +RG AK QQ E AEE K EE P E ED
Sbjct: 1 MPPRTVKRGAAAAGPKRTARTSRGAAKGQSQQPEAAEEPPKAEESPAINE-NPFFEDKQF 59
Query: 55 --KPVV-----VEDE--PKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPE 105
KP+ +EDE KSD NGS + ED VK+SV+EYEKDERL+LDDNE EYEPE
Sbjct: 60 LEKPISEENRGLEDEIGSKSDANGSASLKKGED-VKDSVEEYEKDERLELDDNETEYEPE 118
Query: 106 EYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVE 165
EYGGVDYDDKE E ++VQEV + ++ EE++ + E++ + + EE E
Sbjct: 119 EYGGVDYDDKEIEQDEVQEVEVGYEVEEEHEEHLVEEEEEGDLVEEELEDVVEELEEGEE 178
Query: 166 ---NAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE 222
+AGEEA+ ++V+AEE +HHE+F+ERRKRKEFEVFVGGLDKD DDLRKVF++VGE
Sbjct: 179 DDEHAGEEADHAQVVNAEEEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKVFTRVGE 238
Query: 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLG 282
VTEVRLMMNPQTKKNKGFAFLRF+TVEQA++AVTELKNPVINGKQCGVTPSQDSDTLFLG
Sbjct: 239 VTEVRLMMNPQTKKNKGFAFLRFSTVEQAKKAVTELKNPVINGKQCGVTPSQDSDTLFLG 298
Query: 283 NICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342
NICKTWTKEALKEKLKHYGV+NVED+TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ
Sbjct: 299 NICKTWTKEALKEKLKHYGVENVEDVTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 358
Query: 343 KRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK 402
KRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLK +GEI K
Sbjct: 359 KRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKKFGEIEK 418
Query: 403 IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKG 462
IELARNMPSAKRKDFGFVTFD+HDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKG
Sbjct: 419 IELARNMPSAKRKDFGFVTFDSHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKG 478
Query: 463 KHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRR-PI 521
KHASR DFRS G GR RG W P RGI SR P SVKR V +RDRR P+
Sbjct: 479 KHASRADFRSWYG-GRTARGPWVRP---------VRGIASRAAPTSVKRHVGLRDRRPPV 528
Query: 522 MSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPD 581
MSM R RP+ PPP R+YDRRAP PSYPK LKR+YGRR+E+PPPRSRAPVDY SR V +
Sbjct: 529 MSMPVRGRPL-PPPNRTYDRRAPAPSYPKSSLKRDYGRREELPPPRSRAPVDYSSRSVAE 587
Query: 582 RR-PYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVS 640
RR YRD+Y+SRGSGY D+PR TSR +ARR YVDDGY QR ER PPSYREGRARDY+++S
Sbjct: 588 RRQSYRDDYSSRGSGYSDIPRGTSRSSARRAYVDDGYGQRLERHPPSYREGRARDYDSIS 647
Query: 641 GSKRPYSVVDDVPPRYAD--PGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSR 698
GSKRPYS +DDVPPRYAD G RHSRARLDY+LG A QYGDAYGDR+GRS++GYGGSR
Sbjct: 648 GSKRPYSAMDDVPPRYADGGAGTRHSRARLDYELGPSASQYGDAYGDRIGRSSVGYGGSR 707
Query: 699 SSISSQDSHGLYSSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGR 758
SS+SSQDSHGLY+SRQGMGYGGSY DVGGMY SSYG DYMPRGSDVG SYSS+Y R
Sbjct: 708 SSLSSQDSHGLYTSRQGMGYGGSYGANDVGGMYQSSYGGDYMPRGSDVGSRSYSSIYSSR 767
Query: 759 GVGGSSYMGSGGSGSYY 775
G+G S+YMGSGGSGSYY
Sbjct: 768 GMGSSNYMGSGGSGSYY 784
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/695 (78%), Positives = 598/695 (86%), Gaps = 14/695 (2%)
Query: 64 KSDVNGSVPATQKEDEVKESVDEYEK-----DERLDLDDNEPEYEPEEYGGVDYDDKETE 118
+S+ N P +KEDE+KESVDEYEK DERLDL+DNEPEYE EEYGGVDYD+KE E
Sbjct: 95 ESNTNRLSP-VKKEDEIKESVDEYEKNEYEKDERLDLEDNEPEYETEEYGGVDYDEKEIE 153
Query: 119 HEDVQEVGNEEDEHDDENVGEEEEDDLAEGE-MEDVPEEHGQGEEEVENAGEEAERPEMV 177
ED+ + G+E +E ++E EEED E MEDVPEE EE+ E+AGE E EMV
Sbjct: 154 QEDIPDGGDEVEEENEEGDVGEEEDGDVGEEGMEDVPEELEG-EEDDEHAGELQEHAEMV 212
Query: 178 DAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
DAE+ +HHE+F+ERRKRKEFEVFVGGLDKD DDLRKVFSQVGEVTEVRLMMNPQTKKN
Sbjct: 213 DAEDEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKN 272
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 297
KGFAFLRFATVEQA++AVTELKNPV+NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL
Sbjct: 273 KGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 332
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
KHYGV+NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV+FGVDR AKVS
Sbjct: 333 KHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRTAKVS 392
Query: 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417
FADSFIDPGDEIMAQVKTVF+DGLPASWDEDRVRELLK YGEI KIELARNMPSAKRKDF
Sbjct: 393 FADSFIDPGDEIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDF 452
Query: 418 GFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGR-GT 476
GFVTFDTHDAAVTCAKSINNAELGEG+NKAKVRARLSRPLQRGKGKH SRGDFR GR G
Sbjct: 453 GFVTFDTHDAAVTCAKSINNAELGEGENKAKVRARLSRPLQRGKGKHISRGDFRPGRGGP 512
Query: 477 GRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPP 536
R RGSW P+ RS PGR ARG+G RLPPA+VKRP+ RDRRP+M+M R R PPP
Sbjct: 513 VRGVRGSWARPALRSFPGRGARGLGPRLPPAAVKRPIGFRDRRPVMAMPPRGR-PLPPPS 571
Query: 537 RSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRP-YRDEYTSRGSG 595
RSYDRRAPVP+YPKP LKR+YGRR+EV P RSR VDYGSRV P+RRP YRD+Y +RGSG
Sbjct: 572 RSYDRRAPVPAYPKPNLKRDYGRREEV-PLRSRPAVDYGSRVAPERRPSYRDDYATRGSG 630
Query: 596 YPDMPRSTSRGAARRPYVDDGYAQRFER-PPPSYREGRARDYETVSGSKRPYSVVDDVPP 654
Y D+PR+TSR AARR Y DD Y QRFER PPPSYREGR RDY++++GSKRPY +DDVPP
Sbjct: 631 YSDIPRNTSRTAARRTYEDDAYGQRFERPPPPSYREGRPRDYDSIAGSKRPYGALDDVPP 690
Query: 655 RYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQ 714
RYAD VR SRARLDY++ GA QYGDAYGDR+GRSNLGYGGSRSS+SSQDSHGLYSSRQ
Sbjct: 691 RYADASVRQSRARLDYEMSAGASQYGDAYGDRLGRSNLGYGGSRSSMSSQDSHGLYSSRQ 750
Query: 715 -GMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDVGG 748
GGS+ G DVGGMYSSSYGSDYMPRG+DVGG
Sbjct: 751 GMGYGGGSFGGSDVGGMYSSSYGSDYMPRGADVGG 785
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/806 (65%), Positives = 599/806 (74%), Gaps = 83/806 (10%)
Query: 1 MPPRTVKRGAA--GPRRTARATRGTAKQQ-----AEVAEETVKV--------------EE 39
MPPRTVKRG+A G +R R TRGT K+Q EV EET KV EE
Sbjct: 1 MPPRTVKRGSASAGAKRGGRTTRGTPKKQDQPAEREVVEETAKVEEVSVVEVETKELREE 60
Query: 40 VPVKEEEKAVVED----DNKPVVVED---------------EPKSDVNGSVPATQKEDEV 80
V V +E+ VVED NKPVVVE+ E +SD SVP ++E+
Sbjct: 61 VAV-QEKSPVVEDKPVIQNKPVVVEEKQPIAVDVGEVESSREVRSDSKQSVPPKKEEEVK 119
Query: 81 KESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEE 140
E Y KDERLDL+DN+PE EP+E GG +YD+KE E EDVQEV + E E +D NVG+E
Sbjct: 120 DEE---YGKDERLDLEDNDPESEPDEDGGFEYDEKEIEQEDVQEVVDGEGEPED-NVGDE 175
Query: 141 EEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVF 200
E D+ E ++ED +E +GE++ + GE+ E MVDA+E +HHE+ +ERRKRKEFEVF
Sbjct: 176 E-GDMVEEDVEDA-QEDLEGEDDDQQGGEDHEHAGMVDADEDEHHEVVKERRKRKEFEVF 233
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VGGLDKDV +DL+KVFS VGEVTEVRLMMNPQTKKNKGFAFLRFATVE+A++AV+ELKN
Sbjct: 234 VGGLDKDVKEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKN 293
Query: 261 PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMN 320
PVINGKQCGVTPSQDSDTLFLGNICKTW K+ALKEKLKHYGVDNVEDLTLVEDSNNEG N
Sbjct: 294 PVINGKQCGVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSN 353
Query: 321 RGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDG 380
RGFAFLEFSSRSDAMDAFKRLQKRDV+FGVDRPAKVSFADSFIDPGDEIMAQVKTVFVD
Sbjct: 354 RGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDS 413
Query: 381 LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
LPASWDE+ VR LLK YGEI KIELARNMPSAKRKDFGFVTFDTHDAAV+CAKSINN+EL
Sbjct: 414 LPASWDEEFVRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSEL 473
Query: 441 GEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGI 500
GEGDNKAKVRARLSRPLQRGKGKHASR D+ GR TGR RGSW P+PRS+P R RG+
Sbjct: 474 GEGDNKAKVRARLSRPLQRGKGKHASRTDYWPGRTTGR-VRGSWTRPAPRSIPIRGVRGV 532
Query: 501 GSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRR 560
GS LPP SVKRP VRDRRP++++ R RP+ RSYDR PV SY K LKR+YGRR
Sbjct: 533 GSHLPPVSVKRPSGVRDRRPVIAVPPRGRPV-AAVARSYDRGPPVASYSKSSLKRDYGRR 591
Query: 561 DEVPPPRSRAPVDYGSRVVPDRRP-YRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQ 619
+E+ P RSR VDY SRVVP+R P YRD+Y SR + + D PR R A RR YVDDGY++
Sbjct: 592 EELHPSRSRMLVDYASRVVPERNPSYRDDYASRAAAFSDPPR---RDAPRRAYVDDGYSR 648
Query: 620 RFER-PPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQ 678
RFER PPPSYR+ RARDY+ + GSKRPYS + DVPP YAD GVR SR+RLDYD G GA Q
Sbjct: 649 RFERPPPPSYRDVRARDYDALIGSKRPYSSMSDVPPAYADTGVRQSRSRLDYDYGAGASQ 708
Query: 679 YGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGY-----GGSYSGGDVGGMYSS 733
YGDAY R+GRSN+G GY DVGGMYSS
Sbjct: 709 YGDAYDSRIGRSNIG-----------------------GYDSRSSISGSFSSDVGGMYSS 745
Query: 734 SYGSDYMPR-GSDVGGSSYSSMYPGR 758
SYG DYM R + G SSYSSMYPGR
Sbjct: 746 SYGGDYMTRGSNVGGSSSYSSMYPGR 771
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/806 (65%), Positives = 598/806 (74%), Gaps = 83/806 (10%)
Query: 1 MPPRTVKRGAA--GPRRTARATRGTAKQQ-----AEVAEETVKV--------------EE 39
MPPRTVKRG+A G +R R TRGT K+Q EV EET KV EE
Sbjct: 1 MPPRTVKRGSASAGAKRGGRTTRGTPKKQDQPAEREVVEETAKVEEVSVVEVETKELREE 60
Query: 40 VPVKEEEKAVVED----DNKPVVVED---------------EPKSDVNGSVPATQKEDEV 80
V V +E+ VVED NKPVVVE+ E +SD SVP ++E+
Sbjct: 61 VAV-QEKSPVVEDKPVIQNKPVVVEEKQPIAVDVGEVESSREVRSDSKQSVPPKKEEEVK 119
Query: 81 KESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEE 140
E Y KDERLDL+DN+PE EP+E GG +YD+KE E EDVQEV + E +D NVG+E
Sbjct: 120 DEE---YGKDERLDLEDNDPESEPDEDGGFEYDEKEIEQEDVQEVVDXGGEPED-NVGDE 175
Query: 141 EEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVF 200
E D+ E ++ED +E +GE++ + GE+ E MVDA+E +HHE+ +ERRKRKEFEVF
Sbjct: 176 E-GDMVEEDVEDA-QEDLEGEDDDQQGGEDHEHAGMVDADEDEHHEVVKERRKRKEFEVF 233
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VGGLDKDV +DL+KVFS VGEVTEVRLMMNPQTKKNKGFAFLRFATVE+A++AV+ELKN
Sbjct: 234 VGGLDKDVKEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKN 293
Query: 261 PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMN 320
PVINGKQCGVTPSQDSDTLFLGNICKTW K+ALKEKLKHYGVDNVEDLTLVEDSNNEG N
Sbjct: 294 PVINGKQCGVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSN 353
Query: 321 RGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDG 380
RGFAFLEFSSRSDAMDAFKRLQKRDV+FGVDRPAKVSFADSFIDPGDEIMAQVKTVFVD
Sbjct: 354 RGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDS 413
Query: 381 LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
LPASWDE+ VR LLK YGEI KIELARNMPSAKRKDFGFVTFDTHDAAV+CAKSINN+EL
Sbjct: 414 LPASWDEEFVRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSEL 473
Query: 441 GEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGI 500
GEGDNKAKVRARLSRPLQRGKGKHASR D+ GR TGR RGSW P+PRS+P R RG+
Sbjct: 474 GEGDNKAKVRARLSRPLQRGKGKHASRTDYWPGRTTGR-VRGSWTRPAPRSIPIRGVRGV 532
Query: 501 GSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRR 560
GS LPP SVKRP VRDRRP++++ R RP+ RSYDR PV SY K LKR+YGRR
Sbjct: 533 GSHLPPVSVKRPSGVRDRRPVIAVPPRGRPV-AAVARSYDRGPPVASYSKSSLKRDYGRR 591
Query: 561 DEVPPPRSRAPVDYGSRVVPDRRP-YRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQ 619
+E+ P RSR VDY SRVVP+R P YRD+Y SR + + D PR R A RR YVDDGY++
Sbjct: 592 EELHPSRSRMLVDYASRVVPERNPSYRDDYASRAAAFSDPPR---RDAPRRAYVDDGYSR 648
Query: 620 RFER-PPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQ 678
RFER PPPSYR+ RARDY+ + GSKRPYS + DVPP YAD GVR SR+RLDYD G GA Q
Sbjct: 649 RFERPPPPSYRDVRARDYDALIGSKRPYSSMSDVPPAYADTGVRQSRSRLDYDYGAGASQ 708
Query: 679 YGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGY-----GGSYSGGDVGGMYSS 733
YGDAY R+GRSN+G GY DVGGMYSS
Sbjct: 709 YGDAYDSRIGRSNIG-----------------------GYDSRSSISGSFSSDVGGMYSS 745
Query: 734 SYGSDYMPR-GSDVGGSSYSSMYPGR 758
SYG DYM R + G SSYSSMYPGR
Sbjct: 746 SYGGDYMTRGSNVGGSSSYSSMYPGR 771
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/790 (65%), Positives = 599/790 (75%), Gaps = 27/790 (3%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVED--DNKPVV 58
MPPR VKRGAA RA+RG++K E E E V EE VV+ + KPV
Sbjct: 1 MPPRIVKRGAA----AKRASRGSSKAAPENQPEPETAEVVVKNNEENPVVDAVVEEKPVD 56
Query: 59 VEDEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETE 118
VE E + NGS E+E+KES+DEYEKDE LD +DN PEYE EEYGGVDYD+KE E
Sbjct: 57 VEQEHEEVPNGSAKVENNEEEIKESIDEYEKDEHLDFEDNYPEYEAEEYGGVDYDEKEIE 116
Query: 119 HEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVD 178
++ QE G+E +E +E VGEEE D E +++ E+AGEE E +M D
Sbjct: 117 QDEGQEEGDEVEEDPEEIVGEEEGDTGDEEVEY---VYEEVEDDDDEHAGEEHEHAQMPD 173
Query: 179 AEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
E+ +H E+ +ERRKRKEFEVFVGGLDKD DL+KVF +VG VTEVRLM+NPQTK+NK
Sbjct: 174 VEQEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNK 233
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298
GFAFLRF TVEQAR+AV ELKNPVINGK+CGVTPSQDSDTL+LGNICKTW KEALKEKLK
Sbjct: 234 GFAFLRFETVEQARRAVVELKNPVINGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLK 293
Query: 299 HYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSF 358
HYGV++VEDLTL+ED NEGMNRGFAFLEFSSRSDA +A+KRLQKRDV FGVD+PAKVSF
Sbjct: 294 HYGVEDVEDLTLIEDDTNEGMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVDKPAKVSF 353
Query: 359 ADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFG 418
ADSFID GDEIMAQVKTVF+D LP SW+ED VR+LLK YGEI K+ELA++MP+A+RK++G
Sbjct: 354 ADSFIDLGDEIMAQVKTVFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYG 413
Query: 419 FVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSR----PLQRGKGKHASRGDFRSGR 474
FVTF TH AAV CA SI +A LGEGD KAKVRARLSR PLQRG+GK+ + GDFRSGR
Sbjct: 414 FVTFSTHVAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKYVNHGDFRSGR 473
Query: 475 GTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSMTARARPMPPP 534
+GR R S P+PRSLP RG+GSR+PP RP+ VR+RRP+ M RARP+ P
Sbjct: 474 NSGRLVRSSRSQPAPRSLPAHVVRGVGSRVPPV---RPISVRNRRPVTPMLVRARPV-AP 529
Query: 535 PPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGS 594
P RSYDRR P+YPK G+KR+Y RR ++PPPRSR DYGSRV R +Y +RGS
Sbjct: 530 PARSYDRRLAAPAYPKSGMKRDYSRRVDLPPPRSRVATDYGSRVASQRHSSYRDYPARGS 589
Query: 595 GYPDMP-RSTSRGAARRPYVDDGYAQRFERPPP-------SYREGRARDYETVSGSKRPY 646
YP++ RSTSRGA +R YVDDGY QRFER PP SY EGR RDY+++SGSKRPY
Sbjct: 590 DYPELHRRSTSRGAPKRGYVDDGYGQRFERAPPSPPPPHLSYHEGRPRDYDSLSGSKRPY 649
Query: 647 SVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDS 706
+ +DDVPPRY D G R SR+RLDYD GG A QYGDAYGDR+GRS+LGY GSR+SIS+QD
Sbjct: 650 TAIDDVPPRY-DTGARQSRSRLDYDYGGSASQYGDAYGDRLGRSSLGYSGSRNSISNQDL 708
Query: 707 HGLYSSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGVGGSS-Y 765
HG Y SRQGM YGG GG GGMYSSSYG DY RGSDVGG SYSSMY GRGVGGSS Y
Sbjct: 709 HGTYGSRQGMSYGGGSFGGSDGGMYSSSYGGDYASRGSDVGGRSYSSMYSGRGVGGSSNY 768
Query: 766 MGSGGSGSYY 775
MGSGGSGSYY
Sbjct: 769 MGSGGSGSYY 778
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/794 (65%), Positives = 593/794 (74%), Gaps = 56/794 (7%)
Query: 1 MPPRTVKRGAAGP---------RRTARATRGTAKQQAEVAEETVKVEE-------VPVKE 44
MPP+T KRG+A R T +A + +QQ E AEETVKVEE V +E
Sbjct: 1 MPPKTAKRGSASSASKRGGRGGRGTPKAAQN--QQQHETAEETVKVEEKQQPVVVVAAEE 58
Query: 45 EEKAVV--------EDDNKPVVVEDEPKSDVNGSVP---------------ATQKEDEVK 81
E++ VV E++ VV+ED+ D+N P E+EVK
Sbjct: 59 EQQKVVVEKEIPAVEENESAVVIEDK-AIDMNQMAPEAVEETSHAASGLSLVKNDEEEVK 117
Query: 82 ESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEE 141
ES+DEYEKDERLDL+DN+PEYEPEEYGGVDYD+KE E +D E E ++ E
Sbjct: 118 ESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIE-QDEGHEVGNEVEEEEAEDNVGE 176
Query: 142 EDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFV 201
E+ E + + +GEEE E+AGEE E P+ D EE +H E+ +ER+KRKEFEVFV
Sbjct: 177 EEGDTGEEEVEDVHDELEGEEEHEHAGEEREHPDFADVEEEEHREVVKERQKRKEFEVFV 236
Query: 202 GGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261
GGLDKD DLRK F +VG VTEVRLMMNPQTKKNKGFAFLRF TVEQA++AV ELKNP
Sbjct: 237 GGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNP 296
Query: 262 VINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
VINGKQCGVTPSQDSDTL+LGNICKTWTKEALKEKLKHYGV NVEDLTLVED+N+EG NR
Sbjct: 297 VINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNR 356
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
GFAFLEF SRS+AMDAFKRLQ+RDV+FGVD+PAKVSFADSFIDPGDEIMAQVKTVF+D L
Sbjct: 357 GFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDAL 416
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
P SWDED VR+LL+ YGEI KIELARNMP+A+RKD+GFVTF +HDAAV CA SI ELG
Sbjct: 417 PPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAVKCADSITGTELG 476
Query: 442 EGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIG 501
EGD KAKVRARLSRPLQRG+GKH SRGD+RS RG+G TR SW P+PRS P RS RG+G
Sbjct: 477 EGDKKAKVRARLSRPLQRGRGKHISRGDYRSSRGSGMMTRPSWSRPAPRSFPSRSVRGVG 536
Query: 502 SRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRD 561
SR PP RPV VRDRRP+MS+ AR+RP+ PPP RSYDRR P+YPK +KR+YGRR+
Sbjct: 537 SRAPPV---RPVSVRDRRPMMSIPARSRPV-PPPSRSYDRRPVAPAYPKSSMKRDYGRRE 592
Query: 562 EVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
++PPPRSR VDYGSRV +RR +Y +RG GY ++PRSTSR A RR YVDDGY QRF
Sbjct: 593 DIPPPRSRVAVDYGSRVASERRTSYRDYPARGPGYTELPRSTSRAAPRRGYVDDGYGQRF 652
Query: 622 ERPPP-------SYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGG 674
ER PP SYREGR RDY+ +SGSKR Y+ +DDVPPRYAD G R SRARLDYD GG
Sbjct: 653 ERAPPPPPPPHLSYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGG 712
Query: 675 GAPQYGDAYGDRM-GRSNLGYGGSRSSISSQDSHGLYSSRQ-GMGYGGSYSGGDVGGMYS 732
A QYGDAYGDR+ S GGSRSSISSQDSHGLYSSRQ GGS+ GDVGGMYS
Sbjct: 713 SASQYGDAYGDRLGRSSMGYGGGSRSSISSQDSHGLYSSRQGMSYGGGSFGSGDVGGMYS 772
Query: 733 SSYGSDYMPRGSDV 746
SSYG DY+ RGSDV
Sbjct: 773 SSYGGDYISRGSDV 786
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/786 (63%), Positives = 574/786 (73%), Gaps = 73/786 (9%)
Query: 1 MPPRTVKRGAAGP--RRTARATRGTAKQ-------QAEVAEETVKVEEVP-----VKEEE 46
MPP+T KRG+AG +R R +RGTAK Q+E+ EE +EE + EE
Sbjct: 1 MPPKTPKRGSAGSGSKRGGRLSRGTAKSAQNQQQQQSELVEEKTVIEEEIKVEENLVVEE 60
Query: 47 KAVVEDDNKPVVVEDEPKSDVNGSVP--------ATQKEDEVKESVDEYEKDERLDLDDN 98
K VVE+DN VVED+ D+N P A + E+EVKES+DEYE+DERLDL+DN
Sbjct: 61 KPVVEEDNP--VVEDK-AIDMNQIAPEAVEDANSAKKDEEEVKESIDEYERDERLDLEDN 117
Query: 99 EPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHG 158
+PEYEPEEYGGVDYD+KE E E+ G E D++ E E+V EE
Sbjct: 118 DPEYEPEEYGGVDYDEKEIEQEE----------------GHEVGDEVEEEPEENVVEEGD 161
Query: 159 QGEEEVENAGEEA---------------ERPEMVDAEEHDHHEMFQERRKRKEFEVFVGG 203
GEEEVE+ +E ER EM D +E +H E+ +ERRKRKEFEVFVGG
Sbjct: 162 SGEEEVEDGHDEIEGEEDDEHADEEHDRERAEMADVDEEEHREVVKERRKRKEFEVFVGG 221
Query: 204 LDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263
LDKD DDLRKVFS+VG VTEVRLMMNPQTKKNKGFAFLRF VEQA++AV ELKNPVI
Sbjct: 222 LDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVI 281
Query: 264 NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
NGKQCGVTPSQDSDTL+LGNICKTWTKEALKEKLKHYGV NVED+TLVEDSN++G NRGF
Sbjct: 282 NGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGF 341
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
AFLEFSSRSDAMDAFKRLQKRDV FGVD+PAKVSFADSFIDPGDEIM+QVKTVF+D LP
Sbjct: 342 AFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPP 401
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
SWDED VR LLK YGE+ KIELARNMP+A+RKD+GFVTF +HDAA+ CA SI ELGEG
Sbjct: 402 SWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEG 461
Query: 444 DNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSW-GLPSPRSLPGRSARGIGS 502
D KAKVRARLSRPLQRG+GKH RGD+R RG+ +R SW P+PRS R RGIGS
Sbjct: 462 DKKAKVRARLSRPLQRGRGKHVGRGDYRPSRGSAIMSRPSWSSRPAPRSFSSRGVRGIGS 521
Query: 503 RLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDE 562
R PP R + RDRRP+MS+ R+RP+ PPP RSYDRR +Y K +KR+YGRRD+
Sbjct: 522 RAPPI---RSISARDRRPVMSIPVRSRPL-PPPARSYDRRPADAAYSKSSVKRDYGRRDD 577
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFE 622
+PPPRSR VDYGSR+ +RRP +Y RGS Y D PRST+R A RR YVDDGY+QR+E
Sbjct: 578 LPPPRSRVAVDYGSRMTSERRPTYRDYPPRGSDYSDPPRSTARAAPRRGYVDDGYSQRYE 637
Query: 623 RPP-------PSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGG 675
RPP PSYREGR RDY+++SGSKR Y+ VDDVPPRYAD G R SRARL+YD GG
Sbjct: 638 RPPPPPPPSHPSYREGRPRDYDSLSGSKRSYAAVDDVPPRYADTGARQSRARLEYDYGGS 697
Query: 676 APQYGDAYGDRM-GRSNLGYGGSRSSISSQDSHGLYSSRQGMGYGGSYSGGDVGGMYSSS 734
A QYGDAYGDR+ S GSRSSIS QDSHG+YSSRQGM YG GG++ +YS
Sbjct: 698 ASQYGDAYGDRVGRSSLGYGSGSRSSISGQDSHGVYSSRQGMSYG----GGELSCIYSDL 753
Query: 735 YGSDYM 740
S M
Sbjct: 754 LFSALM 759
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/678 (69%), Positives = 534/678 (78%), Gaps = 18/678 (2%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
E+EVKES+DEYEKDERLDL+DN+PEYEPEEYGGVDYD+KE E ++ E ++ E
Sbjct: 167 EEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKELEQDE-----GHEVGNEVEE 221
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
E+ E+ E+ E E E E P+ D EE +H E+ +ERRKRKE
Sbjct: 222 EVAEDNVGEEGDTGEEEVEDVHDELEGEEEHEHEHEHPDFADVEEEEHREVVKERRKRKE 281
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
FEVFVGGLDKD DLRKVF +VG VTEVRLMMNPQTKKNKGFAFLRF TVEQA++AV
Sbjct: 282 FEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVA 341
Query: 257 ELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
ELKNPVINGKQCGVTPSQDSDTL+LGNICKTWTKEALKEKLKHYGV NVEDLTLVED+N+
Sbjct: 342 ELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTND 401
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
EG NRGFAFLEF SRS+AMDAFKRLQ+RDV+FGVD+ AKVSFADSFIDPGDEIMAQVKTV
Sbjct: 402 EGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKLAKVSFADSFIDPGDEIMAQVKTV 461
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
F+D LP SWDED VR+LL+ YGEI KIELARNMP+A+RKD+GFVTF THDAAV CA SI
Sbjct: 462 FIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSIT 521
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRS 496
ELGEG KAKVRARLSRPLQRG+GKH+SRGD+RS RG+G TR SWG P+P S P RS
Sbjct: 522 GTELGEGHKKAKVRARLSRPLQRGRGKHSSRGDYRSSRGSGMMTRPSWGRPAPHSFPSRS 581
Query: 497 ARGIGSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKRE 556
RG+GSR PP R V VRDRRP+MS+ AR+RP+ PPP RSYDRR P+YPK +KR+
Sbjct: 582 VRGVGSRTPPV---RSVSVRDRRPMMSIPARSRPV-PPPSRSYDRRPVAPAYPKSSMKRD 637
Query: 557 YGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDG 616
YGRR+++PPPRSR VDYGSRV RRP +Y +RG GY ++PRSTSR A RR YVDDG
Sbjct: 638 YGRREDIPPPRSRVAVDYGSRVASVRRPSYRDYPARGPGYTELPRSTSRAAPRRGYVDDG 697
Query: 617 YAQRFERPPP-------SYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLD 669
Y QRFER PP SYREGR RDY+ +SGSKRPY+ +DD+PPRYAD G R SRARLD
Sbjct: 698 YGQRFERAPPPPPPPHLSYREGRPRDYDALSGSKRPYAAIDDLPPRYADTGARQSRARLD 757
Query: 670 YDLGGGAPQYGDAYGDRM-GRSNLGYGGSRSSISSQDSHGLYSSRQ-GMGYGGSYSGGDV 727
YD G A QYGDAYGDR+ S GGSRSSISSQDSHG+YSSRQ GGS+ GDV
Sbjct: 758 YDYGDSASQYGDAYGDRLGRSSVGYGGGSRSSISSQDSHGMYSSRQGMSYGGGSFGSGDV 817
Query: 728 GGMYSSSYGSDYMPRGSD 745
GGMYSSSYG DY+ RGSD
Sbjct: 818 GGMYSSSYGGDYISRGSD 835
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/606 (70%), Positives = 487/606 (80%), Gaps = 21/606 (3%)
Query: 169 EEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRL 228
E A++P DAEE +H E+ +ERRKRKEFEVFVGGLDKD DL+KVF +VG VTEVRL
Sbjct: 173 EHAQKP---DAEEEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGVVTEVRL 229
Query: 229 MMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTW 288
M+NPQTK+NKGFAFLRF TVEQAR+AV ELKNPVINGKQCGVTPSQDSDTL+LGNICKTW
Sbjct: 230 MINPQTKRNKGFAFLRFETVEQARRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTW 289
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348
KEALKEKLKHYGV+NVEDLTL+ED NEGMNRGFAFLEFSSRSDA +A++RLQKRDV F
Sbjct: 290 KKEALKEKLKHYGVENVEDLTLIEDGTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVAF 349
Query: 349 GVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN 408
GVD+PAKVSFADSFID GDEIMAQVKTVFVD LP SWDE VR+LLK YGEI KIELA++
Sbjct: 350 GVDKPAKVSFADSFIDLGDEIMAQVKTVFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKD 409
Query: 409 MPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSR----PLQRGKGKH 464
MP+A+RK++GFVTF TH AAV CA SI +A LGEGD KAKVRARLSR PLQRG+GKH
Sbjct: 410 MPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKH 469
Query: 465 ASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSM 524
+ GDFRSGR +GR R S P+PRSLP R RG+GSR+PP RP+ VR RRP+ SM
Sbjct: 470 VNHGDFRSGRNSGRLVRSSRSRPAPRSLPARVVRGVGSRVPPV---RPISVRSRRPVTSM 526
Query: 525 TARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRP 584
R+RP+ PP RSYDRR P+YPK G+KR+Y RR +PPPR+R DYGSR+ R
Sbjct: 527 LERSRPV-APPARSYDRRLAAPAYPKSGMKRDYRRRVNLPPPRNRVAADYGSRLASQRHT 585
Query: 585 YRDEYTSRGSGYPDMPRSTSRGAA-RRPYVDDGYAQRFERPPP--------SYREGRARD 635
+Y +RGS YP++ RSTSRG+A +R YVDDG+ QRFER PP SYREGR RD
Sbjct: 586 SHRDYPARGSNYPELHRSTSRGSAPKRGYVDDGHGQRFERAPPPPPPPPHLSYREGRPRD 645
Query: 636 YETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYG 695
Y+T+SGSKRPY+ +DDVPPRY D R SR+RL+YD GG A QYGDAYGDR+GRS+LGY
Sbjct: 646 YDTLSGSKRPYTDIDDVPPRY-DTSARQSRSRLNYDYGGSASQYGDAYGDRLGRSSLGYS 704
Query: 696 GSRSSISSQDSHGLYSSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMY 755
GSR+SISSQD HG Y SRQGM YGG GG GGMYSSSYG DY+ RGSDVGG SYSSMY
Sbjct: 705 GSRNSISSQDLHGTYGSRQGMSYGGGSFGGSDGGMYSSSYGGDYVSRGSDVGGRSYSSMY 764
Query: 756 PGRGVG 761
GRGVG
Sbjct: 765 SGRGVG 770
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/780 (58%), Positives = 563/780 (72%), Gaps = 44/780 (5%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVP---------VKEEEKAVVE 51
MPP+ VKRG A R Q V EE+V + E+ V E VE
Sbjct: 1 MPPKVVKRGGAARRGGRLTRSALKAQSPLVNEESVDIGEISGSDALEAKEVTPEVDETVE 60
Query: 52 DDN-----KPVVVEDEPKSDVNG-SVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPE 105
++N KP+ D+ ++ N + ++KE EVK+SVD++ KDERLDLDDNEPE+E E
Sbjct: 61 EENPLDGPKPLDSIDDSEAAANPVDIVLSKKETEVKDSVDDFGKDERLDLDDNEPEFEAE 120
Query: 106 EYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVE 165
EYGG +++++E ED + V E +E ++E EEE + A+ E+ E + E++ E
Sbjct: 121 EYGGEEFEERELGQEDNELVNEEGEELEEEIEVEEEAGEFAD-EI-GDDPEELESEDDDE 178
Query: 166 NAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
+A E+ + E VD EE +HH++ ERRKRKEFE+FVG LDK +DL+KVF VGEVTE
Sbjct: 179 HANEDVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGATEEDLKKVFGHVGEVTE 238
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNIC 285
+R++ NPQTKK+KG AFLRFAT+EQA++AV ELK+P+INGK+CGVT SQD+DTLF+GNIC
Sbjct: 239 IRILKNPQTKKSKGSAFLRFATMEQAKRAVKELKSPMINGKKCGVTASQDNDTLFIGNIC 298
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
KTWT EAL+EKLKHYGV+N++D+TLVEDSNN MNRG+AFLEFSSRSDAMDA KRL K+D
Sbjct: 299 KTWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKD 358
Query: 346 VLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405
V+FGV++PAKVSF DSF+DP DEIMAQVKT+F+DGL SW+E+RVR+LLK YG++ K+EL
Sbjct: 359 VMFGVEKPAKVSFTDSFLDPEDEIMAQVKTIFIDGLLPSWNEERVRDLLKRYGKLEKVEL 418
Query: 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR-GKGKH 464
ARNMPSA+RKDFGFVTFDTH+AAVTCAK INN+ELGEG++KAKVRARLSRPLQ+ GKG+
Sbjct: 419 ARNMPSARRKDFGFVTFDTHEAAVTCAKFINNSELGEGEDKAKVRARLSRPLQKAGKGRQ 478
Query: 465 ASRGDFRSGRGTGRATRGSWGLPSPRSLP-GRSARGIGSRLPPASVKRPVPVR------- 516
+SR D RS GTGR+ R S+ PRSL RSARG GSR P +S KR R
Sbjct: 479 SSRSDQRSRHGTGRSGRISFARLPPRSLASSRSARGAGSRAPSSSAKRVSGSRGRRPRPP 538
Query: 517 ------------DRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVP 564
R PPP RSYDRR PVP YPK LKR+Y RRD++P
Sbjct: 539 LPPPARARPLPPPARARPLPPPARARPLPPPARSYDRRPPVPLYPKASLKRDYDRRDDLP 598
Query: 565 PPRSRAPVDYGSRVVPDRR-PYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFER 623
PPRSR V Y SR+ P+R YRD+Y RGSGY D+PRS+SR RRP+VDD Y+ RFER
Sbjct: 599 PPRSRPAVSYSSRLSPERHLSYRDDYPPRGSGYSDLPRSSSRSEMRRPFVDDPYSPRFER 658
Query: 624 PPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAY 683
PPSY EGR R YE + GSKRPY+ +DD+PPRYAD VRHSR RLDYD+G QYG++Y
Sbjct: 659 -PPSYSEGRPRAYEPLPGSKRPYAALDDIPPRYADVDVRHSRPRLDYDVGPS--QYGESY 715
Query: 684 GDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGY-GGSYSGGDVGGMYSSSYGSDYMPR 742
GDR+ RS+LGYG SR+S+SS DS G YSSRQGM Y GGSYSG DVGGMYSSSYG D +PR
Sbjct: 716 GDRIPRSSLGYGSSRNSMSSHDSRGPYSSRQGMDYGGGSYSGSDVGGMYSSSYGGD-LPR 774
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/789 (56%), Positives = 545/789 (69%), Gaps = 37/789 (4%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE 60
MPP+ VKRG+A A + + + + E P+K E V+D V E
Sbjct: 1 MPPKVVKRGSA-------AKKAKVSSKTSIQNPPQEPEPKPIKNHEDNHVDDS---AVEE 50
Query: 61 DEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEY-GGVDYDDKETEH 119
+ ++ NG +EVKES+DEYEKDE LD +DN EY+PEEY G DYD++ E
Sbjct: 51 NSVETVPNGVAMVENNGEEVKESIDEYEKDEHLDFEDNYHEYDPEEYVGDDDYDERGIEQ 110
Query: 120 EDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEV------ENAGEEAER 173
++ QE G+E +E +ENV EEE D E E ++ E+A EE
Sbjct: 111 DEGQEAGDEVEEEPEENVDEEEGDTGDEEVEEVEYVYEEVEGDDDDVAGDDEHASEENVH 170
Query: 174 PEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ 233
+ D +E + E+ +E +K+KE EVFVGGLDK+ DLRKVFS+VGE+TEVR+ +NPQ
Sbjct: 171 EHLADVKEEEQVEVIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQ 230
Query: 234 TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT--PSQDSDTLFLGNICKTWTKE 291
TK+NKGFA LRF TVE ++A+ ELKNPVINGKQCG+T QDSDTL+L NICK+W KE
Sbjct: 231 TKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKE 290
Query: 292 ALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351
ALKEKLKHYGV++ +DLTL+ED NNEG N G AFLEFSS SD+ DA+KRLQK DV+FGVD
Sbjct: 291 ALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD 350
Query: 352 RPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+PA+VSFA+SFID GD+IMAQVKTVF+D LP SWDED VR LLK YG + K+ELA+NMP
Sbjct: 351 KPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPG 410
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFR 471
A+RK++GFVTF TH AAV CA+SI +A LGEG+ KAKVRARLSRPL + +GKH D
Sbjct: 411 ARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKVRGKHVPHRDI- 469
Query: 472 SGRGTGRATRGSWGLPSPRSLPGRSA------RGIGSRLPPASVKRPVPVRDRRPIMSMT 525
SGR GR R S P+PRS P + R +GSR+PPA RP R+RRP+ S+
Sbjct: 470 SGRKIGRLERPSRSRPAPRSRPAPQSRPAHVFRRLGSRIPPA---RPSSARNRRPVTSIP 526
Query: 526 ARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPY 585
RARP PP RSY R A +YPK +KR+YGR ++PPPRSR DYGS+VV R P
Sbjct: 527 VRARPA-SPPARSYRRLA--AAYPKSSMKRDYGRPVDLPPPRSRVSADYGSQVVSQRGPS 583
Query: 586 RDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERPPP-----SYREGRARDYETVS 640
+Y +R SGYPD+ R TSR A RR Y+DDGY +R ERPP SYREGR RDY+ +S
Sbjct: 584 YRDYPARDSGYPDLHRDTSRTAPRRGYLDDGYDRRLERPPSPSPRLSYREGRPRDYDALS 643
Query: 641 GSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSS 700
GSKRPY+ +DD+ PRYAD G R SR+RLDYD GG A +Y +AYGDR+ RS+LGY GSRSS
Sbjct: 644 GSKRPYAAIDDISPRYADAGARQSRSRLDYDYGGSASRYREAYGDRLERSSLGYSGSRSS 703
Query: 701 ISSQDSHGLYSSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGV 760
+S+Q+SHG YSSRQ YG GG GG+YSSSYG DY+ RGSDVGGSSYSSMY RG+
Sbjct: 704 LSNQNSHGAYSSRQDPSYGRGSLGGSDGGIYSSSYGGDYLSRGSDVGGSSYSSMYSSRGM 763
Query: 761 GGSSYMGSG 769
GSS SG
Sbjct: 764 NGSSSYMSG 772
>gi|30689808|ref|NP_850422.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20147226|gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|23308467|gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|330255364|gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 809
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/786 (58%), Positives = 566/786 (72%), Gaps = 52/786 (6%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAE----ETVKVEEVP---------VKEEEK 47
MPP+ VKRG A RR R TR K Q E E+V + E+ V E
Sbjct: 1 MPPKVVKRGGAA-RRGGRLTRSALKAQNPHVESSHDESVNIGELSGSDALEAKEVTPEVD 59
Query: 48 AVVEDDNKPVVV--------EDEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNE 99
VE++N P+ V + E ++ + VP ++KE EV+ESVD++ KDERLDLDDNE
Sbjct: 60 KTVEEEN-PLDVPKSSDSIDDSEAAANPHVDVP-SKKETEVEESVDDFGKDERLDLDDNE 117
Query: 100 PEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQ 159
PEYE EEYGG +++++E ED + V E +E ++E EEE + A+ E+ D E+
Sbjct: 118 PEYEAEEYGGEEFEERELGQEDHELVNEEGEELEEEIEVEEEAGEFAD-EIGDGAEDLDS 176
Query: 160 GEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQ 219
+++ ++A EE + E VD EE +HH++ ERRKRKEFE+FVG LDK +DL+KVF
Sbjct: 177 EDDDDDHAIEEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGH 236
Query: 220 VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTL 279
VGEVTEVR++ NPQTKK+KG AFLRFATVEQA++AV ELK+P+INGK+CGVT SQD+DTL
Sbjct: 237 VGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTL 296
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
F+GNICK WT EAL+EKLKHYGV+N++D+TLVEDSNN MNRG+AFLEFSSRSDAMDA K
Sbjct: 297 FVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHK 356
Query: 340 RLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGE 399
RL K+DV+FGV++PAKVSF DSF+D DEIMAQVKT+F+DGL SW+E+RVR+LLK YG+
Sbjct: 357 RLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGK 416
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
+ K+ELARNMPSA+RKDFGFVTFDTH+AAV+CAK INN+ELGEG++KAKVRARLSRPLQ+
Sbjct: 417 LEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPLQK 476
Query: 460 -GKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLP-GRSARGIGSRLPPASVKRPVPVR- 516
GKG+ +SR D RS G GR+ R S+ PRSL RSARG GSR P +S KR R
Sbjct: 477 AGKGRQSSRSDQRSRHGAGRSGRSSFARLPPRSLASSRSARGAGSRAPSSSAKRASGSRG 536
Query: 517 ------------------DRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYG 558
R PPP RSYDRR PVP YPK LKR+Y
Sbjct: 537 RRPRPPLPPPARARPLPPPARARPMPPPARARPLPPPARSYDRRPPVPLYPKASLKRDYD 596
Query: 559 RRDEVPPPRSRAPVDYGSRVVPDRR-PYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGY 617
RRDE+PPPRSR V Y SR+ P+R YRD+Y RGSGY D+PRS+SR RRP+VDD Y
Sbjct: 597 RRDELPPPRSRPAVSYSSRLSPERHLSYRDDYPPRGSGYSDLPRSSSRSEIRRPFVDDLY 656
Query: 618 AQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAP 677
+ RFER PPSY EGR R YE + GSKRPY+ +DD+PPRYAD VRHSR RLDYD+G
Sbjct: 657 SPRFER-PPSYSEGRPRAYEPLPGSKRPYAALDDLPPRYADVDVRHSRPRLDYDVGPS-- 713
Query: 678 QYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGY-GGSYSGGDVGGMYSSSYG 736
QYG++YGDR+ RS+LGYG SR+S+S+ DS G YSSRQGM Y GGSYSG DVGGMYSSSYG
Sbjct: 714 QYGESYGDRIPRSSLGYGSSRNSMSNHDSRGPYSSRQGMDYGGGSYSGSDVGGMYSSSYG 773
Query: 737 SDYMPR 742
D +PR
Sbjct: 774 GD-LPR 778
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/648 (62%), Positives = 479/648 (73%), Gaps = 21/648 (3%)
Query: 108 GGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENA 167
VDYD+K+ E E++++D + E +D+ E E + V EE G++
Sbjct: 109 AAVDYDEKDLEQY--------EEQYEDGDEVVEYTEDVIEEETDMVDEELDGGDDGEGEG 160
Query: 168 GEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVR 227
E AE VD E+ +HHEM +E RKRKEFEVFVGGLDKD DLRKVF +VGE+TEVR
Sbjct: 161 YENAEEEHNVDVEDEEHHEMVKEHRKRKEFEVFVGGLDKDATESDLRKVFGEVGEITEVR 220
Query: 228 LMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKT 287
LMMNP TKKNKGFAFLR+ATVEQAR+AV+ELKNP + GKQCGV PS D+DTLF+GNICKT
Sbjct: 221 LMMNPVTKKNKGFAFLRYATVEQARRAVSELKNPSVRGKQCGVAPSHDNDTLFVGNICKT 280
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347
WTKE LKEKLK YGV+N +DL LVEDSNN GMNRG+A LEFS+R +AMDAF+RLQKRDV+
Sbjct: 281 WTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVV 340
Query: 348 FGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
FGVDR AKVSFADS+ + DEIMAQV+TVF+DGLP SWDEDRV++ LK YG I K+ELAR
Sbjct: 341 FGVDRSAKVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELAR 400
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR-GKGKHAS 466
NMP+AKRKDFGFVTFDTHD AV CA I N+E+GEGD+KAKVRARLSRPLQR + KH
Sbjct: 401 NMPAAKRKDFGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARLSRPLQRPPRMKHGL 460
Query: 467 RGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIG-SRLPPAS----VKRPVPVRDRRPI 521
RG+FR G+G R R ++ P P P SRLPP +KRPV +RDRRP+
Sbjct: 461 RGNFRVGQGAPRGGRFAYDRPPPLRRPPPRLLRPDVSRLPPPVRSRPLKRPVDIRDRRPV 520
Query: 522 MSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPV-DYGSRVVP 580
MS+ R R + PPP RSYDRR P P YPK +REYGRRDE+PPPRSRA DY SRV
Sbjct: 521 MSIPDRVRRL-PPPERSYDRRPPAPVYPKRSPRREYGRRDELPPPRSRATFGDYSSRVPV 579
Query: 581 DRRPYRDEYTSRGSGYPDM-PRSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETV 639
DRRPYRD+Y+ RGS Y D+ PRS R + RR Y+DDGY + +RP P+YREGR RDY+T+
Sbjct: 580 DRRPYRDDYSPRGSAYSDLGPRSAPRLSDRRAYIDDGYGGKIDRPLPTYREGRGRDYDTM 639
Query: 640 SGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRS 699
SGSKR Y+ +DDVPPRY D VR S+ARLDYD+GG + +Y D Y +R+GRS+ GY G R
Sbjct: 640 SGSKRSYAEMDDVPPRYHDISVRQSKARLDYDVGGSSARYADTYSERLGRSHAGYSGGR- 698
Query: 700 SISSQDSHGLYSS-RQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDV 746
S+S D +YSS R GM YGGS S D GGMYSS++ YM RGSDV
Sbjct: 699 SVSGHDP--VYSSGRHGMSYGGSASSNDAGGMYSSNFSGSYMSRGSDV 744
>gi|110740397|dbj|BAF02093.1| hypothetical protein [Arabidopsis thaliana]
Length = 809
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/786 (58%), Positives = 565/786 (71%), Gaps = 52/786 (6%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAE----ETVKVEEVP---------VKEEEK 47
MPP+ VKRG A RR R TR K Q E E+V + E+ V E
Sbjct: 1 MPPKVVKRGGAA-RRGGRLTRSALKAQNPHVESSHDESVNIGELSGSDALEAKEVTPEVD 59
Query: 48 AVVEDDNKPVVV--------EDEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNE 99
VE++N P+ V + E ++ + VP ++KE EV+ESVD++ KDERLDLDDNE
Sbjct: 60 KTVEEEN-PLDVPKSSDSIDDSEAAANPHVDVP-SKKETEVEESVDDFGKDERLDLDDNE 117
Query: 100 PEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQ 159
PEYE EEYGG +++++E ED + V E +E ++E EEE + A+ E+ D E+
Sbjct: 118 PEYEAEEYGGEEFEERELGQEDHELVNEEGEELEEEIEVEEEAGEFAD-EIGDGAEDLDS 176
Query: 160 GEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQ 219
+++ ++A EE + E VD EE +HH++ ERRKRKEFE+FVG LDK +DL+KVF
Sbjct: 177 EDDDDDHAIEEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGH 236
Query: 220 VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTL 279
VGEVTEVR++ NPQTKK+KG AFLRFATVEQA++AV ELK+P+INGK+CGVT SQD+DTL
Sbjct: 237 VGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTL 296
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
F+GNICK WT EAL+EKLKHYGV+N++D+TLVEDSNN MNRG+AFLEFSSRSDAMDA K
Sbjct: 297 FVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHK 356
Query: 340 RLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGE 399
RL K+DV+FGV++PAKVSF DSF+D DEIMAQVKT+F+DGL SW+E+RVR+LLK YG+
Sbjct: 357 RLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGK 416
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
+ K+ELARNMPSA+RKDFGFVTFDTH+AAV+CAK INN+ELGEG++KAKVRARLSRPLQ+
Sbjct: 417 LEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPLQK 476
Query: 460 -GKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLP-GRSARGIGSRLPPASVKRPVPVR- 516
GKG+ +SR D RS G GR+ R S+ PRSL RSARG GSR P +S KR R
Sbjct: 477 AGKGRQSSRSDQRSRHGAGRSGRSSFARLPPRSLASSRSARGAGSRAPSSSAKRASGSRG 536
Query: 517 ------------------DRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYG 558
R PPP RSYDRR PVP YPK LKR+Y
Sbjct: 537 RRPRPPLPPPARARPLPPPARARPMPPPARARPLPPPARSYDRRPPVPLYPKASLKRDYD 596
Query: 559 RRDEVPPPRSRAPVDYGSRVVPDRR-PYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGY 617
RRDE+PPPRSR V Y SR+ P+R YRD+Y RGSGY D+PRS+SR RRP+VDD Y
Sbjct: 597 RRDELPPPRSRPAVSYSSRLSPERHLSYRDDYPPRGSGYSDLPRSSSRSEIRRPFVDDLY 656
Query: 618 AQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAP 677
+ RFER PPSY EGR R YE + GSKRPY+ +DD PPRYAD VRHSR RLDYD+G
Sbjct: 657 SPRFER-PPSYSEGRPRAYEPLPGSKRPYAALDDFPPRYADVDVRHSRPRLDYDVGPS-- 713
Query: 678 QYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGY-GGSYSGGDVGGMYSSSYG 736
QYG++YGDR+ RS+LGYG SR+S+S+ DS G YSSRQGM Y GGSYSG DVGGMYSSSYG
Sbjct: 714 QYGESYGDRIPRSSLGYGSSRNSMSNHDSRGPYSSRQGMDYGGGSYSGSDVGGMYSSSYG 773
Query: 737 SDYMPR 742
D +PR
Sbjct: 774 GD-LPR 778
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/780 (56%), Positives = 540/780 (69%), Gaps = 37/780 (4%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE 60
MPP+ VKRG+A A + + + + E P+K E V+D V E
Sbjct: 1 MPPKVVKRGSA-------AKKAKVSSKTSIQNPPQEPEPKPIKNHEDNHVDDS---AVEE 50
Query: 61 DEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEY-GGVDYDDKETEH 119
+ ++ NG +EVKES+DEYEKDE LD +DN EY+PEEY G DYD++ E
Sbjct: 51 NSVETVPNGVAMVENNGEEVKESIDEYEKDEHLDFEDNYHEYDPEEYVGDDDYDERGIEQ 110
Query: 120 EDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEV------ENAGEEAER 173
++ QE G+E +E +ENV EEE D E E ++ E+A EE
Sbjct: 111 DEGQEAGDEVEEEPEENVDEEEGDTGDEEVEEVEYVYEEVEGDDDDVAGDDEHASEENVH 170
Query: 174 PEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ 233
+ D +E + E+ +E +K+KE EVFVGGLDK+ DLRKVFS+VGE+TEVR+ +NPQ
Sbjct: 171 EHLADVKEEEQVEVIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQ 230
Query: 234 TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT--PSQDSDTLFLGNICKTWTKE 291
TK+NKGFA LRF TVE ++A+ ELKNPVINGKQCG+T QDSDTL+L NICK+W KE
Sbjct: 231 TKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKE 290
Query: 292 ALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351
ALKEKLKHYGV++ +DLTL+ED NNEG N G AFLEFSS SD+ DA+KRLQK DV+FGVD
Sbjct: 291 ALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD 350
Query: 352 RPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+PA+VSFA+SFID GD+IMAQVKTVF+D LP SWDED VR LLK YG + K+ELA+NMP
Sbjct: 351 KPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPG 410
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFR 471
A+RK++GFVTF TH AAV CA+SI +A LGEG+ KAKVRARLSRPL + +GKH D
Sbjct: 411 ARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKVRGKHVPHRDI- 469
Query: 472 SGRGTGRATRGSWGLPSPRSLPGRSA------RGIGSRLPPASVKRPVPVRDRRPIMSMT 525
SGR GR R S P+PRS P + R +GSR+PPA RP R+RRP+ S+
Sbjct: 470 SGRKIGRLERPSRSRPAPRSRPAPQSRPAHVFRRLGSRIPPA---RPSSARNRRPVTSIP 526
Query: 526 ARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPY 585
RARP PP RSY R A +YPK +KR+YGR ++PPPRSR DYGS+VV R P
Sbjct: 527 VRARPA-SPPARSYRRLA--AAYPKSSMKRDYGRPVDLPPPRSRVSADYGSQVVSQRGPS 583
Query: 586 RDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERPPP-----SYREGRARDYETVS 640
+Y +R SGYPD+ R TSR A RR Y+DDGY +R ERPP SYREGR RDY+ +S
Sbjct: 584 YRDYPARDSGYPDLHRDTSRTAPRRGYLDDGYDRRLERPPSPSPRLSYREGRPRDYDALS 643
Query: 641 GSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSS 700
GSKRPY+ +DD+ PRYAD G R SR+RLDYD GG A +Y +AYGDR+ RS+LGY GSRSS
Sbjct: 644 GSKRPYAAIDDISPRYADAGARQSRSRLDYDYGGSASRYREAYGDRLERSSLGYSGSRSS 703
Query: 701 ISSQDSHGLYSSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGV 760
+S+Q+SHG YSSRQ YG GG GG+YSSSYG DY+ RGSDVGGSSYSSMY RG+
Sbjct: 704 LSNQNSHGAYSSRQDPSYGRGSLGGSDGGIYSSSYGGDYLSRGSDVGGSSYSSMYSSRGM 763
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/659 (61%), Positives = 480/659 (72%), Gaps = 32/659 (4%)
Query: 108 GGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENA 167
VDYD+K+ E E++++D + E +D+ E E + V EE G++
Sbjct: 54 AAVDYDEKDLEQY--------EEQYEDGDEVVEYTEDVIEEETDMVDEELDGGDDGEGEG 105
Query: 168 GEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVR 227
E AE VD E+ +HHEM +E RKRKEFEVFVGGLDKD DLRKVF +VGE+TEVR
Sbjct: 106 YENAEEEHNVDVEDEEHHEMVKEHRKRKEFEVFVGGLDKDATESDLRKVFGEVGEITEVR 165
Query: 228 LMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-----------VINGKQCGVTPSQDS 276
LMMNP TKKNKGFAFLR+ATVEQAR+AV+ELKNP ++ GKQCGV PS D+
Sbjct: 166 LMMNPVTKKNKGFAFLRYATVEQARRAVSELKNPSVGLKIWIFYIMVRGKQCGVAPSHDN 225
Query: 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMD 336
DTLF+GNICKTWTKE LKEKLK YGV+N +DL LVEDSNN GMNRG+A LEFS+R +AMD
Sbjct: 226 DTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMD 285
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
AF+RLQKRDV+FGVDR AKVSFADS+ + DEIMAQV+TVF+DGLP SWDEDRV++ LK
Sbjct: 286 AFRRLQKRDVVFGVDRSAKVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKK 345
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
YG I K+ELARNMP+AKRKDFGFVTFDTHD AV CA I N+E+GEGD+KAKVRARLSRP
Sbjct: 346 YGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARLSRP 405
Query: 457 LQR-GKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIG-SRLPPAS----VK 510
LQR + KH RG+FR G+G R R ++ P P P SRLPP +K
Sbjct: 406 LQRPPRMKHGLRGNFRVGQGAPRGGRFAYDRPPPLRRPPPRLLRPDVSRLPPPVRSRPLK 465
Query: 511 RPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRA 570
RPV +RDRRP+MS+ R R + PPP RSYDRR P P YPK +REYGRRDE+PPPRSRA
Sbjct: 466 RPVDIRDRRPVMSIPDRVRRL-PPPERSYDRRPPAPVYPKRSPRREYGRRDELPPPRSRA 524
Query: 571 PV-DYGSRVVPDRRPYRDEYTSRGSGYPDM-PRSTSRGAARRPYVDDGYAQRFERPPPSY 628
DY SRV DRRPYRD+Y+ RGS Y D+ PRS R + RR Y+DDGY + +RP P+Y
Sbjct: 525 TFGDYSSRVPVDRRPYRDDYSPRGSAYSDLGPRSAPRLSDRRAYIDDGYGGKIDRPLPTY 584
Query: 629 REGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMG 688
REGR RDY+T+SGSKR Y+ +DDVPPRY D VR S+ARLDYD+GG + +Y D Y +R+G
Sbjct: 585 REGRGRDYDTMSGSKRSYAEMDDVPPRYHDISVRQSKARLDYDVGGSSARYADTYSERLG 644
Query: 689 RSNLGYGGSRSSISSQDSHGLYSS-RQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDV 746
RS+ GY G R S+S D +YSS R GM YGGS S D GGMYSS++ YM RGSDV
Sbjct: 645 RSHAGYSGGR-SVSGHDP--VYSSGRHGMSYGGSASSNDAGGMYSSNFSGSYMSRGSDV 700
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/777 (56%), Positives = 542/777 (69%), Gaps = 37/777 (4%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKE----EEKAVVEDDNKP 56
MPP++ +RG A R TR A + EE V VEE V+E EE VE+ +
Sbjct: 1 MPPKSARRGGAAAARKGPGTRTRAAKAQLAVEEAVPVEEATVEEVKAAEEAPKVEEQKQQ 60
Query: 57 V-------VVEDEPKSDV--NGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEY 107
E++P + NG+ A VKE+ +E +K ERL+ +D EE
Sbjct: 61 PSPPQQQPTAEEKPPPNATENGASRAEDDGTVVKETDEEDDKGERLEFEDEPEY---EEE 117
Query: 108 GGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENA 167
VDYD+KE ++E+ E G+E E+ E+V EEE D + E E G++
Sbjct: 118 AAVDYDEKEEQYEEQYEEGDEVFEYT-EDVVEEETDMVDE-------ELDEGGDDGEGEE 169
Query: 168 GEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVR 227
E A+ VD ++ DH EM + RKRKEFEVFVGGLDKD DLRKVFS+VGE++EVR
Sbjct: 170 YENADEDHNVDVDDDDHREMVKANRKRKEFEVFVGGLDKDATESDLRKVFSEVGEISEVR 229
Query: 228 LMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKT 287
LMMNP TKKNKGFAFLR+ATVEQAR+AV++LKNP++ GKQCGV PS D+DTLF+GNICKT
Sbjct: 230 LMMNPVTKKNKGFAFLRYATVEQARRAVSDLKNPLVRGKQCGVAPSHDNDTLFVGNICKT 289
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347
WTKE LK+KLK Y V+N +DL LVEDSNN GMNRG+A LEFS+R +AMDAF+RLQKRD +
Sbjct: 290 WTKEHLKDKLKSYEVENFDDLILVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDAV 349
Query: 348 FGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
FGVDR AKVSFADS+ + DE+MAQV+T+F+DGLP SWDEDRV++ LK YG I K+ELAR
Sbjct: 350 FGVDRSAKVSFADSYPEVDDEMMAQVRTIFLDGLPPSWDEDRVKKYLKKYGAIEKVELAR 409
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR-GKGKHAS 466
NMP+AKRKDFGFVTFDTHD AV C I ++E+GEGD+KAKVRARLSRPLQR + KH
Sbjct: 410 NMPAAKRKDFGFVTFDTHDNAVACVDGITSSEIGEGDSKAKVRARLSRPLQRPPRMKHGL 469
Query: 467 RGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIG-SRLPPAS---VKRPVPVRDRRPIM 522
RG+FR G+G R R S+ P P P SRL P +KRP+ +RDRRP+M
Sbjct: 470 RGNFRIGQGAPRGGRFSYARPLPPRRPLPRFVRPDVSRLSPIRGRPLKRPIDIRDRRPVM 529
Query: 523 SMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAP-VDYGSRVVPD 581
S+ R R + PPP RSYDRR P P YPK +REYGRRD++PPPRSRA DY RV D
Sbjct: 530 SVPDRVRRL-PPPERSYDRRPPAPVYPKRSPRREYGRRDDLPPPRSRATFADYSPRVPVD 588
Query: 582 RR-PYRDEYTSRGSGYPDM-PRSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETV 639
RR YRD+Y+ RGS Y D+ PRS R + RR Y DDGY + +RP P+YREGR RDY+T+
Sbjct: 589 RRHSYRDDYSPRGSAYSDLGPRSAPRISDRRAYADDGYGGKIDRPLPTYREGRGRDYDTM 648
Query: 640 SGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRS 699
+GSKR Y+ +DDVPPRY D VR S+ARLDYD+GG +Y DAY +R+GRS+ GY SR
Sbjct: 649 AGSKRSYAEMDDVPPRYHDVSVRQSKARLDYDVGGSNARYADAYTERLGRSHAGYSTSR- 707
Query: 700 SISSQDSHGLY-SSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMY 755
S+S DS +Y SSR GM YGGS S GD GGMYSS++ +DYMPRGSDVGG+SYSS+Y
Sbjct: 708 SVSGHDS--VYSSSRHGMSYGGSASSGDPGGMYSSNFSADYMPRGSDVGGNSYSSLY 762
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/741 (56%), Positives = 517/741 (69%), Gaps = 41/741 (5%)
Query: 26 QQAEVAEETVKVEEVPVKEEEKAVVEDD-------NKPVVVEDEPKSDV--NGSVPATQK 76
++ + AEE KV E P E+ VVE+ +PVVV E SD+ NG A Q
Sbjct: 44 EEVKAAEEVPKVVEAPKVVEDSKVVEEPKPSPLLPQQPVVVV-EKDSDIAANG---ANQG 99
Query: 77 EDE--VKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETE-HEDVQEVGNEEDEHD 133
ED+ KE +E +K ERL+ +D EE VDYD+K+ E +E+ E G+EE E+
Sbjct: 100 EDDRAAKEIYEEEDKGERLEFEDEPEY---EEEAAVDYDEKDLEQYEEQYEDGDEEVEY- 155
Query: 134 DENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAG-EEAERPEMVDAEEHDHHEMFQERR 192
+D+ E E + V EE +G ++VE G E A+ VD ++ +H+EM +E R
Sbjct: 156 --------TEDVVEVETDMVDEELDEGGDDVEGEGYENADEDHHVDGDDEEHNEMVKEHR 207
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
KRKEFE+FVGGLDKD +DL KVF +VGE+TEVRLMMNP TKKNKGFAFLR+ATVEQAR
Sbjct: 208 KRKEFEIFVGGLDKDATENDLMKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQAR 267
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+AV+ELKNP++ GKQCGV PS D+DTLF+GNICKTWTKE LK+KLK YGV++ +DL L E
Sbjct: 268 RAVSELKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYGVESFDDLLLAE 327
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
D+NN GMNRG+A LEFS+R +AMDAF+ LQKRDV+FGVDR AKVSFADS+ DEIMAQ
Sbjct: 328 DTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGVDRSAKVSFADSYPQVDDEIMAQ 387
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
V+TVF+DGLP SWDEDRV++ LK YG I K+ELARNMP+AKRKDFGFVTFDTHD AV C
Sbjct: 388 VRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACT 447
Query: 433 KSINNAELGEGDNKAKVRARLSRPLQR-GKGKHASRGDFRSGRGTGRATRGSWGLPSPRS 491
+ ++N+E+GEG++KAKVRARLSRPLQR + KH RG+FR G G R R + P
Sbjct: 448 EGMSNSEIGEGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPRGGRLPYSRAPPPR 507
Query: 492 LPGRSARGIG-SRLPPAS---VKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPS 547
P SRLP +KRP+ +RDRRP MSM RAR PP RSYDRR P P
Sbjct: 508 RPPPRLIRPAVSRLPSIRSHPLKRPIDIRDRRPAMSMPDRARRF--PPERSYDRRPPAPV 565
Query: 548 YPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRP-YRDEYTSRGSGYPDM-PRSTSR 605
Y K +REYGRRDE+PPPRSRA DY +RV DRRP RD+Y+ RGSGY D+ PRS R
Sbjct: 566 YLKRSPRREYGRRDELPPPRSRATTDYITRVPVDRRPSLRDDYSPRGSGYSDLGPRSAPR 625
Query: 606 GAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSR 665
+ RR Y DD Y ++F+RP +YREGR RDY+T+SGSKRPY+ +DDV PRY + GVR S+
Sbjct: 626 LSDRRAYADDSYGEKFDRPLVAYREGRGRDYDTISGSKRPYADMDDV-PRYQEIGVRQSK 684
Query: 666 ARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGYGGSYSGG 725
ARLDYD+GG + +YGD Y +R GR + GY SRS ++G SSR GM YGGS S
Sbjct: 685 ARLDYDIGGSSARYGDTYSERSGRPHAGYSSSRSIPVHDSAYG--SSRHGMSYGGSASSA 742
Query: 726 DVGGMYSSSYGSDYMPRGSDV 746
D GGMY SY Y RGSDV
Sbjct: 743 DAGGMYPPSYSGSYGSRGSDV 763
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/739 (55%), Positives = 509/739 (68%), Gaps = 37/739 (5%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE 60
MPP+ VKRG+A A + + + + E P+K E V+D V E
Sbjct: 1 MPPKVVKRGSA-------AKKAKVSSKTSIQNPPQEPEPKPIKNHEDNHVDDS---AVEE 50
Query: 61 DEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEY-GGVDYDDKETEH 119
+ ++ NG +EVKES+DEYEKDE LD +DN EY+PEEY G DYD++ E
Sbjct: 51 NSVETVPNGVAMVENNGEEVKESIDEYEKDEHLDFEDNYHEYDPEEYVGDDDYDERGIEQ 110
Query: 120 EDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEV------ENAGEEAER 173
++ QE G+E +E +ENV EEE D E E ++ E+A EE
Sbjct: 111 DEGQEAGDEVEEEPEENVDEEEGDTGDEEVEEVEYVYEEVEGDDDDVAGDDEHASEENVH 170
Query: 174 PEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ 233
+ D +E + E+ +E +K+KE EVFVGGLDK+ DLRKVFS+VGE+TEVR+ +NPQ
Sbjct: 171 EHLADVKEEEQVEVIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQ 230
Query: 234 TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT--PSQDSDTLFLGNICKTWTKE 291
TK+NKGFA LRF TVE ++A+ ELKNPVINGKQCG+T QDSDTL+L NICK+W KE
Sbjct: 231 TKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKE 290
Query: 292 ALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351
ALKEKLKHYGV++ +DLTL+ED NNEG N G AFLEFSS SD+ DA+KRLQK DV+FGVD
Sbjct: 291 ALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD 350
Query: 352 RPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+PA+VSFA+SFID GD+IMAQVKTVF+D LP SWDED VR LLK YG + K+ELA+NMP
Sbjct: 351 KPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPG 410
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFR 471
A+RK++GFVTF TH AAV CA+SI +A LGEG+ KAKVRARLSRPL + +GKH D
Sbjct: 411 ARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKVRGKHVPHRDI- 469
Query: 472 SGRGTGRATRGSWGLPSPRSLPGRSA------RGIGSRLPPASVKRPVPVRDRRPIMSMT 525
SGR GR R S P+PRS P + R +GSR+PPA RP R+RRP+ S+
Sbjct: 470 SGRKIGRLERPSRSRPAPRSRPAPQSRPAHVFRRLGSRIPPA---RPSSARNRRPVTSIP 526
Query: 526 ARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPY 585
RARP PP RSY R A +YPK +KR+YGR ++PPPRSR DYGS+VV R P
Sbjct: 527 VRARPA-SPPARSYRRLA--AAYPKSSMKRDYGRPVDLPPPRSRVSADYGSQVVSQRGPS 583
Query: 586 RDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERPPP-----SYREGRARDYETVS 640
+Y +R SGYPD+ R TSR A RR Y+DDGY +R ERPP SYREGR RDY+ +S
Sbjct: 584 YRDYPARDSGYPDLHRDTSRTAPRRGYLDDGYDRRLERPPSPSPRLSYREGRPRDYDALS 643
Query: 641 GSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSS 700
GSKRPY+ +DD+ PRYAD G R SR+RLDYD GG A +Y +AYGDR+ RS+LGY GSRSS
Sbjct: 644 GSKRPYAAIDDISPRYADAGARQSRSRLDYDYGGSASRYREAYGDRLERSSLGYSGSRSS 703
Query: 701 ISSQDSHGLYSSRQGMGYG 719
+S+Q+SHG YSSRQ YG
Sbjct: 704 LSNQNSHGAYSSRQDPSYG 722
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/766 (55%), Positives = 522/766 (68%), Gaps = 40/766 (5%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE 60
MPP++VKRG A R AT+ A + AEE VE V EE V E +P
Sbjct: 1 MPPKSVKRGGAAAARKGSATKARAAKPQPHAEEA-PVEVVKAAEEAPKVEEQKPQPSPPP 59
Query: 61 DEPKSDV--------NGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDY 112
+P ++ NG+ A Q + KE+ +E +K ERL+ +D EE VDY
Sbjct: 60 QQPAAEEKAKAVAVENGASHA-QDDGTAKETYEEEDKGERLEFEDEPEY---EEEPVVDY 115
Query: 113 DDKETE-HEDVQEVGNEEDEHDDENVGEEEEDD----LAEGEMEDVPEEHGQGEEEVENA 167
D+K+ E +E+ E G+E E+ ++ V EE E L G +D EE+ +E+ +
Sbjct: 116 DEKDLEQYEEQYEDGDEGLEYTEDVVEEETEMVDEEELDNGGDDDEGEEYENADEDHDVD 175
Query: 168 GEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVR 227
E+ + EMV A RKRKEFEVFVGGLDKD DLRKVFS+VGE+TEVR
Sbjct: 176 VEDEDHHEMVKAH-----------RKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVR 224
Query: 228 LMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKT 287
LMMNP TKKNKGFAFLRF TVEQA++AV++LKNP++ GKQCGV PS+D+DTLF+GNICKT
Sbjct: 225 LMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKNPMVRGKQCGVAPSRDNDTLFVGNICKT 284
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347
WTKE LK+KLK Y V+N +DL LVEDSNN GMNRG+A LEFS+R +AMDAF+RLQKRDV+
Sbjct: 285 WTKEHLKDKLKIYEVENFDDLILVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVV 344
Query: 348 FGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
FGVDR AKVSFADS+ + DE+MAQV+TVF+DGLP SW+EDRV++ LK YG I K+ELAR
Sbjct: 345 FGVDRTAKVSFADSYPEVDDEMMAQVRTVFLDGLPPSWEEDRVKKYLKKYGAIEKVELAR 404
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR-GKGKHAS 466
NMP+AKRKDFGFVTFDTHD AV C I ++E+GEGD+KAKVRARLSRP+QR + KH
Sbjct: 405 NMPAAKRKDFGFVTFDTHDNAVACVDGITSSEIGEGDSKAKVRARLSRPVQRPPRMKHGL 464
Query: 467 RGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPAS---VKRPVPVRDRRPIMS 523
RG+FR G R R + P PR R +RLPP +KRP+ +RDRRP+MS
Sbjct: 465 RGNFRIGHSAPRGGRFPYTRPPPRRPLPHLVRP-DTRLPPVRRPPLKRPMDIRDRRPVMS 523
Query: 524 MTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAP-VDYGSRVVPDR 582
+ R R + PPP RSYDRR P P YPK +REYGRRDE PPPRSRA DY +RV DR
Sbjct: 524 IPDRVRRL-PPPERSYDRRPPAPVYPKRSPRREYGRRDEPPPPRSRATFADYSARVPVDR 582
Query: 583 R-PYRDEYTSRGSGYPDM-PRSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVS 640
R YRD+Y R S Y D+ PRS R + RR Y DDGY ++ +RP P+YRE R RDY+T+S
Sbjct: 583 RHTYRDDYLPRESAYSDLAPRSAPRLSDRRAYADDGYVEKIDRPLPTYREARGRDYDTIS 642
Query: 641 GSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSS 700
GSKR Y +DDVPPRY D VR +ARLDYD+GG + +Y DAY +R+GRS++GY RS
Sbjct: 643 GSKRSYVEMDDVPPRYHDISVRQPKARLDYDVGGSSARYADAYTERLGRSHVGYSSGRSV 702
Query: 701 ISSQDSHGLYSSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDV 746
+ SSR G+ YGGS S GD GG Y+S+Y +DYMPRGSDV
Sbjct: 703 AGHDPVYS--SSRHGLSYGGSASTGDAGGNYTSNYSADYMPRGSDV 746
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 297/342 (86%), Positives = 312/342 (91%), Gaps = 1/342 (0%)
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
AG E EMVDAE+ +HHE+F+ERRKRKEFEVFVGGLDKD DDL+KVFSQVGEVTEV
Sbjct: 1 AGGLQEHAEMVDAEDEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLKKVFSQVGEVTEV 60
Query: 227 RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICK 286
RLMMNPQTKKNKGFAFLRFATVEQA++AVTELKNPV+NGKQCGVTPSQDSDTLFLGNICK
Sbjct: 61 RLMMNPQTKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICK 120
Query: 287 TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
TWTKEALKEKLKHYGV+NVEDLTLVEDSNNEGMNRGFAFLEFS RSDAMDAFKRLQ+
Sbjct: 121 TWTKEALKEKLKHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSFRSDAMDAFKRLQEERC 180
Query: 347 LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELA 406
+FGVDR AKVSF DSFIDPGDEIMAQVKTVF+DGLPASWDEDRVRELLK YGEI KIELA
Sbjct: 181 VFGVDRTAKVSFTDSFIDPGDEIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELA 240
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHAS 466
RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG+NKAKVRARLSRPLQRGKGKH S
Sbjct: 241 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGENKAKVRARLSRPLQRGKGKHIS 300
Query: 467 RGDFRSGRGT-GRATRGSWGLPSPRSLPGRSARGIGSRLPPA 507
RGDFR GRG R RGSW P+ RS PGR ARG+G RLPPA
Sbjct: 301 RGDFRPGRGGPVRGVRGSWARPALRSFPGRGARGLGPRLPPA 342
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 347/615 (56%), Positives = 418/615 (67%), Gaps = 41/615 (6%)
Query: 172 ERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN 231
E EM+D E +HH++ +ERRKRKEFEVFVGGLD+DV DDL F QVG++TEVRLM N
Sbjct: 100 EHEEMMDGYEDEHHDLVKERRKRKEFEVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKN 159
Query: 232 PQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKE 291
T+KNKGFAF+RFATVEQAR+AV ELK+PVINGKQCGV PSQDSDTLF+GNICKTWTK
Sbjct: 160 ALTQKNKGFAFIRFATVEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKV 219
Query: 292 ALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351
A+K+KL +YGVD EDLTLVED+ NEGMNRGFAFL+FSSR+DA++A KRLQKRDV+FG D
Sbjct: 220 AVKDKLAYYGVDKYEDLTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVFGTD 279
Query: 352 RPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
R A+V+FAD+FI+P DEIM+QV+T+F+DGLPA+WDEDRVR+ LK +G I KIELARNMP+
Sbjct: 280 RTARVAFADTFIEPDDEIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPA 339
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFR 471
AKR DFGFVTFDTHD+AV C SINN+EL +G+ KVRARLSRP QRGK +RG +
Sbjct: 340 AKRTDFGFVTFDTHDSAVACVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHARGGYL 399
Query: 472 SGRGTGRATRGSWGLPSPR----SLPGRSARGIGSR-LPPASVKRPVPVRDRRPIMSMT- 525
+G+GR + WG S R GR R + +R +KRPV RDR +M M
Sbjct: 400 VAQGSGRGFKAPWGSSSSRMDSWKFTGRGGRSMQTRGAYDGGLKRPVGPRDRHSMMEMVP 459
Query: 526 --ARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEV---PPPRSRAPVDYGSRVVP 580
+R P P S+ RR+PV Y K KREY +RDE P +R P
Sbjct: 460 TRVGSRRRFPSPESSFGRRSPV--YEKSSTKREYIQRDESFSRPAVFARDPT-------- 509
Query: 581 DRRPYRDEYTSRGSGYPDM-PRSTSRGAARRP--YVDDGYAQRFERPPPSYREGRARDYE 637
+RR Y+D Y+SRGS Y D PR+ SR A R Y DD Y + ER P +Y +G DY
Sbjct: 510 ERRYYKDNYSSRGSEYLDSPPRNVSRAAGHRAPLYEDDDYDRYLER-PTNYHDGHRHDYG 568
Query: 638 TVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGD------RMGR-S 690
++S SKR +S +++V RYA+P +RHSRAR DY Y D YG RMGR S
Sbjct: 569 SISSSKRSHSAMEEVHSRYAEPPIRHSRARFDYGGSNSGLPYDDHYGSESTSERRMGRGS 628
Query: 691 NLGY-GGSRSSISSQDSHGLYSSRQG-MGY-GGSYSGGDVGGMYSS---SYGS-DYMPRG 743
LGY GG RS SS S G+Y +R GY S G+ GMYSS Y S DYMP
Sbjct: 629 RLGYDGGMRS--SSGHSRGMYETRTSTTGYRRDDISRGNEEGMYSSYDREYMSRDYMPSR 686
Query: 744 SDVGGSSYSSMYPGR 758
SD+G SY S YP R
Sbjct: 687 SDLGTGSYPSDYPSR 701
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 347/618 (56%), Positives = 418/618 (67%), Gaps = 44/618 (7%)
Query: 172 ERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN 231
E EM+D E +HH++ +ERRKRKEFEVFVGGLD+DV DDL F QVG++TEVRLM N
Sbjct: 161 EHEEMMDGYEDEHHDLVKERRKRKEFEVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKN 220
Query: 232 PQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKE 291
T+KNKGFAF+RFATVEQAR+AV ELK+PVINGKQCGV PSQDSDTLF+GNICKTWTK
Sbjct: 221 ALTQKNKGFAFIRFATVEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKV 280
Query: 292 ALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351
A+K+KL +YGVD EDLTLVED+ NEGMNRGFAFL+FSSR+DA++A KRLQKRDV+FG D
Sbjct: 281 AVKDKLAYYGVDKYEDLTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVFGTD 340
Query: 352 RPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
R A+V+FAD+FI+P DEIM+QV+T+F+DGLPA+WDEDRVR+ LK +G I KIELARNMP+
Sbjct: 341 RTARVAFADTFIEPDDEIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPA 400
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFR 471
AKR DFGFVTFDTHD+AV C SINN+EL +G+ KVRARLSRP QRGK +RG +
Sbjct: 401 AKRTDFGFVTFDTHDSAVACVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHARGGYL 460
Query: 472 SGRGTGRATRGSWGLPSPR----SLPGRSARGIGSR-LPPASVKRPVPVRDRRPIMSMT- 525
+G+GR + WG S R GR R + +R +KRPV RDR +M M
Sbjct: 461 VAQGSGRGFKAPWGSSSSRMDSWKFTGRGGRSMQTRGAYDGGLKRPVGPRDRHSMMEMVP 520
Query: 526 --ARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEV---PPPRSRAPVDYGSRVVP 580
+R P P S+ RR+PV Y K KREY +RDE P +R P
Sbjct: 521 TRVGSRRRFPSPESSFGRRSPV--YEKSSTKREYIQRDESFSRPAVFARDPT-------- 570
Query: 581 DRRPYRDEYTSRGSGYPDM-PRSTSRGAARRP--YVDDGYAQRFERPPPSYREGRARDYE 637
+RR Y+D Y+SRGS Y D PR+ SR A R Y DD Y + ER P +Y +G DY
Sbjct: 571 ERRYYKDNYSSRGSEYLDSPPRNVSRAAGHRAPLYEDDDYDRYLER-PTNYHDGHRHDYG 629
Query: 638 TVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGD------RMGR-S 690
++S SKR +S +++V RYA+P +RHSRAR DY Y D YG RMGR S
Sbjct: 630 SISSSKRSHSAMEEVHSRYAEPPIRHSRARFDYGGSNSGLPYDDHYGSESTSERRMGRGS 689
Query: 691 NLGY-GGSRSSISSQDSHGLYSSRQG-MGY----GGSYSGGDVGGMYSS---SYGS-DYM 740
LGY GG RS SS S G+Y +R GY S G+ GMYSS Y S DYM
Sbjct: 690 RLGYDGGMRS--SSGHSRGMYETRTSTTGYRRVLADDISRGNEEGMYSSYDREYMSRDYM 747
Query: 741 PRGSDVGGSSYSSMYPGR 758
P SD+G SY S YP R
Sbjct: 748 PSRSDLGTGSYPSDYPSR 765
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 294/341 (86%), Positives = 305/341 (89%), Gaps = 1/341 (0%)
Query: 167 AGEEAERPEMVDAEEHDHHEM-FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
AGEE E EM D EE D H F+ERRKRKEFEVFVGGLDKD DDLRK+FS+VGEVTE
Sbjct: 1 AGEEVEHAEMADVEEEDEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKIFSRVGEVTE 60
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNIC 285
VRLMMNPQTKKNKGFAFLRFATVEQA++AVTELKNPVINGKQCGVTPSQDSDTLFLGNIC
Sbjct: 61 VRLMMNPQTKKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNIC 120
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
KTWTKEALKEKLKHYGV+NV+DLTLVEDSNN GMNRGFAFLEFSSRSDAMDAFKRLQKRD
Sbjct: 121 KTWTKEALKEKLKHYGVENVKDLTLVEDSNNAGMNRGFAFLEFSSRSDAMDAFKRLQKRD 180
Query: 346 VLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405
VLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF+DGLPASWDEDRVR LLK YGEI KIEL
Sbjct: 181 VLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPASWDEDRVRVLLKKYGEIEKIEL 240
Query: 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHA 465
ARNMPSA+RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKH
Sbjct: 241 ARNMPSARRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHL 300
Query: 466 SRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPP 506
SRGDFR G G R +G W P P S R RGI +R PP
Sbjct: 301 SRGDFRPGYGASRVVKGPWVRPVPHSYSTRPVRGIATRAPP 341
>gi|218195305|gb|EEC77732.1| hypothetical protein OsI_16837 [Oryza sativa Indica Group]
Length = 572
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 316/493 (64%), Positives = 372/493 (75%), Gaps = 13/493 (2%)
Query: 263 INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG 322
+ GKQCGV PS D+DTLF+GNICKTWTKE LKEKLK YGV+N +DL LVEDSNN GMNRG
Sbjct: 54 VRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRG 113
Query: 323 FAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLP 382
+A LEFS+R +AMDAF+RLQKRDV+FGVDR AKVSFADS+ + DEIMAQV+TVF+DGLP
Sbjct: 114 YALLEFSTRPEAMDAFRRLQKRDVVFGVDRSAKVSFADSYPEVDDEIMAQVRTVFIDGLP 173
Query: 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
SWDEDRV++ LK YG I K+ELARNMP+AKRKDFGFVTFDTHD AV CA I N+E+GE
Sbjct: 174 PSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEIGE 233
Query: 443 GDNKAKVRARLSRPLQR-GKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIG 501
GD+KAKVRARLSRPLQR + KH RG+FR G+G R R ++ P P P
Sbjct: 234 GDSKAKVRARLSRPLQRPPRMKHGLRGNFRVGQGAPRGGRFAYDRPPPLRRPPPRLLRPD 293
Query: 502 -SRLPP----ASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKRE 556
SRLPP +KRPV +RDRRP+MS+ R R + PPP RSYDRR P P YPK +RE
Sbjct: 294 VSRLPPPVRSHPLKRPVDIRDRRPVMSIPDRVRRL-PPPERSYDRRPPAPVYPKRSPRRE 352
Query: 557 YGRRDEVPPPRSRAPV-DYGSRVVPDRRPYRDEYTSRGSGYPDM-PRSTSRGAARRPYVD 614
YGRRDE+PPPRSRA DY SRV DRRPYRD+Y+ RGS Y D+ PRS R + RR Y+D
Sbjct: 353 YGRRDELPPPRSRATFGDYSSRVPVDRRPYRDDYSPRGSAYSDLGPRSAPRLSDRRAYID 412
Query: 615 DGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGG 674
DGY + +R P+YREGR RDY+T+SGSKR Y+ +DDVPPRY D VR S+ARLDYD+GG
Sbjct: 413 DGYGGKIDRSLPTYREGRGRDYDTMSGSKRSYAEMDDVPPRYHDISVRQSKARLDYDVGG 472
Query: 675 GAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSS-RQGMGYGGSYSGGDVGGMYSS 733
+ +Y D Y +R+GRS+ GY G R S+S D +YSS R GM YGGS S D GGMYSS
Sbjct: 473 SSARYADTYSERLGRSHAGYSGGR-SVSGHDP--VYSSGRHGMNYGGSASSNDAGGMYSS 529
Query: 734 SYGSDYMPRGSDV 746
++ YM RGSDV
Sbjct: 530 NFSGSYMSRGSDV 542
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 288/343 (83%), Positives = 301/343 (87%), Gaps = 3/343 (0%)
Query: 167 AGEEAERPEMVDAEEHDHHEM-FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
AGEE ER EM D EE D H F+ERRKRKEFE+FVGGLDKD DDLRKVFS+VGEVTE
Sbjct: 1 AGEEVERAEMADVEEEDEHHEVFKERRKRKEFEIFVGGLDKDATEDDLRKVFSRVGEVTE 60
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNIC 285
RLMMNPQTKKNKGFAFLRFATVEQA++AVTELKNPVINGKQCGVTPSQDSDTLFLGNIC
Sbjct: 61 ARLMMNPQTKKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNIC 120
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
KTWTKEALKEKLKHYGV+NVEDLTLVEDSNN GMNRGFAFLEFSSRSDAM+AFKRLQKRD
Sbjct: 121 KTWTKEALKEKLKHYGVENVEDLTLVEDSNNLGMNRGFAFLEFSSRSDAMNAFKRLQKRD 180
Query: 346 VLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405
VLFGVDRPAKVSFADSFI PGDEIMAQVKT+F+DGLPASWDEDR R LLK YG I KIEL
Sbjct: 181 VLFGVDRPAKVSFADSFIGPGDEIMAQVKTLFIDGLPASWDEDRFRVLLKKYGNIEKIEL 240
Query: 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHA 465
ARNMPSA+RKDFGFVTFDTHDAAV CAKSINN ELGEGDNK KVRARLSRPLQRGKGKHA
Sbjct: 241 ARNMPSARRKDFGFVTFDTHDAAVACAKSINNVELGEGDNKVKVRARLSRPLQRGKGKHA 300
Query: 466 SRGDFRSGRGTGRATRGSWGLPSPRSLPGRS--ARGIGSRLPP 506
SRGDF+SG G R RG W P S R+ RGI +R PP
Sbjct: 301 SRGDFQSGHGASRVVRGPWVRPLQHSYSTRAPPVRGIATRAPP 343
>gi|162459112|ref|NP_001105099.1| RNA recognition water-stress protein1 [Zea mays]
gi|22655529|gb|AAN04093.1| water-stress protein [Zea mays]
Length = 480
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 266/444 (59%), Positives = 316/444 (71%), Gaps = 12/444 (2%)
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
L+ NN GMNRG+A LEFS+R +AMDAF+ LQKRDV+FGVDR AKVSFADS+ DEI
Sbjct: 11 LLRTPNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGVDRSAKVSFADSYPQVDDEI 70
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
MAQV+TVF+DGLP SWDEDRV++ LK YG I K+ELARNMP+AKRKDFGFVTFDTHD AV
Sbjct: 71 MAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAV 130
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRPLQR-GKGKHASRGDFRSGRGTGRATRGSWGLPS 488
C + ++N+E+GEG++KAKVRARLSRPLQR + KH RG+FR G G R R +
Sbjct: 131 ACTEGMSNSEIGEGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPRGGRLPYSRAP 190
Query: 489 PRSLPGRSARGIG-SRLPPAS---VKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAP 544
P P SRLP +KRP+ +RDRRP MSM RAR PP RSYDRR P
Sbjct: 191 PPRRPPPRLIRPAVSRLPSIRSHPLKRPIDIRDRRPAMSMPDRARRF--PPERSYDRRPP 248
Query: 545 VPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRP-YRDEYTSRGSGYPDM-PRS 602
P Y K +REYGRRDE+PPPRSRA DY +RV DRRP RD+Y+ RGSGY D+ PRS
Sbjct: 249 APVYLKRSPRREYGRRDELPPPRSRATTDYITRVPVDRRPSLRDDYSPRGSGYSDLGPRS 308
Query: 603 TSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVR 662
R + RR Y DD Y ++F+RP +YREGR RDY+T+SGSKRPY+ +DDV PRY + GVR
Sbjct: 309 APRLSDRRAYADDSYGEKFDRPLVAYREGRGRDYDTISGSKRPYADMDDV-PRYQEIGVR 367
Query: 663 HSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGYGGSY 722
S+ARLDYD+GG + +YGD Y +R GR + GY SRS ++G SSR GM YGGS
Sbjct: 368 QSKARLDYDIGGSSARYGDTYSERSGRPHAGYSSSRSIPVHDSAYG--SSRHGMSYGGSA 425
Query: 723 SGGDVGGMYSSSYGSDYMPRGSDV 746
S D GGMY SY Y RGSDV
Sbjct: 426 SSADAGGMYPPSYSGSYGSRGSDV 449
>gi|414586042|tpg|DAA36613.1| TPA: water-stress protein [Zea mays]
Length = 479
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/452 (59%), Positives = 318/452 (70%), Gaps = 12/452 (2%)
Query: 302 VDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
V V + +NN GMNRG+A LEFS+R +AMDAF+ LQKRDV+FGVDR AKVSFADS
Sbjct: 2 VSKVLTTYYLLRTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGVDRSAKVSFADS 61
Query: 362 FIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVT 421
+ DEIMAQV+TVF+DGLP SWDEDRV++ LK YG I K+ELARNMP+AKRKDFGFVT
Sbjct: 62 YPQVDDEIMAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVT 121
Query: 422 FDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR-GKGKHASRGDFRSGRGTGRAT 480
FDTHD AV C + ++N+E+GEG++KAKVRARLSRPLQR + KH RG+FR G G R
Sbjct: 122 FDTHDNAVACTEGMSNSEIGEGEHKAKVRARLSRPLQRPPRMKHGLRGNFRVGHGAPRGG 181
Query: 481 RGSWGLPSPRSLPGRSARGIG-SRLPPAS---VKRPVPVRDRRPIMSMTARARPMPPPPP 536
R + P P SRLP +KRP+ +RDRRP MSM RAR PP
Sbjct: 182 RLPYSRAPPPRRPPPRLIRPAVSRLPSIRSHPLKRPIDIRDRRPAMSMPDRARRF--PPE 239
Query: 537 RSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRP-YRDEYTSRGSG 595
RSYDRR P P Y K +REYGRRDE+PPPRSRA DY +RV DRRP RD+Y+ RGSG
Sbjct: 240 RSYDRRPPAPVYLKRSPRREYGRRDELPPPRSRATTDYITRVPVDRRPSLRDDYSPRGSG 299
Query: 596 YPDM-PRSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPP 654
Y D+ PRS R + RR Y DD Y ++F+RP +YREGR RDY+T+SGSKRPY+ +DDV P
Sbjct: 300 YSDLGPRSAPRLSDRRAYADDSYGEKFDRPLVAYREGRGRDYDTISGSKRPYADMDDV-P 358
Query: 655 RYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQ 714
RY + GVR S+ARLDYD+GG + +YGD Y +R GR + GY SRS ++G SSR
Sbjct: 359 RYQEIGVRQSKARLDYDIGGSSARYGDTYSERSGRPHAGYSSSRSIPVHDSAYG--SSRH 416
Query: 715 GMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDV 746
GM YGGS S D GGMY SY Y RGSDV
Sbjct: 417 GMSYGGSASSADAGGMYPPSYSGSYGSRGSDV 448
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 247/447 (55%), Positives = 313/447 (70%), Gaps = 19/447 (4%)
Query: 1 MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE 60
MPP+ VKRG+A + A+ + T+ Q + E P+K E V+D V E
Sbjct: 1 MPPKVVKRGSAAKK--AKVSSKTSIQNP-----PQEPEPKPIKNHEDNHVDD---SAVEE 50
Query: 61 DEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEY-GGVDYDDKETEH 119
+ ++ NG +EVKES+DEYEKDE LD +DN EY+PEEY G DYD++ E
Sbjct: 51 NSVETVPNGVAMVENNGEEVKESIDEYEKDEHLDFEDNYHEYDPEEYVGDDDYDERGIEQ 110
Query: 120 EDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEV------ENAGEEAER 173
++ QE G+E +E +ENV EEE D E E ++ E+A EE
Sbjct: 111 DEGQEAGDEVEEEPEENVDEEEGDTGDEEVEEVEYVYEEVEGDDDDVAGDDEHASEENVH 170
Query: 174 PEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ 233
+ D +E + E+ +E +K+KE EVFVGGLDK+ DLRKVFS+VGE+TEVR+ +NPQ
Sbjct: 171 EHLADVKEEEQVEVIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQ 230
Query: 234 TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS--QDSDTLFLGNICKTWTKE 291
TK+NKGFA LRF TVE ++A+ ELKNPVINGKQCG+T + QDSDTL+L NICK+W KE
Sbjct: 231 TKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKE 290
Query: 292 ALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351
ALKEKLKHYGV++ +DLTL+ED NNEG N G AFLEFSS SD+ DA+KRLQK DV+FGVD
Sbjct: 291 ALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD 350
Query: 352 RPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+PA+VSFA+SFID GD+IMAQVKTVF+D LP SWDED VR LLK YG + K+ELA+NMP
Sbjct: 351 KPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPG 410
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINNA 438
A+RK++GFVTF TH AAV CA+SI +A
Sbjct: 411 ARRKNYGFVTFGTHAAAVECAESITSA 437
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 228/307 (74%), Gaps = 5/307 (1%)
Query: 180 EEHDHHEMFQERRK-RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
EEH E +RK +KE E+FVGGLD+D +DLRKVF ++GE+ EVRL N T KNK
Sbjct: 440 EEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNK 499
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298
G+AF++FA E A++A++E+KNPVI+GK+CG PS+D+DTLFLGNIC TWTKEA+K+KLK
Sbjct: 500 GYAFVKFANKENAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLK 559
Query: 299 HYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVS 357
YG++ VE +TLV D +EG++RGFAFLEFS +DAM AFKRLQK DV+FG +R AKV+
Sbjct: 560 DYGIEGVESITLVPDVQHEGLSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVA 619
Query: 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417
FA+ +P EIMAQVK+VF++GLP WDED VREL K YGEI +I LARNM SAKRKD+
Sbjct: 620 FAEPIHEPDPEIMAQVKSVFINGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDY 679
Query: 418 GFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTG 477
GFV F TH+AAV C +N +ELG+G +K KVRARLS PL + A +G G
Sbjct: 680 GFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPK---TQAVKGGMSGGFRIS 736
Query: 478 RATRGSW 484
A G++
Sbjct: 737 HARSGAF 743
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 85/406 (20%), Positives = 175/406 (43%), Gaps = 52/406 (12%)
Query: 71 VPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEED 130
+ A + ++E+KE E K+E +LD + + E +E G KE E E G EE
Sbjct: 254 LDAEKAKEELKELDGEKGKEELKELDGEKGKEELKELDG--EKGKEELKELDGEKGKEEL 311
Query: 131 EHDDENVGEEEEDDL----AEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHE 186
+ G+EE +L +GE+ ++ + G+ E + + + E+ ++ + E+ E
Sbjct: 312 TELEGQKGKEELTELEGQKGKGELTELEGQKGKVELKEQEGDKGKEKLKVQELEKAKGEE 371
Query: 187 MFQERRKR--KEFEVFVGGL----DKDVVGDDLRKVFS----QVGEVTEVRLMMNPQTKK 236
+ K K F V V D + + DD + S +GE +V L+ +
Sbjct: 372 TYLSGHKENTKSFGVEVKAQMQKEDANPIKDDGEGLQSCEKYDLGEQGKVELVEEDPEEP 431
Query: 237 NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEK 296
+ A E+ R+ + N ++ + +F+G + + T+E L++
Sbjct: 432 PE----ETLALEEEHREL-----EAIANQRKI-----KKEHEIFVGGLDRDATEEDLRKV 477
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356
+ G + ++ L ++S+ N+G+AF++F+++ +A A + K V+ G R
Sbjct: 478 FQRIG--EIVEVRLHKNSST-NKNKGYAFVKFANKENAKKALSEM-KNPVIHG-KRCGTA 532
Query: 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR-- 414
D+ T+F+ + +W ++ +++ LK+YG I +E +P +
Sbjct: 533 PSEDN------------DTLFLGNICNTWTKEAIKQKLKDYG-IEGVESITLVPDVQHEG 579
Query: 415 --KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
+ F F+ F H A+ K + ++ G + + + P+
Sbjct: 580 LSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIH 625
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 176/305 (57%), Positives = 229/305 (75%), Gaps = 8/305 (2%)
Query: 180 EEHDHHEMFQ----ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK 235
EEHD H F+ +RR RKE E+FVGGLD+D +DL+K+F ++GEV EVRL N T
Sbjct: 397 EEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTS 456
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKE 295
KN+G+A +RFA E A++A++E+KNPVI GK+CG +PS+D+DTLFLGNIC TWTKEA+K+
Sbjct: 457 KNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQ 516
Query: 296 KLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPA 354
KLK YGV+ VE++TLV D +EG++RGFAFLEFS +DAM A+KRLQK V+FG +R A
Sbjct: 517 KLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTA 576
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
KV+FA+ +P EIMAQVK+VF++GLP WDED VRE LK+YGEI KI LAR M ++KR
Sbjct: 577 KVAFAEPIREPDPEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKR 636
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGR 474
KD GFV F TH+AA+ C +N +ELG+G +K K+RARLS PL + + A +G G
Sbjct: 637 KDHGFVDFSTHEAALACVDGVNKSELGDGTSKIKLRARLSNPLPKTQ---AVKGGMCGGL 693
Query: 475 GTGRA 479
G+A
Sbjct: 694 RIGQA 698
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 175/307 (57%), Positives = 229/307 (74%), Gaps = 5/307 (1%)
Query: 180 EEHDHHEMFQERRK-RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
EEH E +RK +KE E+FVGGLD+D +DLRKVF ++GE+ EVRL N T KNK
Sbjct: 371 EEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNK 430
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298
G+AF++F+ E A++A++E+KNPVI+GK+CG PS+D+DTLFLGNIC TWTKEA+K+KLK
Sbjct: 431 GYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLK 490
Query: 299 HYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVS 357
YG++ VE++ LV D +EG++ GFAFLEFS +DAM A+KRLQK DV+FG +R AKV+
Sbjct: 491 DYGIEGVENIMLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVA 550
Query: 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417
FA+ +P EIMAQVK+VF++GLP WDED VREL K+YGE+ +I LARNM SAKRKD+
Sbjct: 551 FAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDY 610
Query: 418 GFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTG 477
GFV F TH+AAV C +N +ELG+G +K KVRARLS PL + + A +G G
Sbjct: 611 GFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQ---AVKGGMCGGFQIS 667
Query: 478 RATRGSW 484
A G++
Sbjct: 668 HARSGAF 674
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 172/304 (56%), Positives = 231/304 (75%), Gaps = 5/304 (1%)
Query: 187 MFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
+ +ER+ +KE+E+FVGGLD++ +D+R+VF +GEV EVRL N K+KG+AF++FA
Sbjct: 333 VVKERKIKKEYEIFVGGLDREATEEDVRRVFETIGEVVEVRLHRNLAMSKSKGYAFVKFA 392
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
E A+++++E+KNPVI GK+CG PS+D+DTLFLGNIC TWTKEA+++KLK YGV+ VE
Sbjct: 393 NKEHAKRSLSEMKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVE 452
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV-DRPAKVSFADSFIDP 365
++TLV D +EG +RGFAFLEFS +DAM A+KRLQK DV+FG +R AKV+FA+ +P
Sbjct: 453 NITLVADVQHEGRSRGFAFLEFSCHADAMHAYKRLQKPDVVFGHPERTAKVAFAEPIREP 512
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
E+MA VKTVF+DGLP WDEDRVRE L+ YGEI +I LARNM +AKRKDFGFV F +H
Sbjct: 513 DPEVMAHVKTVFLDGLPPHWDEDRVREQLRGYGEIMRIVLARNMSTAKRKDFGFVDFSSH 572
Query: 426 DAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKG-KHASRGDF---RSGRGTGRATR 481
+AA+ C + INNAELG+G++K +V+ARLS P+ + + K G F R+G GT
Sbjct: 573 EAAIACIERINNAELGDGNSKTRVKARLSNPMPKTQAVKGGMCGGFLIDRTGSGTSSRFG 632
Query: 482 GSWG 485
S+G
Sbjct: 633 RSFG 636
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 358 bits (920), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 167/270 (61%), Positives = 216/270 (80%), Gaps = 1/270 (0%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
+ER+ +KE+E+FVGGLD+D +DLRKVF ++GEV EVRL N T +NKG+AF++FA+
Sbjct: 13 KERKIKKEYEIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFASK 72
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
E ++A++E+KNPVI GK+CG PS+D+DTLFLGNIC TWTKEA+++KLK YGV+ VE++
Sbjct: 73 EHVKRALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENI 132
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV-DRPAKVSFADSFIDPGD 367
T+V D+ +EG +RGFAFLEF+ +DAM A+KRLQK DV+FG +R AKV+FA+ +P
Sbjct: 133 TVVSDAQHEGRSRGFAFLEFACHADAMLAYKRLQKPDVVFGHPERTAKVAFAEPIREPDP 192
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
EIMAQVKT+F+DGLP WDEDRVRE LK YGEI ++ LARNM +AKRKDFGFV F THD
Sbjct: 193 EIMAQVKTIFLDGLPPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRKDFGFVDFSTHDD 252
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPL 457
AV C + INN E G G+ K +V+ARLS PL
Sbjct: 253 AVACIEGINNREFGNGNTKTRVKARLSNPL 282
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 358 bits (919), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 191/415 (46%), Positives = 278/415 (66%), Gaps = 12/415 (2%)
Query: 82 ESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEE 141
E ++E D + + E E + E GV + + + VG + ++ D+ +E
Sbjct: 33 EPIEEVNADAEVLESEKESENQAENMDGVQKLENTNDKKPENIVGGQIEKADEAAQLKEN 92
Query: 142 EDDLAEGEMEDVPEEHG---QGEEEVENAGEEAERPEM--VDAEEHDHHEMFQERRKRKE 196
+ ++EG M+D +E G GEE++ + + +M ++ E +D +ER+ +KE
Sbjct: 93 DAPVSEG-MDDYGDEEGFVEPGEEDLRDDDDPETTDDMKVLNEENNDLAAAAKERKIKKE 151
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
E+F+GGLD +VV +DL+ F +VGEV EVRL+ + T KN+G F+RFAT +QA++A++
Sbjct: 152 HEIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALS 211
Query: 257 ELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
E+KNPVI+GK+CG S+D+DTLF+GNIC TWTKEA+ +KLK Y ++ VE++TLV+D +
Sbjct: 212 EMKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAINKKLKEYNLEGVENITLVQDPRH 271
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVSFADSFIDPGDEIMAQVKT 375
EG++RGF F++F+ DAM AFKRLQK DV+FG +R KV+F++ +P EIMA+VK+
Sbjct: 272 EGLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKS 331
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
VF+DGLP WDEDRVR+ + YGEI ++ LARNMP+AKRKDFGFV F TH+AA+ C + +
Sbjct: 332 VFIDGLPPYWDEDRVRKHFQGYGEIKRVTLARNMPAAKRKDFGFVDFMTHEAAIACIEDV 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKG-KHASRGDFRSGRGTGRATRGSWGLPSP 489
N +L +G++K KVRARLS PL + + K RG FR GR GR S G P P
Sbjct: 392 NKKDLVDGNSKIKVRARLSNPLPKMQAVKGGMRGGFRIGRPNGR----SLGRPGP 442
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 358 bits (918), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 282/426 (66%), Gaps = 9/426 (2%)
Query: 82 ESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEE 141
E ++E D + + E E + E GV + + + VG + ++ D+ E
Sbjct: 33 EPIEEVNADAEVLESEKESENQAENMDGVQKLENTNDKKPENIVGGQIEKADEAAQLNEN 92
Query: 142 EDDLAEGEMEDVPEEHG---QGEEEVENAGEEAERPEM--VDAEEHDHHEMFQERRKRKE 196
+ ++EG M+D +E G GEE++ + + +M ++ E +D +ER+ +KE
Sbjct: 93 DAPMSEG-MDDYGDEEGFVEPGEEDLRDDDDPETTDDMKVLNEENNDLAAAAKERKIKKE 151
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
E+F+GGLD +VV +DL+ F +VGEV EVRL+ + T KN+G F+RFAT +QA++A++
Sbjct: 152 HEIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALS 211
Query: 257 ELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
E+KNPVI+GK+CG S+D+DTLF+GNIC TWTKEA+ +KLK Y ++ VE++TLV+D +
Sbjct: 212 EMKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRH 271
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVSFADSFIDPGDEIMAQVKT 375
EG++RGF F++F+ DAM AFKRLQK DV+FG +R KV+F++ +P EIMA+VK+
Sbjct: 272 EGLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKS 331
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
VF+DGLP WDEDRVR+ + YGEI ++ LARNMP+AKRKDFGFV F TH+AA+ C I
Sbjct: 332 VFIDGLPPYWDEDRVRKHFQGYGEIERVTLARNMPAAKRKDFGFVDFLTHEAAIACIDDI 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKG-KHASRGDFRSGRGTGRAT-RGSWGLPSPRSLP 493
N +L +G++K KVRARLS PL + + K RG FR GR GR+ R + P
Sbjct: 392 NKKDLVDGNSKIKVRARLSNPLPKMQAVKGGMRGGFRIGRPNGRSLGRPGPLINRPNFQY 451
Query: 494 GRSARG 499
GR++RG
Sbjct: 452 GRASRG 457
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/291 (58%), Positives = 222/291 (76%), Gaps = 2/291 (0%)
Query: 187 MFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
+ +ER+ K E+FVGGLD+D +D++KVF ++GEV EVRL N + KNKG+AF++FA
Sbjct: 316 IAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFA 375
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
E A +A++E+KNPVI GK+CG PS+D++TLFLGNIC TWTKEA+K+KLK YG++ V
Sbjct: 376 NKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVG 435
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVSFADSFIDP 365
++TLV + +EG++RGFAFLEFS +DAM A+KRLQK DV+FG +R AKV+FA+ +P
Sbjct: 436 NITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREP 495
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
EIMAQVK+VFVDGLP WDEDRVRE K YGEI +I LARNM +AKRKDFGFV F TH
Sbjct: 496 DPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTH 555
Query: 426 DAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKG-KHASRGDFRSGRG 475
+AA++C S+NN EL +G++K KV+ RLS PL + + K G FR G G
Sbjct: 556 EAALSCIDSVNNTELCDGNSKTKVKVRLSNPLPKTQAVKGGLCGGFRIGHG 606
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/291 (58%), Positives = 222/291 (76%), Gaps = 2/291 (0%)
Query: 187 MFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
+ +ER+ K E+FVGGLD+D +D++KVF ++GEV EVRL N + KNKG+AF++FA
Sbjct: 316 IAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFA 375
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
E A +A++E+KNPVI GK+CG PS+D++TLFLGNIC TWTKEA+K+KLK YG++ V
Sbjct: 376 NKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVG 435
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVSFADSFIDP 365
++TLV + +EG++RGFAFLEFS +DAM A+KRLQK DV+FG +R AKV+FA+ +P
Sbjct: 436 NITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREP 495
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
EIMAQVK+VFVDGLP WDEDRVRE K YGEI +I LARNM +AKRKDFGFV F TH
Sbjct: 496 DPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTH 555
Query: 426 DAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKG-KHASRGDFRSGRG 475
+AA++C S+NN EL +G++K KV+ RLS PL + + K G FR G G
Sbjct: 556 EAALSCIDSVNNTELCDGNSKTKVKVRLSNPLPKTQAVKGGLCGGFRIGHG 606
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 164/270 (60%), Positives = 214/270 (79%), Gaps = 1/270 (0%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
+ER+ +KE+E+FVGGLD+D +DLRKVF ++GEV EVRL N T +NKG+AF++FA
Sbjct: 18 KERKIKKEYEIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFANK 77
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
++A++E+KNPVI GK+CG PS+D+DTLFLGNIC TWTKEA+++KLK YGV+ VE++
Sbjct: 78 GHVKRALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENI 137
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV-DRPAKVSFADSFIDPGD 367
T+V D+ +EG +RGFAFLEF+ +DAM A+KRLQK DV+FG +R AKV+F++ +P
Sbjct: 138 TVVPDAQHEGRSRGFAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPIREPDP 197
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
EIMAQVKT+F+DGLP WDED VRE +K YGEI +I LARNM +AKRKDFGFV F TH+A
Sbjct: 198 EIMAQVKTIFLDGLPPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDFSTHEA 257
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPL 457
AV C + INN E G G+ K +V+ARLS PL
Sbjct: 258 AVACIEGINNREFGNGNTKMRVKARLSNPL 287
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 202/418 (48%), Positives = 261/418 (62%), Gaps = 36/418 (8%)
Query: 114 DKETEHEDVQEV-------------GNEEDEHDDENVGEEEEDDLAEGEMED------VP 154
D E E ED QEV E + +D EE+D A + ++
Sbjct: 152 DAEQEEEDPQEVIFEDSASVGEGQAATELKQGEDRARATEEDDGQAAAKSKNEEHRARAA 211
Query: 155 EEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLR 214
E+HGQ EV+ E ER M D M + R+++KE E+FVGGLD++ V +D+R
Sbjct: 212 EKHGQAAGEVKE--NEDERKVMSD--------MAKNRQRKKELEIFVGGLDREAVEEDIR 261
Query: 215 KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
KVFSQVG+V EVRL + T KNKGFAF+RFA EQ +A+ E+KNP+I+GK+CGV S+
Sbjct: 262 KVFSQVGDVVEVRLHKDFSTSKNKGFAFVRFANKEQVARALAEMKNPMIHGKRCGVAASE 321
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
D+DTLFL NIC TWTKEA+K++L YGV+ V+ LTLV D+ NEG +RGFAFLEFS +DA
Sbjct: 322 DNDTLFLCNICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNEGQSRGFAFLEFSCHADA 381
Query: 335 MDAFKRLQKRDVLFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVREL 393
M AFKRLQ+ D LFG +R AKV+FA+ + E+MAQVK+VF++GLP WDE+RV+
Sbjct: 382 MLAFKRLQQPDALFGHPERTAKVAFAEPIKEADAEVMAQVKSVFINGLPPYWDEERVKNR 441
Query: 394 LKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-EGDNKAKVRAR 452
K YG I ++ LARNM SAKR DFGFV F TH+ A+ C ++ NN ELG +G K KVR R
Sbjct: 442 FKAYGLIERVVLARNMSSAKRNDFGFVNFSTHEEALACIEATNNTELGDDGKAKLKVRVR 501
Query: 453 LSRPLQRGKG-KHASRGDFRSGR---GTGRATRG-SWGLPSPRSLPGRSARGIGSRLP 505
LS PL + + K G FR G G R RG + G +PR RG + P
Sbjct: 502 LSNPLPKSQAVKGEMSGGFRIGHPGSGFNRPGRGFNRGRAAPRREGFHGDRGFSNHTP 559
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 345 bits (884), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 180/349 (51%), Positives = 242/349 (69%), Gaps = 8/349 (2%)
Query: 159 QGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFS 218
+G+ ++ GE+ +R + + E +M + R+ +KE E+FVGGL++D V +D+R VF
Sbjct: 474 EGQAAAQDTGEK-DRARVEEHERMVMSDMAKNRQLKKELEIFVGGLNRDAVEEDIRSVFG 532
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
QVG+V +VRL + T +NKGFAF++FAT EQ +A+ E+KNP+I GK+CG+ S+D+DT
Sbjct: 533 QVGDVVDVRLHKDLLTNRNKGFAFVKFATKEQVSRALAEMKNPMIRGKRCGIAASEDNDT 592
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LFLGNIC TWTKEA+K++L YG++ V+ LTLV D+ NEG +RGFAFLEFS +DAM AF
Sbjct: 593 LFLGNICNTWTKEAIKKRLLDYGIEGVQSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAF 652
Query: 339 KRLQKRDVLFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
KRLQ+ D +FG +R AKV+FA+ +P E+MAQVK+VF+DGLP WDEDRV++ K Y
Sbjct: 653 KRLQQPDAMFGHPERTAKVAFAEPIKEPDAEVMAQVKSVFIDGLPPYWDEDRVKDRFKAY 712
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-EGDNKAKVRARLSRP 456
G I ++ LA NM SAKR DFGFV F TH+AA+ C ++ NN ELG +G +K KVR RLS P
Sbjct: 713 GVIERVVLASNMSSAKRNDFGFVNFSTHEAALACIEATNNTELGDDGKSKVKVRVRLSNP 772
Query: 457 LQRGKG-KHASRGDFR---SGRGTGRATRG-SWGLPSPRSLPGRSARGI 500
L + + K G FR SG G R RG S G +PR RG
Sbjct: 773 LPKSQAVKGGMTGGFRIGYSGFGFNRPGRGFSKGRSAPRRAGFHGGRGF 821
>gi|413919105|gb|AFW59037.1| hypothetical protein ZEAMMB73_952837 [Zea mays]
gi|413919106|gb|AFW59038.1| hypothetical protein ZEAMMB73_952837 [Zea mays]
Length = 381
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 207/354 (58%), Positives = 242/354 (68%), Gaps = 11/354 (3%)
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
+ K+ LARNMP+AKRKDFGFVTFDTHD AV CA+ I+N+E+GEGD+KAKVRARLSRPLQR
Sbjct: 1 MEKLGLARNMPAAKRKDFGFVTFDTHDNAVACAEGISNSEIGEGDHKAKVRARLSRPLQR 60
Query: 460 -GKGKHASRGDFRSGRGTGRATRGSW-GLPSPRSLPGRSARGIGSRLPPA---SVKRPVP 514
+ KH RG+FR G G R R + P PR P R R GSRLPP +KRP+
Sbjct: 61 PPRMKHGLRGNFRVGHGAPRGGRLQYARAPPPRRPPPRLVRPAGSRLPPIRSHPLKRPIY 120
Query: 515 VRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDY 574
+RDRRP M M RAR + PP RSYDRR P P Y K +REYGRRDE+PPPRSRA +DY
Sbjct: 121 IRDRRPAMPMLDRARRL-PPSGRSYDRRPPAPVYLKKSPRREYGRRDELPPPRSRAMIDY 179
Query: 575 GSRVVPDRRP-YRDEYTSRGSGYPDM-PRSTSRGAARRPYVDDGYAQRFERPPPSYREGR 632
RV DRRP RD+Y RGSGY D+ P S + RR Y DD Y +F+RP P YREGR
Sbjct: 180 SPRVPVDRRPSLRDDYLPRGSGYSDLGPHSAPHLSDRRAYADDSYGGKFDRPLPVYREGR 239
Query: 633 ARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNL 692
DY+TVSGSKRPY+ +DD PRY + GVR S+ARLDYD+GG + +YGD Y +R GR +
Sbjct: 240 GHDYDTVSGSKRPYADMDDA-PRYQEIGVRQSKARLDYDIGGSSARYGDTYNERPGRPHA 298
Query: 693 GYGGSRSSISSQDSHGLYSSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDV 746
GY SRS ++G SSR GM YGGS S D GGMY SY Y RGSDV
Sbjct: 299 GYSSSRSIPGHDSAYG--SSRNGMSYGGSASSADAGGMYPPSYSGSYGSRGSDV 350
>gi|219363109|ref|NP_001136652.1| uncharacterized protein LOC100216781 [Zea mays]
gi|194696514|gb|ACF82341.1| unknown [Zea mays]
Length = 372
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 202/345 (58%), Positives = 235/345 (68%), Gaps = 11/345 (3%)
Query: 409 MPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR-GKGKHASR 467
MP+AKRKDFGFVTFDTHD AV CA+ I+N+E+GEGD+KAKVRARLSRPLQR + KH R
Sbjct: 1 MPAAKRKDFGFVTFDTHDNAVACAEGISNSEIGEGDHKAKVRARLSRPLQRPPRMKHGLR 60
Query: 468 GDFRSGRGTGRATRGSW-GLPSPRSLPGRSARGIGSRLPPA---SVKRPVPVRDRRPIMS 523
G+FR G G R R + P PR P R R GSRLPP +KRP+ +RDRRP M
Sbjct: 61 GNFRVGHGAPRGGRLQYARAPPPRRPPPRLVRPAGSRLPPIRSHPLKRPIYIRDRRPAMP 120
Query: 524 MTARARPMPPPPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRR 583
M RAR + PP RSYDRR P P Y K +REYGRRDE+PPPRSRA +DY RV DRR
Sbjct: 121 MLDRARRL-PPSGRSYDRRPPAPVYLKKSPRREYGRRDELPPPRSRAMIDYSPRVPVDRR 179
Query: 584 P-YRDEYTSRGSGYPDM-PRSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSG 641
P RD+Y RGSGY D+ P S + RR Y DD Y +F+RP P YREGR DY+TVSG
Sbjct: 180 PSLRDDYLPRGSGYSDLGPHSAPHLSDRRAYADDSYGGKFDRPLPVYREGRGHDYDTVSG 239
Query: 642 SKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSI 701
SKRPY+ +DD PRY + GVR S+ARLDYD+GG + +YGD Y +R GR + GY SRS
Sbjct: 240 SKRPYADMDDA-PRYQEIGVRQSKARLDYDIGGSSARYGDTYNERPGRPHAGYSSSRSIP 298
Query: 702 SSQDSHGLYSSRQGMGYGGSYSGGDVGGMYSSSYGSDYMPRGSDV 746
++G SSR GM YGGS S D GGMY SY Y RGSDV
Sbjct: 299 GHDSAYG--SSRNGMSYGGSASSADAGGMYPPSYSGSYGSRGSDV 341
>gi|116781130|gb|ABK21976.1| unknown [Picea sitchensis]
Length = 219
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 140/185 (75%), Positives = 168/185 (90%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
+ERRKRKEFEVFVGGLDKD +DLRKVFS+VGEV E+RLMMN QT+KNKGFAF+R+ATV
Sbjct: 27 KERRKRKEFEVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATV 86
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
EQA++A TELKNP +NGK CG++PSQD+DTLFLGNICKTWTKEAL+EKLK + +DN+EDL
Sbjct: 87 EQAKRACTELKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDL 146
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDE 368
TLVED NEGMNRG AF+EFS+RSDAM+A+KRLQKRDV+ G DR AKVSFA++F+DP +E
Sbjct: 147 TLVEDPENEGMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTDRTAKVSFAETFVDPDEE 206
Query: 369 IMAQV 373
+MAQ+
Sbjct: 207 VMAQI 211
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 191/258 (74%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
ERRK K+ EVFVGGLDK+ ++L VF +VG+V EVRLM N QT KNKG+AF+RFA+
Sbjct: 11 ERRKHKKLEVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYAFIRFASAA 70
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
A++A +L+ I G+ CGV PS+++DTLFLGNI K W KE + E LK + ++NVED+T
Sbjct: 71 IAKRASHDLERVEIRGRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKFAIENVEDIT 130
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
L+ED EG+NRGFAF+EF++ +A++AF+RLQ+ D +FG DR AK+++A +P ++I
Sbjct: 131 LMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQADAVFGTDRSAKIAWAQPLNEPDEDI 190
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
M+QVK+VFVDG+P +WDE +V+EL YG + +I LARNM SAKRKDFGFV + DAA+
Sbjct: 191 MSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGFVNYVERDAAL 250
Query: 430 TCAKSINNAELGEGDNKA 447
C ++NN E+ D K
Sbjct: 251 LCIDALNNTEISYEDIKV 268
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/301 (48%), Positives = 208/301 (69%), Gaps = 1/301 (0%)
Query: 148 GEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM-FQERRKRKEFEVFVGGLDK 206
G +E+ E+H + ++ +E+ E VD + H + +RRK K EV+VGGLDK
Sbjct: 6 GGIEERYEDHDEDKDGYLEGSKESLSGEAVDYDAEAQHPLPLSDRRKHKRLEVYVGGLDK 65
Query: 207 DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK 266
D +DL+ +F + GEV E+RLM NPQT KNKGFAF+R+A+ A++A + + I G+
Sbjct: 66 DTTEEDLKSLFKKAGEVIEIRLMRNPQTGKNKGFAFIRYASAAMAKRATEDFETVEIRGR 125
Query: 267 QCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326
QC PS+++DTL LGNI K+W KE + E LK ++++E+LTL+ED EG+NRGFAF+
Sbjct: 126 QCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLSIESIEELTLMEDPQVEGVNRGFAFI 185
Query: 327 EFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWD 386
EFS+ DA+DAF++LQ+ D +FG +R AKV++A +P ++ M+QVK+VFVDG+P +W+
Sbjct: 186 EFSTHKDALDAFRKLQQPDAIFGTERSAKVAWAQPLYEPDEDTMSQVKSVFVDGMPLTWE 245
Query: 387 EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446
E VRE YGEI +I LARNM SAKRKDFGFV + +AA+TC ++NN E+ +GD K
Sbjct: 246 EGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAALTCIDALNNTEIIDGDMK 305
Query: 447 A 447
Sbjct: 306 V 306
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/267 (52%), Positives = 190/267 (71%)
Query: 181 EHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
E H F ERRK K EV+VGGLDKD +DL+ +F + GEV EVRLM NPQT KN+G+
Sbjct: 36 EAQHSLPFSERRKYKRLEVYVGGLDKDTTEEDLKPLFEKAGEVVEVRLMRNPQTGKNRGY 95
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY 300
AF+R+++ A++A EL I G++C PS+++DTL LGNI K+W KE + E LK
Sbjct: 96 AFVRYSSAAMAKRAAEELGTIEIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSL 155
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
++ +E+LTL+ED EG+NRGFAF+EFS+ DA++AF++LQ+ D +FG DR AKV++A
Sbjct: 156 CIERIEELTLMEDPQVEGLNRGFAFIEFSTHKDALEAFRKLQQPDAIFGADRSAKVAWAQ 215
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+P ++ M+QVK+VFVDG+P +W+E VRE YGEI +I LARNM SAKRKDFGFV
Sbjct: 216 PLYEPDEDTMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFV 275
Query: 421 TFDTHDAAVTCAKSINNAELGEGDNKA 447
F DAA+ C ++NN E+ +GD K
Sbjct: 276 NFVERDAALACIDALNNTEIIDGDIKV 302
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 281 bits (720), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 167/374 (44%), Positives = 229/374 (61%), Gaps = 15/374 (4%)
Query: 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-QTKKNKGFAFLRFATVE 249
R++RKE+EVFV GL ++ + DD+ ++ GEV EVRL+ +P Q + NKGFAF RFA V
Sbjct: 96 RKRRKEYEVFVFGLPREAMEDDVAAALTEAGEVEEVRLVRDPAQPQLNKGFAFARFAEVW 155
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
QAR A +L+ +I GK CG+ + D++TL L NIC W+KE L EKLK + ++N+ED+
Sbjct: 156 QARWAANDLRTAMIKGKACGICKNNDNETLHLRNICFDWSKEDLAEKLKTFELENLEDIN 215
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
L+E + +G NRG+AFL+FSS DA+ F +LQKRD+ G D A++SF+++ I D++
Sbjct: 216 LIEHPDRKGRNRGYAFLDFSSHVDAVAGFLKLQKRDLFLGTDVRAQISFSNT-ISQDDKV 274
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
M +VK+VF+DGLP WDED VRE +GEI I+LARNM +AKRKDFGF++F T AA+
Sbjct: 275 MEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAAL 334
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRG-SWGLPS 488
C +N GEG K +++A L RP K K + +GD G R G S+G
Sbjct: 335 GCIDMVNKGRFGEGSGKIRMKATLQRPKPTFK-KPSWQGDTHM-LGVRRGFIGKSYGDRE 392
Query: 489 PRSLPGRSARGIGSRLPPASVK---RPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPV 545
P P R R +G P S R P+ R P M++ RP+ RSY RR
Sbjct: 393 PH--PNR-FRHLGPERRPYSNHSNYRHQPMVGRLPPMAVDDGERPVSGREYRSYYRRD-- 447
Query: 546 PSYPKPGLKREYGR 559
+ P P K YGR
Sbjct: 448 STVPDPSHK--YGR 459
>gi|224136398|ref|XP_002326850.1| predicted protein [Populus trichocarpa]
gi|222835165|gb|EEE73600.1| predicted protein [Populus trichocarpa]
Length = 242
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/232 (70%), Positives = 188/232 (81%), Gaps = 2/232 (0%)
Query: 545 VPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRP-YRDEYTSRGSGYPDMPRST 603
PSYPK KREY R +E+P PRSR VDYG R VP+RRP YR++Y+SRG+ Y D+PRST
Sbjct: 12 APSYPKGSFKREYVRHEELPSPRSRPAVDYGPRSVPERRPSYREDYSSRGTSYSDLPRST 71
Query: 604 SRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRH 663
SR +ARR Y DDGY QR+ERPPPSY EGR+RDY++V+GSKRPYS +DD+PPRYAD G RH
Sbjct: 72 SRTSARRAYADDGYNQRYERPPPSYHEGRSRDYDSVAGSKRPYSAIDDIPPRYADAGARH 131
Query: 664 SRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGYGGSYS 723
SR RLDY+LG A QYGDAY DR+GRS +GYGGSR+SISSQDSHG+YSSRQGMG G
Sbjct: 132 SRPRLDYELGSRASQYGDAYSDRLGRSAVGYGGSRNSISSQDSHGMYSSRQGMG-YGGSY 190
Query: 724 GGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGVGGSSYMGSGGSGSYY 775
GG GGMY SSY DYM RG DVGGSSYSSMY RG+G S+YMG+G SGSYY
Sbjct: 191 GGSDGGMYQSSYSGDYMSRGGDVGGSSYSSMYSSRGMGSSNYMGTGSSGSYY 242
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 212/323 (65%), Gaps = 5/323 (1%)
Query: 142 EDDLAEGEMEDVPEEHGQGEEEVENA--GEEAERPEMVDAEEHDHHEM-FQERRKRKEFE 198
+D E E E++ G+ +EEVEN G E E+ D+ EM ER+KR++ E
Sbjct: 274 KDQKGESENENM-NPQGEMKEEVENCDGGGTKEVAEVEDSMAVLSEEMEALERQKRRKTE 332
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+GGLDK +D+RKVF +VGEV EVRLMMN +T KNKG+AFLRFA A++A+ +
Sbjct: 333 IFIGGLDKSAREEDIRKVFEEVGEVLEVRLMMNSKTGKNKGYAFLRFALASDAKRALAKY 392
Query: 259 KNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG 318
I GKQCG P + +DT+FLGNI K W E + + L+ G+D ++ +T++ D +N
Sbjct: 393 PKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIE 452
Query: 319 MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFV 378
NRGFAFLE + DA A+K+LQK+DV FG + KV++A+ +P ++ M +VKTV+
Sbjct: 453 RNRGFAFLELETNKDAQLAYKKLQKKDV-FGKHQNIKVAWAEPLNEPDEDEMLKVKTVYA 511
Query: 379 DGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438
+ +P+SW+E++VR+ K +GEI + LARN+ S+KRKDF FV + T +AA+ C +S +
Sbjct: 512 EYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFSRE 571
Query: 439 ELGEGDNKAKVRARLSRPLQRGK 461
L + + K KV+ L++P+ +GK
Sbjct: 572 PLHDAECKVKVKVSLAKPIPKGK 594
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/294 (41%), Positives = 186/294 (63%), Gaps = 2/294 (0%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
ERRKR EVFVGGL +D DD+R VF++ GE+TEVR++MNP KNKG+ F+R+
Sbjct: 227 MSERRKRMTMEVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRH 286
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
QA++A+ E N I GK C +D +FLGNI K W KE + ++LK G++N++
Sbjct: 287 AAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDS 346
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+TL DSNN NRGFAFLE + DA A+K+L +++ FG +V++A+ DP D
Sbjct: 347 VTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNA-FGKGLNIRVAWAEPLNDP-D 404
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
E QVK++FVDG+P SWD +++E+ K +G+I + L+R+MPSAKR+DF F+ + T +A
Sbjct: 405 EKDMQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREA 464
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATR 481
A++C +S + E + +K ++ L++P Q+ K +G G + ++
Sbjct: 465 AISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQTKEDHKSSITGEGKMKTSK 518
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 122/294 (41%), Positives = 186/294 (63%), Gaps = 2/294 (0%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
ERRKR EVFVGGL +D DD+R VF++ GE+TEVR++MNP KNKG+ F+R+
Sbjct: 227 MSERRKRMTMEVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRH 286
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
QA++A+ E N I GK C +D +FLGNI K W KE + ++LK G++N++
Sbjct: 287 AAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDS 346
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+TL DSNN NRGFAFLE + DA A+K+L +++ FG +V++A+ DP D
Sbjct: 347 VTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNA-FGKGLNIRVAWAEPLNDP-D 404
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
E QVK++FVDG+P SWD +++E+ K +G+I + L+R+MPSAKR+DF F+ + T +A
Sbjct: 405 EKDMQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREA 464
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATR 481
A++C +S + E + +K ++ L++P Q+ K +G G + ++
Sbjct: 465 AISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQTKEDHKSSITGEGKMKTSK 518
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 180/272 (66%), Gaps = 2/272 (0%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
ERRKR EVFVGGL +D DD+R VF++ GE+TEVR++MNP KNKG+ F+R+
Sbjct: 3 ERRKRMTMEVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAA 62
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
QA++A+ E N I GK C +D +FLGNI K W KE + ++LK G++N++ +T
Sbjct: 63 QAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVT 122
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
L DSNN NRGFAFLE + DA A+K+L +++ FG +V++A+ DP DE
Sbjct: 123 LKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNA-FGKGLNIRVAWAEPLNDP-DEK 180
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
QVK++FVDG+P SWD +++E+ K +G+I + L+R+MPSAKR+DF F+ + T +AA+
Sbjct: 181 DMQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAI 240
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRPLQRGK 461
+C +S + E + +K ++ L++P Q+ K
Sbjct: 241 SCLESFDKEEFSKNGSKVNIKVSLAKPAQQSK 272
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 182/269 (67%), Gaps = 2/269 (0%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK-NKGFAFLRFAT 247
+ R+KR ++EVFV GL +D +D+ + + G++ EVRL+ +P ++ NKGFAF+RFA
Sbjct: 102 KRRKKRVDYEVFVSGLPQDAAEEDVAQALADAGDIEEVRLVRDPADQRLNKGFAFVRFAA 161
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
QAR A +L+ I GK CG+ + +++TL L NIC W+K+ L EKLK + ++N++
Sbjct: 162 AWQARWAANDLREATIKGKACGICKNSETETLHLRNICFDWSKDDLAEKLKPFKLENLDR 221
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+ L+E + +G NRG+AFL+F + DA++AF +LQK D+ G D A +SF+++ + D
Sbjct: 222 INLIEHPDRKGKNRGYAFLDFRTHVDAVEAFVKLQKIDLYLGTDSRANISFSNT-LSQDD 280
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
EIM +VK+VF+DG+P WDED+VRE+ +GEI I+LARNM +A RKDFGF+ F +
Sbjct: 281 EIMEKVKSVFLDGVPPHWDEDKVREIFGKFGEIDSIQLARNMFTAARKDFGFIGFTARQS 340
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRP 456
A+ C K +N +GEG K ++A L RP
Sbjct: 341 ALDCIKMVNKDGVGEGSGKVPIKASLQRP 369
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/279 (45%), Positives = 185/279 (66%), Gaps = 3/279 (1%)
Query: 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVE 249
RRKRK+ EV VGGL +D +D+ + + G+V EVRL+ +P + NKGFAF+RFA
Sbjct: 84 RRKRKDCEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAW 143
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
QAR A +++ ++ G+ C + + ++TL L NIC WTK+ L E+LK Y ++N+ED+
Sbjct: 144 QARWAADDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDIN 203
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
LVED +G NRG+AFL+F + D +DAF +LQ RD+ G D A+VSF+ + + D+I
Sbjct: 204 LVEDPERKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKT-LSLDDKI 262
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
M +VK+VF+DGLP WDED+VRE+ +GEI I LARNM AKRKDFGF+ F + +A+
Sbjct: 263 MEKVKSVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSAL 322
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRG 468
C +++ + EG K +++A L RP K KH+ +G
Sbjct: 323 DCISTVSKGGIVEGSGKVRIKASLQRPRPTLK-KHSWQG 360
>gi|224060419|ref|XP_002300190.1| predicted protein [Populus trichocarpa]
gi|222847448|gb|EEE84995.1| predicted protein [Populus trichocarpa]
Length = 689
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 176/266 (66%), Gaps = 3/266 (1%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
R+ F+VFVGGLDK +DLRKVF V EVT+VRL + ++KK AFL FATVE A
Sbjct: 66 RQDLRFKVFVGGLDKYAKEEDLRKVFGGVEEVTKVRLSWDSESKKR--VAFLTFATVELA 123
Query: 252 RQAVTELKNPVINGKQCGVTPSQD-SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
R+A+ E+ +PVINGK+C QD S TL++ NICK WTK+ L++KL YGV N E LTL
Sbjct: 124 RRAICEISDPVINGKRCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEILTL 183
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
N+ NRG+A L+F S DA +A + L+K +V FG +R AK F+ + DEIM
Sbjct: 184 NPARENKEKNRGYAHLDFRSGKDASEALELLKKENVSFGQNRAAKADFSRKYASGNDEIM 243
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
+ VK V++DG+P +W E+ V++ LK +G I K+ELAR++PSA R ++ +VTF+TH+AA T
Sbjct: 244 SHVKRVYLDGIPRAWREEHVKKHLKEFGRIVKVELARHIPSAIRTNYCYVTFETHEAAAT 303
Query: 431 CAKSINNAELGEGDNKAKVRARLSRP 456
C +N L D + A L++P
Sbjct: 304 CVNGVNVDGLYFRDKRVNAWADLAKP 329
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/279 (45%), Positives = 185/279 (66%), Gaps = 3/279 (1%)
Query: 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVE 249
RRKRK+ EV VGGL +D +D+ + + G+V EVRL+ +P + NKGFAF+RFA
Sbjct: 84 RRKRKDCEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAW 143
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
QAR A +++ ++ G+ C + + ++TL L NIC WTK+ L E+LK Y ++N+ED+
Sbjct: 144 QARWAADDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDIN 203
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
LVED +G NRG+AFL+F + D +DAF +LQ RD+ G D A+VSF+ + + D+I
Sbjct: 204 LVEDPERKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKT-LSLDDKI 262
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
M +VK+VF+DGLP WDED+VRE+ +GEI I LARNM AKRKDFGF+ F + +A+
Sbjct: 263 MEKVKSVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSAL 322
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRG 468
C +++ + EG K +++A L RP K KH+ +G
Sbjct: 323 DCISTVSKGGIVEGSGKVRIKASLQRPRPTLK-KHSWQG 360
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 169/251 (67%), Gaps = 2/251 (0%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
ERRK+ EVFVGGL +D DD+R VF++ GE+TEVR++MNP KNKG+ F+R+
Sbjct: 3 ERRKKMTMEVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAA 62
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
QA++A+ E N I GK C +D +FLGNI K W KE + ++LK G++N++ +T
Sbjct: 63 QAKKAIAEFGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVT 122
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
L DSNN NRGFAFLE + DA A+K+L +++ FG +V++A+ DP DE
Sbjct: 123 LKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNA-FGKSLNIRVAWAEPLNDP-DEK 180
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
AQVK++FVDG+P SWD +++E+ K +G+I + L+R+MPSAKR+DF F+ + T +AA+
Sbjct: 181 DAQVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAI 240
Query: 430 TCAKSINNAEL 440
+C +S + E
Sbjct: 241 SCLESFDKEEF 251
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 171/288 (59%), Gaps = 44/288 (15%)
Query: 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-QTKKNKGFAFLRFATVE 249
R+KRKE+EVFV GL + V +++ ++ GEV EVRL+ +P + + NKGFAF+RFA V
Sbjct: 104 RKKRKEYEVFVFGLPPEAVEENVAGALAEAGEVEEVRLVRDPAEPQLNKGFAFVRFAEVW 163
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTL---------------------FLGNICKTW 288
QAR A +L+ I GK CG+ + D++TL L
Sbjct: 164 QARWAADDLRTAKIKGKACGICKNNDNETLHLRNICFDWSKDDLAENLKTFEL------- 216
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348
+N+ED+ L+E + +G NRG+AFL+FSS DA+ F +LQKRD+
Sbjct: 217 --------------ENLEDINLIEHPDRKGKNRGYAFLDFSSHVDAVAGFLKLQKRDLYL 262
Query: 349 GVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN 408
G D A++SF+++ I D++M +VK+VF+DGLP WDED VRE +GEI I+LARN
Sbjct: 263 GTDIKAQISFSNT-ISQDDKVMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARN 321
Query: 409 MPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
M +AKRKDFGF++F T AA+ C +N GEG K +++A L RP
Sbjct: 322 MFTAKRKDFGFISFTTRQAAIDCIDMVNKGRFGEGSGKVRMKATLQRP 369
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 171/264 (64%), Gaps = 2/264 (0%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+GGL D +D+RKVF VGE+ E+RL+ N +T KNK FAFLR+++ A++A+ +
Sbjct: 500 EIFIGGLSTDAREEDIRKVFGAVGEIVELRLVTNSKTGKNKRFAFLRYSSAADAKKALEK 559
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
I GKQC V P + +DT+FLGNI K WT + + L+ G++ ++ + ++ D +N
Sbjct: 560 YAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIVMTDPSNV 619
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
G NRGFAF+E + DA AFK+L K+D G + KV++A+ +P +E + +VK+V+
Sbjct: 620 GRNRGFAFVELETHKDAQIAFKKLHKKD--LGKLQNIKVAWAEPLSEPDEEELLKVKSVY 677
Query: 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437
+ LP SWDE+++R +GEI I L+RN+ S++RKDF F+ F T +AA+ C +S +
Sbjct: 678 AEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALACIESFYH 737
Query: 438 AELGEGDNKAKVRARLSRPLQRGK 461
L ++ V+ L++P+ +GK
Sbjct: 738 ETLTNEGSQVNVKVSLAKPIPKGK 761
>gi|3341692|gb|AAC27474.1| unknown protein [Arabidopsis thaliana]
Length = 239
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 156/200 (78%), Gaps = 6/200 (3%)
Query: 545 VPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRR-PYRDEYTSRGSGYPDMPRST 603
VP YPK LKR+Y RRDE+PPPRSR V Y SR+ P+R YRD+Y RGSGY D+PRS+
Sbjct: 13 VPLYPKASLKRDYDRRDELPPPRSRPAVSYSSRLSPERHLSYRDDYPPRGSGYSDLPRSS 72
Query: 604 SRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRH 663
SR RRP+VDD Y+ RFERPP SY EGR R YE + GSKRPY+ +DD+PPRYAD VRH
Sbjct: 73 SRSEIRRPFVDDLYSPRFERPP-SYSEGRPRAYEPLPGSKRPYAALDDLPPRYADVDVRH 131
Query: 664 SRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGY-GGSY 722
SR RLDYD+G QYG++YGDR+ RS+LGYG SR+S+S+ DS G YSSRQGM Y GGSY
Sbjct: 132 SRPRLDYDVGPS--QYGESYGDRIPRSSLGYGSSRNSMSNHDSRGPYSSRQGMDYGGGSY 189
Query: 723 SGGDVGGMYSSSYGSDYMPR 742
SG DVGGMYSSSYG D +PR
Sbjct: 190 SGSDVGGMYSSSYGGD-LPR 208
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 156/232 (67%), Gaps = 1/232 (0%)
Query: 230 MNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWT 289
MN +T KNKG+AFLRFA A++A+ + I GKQCG P + +DT+FLGNI K W
Sbjct: 1 MNSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWK 60
Query: 290 KEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
E + + L+ G+D ++ +T++ D +N NRGFAFLE + DA A+K+LQK+DV FG
Sbjct: 61 NEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDV-FG 119
Query: 350 VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
+ KV++A+ +P ++ M +VKTV+ + +P+SW+E++VR+ K +GEI + LARN+
Sbjct: 120 KHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNL 179
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGK 461
S+KRKDF FV + T +AA+ C +S + L + + K KV+ L++P+ +GK
Sbjct: 180 RSSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKPIPKGK 231
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 84/161 (52%), Gaps = 19/161 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNP-QTKKNKGFAFLRFATVEQARQAV 255
+F+G +DK+ +D+ K+ ++G ++ +V +M++P ++N+GFAFL T + A+ A
Sbjct: 50 IFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAY 109
Query: 256 TELKNPVINGKQCGVT---------PSQDS----DTLFLGNICKTWTKEALKEKLKHYGV 302
+L+ + GK + P +D T++ I +W +E +++ K +G
Sbjct: 110 KKLQKKDVFGKHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFG- 168
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343
+E + L + + + FAF+++++R A++ + +
Sbjct: 169 -EIESVVLARNLRS-SKRKDFAFVKYTTREAALECIESFSR 207
>gi|242043858|ref|XP_002459800.1| hypothetical protein SORBIDRAFT_02g010900 [Sorghum bicolor]
gi|241923177|gb|EER96321.1| hypothetical protein SORBIDRAFT_02g010900 [Sorghum bicolor]
Length = 730
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 178/333 (53%), Gaps = 68/333 (20%)
Query: 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK-NKGFAFLRFATVE 249
R+KR ++EVFV GL +D +D+ K ++ G+V EVRL+ +P ++ NKGFAF+RFA
Sbjct: 107 RKKRIDYEVFVSGLPRDAAEEDVAKALAEAGDVEEVRLVRDPADQRLNKGFAFVRFAAAW 166
Query: 250 QARQAVTELKNPVINGKQCGV-------TPSQD-------------SDTLFL-------- 281
QAR A +L+ ING++ T +D S LF
Sbjct: 167 QARWAANDLREATINGREISFDFALSARTQGKDKWWAAWPASSLARSSALFFTFASSSLA 226
Query: 282 ------------------------GNICKTWTKEALK--------------EKLKHYGVD 303
ICK E L EKL+ + ++
Sbjct: 227 SYQAGLSQVTFIYWYLNFQIKGKACGICKNSENETLHVRNICFDWSKDDLAEKLEPFKLE 286
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI 363
N++ + L+E +G NRG+AFL+F + DA+ AF +LQKRD+ G D A +SF+++ +
Sbjct: 287 NLDRINLIEHPEKKGKNRGYAFLDFRTHVDAVAAFVKLQKRDLYLGTDFRAHISFSNT-L 345
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
DEIM +VK+VF+DGLP WDED+VRE+ +GEI I+LARNM +AKRKDFGF+ F
Sbjct: 346 SQDDEIMEKVKSVFLDGLPPHWDEDKVREMFGKFGEIDSIQLARNMYTAKRKDFGFIGFT 405
Query: 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
T +A+ C K +N +GEG K ++A L RP
Sbjct: 406 TRQSALDCIKMVNKDGVGEGSGKVLIKASLQRP 438
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 164/276 (59%), Gaps = 2/276 (0%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
ER++R+ EVFV GLD + +D+R VF GE+T+VR+ M+ +T K+KG+ F+R+
Sbjct: 258 MSERQRRRMTEVFVCGLDGSMKEEDVRSVFGWAGEITQVRMAMDARTWKSKGYCFVRYRE 317
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
QA++ V E I K C V +D + L NI K W KE + + L GV+N++
Sbjct: 318 PSQAKKVVAEFCKWKICWKLCQVEAVDGNDKIVLENIDKKWKKEDIMKLLHKTGVENIDK 377
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+TL+ D +N G N G+AFLE + DA A+ +L ++ V F V++A + D D
Sbjct: 378 VTLMADCDNPGYNCGYAFLELETERDAWMAYIKLSRKGV-FRRCLNITVAWAKAMSD-RD 435
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
E M QVK++FV+G+P SWD ++ E+ YG I + L+ ++ SAKR DF FV + TH+A
Sbjct: 436 EEMQQVKSIFVEGIPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKRSDFAFVHYTTHEA 495
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGK 463
A+ C + + EL +K ++ L +P+++GK K
Sbjct: 496 AILCLELFDKEELTGNGSKVNIKVSLDKPVRKGKQK 531
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVGGL KDV DL F+ VGE+ E+RLM + T ++KG+AF+RF + + A+ AV +
Sbjct: 402 EVFVGGLGKDVNEADLYSAFANVGEIFEIRLMKDATTGESKGYAFVRFTSPKFAKLAVQQ 461
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
+ V+ G++ GV S D+ TLFLG++ K W ++ L + L+ + V +TL++D+ N
Sbjct: 462 VDGAVLKGRKVGVVHSNDNQTLFLGHLDKDWRQDDLDQHLRDAKIKGVTTITLMKDTTNM 521
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
NRGFAF+EFSS +A A ++ K L VD KV +A+ +P +E+M++VK++
Sbjct: 522 ARNRGFAFVEFSSHEEAAKAHAKIMKPGFRLADVD--VKVDWAEPLNEPSEEVMSKVKSI 579
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431
+V LP ++D +R L +GEI +I L++N+ SA+R DF FV + AA+
Sbjct: 580 YVCNLPVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALAA 634
>gi|218195457|gb|EEC77884.1| hypothetical protein OsI_17174 [Oryza sativa Indica Group]
Length = 274
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 128/195 (65%), Gaps = 1/195 (0%)
Query: 262 VINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
++ G+ C + + ++TL L NIC WTK+ L E+LK Y ++N+ED+ LVED +G NR
Sbjct: 1 MVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPERKGKNR 60
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+AFL+F + D +DAF +LQ RD+ G D A+VSF+ + + D+IM +VK+VF+DGL
Sbjct: 61 GYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKT-LSQDDKIMEKVKSVFLDGL 119
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
P WDED+VRE+ +GEI I LARNM AKRKDFGF+ F + +A+ C +++ +
Sbjct: 120 PPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSKGGIV 179
Query: 442 EGDNKAKVRARLSRP 456
EG K + S P
Sbjct: 180 EGSGKGRKLMASSSP 194
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 142/235 (60%), Gaps = 10/235 (4%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTE---------VRLMMNPQTKKNKGFAFLRFATV 248
EVFVGGL +D DD+R+VF+++G++ E +RLM +P+T +KG+AF+R+
Sbjct: 258 EVFVGGLHRDATEDDVREVFAKIGDIYEASTIFPPARLRLMRDPKTGASKGYAFVRYMEP 317
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
A A +L +I G+ GV SQD+ +LF+G+I + W+ E L+ LK G+ V+ +
Sbjct: 318 TFAELAADQLSGYLIMGRPVGVLVSQDNQSLFVGHISQDWSLEQLEAHLKEAGIRGVDHI 377
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDE 368
D N NRGF F+EF S +A A ++ + D + +V +A+ +PG++
Sbjct: 378 IFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRADFRLSGQK-VRVDWAEPLNEPGED 436
Query: 369 IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+M+QVK+++V LP D + + L YG+I +I L++N+P+A+RKDF FV ++
Sbjct: 437 VMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNYE 491
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 185/360 (51%), Gaps = 30/360 (8%)
Query: 86 EYEKDERLDLD-DNEPEYEPEEYGGVDYDDKET----EHEDVQEVGNEEDEHDDENVGEE 140
E DER+D+D D EPE D D ET E E + G + D ++DE
Sbjct: 9 EVHDDERIDIDGDVEPE---------DVIDDETDGIVEEEKADQEGLDLDMNEDEG---- 55
Query: 141 EEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVF 200
GE E +H G + ENA A+ E VD ++ + + R EVF
Sbjct: 56 -------GEDEAYTTDHENGLQNGENAS--ADLGESVDVDDDEETKSLLSRPPHGS-EVF 105
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
+GG+ +D DDLR++ S GE+ EVR++ + +T NKG+AF+ + E A +A+ L N
Sbjct: 106 IGGVTRDTNEDDLRELCSPCGEIFEVRILKDKETGNNKGYAFVTYTNRETAEKAIETLAN 165
Query: 261 PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMN 320
+ G++ + SQ LF+GNI K+W L++ L G VE + L++D N G N
Sbjct: 166 SELKGRKLRFSHSQAKHRLFIGNIPKSWDTPELEKILAEEG-PGVEGVELLKDPRNPGKN 224
Query: 321 RGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDG 380
RGFAF+E+ + + A A K + + G + P VS+AD +Q+K V+V
Sbjct: 225 RGFAFVEYYNHACADHARKLMSRSSFRLGNNVPT-VSWADPRTGAEPAATSQIKVVYVRN 283
Query: 381 LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
LP + E+++R L +++GEITK+ L ++ P ++DFGFV F + A+ + EL
Sbjct: 284 LPEAVTEEQLRGLFEHHGEITKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTEKYEL 343
Score = 42.7 bits (99), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 128/295 (43%), Gaps = 34/295 (11%)
Query: 68 NGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGN 127
NG ++ ESVD + +E L P GGV D T +D++E+ +
Sbjct: 67 NGLQNGENASADLGESVDVDDDEETKSLLSRPPHGSEVFIGGVTRD---TNEDDLRELCS 123
Query: 128 EEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
E + + +++E G + E E A E E+ + H
Sbjct: 124 PCGEIFEVRILKDKE----TGNNKGYAFVTYTNRETAEKAIETLANSELKGRKLRFSHSQ 179
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE-VRLMMNPQTK-KNKGFAFLRF 245
+ R +F+G + K +L K+ ++ G E V L+ +P+ KN+GFAF+ +
Sbjct: 180 AKHR-------LFIGNIPKSWDTPELEKILAEEGPGVEGVELLKDPRNPGKNRGFAFVEY 232
Query: 246 ---ATVEQARQAVT----ELKN--PVINGK--QCGVTPSQDSD--TLFLGNICKTWTKEA 292
A + AR+ ++ L N P ++ + G P+ S +++ N+ + T+E
Sbjct: 233 YNHACADHARKLMSRSSFRLGNNVPTVSWADPRTGAEPAATSQIKVVYVRNLPEAVTEEQ 292
Query: 293 LKEKLKHYGVDNVEDLTLVEDSNNEGM-NRGFAFLEFSSRSDAMDAFKRLQKRDV 346
L+ +H+G E +V + G R F F+ F+ R+DA+ A ++ +K ++
Sbjct: 293 LRGLFEHHG----EITKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTEKYEL 343
>gi|224153375|ref|XP_002337347.1| predicted protein [Populus trichocarpa]
gi|222838882|gb|EEE77233.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 118/178 (66%), Gaps = 3/178 (1%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
F+VFVGGLDK +DLRKVF V EVT+VRL + ++KK AFL FATVE AR+A+
Sbjct: 21 FKVFVGGLDKYAKEEDLRKVFGGVEEVTKVRLSWDSESKKR--VAFLTFATVELARRAIC 78
Query: 257 ELKNPVINGKQCGVTPSQD-SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSN 315
E+ +PVINGK+C QD S TL++ NICK WTK+ L++KL YGV N E LTL
Sbjct: 79 EISDPVINGKRCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEILTLNPARE 138
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQV 373
N+ NRG+A L+F S DA +A + L+K +V FG +R AK F+ + DEIM+ V
Sbjct: 139 NKEKNRGYAHLDFRSGKDASEALELLKKENVSFGQNRAAKADFSRKYASGNDEIMSHV 196
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 145/259 (55%), Gaps = 6/259 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVGG+ +D +DLR + S G+V EVRL+ + T +NKG+AF+ F E A +A+
Sbjct: 126 EIFVGGITRDTTEEDLRTLCSSCGDVYEVRLLKDKDTGQNKGYAFVTFLNEECAEKAIET 185
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L + + G++ + SQ LF+GNI KTW KE L+ L G ++ + L++D
Sbjct: 186 LNDSEVKGRKLRFSQSQSKHRLFVGNIPKTWEKEELESVLSEQG-PGIQSVELLKDPKTP 244
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
G NRGF F+E+ + + A A + + K G + P +S+AD P M+QVK V+
Sbjct: 245 GRNRGFGFVEYYNHACAEHARREMSKSSFRLGTNAPT-ISWADPRSGPDVSAMSQVKVVY 303
Query: 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437
V LP S E+++++L + +GEI K+ L P ++DFGFV F A+ K+I
Sbjct: 304 VRNLPDSVTEEQLQKLFERHGEIVKVVLPATKPGQAKRDFGFVHFSDRAQAL---KAIEK 360
Query: 438 AELGEGDNKAKVRARLSRP 456
E+ E + + + L++P
Sbjct: 361 TEVYELEGRI-LETSLAKP 378
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 184/355 (51%), Gaps = 16/355 (4%)
Query: 88 EKDERLDLDDNE--PEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDL 145
E DER+DLD+ E + + +D D + E+ E EEDE++D +D L
Sbjct: 6 EIDERVDLDEENYMEEMDDDVEEQIDDDGVDGVEEENAEGSFEEDEYEDSAAEAGGKDQL 65
Query: 146 AEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLD 205
E E D+ E G E+++ +D +E + H+ EVF+GGL
Sbjct: 66 PEAEKSDIATEFGDDEQKLS----------FIDEDEKEKHDELLALPPHGS-EVFIGGLP 114
Query: 206 KDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265
+DV DDLR++ +G++ EVRLM + T +NKG+AF+ F T E A++A+ E+ + G
Sbjct: 115 RDVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKG 174
Query: 266 KQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
K + S+ LF+GN+ KTWT++ ++ ++ G VE + L++D N NRGFAF
Sbjct: 175 KTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVG-PGVETIELIKDPQNPSRNRGFAF 233
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASW 385
+ + + + A + +++ + P V++AD P +QVK ++V +P +
Sbjct: 234 VLYYNNACADYSRQKMASSSFKLDGNTPT-VTWADPKNSPDHSASSQVKALYVKNIPENV 292
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
++++EL + +GE+TK+ + KR DFGF+ + +A+ K E+
Sbjct: 293 TTEQLKELFRRHGEVTKVVMPPGKAGGKR-DFGFIHYAERSSALKAVKDTEKYEI 346
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 163/298 (54%), Gaps = 20/298 (6%)
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEF--------EVFVGGLDKDVVGDDLRKVFS 218
A +EA+ P+ D +E + E RK E EV++GG+ D +DL++
Sbjct: 35 ASDEADSPKGSDGDEEE-----DEHRKHSELLALPPHGSEVYLGGIPPDASEEDLKEFCE 89
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
+GEVTE+R+M + ++KG+AF+ F T E A +A+ EL N GK+ + SQ +
Sbjct: 90 SIGEVTEIRIMKGKDSSESKGYAFVTFRTKELASKAIEELNNTEFKGKKVKCSTSQANHR 149
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+GN+ + W +E +K+ +K G V + L++D N NRGFAF+E+ + + A +
Sbjct: 150 LFIGNVPRNWGEEDMKKAVKKTG-PGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSR 208
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
K + + + P VS+AD + G +QVK V+V LP ++DR+R+L +++G
Sbjct: 209 KMMSSPEFKLDDNAPT-VSWADP-KNAGSSAASQVKAVYVKNLPEDINQDRLRQLFEHHG 266
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
++TK+ L P ++ FGFV F +A+ K++ N E + D + + L++P
Sbjct: 267 KVTKVVLPPAKPGHEKSRFGFVHFAERSSAM---KALKNTEKYKIDGQV-LDCSLAKP 320
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 127/292 (43%), Gaps = 44/292 (15%)
Query: 82 ESVDEYEKDERLDLDDNE------------PEYEPEEY-GGVDYDDKETEHEDVQEVGNE 128
E+ DE + + D D+ E P + E Y GG+ D E ED++E
Sbjct: 34 EASDEADSPKGSDGDEEEDEHRKHSELLALPPHGSEVYLGGIPPDASE---EDLKEFC-- 88
Query: 129 EDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMF 188
E++GE E + +G +D E G ++ E ++ E ++
Sbjct: 89 ------ESIGEVTEIRIMKG--KDSSESKGYAFVTFRTKELASKAIEELNNTEFKGKKV- 139
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQT-KKNKGFAFLRF- 245
+ + +F+G + ++ +D++K + G V V L+ +PQ +N+GFAF+ +
Sbjct: 140 KCSTSQANHRLFIGNVPRNWGEEDMKKAVKKTGPGVNSVELLKDPQNPSRNRGFAFIEYY 199
Query: 246 --ATVEQARQAVT--ELK----NPVING---KQCGVTPSQDSDTLFLGNICKTWTKEALK 294
A E +R+ ++ E K P ++ K G + + +++ N+ + ++ L+
Sbjct: 200 NHACAEYSRKMMSSPEFKLDDNAPTVSWADPKNAGSSAASQVKAVYVKNLPEDINQDRLR 259
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
+ +H+G V + L +R F F+ F+ RS AM A K +K +
Sbjct: 260 QLFEHHG--KVTKVVLPPAKPGHEKSR-FGFVHFAERSSAMKALKNTEKYKI 308
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 189/369 (51%), Gaps = 20/369 (5%)
Query: 88 EKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAE 147
E ++R+DLDD+ E + DD E + ED E G DENV EE ED A
Sbjct: 6 EVEDRVDLDDDNYMEEMD-------DDVEEQIEDGVEGGG------DENVEEEYEDSKAG 52
Query: 148 GEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKD 207
G ED E + E +E VD +E + H E+F+GGL ++
Sbjct: 53 GSGEDQLLEVDESRIANEPLKDEENPTASVDEDEKEKHAQLLALPPHGS-EIFIGGLPRE 111
Query: 208 VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267
+ +DLR + +GE EVRLM N + ++KG+AF+ F T E A++A+ EL + G+
Sbjct: 112 ALEEDLRDLCEPIGEALEVRLMKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRT 171
Query: 268 CGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327
+ S+ LF+GN+ K+WT + ++ ++ G E++ L++D N NRGFAF+E
Sbjct: 172 IRCSLSESKHRLFIGNVPKSWTDDEFRKVIEDIG-PGAENIELIKDPQNPSRNRGFAFVE 230
Query: 328 FSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDE 387
+ + + A +++ + + P VS+AD AQVK ++V +P +
Sbjct: 231 YYNNACADYGRQKMSSSNFKLDGNTPT-VSWADPKSTSDHSAAAQVKALYVKNIPENTTT 289
Query: 388 DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447
++++EL + +GE+TK+ + ++DFGF+ F +A+ K++ + E E D +A
Sbjct: 290 EQLKELFQRHGEVTKVVMPPAKSGQSKRDFGFIHFAERSSAL---KAVKDTEKHEIDGQA 346
Query: 448 KVRARLSRP 456
+ L++P
Sbjct: 347 -LDVSLAKP 354
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 170/315 (53%), Gaps = 19/315 (6%)
Query: 128 EEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
EE E+++ ++D EGE D HG E+E+ +P ++D EE + H+
Sbjct: 48 EEHEYEETAAEAGQKDQFPEGEKSD----HGAEEDEL--------KPALIDEEEREKHDE 95
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
R EVF+GGL +D DD+R++ +G++ E++L+ + +T ++KG+AF+ + T
Sbjct: 96 LLSRPPHGS-EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKT 154
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
E A++A+ ++ N GK S+ LF+GNI KTWT++ ++ ++ G VE
Sbjct: 155 KEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVG-PGVES 213
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPG 366
+ L++D N+ NRGFAF+ + ++A F R + V F +D V++AD P
Sbjct: 214 IDLIKDPQNQSRNRGFAFVLY--YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Query: 367 DEIMA-QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
A QVK ++V +P + ++++EL + +GE+TK+ + S KR DFGF+ +
Sbjct: 272 QSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKR-DFGFIHYAER 330
Query: 426 DAAVTCAKSINNAEL 440
+A+ K E+
Sbjct: 331 SSALKAVKETEKYEI 345
>gi|116789923|gb|ABK25440.1| unknown [Picea sitchensis]
Length = 376
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 156/241 (64%), Gaps = 28/241 (11%)
Query: 554 KREYGRRDEVPPPR----SRAPVDYGSRVVPDRR-PYRDEYTSRGSG-YPDM--PRSTSR 605
KR+YGRRDE R SR+ D+ +R RR YRD Y +RGSG Y D PR SR
Sbjct: 145 KRDYGRRDEPYDDRQVRSSRSAPDFSTRAAAARRSSYRDSYANRGSGSYSDNAPPRGVSR 204
Query: 606 GAARR-PYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHS 664
+RR PY ++ Y +R ++P YR+ R RDY++VSGSKRPYS V++ PPRY +P +R+S
Sbjct: 205 TVSRRPPYPEESYGRRIDKP---YRDSRGRDYDSVSGSKRPYSAVEE-PPRYGEPAMRNS 260
Query: 665 RARLDYDLGGGAPQYGDAYGD--RMGR-SNLGYGGSRSSISSQDSHGLY---SSRQGMGY 718
RARLDY + A QYGD YG+ R+GR S LGYGG S + QDS+GLY SR G GY
Sbjct: 261 RARLDYGVSASASQYGD-YGESVRLGRGSQLGYGG---SSARQDSYGLYDGHQSRVGSGY 316
Query: 719 GGSYSGGDVGGMYS----SSYGSDYMPRGSDVGGSSYSSMYPGRGVGGSSYMGSGGSGSY 774
GGS + G +GG + SSYG+DY+ G+D+GG SYSSMY GS Y+ GSGSY
Sbjct: 317 GGSKTYGSLGGSEAGGTYSSYGNDYLSSGADIGGGSYSSMY-SSRSMGSGYLPGSGSGSY 375
Query: 775 Y 775
Y
Sbjct: 376 Y 376
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 29/163 (17%)
Query: 1 MPPR--------TVKRGAA-GPRRTARATRGTA--KQQAEVAE-----------ETVKVE 38
MPPR T K+ AA P +T ++ T K + E+ E E VKV
Sbjct: 1 MPPRVKKPAGTPTPKKAAAKTPNKTPKSANKTPPPKLEPEIVENVEKPEEADHVEDVKVL 60
Query: 39 EVPVKEEEKAVVEDDN----KPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDERLD 94
EVPVK+++ E N K ++P + VN S P E+E K + DE +K ERL+
Sbjct: 61 EVPVKDDKIIEAEKLNERTAKDAAAAEKP-APVNKSTPKKDAEEEAKPAFDEDDKGERLE 119
Query: 95 LDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENV 137
LDDN + EPEE DD + + ++ G ++ +DD V
Sbjct: 120 LDDNVSDSEPEEDDEGTKDDARSNSK--RDYGRRDEPYDDRQV 160
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 202/429 (47%), Gaps = 38/429 (8%)
Query: 128 EEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
EE E++D +D L E E D+ E G E+++ +D +E + H+
Sbjct: 48 EEHEYEDSAAEAGGKDQLPEAEKSDIATEFGDDEQKLS----------FIDEDEKEKHDE 97
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
EVF+GGL +DV DDLR++ +G++ EVRLM + T ++KG+AF+ F T
Sbjct: 98 LLALPPHGS-EVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKT 156
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
E A++A+ E+ + GK + S+ LF+GN+ KTWT++ ++ ++ G VE
Sbjct: 157 KEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVG-PGVET 215
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+ L++D N NRGFAF+ + + + A + +++ + P V++AD P
Sbjct: 216 IELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPT-VTWADPKNSPDH 274
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
+QVK ++V +P + ++++EL + +GE+TK+ + KR DFGF+ + +
Sbjct: 275 SASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKR-DFGFIHYAERSS 333
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRP---------------LQRGKGKHASRGDFRS 472
A+ K E+ + + L++P L H + G+F S
Sbjct: 334 ALKAVKDTEKYEI----DGQMLEVVLAKPQADKKPDGGYAYNPGLHPNHVPHPAYGNF-S 388
Query: 473 GRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSMTARARPMP 532
G G G +G+ + P RG +P P+ + D R + +P
Sbjct: 389 GNPYGSLGAG-YGVAAGYQQPMIYGRG---PMPAGMQMVPMMLPDGRIGYVLQQPGVQVP 444
Query: 533 PPPPRSYDR 541
P PR DR
Sbjct: 445 PARPRRNDR 453
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 152/287 (52%), Gaps = 19/287 (6%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
E EVFVGG+ ++ ++L+ +FS +G V +VR+M + +NKG+ F+ FA ++AV
Sbjct: 111 ENEVFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAV 170
Query: 256 TELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY--GVDNVEDLTLVED 313
+ N GK V S++ +F+GN+ K K+ L L + G+ NV+ LT D
Sbjct: 171 VQFNNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLT---D 227
Query: 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQV 373
+N NRGFAF+E++ A A K + + G + V++AD +P + IM QV
Sbjct: 228 PDNSSRNRGFAFIEYTDYYQAEKARKEFSQPNFKIG-NCNVTVNWADPIQEPDETIMNQV 286
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD-AAVTCA 432
+ +++ LP S E++VR+L + YG I K+ + N+P +R+DFGFV F D A T A
Sbjct: 287 RVLYIRNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQRRDFGFVHFANRDEAEATLA 346
Query: 433 KSINNAELGEG-----------DNKAKVRARLSRPLQRGKGKHASRG 468
+ + +G D K + R+ R LQR +H + G
Sbjct: 347 RHHDTPITYQGRPLSLSFAKPIDKKQRAELRVRR-LQRTVSRHHTTG 392
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 214/439 (48%), Gaps = 50/439 (11%)
Query: 134 DENVGEEEEDDLAE---GEMEDVPEEHGQGEE---EVENAGEEAERPEMVDAEEHDHHEM 187
++N E E +D + G+MEDV EE + ++ ++E A ++ + P +D E+ + +
Sbjct: 48 NQNAEEREVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSH 107
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
EVF+GGL +DV +DLR + ++GE+ EVRLM + + +KG+AF+ F T
Sbjct: 108 LLSLPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKT 166
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+ A++A+ EL + GK + S+ + LF+GNI K WT++ ++ ++ G VE+
Sbjct: 167 KDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG-PGVEN 225
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDP- 365
+ L++D N NRGFAF+ + ++A + R + D F ++ A V++AD P
Sbjct: 226 IELIKDPTNTTRNRGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFD 423
AQVK ++V +P + ++++EL + +GE+TKI P K ++DFGFV +
Sbjct: 284 HSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIV----TPPGKGGKRDFGFVHYA 339
Query: 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGK----------------HASR 467
+A+ K E+ N + L++P K H +
Sbjct: 340 ERSSALKAVKDTERYEV----NGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
Query: 468 GDFRS----GRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRP-VPVRDRRPIM 522
G F + G G GS+ P + GR A G ++ P + V ++P M
Sbjct: 396 GGFAAAPYGAMGAGLGIAGSFSQP---MIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGM 452
Query: 523 SMTARARPMPPPPPRSYDR 541
M A PP PR DR
Sbjct: 453 PMAA----APPQRPRRNDR 467
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 134/306 (43%), Gaps = 54/306 (17%)
Query: 78 DEVKESVDEYEKDERLDL---DDNEPEYEPEEYGGVDYDDKE-TEH--------EDVQEV 125
++V+E + E + D +D+ DD+E P +D +D+E H +V
Sbjct: 68 EDVQEEIAE-DDDNHIDIETADDDEKPPSP-----IDDEDREKYSHLLSLPPHGSEVFIG 121
Query: 126 GNEEDEHDDENVGEEEEDDLAE--GEMEDVPEEHGQGEEEVENAGEEAERPEMV--DAEE 181
G D VGEE+ DL E GE+ +V + + + A + + V A E
Sbjct: 122 GLPRD------VGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 182 HDHHEMFQERRKRKEFE-----VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNP-QT 234
H + F+ + R +F+G + K+ D+ RKV VG V + L+ +P T
Sbjct: 176 ELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNT 235
Query: 235 KKNKGFAFLRF---ATVEQARQAVT------ELKNPVINGKQCGVTPSQDS-----DTLF 280
+N+GFAF+ + A + +RQ + E P + +P + L+
Sbjct: 236 TRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALY 295
Query: 281 LGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKR 340
+ NI + + E LKE + +G ++T + +G R F F+ ++ RS A+ A K
Sbjct: 296 VKNIPENTSTEQLKELFQRHG-----EVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKD 350
Query: 341 LQKRDV 346
++ +V
Sbjct: 351 TERYEV 356
>gi|3341691|gb|AAC27473.1| putative heterogeneous nuclear ribonucleoprotein [Arabidopsis
thaliana]
Length = 300
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 180/298 (60%), Gaps = 23/298 (7%)
Query: 76 KEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDE 135
+E EV+ESVD++ KDERLDLDDNEPEYE EEYGG +++++E ED + V E +E ++E
Sbjct: 9 EETEVEESVDDFGKDERLDLDDNEPEYEAEEYGGEEFEERELGQEDHELVNEEGEELEEE 68
Query: 136 NVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRK 195
EEE + A+ E+ D E+ +++ ++A EE + E VD EE +HH++ ERRKRK
Sbjct: 69 IEVEEEAGEFAD-EIGDGAEDLDSEDDDDDHAIEEVKHGETVDVEEEEHHDVLHERRKRK 127
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
EFE+FVG LDK +DL+KVF VGEVTEVR++ NPQTKK+KG AFLRFATVEQA++AV
Sbjct: 128 EFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAV 187
Query: 256 TELKNP--VINGKQC-------------GVTPSQDSDTLFLGNICKTWTKEALKEKLKHY 300
ELKN +I G+ + T+F+ + +W +E +++ LK Y
Sbjct: 188 KELKNTELLIVGESIISNLSILLIVISFMIFLVLQVKTIFIDGLLPSWNEERVRDLLKPY 247
Query: 301 GVDNVEDLTLVEDSNN--EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356
G L VE + N + F F+ F + A+ K + ++ G D+ +
Sbjct: 248 G-----KLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKVCII 300
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 118/172 (68%), Gaps = 4/172 (2%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
+F+G++ K ++E LK+ H G V ++ ++++ + ++G AFL F++ A A
Sbjct: 131 IFVGSLDKGASEEDLKKVFGHVG--EVTEVRILKNPQTKK-SKGSAFLRFATVEQAKRAV 187
Query: 339 KRLQKRDVLF-GVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
K L+ ++L G + +S I ++ QVKT+F+DGL SW+E+RVR+LLK Y
Sbjct: 188 KELKNTELLIVGESIISNLSILLIVISFMIFLVLQVKTIFIDGLLPSWNEERVRDLLKPY 247
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
G++ K+ELARNMPSA+RKDFGFVTFDTH+AAV+CAK INN+ELGEG++K +
Sbjct: 248 GKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKVCI 299
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 158/281 (56%), Gaps = 20/281 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++F+G L +D+ D+L +F G + ++R+M++P + NKGFAF + T E A AV E
Sbjct: 165 QIFIGKLPRDMYEDELVPMFEPHGTIYDLRIMVDPFSGLNKGFAFCTYTTKEAATLAVKE 224
Query: 258 LK-NPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ V +GK GV SQ ++ LF+G+I K+ TK+ + ++ V+N+ D+ + S +
Sbjct: 225 MDGKQVRDGKTLGVCLSQANNRLFVGSIPKSKTKQQIFDEFAS-KVENLSDVIVYISSED 283
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAFLEF++ DA A +R R +FG P V +AD +P D +M++VK
Sbjct: 284 KSKNRGFAFLEFTTHKDASLARRRFMTGRIKVFGNITPT-VDWADPVEEPDDNVMSKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
V+V L + +E ++ EL K YG + K++ K KD+ F+ F D AV + +
Sbjct: 343 VYVRNLSPAIEETKLNELFKQYGAVEKVK--------KLKDYAFIHFVNRDDAVRAIEEL 394
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N +L + K+ L++P + + K A RG +SG G+
Sbjct: 395 NGQDL----DDLKIEVSLAKP--QTEKKEARRG--QSGFGS 427
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 147/259 (56%), Gaps = 7/259 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV++GG+ ++V +DLR VGEV+EVR+M ++ + KG+AF+ F T E A +A+ E
Sbjct: 104 EVYIGGIPQNVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMTKELASKAIEE 163
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N GK+ + SQ LF+GN+ K WT+ +K+ + G V + L++D N
Sbjct: 164 LNNSEFKGKRIKCSTSQVKHKLFIGNVPKYWTEGDMKKVVAEIG-PGVICVELLKDPQNS 222
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
NRG+AF+E+ + + A + +++ + G + P VS+AD I + VK+V+
Sbjct: 223 SRNRGYAFIEYYNHACAEYSRQKMSNSNFKLGSNAPT-VSWADPRNSESSAI-SLVKSVY 280
Query: 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437
V LP + +DR++EL +++G+ITK+ L ++ FGFV F +A+ K++ N
Sbjct: 281 VKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAM---KALKN 337
Query: 438 AELGEGDNKAKVRARLSRP 456
E E D + + L++P
Sbjct: 338 TEKYEIDGQL-LECSLAKP 355
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 98/219 (44%), Gaps = 46/219 (21%)
Query: 144 DLAEGEMEDV--PEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFV 201
+LA +E++ E G+ + + + ++F+
Sbjct: 155 ELASKAIEELNNSEFKGK---------------------------RIKCSTSQVKHKLFI 187
Query: 202 GGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRF---ATVEQARQAVT 256
G + K D++KV +++G V V L+ +PQ + +N+G+AF+ + A E +RQ ++
Sbjct: 188 GNVPKYWTEGDMKKVVAEIGPGVICVELLKDPQNSSRNRGYAFIEYYNHACAEYSRQKMS 247
Query: 257 ELKNPV-INGKQCGVTPSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+ N ++S+ ++++ N+ + T++ LKE +H+G +
Sbjct: 248 NSNFKLGSNAPTVSWADPRNSESSAISLVKSVYVKNLPENITQDRLKELFEHHG--KITK 305
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
+ L + + +R F F+ F+ RS AM A K +K ++
Sbjct: 306 VVLPSAKSGQEKSR-FGFVHFAERSSAMKALKNTEKYEI 343
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 163/313 (52%), Gaps = 14/313 (4%)
Query: 128 EEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
EE E++D +D L E E D+ E G E+++ +D +E + H+
Sbjct: 48 EEHEYEDSAAEAGGKDQLPEAEKSDIATEFGDDEQKLS----------FIDEDEKEKHDE 97
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
EVF+GGL +DV DDLR++ +G++ EVRLM + T ++KG+AF+ F
Sbjct: 98 LLALPPHGS-EVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKA 156
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
E A++A+ E+ + GK + S+ LF+GN+ KTWT++ ++ ++ G VE
Sbjct: 157 KEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVG-PGVET 215
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+ L++D N NRGFAF+ + + + A + +++ + P V++AD P
Sbjct: 216 IELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPT-VTWADPKNSPDH 274
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
+QVK ++V +P + ++++EL + +GE+TK+ + KR DFGF+ + +
Sbjct: 275 SASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKR-DFGFIHYAERSS 333
Query: 428 AVTCAKSINNAEL 440
A+ K E+
Sbjct: 334 ALKAVKDTEKYEI 346
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 146/260 (56%), Gaps = 9/260 (3%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ +D +DL+ VGEVTEVR+M + +NKGFAF+ F VE A +A+ E
Sbjct: 125 EVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEE 184
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N G++ + SQ LF+GN+ ++W +E +K+ + G V + LV+D N
Sbjct: 185 LNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIG-PGVTAVELVKDMKNS 243
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKTV 376
NRGFAF+++ + + A + R + + F +D A VS+AD + +QVK V
Sbjct: 244 SNNRGFAFIDYYNHACA--EYSRQKMMNPKFKLDNNAPTVSWADP-KNADSSPASQVKAV 300
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+V LP + +D++++L +++G+ITK+ L ++ GFV F +A+ K++
Sbjct: 301 YVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAM---KALK 357
Query: 437 NAELGEGDNKAKVRARLSRP 456
N E E D + + L++P
Sbjct: 358 NTEKYEIDGQV-LECSLAKP 376
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 151/285 (52%), Gaps = 17/285 (5%)
Query: 183 DHHEMFQERRKRKEF--------EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT 234
D E E+RK E EV++GG+ D DL++ +GEVTEVR+M +
Sbjct: 67 DGEEEIDEQRKHAELLALPPHGSEVYLGGIPPDASEGDLKEFCESIGEVTEVRIMKGKDS 126
Query: 235 KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALK 294
++KG+AF+ F T E A +A+ EL N GK+ + SQ + LF+GN+ + W +E +K
Sbjct: 127 SESKGYAFVSFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVPRNWGEENMK 186
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
+ +K G V + L++D N NRGFAF+E+ + + A + K++ + + P
Sbjct: 187 KAVKKIG-PGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKMSNPEFKLDDNAPT 245
Query: 355 KVSFAD---SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
VS+AD + ++ VK V+V LP +D +R+L +++G++TK+ L P
Sbjct: 246 -VSWADPKNAGSSAASQVCCSVKAVYVKNLPEDITQDGLRQLFEHHGKVTKVVLPPAKPG 304
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
++ FGFV F +A+ K++ N E E D + L++P
Sbjct: 305 HEKSRFGFVHFAERSSAM---KALKNTEKYEIDGHV-LDCSLAKP 345
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 2/233 (0%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
E EVFVGG+ K+V DDL+ VF+ VG V ++RLM N ++KG+AF+ F + AV
Sbjct: 46 ENEVFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQMAV 105
Query: 256 TELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSN 315
++ N + GK V S++ LFLGN+ K + KE L E L + + + + + D +
Sbjct: 106 EKISNKELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKH-TEGITSMDFLMDPD 164
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
N NRGFAF+EFS A A K G V++AD +P +++M V+
Sbjct: 165 NPTRNRGFAFVEFSDYYLADKARKEFASPSFRIG-SSCVTVNWADPVQEPDEDVMKNVRV 223
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
++V LP + + ++++ + +G I K+ + N+P +R+DFGFV F++ +AA
Sbjct: 224 LYVRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQRRDFGFVHFESREAA 276
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
VFV G+ + ED ++ + + G + +I L +N + + K + F+TF+ + + I
Sbjct: 49 VFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQMAVEKI 108
Query: 436 NNAEL 440
+N EL
Sbjct: 109 SNKEL 113
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 207 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 266
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 267 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 325
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 326 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 383
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 384 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 435
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 436 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 464
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 125 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 242 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 293
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 294 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 322
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 125/439 (28%), Positives = 210/439 (47%), Gaps = 50/439 (11%)
Query: 134 DENVGEEEEDDLAE---GEMEDVPEEHGQGEE---EVENAGEEAERPEMVDAEEHDHHEM 187
++N E E +D + G+MEDV EE + ++ ++E A ++ + P +D E+ + +
Sbjct: 48 NQNAEEREVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSH 107
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
EVF+GGL +DV +DLR + ++GE+ EVRLM + + +KG+AF+ F T
Sbjct: 108 LLSLPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKT 166
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+ A++A+ EL + S+ LF+GNI K WT++ ++ ++ G VE+
Sbjct: 167 KDVAQKAIEELHSKEFKASSTANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVG-PGVEN 225
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDP- 365
+ L++D N NRGFAF+ + ++A + R + D F ++ A V++AD P
Sbjct: 226 IELIKDPTNTTRNRGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFD 423
AQVK ++V +P + ++++EL + +GE+TKI P K ++DFGFV +
Sbjct: 284 HSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIV----TPPGKGGKRDFGFVHYA 339
Query: 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGK----------------HASR 467
+A+ K E+ N + L++P K H +
Sbjct: 340 ERSSALKAVKDTERYEV----NGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
Query: 468 GDFRS----GRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRP-VPVRDRRPIM 522
G F + G G GS+ P + GR A G ++ P + V ++P M
Sbjct: 396 GGFAAAPYGAMGAGLGIAGSFSQP---MIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGM 452
Query: 523 SMTARARPMPPPPPRSYDR 541
M A PP PR DR
Sbjct: 453 PMAA----APPQRPRRNDR 467
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 64/311 (20%)
Query: 78 DEVKESVDEYEKDERLDL---DDNEPEYEPEEYGGVDYDDKE-TEH--------EDVQEV 125
++V+E + E + D +D+ DD+E P +D +D+E H +V
Sbjct: 68 EDVQEEIAE-DDDNHIDIETADDDEKPPSP-----IDDEDREKYSHLLSLPPHGSEVFIG 121
Query: 126 GNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHH 185
G D VGEE+ DL E E+ ++ E + + ++ A V + D
Sbjct: 122 GLPRD------VGEEDLRDLCE-EIGEIFEVRLMKDRDSGDSKGYA----FVAFKTKDVA 170
Query: 186 EMFQERRKRKEFE--------------VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMM 230
+ E KEF+ +F+G + K+ D+ RKV VG V + L+
Sbjct: 171 QKAIEELHSKEFKASSTANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIK 230
Query: 231 NP-QTKKNKGFAFLRF---ATVEQARQAVT------ELKNPVINGKQCGVTPSQDS---- 276
+P T +N+GFAF+ + A + +RQ + E P + +P +
Sbjct: 231 DPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQ 290
Query: 277 -DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
L++ NI + + E LKE + +G ++T + +G R F F+ ++ RS A+
Sbjct: 291 VKALYVKNIPENTSTEQLKELFQRHG-----EVTKIVTPPGKGGKRDFGFVHYAERSSAL 345
Query: 336 DAFKRLQKRDV 346
A K ++ +V
Sbjct: 346 KAVKDTERYEV 356
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 191
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 192 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 249
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 250 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 302 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 330
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 125 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 242 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 293
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 294 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 322
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 265 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 324
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 325 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 383
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 384 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 441
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 442 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 493
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 494 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 522
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 236 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 295
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 296 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 354
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 355 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 412
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 413 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 464
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 465 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 493
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 191
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 192 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 249
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 302 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 330
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 214 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 273
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 274 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 332
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 333 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 390
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 391 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 442
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 443 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 471
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 178 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 237
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 238 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 296
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 297 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 354
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 355 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 406
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 407 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 435
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 178 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 237
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 238 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 296
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 297 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 354
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 355 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 406
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 407 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 435
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSQV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 135 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 194
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 195 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 253
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 254 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 311
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 312 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 363
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 364 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 392
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 148/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F E A++AV
Sbjct: 174 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCNKEAAQEAVKL 233
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 234 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 292
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 293 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 350
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 351 LFVRNLANSVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEGM 402
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N EL EG+N V A+ P Q+ K + A R
Sbjct: 403 NGKEL-EGENIEIVFAK--PPDQKRKERKAQR 431
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 199 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 258
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 259 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 317
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 318 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 375
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 376 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 427
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 428 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 456
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 160 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 219
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 220 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 278
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 279 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 336
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 337 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 388
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 389 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 417
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 98 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 157
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 158 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 216
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 217 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 274
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 275 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 326
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 327 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 355
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 138/243 (56%), Gaps = 2/243 (0%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +DV+ +DLR + +GE+ E+R++ + + ++KG+AF+ F T E A++A+ +
Sbjct: 106 EVFIGGLSRDVLEEDLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIED 165
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L + GK + S LF+GN+ K+WT + + ++ G VE++ L++D N
Sbjct: 166 LHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTDDEFRRLIEGVG-PGVENIELIKDPQNP 224
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
NRGFAF+ + + + A + +++ + + P VS+AD P + AQVK ++
Sbjct: 225 NRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPT-VSWADPKSMPDNSAAAQVKALY 283
Query: 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437
V +P + ++++EL + +GE+TK+ + + ++DF F+ + +A+ K
Sbjct: 284 VKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEK 343
Query: 438 AEL 440
E+
Sbjct: 344 YEI 346
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 22/278 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 65 EVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEAAQEAVKL 124
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 125 CDNYEIRTGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLLDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P EIMA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEIMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L ++ E+ + + +G++ +++ K KD+ FV FD DAAV +
Sbjct: 242 LFVRNLSSTVTEEILEKAFSVFGKLERVK--------KLKDYAFVHFDERDAAVRAMDEM 293
Query: 436 NNAELGEGDNKAKVRARLSRP-----LQRGKGKHASRG 468
N AEL EG+ ++ L++P +R + ASRG
Sbjct: 294 NGAEL-EGE---EIEIVLAKPPDKKRKERQAARQASRG 327
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 160 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 219
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 220 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 278
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 279 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 336
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 337 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 388
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 389 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 417
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 147/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 310 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 369
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 370 YNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 428
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 429 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 486
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD AV + +
Sbjct: 487 LFVRNLANTVTEEILEKAFGQFGKLERVK--------KLKDYAFIHFDERVGAVKAMEEM 538
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N EL EG+N V A+ P Q+ K + A R
Sbjct: 539 NGKEL-EGENIEIVFAK--PPDQKRKERKAQR 567
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 162/318 (50%), Gaps = 41/318 (12%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P N+G+AF+ F E A+QAV E
Sbjct: 164 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQQAVRE 223
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L + I GK+ GVT S ++ LF+GNI K ++ L E+ + + ++ + ++
Sbjct: 224 LNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKH-APGLTEVIIYSSPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V+
Sbjct: 283 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVRV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + YG I +++ K KD+ FV F+ D AV +
Sbjct: 341 LYVKNLTQDCSEEKLKESFEQYGNIERVK--------KIKDYAFVHFEERDNAVKAMNEL 392
Query: 436 NNAELG-----------EGDNKAK---VRARLSRPLQRGKGK------HAS--------R 467
N E+G D K K +RAR R +Q +G+ H S R
Sbjct: 393 NGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMFQGRSGGSPSHPSMMGGPMPVR 452
Query: 468 GDFRSGRGTGRATRGSWG 485
G + RGTG RG G
Sbjct: 453 GPGQGPRGTGAGMRGQMG 470
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 141/256 (55%), Gaps = 14/256 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 92 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 151
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 152 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 210
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 211 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 268
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 269 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 320
Query: 436 NNAELGEGDNKAKVRA 451
N +L EG+N V A
Sbjct: 321 NGKDL-EGENIEIVFA 335
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 152/274 (55%), Gaps = 17/274 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL-KHYGV-DNVEDLTLVEDS 314
N I +GK GV S ++ LF+G+I K+ TKE + E+ K G+ + + D+ L
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTGLWEGLTDVILYHQP 282
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+V
Sbjct: 283 DDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKV 340
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ F+ FD D AV +
Sbjct: 341 KVLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAME 392
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+N +L EG+N V A+ P Q+ K + A R
Sbjct: 393 EMNGKDL-EGENIEIVFAK--PPDQKRKERKAQR 423
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 149/273 (54%), Gaps = 16/273 (5%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 10 IQIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 69
Query: 257 ELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSN 315
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L +
Sbjct: 70 LYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPD 128
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 129 DKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVK 186
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV +
Sbjct: 187 VLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 238
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+N +L EG+N V A+ P Q+ K + A R
Sbjct: 239 MNGKDL-EGENIEIVFAK--PPDQKRKERKAQR 268
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
GD + +FV +P ED + L + G I + L + + + + FVTF T
Sbjct: 2 GDHLQIPFIQIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 61
Query: 426 DAAVTCAKSINNAELGEGDN 445
+AA K NN E+ G +
Sbjct: 62 EAAQEAVKLYNNHEIRSGKH 81
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 149/273 (54%), Gaps = 16/273 (5%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 10 IQIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 69
Query: 257 ELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSN 315
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L +
Sbjct: 70 LYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPD 128
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 129 DKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVK 186
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV +
Sbjct: 187 VLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 238
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+N +L EG+N V A+ P Q+ K + A R
Sbjct: 239 MNGKDL-EGENIEIVFAK--PPDQKRKERKAQR 268
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 147/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 178 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 237
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 238 YNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 296
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 297 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 354
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD AV + +
Sbjct: 355 LFVRNLANTVTEEILEKAFGQFGKLERVK--------KLKDYAFIHFDERVGAVKAMEEM 406
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N EL EG+N V A+ P Q+ K + A R
Sbjct: 407 NGKEL-EGENIEIVFAK--PPDQKRKERKAQR 435
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 149/273 (54%), Gaps = 16/273 (5%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 10 IQIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 69
Query: 257 ELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSN 315
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L +
Sbjct: 70 LYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPD 128
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 129 DKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVK 186
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV +
Sbjct: 187 VLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 238
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+N +L EG+N V A+ P Q+ K + A R
Sbjct: 239 MNGKDL-EGENIEIVFAK--PPDQKRKERKAQR 268
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
GD + +FV +P ED + L + G I + L + + + + FVTF T
Sbjct: 2 GDRLQIPFIQIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 61
Query: 426 DAAVTCAKSINNAELGEGDN 445
+AA K NN E+ G +
Sbjct: 62 EAAQEAVKLYNNHEIRSGKH 81
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 11/226 (4%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
Q+RR K EVFVGGL + LR++FS GE+ + R+M + Q+ +KG+ F+RFA
Sbjct: 11 QDRRTEKGTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKD-QSGHSKGYGFVRFAKR 69
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-D 307
+ A A + + GK+ V S D DT+F GN+CK WT E +E + D V D
Sbjct: 70 DYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVD 129
Query: 308 LTLVED---SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVSFAD--S 361
L + + SN + +NRGF F+ FSS + A + + D + G + PA +++AD S
Sbjct: 130 LAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHPA-INWADKES 188
Query: 362 FIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
+DP + MA++K+ F+ LP +E+ +R+L +GE+ ++ ++R
Sbjct: 189 HLDPDE--MAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISR 232
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 11/226 (4%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
Q+RR K EVFVGGL + LR++FS GE+ + R+M + Q+ +KG+ F+RFA
Sbjct: 11 QDRRTEKGTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKD-QSGHSKGYGFVRFAKR 69
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-D 307
+ A A + + GK+ V S D DT+F GN+CK WT E +E + D V D
Sbjct: 70 DYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVD 129
Query: 308 LTLVED---SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-VDRPAKVSFAD--S 361
L + + SN + +NRGF F+ FSS + A + + D + G + PA +++AD S
Sbjct: 130 LAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHPA-INWADKES 188
Query: 362 FIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
+DP + MA++K+ F+ LP +E+ +R+L +GE+ ++ ++R
Sbjct: 189 HLDPDE--MAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISR 232
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 148/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NR F FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 150/278 (53%), Gaps = 22/278 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 68 EVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEAAQEAVKL 127
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 128 CDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 186
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P EIMA+VK
Sbjct: 187 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEIMAKVKV 244
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L ++ E+ + + +G++ +++ K KD+ FV FD DAAV +
Sbjct: 245 LFVRNLSSTVTEEILEKAFSVFGKLERVK--------KLKDYAFVHFDERDAAVRAMDEM 296
Query: 436 NNAELGEGDNKAKVRARLSRP-----LQRGKGKHASRG 468
N EL EG+ ++ L++P +R + ASRG
Sbjct: 297 NGTEL-EGE---EIEIVLAKPPDKKRKERQAARQASRG 330
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 154/308 (50%), Gaps = 26/308 (8%)
Query: 152 DVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGD 211
D+ H E +VE+ E+ + E++ H EV++GG+ D +
Sbjct: 8 DIQSSHQGDEAKVEDEDEKKKHAELLARPPHGS-------------EVYIGGVPNDASEE 54
Query: 212 DLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271
DL+ VGEVTEVR+M + NKGFAF+ F +V+ A +A+ EL N GK+ +
Sbjct: 55 DLKDFCESVGEVTEVRMMKGKDSSDNKGFAFVTFRSVDLATKAIGELNNTEFKGKRIKCS 114
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHY--GVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
SQ LFL NI ++W +E L + + G NV+ + + E S+N NRG+AF+E+
Sbjct: 115 TSQAKHRLFLSNIPRSWGEEDLSKFVAEVGPGTTNVQLVKVSESSSN---NRGYAFVEY- 170
Query: 330 SRSDAMDAFKRLQKRDVLFGV-DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDED 388
++A + R + D F + D VS+AD + +QVK ++V LP + +D
Sbjct: 171 -YNNACAEYSRQKMIDPKFKLGDNAPSVSWADP-KNADSSTSSQVKAIYVKNLPKTVTQD 228
Query: 389 RVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448
++++L + +G+ITK+ L ++ GFV F +A+ K EL N
Sbjct: 229 QLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYEL----NGQS 284
Query: 449 VRARLSRP 456
V L++P
Sbjct: 285 VECALAKP 292
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 150/278 (53%), Gaps = 22/278 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 65 EVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEAAQEAVKL 124
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 125 CDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P EIMA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEIMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L ++ E+ + + +G++ +++ K KD+ FV FD DAAV +
Sbjct: 242 LFVRNLSSTVTEEILEKAFSVFGKLERVK--------KLKDYAFVHFDERDAAVRAMDEM 293
Query: 436 NNAELGEGDNKAKVRARLSRP-----LQRGKGKHASRG 468
N EL EG+ ++ L++P +R + ASRG
Sbjct: 294 NGTEL-EGE---EIEIVLAKPPDKKRKERQAARQASRG 327
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 156/279 (55%), Gaps = 20/279 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +D +DLR++ +GE+ EVRLM + +TK+NKGFAF+ F + A+ A+ E
Sbjct: 110 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L + G+ + SQ LF+GN+ K ++E L +K G V ++ + +D +N
Sbjct: 170 LHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKG-PGVVNIEMFKDLHNP 228
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD-----SFIDPGDEIMA 371
NRGF F+E+ + + A A ++L D F VD VS+A+ S A
Sbjct: 229 SRNRGFLFVEYYNHACADYARQKLSSPD--FKVDGSQLTVSWAEPKGSSSSSSDSSSPAA 286
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAA 428
QVKT++V LP + +++V++L + +GE+TKI L P AK ++DFGFV F +A
Sbjct: 287 QVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL----PPAKAGHKRDFGFVHFAERSSA 342
Query: 429 VTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ K++ +E E D + + +++PL K H+ +
Sbjct: 343 L---KAVKGSEKYEIDGQV-LEVSMAKPLSDKKPDHSFK 377
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 148/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NR F FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 155/275 (56%), Gaps = 16/275 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +D+ +DLR++ +GE+ EVRL + TK+NKGFAF+ F E A++A+ +
Sbjct: 106 EVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIED 165
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
+++ G+ + SQ LF+GN+ K ++E L +K G V ++ + +D ++
Sbjct: 166 VQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKG-PGVINIEMFKDQHDP 224
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD-SFIDPGDEIMAQVKT 375
NRGF F+E+ + + A A ++L + F VD VS+A+ AQVKT
Sbjct: 225 NRNRGFLFVEYYNHACADYARQKLSSPN--FKVDGSQLTVSWAEPKGSTDASSAAAQVKT 282
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVTCA 432
++V LP + ++++++L +GE+TKI L P AK ++DFGFV F +A+
Sbjct: 283 IYVKNLPENVSKEKIKDLFDKHGEVTKIVL----PPAKAGHKRDFGFVHFAERSSAL--- 335
Query: 433 KSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
K++ +E E D + + +++PL K H+ R
Sbjct: 336 KAVKGSEKYEIDGQV-LEVSMAKPLADKKPDHSHR 369
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 156/276 (56%), Gaps = 18/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
+VF+GGL +D+ DDLR++ +GE+ EVRL + T +NKGFAF+ F + A++A+ +
Sbjct: 120 QVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKGFAFVTFTDKDAAQRAIED 179
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
+++ G+ + SQ LF+GN+ K ++E L +K G V ++ + +D ++
Sbjct: 180 VQDREYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKGKG-PGVVNIEMFKDQHDP 238
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD--SFIDPGDEIMAQVK 374
NRGF F+E+ + + A A +L R+ F VD VS+A+ DP AQVK
Sbjct: 239 NRNRGFLFVEYYNHACAEYARLKLSSRN--FKVDGSQLTVSWAEPKGQTDPSS-AAAQVK 295
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVTC 431
T++V LP + ++++++L +GE+TKI L P AK ++DFGFV F +A+
Sbjct: 296 TIYVKNLPENVSKEKIKDLFDKHGEVTKIVL----PPAKAGHKRDFGFVHFAERSSAL-- 349
Query: 432 AKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
K++ +E E D + + +++PL K H+ R
Sbjct: 350 -KAVKGSEKYEIDGQV-LEVSMAKPLADKKPDHSHR 383
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 148/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RL M+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLTMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F + E A+QAV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFERAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQQAVKL 222
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 CNNSEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKV-TEGLNDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L ++ E+ + + +G++ +++ K KD+ F+ F+ D+AV +
Sbjct: 340 LFVRNLASAVTEELLEKTFSQFGKLERVK--------KLKDYAFIHFEERDSAVKALGDL 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG++ V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGEHIEIVFAK--PPDQKRKERKAQR 420
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 158/318 (49%), Gaps = 41/318 (12%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P N+G+AF+ F E A+QAV E
Sbjct: 164 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQQAVKE 223
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK V S + LF+GNI K+ KE + E+ + ++ + ++
Sbjct: 224 LDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKL-TAGLTEVIIYSSPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V+
Sbjct: 283 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVRV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E+ + YG I +++ K KD+ FV F+ D AV +
Sbjct: 341 LYVKNLTQDCSEEKLKEVFEQYGNIERVK--------KIKDYAFVHFEERDNAVKAMNEL 392
Query: 436 NNAELG-----------EGDNKAK---VRARLSRPLQRGKGK------HAS--------R 467
N E+G D K K +RAR R Q +G+ H S R
Sbjct: 393 NGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMFQMFQGRSGGSPSHPSMMGGPMPIR 452
Query: 468 GDFRSGRGTGRATRGSWG 485
G + RGTG RG G
Sbjct: 453 GPGQGPRGTGAGMRGQMG 470
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 14/257 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 199 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 258
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 259 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 317
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 318 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 375
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 376 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 427
Query: 436 NNAELGEGDNKAKVRAR 452
N +L EG+N V A+
Sbjct: 428 NGKDL-EGENIEIVFAK 443
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 14/257 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 203 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 262
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 263 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 321
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 322 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 379
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 380 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 431
Query: 436 NNAELGEGDNKAKVRAR 452
N +L EG+N V A+
Sbjct: 432 NGKDL-EGENIEIVFAK 447
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 151/277 (54%), Gaps = 10/277 (3%)
Query: 180 EEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKG 239
E +H E+ R EV++GG+ D +DLR VGEVTEVRLM + +NK
Sbjct: 98 ERKNHAELLA--RPPHGSEVYIGGIPHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKR 155
Query: 240 FAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKH 299
FAF+ F +V+ A +A+ EL N GK+ + +Q LFLGNI ++W +E L++ +
Sbjct: 156 FAFVTFRSVDLASKAIDELNNTEFKGKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAE 215
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
G V + LV+D N+GFAF+++ + + A + +++ D G + P VS+A
Sbjct: 216 VG-PGVTAVQLVKDMKTSN-NKGFAFIDYYNTACAEYSRQKMVNPDFKLGDNAPT-VSWA 272
Query: 360 DSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGF 419
+ + +QVK ++V LP + +D++++L +++G+ITK+ L P ++ GF
Sbjct: 273 EP-KNADSSASSQVKAIYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGF 331
Query: 420 VTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
V F +A+ K++ N E E D + V L++P
Sbjct: 332 VHFAERSSAM---KALKNTERYELDGQV-VECSLAKP 364
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 38/256 (14%)
Query: 108 GGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENA 167
GG+ +D E ED++ E+VGE E L +G+ + + +
Sbjct: 118 GGIPHDASE---EDLRGFC--------ESVGEVTEVRLMKGKDSNENKRFAFVTFRSVDL 166
Query: 168 GEEAERPEMVDAEEHDHHEMFQERRK----RKEFEVFVGGLDKDVVGDDLRKVFSQVGE- 222
+A +E ++ E +R K + ++ +F+G + + +DLRKV ++VG
Sbjct: 167 ASKA-------IDELNNTEFKGKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEVGPG 219
Query: 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN------------GKQCGV 270
VT V+L+ + +T NKGFAF+ + A + ++ NP K
Sbjct: 220 VTAVQLVKDMKTSNNKGFAFIDYYNTACAEYSRQKMVNPDFKLGDNAPTVSWAEPKNADS 279
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ S +++ N+ K T++ LK+ +H+G + + L + NR F+ F+
Sbjct: 280 SASSQVKAIYVKNLPKNVTQDQLKKLFEHHG--KITKVVLPPAKPGQEKNR-IGFVHFAE 336
Query: 331 RSDAMDAFKRLQKRDV 346
RS AM A K ++ ++
Sbjct: 337 RSSAMKALKNTERYEL 352
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 16/294 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L F + G + ++RLMM+P + N+G+AFL F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEAAQEAVKL 222
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 CNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NLVTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ + + +G + +++ K KD+ FV F+ D AV +
Sbjct: 340 LFVRNLANSVTEEILEKAFGQFGNLERVK--------KLKDYAFVHFNDRDGAVKALTEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSP 489
N EL EG++ V A+ P Q+ K + A R ++ G +P P
Sbjct: 392 NGKEL-EGEHIEIVFAK--PPDQKRKERKAQRQAAKTQMYDDYYYYGPPQMPPP 442
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 147/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F T E A+QAV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQQAVKL 222
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L +
Sbjct: 223 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKV-TEGLNDVILYLQPVD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NLVTVEWADPLEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L +S E+ + + +G++ +++ K KD+ F+ F+ D AV +
Sbjct: 340 LFVRNLASSVTEELLEKAFSQFGKLERVK--------KLKDYAFIHFEERDGAVKALADL 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG++ V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGEHIEIVFAK--PPDQKRKERKAQR 420
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 149/273 (54%), Gaps = 17/273 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV-K 374
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+V K
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVMK 339
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV +
Sbjct: 340 VLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 391
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 MNGKDL-EGENIEIVFAK--PPDQKRKERKAQR 421
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 146/272 (53%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 167 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 226
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 227 YNNYEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 285
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+M++VK
Sbjct: 286 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMSKVKV 343
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD AV +
Sbjct: 344 LFVRNLANTVTEEILEKAFGQFGKLERVK--------KLKDYAFIHFDERVGAVKAMDEM 395
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N EL EG+N V A+ P Q+ K + A R
Sbjct: 396 NGKEL-EGENIEIVFAK--PPDQKRKERKAQR 424
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 143/260 (55%), Gaps = 17/260 (6%)
Query: 186 EMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRF 245
EMF+ EVFVG + +D+ D+L +F G + ++RLMM+P + +N+G+AF+ +
Sbjct: 156 EMFKGTHPGIGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITY 215
Query: 246 ATVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYG--V 302
+ A++AV N I GK GV S ++ LF+G+I K T+E++ L+ +G
Sbjct: 216 CNKDDAQKAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVT 272
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADS 361
+ ++D+ L +++ NRGF FLE+ A A +RL V ++G P V +AD
Sbjct: 273 EGLQDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NPVTVEWADP 330
Query: 362 FIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVT 421
+P E+MA+VK +FV L + E+ + + +G++ +++ K KD+ FV
Sbjct: 331 VAEPDPEVMAKVKVLFVRKLATAVTEELLEKTFSQFGKLERVK--------KLKDYAFVH 382
Query: 422 FDTHDAAVTCAKSINNAELG 441
F+ DAAV + +N ELG
Sbjct: 383 FEERDAAVQAMEGMNGKELG 402
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 153/283 (54%), Gaps = 17/283 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
+VFVG + +D+ D++ +F + G++ ++RLMM+P + N+G+AF+ F E A++AV +
Sbjct: 175 QVFVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPLSGLNRGYAFVTFCDREGAQEAVKQ 234
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTK-EALKEKLKHYGVDNVEDLTLVEDSN 315
L N I GK GV S + LF+G+I KT +K E L+E KH G + D+ +
Sbjct: 235 LDNHEIRKGKHLGVCISVANHRLFVGSIPKTKSKDEILEEFNKHVG--GLTDVIIYHMPE 292
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAFL F S A A +RL + + V +AD +P +E MA+VK
Sbjct: 293 DRKKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNSNVTVDWADPQEEPDEETMAKVKV 352
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L +E++++E + +G + +++ K KD+ FV F+ DAAV + +
Sbjct: 353 LYVRNLTPDAEEEKLKEAFQAFGTVERVK--------KLKDYCFVHFEERDAAVKAMEEL 404
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGR 478
N E+ EG + V L++P K K R R GR + R
Sbjct: 405 NGKEV-EG---SVVDISLAKPPSENK-KKKERQQTRGGRSSNR 442
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 148/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F T E A +AV
Sbjct: 118 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAASEAVNL 177
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 178 CNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQMVEEFAKV-TEGLNDVILYHQPDD 236
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 237 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NAVTVEWADPIEEPDSEVMAKVKV 294
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ L K++G+ ++E + + KD+ F+ FD D+AV +
Sbjct: 295 LFVRNLANSVTEEI---LEKSFGQFGRLERVKKL-----KDYAFIHFDERDSAVKALAEM 346
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG++ V A+ P Q+ K + A R
Sbjct: 347 NGKDL-EGEHIDIVFAK--PPDQKRKERKAQR 375
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 148/273 (54%), Gaps = 16/273 (5%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 10 IQIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 69
Query: 257 ELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSN 315
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L +
Sbjct: 70 LYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPD 128
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRG FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 129 DKKKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVK 186
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV +
Sbjct: 187 VLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 238
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+N +L EG+N V A+ P Q+ K + A R
Sbjct: 239 MNGKDL-EGENIEIVFAK--PPDQKRKERKAQR 268
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 207/439 (47%), Gaps = 58/439 (13%)
Query: 134 DENVGEEEEDDLAE---GEMEDVPEEHGQGEE---EVENAGEEAERPEMVDAEEHDHHEM 187
++N E E +D + G+MEDV EE + ++ ++E A ++ + P +D E+ + +
Sbjct: 28 NQNAEEREVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSH 87
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
EVF+GGL +DV +DLR + ++GE+ EVRLM + + +KG+AF+ F T
Sbjct: 88 LLSLPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKT 146
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+ A++A+ EL + GK + S+ + LF+GNI K WT++ ++ ++ G
Sbjct: 147 KDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPG---- 202
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDP- 365
D N NRGFAF+ + ++A + R + D F ++ A V++AD P
Sbjct: 203 -----DPTNTTRNRGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 255
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFD 423
AQVK ++V +P + ++++EL + +GE+TKI P K ++DFGFV +
Sbjct: 256 HSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIV----TPPGKGGKRDFGFVHYA 311
Query: 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGK----------------HASR 467
+A+ K E+ N + L++P K H +
Sbjct: 312 ERSSALKAVKDTERYEV----NGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 367
Query: 468 GDFRS----GRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRP-VPVRDRRPIM 522
G F + G G GS+ P + GR A G ++ P + V ++P M
Sbjct: 368 GGFAAAPYGAMGAGLGIAGSFSQP---MIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGM 424
Query: 523 SMTARARPMPPPPPRSYDR 541
M A PP PR DR
Sbjct: 425 PMAA----APPQRPRRNDR 439
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 16/294 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F T E A+QAV
Sbjct: 162 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQQAVKL 221
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 222 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKV-TEGLNDVILYHQPDD 280
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 281 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NLVTVEWADPIEDPDPEVMAKVKV 338
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L ++ E+ + + +G++ +++ K KD+ F+ F+ ++AV +
Sbjct: 339 LFVRNLASTVTEEILEKTFSQHGKLERVK--------KLKDYAFIHFEERESAVKALTDL 390
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSP 489
N +L EG++ V A+ P Q+ K + A R ++ G +P P
Sbjct: 391 NGKDL-EGEHIEIVFAK--PPDQKRKERKAQRQAAKTQMYDDYYYYGPPHMPPP 441
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 158/318 (49%), Gaps = 41/318 (12%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P N+G+AF+ F E A+QAV E
Sbjct: 164 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQQAVRE 223
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK V S + LF+GNI K+ KE + E+ + ++ + ++
Sbjct: 224 LDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKL-TAGLTEVIIYSSPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V+
Sbjct: 283 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVRV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + YG I +++ K KD+ FV F+ D AV +
Sbjct: 341 LYVKNLTQDCSEEKLKESFEQYGNIERVK--------KIKDYAFVHFEERDNAVKAMNEL 392
Query: 436 NNAELG-----------EGDNKAK---VRARLSRPLQRGKGK------HAS--------R 467
N E+G D K K +RAR R +Q +G+ H S R
Sbjct: 393 NGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMFQGRSGGSPSHPSMMGGPMPVR 452
Query: 468 GDFRSGRGTGRATRGSWG 485
G + RGTG RG G
Sbjct: 453 GPGQGPRGTGAGMRGQMG 470
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 158/318 (49%), Gaps = 41/318 (12%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P N+G+AF+ F E A+QAV E
Sbjct: 164 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQQAVRE 223
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK V S + LF+GNI K+ KE + E+ + ++ + ++
Sbjct: 224 LDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKL-TAGLTEVIIYSSPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V+
Sbjct: 283 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVRV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + YG I +++ K KD+ FV F+ D AV +
Sbjct: 341 LYVKNLTQDCSEEKLKESFEQYGNIERVK--------KIKDYAFVHFEERDNAVKAMNEL 392
Query: 436 NNAELG-----------EGDNKAK---VRARLSRPLQRGKGK------HAS--------R 467
N E+G D K K +RAR R +Q +G+ H S R
Sbjct: 393 NGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMFQGRSGGSPSHPSMMGGPMPVR 452
Query: 468 GDFRSGRGTGRATRGSWG 485
G + RGTG RG G
Sbjct: 453 GPGQGPRGTGAGMRGQMG 470
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 146/275 (53%), Gaps = 18/275 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KDV D+L +F + G++ ++RLMM+P T N+G+ F+ F A +AV +
Sbjct: 162 EVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNRGYCFITFCDKPGALEAVKQ 221
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK V S + LF+GNI K+ +K+ + E+ +++ D+ + +
Sbjct: 222 LDNYQIKPGKSIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKK-TEDLTDVIIYRSAEK 280
Query: 317 EGM-NRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
E NRGFAFLE+ S A A ++L R ++G D V +AD DP + M++VK
Sbjct: 281 ENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCD--VIVDWADPIDDPDSDTMSKVK 338
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
++V L + ED ++E YG++ +++ K KD+GF+ F+ D AV +
Sbjct: 339 VLYVRNLTSDVTEDTLKEKFGEYGKVERVK--------KIKDYGFIHFEERDDAVKAMEG 390
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKGKHASRGD 469
+N +LG K ++ L++P K K + D
Sbjct: 391 MNGQKLG----KLEMEVSLAKPPSENKKKEQRKRD 421
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 148/270 (54%), Gaps = 19/270 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KDV D+L +F + G++ ++RLMM+P T+ N+G+ F+ F T E A +A T+
Sbjct: 159 EVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPLTQFNRGYCFITFCTKEGAEEA-TK 217
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK V S + LF+GNI K+ +K+ + E+ + + D+ + +
Sbjct: 218 LDNYAIKPGKNIKVNISVANQRLFVGNIPKSKSKDEIMEEFSK-KTEGLVDVIIYRSAEK 276
Query: 317 EGM-NRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
E NRGFAFLE+ S A A ++L R ++ D V +AD +P DE M++VK
Sbjct: 277 ENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCD--VIVDWADPVDNPDDETMSKVK 334
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
++V L + ED ++E +GE KIE A+ K KD+GF+ F+ D A+ ++
Sbjct: 335 VLYVRNLTSEVTEDIMKE---KFGEFGKIERAK-----KVKDYGFIHFEDRDDAIKAMQA 386
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKGKH 464
+N ++G K ++ L++P K K
Sbjct: 387 MNGQKIG----KLEIEVSLAKPPSENKKKE 412
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKR 124
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 125 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 242 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 293
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 294 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 322
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 148/263 (56%), Gaps = 15/263 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +DV +DLR + ++GE+ EVRLM + + +KG+AF+ F T + A++A+ +
Sbjct: 116 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIED 175
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L + GK + S+ + LF+GNI K WT++ ++ +++ G VE++ L++D N
Sbjct: 176 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIENVG-PGVENIELIKDPANT 234
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDP-GDEIMAQVKT 375
NRGFAF+ + ++A + R + D F ++ A V++AD P AQVK
Sbjct: 235 TRNRGFAFVLY--YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKA 292
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAK 433
++V +P + ++++EL + +GE+TKI P K ++DFGFV + +A+ K
Sbjct: 293 LYVKNIPENTSTEQLKELFQRHGEVTKIV----TPPGKGGKRDFGFVHYAERSSALKAVK 348
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
E+ N + L++P
Sbjct: 349 DTERYEV----NGQPLEVVLAKP 367
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 146/272 (53%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F + E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQEAVKL 222
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GKQ GV S ++ LF+G+I K+ TKE + E+ + + D+ L +
Sbjct: 223 CNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYLQPQD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NMVTVEWADPMEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ + + YG + +++ K KD+ F+ F+ D AV + +
Sbjct: 340 LFVRNLANSVTEEILEKAFSEYGNLERVK--------KLKDYAFIHFEERDGAVKALEEL 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N EL EG+ V A+ P Q+ K + A R
Sbjct: 392 NGKEL-EGEPIEIVFAK--PPDQKRKERKAQR 420
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 146/279 (52%), Gaps = 16/279 (5%)
Query: 166 NAGEEAERPEMVDAEEHDHHEMFQERRKRKEF--EVFVGGLDKDVVGDDLRKVFSQVGEV 223
NAG+E + E+ D + + E R EV++GG+ D +DLR VGEV
Sbjct: 82 NAGDETK------VEDEDEQKKYDELLARPPHGSEVYIGGIPNDASEEDLRDFCESVGEV 135
Query: 224 TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGN 283
TEVR+M + +N+GFAF+ F +V+ A A+ EL N GK+ + SQ LFL N
Sbjct: 136 TEVRIMREKDSSENRGFAFVTFRSVDLASTAIGELNNTEFKGKKIKCSTSQAKHRLFLSN 195
Query: 284 ICKTWTKEALKEKLKHY--GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
I ++W ++ L++ + GV NV+ + SN NRG+AF+E+ + + A + +++
Sbjct: 196 IPRSWGEDGLRKIVAEVGPGVTNVQLVKEKSSSN----NRGYAFIEYYNNACAEYSRQKM 251
Query: 342 QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEIT 401
G + PA VS+AD + +QVK ++V LP + +D++++L + +G+IT
Sbjct: 252 MDPKFKLGDNAPA-VSWADP-KNADSSASSQVKALYVKNLPKTVTQDQLKKLFERHGKIT 309
Query: 402 KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
K+ L ++ GFV F +A+ K EL
Sbjct: 310 KVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYEL 348
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 14/219 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVGGL + LR+VFS GE+ ++R+M + Q +KGF F+RFA E A A +
Sbjct: 71 EVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYTAKRQ 129
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
+ GK+ V S D DTLF GN+CK W+ E E+L H +V + L SN +
Sbjct: 130 KNGIELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEF-EELIHKTFKDVISVDLATASNLD 188
Query: 318 G------MNRGFAFLEFSSRSDAMDAFKRLQKRDVLF-GVDRPAKVSFA--DSFIDPGDE 368
+NRGFAF+ FSS A + + D L GV PA +++A +S +D G+
Sbjct: 189 SSTSKRRLNRGFAFVRFSSHGAAARVLRIGSRTDFLLGGVLHPA-INWAERESNVDAGE- 246
Query: 369 IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
MA++KT FV LPA+ +ED +++L +GE+ ++ ++R
Sbjct: 247 -MAKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAVSR 284
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 160/298 (53%), Gaps = 23/298 (7%)
Query: 161 EEEVENAGEEAER-PEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQ 219
+ E N +E ++ E++ H EV+VGG+ +D DDLR+
Sbjct: 371 QNETINDEDETKKHAELLALPPHGS-------------EVYVGGIPQDSSEDDLRRFCES 417
Query: 220 VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTL 279
+GEVTEVR+M + ++ +NKGFAF+ F +VE A +A+ EL N GK+ + SQ L
Sbjct: 418 IGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRL 477
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
F+GN+ ++W +E LK+ + G V + LV+D N NRGFAF+++ + + A +
Sbjct: 478 FIGNVPRSWGEEDLKKVVTEIG-PGVTAVELVKDMKNTSNNRGFAFIDYYNHACA--EYS 534
Query: 340 RLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
R + + F +D A VS+AD + +QVK V+V LP + ++++++L ++G
Sbjct: 535 RQKMMNPKFKLDDNAPTVSWADP-KNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHG 593
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
+ITK+ L ++ GFV F +A+ K++ N E E D + + L++P
Sbjct: 594 KITKVVLPPAKSGQEKNRIGFVHFSERSSAM---KALKNTEKYELDGQV-LECSLAKP 647
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 173/321 (53%), Gaps = 28/321 (8%)
Query: 164 VENAGEEAERPEMVDAEEHDHHEMFQERRKRKEF--------EVFVGGLDKDVVGDDLRK 215
+E A EEA + +D + D + E+RK E EVF+GGL +D +DLR+
Sbjct: 70 MEVAKEEAAAGDEMDKDGTDGPKDDDEKRKWDELLALPQQGCEVFIGGLPRDTTEEDLRE 129
Query: 216 VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275
+ +GE+ EVRLM + TK+NKGFAF+ F + A++A+ EL + G+ + SQ
Sbjct: 130 LCEPLGEIHEVRLMKDKDTKENKGFAFVTFTAKDVAQRAIEELHDKDHKGRTLRCSLSQA 189
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
LF+GN+ K +++ L +K G V ++ + +D ++ NRGF F+E+ + + A
Sbjct: 190 KHRLFVGNVPKGLSEDELTSIIKGKG-PGVVNIEMFKDLHDPSRNRGFLFVEYYNHACAD 248
Query: 336 DAFKRLQKRDVLFGVD-RPAKVSFAD-----SFIDPGDEIMAQVKTVFVDGLPASWDEDR 389
+ ++L D F VD VS+A+ S AQVKT++V LP + +++
Sbjct: 249 YSRQKLSSPD--FKVDGSQLTVSWAEPKGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEK 306
Query: 390 VRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446
V++L + +GE+TKI L P AK ++DFGFV F +A+ K++ +E E D +
Sbjct: 307 VKDLFEVHGEVTKIVL----PPAKAGHKRDFGFVHFAERSSAL---KAVKGSEKYEIDGQ 359
Query: 447 AKVRARLSRPLQRGKGKHASR 467
+ +++PL K H+ R
Sbjct: 360 V-LEVSMAKPLSDKKPDHSVR 379
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 160/298 (53%), Gaps = 23/298 (7%)
Query: 161 EEEVENAGEEAER-PEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQ 219
+ E N +E ++ E++ H EV+VGG+ +D DDLR+
Sbjct: 415 QNETINDEDETKKHAELLALPPHGS-------------EVYVGGIPQDSSEDDLRRFCES 461
Query: 220 VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTL 279
+GEVTEVR+M + ++ +NKGFAF+ F +VE A +A+ EL N GK+ + SQ L
Sbjct: 462 IGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRL 521
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
F+GN+ ++W +E LK+ + G V + LV+D N NRGFAF+++ + + A +
Sbjct: 522 FIGNVPRSWGEEDLKKVVTEIG-PGVTAVELVKDMKNTSNNRGFAFIDYYNHACA--EYS 578
Query: 340 RLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
R + + F +D A VS+AD + +QVK V+V LP + ++++++L ++G
Sbjct: 579 RQKMMNPKFKLDDNAPTVSWADP-KNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHG 637
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
+ITK+ L ++ GFV F +A+ K++ N E E D + + L++P
Sbjct: 638 KITKVVLPPAKSGQEKNRIGFVHFSERSSAM---KALKNTEKYELDGQV-LECSLAKP 691
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 146/272 (53%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F T E A +AV
Sbjct: 174 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAASEAVNL 233
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 234 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKV-TEGLNDVILYHQPDD 292
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 293 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 350
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ + + +G++ +++ K KD+ FV FD DAAV +
Sbjct: 351 LFVRNLANSVTEEILEKSFSQFGKLERVK--------KLKDYAFVHFDERDAAVKALAQM 402
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N L EG++ V A+ P Q+ K + A R
Sbjct: 403 NGKVL-EGEHIDIVFAK--PPDQKRKERKAQR 431
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 65 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKR 124
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 125 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 242 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 293
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 294 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 322
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 160/317 (50%), Gaps = 45/317 (14%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P + N+G+AF+ F E A+QAV E
Sbjct: 155 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQQAVRE 214
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYG--VDNVEDLTLVEDS 314
L N I GK V S + LF+GNI K+ KE E L +G + ++ +
Sbjct: 215 LDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKE---EILDEFGKLTAGLTEVIIYSSP 271
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V
Sbjct: 272 DDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCD--IIVDWADPQEEPDEQTMSKV 329
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
+ ++V L E++++E + YG+I +++ K KD+ F+ F+ D AV
Sbjct: 330 RVLYVRNLTQDCSEEKLKESFEQYGKIERVK--------KIKDYAFIHFEDRDNAVRAMN 381
Query: 434 SINNAELG-----------EGDNKAK---VRARLSRPLQRGKGK------HAS------- 466
+N E+G D K K +RAR R +Q +G+ H S
Sbjct: 382 ELNGKEMGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMLQGRGGGSPSHPSMMGGPMP 441
Query: 467 -RGDFRSGRGTGRATRG 482
RG + RGTG RG
Sbjct: 442 VRGPAQGPRGTGAGMRG 458
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 14/257 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRAR 452
N +L EG+N V A+
Sbjct: 392 NGKDL-EGENIEIVFAK 407
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 146/272 (53%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F + E A++AV
Sbjct: 167 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQEAVKL 226
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GKQ GV S ++ LF+G+I K+ TKE + E+ + + D+ L +
Sbjct: 227 CNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYLQPQD 285
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 286 KSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NMVTVEWADPMEDPDPEVMAKVKV 343
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ + + YG + +++ K KD+ F+ F+ D AV + +
Sbjct: 344 LFVRNLANSVTEEILEKSFSEYGNLERVK--------KLKDYAFIHFEERDGAVKALEEM 395
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N EL EG+ V A+ P Q+ K + A R
Sbjct: 396 NGKEL-EGEPIEIVFAK--PPDQKRKERKAQR 424
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 152/277 (54%), Gaps = 20/277 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +D +DLR++ GE+ EVRLM + +TK+NKGFAF+ F E A++A+ E
Sbjct: 105 EVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRAIEE 164
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL--KHYGVDNVEDLTLVEDSN 315
L + G+ + SQ LF+GN+ K +E L++ + K GV N+E + +D +
Sbjct: 165 LHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGPGVVNIE---MFKDLH 221
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD-SFIDPGDEIMAQV 373
+ NRGF F+E+ + + A A ++L + F VD VS+A+ AQV
Sbjct: 222 DPSRNRGFLFVEYYNHACADYARQKLSAPN--FKVDGSQLTVSWAEPKGSSDSSSAAAQV 279
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVT 430
KT++V LP + +++++E+ + +GE+TK+ L P AK ++DFGFV F +A+
Sbjct: 280 KTIYVKNLPENASKEKIKEIFEKHGEVTKVVL----PPAKDGHKRDFGFVHFAERSSALK 335
Query: 431 CAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
K E N + +++PL K H+ +
Sbjct: 336 AVKGSEKYEF----NGQVLEVSMAKPLGDKKPDHSFK 368
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 143/261 (54%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L + I GK+ GVT S ++ LF+GNI K ++ L E+ + + ++ + ++
Sbjct: 267 LNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDD 325
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 326 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 383
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 384 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 435
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 436 NGKEIG----ASNIEVSLAKP 452
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 139/248 (56%), Gaps = 17/248 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F G + ++RLMM+P + +N+G+AF+ + + A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQKAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYG--VDNVEDLTLVEDS 314
N I GK GV S ++ LF+G+I K T+E++ L+ +G + ++++ L
Sbjct: 226 CDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESI---LEDFGKVTEGLQEVILYHQP 282
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G P V +AD +P E+MA+V
Sbjct: 283 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NPVTVEWADPVAEPDPEVMAKV 340
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ DAAV +
Sbjct: 341 KVLFVRKLATAVTEELLEKTFSQFGKLERVK--------KLKDYAFVHFEERDAAVKAME 392
Query: 434 SINNAELG 441
+N ELG
Sbjct: 393 EMNGKELG 400
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 18/275 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +D+ +DLR++ +GE+ EVRL + TK+NKGFAF+ F E A++A+ +
Sbjct: 106 EVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIED 165
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
+++ G+ + SQ LF+GN+ K ++E L +K G + D N
Sbjct: 166 VQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGPGVINIEMFKHDPNR- 224
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD-SFIDPGDEIMAQVKT 375
NRGF F+E+ + + A A ++L + F VD VS+A+ AQVKT
Sbjct: 225 --NRGFLFVEYYNHACADYARQKLSSPN--FKVDGSQLTVSWAEPKGSTDASSAAAQVKT 280
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVTCA 432
++V LP + ++++++L +GE+TKI L P AK ++DFGFV F +A+
Sbjct: 281 IYVKNLPENVSKEKIKDLFDKHGEVTKIVL----PPAKAGHKRDFGFVHFAERSSAL--- 333
Query: 433 KSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
K++ +E E D + + +++PL K H+ R
Sbjct: 334 KAVKGSEKYEIDGQV-LEVSMAKPLADKKPDHSHR 367
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 169/319 (52%), Gaps = 17/319 (5%)
Query: 143 DDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVG 202
D EG +D E + + E A +E + V+ EE + H EVF+G
Sbjct: 53 DSKTEGSQKDQSPEADRIVADTEPAEDEQKPTASVNEEEKEKHAQLLALPPHGS-EVFIG 111
Query: 203 GLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV 262
GL +DV+ D+LR + +GE+ E+RLM + + ++KGFAF+ F + E AR+A+ EL +
Sbjct: 112 GLPRDVIEDELRDLCEPIGEIFEIRLMKDKDSGESKGFAFVAFKSKEVARKAIEELHSKD 171
Query: 263 INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG 322
GK + S+ + LF+GN+ K T++ ++ ++ G VE + L++D NRG
Sbjct: 172 YKGKTLRCSISETKNRLFIGNVPKNLTEDEFRKIIEEVG-PGVEVIELIKDPQTPTRNRG 230
Query: 323 FAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPGDEIMA--QVKTVFVD 379
FAF+ + ++A + R + + F +D VS+AD P D A QVK ++V
Sbjct: 231 FAFILY--YNNACADYSRQKMLNANFKLDGHTPTVSWADPKGTPPDHSAASSQVKALYVK 288
Query: 380 GLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINN 437
+P + ++++ L + +G++TK+ MP K ++DFGF+ + +A+ K++ +
Sbjct: 289 NIPENTSTEQLKGLFQRHGDVTKVV----MPPGKAGKRDFGFIHYAERSSAL---KAVRD 341
Query: 438 AELGEGDNKAKVRARLSRP 456
AE E D + + L++P
Sbjct: 342 AEKYEIDGQV-LEVVLAKP 359
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 146/348 (41%), Gaps = 54/348 (15%)
Query: 45 EEKAVVEDDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDERLD--LDDNEPEY 102
EE+ +E+DN ++D+ + ++ + +E+V+E +D + + D PE
Sbjct: 8 EERVDLEEDNYMEEIDDDVEDQLDEDGEDDAGDPHAEENVEEEYEDSKTEGSQKDQSPE- 66
Query: 103 EPEEYGGVDYDDKETEHEDVQEVGNEEDE----------HDDE--------NVGEEEEDD 144
+ D + E E + V EE E H E +V E+E D
Sbjct: 67 --ADRIVADTEPAEDEQKPTASVNEEEKEKHAQLLALPPHGSEVFIGGLPRDVIEDELRD 124
Query: 145 LAE--GE------MEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHH-EMFQERRKRK 195
L E GE M+D +G V +E R + + D+ + +
Sbjct: 125 LCEPIGEIFEIRLMKDKDSGESKGFAFVAFKSKEVARKAIEELHSKDYKGKTLRCSISET 184
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV-RLMMNPQT-KKNKGFAFLRF---ATVEQ 250
+ +F+G + K++ D+ RK+ +VG EV L+ +PQT +N+GFAF+ + A +
Sbjct: 185 KNRLFIGNVPKNLTEDEFRKIIEEVGPGVEVIELIKDPQTPTRNRGFAFILYYNNACADY 244
Query: 251 ARQAVTELK------NPVINGKQCGVTP------SQDSDTLFLGNICKTWTKEALKEKLK 298
+RQ + P ++ TP S L++ NI + + E LK +
Sbjct: 245 SRQKMLNANFKLDGHTPTVSWADPKGTPPDHSAASSQVKALYVKNIPENTSTEQLKGLFQ 304
Query: 299 HYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
+G D+T V + R F F+ ++ RS A+ A + +K ++
Sbjct: 305 RHG-----DVTKVVMPPGKAGKRDFGFIHYAERSSALKAVRDAEKYEI 347
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 143/261 (54%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 199 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 258
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L + I GK+ GVT S ++ LF+GNI K ++ L E+ + + ++ + ++
Sbjct: 259 LNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDD 317
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 318 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 375
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 376 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 427
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 428 NGKEIG----ASNIEVSLAKP 444
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 17/290 (5%)
Query: 151 EDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVG 210
+D + H E +VE+ E+ + E++ H EV++GG+
Sbjct: 96 DDAMQNHSSDEAKVEDEDEKRKHAELLSLPPHGS-------------EVYIGGIP-HASD 141
Query: 211 DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270
+DL+ + ++GEV EVR+M + +NKGF F+ F +VE A +A+ EL N GK+
Sbjct: 142 EDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKC 201
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ SQ LF+GN+ ++W E LK+ + G V + LV+D N NRGFAF+++ +
Sbjct: 202 SKSQAKHRLFIGNVPRSWGVEDLKKIVTEIG-PGVTGVELVKDMKNTNNNRGFAFIDYYN 260
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
+ A + +++ G + P VS+AD + +QVK V+V LP + ++++
Sbjct: 261 HACAEYSRQKMMSPTFKLGENAPT-VSWADP-KNAESSAASQVKAVYVKNLPKNVTQEQL 318
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
++L + +G+ITK+ L ++ GFV F A+ K+ EL
Sbjct: 319 KKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYEL 368
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 116/276 (42%), Gaps = 54/276 (19%)
Query: 113 DDKETEHED----------------------VQEVGNEEDEHDDENVGEEEEDDLAEGEM 150
D+ + E ED + +E+ + E +GE E + +G
Sbjct: 105 DEAKVEDEDEKRKHAELLSLPPHGSEVYIGGIPHASDEDLKSLCERIGEVAEVRIMKG-- 162
Query: 151 EDVPEEHGQG------EEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGL 204
+D E G G E A EE E + + + + + + +F+G +
Sbjct: 163 KDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKK-------IKCSKSQAKHRLFIGNV 215
Query: 205 DKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRF---ATVEQARQAVTE-- 257
+ +DL+K+ +++G VT V L+ + + T N+GFAF+ + A E +RQ +
Sbjct: 216 PRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPT 275
Query: 258 ----LKNPVING---KQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
P ++ K + + +++ N+ K T+E LK+ + +G + + L
Sbjct: 276 FKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHG--KITKVVL 333
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
+ + NR F+ F+ RS+AM A K ++ ++
Sbjct: 334 PPAKSGQEKNR-IGFVHFAERSNAMKALKNTERYEL 368
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 136/246 (55%), Gaps = 13/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F G + ++RLMM+P + +N+G+AF+ + + A++AV
Sbjct: 164 EVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQKAVKL 223
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K T+E++ E + ++++ L + ++
Sbjct: 224 CDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKV-TEGLQEVILYQQPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G P V +AD +P E+MA+VK
Sbjct: 283 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NPVTVEWADPVAEPDPEVMAKVKV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ DAAV +
Sbjct: 341 LFVRNLATAVTEELLEKTFAQFGKLERVK--------KLKDYAFVHFEERDAAVRAMDEM 392
Query: 436 NNAELG 441
N E+G
Sbjct: 393 NGKEVG 398
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 136/246 (55%), Gaps = 13/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F G + ++RLMM+P + +N+G+AF+ + + A++AV
Sbjct: 164 EVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQKAVKL 223
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K T+E++ E + ++++ L + ++
Sbjct: 224 CDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKV-TEGLQEVILYQQPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G P V +AD +P E+MA+VK
Sbjct: 283 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NPVTVEWADPVAEPDPEVMAKVKV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ DAAV +
Sbjct: 341 LFVRNLATAVTEELLEKTFAQFGKLERVK--------KLKDYAFVHFEERDAAVRAMDEM 392
Query: 436 NNAELG 441
N E+G
Sbjct: 393 NGKEVG 398
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 140/258 (54%), Gaps = 13/258 (5%)
Query: 186 EMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRF 245
E+FQ + EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F
Sbjct: 157 EVFQGAQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITF 216
Query: 246 ATVEQARQAVTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
+ A +AV N I +GK GV S ++ LF+G+I K T+E++ E +
Sbjct: 217 CGKDAAAEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKV-TEG 275
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFI 363
++++ L +++ NRGF FLE+ A A +RL V ++G P V +AD
Sbjct: 276 LQEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NPVTVEWADPVA 333
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+P ++MA+VK +FV L E+ + + +G++ +++ K KD+ FV F+
Sbjct: 334 EPDPDVMAKVKVLFVRKLATPVTEELLEKTFSAFGKLERVK--------KLKDYAFVHFE 385
Query: 424 THDAAVTCAKSINNAELG 441
DAAV +N ELG
Sbjct: 386 DRDAAVKAMSEMNGKELG 403
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 144/270 (53%), Gaps = 12/270 (4%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV++GG+ + DLR VGEV EVR+M + K+ KG+AF+ F T E A +A+ E
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALKE 158
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N G++ +PSQ LF+G++ K WT E +K+ + G V + L++D +
Sbjct: 159 LNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVG-PGVISVELLKDPQSS 217
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP-AKVSFADSFIDPGDEIMAQVKTV 376
NRGFAF+E+ + + A + R + + F +D A VS+AD + +QVK V
Sbjct: 218 SRNRGFAFIEYHNHACA--EYSRQKMSNSNFKLDNNDAIVSWADPR-NSESSSSSQVKAV 274
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+V LP + ++R++EL +++G+ITK+ L ++ +GFV F +A+ K+
Sbjct: 275 YVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTE 334
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHAS 466
E+ N + L++P K AS
Sbjct: 335 KYEI----NGQTLECSLAKPQADQKSSGAS 360
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 168/333 (50%), Gaps = 45/333 (13%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 168 EVFCGKIPKDMFEDELIPLFENCGVIWDLRLMMDPMTGTNRGYAFVTFTNREAAINAVRQ 227
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L + I GK+ GVT S ++ LF+GNI K ++ L E+ + + ++ + ++
Sbjct: 228 LNDFEIRKGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 287 KKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 344
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 345 LYVRNLTQDVTEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 396
Query: 436 NNAELGE-----------GDNKAK---VRARLSRPLQRGKGKHASRGDFRSGRGTGRATR 481
N E+G D K K +RAR R +Q +G R G G T
Sbjct: 397 NGKEVGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQG--------RPGIGNLSPTH 448
Query: 482 GSWGLPSPRSLPGRSARGIGSRLPPASVKRPVP 514
S +P +P G+R+P ++ P+P
Sbjct: 449 PSMMSITPMRIP-------GARMP---LRTPMP 471
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 162/321 (50%), Gaps = 32/321 (9%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P + N+G+AF+ F E A+QAV E
Sbjct: 161 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQQAVRE 220
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK V S + LF+GNI K+ KE + E+ + ++ + ++
Sbjct: 221 LDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKL-TAGLTEVIIYSSPDD 279
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V+
Sbjct: 280 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVRV 337
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + YG+I +++ K KD+ F+ F+ D AV +
Sbjct: 338 LYVRNLTQDCSEEKLKESFEQYGKIERVK--------KIKDYAFIHFEDRDNAVKAMNEL 389
Query: 436 NNAELG-----------EGDNKAK---VRARLSRPLQRGKGKHASRGDFRSGRGTGRATR 481
N E+G D K K +RAR R +Q +G RG F G+ +
Sbjct: 390 NGKEMGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMLQG----RGGFPFDSGS-PSHP 444
Query: 482 GSWGLPSPRSLPGRSARGIGS 502
G P P P + RG G+
Sbjct: 445 SMMGGPMPVRGPAQGPRGTGA 465
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 157/277 (56%), Gaps = 20/277 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +D +DLR++ GE+ EVRLM + +TK+NKGFAF+ F + A++A+ E
Sbjct: 108 EVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKDAAQRAIEE 167
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL--KHYGVDNVEDLTLVEDSN 315
L + G+ + SQ LF+GN+ K +E L++ + K GV N+E + +D +
Sbjct: 168 LHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGPGVVNIE---MFKDLH 224
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD-SFIDPGDEIMAQV 373
+ NRGF F+E+ + + A A ++L + F VD VS+A+ AQV
Sbjct: 225 DPSRNRGFLFVEYYNHACADYARQKLSAPN--FKVDGSQLTVSWAEPKGSSDSSSAAAQV 282
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVT 430
KT++V LP + +++++E+ + +GE+TK+ L P AK ++DFGFV F +A+
Sbjct: 283 KTIYVKNLPENASKEKIKEIFEKHGEVTKVVL----PPAKDGHKRDFGFVHFAERSSAL- 337
Query: 431 CAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
K++ +E E D + + +++PL K H+ +
Sbjct: 338 --KAVKGSEKYEFDGQV-LEVSMAKPLGDKKPDHSFK 371
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 146/272 (53%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F + E A++AV
Sbjct: 163 EIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQEAVKL 222
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 CNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NLVTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L E+ + + +G++ +++ K KD+ F+ F+ D AV + +
Sbjct: 340 LFVRNLANGVTEELLEKSFSEFGKLERVK--------KLKDYAFIHFEERDGAVKALEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N EL EG+ V A+ P Q+ K + A R
Sbjct: 392 NGKEL-EGEPIEIVFAK--PPDQKRKERKAQR 420
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 143/261 (54%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L + I GK+ GVT S ++ LF+GNI K ++ L E+ + + ++ + ++
Sbjct: 225 LNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHA-PGLYEVIIYSSPDD 283
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 284 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 341
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 342 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 393
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 394 NGKEIGASN----IEVSLAKP 410
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 17/284 (5%)
Query: 160 GEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQ 219
G++E+++A E VD E H E+ E V++GG+ + +DLR
Sbjct: 92 GDDEIKSAKGE------VDNENRRHAELLALPPHGSE--VYLGGIPNNASEEDLRGFCEP 143
Query: 220 VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTL 279
VGEVTEVR++ + + KG+AF+ F T E A +A+ EL N I G++ + SQ L
Sbjct: 144 VGEVTEVRILKGKDSAETKGYAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRL 203
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
F+ N+ +TW +E +K+ + G V + L +D N NRGFAF+E+ + + A +
Sbjct: 204 FISNVPRTWEEEDMKKVVTEIG-PGVNLVDLWKDPQNSSRNRGFAFIEYYNHACA--EYS 260
Query: 340 RLQKRDVLFGVDRPAKVSFADSFIDPGD---EIMAQVKTVFVDGLPASWDEDRVRELLKN 396
R + + F +D A S+ DP + +QVK V++ LP +D++REL
Sbjct: 261 RKKMSNPKFKLDNNASTV---SWADPKNVESSAASQVKAVYIKNLPKYMTQDQLRELFGQ 317
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
+G+ITK+ + + FGFV F +A+ K+ E+
Sbjct: 318 HGKITKVVIPPAKAGQENCRFGFVHFAERSSAMKALKNTEKYEI 361
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 47/293 (16%)
Query: 77 EDEVKESVDEYEKDER--LDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDD 134
+DE+K + E + + R +L P GG+ + E ED++
Sbjct: 93 DDEIKSAKGEVDNENRRHAELLALPPHGSEVYLGGIPNNASE---EDLRGFC-------- 141
Query: 135 ENVGEEEEDDLAEGEMEDVPEEHG------QGEEEVENAGEEAERPEMVDAEEHDHHEMF 188
E VGE E + +G +D E G + +E A EE E+ +
Sbjct: 142 EPVGEVTEVRILKG--KDSAETKGYAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQV 199
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRF- 245
+ R +F+ + + +D++KV +++G V V L +PQ + +N+GFAF+ +
Sbjct: 200 KHR-------LFISNVPRTWEEEDMKKVVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYY 252
Query: 246 --ATVEQARQAVTELKNPVING---------KQCGVTPSQDSDTLFLGNICKTWTKEALK 294
A E +R+ ++ K + N K + + +++ N+ K T++ L+
Sbjct: 253 NHACAEYSRKKMSNPKFKLDNNASTVSWADPKNVESSAASQVKAVYIKNLPKYMTQDQLR 312
Query: 295 EKLKHYG-VDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E +G + V ++ + N F F+ F+ RS AM A K +K ++
Sbjct: 313 ELFGQHGKITKV----VIPPAKAGQENCRFGFVHFAERSSAMKALKNTEKYEI 361
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 153/286 (53%), Gaps = 18/286 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
+VF+G + +D D+L VF + G + + RLM++P + KGFAF F+ ++A+ AV +
Sbjct: 153 QVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKK 212
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK+ GV S + LF+G+I KT +K+ + E+ + ++D+ + ++
Sbjct: 213 LDNKEIRPGKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKV-TNGLDDVIVYLSADQ 271
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+G NRGFAFLE+ S A A +RL + + V +AD +P D+ M +VK V
Sbjct: 272 KGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADPQEEPDDDAMKKVKVV 331
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
++ L S E++++E YG + +++ K KD+ FV F D A+ + +
Sbjct: 332 YLRNLSPSITEEKLKEEYSQYGAVDRVK--------KLKDYAFVHFTERDHALKAIEETD 383
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRG 482
E+ + K+ A L++P Q G K RG +SG G+ + RG
Sbjct: 384 GKEM----DGLKIEASLAKP-QPGN-KDRQRG--QSGFGSLNSRRG 421
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 137/248 (55%), Gaps = 17/248 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P T N+G+AF+ F + A+QAV E
Sbjct: 165 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFITFTNRDAAQQAVRE 224
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYG--VDNVEDLTLVEDS 314
L N I GK V S + LF+GNI K+ KE E L +G + ++ +
Sbjct: 225 LDNYEIKPGKSLKVNISVPNLRLFVGNIPKSKGKE---EILDEFGKLTAGLTEVIIYSSP 281
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V
Sbjct: 282 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGCD--IIVDWADPQEEPDEQTMSKV 339
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
+ ++V L E++++E + YG+I +++ K KD+ F+ F+ + AV +
Sbjct: 340 RVLYVRNLTQDCSEEKLKECFEQYGKIERVK--------KIKDYAFIHFEERECAVKAMR 391
Query: 434 SINNAELG 441
+N E+G
Sbjct: 392 ELNGKEMG 399
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 134/245 (54%), Gaps = 13/245 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F T E A++AV
Sbjct: 164 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKL 223
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TK+ + E+ + + D+ L ++
Sbjct: 224 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 283 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L ++ E+ + + +G++ +++ K KD+ F+ F+ D AV +
Sbjct: 341 LFVRNLASTVTEELLEKTFCQFGKLERVK--------KLKDYAFIHFEERDGAVKALAEL 392
Query: 436 NNAEL 440
+ +L
Sbjct: 393 HGKDL 397
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 145/272 (53%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F E A++AV
Sbjct: 170 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLSSLNRGYAFVTFCAKEAAQEAVKL 229
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK G S ++ LF+G+I K+ TKE + E+ D + D+ L ++
Sbjct: 230 CNNYEIRPGKHIGACISVANNRLFVGSIPKSKTKEQIVEEFSKV-TDGLNDVILYHQPDD 288
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLEF A A +RL V ++G+ V +AD DP E+MA+VK
Sbjct: 289 KKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGI--LVTVEWADPIEDPDPEVMAKVKV 346
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ + + +G++ +++ K KD+ F+ F+ + AV +
Sbjct: 347 LFVRNLANSVTEEILEKSFSAFGKLERVK--------KLKDYAFIHFEEREGAVKALDEM 398
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N EL EG+ V A+ P Q+ K + A R
Sbjct: 399 NGKEL-EGEPIEIVFAK--PPDQKRKERKAQR 427
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 145/261 (55%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P T N+G+AF+ F + + A AV E
Sbjct: 169 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAASNAVRE 228
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L + I NGK+ GVT S ++ LF+GNI K ++ L E+ + VE + + ++
Sbjct: 229 LNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKHAPGLVE-VIIYSSPDD 287
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++ D V +AD +P ++ M++VK
Sbjct: 288 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCD--IIVDWADPQEEPDEQTMSKVKV 345
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + +G + +++ K KD+ FV F+ D AV K +
Sbjct: 346 LYVRNLTQDTSEEKLKESFEQFGRVERVK--------KIKDYAFVHFEDRDNAVKAMKDL 397
Query: 436 NNAELGEGDNKAKVRARLSRP 456
+ E+G G N + L++P
Sbjct: 398 DGKEVG-GSN---IEVSLAKP 414
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 135/246 (54%), Gaps = 13/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F + A +AV
Sbjct: 168 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAAEAVKL 227
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K T+E++ E + ++++ L ++
Sbjct: 228 CDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKV-TEGLQEVILYHQPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G P V +AD +P ++MA+VK
Sbjct: 287 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NPVTVEWADPVAEPDPDVMAKVKV 344
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L E+ + + +G++ +++ K KD+ FV F+ DAAV +
Sbjct: 345 LFVRKLAIPVTEELLEKTFSAFGKLERVK--------KLKDYAFVHFEDRDAAVKAMAEM 396
Query: 436 NNAELG 441
N ELG
Sbjct: 397 NGKELG 402
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 147/275 (53%), Gaps = 19/275 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP---QTKKNKGFAFLRFATVEQARQA 254
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++A
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLTGLNRGYAFVTFCTKEAAQEA 222
Query: 255 VTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L
Sbjct: 223 AKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQ 281
Query: 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQ 372
+++ NRGF F E+ A A +RL V ++G V +AD DP E+MA+
Sbjct: 282 PDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAK 339
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
VK +FV L + E+ + + +G++ +++ K KD+ F+ FD D AV
Sbjct: 340 VKVLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAM 391
Query: 433 KSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ +N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 EEMNGKDL-EGENIEIVFAK--PPDQKRKERKAQR 423
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 133/245 (54%), Gaps = 13/245 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + KD+ D+L +F + G + ++RLMM+P + N+G+AF+ F + A +V E
Sbjct: 168 EVFVGKIPKDMFEDELIPLFEKCGRIWDLRLMMDPLSGLNRGYAFITFCNRDGAHNSVRE 227
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GVT S ++ LF+GNI K KE L E+ + + ++ + ++
Sbjct: 228 LDNYEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELYEEFSKHA-PGLTEVIIYSSPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++ D V +AD +P E MA+VK
Sbjct: 287 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCD--IIVDWADPQEEPDQETMAKVKV 344
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L A E+R++EL + +G + +++ K KD+ FV F+ D AV +
Sbjct: 345 LYVRNLTADVTEERLKELFEQHGRVERVK--------KIKDYAFVHFEERDHAVKAMNQL 396
Query: 436 NNAEL 440
+L
Sbjct: 397 QGKDL 401
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 135/245 (55%), Gaps = 13/245 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + KD+ D+L +F + G++ ++RLMM+P + N+G+AF+ F E A +V E
Sbjct: 161 EVFVGKIPKDMFEDELIPLFEKCGKIWDLRLMMDPLSGLNRGYAFITFCNREGAHNSVRE 220
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GVT S ++ LF+GNI K KE L E+ + + ++ + ++
Sbjct: 221 LDNHEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELFEEFSKHA-PGLTEVIIYSSPDD 279
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++ D V +AD +P +E MA+VK
Sbjct: 280 KKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCD--IIVDWADPQEEPDEETMAKVKV 337
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++EL + +G + +++ K KD+ FV F+ D AV + +
Sbjct: 338 LYVRNLTTDVTEEKLKELFEAHGRVERVK--------KIKDYAFVHFEERDHAVRAMEQL 389
Query: 436 NNAEL 440
+L
Sbjct: 390 QGKDL 394
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 142/261 (54%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F T + A+QAV +
Sbjct: 178 EVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQQAVQK 237
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ KE + E+ VE + + ++
Sbjct: 238 LDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVE-VIIYSSPDD 296
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 297 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 354
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + YG++ +++ K KD+ F+ F+ + AV + +
Sbjct: 355 LYVRNLTQEISEEKLKEAFEAYGKVERVK--------KIKDYAFIHFEDRENAVKAMEEL 406
Query: 436 NNAELGEGDNKAKVRARLSRP 456
+ E+G G N + L++P
Sbjct: 407 DGKEMG-GSN---IEVSLAKP 423
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 127/465 (27%), Positives = 216/465 (46%), Gaps = 76/465 (16%)
Query: 134 DENVGEEEEDDLAE---GEMEDVPEEHGQGEE---EVENAGEEAERPEMVDAEEHDHHEM 187
++N E E +D + G+MEDV EE + ++ ++E A ++ + P +D E+ + +
Sbjct: 48 NQNAEEREVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSH 107
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------------VRLMMNPQ 233
EVF+GGL +DV +DLR + ++GE+ E VRLM +
Sbjct: 108 LLSLPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKDRD 166
Query: 234 TKKNKGFAFLRFATVEQARQAVTELKNP------------VINGKQCGVTPSQDSDTLFL 281
+ +KG+AF+ F T + A++A+ EL + ++GK + S+ + LF+
Sbjct: 167 SGDSKGYAFVAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSLSETKNRLFI 226
Query: 282 GNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
GNI K WT++ ++ ++ G VE++ L++D N NRGFAF+ + ++A + R
Sbjct: 227 GNIPKNWTEDEFRKVIEDVG-PGVENIELIKDPTNTTRNRGFAFVLY--YNNACADYSRQ 283
Query: 342 QKRDVLFGVDRPA-KVSFADSFIDP-GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGE 399
+ D F ++ A V++AD P AQVK ++V +P + ++++EL + +GE
Sbjct: 284 KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGE 343
Query: 400 ITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457
+TKI P K ++DFGFV + +A+ K E+ N + L++P
Sbjct: 344 VTKIV----TPPGKGGKRDFGFVHYAERSSALKAVKDTERYEV----NGQPLEVVLAKPQ 395
Query: 458 QRGKGK----------------HASRGDFRS----GRGTGRATRGSWGLPSPRSLPGRSA 497
K H + G F + G G GS+ P + GR A
Sbjct: 396 AERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQP---MIYGRGA 452
Query: 498 RGIGSRLPPASVKRP-VPVRDRRPIMSMTARARPMPPPPPRSYDR 541
G ++ P + V ++P M M A PP PR DR
Sbjct: 453 MPTGMQMVPMLLPDGRVGYVLQQPGMPMAA----APPQRPRRNDR 493
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 139/258 (53%), Gaps = 15/258 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK-KNKGFAFLRFATVEQARQAVT 256
EVFVG + +D+ D+L +F + G + ++RLMM+P +N+G+AF+ F + A +AV
Sbjct: 165 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLLSGQNRGYAFITFCNKDAALEAVK 224
Query: 257 ELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSN 315
N I +GK GV S ++ LF+G+I K T+E++ E + + ++ L +
Sbjct: 225 LCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFSKV-TEGLMEVILYHQPD 283
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRGF FLE+ A A +RL V ++G P V +AD +P EIMA+VK
Sbjct: 284 DKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NPVTVEWADPVDEPDPEIMAKVK 341
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+FV L E+ + + +G++ +++ K KD+ FV F+ DAAV +
Sbjct: 342 VLFVRNLATPVTEELLEKTFSQFGKLERVK--------KLKDYAFVHFEDRDAAVKAMQE 393
Query: 435 INNAELGEGDNKAKVRAR 452
+N EL EG+ V A+
Sbjct: 394 MNCKEL-EGEEIEIVLAK 410
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 129/249 (51%), Gaps = 14/249 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+G + +D+ D+L +F + G V + RLMM+P T +N+G+AFL F + AR+ V
Sbjct: 169 EVFIGKIPRDMFEDELVPLFEKCGLVWDFRLMMDPMTGQNRGYAFLSFVELSAARKCVEM 228
Query: 258 LKNPVINGK-QCGVTPSQDSDTLFLGNICKTWTK-EALKEKLKH-YGVDNVEDLTLVEDS 314
I K + VT SQ ++ LF+G+I KT TK E L E KH G+ +V VE+
Sbjct: 229 YDRFEIRSKRELHVTISQPNNRLFVGSIPKTKTKQEILDEFSKHTTGLTDVILYYQVEEK 288
Query: 315 NN-EGM--NRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMA 371
N G+ NRGF FLE+ + A A +RL V + V +AD P D+IM
Sbjct: 289 NKGSGLQKNRGFCFLEYETHQAASQARRRLLSGRVKAWNNLIVTVDWADPINTPADDIMD 348
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431
+VK ++V L ED V + +GEI K++ K KD+ FV F D A +
Sbjct: 349 KVKVLYVKNLATCVSEDIVSQTFAAFGEIEKVK--------KLKDYAFVHFKNRDEARSA 400
Query: 432 AKSINNAEL 440
+N L
Sbjct: 401 MTELNGFNL 409
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 168 EVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 227
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 287 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 344
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 345 LYVRNLTQDVSEDKLKEHFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 396
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 397 NGKEIG----ASNIEVSLAKP 413
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 19/269 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + K++ D++ + Q GEV ++RLMM+P T +N+G+AF F ++E AR+AV +
Sbjct: 172 EIFVGKIPKEMYEDEIIPLLEQCGEVHDLRLMMDPLTGQNRGYAFAAFTSIEGAREAVKQ 231
Query: 258 LK-NPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY--GVDNVEDLTLVEDS 314
L + + + Q V S L++G+I K TK+ + E+ G+ +V ++ +
Sbjct: 232 LNGHKIKDNWQLSVNVSVPKSRLYVGSIPKNKTKDEILEEFAKVEKGLLDV----IIYKT 287
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRGFAFLEF S A A ++L + V +AD I+P + M++VK
Sbjct: 288 EDKMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWNQINVNVDWADPVIEPDSDTMSKVK 347
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
V++ L E +++E YGE+ K + K KD+ FV F DAAV +
Sbjct: 348 VVYIRNLSTETTEVKIKEDFGQYGEVEK--------AKKMKDYCFVHFKERDAAVKAIEE 399
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKGK 463
+N E EG + L++P K K
Sbjct: 400 MNGKEY-EG---TTIEVSLAKPPMENKKK 424
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 147/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F T E A++AV
Sbjct: 164 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKL 223
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TK+ + E+ + + D+ L ++
Sbjct: 224 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 283 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L ++ E+ + + +G++ +++ K KD+ F+ F+ D AV +
Sbjct: 341 LFVRNLASTVTEELLEKTFCQFGKLERVK--------KLKDYAFIHFEERDGAVKALAEL 392
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ +L EG+ V A+ P Q+ K + A R
Sbjct: 393 HGKDL-EGEPIEIVFAK--PPDQKRKERKAQR 421
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 158/279 (56%), Gaps = 22/279 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +D DDL ++ GE++EVRLM + +TK+NKGFAF+ F + A++A+ +
Sbjct: 110 EVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIED 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL--KHYGVDNVEDLTLVEDSN 315
L + G+ + SQ LF+GN+ K +++ L+ + K GV N+E + +D +
Sbjct: 170 LHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQGKGPGVVNIE---MFKDLH 226
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD---SFIDPGDEIMA 371
+ NRGF F+E+ + + A A ++L + F VD VS+A+ S A
Sbjct: 227 DPSRNRGFLFVEYYNHACADYAKQKLSAPN--FKVDGSQLTVSWAEPKGSSSSDSSSAAA 284
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAA 428
QVKT++V LP + +++++E+ + +GE+TK+ L P AK ++DFGFV F +A
Sbjct: 285 QVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVL----PPAKAGNKRDFGFVHFAERSSA 340
Query: 429 VTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ K++ +E E D + + +++PL K H+ +
Sbjct: 341 L---KAVKGSEKYEIDGQV-LEVSMAKPLGDKKPDHSFK 375
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 144/264 (54%), Gaps = 20/264 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F T + A+QAV +
Sbjct: 178 EVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQQAVQK 237
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKE---KLKHYGVDNVEDLTLVED 313
L N I GK + S + LF+GNI K+ KE + E KL Y VE + +
Sbjct: 238 LDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTGYTAGLVE-VIIYSS 296
Query: 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
+++ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++
Sbjct: 297 PDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSK 354
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
VK ++V L E++++E + YG++ +++ K KD+ F+ F+ + AV
Sbjct: 355 VKVLYVRNLTQEISEEKLKEAFEAYGKVERVK--------KIKDYAFIHFEDRENAVKAM 406
Query: 433 KSINNAELGEGDNKAKVRARLSRP 456
+ ++ E+G G N + L++P
Sbjct: 407 EELDGKEMG-GSN---IEVSLAKP 426
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 153/279 (54%), Gaps = 22/279 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +D DDL ++ GE++EVRLM + +TK+NKGFAF+ F + A+ A+ +
Sbjct: 110 EVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQHAIED 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL--KHYGVDNVEDLTLVEDSN 315
L + G+ + SQ LF+GN+ K +++ L+ + K GV N+E + +D +
Sbjct: 170 LHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQGKGPGVVNIE---MFKDLH 226
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD---SFIDPGDEIMA 371
+ NRGF F+E+ + + A A ++L + F VD VS+A+ S A
Sbjct: 227 DPSRNRGFLFVEYYNHACADYAKQKLSAPN--FKVDGSQLTVSWAEPKGSSSSDSSSAAA 284
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAA 428
QVKT++V LP + +++++E+ + +GE+TK+ L P AK ++DFGFV F +A
Sbjct: 285 QVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVL----PPAKAGNKRDFGFVHFAERSSA 340
Query: 429 VTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ K E+ + + +++PL K H+ +
Sbjct: 341 LKAVKGNEKYEI----DGQVLEVSMAKPLGDKKPDHSFK 375
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 158/279 (56%), Gaps = 22/279 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL +D DDL ++ GE++EVRLM + +TK+NKGFAF+ F + A++A+ +
Sbjct: 110 EVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIED 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL--KHYGVDNVEDLTLVEDSN 315
L + G+ + SQ LF+GN+ K +++ L+ + K GV N+E + +D +
Sbjct: 170 LHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQGKGPGVVNIE---MFKDLH 226
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD---SFIDPGDEIMA 371
+ NRGF F+E+ + + A A ++L + F VD VS+A+ S A
Sbjct: 227 DPSRNRGFLFVEYYNHACADYAKQKLSAPN--FKVDGSQLTVSWAEPKGSSSSDSSSAAA 284
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAA 428
QVKT++V LP + +++++E+ + +GE+TK+ L P AK ++DFGFV F +A
Sbjct: 285 QVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVL----PPAKAGNKRDFGFVHFAERSSA 340
Query: 429 VTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ K++ +E E D + + +++PL K H+ +
Sbjct: 341 L---KAVKGSEKYEIDGQV-LEVSMAKPLGDKKPDHSFK 375
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 148/288 (51%), Gaps = 11/288 (3%)
Query: 159 QGEEEVENAGEEAE-RPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVF 217
QG+E+V + + VD E H E+ E V++GG+ + +DLR
Sbjct: 55 QGQEQVLQLQHRIQMKRRRVDNENRRHAELLALPPHGSE--VYLGGIPNNASEEDLRGFC 112
Query: 218 SQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSD 277
VGEVTEVR++ + + KG+AF+ F T E A +A+ EL N I G++ + SQ
Sbjct: 113 EPVGEVTEVRILKGKDSAETKGYAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKH 172
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337
LF+ N+ +TW +E +K+ + G V + L +D N NRGFAF+E+ + + A
Sbjct: 173 RLFISNVPRTWEEEDMKKVVTEIG-PGVNLVDLWKDPQNSSRNRGFAFIEYYNHACA--E 229
Query: 338 FKRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
+ R + + F +D A VS+AD + +QVK V++ LP +D++REL
Sbjct: 230 YSRKKMSNPKFKLDNNASTVSWADP-KNVESSAASQVKAVYIKNLPKYMTQDQLRELFGQ 288
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444
+G+ITK+ + + FGFV F +A+ K++ N E E D
Sbjct: 289 HGKITKVVIPPAKAGQENCRFGFVHFAERSSAM---KALKNTEKYEID 333
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 164/333 (49%), Gaps = 43/333 (12%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 168 EVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 227
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 287 KKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 344
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 345 LYVRNLTQDVTEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 396
Query: 436 NNAELGE-----------GDNKAK---VRARLSRPLQRGKGKHASRGDFRSGRGTGRATR 481
N E+G D K K +RAR R +Q + + G+ T
Sbjct: 397 NGKEVGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGIVGNL-------SPTH 449
Query: 482 GSWGLPSPRSLPGRSARGIGSRLPPASVKRPVP 514
S +P LP G+R+PP ++ P+P
Sbjct: 450 PSMMSITPMRLP-------GARMPP--LRTPMP 473
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 133/245 (54%), Gaps = 13/245 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F T E A++AV
Sbjct: 164 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKL 223
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TK+ + E+ + + D+ L ++
Sbjct: 224 CNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDD 282
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FL + A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 283 KKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKV 340
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L ++ E+ + + +G++ +++ K KD+ F+ F+ D AV +
Sbjct: 341 LFVRNLASTVTEELLEKTFCQFGKLERVK--------KLKDYAFIHFEERDGAVKALAEL 392
Query: 436 NNAEL 440
+ +L
Sbjct: 393 HGKDL 397
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 199 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 258
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 259 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 317
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 318 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 375
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 376 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 427
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 428 NGKEIGA----SNIEVSLAKP 444
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F + A AV +
Sbjct: 168 EVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAAINAVRQ 227
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 287 KKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 344
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 345 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 396
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 397 NGKEIGASN----IEVSLAKP 413
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 325
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 326 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 383
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 384 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 435
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 436 NGKEIGA----SNIEVSLAKP 452
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 325
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 326 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 383
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 384 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 435
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 436 NGKEIGA----SNIEVSLAKP 452
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 203 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 262
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 263 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 321
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 322 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 379
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 380 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 431
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 432 NGKEIGASN----IEVSLAKP 448
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 283
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 284 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 341
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 342 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 393
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 394 NGKEIGA----SNIEVSLAKP 410
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 224 EVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 283
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 284 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 342
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 343 KKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 400
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 401 LYVRNLTQDVTEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 452
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 453 NGKEVGASN----IEVSLAKP 469
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 325
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 326 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 383
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 384 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 435
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 436 NGKEIGASN----IEVSLAKP 452
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 283
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 284 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 341
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 342 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 393
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 394 NGKEIGASN----IEVSLAKP 410
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 199 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 258
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 259 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 317
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 318 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 375
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 376 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 427
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 428 NGKEIGASN----IEVSLAKP 444
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 199 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 258
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 259 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 317
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 318 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 375
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 376 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 427
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 428 NGKEIGASN----IEVSLAKP 444
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 126 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 185
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 186 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 244
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 245 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 302
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 303 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 354
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 355 NGKEIGASN----IEVSLAKP 371
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 154/312 (49%), Gaps = 35/312 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G + ++RLMM+P T +N+G+AF+ F + E A+ AV E
Sbjct: 178 EVFCGKIPKDMYEDELIPLFEKCGSIWDLRLMMDPMTGQNRGYAFVTFTSKEAAQNAVRE 237
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N + GK V S + LF+GNI K+ KE + E+ + + + ++
Sbjct: 238 LDNHEMKPGKPLKVNISVPNLRLFVGNIPKSKGKEEIMEEFSKLAA-GLTKVIIYSSPDD 296
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P E M++VK
Sbjct: 297 KKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGCD--IIVDWADPQEEPDAETMSKVKV 354
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + YG+I +++ K KD+ F+ F+ D A+ +
Sbjct: 355 LYVRNLTQDCSEEKLKESFEVYGKIDRVK--------KIKDYAFIHFEDRDNAIKALNEL 406
Query: 436 NNAELGEG-----------DNKAK---VRARLSRPLQRGKGKHASR--------GDFRSG 473
N +L D K K +RAR R +Q +G+ S S
Sbjct: 407 NGKDLAGACIEVSLAKPPSDKKKKEEVLRARERRMMQMMQGRGGSSPSHPAMMGSPMASL 466
Query: 474 RGTGRATRGSWG 485
RG G RGS G
Sbjct: 467 RGPGAGPRGSAG 478
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 158/319 (49%), Gaps = 32/319 (10%)
Query: 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQA 254
K EVFVG L +D+ D+L V + G + E+RLMM+ N+GFAF+++ +AR A
Sbjct: 100 KGCEVFVGKLPRDLYEDELVPVLEKCGRIYELRLMMD-FNGNNRGFAFVKYCAASEARAA 158
Query: 255 VTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
+ +L N I G+ GV S D+ LF+G I KT KE + ++K + V D+ +
Sbjct: 159 LKDLNNFEIRKGRLLGVCKSVDNCRLFVGGIPKTKQKEEILIEMKKV-TEGVCDVIVYPS 217
Query: 314 SNNEGMNRGFAFLEFS-SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
+ ++ NRGFAF+E+ + AM K + R ++G P V +A+ ++ D+IMA
Sbjct: 218 AADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWG--HPIAVDWAEPEVEVDDDIMAT 275
Query: 373 VKTVFVDGLPASWDEDRVR---ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
VK ++V L + E+++ L G I +++ K +D+GFV F+T + A+
Sbjct: 276 VKILYVRNLMLNTTEEQLEAEFSALVPSGSIERVK--------KIRDYGFVHFNTRENAI 327
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSP 489
C K +N G+ + + + L++P+ R R R R P
Sbjct: 328 KCLKQLN----GKILDGSPMEVTLAKPVDR-------ETYVRYTRAANRVVETQ----EP 372
Query: 490 RSLPGRSARGIGSRLPPAS 508
++PG A R PAS
Sbjct: 373 LTIPGYVATTYDPRFDPAS 391
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 170 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 229
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 230 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 288
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 289 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 346
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 347 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 398
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 399 NGKEIGASN----IEVSLAKP 415
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 325
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 326 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 383
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 384 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 435
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 436 NGKEIGASN----IEVSLAKP 452
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 266
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 267 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 325
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 326 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 383
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 384 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 435
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 436 NGKEIGASN----IEVSLAKP 452
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 148/277 (53%), Gaps = 16/277 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F + A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFDKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRS 472
N EL EG+ V A+ P ++ K + A+R RS
Sbjct: 395 NGKEL-EGEEIEIVLAK--PPDKKRKERQAARQASRS 428
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 148/290 (51%), Gaps = 25/290 (8%)
Query: 151 EDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVG 210
+D + H E +VE+ E+ + E++ H EV++GG+
Sbjct: 96 DDAMQNHSSDEAKVEDEDEKRKHAELLSLPPHGS-------------EVYIGGIP-HASD 141
Query: 211 DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270
+DL+ + ++GEV EVR+M + +NKGF F+ F +VE A +A+ EL N GK+
Sbjct: 142 EDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKC 201
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ SQ LF+GN+ ++W E LK+ + G + ++++NN NRGFAF+++ +
Sbjct: 202 SKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPGD------MKNTNN---NRGFAFIDYYN 252
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
+ A + +++ G + P VS+AD + +QVK V+V LP + ++++
Sbjct: 253 HACAEYSRQKMMSPTFKLGENAPT-VSWADP-KNAESSAASQVKAVYVKNLPKNVTQEQL 310
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
++L + +G+ITK+ L ++ GFV F A+ K+ EL
Sbjct: 311 KKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYEL 360
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 103/336 (30%), Positives = 169/336 (50%), Gaps = 40/336 (11%)
Query: 154 PEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE--------------FEV 199
P+ H E V A EA +V E + M QE +RK E+
Sbjct: 28 PQHHCTVPEGVAGAPNEAA---LVSLMERSGYGMVQENGQRKYGPPPGWQGTSPPRGCEI 84
Query: 200 FVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259
FVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV EL
Sbjct: 85 FVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTQKHEAKRAVRELN 143
Query: 260 NPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG 318
N I G+ GV S D+ LF+G I KT +E + E++ + V D+ + + ++
Sbjct: 144 NFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAADKM 202
Query: 319 MNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK ++
Sbjct: 203 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILY 260
Query: 378 VDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
V L E+ +R+ + G + +++ K +D+ FV F + D AV ++
Sbjct: 261 VRNLMIETSEEILRQTFGQFNPGCVERVK--------KIRDYAFVHFASRDDAVVAMDNL 312
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N E+ EG +++ L++P+ Q + + AS+G
Sbjct: 313 NGTEI-EG---SRIEVTLAKPVDKEQYTRYQKASKG 344
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMNEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F + + A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMNEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTA-GLYEVIIYSSPDD 283
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 284 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 341
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 342 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 393
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 394 NGKEIGASN----IEVSLAKP 410
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 225 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 283
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 284 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 341
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 342 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 393
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 394 NGKEIGASN----IEVSLAKP 410
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 170 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 229
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 230 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTA-GLYEVIIYSSPDD 288
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 289 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 346
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 347 LYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 398
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 399 NGKEIGASN----IEVSLAKP 415
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 149/287 (51%), Gaps = 20/287 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF G + E+RLMM+ KN+G+AF+ F A+ AV +
Sbjct: 113 EVFVGKIPRDVFEDELVPVFETAGRIYEMRLMMD-FDGKNRGYAFVMFTAKSDAKGAVKK 171
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I KT K+ + ++ + V D+ + +++
Sbjct: 172 LNNYEIRKGRMLGVCYSVDNCRLFVGGIPKTKKKDDIFAEMTKV-TEGVTDVIVYPSASD 230
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G P V +A+ D DEIM QVK
Sbjct: 231 KTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWG--HPIAVDWAEPEQDVDDEIMGQVKV 288
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L ED ++ + + G + +++ K +D+ FV F T +A + +
Sbjct: 289 LYVRNLMLDTTEDTLQNVFSQFKPGSVERVK--------KIRDYAFVHFSTREACIEAME 340
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRAT 480
IN + ++A+V L++P+ + ++ + GT +T
Sbjct: 341 KINGTHI----DQAEVEVTLAKPVDKSDYNRMAKVGAKVLNGTETST 383
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F + A AV +
Sbjct: 168 EVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAAVNAVRQ 227
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKL-TAGLYEVIIYSSPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 287 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 344
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 345 LYVRNLTQDVTEEKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 396
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N E+G + + L++P
Sbjct: 397 NGKEIGASN----IEVSLAKP 413
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 140/246 (56%), Gaps = 13/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV++GG+ D +DL+++ VGEV EVR+M P +++KG+AF+ F T + A +A+ +
Sbjct: 183 EVYLGGISNDATSEDLKELCEPVGEVVEVRIM--PGKRESKGYAFITFKTKDLALKAIEK 240
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N GK+ V+ SQ + LF+GN+ +W+ + LK+ ++ G V + L++D +
Sbjct: 241 LSNKTFKGKKIRVSSSQAKNKLFVGNVPNSWSHDDLKKAVEEVG-PGVLKIDLIKDPRTD 299
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI-MAQVKTV 376
NRG+ F+E+ + + A + +++ + + P VS+AD GD +QVK+V
Sbjct: 300 -RNRGYGFVEYYNNACAEYSRQKMSTPNFKLDTNAPT-VSWADP--KNGDSASTSQVKSV 355
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAKS 434
+V LP + + ++++L +++GEITKI L PS D +GFV F A+ K+
Sbjct: 356 YVKNLPKNVTQGQLKKLFEHHGEITKIVLP---PSKDGHDNRYGFVHFKDRHMAMKALKN 412
Query: 435 INNAEL 440
EL
Sbjct: 413 TEKYEL 418
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 293
Query: 436 N 436
N
Sbjct: 294 N 294
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 293
Query: 436 N 436
N
Sbjct: 294 N 294
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 155/296 (52%), Gaps = 27/296 (9%)
Query: 175 EMVDA-----EEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLM 229
+MVDA E+ H E+ E V+VGG+ DV DDLRK+ +GEV EVR+
Sbjct: 72 KMVDADRDEDEKESHAELLSLPPHGSE--VYVGGISSDVSSDDLRKLCESIGEVVEVRM- 128
Query: 230 MNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWT 289
K K +AF+ F T E A +A+ +L N + GK+ V+ SQ + LF+GNI WT
Sbjct: 129 ---PGKSGKLYAFVNFRTKELAVKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYKWT 185
Query: 290 KEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
++ KE ++ G V + LV+ ++ N+G+ F+E+ +++ A A K++ + F
Sbjct: 186 EDIFKEAVEEVG-PGVVKVNLVKAPRSD-TNKGYGFIEYYNQACAEYAKKKMSTPE--FK 241
Query: 350 VDRPA-KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN 408
+D+ A VS+AD+ +QVK++++ LP + +++++ L ++ GE+TK+ +
Sbjct: 242 LDKNAPNVSWADTKNGGESASTSQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVVI--- 298
Query: 409 MPSAK---RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGK 461
P AK +GFV F A+ K EL + + L++PL K
Sbjct: 299 -PPAKAGHENRYGFVHFKERSMAMKALKDTERYEL----DGHLLDCSLAKPLAEKK 349
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 148/270 (54%), Gaps = 18/270 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + + RLMM P T N+G+AF+ F T + A++AV +
Sbjct: 174 EVFAGKIPKDMFEDELVPLFENCGPIWDFRLMMEPLTGLNRGYAFVTFTTRDAAQEAVKQ 233
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I ++ V S + LF+GNI K+ T+E + E+ +++ D+ + +++
Sbjct: 234 LDNYEIKPTRRLKVNVSVANVRLFVGNIPKSKTREEIIEEFSKL-TESLTDVIVYNVADD 292
Query: 317 -EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
+ NRGFAFLE+ S A A ++L R ++ D V +AD +P +E M++VK
Sbjct: 293 AKKKNRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCD--IIVDWADPQEEPDEETMSKVK 350
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
++V L ED++RE + +G++ +++ K KD+GFV F+ + A+ K
Sbjct: 351 VLYVRNLKQDVTEDQIREKFEVFGKVERVK--------KIKDYGFVHFEEREHALAAMKD 402
Query: 435 IN-NAELGEGDNKAKVRARLSRPLQRGKGK 463
+N ELGEG + + L++P K K
Sbjct: 403 LNGKQELGEG---SVMEISLAKPPTENKKK 429
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 149 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 208
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 209 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 267
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 268 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 325
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 326 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 377
Query: 436 N 436
N
Sbjct: 378 N 378
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 137/261 (52%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + +DV D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV +
Sbjct: 176 EVFCGKIPRDVYEDELIPLFEKCGTIWDLRLMMDPLTNLNRGYAFVTFTTTEAAQEAVNQ 235
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L + + G+ + S + LF+GNI K+ + E+ + ++ + ++
Sbjct: 236 LNDLEMKGGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEEFSKV-TAGLAEVIIYSSPDD 294
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NRGF FLE+ S A A +RL R +FG D V +AD +P ++ M++VK
Sbjct: 295 RRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCD--IIVDWADPQEEPDNDTMSRVKV 352
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L + E++++E + +G I +++ K KD+ FV F+ D AV ++
Sbjct: 353 LYVRNLTQEFTEEKLKEAFEAHGPIQRVK--------KIKDYAFVHFEERDDAVQAMDAL 404
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N L A + L++P
Sbjct: 405 NGHTL----YGANLEVSLAKP 421
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 293
Query: 436 N 436
N
Sbjct: 294 N 294
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F + + A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMNEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 162/321 (50%), Gaps = 37/321 (11%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE--------------FEVFVG 202
H E V A EA +V E + M QE +RK E+FVG
Sbjct: 32 HINIPEGVAGASNEAA---LVTLMERTGYTMVQENGQRKYGPPPGWNGPSPPRGCEIFVG 88
Query: 203 GLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN-P 261
+ +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV EL N
Sbjct: 89 KIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTEKHEAKRAVRELNNYE 147
Query: 262 VINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
V G+ GV S D+ LF+G I KT +E + E++ + V D+ + + ++ NR
Sbjct: 148 VRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAADKMKNR 206
Query: 322 GFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDG 380
GFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK ++V
Sbjct: 207 GFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRN 264
Query: 381 LPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438
L +E+ +R++ + G + +++ K +D+ FV F + D AV ++N
Sbjct: 265 LMMETNEETIRQIFSQWNPGCVERVK--------KIRDYAFVHFTSRDDAVLAMDNLNGT 316
Query: 439 ELGEGDNKAKVRARLSRPLQR 459
E+ EG + + L++P+ +
Sbjct: 317 EI-EG---SCIEVTLAKPVDK 333
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 140 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 199
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 200 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 258
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 259 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 316
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 317 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 368
Query: 436 N 436
N
Sbjct: 369 N 369
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/441 (29%), Positives = 201/441 (45%), Gaps = 85/441 (19%)
Query: 156 EHGQGE--EEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE--------------FEV 199
HGQ E V A EA +V E + M QE +RK E+
Sbjct: 31 HHGQLNIPEGVAGAPNEAA---LVALMERTGYSMVQENGQRKYGPPPGWNAPSPPRGCEI 87
Query: 200 FVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259
FVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV EL
Sbjct: 88 FVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTEKHEAKRAVRELN 146
Query: 260 N-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG 318
N V G+ GV S D+ LF+G I KT +E + E++ + V D+ + + ++
Sbjct: 147 NYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAADKM 205
Query: 319 MNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK ++
Sbjct: 206 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILY 263
Query: 378 VDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
V L E+ +R++ + G + +++ K +D+ FV F + D AV ++
Sbjct: 264 VRNLMMETSEEAIRQIFSQFNPGCVERVK--------KIRDYAFVHFTSRDDAVLAMDNL 315
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKG--KHASRGD------------------------ 469
N E+ EG + + L++P+ + + + AS+G
Sbjct: 316 NGTEV-EG---SCIEVTLAKPVDKEQYSRQKASKGGASATSEPTQQNYVYQCDPYTLAYY 371
Query: 470 --------------FRSG--RGTGRATRGSWGLPSPRS--LPGRSA-RGIGSRLPPASVK 510
F G RG GRAT G+ P PR L G SA RGI SR +
Sbjct: 372 GYPYNTLIGPNREYFVKGTVRGRGRATTGNR-TPGPRGSYLGGYSAGRGIYSRYHEGKTR 430
Query: 511 RPVPVRDRRPIMSMTARARPM 531
+P + P + + A P+
Sbjct: 431 QPEKSYELMPSLELAASVNPV 451
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 161/321 (50%), Gaps = 35/321 (10%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE--------------FEVFVG 202
HGQ AG E P +V E + M QE +RK E+FVG
Sbjct: 37 HGQVSVTEGVAGAPNE-PALVALMERTGYNMVQENGQRKYGPPPGWNGPSPQRGCEIFVG 95
Query: 203 GLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN-P 261
+ +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV EL N
Sbjct: 96 KIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTEKHEAKRAVRELNNYE 154
Query: 262 VINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
V G+ GV S D+ LF+G I KT +E + E++ + V D+ + + ++ NR
Sbjct: 155 VRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVIDVIVYASAADKMKNR 213
Query: 322 GFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDG 380
GFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK ++V
Sbjct: 214 GFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRN 271
Query: 381 LPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438
L E+ +R++ + G + +++ K +D+ FV F++ D AV +N
Sbjct: 272 LMMETSEETIRKVFSQWNPGCVERVK--------KIRDYAFVHFNSRDDAVLAMNQLNGT 323
Query: 439 ELGEGDNKAKVRARLSRPLQR 459
E+ EG + L++P+ +
Sbjct: 324 EV-EGSC---IEVTLAKPVDK 340
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 133/243 (54%), Gaps = 14/243 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL-KHYGV-DNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ K G+ + + D+ L
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 184
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 185 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 242
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 243 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 294
Query: 434 SIN 436
+N
Sbjct: 295 EMN 297
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 143/263 (54%), Gaps = 21/263 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P T N+G+AF+ F + + A AV E
Sbjct: 131 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAASNAVRE 190
Query: 258 LKNPVINGKQC-GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYG--VDNVEDLTLVEDS 314
L N I +C + S + LF+GNI K+ KE E L +G + ++ +
Sbjct: 191 LDNYEIKSGKCLKINVSVPNLRLFVGNIPKSKGKE---EILDEFGKLTAGLMEVIIYSSP 247
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V
Sbjct: 248 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKV 305
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K ++V L E++++E + +G++ +++ K KD+ F+ F+ D AV K
Sbjct: 306 KVLYVRNLTQDTSEEKLKESFEQFGKVERVK--------KIKDYAFIHFEDRDHAVNAMK 357
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
++ +LG G N + L++P
Sbjct: 358 ELDGKDLG-GSN---LEVSLAKP 376
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 20/266 (7%)
Query: 211 DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270
+DLR++ +GE+ EVRLM + +TK+NKGFAF+ F + A+ A+ EL + G+
Sbjct: 26 EDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTLRC 85
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ SQ LF+GN+ K ++E L +K G V ++ + +D +N NRGF F+E+ +
Sbjct: 86 SLSQAKHRLFVGNVPKGLSEEELTSIIKGKG-PGVVNIEMFKDLHNPSRNRGFLFVEYYN 144
Query: 331 RSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD-----SFIDPGDEIMAQVKTVFVDGLPAS 384
+ A A ++L D F VD VS+A+ S AQVKT++V LP +
Sbjct: 145 HACADYARQKLSSPD--FKVDGSQLTVSWAEPKGSSSSSSDSSSPAAQVKTIYVKNLPEN 202
Query: 385 WDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVTCAKSINNAELG 441
+++V++L + +GE+TKI L P AK ++DFGFV F +A+ K++ +E
Sbjct: 203 VSKEKVKDLFEVHGEVTKIVL----PPAKAGHKRDFGFVHFAERSSAL---KAVKGSEKY 255
Query: 442 EGDNKAKVRARLSRPLQRGKGKHASR 467
E D + + +++PL K H+ +
Sbjct: 256 EIDGQV-LEVSMAKPLSDKKPDHSFK 280
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 133/243 (54%), Gaps = 17/243 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F + + A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYG--VDNVEDLTLVEDS 314
N I GK GV S ++ LF+G+I K TKE + L+ +G + + D+ L
Sbjct: 226 CDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENI---LEEFGKVTEGLVDVILYHQP 282
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 283 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 340
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMN 392
Query: 434 SIN 436
+N
Sbjct: 393 EMN 395
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 133/243 (54%), Gaps = 14/243 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 143 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 202
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL-KHYGV-DNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ K G+ + + D+ L
Sbjct: 203 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 262
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 263 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 320
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 321 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 372
Query: 434 SIN 436
+N
Sbjct: 373 EMN 375
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 135 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 194
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 195 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 253
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 254 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 311
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 312 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 363
Query: 436 N 436
N
Sbjct: 364 N 364
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 144 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 203
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 204 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 262
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 263 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 320
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 321 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 372
Query: 436 N 436
N
Sbjct: 373 N 373
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 125 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 183
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 184 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 241
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 293
Query: 436 N 436
N
Sbjct: 294 N 294
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 141/263 (53%), Gaps = 21/263 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F E A AV +
Sbjct: 235 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 294
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYG--VDNVEDLTLVEDS 314
L N I GK + S + LF+GNI K+ K+ E L+ +G + ++ +
Sbjct: 295 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKD---EILEEFGKLTAGLYEVIIYSSP 351
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++V
Sbjct: 352 DDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKV 409
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K ++V L ED+++E + YG++ +++ K KD+ F+ F+ D+AV +
Sbjct: 410 KVLYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMR 461
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
+N E+G + + L++P
Sbjct: 462 GLNGKEIGASN----IEVSLAKP 480
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 133/243 (54%), Gaps = 14/243 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL-KHYGV-DNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ K G+ + + D+ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 285
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 286 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 343
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 344 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 395
Query: 434 SIN 436
+N
Sbjct: 396 EMN 398
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 137/247 (55%), Gaps = 14/247 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + KD+ D+L +F + G++ ++RLMM+P T N+G+AF+ F + A++AV
Sbjct: 174 EVFVGKIPKDMFEDELIPLFEKCGKIYDLRLMMDPLTGLNRGYAFITFCEKQGAQEAVNM 233
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTK-EALKEKLKHYGVDNVEDLTLVEDSN 315
N I GK GVT S ++ LF+GNI K + E L+E KH + D+ + +
Sbjct: 234 FDNHEIRKGKHIGVTISINNHRLFVGNIPKNRGRDELLEEFTKH--APGLTDVIIYTSPD 291
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRGF FLE+ S A A +RL R ++G D V +AD +P E M++VK
Sbjct: 292 DKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCD--IIVDWADPQEEPDSETMSKVK 349
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
++V L E++++E+ + +G ++E + K +D+ FV F+ + A+ +
Sbjct: 350 VLYVRNLTQEVTEEKLKEVFEEFG--GRVERVK-----KIRDYAFVHFEDREDALRALEK 402
Query: 435 INNAELG 441
NN E G
Sbjct: 403 NNNREAG 409
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 135/244 (55%), Gaps = 10/244 (4%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
+VFV + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ + T E A+ AV +
Sbjct: 155 QVFVSKIPRDMFEDELIPLFEKPGPIFDLRLMMDPLSGQNRGYAFVTYTTKESAQDAVKQ 214
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S ++ LF+G+I K +K+ + ++ + ++D+ + +
Sbjct: 215 LDNYEIRKGRWLGVCISVANNRLFVGSIPKNKSKQEIFDEFGKV-TNGLKDVIIYYMPED 273
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGFAFLE+ S +A A +RL + + V +AD +P DE+M++VK +
Sbjct: 274 KRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNITVTVDWADPIEEPDDEVMSKVKVL 333
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+V L E+ ++ + YG + +++ K KD+ FV F+ + A+ + +N
Sbjct: 334 YVRNLAVEAAEEIIQAKFEPYGTVERVK--------KIKDYAFVHFENREDAIKAMEDLN 385
Query: 437 NAEL 440
EL
Sbjct: 386 GKEL 389
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 133/243 (54%), Gaps = 14/243 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL-KHYGV-DNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ K G+ + + D+ L
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 285
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 286 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 343
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 344 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 395
Query: 434 SIN 436
+N
Sbjct: 396 EMN 398
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 138 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 197
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 198 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 256
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 257 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 314
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 315 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 366
Query: 436 N 436
N
Sbjct: 367 N 367
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 13/243 (5%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+ +VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 109 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 168
Query: 256 TELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L
Sbjct: 169 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQP 227
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 228 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 285
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 286 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 337
Query: 434 SIN 436
+N
Sbjct: 338 EMN 340
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 13/243 (5%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+ +VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 25 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 84
Query: 256 TELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L
Sbjct: 85 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQP 143
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 144 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 201
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 202 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 253
Query: 434 SIN 436
+N
Sbjct: 254 EMN 256
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 12/246 (4%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F + + A +AV
Sbjct: 168 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFINFCSKDAAAEAVKL 227
Query: 258 LKNPVING-KQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I K GV S ++ LF+G+I K T+E++ + + ++++ L ++
Sbjct: 228 CDNYEIRSRKHLGVCISVANNRLFVGSIPKNKTRESILDDFSKV-TEGLQEVILYHQPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMA-QVKT 375
+ NRGF FLE+ A A + L V+ + P V +A+ + ++MA Q K
Sbjct: 287 KETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGN-PVTVEWANPVTERDTDVMANQAKV 345
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ + + +G++ ++ K KD+ FV F+ DAAV +
Sbjct: 346 LFVRKLATSVTEELLVKTFSAFGKLERV--------YKLKDYAFVHFEDRDAAVKAMVDM 397
Query: 436 NNAELG 441
N ELG
Sbjct: 398 NGKELG 403
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 163/362 (45%), Gaps = 88/362 (24%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P + N+G+AF+ F E A+QAV E
Sbjct: 161 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQQAVRE 220
Query: 258 LKNPVIN------------------------------------------------GKQCG 269
L N I GK+ G
Sbjct: 221 LDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTGKLNDYEIRKGKKIG 280
Query: 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
VT S ++ LF+GNI K ++ L E+ + + ++ + +++ NRGF FLE+
Sbjct: 281 VTVSYNNHRLFVGNIPKNRDRDDLFEEFTKH-APGLTEVIIYSSPDDKKKNRGFCFLEYE 339
Query: 330 SRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDED 388
S A A +RL R ++G D V +AD +P ++ M++V+ ++V L E+
Sbjct: 340 SHKAASLAKRRLSTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEE 397
Query: 389 RVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG------- 441
+++E + YG+I +++ K KD+ F+ F+ D AV +N E+G
Sbjct: 398 KLKESFEQYGKIERVK--------KIKDYAFIHFEDRDNAVKAMNELNGKEMGGSHIEVS 449
Query: 442 ----EGDNKAK---VRARLSRPLQRGKGK------HAS--------RGDFRSGRGTGRAT 480
D K K +RAR R +Q +G+ H S RG + RGTG
Sbjct: 450 LAKPPSDKKKKEEMLRARERRMMQMLQGRGGGSPSHPSMMGGPMPVRGPAQGPRGTGAGM 509
Query: 481 RG 482
RG
Sbjct: 510 RG 511
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F + A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 163/333 (48%), Gaps = 44/333 (13%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P T N+G+AF+ F + A AV +
Sbjct: 168 EVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAAVNAVRQ 227
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK + S + LF+GNI K+ K+ + E+ + ++ + ++
Sbjct: 228 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTA-GLYEVIIYSSPDD 286
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++G D V +AD +P ++ M++VK
Sbjct: 287 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKV 344
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + YG++ +++ K KD+ F+ F+ D+AV + +
Sbjct: 345 LYVRNLTQDVTEEKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGL 396
Query: 436 NNAELGE-----------GDNKAK---VRARLSRPLQRGKGKHASRGDFRSGRGTGRATR 481
N E+G D K K +RAR R +Q + + G+ T
Sbjct: 397 NGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGLVGNLSP-------TH 449
Query: 482 GSWGLPSPRSLPGRSARGIGSRLPPASVKRPVP 514
S +P LP G+R+P ++ P+P
Sbjct: 450 PSMMSLTPMRLP-------GARMP---LRTPIP 472
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 145/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 84 EIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTEKHEAKRAVRE 142
Query: 258 LKN-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N V G+ GV S D+ LF+G I KT +E + E++ + V D+ + + +
Sbjct: 143 LNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKV-TEGVIDVIVYASAAD 201
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 202 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 259
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ +R++ + G + +++ K +D+ FV F++ D AV
Sbjct: 260 LYVRNLMMETSEETIRKVFSQWNPGCVERVK--------KIRDYAFVHFNSRDDAVLAMN 311
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
+N E+ EG + + L++P+ +
Sbjct: 312 HLNGTEV-EG---SCIEVTLAKPVDK 333
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 168/334 (50%), Gaps = 36/334 (10%)
Query: 159 QGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE---------------FEVFVGG 203
QG + + A EA ++ E + + QE +RK EVFVG
Sbjct: 9 QGPQGITGAQNEAA---LLSLMERTGYNIIQENGQRKYGGPPPGWEGVTPSRGCEVFVGK 65
Query: 204 LDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263
+ +D+ D+L VF +G++ E+RLMM+ N+G+AF+ + + + A++AV +L N I
Sbjct: 66 IPRDLFEDELVPVFESIGKIYELRLMMD-FNGNNRGYAFVMYTSRDDAKRAVKQLNNYEI 124
Query: 264 -NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG 322
G+ GV PS D+ LF+G I K K + E++ + V D+ + + ++ NRG
Sbjct: 125 RKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKV-TEGVVDVIVYPSATDKTKNRG 183
Query: 323 FAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
FAF+E+ S R+ AM K + R L+G V +A+ ++ ++IM VK ++V L
Sbjct: 184 FAFVEYESHRAAAMARRKLIPGRIQLWG--HQIAVDWAEPEVEVDEDIMKSVKVLYVRNL 241
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ E+ ++E +N +E + K +D+ FV F T + AV A + N +L
Sbjct: 242 LLTTTEESLKESFENVVSPGSVERVK-----KIRDYAFVHFKTREEAVK-AMNATNGQLI 295
Query: 442 EGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
+G +V L++P+ R +RG +GRG
Sbjct: 296 DG---CQVEVTLAKPVDRDNYVRYTRG---AGRG 323
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 16/289 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
+VFVG + + V D+L + + G V + RLMM+P + +N+G+ F+ + E A + V
Sbjct: 163 QVFVGRIPRFVFEDELVPLLEEAGVVWDFRLMMDPMSGQNRGYGFVTYTNKEAATECVKM 222
Query: 258 LKNPVINGKQ-CGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I K+ GV SQ + LF+G+I KT TK+ + E+ ++D+ + + +
Sbjct: 223 LDNYEIRPKKFLGVCVSQSNCRLFVGSIPKTKTKDEIFEEFDGI-TQGLKDVIIYLQTED 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE++ A A +RL V + V +AD +P DEIM++VK +
Sbjct: 282 KMKNRGFCFLEYTDHKAASQARRRLSSVKVK-AFNNTVSVDWADPVEEPSDEIMSKVKVL 340
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
++ L E+ V YGE+ +++ K KD+ FV F D A+ + +N
Sbjct: 341 YIKNLSMKATEEIVMATFSAYGEVERVK--------KIKDYAFVHFKERDNAMKALEELN 392
Query: 437 NAELGEGDNKAKVRARLSRPL-QRGKGKHASRGDFRSGRGTGRATRGSW 484
L EG+ + L++P+ ++ K + R G G R +
Sbjct: 393 GLNL-EGE---AIEISLAKPVDKKKKERQMERKMMTHAYGMGYGNRAGY 437
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 143/264 (54%), Gaps = 15/264 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG L +D D+L VF +VG + E+RLMM+ +N+G+ F+ + + A++AV
Sbjct: 89 EVFVGKLPRDCYEDELVPVFEKVGTIYELRLMMD-YNGQNRGYGFVIYLSSRDAQRAVRT 147
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I + GV S D+ LF+G I K K+ + E++ D+V ++ + + +
Sbjct: 148 LNNYEIRKSRLIGVCHSVDNCRLFIGGIPKKVKKDEILEEISKV-TDSVVNVIVYPSATD 206
Query: 317 EGMNRGFAFLEFSS-RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E++ RS AM K + + L+G P V +A+ D ++IM QVK
Sbjct: 207 KSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWG--HPIAVDWAEPEQDIDEDIMDQVKV 264
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+++ L + E+ + L K + E+ +++ K KD+ FV F T + A +S+
Sbjct: 265 LYIRNLQLNTTEETIENLFKKFAEVERVK--------KIKDYCFVHFVTREGARLALESV 316
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
A GE + AK+ L++P+ +
Sbjct: 317 -KANNGESIDGAKIEVTLAKPVDK 339
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 147/264 (55%), Gaps = 20/264 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV DDL+K+ VGEV EVR+ K + +AF+ F T E A +A+ +
Sbjct: 97 EVYVGGIASDVSSDDLKKLCESVGEVVEVRM----PGKSGRLYAFVNFRTKELASKAIQK 152
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N + GK+ V+ SQ + LF+GNI WT+ K+ + G V + LV+ +++
Sbjct: 153 LNNKDLKGKKIRVSSSQAKNRLFIGNIPYNWTENEFKKAAEEVG-PGVLKVNLVKAPHSD 211
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKTV 376
N+G+ F+E+ +++ A A K + + F +D+ A VS+AD+ AQVK++
Sbjct: 212 -TNKGYGFIEYYNQACAEYAKKMMSTPE--FKLDKNAPNVSWADTKNGGESASTAQVKSL 268
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVTCAK 433
+V LP + ++++++L ++ GE+TK+ + P AK +GFV F A+ K
Sbjct: 269 YVKNLPKAVTQEQLKKLFEHLGEVTKVVI----PPAKAGHENRYGFVHFKERSMAM---K 321
Query: 434 SINNAELGEGDNKAKVRARLSRPL 457
++ + E E D + + L++PL
Sbjct: 322 ALEDTERFELDGQL-LDCSLAKPL 344
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F + A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 14/245 (5%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+ +VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 25 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 84
Query: 256 TELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL-KHYGV-DNVEDLTLVE 312
+ I GK GV S ++ LF+G+I K TKE + E+ K G+ + + D+ L
Sbjct: 85 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYH 144
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMA 371
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA
Sbjct: 145 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMA 202
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431
+VK +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 203 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKA 254
Query: 432 AKSIN 436
+N
Sbjct: 255 MDEMN 259
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 146/268 (54%), Gaps = 17/268 (6%)
Query: 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQ 253
+K E+F+G + +D D+L + + G V E+RLMM+ N+G+AF+ + + A++
Sbjct: 29 KKGCEIFIGKIPRDCFEDELVPIVEKAGPVYEMRLMMDHSGSMNRGYAFVVYCKAQDAKK 88
Query: 254 AVTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+V L I G+ GV S D+ LF+G I K TKE ++E+++ D V D+ +
Sbjct: 89 SVKLLNEYEIRKGRTIGVCMSVDNCRLFVGGIPKCLTKENIREEMEKV-TDGVADIIMYP 147
Query: 313 DSNNEGMNRGFAFLEFSS-RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMA 371
++++ NRGFAF+E++S R+ AM K + R L+ + V +A+ ++ +E MA
Sbjct: 148 AASDKSKNRGFAFVEYASHRAAAMARRKLINSRVRLW--NHVVAVDWAEPELEVDEETMA 205
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431
VK ++V L + E ++ + ++ + +++ K +D+ FV F++ A+T
Sbjct: 206 TVKILYVRNLMLTTTEAQLNKAFSHHAPVERVK--------KIRDYAFVHFNSRSGALTA 257
Query: 432 AKSINNAELGEGDNKAKVRARLSRPLQR 459
K++N + L + A + L++P+ +
Sbjct: 258 MKAMNGSVLDD----AVIEVTLAKPVDK 281
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 134/245 (54%), Gaps = 14/245 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + ++RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 71 EVFVGKIPRDVYEDELVPVFESVGRIYQMRLMMD-FDGKNRGYAFVMYTHKREAKRAVRE 129
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K ++ + E++ + V D+ + + +
Sbjct: 130 LDNHEIRPGRPLGVCCSVDNCRLFIGGIPKMKKRDEILEEISKV-TEGVLDVIVYASATD 188
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G + V +A+ +D +++M VK
Sbjct: 189 KTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWG--QQIAVDWAEPEMDVDEDVMETVKI 246
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ +R+ +G + +++ K +D+ FV F + + A+ S+
Sbjct: 247 LYVRNLMIKTSEETIRKTFSQFGCVERVK--------KIRDYAFVHFTSREDAIRAMNSL 298
Query: 436 NNAEL 440
N EL
Sbjct: 299 NGTEL 303
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 134/247 (54%), Gaps = 13/247 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+ GG+ D+ +DL+K+ VGEV EVR+M ++G+AF+ F T + A +AV E
Sbjct: 120 EVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKG--KDDSRGYAFVTFRTKDLALEAVRE 177
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNN 316
L N + GK+ V+ SQ + LF+GN+ +WT++ ++ ++ G ++ DL V +N
Sbjct: 178 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVGPGVLKADLMKVSSTNR 237
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
NRG+ F+E+ + + A A +++ + P VS+AD + +QVK+V
Sbjct: 238 ---NRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPT-VSWADP-KNNDSASTSQVKSV 292
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAKS 434
+V LP + + +++ L + +GEITK+ L PS D +GFV F A+ ++
Sbjct: 293 YVKNLPKNVTQAQLKNLFERHGEITKVVLP---PSRGGHDNRYGFVHFKDRSMAMRALQN 349
Query: 435 INNAELG 441
EL
Sbjct: 350 TERYELA 356
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 151/265 (56%), Gaps = 19/265 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+G + +D+ D+L VF ++G + EVRLMM+ + N+G+AF+ + + ARQ + +
Sbjct: 48 EVFIGKIPRDLFEDELVPVFEKIGPIYEVRLMMD-FSGNNRGYAFVVYQSKSAARQCIKQ 106
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I KT +E ++ ++ ++V D+ + +++
Sbjct: 107 LNNYEIRQGRMIGVCSSVDNCRLFIGGIPKTIKREEIRSEMAKI-TEHVVDVIVYPSASD 165
Query: 317 EGMNRGFAFLEFSS-RSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVK 374
+ NRGFAF+E+++ R+ AM K + +V L+G V +A+ I+ +EIM QVK
Sbjct: 166 KTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWG--HKIAVDWAEPEIEVDEEIMDQVK 223
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
V+V L S E+ +RE+ ++ + +++ K +D+ F+ F + + A A +
Sbjct: 224 IVYVRNLLLSTTEESLREIFQSIARVERVK--------KIRDYAFIHFTSKEDA-HMAIT 274
Query: 435 INNAELGEGDNKAKVRARLSRPLQR 459
+ N ++ +G + V L++P+ R
Sbjct: 275 LKNGQIIDG---STVEVTLAKPVDR 296
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 13/243 (5%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+ +VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 126 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 185
Query: 256 TELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L
Sbjct: 186 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQP 244
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 245 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 302
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 303 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 354
Query: 434 SIN 436
+N
Sbjct: 355 EMN 357
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 13/243 (5%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+ +VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 126 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 185
Query: 256 TELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L
Sbjct: 186 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQP 244
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 245 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 302
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 303 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 354
Query: 434 SIN 436
+N
Sbjct: 355 EMN 357
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 13/243 (5%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+ +VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 126 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 185
Query: 256 TELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L
Sbjct: 186 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQP 244
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 245 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 302
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 303 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 354
Query: 434 SIN 436
+N
Sbjct: 355 EMN 357
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 13/243 (5%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+ +VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 126 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 185
Query: 256 TELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L
Sbjct: 186 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQP 244
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 245 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 302
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 303 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 354
Query: 434 SIN 436
+N
Sbjct: 355 EMN 357
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 154/283 (54%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ + N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FSGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F+ + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFNNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N L + + + L++P+ + +RG GRGT
Sbjct: 285 ALNGKVL----DGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 151/280 (53%), Gaps = 19/280 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + D AV S+
Sbjct: 248 LYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSRDDAVHAMNSL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRGDFRS 472
N EL EG + + L++P+ Q + + A++G+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYTRYQKAAKGNVTA 337
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 13/243 (5%)
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+ +VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 126 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 185
Query: 256 TELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L
Sbjct: 186 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQP 244
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+++ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+V
Sbjct: 245 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKV 302
Query: 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
K +FV L + E+ + + +G++ +++ K KD+ FV F+ AAV
Sbjct: 303 KVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMD 354
Query: 434 SIN 436
+N
Sbjct: 355 EMN 357
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 131/246 (53%), Gaps = 13/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + ++ D L +F QVG++ ++RLMM+P T KN+G+AF+ F A +A +
Sbjct: 187 EIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAAKK 246
Query: 258 LK-NPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE--DS 314
+ ++ GK V S + LF+GNI K+ +KE + + K + + V D + D+
Sbjct: 247 FDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDA 305
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
NRGF FL+F A DA +++ L + V +A+ +P +E MA+VK
Sbjct: 306 GESRKNRGFCFLDFCDHKSASDAKRKIHAGK-LRAWNLDLVVDWAEQQEEPDEETMAKVK 364
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
++V L + E++++E+ +GE+ ++ K KD+ F+ F+ + AV ++
Sbjct: 365 VLYVRNLKEAVTEEQLKEMFSAHGEVDHVK--------KIKDYAFIHFNEREPAVKAMEA 416
Query: 435 INNAEL 440
+N L
Sbjct: 417 LNGTVL 422
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV S+
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNSL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 131/246 (53%), Gaps = 13/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + ++ D L +F QVG++ ++RLMM+P T KN+G+AF+ F A +A +
Sbjct: 199 EIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAAKK 258
Query: 258 LK-NPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE--DS 314
+ ++ GK V S + LF+GNI K+ +KE + + K + + V D + D+
Sbjct: 259 FDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDA 317
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
NRGF FL+F A DA +++ L + V +A+ +P +E MA+VK
Sbjct: 318 GESRKNRGFCFLDFCDHKSASDAKRKIHAGK-LRAWNLDLVVDWAEQQEEPDEETMAKVK 376
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
++V L + E++++E+ +GE+ ++ K KD+ F+ F+ + AV ++
Sbjct: 377 VLYVRNLKEAVTEEQLKEMFSAHGEVDHVK--------KIKDYAFIHFNEREPAVKAMEA 428
Query: 435 INNAEL 440
+N L
Sbjct: 429 LNGTVL 434
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F + G++ ++RLMM+P T N+G+AF+ F + + A AV E
Sbjct: 169 EVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAASNAVRE 228
Query: 258 LKNPVINGKQC-GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I C + S + LF+GNI K+ KE + ++ VE + + ++
Sbjct: 229 LNNYEIKPGNCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLVE-VIIYSSPDD 287
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ S A A +RL R ++ D V +AD +P ++ M++VK
Sbjct: 288 KKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCD--IIVDWADPQEEPDEQTMSKVKV 345
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E++++E + +G + +++ K KD+ FV F+ D AV K +
Sbjct: 346 LYVRNLTQDTSEEKLKESFEQFGRVERVK--------KIKDYAFVHFEDRDNAVKAMKDL 397
Query: 436 NNAELGEGDNKAKVRARLSRP 456
+ E+G G N + L++P
Sbjct: 398 DGKEVG-GSN---IEVSLAKP 414
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + L++P+ Q + + A+RG
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAARG 333
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 154/283 (54%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F+ + AV K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKPGAVERVK--------KIRDYAFVHFNKREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + L++P+ Q + + A+RG
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAARG 333
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 131/246 (53%), Gaps = 13/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + ++ D L +F QVG++ ++RLMM+P T KN+G+AF+ F A +A +
Sbjct: 199 EIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAAKK 258
Query: 258 LK-NPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE--DS 314
+ ++ GK V S + LF+GNI K+ +KE + + K + + V D + D+
Sbjct: 259 FDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDA 317
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
NRGF FL+F A DA +++ L + V +A+ +P +E MA+VK
Sbjct: 318 GESRKNRGFCFLDFCDHKSASDAKRKIHAGK-LRAWNLDLVVDWAEQQEEPDEETMAKVK 376
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
++V L + E++++E+ +GE+ ++ K KD+ F+ F+ + AV ++
Sbjct: 377 VLYVRNLKEAVTEEQLKEMFSAHGEVDHVK--------KIKDYAFIHFNEREPAVKAMEA 428
Query: 435 INNAEL 440
+N L
Sbjct: 429 LNGTVL 434
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 9/230 (3%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVT 256
EVFVGG+ + D L+ +GEV V L+ +PQ ++N+GF F++F T A A+
Sbjct: 78 EVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFGFVKFKTRAAATDALE 137
Query: 257 ELKNPVIN---GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
+L + G+ V PSQ L++GNI + +K+ LK +L V VE + L+
Sbjct: 138 KLAGKQLADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAELDAV-VKGVEVIELLMS 196
Query: 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI-MAQ 372
G NRGFAF+EF + + A A L R V++A+ D++ Q
Sbjct: 197 KEYPGNNRGFAFIEFYNHACAQLAKNALSAPTYTMH-GRSLNVAYAEP--KGADQVPTQQ 253
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
VK+V+V LPAS +E +++EL + +GE+TK+ + + P ++FGFV F
Sbjct: 254 VKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHF 303
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 155/305 (50%), Gaps = 35/305 (11%)
Query: 174 PEMVDAEEHDHHEMFQERRKRKE---------------FEVFVGGLDKDVVGDDLRKVFS 218
P ++ E + + QE +RK EVFVG + +DV D+L VF
Sbjct: 35 PALIQLMERTGYNLVQENGQRKYGGPPPGWEGLHPPRGCEVFVGKIPRDVYEDELVPVFE 94
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSD 277
G + E+RLMM+ KN+G+AF+ + +A++AV EL N I G+ GV S D+
Sbjct: 95 TAGRIYEMRLMMD-FDGKNRGYAFVMYTQKYEAKRAVKELNNYEIRPGRLLGVCCSVDNC 153
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMD 336
LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 154 RLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 212
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
K + R L+G V +A+ ID +++M VK ++V L ED ++++
Sbjct: 213 RRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQ 270
Query: 397 Y--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+ G + +++ K +D+ FV F + + AV ++NN EL EG + + L+
Sbjct: 271 FNPGCVERVK--------KIRDYAFVHFTSREDAVQAMNNLNNTEL-EG---SCLEVTLA 318
Query: 455 RPLQR 459
+P+ +
Sbjct: 319 KPVDK 323
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 179/368 (48%), Gaps = 44/368 (11%)
Query: 91 ERLDLDDNEPEYEPEEYGGVDYDDKETEHE-DVQEVGNEEDEHDDENVGEEEEDDLAEGE 149
E LDLD E E G D++E E + +V V +E+ DD N+ E+ AEG
Sbjct: 52 EGLDLDLVEDE------GSGSQDEQEAEQDVNVPNVDHEKLSEDDGNIDTVEDALPAEGN 105
Query: 150 MEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVV 209
GE+A++ D EE + E+ R EVFVG L +++
Sbjct: 106 ------------------GEKADK----DKEECNDDELLA--RPPHGTEVFVGNLPRNIT 141
Query: 210 GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269
+DL + Q GEV +V ++ + K + +AF+ F T E A++A+ L K+
Sbjct: 142 KEDLTSLCEQHGEVFDV--IIKREASKLE-YAFVTFTTKESAKKAIETLNGFEFKDKKLR 198
Query: 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
V+ SQ + LFLGNI +E L + + G + L L++D + NRGFAF+E+
Sbjct: 199 VSESQPKNRLFLGNIPSNLKEEELTKIVSEQG-PGYQHLELIKDPKDTTRNRGFAFVEYY 257
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDR 389
++ A A K + D+ V +A S +E VK+V+V LP + E++
Sbjct: 258 NKGCAEKAMKNMTHSKFQLD-DKLITVKWATSQRSSSEE----VKSVYVRNLPENVTEEQ 312
Query: 390 VRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
+REL +GE+TK+ L P ++DFGFV + H +A+ K+I E +++ ++
Sbjct: 313 LRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAM---KAIEKTEKYTLEDR-EL 368
Query: 450 RARLSRPL 457
L+RPL
Sbjct: 369 SVSLARPL 376
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 144/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTQKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L ED ++++ + G + +++ K +D+ FV F T + A+
Sbjct: 248 LYVRNLMIETTEDTIKKVFGQFNPGCVERVK--------KIRDYAFVHFTTREDAIHAMN 299
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N EL EG + + L++P+ +
Sbjct: 300 NLNGVEL-EG---SCLEVTLAKPVDK 321
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 144/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTQKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L ED ++++ + G + +++ K +D+ FV F T + A+
Sbjct: 248 LYVRNLMIETTEDTIKKVFGQFNPGCVERVK--------KIRDYAFVHFTTREDAIHAMN 299
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N EL EG + + L++P+ +
Sbjct: 300 NLNGVEL-EG---SCLEVTLAKPVDK 321
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 131/250 (52%), Gaps = 21/250 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + K+V D L +F +G++ ++RLMM+P T +N+G+AFL + A +A +
Sbjct: 314 EIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAAKK 373
Query: 258 LKN-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE--DS 314
++ GK V S + LF+GNI K+ +KE + + K + + V D + D+
Sbjct: 374 FDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDA 432
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK----VSFADSFIDPGDEIM 370
NRGF FL+F A DA KR + G RP V +A+ +P +E M
Sbjct: 433 GESRKNRGFCFLDFCDHKTASDA-----KRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 487
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
A+VK ++V L + E++++E+ YGE+ + + K +D+ F+ F + A+
Sbjct: 488 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIK 539
Query: 431 CAKSINNAEL 440
+++N EL
Sbjct: 540 AMEALNGTEL 549
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 73 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 131
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 132 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 190
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 191 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 248
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV S+
Sbjct: 249 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVRAMNSL 302
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + L++P+ Q + + A++G
Sbjct: 303 NGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKG 334
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 153/282 (54%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++AR A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F+ + AV K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERVK--------KIRDYAFVHFNKREDAVHAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 147/287 (51%), Gaps = 30/287 (10%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + ++ D L +F QVG++ ++RLMM+P T KN+G+AF+ F A +A +
Sbjct: 199 EIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAAKK 258
Query: 258 LK-NPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE--DS 314
+ ++ GK V S + LF+GNI K+ +KE + + K + + V D + D+
Sbjct: 259 FDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVVDCIIYTSPDA 317
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK----VSFADSFIDPGDEIM 370
NRGF FL+F A DA KR + G RP V +A+ +P +E M
Sbjct: 318 GANRKNRGFCFLDFCDHKAASDA-----KRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 372
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
++VK ++V L + E++++E+ +GE+ + + K +D+ F+ F + A+
Sbjct: 373 SKVKVLYVRNLKEAVTEEQLKEMFAAHGEVER--------AKKIRDYAFIHFKEREPALK 424
Query: 431 CAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTG 477
+++N L EG + L++P +G K RG GRG G
Sbjct: 425 AMEALNGTVL-EG---IAIEISLAKP--QGDKKKTVRG---RGRGFG 462
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 17/248 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV +DL+++F VGEV EVR+ N+ +AF+ F T A +A+
Sbjct: 105 EVYVGGISSDVSSEDLKQLFESVGEVVEVRMR---GKGDNRTYAFINFRTKAMALKAIQN 161
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N + GK+ V+PSQ + LF+GN+ WT + K ++ G ++ VE
Sbjct: 162 LSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVGPGVLK----VELMKAP 217
Query: 318 GM--NRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
G+ N+G+ F+E+ +++ A A +++ + + P VS+AD AQVK+
Sbjct: 218 GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPT-VSWADPKNANEATSTAQVKS 276
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVTCA 432
++V LP + ++++++L ++ GEITK+ + P AK +GFV F A+
Sbjct: 277 LYVKNLPKTVTQEQLKKLFEHVGEITKVVV----PPAKSGHENRYGFVHFKERYMAMKAL 332
Query: 433 KSINNAEL 440
K+ EL
Sbjct: 333 KNTERYEL 340
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 153/282 (54%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++AR A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F+ + AV K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERVK--------KIRDYAFVHFNKREDAVHAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 153/283 (54%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 60 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 118
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 119 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 177
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 178 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 235
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 236 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 287
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 288 ALN----GKMLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 324
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 74 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVTYCHKGEAKRAVRE 132
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 133 LNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 191
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 192 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 249
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV S+
Sbjct: 250 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNSL 303
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 304 NGTEL-EGSC---LEVTLAKPVDK 323
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 144/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTQKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L ED ++++ + G + +++ K +D+ FV F T + A+
Sbjct: 248 LYVRNLMIETTEDTIKKVFGQFNPGCVERVK--------KIRDYAFVHFTTREDAIHAMN 299
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N EL EG + + L++P+ +
Sbjct: 300 NLNGVEL-EG---SCLEVTLAKPVDK 321
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 34/313 (10%)
Query: 176 MVDAEEHDHHEMFQERRKRKE---------------FEVFVGGLDKDVVGDDLRKVFSQV 220
+V E + M QE +RK EVFVG + +DV D+L VF V
Sbjct: 35 LVALMERTGYSMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVYEDELVPVFEAV 94
Query: 221 GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTL 279
G + E+RLMM+ KN+G+AF+ + +A++AV EL N I G+ GV S D+ L
Sbjct: 95 GRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRL 153
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAF 338
F+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 154 FIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 212
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
K + R L+G V +A+ ID +++M VK ++V L ED ++ K++G
Sbjct: 213 KLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK---KSFG 267
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL- 457
+ + R K +D+ FV F + + AV ++N EL EG + L++P+
Sbjct: 268 QFNPGCVER---VKKIRDYAFVHFASREDAVQAMNNLNGTEL-EGSC---LEVTLAKPVD 320
Query: 458 --QRGKGKHASRG 468
Q + + A++G
Sbjct: 321 KEQYSRYQKAAKG 333
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 131/250 (52%), Gaps = 21/250 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + K+V D L +F +G++ ++RLMM+P T +N+G+AFL + A +A +
Sbjct: 294 EIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEAAKK 353
Query: 258 LKN-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE--DS 314
++ GK V S + LF+GNI K+ +KE + + K + + V D + D+
Sbjct: 354 FDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDA 412
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK----VSFADSFIDPGDEIM 370
NRGF FL+F A DA KR + G RP V +A+ +P +E M
Sbjct: 413 GESRKNRGFCFLDFCDHKTASDA-----KRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 467
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
A+VK ++V L + E++++E+ YGE+ + + K +D+ F+ F + A+
Sbjct: 468 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIK 519
Query: 431 CAKSINNAEL 440
+++N EL
Sbjct: 520 AMEALNGTEL 529
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 149/278 (53%), Gaps = 23/278 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKNEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L ED ++++ + G + +++ K +D+ FV F + + AV K
Sbjct: 248 LYVRNLMMETTEDTIKKIFGQFNPGCVERVK--------KIRDYAFVHFASREDAVHAMK 299
Query: 434 SINNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
+N +L EG + L++P+ Q + + A++G
Sbjct: 300 KLNGTDL-EGSC---LEVTLAKPVDKEQYSRYQKAAKG 333
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 135 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 194
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 195 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 253
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 254 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 311
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 312 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 363
Query: 436 N 436
N
Sbjct: 364 N 364
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 131/250 (52%), Gaps = 21/250 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + K+V D L +F +G++ ++RLMM+P T +N+G+AFL + A +A +
Sbjct: 281 EIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAAKK 340
Query: 258 LKN-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE--DS 314
++ GK V S + LF+GNI K+ +KE + + K + + V D + D+
Sbjct: 341 FDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDA 399
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK----VSFADSFIDPGDEIM 370
NRGF FL+F A DA KR + G RP V +A+ +P +E M
Sbjct: 400 GESRKNRGFCFLDFCDHKTASDA-----KRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 454
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
A+VK ++V L + E++++E+ YGE+ + + K +D+ F+ F + A+
Sbjct: 455 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIK 506
Query: 431 CAKSINNAEL 440
+++N EL
Sbjct: 507 AMEALNGTEL 516
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPMDK 321
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 151/281 (53%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + + G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKFGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV PS D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCPSVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F+ + AV K++
Sbjct: 233 LYVRNLMLSTSEETIE---KEFDSIKPGSVER---VKKIRDYAFVHFNNREDAVNAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GRG
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGA 321
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
P + +F+G + + ++ L + +G + ++ ++ D N G NRG+AF+ FS+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKFG--KIYEMRMMMDFN--GNNRGYAFVTFSN 105
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
+ +A +A K+L ++ R ++ +D +FV G+P + + +
Sbjct: 106 KQEAKNAIKQLNNYEI-----RNGRLLGVCPSVDNCR--------LFVGGIPKTKKREEI 152
Query: 391 RELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
+K G + I K + F FV +++H AA
Sbjct: 153 LSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAA 192
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 151/280 (53%), Gaps = 19/280 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + D AV S+
Sbjct: 248 LYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSRDDAVHAMNSL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRGDFRS 472
N EL EG + + L++P+ Q + + A++G+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYTRYQKAAKGNVTA 337
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 161/322 (50%), Gaps = 36/322 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEIIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLP 493
++N G+ + + + L++P+ + +RG GRGT LP
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT--------------MLP 324
Query: 494 GRSARGIGSRLPPASVKRPVPV 515
G +G P + PV
Sbjct: 325 GEYTYSLGHIYDPTTTYLGAPV 346
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 92
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 209
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 210 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 263
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 264 NGTEL-EG---SCLEVTLAKPVDK 283
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 92
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 209
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 210 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 263
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 264 NGTEL-EG---SCLEVTLAKPVDK 283
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 148/277 (53%), Gaps = 19/277 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + + AV S+
Sbjct: 248 LYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNSL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRGD 469
N EL EG + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDKEQYTRYQKAAKGS 334
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 92
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 209
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 210 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 263
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 264 NGTEL-EG---SCLEVTLAKPVDK 283
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 143/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 63 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKNEAKRAVRE 121
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 122 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 180
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 181 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 238
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L ED ++++ + G + +++ K +D+ FV F + + AV
Sbjct: 239 LYVRNLMIETTEDTIKKIFGQFNPGCVERVK--------KIRDYAFVHFASREDAVHAMN 290
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N EL EG + L++P+ +
Sbjct: 291 NLNGTEL-EGSC---LEVTLAKPVDK 312
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 153/283 (54%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNRQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + A+ K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAMEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
P + +F+G + + ++ L + G + ++ ++ D N G NRG+AF+ FS+R
Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIG--KIYEMRMMMDFN--GNNRGYAFVTFSNR 106
Query: 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVR 391
+A +A K+L ++ R ++ + +D +FV G+P + + +
Sbjct: 107 QEAKNAIKQLNNYEI-----RNGRLLGVCASVDNCR--------LFVGGIPKTKKREEIL 153
Query: 392 ELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+K G + I ++ + F FV +++H A + +
Sbjct: 154 AEMKKVTEGVVDVIVYPSAADKSRNRGFAFVEYESHRTAAMARRKL 199
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 34 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 92
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 93 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 151
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 152 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 209
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 210 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 263
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 264 NGTEL-EG---SCLEVTLAKPVDK 283
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 139/262 (53%), Gaps = 8/262 (3%)
Query: 178 DAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
D E+ H E+ + E V+VGG+ D +DL++ +GEV +VR+ +N
Sbjct: 330 DDEKKKHAELLSLPHHKSE--VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASEN 387
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 297
+GFAF+ + ++E A +A+ EL N + + SQ LF+GNI ++W ++ LK+ +
Sbjct: 388 RGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVV 447
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
G V + L++D N NRG+AF+++ + A + +++ G + P V+
Sbjct: 448 SDIG-PGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPT-VN 505
Query: 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417
+A+ + +QVK V+V LP + ++++++L +++G+ITK+ L P ++
Sbjct: 506 WAEP-KNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRI 564
Query: 418 GFVTFDTHDAAVTCAKSINNAE 439
GFV F A+ K++ N E
Sbjct: 565 GFVHFAERSNAM---KALKNTE 583
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 40/297 (13%)
Query: 109 GVDYDDKETEHEDVQEVGNEEDEHDDENVG-------EEEEDDLAEGEMEDVPEEHGQGE 161
+D DD++ +H ++ + + + E VG E+ + E E V +G+
Sbjct: 326 NLDDDDEKKKHAELLSLPHHKSE---VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGK 382
Query: 162 EEVENAGEEAERPEMVDAEEHDHHEM---------FQERRKRKEFEVFVGGLDKDVVGDD 212
+ EN G ++ E+ + + + + +F+G + + D
Sbjct: 383 DASENRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKD 442
Query: 213 LRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRF---ATVEQARQAVTEL------KNP 261
L+KV S +G VT V L+ + + N+G+AF+ + E +RQ +T P
Sbjct: 443 LKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFP 502
Query: 262 VING---KQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG 318
+N K + S +++ N+ K TKE LK+ +H+G + + L +
Sbjct: 503 TVNWAEPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHG--KITKVVLPPPKPGQE 560
Query: 319 MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NR F+ F+ RS+AM A K +K VL G + + S A DP +++ ++T
Sbjct: 561 KNR-IGFVHFAERSNAMKALKNTEKY-VLDG--QILECSLAKQQADP-KAVVSNIQT 612
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
V+V G+P + ++E + GE+ ++ + + +++ + F FVT+ + + A K +
Sbjct: 349 VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKEL 408
Query: 436 NNAELGEGD---NKAKVRARL 453
NN E G +K++ ++RL
Sbjct: 409 NNTEFKAGKIKCSKSQAKSRL 429
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 158/320 (49%), Gaps = 41/320 (12%)
Query: 167 AGEEAERPE----------MVDAEEHDHHEMFQERRKRKE---------------FEVFV 201
AG A+ PE ++ E + M QE +RK EVFV
Sbjct: 16 AGSSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPGWEGPHPQRGCEVFV 75
Query: 202 GGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261
G + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV EL N
Sbjct: 76 GKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNY 134
Query: 262 VIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMN 320
I G+ GV S D+ LF+G I K +E + E++ + V D+ + + ++ N
Sbjct: 135 EIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYAGAADKMKN 193
Query: 321 RGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVD 379
RGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK ++V
Sbjct: 194 RGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVR 251
Query: 380 GLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439
L ED ++ K++G+ + R K +D+ FV F + + AV ++N E
Sbjct: 252 NLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTE 305
Query: 440 LGEGDNKAKVRARLSRPLQR 459
L EG + L++P+ +
Sbjct: 306 L-EGSC---LEVTLAKPVDK 321
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 71 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKNEAKRAVRE 129
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 130 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 188
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 189 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 246
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 247 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 300
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 301 NGTEL-EGSC---LEVTLAKPVDK 320
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFTNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N L + + + L++P+ + +RG GRGT
Sbjct: 285 ALNGKVL----DGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 160/315 (50%), Gaps = 38/315 (12%)
Query: 176 MVDAEEHDHHEMFQERRKRKE---------------FEVFVGGLDKDVVGDDLRKVFSQV 220
+++ E + M QE +RK EVFVG + +DV D+L VF
Sbjct: 35 LINLMERTGYTMVQENGQRKYGGPPPGWEGSPPPRGCEVFVGKIPRDVYEDELVPVFESA 94
Query: 221 GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTL 279
G + E+RLMM+ KN+G+AF+ F +A+QAV EL N I G+ GV S D+ L
Sbjct: 95 GRIFEMRLMMDFD-GKNRGYAFVMFTKKHEAKQAVRELNNYEIRPGRLLGVCCSVDNCRL 153
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAF 338
F+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 154 FIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 212
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY- 397
K + R L+G V +A+ ID +++M VK ++V L ED ++++ +
Sbjct: 213 KLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETSEDTIKKIFGQFN 270
Query: 398 -GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
G + +++ K +D+ FV F + + AV + +N EL EG + + L++P
Sbjct: 271 PGCVERVK--------KIRDYAFVHFSSREDAVQSMRKLNGTEL-EG---SCIEVTLAKP 318
Query: 457 L---QRGKGKHASRG 468
+ Q + + A++G
Sbjct: 319 VDKEQYTRYQKAAKG 333
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 38/313 (12%)
Query: 176 MVDAEEHDHHEMFQERRKRKE---------------FEVFVGGLDKDVVGDDLRKVFSQV 220
+V E + M QE +RK EVFVG + +DV D+L VF V
Sbjct: 35 LVALMERTGYSMVQENGQRKYGGPPPGWEGAHPQRGCEVFVGKIPRDVYEDELVPVFEAV 94
Query: 221 GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTL 279
G + E+RLMM+ KN+G+AF+ + +A++AV EL N I G+ GV S D+ L
Sbjct: 95 GRIYELRLMMD-FDGKNRGYAFIMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRL 153
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAF 338
F+G I K +E + + + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 154 FIGGIPKLKKREEIAKV-----TEGVLDVIMYASAADKMKNRGFAFVEYESHRAAAMARR 208
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
K + R L+G V +A+ ID +++M VK ++V L ED ++ K++G
Sbjct: 209 KLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK---KSFG 263
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL- 457
+ + R K +D+ FV F + + AV ++N EL EG + L++P+
Sbjct: 264 QFNPGCVER---VKKIRDYAFVHFTSREDAVHAMSNLNGTEL-EGSC---LEVTLAKPVD 316
Query: 458 --QRGKGKHASRG 468
Q + + A++G
Sbjct: 317 KEQYSRYQKAAKG 329
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + L++P+ Q + + A+RG
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAARG 333
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKNEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 31 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 89
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 90 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 148
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 149 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 206
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 207 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 258
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 259 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 295
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 73 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 131
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 132 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 190
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 191 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 248
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV S+
Sbjct: 249 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVRAMNSL 302
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + L++P+ Q + + A++G
Sbjct: 303 NGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKG 334
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV +DL+++ VGEV EVR+M ++G+AF+ F T A +AV E
Sbjct: 112 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKAVKE 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNN 316
L N + GK+ V+ SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N
Sbjct: 170 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANR 229
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKT 375
NRG+ F+E+ + + A + R + F +D A VS+AD + +QVK+
Sbjct: 230 ---NRGYGFVEYYNHACA--EYARQEMSSPTFKLDSNAPTVSWADPKNNDSAST-SQVKS 283
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAK 433
V+V LP + + +++ L +++GEI K+ L PS D +GFV F A+ +
Sbjct: 284 VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---R 337
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
++ N E E D + + L++P
Sbjct: 338 ALQNTERYELDGQV-LDCSLAKP 359
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV +DL+++ VGEV EVR+M ++G+AF+ F T A +AV E
Sbjct: 112 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKAVKE 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNN 316
L N + GK+ V+ SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N
Sbjct: 170 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANR 229
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKT 375
NRG+ F+E+ + + A + R + F +D A VS+AD + +QVK+
Sbjct: 230 ---NRGYGFVEYYNHACA--EYARQEMSSPTFKLDSNAPTVSWADPKNNDSAST-SQVKS 283
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAK 433
V+V LP + + +++ L +++GEI K+ L PS D +GFV F A+ +
Sbjct: 284 VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---R 337
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
++ N E E D + + L++P
Sbjct: 338 ALQNTERYELDGQV-LDCSLAKP 359
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 31 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 89
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 90 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 148
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 149 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 206
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 207 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 258
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 259 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 295
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 31 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 89
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 90 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 148
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 149 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 206
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 207 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 258
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 259 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 295
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKNEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 150/290 (51%), Gaps = 21/290 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF G + EVRLMM+ +N+G+AF+ + + + A++ V
Sbjct: 58 EVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSKDDAKRCVKT 116
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K K+ + ++ DNV D+ + + +
Sbjct: 117 LNNYEIRKGKCIGVCSSVDNCRLFVGGIPKKVKKDEIMAEVSKV-TDNVVDVIVYPSAQD 175
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S DA A ++L + L+G V +A+ + EIM QVK
Sbjct: 176 KTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWG--HQIAVDWAEPEQEVDQEIMDQVKV 233
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++ L S E+ + + +GE+ +++ K KD+ F+ F T + A +++
Sbjct: 234 LYARNLLLSTTEETIEQAFSKFGEVERVK--------KIKDYCFIHFRTKEQARDAMEAM 285
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWG 485
N EL +G+ ++ L++P+ + H S FR GT G +G
Sbjct: 286 NETEL-DGN---EIEVTLAKPVDKD---HRSPLLFRGYYGTPSMRPGFYG 328
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 145/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++AR A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAIRQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEIKKV-TDGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSAVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + + E + I+ K +D+ FV F+ + AV K +
Sbjct: 233 LYVRNLMLSTTEETIEK------EFSSIKPGSVERVKKIRDYAFVHFNNREDAVEAMKVL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N G+ + + ++ L++P+ +
Sbjct: 287 N----GKMVDGSPIKVTLAKPVDK 306
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 17/263 (6%)
Query: 182 HDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFA 241
H + +FQE EVF+G + +D + D+L + + GE+ E RL M+P T NKGFA
Sbjct: 99 HSYESVFQESGT----EVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFA 154
Query: 242 FLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY 300
F F A QA+T L + I G++ + S+ + LF+ I K +KE + ++
Sbjct: 155 FCTFTKQTSAYQAITTLNDKDIRPGRRLAICKSRSNSRLFVKGIPKRKSKEEIFQEFSKV 214
Query: 301 GVDNVEDLTLVE--DSNNEG-MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
D ++D+ + + D N G +NRGF FLE+++ A R V V+
Sbjct: 215 TTD-LQDVIVYQSCDQGNHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWGKVLEAVT 273
Query: 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417
+A++ P +M++VK+++V +P E +++ + YG+I K+ K +D+
Sbjct: 274 WAEAREIPDYAVMSKVKSIYVRNVPLPMSETQLKAVFTKYGQIEKVR--------KIRDY 325
Query: 418 GFVTFDTHDAAVTCAKSINNAEL 440
GFV F ++AV IN A +
Sbjct: 326 GFVYFAKRESAVQAIDGINGAYI 348
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 144/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTQKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L ED ++++ + G + +++ K +D+ FV F T + A+
Sbjct: 248 LYVRNLMIETTEDTIKKVFGQFNPGCVERVK--------KIRDYAFVHFTTREDAIHAMN 299
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N EL EG + + L++P+ +
Sbjct: 300 NLNGVEL-EG---SCLEVTLAKPVDK 321
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF +G + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETMGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEVAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 108 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKSEAKRAVRE 166
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 167 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 225
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 226 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 283
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 284 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNL 337
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 338 NGTEL-EGSC---LEVTLAKPVDK 357
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKSEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 120/208 (57%), Gaps = 7/208 (3%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL KD + DDLR + +G++ E+RLM + T ++KGFAF+ F + E A++A+ E
Sbjct: 110 EVFIGGLPKDALEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEE 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY--GVDNVEDLTLVEDSN 315
+ + GK + S+ + LF+GN+ K WT++ ++ ++ GVD +E L+ D
Sbjct: 170 IHSKEFKGKTLRCSLSETKNRLFVGNVPKNWTEDEFRKVVEEVGPGVDIIE---LIRDPQ 226
Query: 316 NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDE-IMAQVK 374
N NRGFAF+ + + + A + +++ + + P VS+AD P AQVK
Sbjct: 227 NPSRNRGFAFVLYYNNACADYSRQKMLNANFKLEGNTPT-VSWADPKGTPDQSAAAAQVK 285
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITK 402
++V +P + ++++EL + +GE +
Sbjct: 286 ALYVKNIPENTSTEQLKELFQRHGEAVR 313
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
VF+ GLP ED +R+L + G+I +I L ++ + + K F FV F + + A + I
Sbjct: 111 VFIGGLPKDALEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEEI 170
Query: 436 NNAEL 440
++ E
Sbjct: 171 HSKEF 175
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 139 EEEEDDLAE--GEMEDVPEEHGQGEEEVENAGEEAERPEMV--DAEEHDHHEMFQERRKR 194
E++ DL E G++ ++ + E + A R + V A E H + F+ + R
Sbjct: 122 EDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEEIHSKEFKGKTLR 181
Query: 195 KEFE-----VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQT-KKNKGFAFLRF-- 245
+FVG + K+ D+ RKV +VG V + L+ +PQ +N+GFAF+ +
Sbjct: 182 CSLSETKNRLFVGNVPKNWTEDEFRKVVEEVGPGVDIIELIRDPQNPSRNRGFAFVLYYN 241
Query: 246 -ATVEQARQAV------TELKNPVINGKQCGVTPSQDS-----DTLFLGNICKTWTKEAL 293
A + +RQ + E P ++ TP Q + L++ NI + + E L
Sbjct: 242 NACADYSRQKMLNANFKLEGNTPTVSWADPKGTPDQSAAAAQVKALYVKNIPENTSTEQL 301
Query: 294 KEKLKHYG 301
KE + +G
Sbjct: 302 KELFQRHG 309
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 17/248 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV +DL+++F VGEV EVR+ N+ +AF+ F T A +A+
Sbjct: 105 EVYVGGISSDVSSEDLKQLFESVGEVVEVRMR---GKGDNRTYAFINFRTKAMALKAIQN 161
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N + GK+ V+PSQ + LF+GN+ WT + K ++ G ++ VE
Sbjct: 162 LSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVGPGVLK----VELMKAP 217
Query: 318 GM--NRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
G+ N+G+ F+E+ +++ A A +++ + + P VS+AD AQVK+
Sbjct: 218 GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPT-VSWADPKNANEATSTAQVKS 276
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTFDTHDAAVTCA 432
++V LP + ++++++L ++ GEITK+ + P AK +GFV F A+
Sbjct: 277 LYVKNLPKTVTQEQLKKLFEHVGEITKVVV----PPAKSGHENRYGFVHFKERYMAMKAL 332
Query: 433 KSINNAEL 440
K+ EL
Sbjct: 333 KNTERYEL 340
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 145/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ EVR+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F+ D AV K++
Sbjct: 233 LYVRNLMLSTSEETLE---KEFNSIKPGSVER---VKKIRDYAFVHFNNRDDAVNAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N G+ + + + L++P+ +
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDK 306
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 144/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTQKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L ED ++++ + G + +++ K +D+ FV F T + A+
Sbjct: 248 LYVRNLMIETTEDTIKKVFGQFNPGCVERVK--------KIRDYAFVHFTTREDAIHAMN 299
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N EL EG + + L++P+ +
Sbjct: 300 NLNGVEL-EG---SCLEVTLAKPVDK 321
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 17/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G L V D+L +F + G++ ++RLMM+P + N+G+AF+ + T E+A +A E
Sbjct: 160 EVFCGKLPNTVFEDELIPLFEKCGKIYDLRLMMDPLSGTNRGYAFVTYTTKEEAERATVE 219
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L I GK V S + LF+GNI K+ KE + E+ + ++ + ++
Sbjct: 220 LDGYEIKPGKNIKVNISVPNLRLFIGNIPKSKGKEDIMEEFGKI-TSGLTEVIIYSSPDD 278
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NRGF FLE+ S A A +RL + ++G D V +AD +P DE M++VK
Sbjct: 279 RRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGCD--IIVDWADPQEEPDDETMSKVKV 336
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+R++E + +G + +++ K KD+ F+ F+ A+ + +
Sbjct: 337 LYVRNLTQEVTENRLKETFEVHGSVERVK--------KIKDYAFIHFNDRGCALKALEEL 388
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N + L + A + L++P
Sbjct: 389 NGSNL----DGATLEVSLAKP 405
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 145/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ EVR+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F+ D AV K++
Sbjct: 233 LYVRNLMLSTSEETLE---KEFNSIKPGSVER---VKKIRDYAFVHFNNRDDAVNAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N G+ + + + L++P+ +
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDK 306
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 152/301 (50%), Gaps = 31/301 (10%)
Query: 176 MVDAEEHDHHEMFQERRKRKE---------------FEVFVGGLDKDVVGDDLRKVFSQV 220
++ E + M QE +RK EVFVG + +DV D+L VF V
Sbjct: 40 LLALMERTGYSMLQENGQRKYGGPPPGWEGLHPPRGCEVFVGKIPRDVYEDELVPVFESV 99
Query: 221 GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN-PVINGKQCGVTPSQDSDTL 279
G + E+RLMM+ KN+G+AF+ + +A++AV EL N V G+ GV S D+ L
Sbjct: 100 GRIYEMRLMMD-FDGKNRGYAFVTYTHKHEAKRAVRELNNYEVRPGRLLGVCCSVDNCRL 158
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAF 338
F+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 159 FIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 217
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
K + R L+G V +A+ ID +++M VK ++V L E+ ++ K++G
Sbjct: 218 KLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEEAIK---KSFG 272
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
+ + R K +D+ FV F + + AV S+N EL EG + L++P+
Sbjct: 273 QFNPGCVER---VKKIRDYAFVHFVSREDAVRAMNSLNGTEL-EGSC---LEVTLAKPVD 325
Query: 459 R 459
+
Sbjct: 326 K 326
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 153/283 (54%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNRQEAKDAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRG+
Sbjct: 285 ALN----GKMLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGS 321
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
P + +F+G + + ++ L + G + ++ ++ D N G NRG+AF+ FS+R
Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIG--KIYEMRMMMDFN--GNNRGYAFVTFSNR 106
Query: 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVR 391
+A DA K+L ++ R ++ + +D +FV G+P + + +
Sbjct: 107 QEAKDAIKQLNNYEI-----RNGRLLGVCASVDNCR--------LFVGGIPKTKKREEIL 153
Query: 392 ELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+K G + I + + F FV +++H A + +
Sbjct: 154 AEMKKVTEGVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKL 199
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 109 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKNEAKRAVRE 167
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 168 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 226
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 227 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 284
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 285 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNL 338
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 339 NGTEL-EGSC---LEVTLAKPVDK 358
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV +DL+++ VGEV EVR+M ++G+AF+ F T A +AV E
Sbjct: 125 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKAVKE 182
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNN 316
L N + GK+ V+ SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N
Sbjct: 183 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANR 242
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKT 375
NRG+ F+E+ + + A + R + F +D A VS+AD + +QVK+
Sbjct: 243 ---NRGYGFVEYYNHACA--EYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKS 296
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAK 433
V+V LP + + +++ L +++GEI K+ L PS D +GFV F A+ +
Sbjct: 297 VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---R 350
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
++ N E E D + + L++P
Sbjct: 351 ALQNTERYELDGQV-LDCSLAKP 372
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKNEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 153/283 (54%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNRQEAKDAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRG+
Sbjct: 285 ALN----GKMLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGS 321
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
P + +F+G + + ++ L + G + ++ ++ D N G NRG+AF+ FS+R
Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIG--KIYEMRMMMDFN--GNNRGYAFVTFSNR 106
Query: 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVR 391
+A DA K+L ++ R ++ + +D +FV G+P + + +
Sbjct: 107 QEAKDAIKQLNNYEI-----RNGRLLGVCASVDNCR--------LFVGGIPKTKKREEIL 153
Query: 392 ELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+K G + I + + F FV +++H A + +
Sbjct: 154 AEMKKVTEGVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKL 199
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 174/341 (51%), Gaps = 40/341 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKT 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F+ + AV K++
Sbjct: 233 LYVRNLMLSTTEETIE---KEFNSIKPGAVER---VKKIRDYAFVHFNKREHAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPL--------QRGKGKHA--SRGDFRSGRGT----GRATR 481
N G+ + + + L++P+ RG G A +GD+ G A
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRAPVLQGDYTYTLGHLYDPTAAYL 342
Query: 482 GSWGLPSPRS------LPGRSARGIGSRLPPASVKRPVPVR 516
G+ +P++ L +A+G+GSR S+ RP VR
Sbjct: 343 GAPVFYAPQAYAAIPNLHFPAAKGLGSR----SILRPPSVR 379
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 153/283 (54%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
+++ G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALH----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 153/282 (54%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKMGKIYEMRMMMD-FNGNNRGYAFVTFSNRQEAKDAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSSREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 153/283 (54%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
+++ G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALH----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVQAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDKEQYSRYQKAAKG 333
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 27/296 (9%)
Query: 128 EEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
EE E+++ ++D EGE D HG E+E+ +P ++D EE + H+
Sbjct: 48 EEHEYEETAAEAGQKDQFPEGEKSD----HGAEEDEL--------KPALIDEEEREKHDE 95
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
R EVF+GGL +D DD+R++ +G++ E++L+ + +T ++KG+AF+ + T
Sbjct: 96 LLSRPPHGS-EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKT 154
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
E A++A+ ++ N GK S+ LF+GNI KTWT++ ++ ++ G VE
Sbjct: 155 KEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVG-PGVES 213
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPG 366
+ L++D N+ NRGFAF+ + ++A F R + V F +D V++AD P
Sbjct: 214 IDLIKDPQNQSRNRGFAFVLYY--NNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Query: 367 DEIMAQ------VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD 416
A V+ V + G W V+ +N + ++ + R M R D
Sbjct: 272 QSAAASQFYRTAVQPVLLYGT-ECW---AVKSQHENQVSVAEMRMLRWMSGKTRHD 323
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 109/253 (43%), Gaps = 24/253 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTK-KNKGFAFLRF---ATVEQARQ 253
+F+G + K D+ RK VG V + L+ +PQ + +N+GFAF+ + A + +RQ
Sbjct: 186 LFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQ 245
Query: 254 AVTELKNPVINGKQCGVTPS---QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
++ + K G+TP+ D T + + + + YG + +
Sbjct: 246 KMSS-----VGFKLDGITPTVTWADPKTSPDQSAAASQFYRTAVQPVLLYGTECWAVKSQ 300
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL---FGVDRPAKVSFADSFIDPGD 367
E+ + R ++ +R D + + D + GV + + G
Sbjct: 301 HENQVSVAEMRMLRWMSGKTRHDRI-------RNDTIRERVGVAPIVEKLVENRLRWFGH 353
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
VK ++V +P + ++++EL + +GE+TK+ + S KR DFGF+ + +
Sbjct: 354 VERRPVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKR-DFGFIHYAERSS 412
Query: 428 AVTCAKSINNAEL 440
A+ K E+
Sbjct: 413 ALKAVKETEKYEI 425
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
VF+ GLP +D VREL + G+I +I+L ++ + + K + FV + T + A I
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 436 NNAEL 440
+N E
Sbjct: 166 HNKEF 170
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 5/208 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKI 403
+FV L + E+ + + +G++ ++
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERV 367
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 152/282 (53%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFTNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 152/282 (53%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFTNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 139/262 (53%), Gaps = 8/262 (3%)
Query: 178 DAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
D E+ H E+ + E V+VGG+ D +DL++ +GEV +VR+ +N
Sbjct: 365 DDEKKKHAELLSLPHHKSE--VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASEN 422
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 297
+GFAF+ + ++E A +A+ EL N + + SQ LF+GNI ++W ++ LK+ +
Sbjct: 423 RGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVV 482
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
G V + L++D N NRG+AF+++ + A + +++ G + P V+
Sbjct: 483 SDIG-PGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPT-VN 540
Query: 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417
+A+ + +QVK V+V LP + ++++++L +++G+ITK+ L P ++
Sbjct: 541 WAEP-KNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRI 599
Query: 418 GFVTFDTHDAAVTCAKSINNAE 439
GFV F A+ K++ N E
Sbjct: 600 GFVHFAERSNAM---KALKNTE 618
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 36/265 (13%)
Query: 109 GVDYDDKETEHEDVQEVGNEEDEHDDENVG-------EEEEDDLAEGEMEDVPEEHGQGE 161
+D DD++ +H ++ + + + E VG E+ + E E V +G+
Sbjct: 361 NLDDDDEKKKHAELLSLPHHKSE---VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGK 417
Query: 162 EEVENAGEEAERPEMVDAEEHDHHEM---------FQERRKRKEFEVFVGGLDKDVVGDD 212
+ EN G ++ E+ + + + + +F+G + + D
Sbjct: 418 DASENRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKD 477
Query: 213 LRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRF---ATVEQARQAVTEL------KNP 261
L+KV S +G VT V L+ + + N+G+AF+ + E +RQ +T P
Sbjct: 478 LKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFP 537
Query: 262 VING---KQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG 318
+N K + S +++ N+ K TKE LK+ +H+G + + L +
Sbjct: 538 TVNWAEPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHG--KITKVVLPPPKPGQE 595
Query: 319 MNRGFAFLEFSSRSDAMDAFKRLQK 343
NR F+ F+ RS+AM A K +K
Sbjct: 596 KNR-IGFVHFAERSNAMKALKNTEK 619
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
V+V G+P + ++E + GE+ ++ + + +++ + F FVT+ + + A K +
Sbjct: 384 VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKEL 443
Query: 436 NNAELGEGD---NKAKVRARL 453
NN E G +K++ ++RL
Sbjct: 444 NNTEFKAGKIKCSKSQAKSRL 464
Score = 39.7 bits (91), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRL-MMNPQTKKNKGFAFLRFATVEQARQAVT 256
EV+V L K+V + L+K+F G++T+V L P +KN+ F+ FA A +A+
Sbjct: 557 EVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNR-IGFVHFAERSNAMKALK 615
Query: 257 ELKNPVINGK--QCGVTPSQDSDTLFLGNI 284
+ V++G+ +C + Q + NI
Sbjct: 616 NTEKYVLDGQILECSLAKQQADPKAVVSNI 645
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 141/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQ-KRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + + E I+ K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIEK------EFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N L + + + L++P+ +
Sbjct: 287 NGKVL----DGSPIEVTLAKPVDK 306
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 129/246 (52%), Gaps = 21/246 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + K+V D L +F +G++ ++RLMM+P T +N+G+AFL + A +A +
Sbjct: 293 EIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEAAKK 352
Query: 258 LKN-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE--DS 314
++ GK V S + LF+GNI K+ +KE + + K + + V D + D+
Sbjct: 353 FDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEH-TEGVTDCIIYSSPDA 411
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK----VSFADSFIDPGDEIM 370
NRGF FL+F A DA KR + G RP V +A+ +P +E M
Sbjct: 412 GESRKNRGFCFLDFCDHKTASDA-----KRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 466
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
A+VK ++V L + E++++E+ YGE+ + + K +D+ F+ F + A+
Sbjct: 467 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIK 518
Query: 431 CAKSIN 436
+++N
Sbjct: 519 AMEALN 524
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 149/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVMYTHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + + AV S+
Sbjct: 248 LYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNSL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYTRYQKAAKG 333
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 152/282 (53%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFTNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 152/282 (53%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFTNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 146/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVKAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N G+ + + + L++P+ +
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDK 306
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 162/337 (48%), Gaps = 38/337 (11%)
Query: 142 EDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE----- 196
ED A + P + E V A EA ++ E + M QE +RK
Sbjct: 147 EDSTAAMSSDPAPAAAVRVPEGVAGAPNEAA---LLALMERTGYTMVQENGQRKYGGPPP 203
Query: 197 ----------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ +
Sbjct: 204 GWEGEHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYC 262
Query: 247 TVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNV 305
A++AV EL N I G+ GV S D+ LF+G I K +E + E++ + V
Sbjct: 263 HKADAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGV 321
Query: 306 EDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364
D+ + + ++ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID
Sbjct: 322 LDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEID 379
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTF 422
+++M VK ++V L ED ++++ + G + +++ K +D+ FV F
Sbjct: 380 VDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVK--------KIRDYAFVHF 431
Query: 423 DTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
+ + AV +N EL EG + L++P+ +
Sbjct: 432 ASREDAVHAMNHLNGTEL-EGSC---LEVTLAKPVDK 464
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 151/282 (53%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFTNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N L + + + L++P+ + +RG GRG
Sbjct: 285 ALNGKVL----DGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 163/322 (50%), Gaps = 36/322 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + +++ + V ++ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMRKV-TEGVVEVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + N G + +++ K +D+ FV F+ + AV K
Sbjct: 233 LYVRNLMLSTSEETIEREFNNIKPGAVERVK--------KIRDYAFVHFNNREDAVGAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLP 493
++N G+ + + + L++P+ + +RG GRGT SLP
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT--------------SLP 324
Query: 494 GRSARGIGSRLPPASVKRPVPV 515
G G PA+ PV
Sbjct: 325 GEYTYTFGHVYDPATAYLGAPV 346
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 152/282 (53%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEVIEKEFNNIKPGAVERVK--------KIRDYAFVHFTNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 320
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV +DL+++ VGEV EVR+M ++G+AF+ F T A +AV E
Sbjct: 112 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKAVKE 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNN 316
L N + GK+ V+ SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N
Sbjct: 170 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANR 229
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKT 375
NRG+ F+E+ + + A + R + F +D A VS+AD + +QVK+
Sbjct: 230 ---NRGYGFVEYYNHACA--EYARQEMSSPTFKLDSNAPTVSWADPKNNDSAST-SQVKS 283
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAK 433
V+V LP + + +++ L +++GEI K+ L PS D +GFV F A+ +
Sbjct: 284 VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---R 337
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
++ N E E D + + L++P
Sbjct: 338 ALQNTERYELDGQV-LDCSLAKP 359
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV +DL+++ VGEV EVR+M ++G+AF+ F T A +AV E
Sbjct: 112 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKAVKE 169
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNN 316
L N + GK+ V+ SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N
Sbjct: 170 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANR 229
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKT 375
NRG+ F+E+ + + A + R + F +D A VS+AD + +QVK+
Sbjct: 230 ---NRGYGFVEYYNHACA--EYARQEMSSPTFKLDSNAPTVSWADPKNNDSAST-SQVKS 283
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAK 433
V+V LP + + +++ L +++GEI K+ L PS D +GFV F A+ +
Sbjct: 284 VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---R 337
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
++ N E E D + + L++P
Sbjct: 338 ALQNTERYELDGQV-LDCSLAKP 359
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 71 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAVRE 129
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 130 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 188
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 189 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 246
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 247 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 300
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 301 NGTEL-EGSC---LEVTLAKPVDK 320
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 160 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 219
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 220 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 278
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 279 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 302
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 303 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 354
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 355 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 382
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 153/292 (52%), Gaps = 25/292 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF ++G++ E+RLMM+ + N+G+AF+ + T E ++AV +
Sbjct: 59 EVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMD-FSGSNRGYAFVMYTTREDGKKAVKQ 117
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV PS D+ LF+G I K +E + ++ + V D+ + N+
Sbjct: 118 LNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSIND 176
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K + R L+G V +A+ D +++M VK
Sbjct: 177 KAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWG--HQIMVDWAEPEQDVDEDVMRGVKI 234
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ + + + G + +++ K +DF F+ F T + A+
Sbjct: 235 LYVRNLMLHTTEETIAKEFNAFKEGSVERVK--------KLRDFAFIHFFTREDALNAMN 286
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWG 485
++++ L + AK+ L++P+ +G + + G G G +G +G
Sbjct: 287 AMDDPLL----DGAKIEVVLAKPVDKG-----NYVRYTPGAGRGYVQQGLYG 329
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKNEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 145/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + +++ + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F D A+ K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNRDDAIEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N G+ + + + L++P+ +
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDK 306
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 143/263 (54%), Gaps = 19/263 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ DV +DL+++ VGEV EVR+M ++G+AF+ F T A +AV E
Sbjct: 124 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKAVKE 181
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNN 316
L N + GK+ V+ SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N
Sbjct: 182 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANR 241
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKT 375
NRG+ F+E+ + + A + R + F +D A VS+AD + +QVK+
Sbjct: 242 ---NRGYGFVEYYNHACA--EYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKS 295
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAK 433
V+V LP + + +++ L +++GEI K+ L PS D +GFV F A+ +
Sbjct: 296 VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---R 349
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
++ N E E D + + L++P
Sbjct: 350 ALQNTERYELDGQV-LDCSLAKP 371
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 160 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 219
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 220 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 278
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 279 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 302
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 303 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 354
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 355 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 382
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 145/266 (54%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + +++ + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F D A+ K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNRDDAIEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N G+ + + + L++P+ +
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDK 306
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 141/277 (50%), Gaps = 43/277 (15%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV-- 255
EV+VGG+ +D +DL+ VGEVTEVR+M + +NKGFAF+ F VE A +A+
Sbjct: 56 EVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEE 115
Query: 256 ---------------TELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY 300
++ K+ LF+GN+ ++W +E +K+ +
Sbjct: 116 LNNTEFKGRKIKCSTSQAKH-----------------RLFIGNVPRSWGEEDIKKVVTEI 158
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFA 359
G V + LV+D N NRGFAF+++ + + A + R + + F +D A VS+A
Sbjct: 159 G-PGVTAVELVKDMKNSSNNRGFAFIDYYNHACA--EYSRQKMMNPKFKLDNNAPTVSWA 215
Query: 360 DSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGF 419
D + +QVK V+V LP + +D++++L +++G+ITK+ L ++ GF
Sbjct: 216 DP-KNADSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGF 274
Query: 420 VTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
V F +A+ K++ N E E D + + L++P
Sbjct: 275 VHFAERSSAM---KALKNTEKYEIDGQV-LECSLAKP 307
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 151/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPICEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSLVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNVKPGAVERVK--------KIRDYAFVHFSHREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GR T
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRAT 321
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 153/292 (52%), Gaps = 25/292 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF ++G++ E+RLMM+ + N+G+AF+ + T E ++AV +
Sbjct: 59 EVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMD-FSGSNRGYAFVMYTTREDGKKAVKQ 117
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV PS D+ LF+G I K +E + ++ + V D+ + N+
Sbjct: 118 LNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSIND 176
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K + R L+G V +A+ D +++M VK
Sbjct: 177 KAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWG--HQIMVDWAEPEQDVDEDVMRGVKI 234
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ + + + G + +++ K +DF F+ F T + A+
Sbjct: 235 LYVRNLMLHTTEETIAKEFNAFKEGSVERVK--------KLRDFAFIHFFTREDALNAMN 286
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWG 485
++++ L + AK+ L++P+ +G + + G G G +G +G
Sbjct: 287 AMDDPLL----DGAKIEVVLAKPVDKG-----NYVRYTPGAGRGYVQQGLYG 329
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 149/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 77 EVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMD-FDGKNRGYAFVTYTHKHEAKRAVRE 135
Query: 258 LKN-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N V G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 136 LNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKV-TEGVLDVIVYASAAD 194
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 195 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 252
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + + AV S+
Sbjct: 253 LYVRNLMIETTEEAIK---KSFGQFNPGCVER---VKKIRDYAFVHFVSREDAVRAMNSL 306
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + + L++P+ Q + + A++G
Sbjct: 307 NGTEL-EG---SCLEVTLAKPVDKEQYTRYQKAAKG 338
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRTYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + + L++P+ +
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDK 321
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 150/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N L + + + L++P+ + +RG GRGT
Sbjct: 285 ALNGKVL----DGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 151/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 150/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N L + + + L++P+ + +RG GRGT
Sbjct: 285 ALNGKVL----DGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 131/246 (53%), Gaps = 14/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E++VG + D+ D L +F++ G++ + RLMM+P T ++G+AF+ + E A A +
Sbjct: 226 EIYVGHIPTDLFEDTLVPLFAESGKIWDFRLMMDPMTGASRGYAFVTYCEKEHATNAAKK 285
Query: 258 LK-NPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ + GK V S + LFLGNI KT +K+ + E+LK + + V D+ + +N
Sbjct: 286 FDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKSHA-EGVTDVIVYSVPDN 344
Query: 317 EGM-NRGFAFLEFSSRSDAMDAFKRLQKRDVL-FGVDRPAKVSFADSFIDPGDEIMAQVK 374
E + NRGF F++F A D +++ + + F D V +A+ +P ++ M++VK
Sbjct: 345 EKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEQQEEPDEDTMSKVK 402
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+++ + + E+++ EL K Y + +++ K KD+ F+ F+ D + +
Sbjct: 403 VLYIRNIKEAVTEEKLTELFKEYASLDRVK--------KVKDYAFIHFNERDDCMKAMEQ 454
Query: 435 INNAEL 440
N EL
Sbjct: 455 WNGKEL 460
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 157/309 (50%), Gaps = 37/309 (11%)
Query: 153 VPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDD 212
V + G +++V G+ A E++ H EV+VGG+ DV +D
Sbjct: 82 VSKTKGVHQKDVTEKGKHA---ELLALPPHGS-------------EVYVGGISSDVSSED 125
Query: 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
L+++ VGEV EVR+M ++G+AF+ F T A + V EL N + GK+ V+
Sbjct: 126 LKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSS 183
Query: 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNNEGMNRGFAFLEFSSR 331
SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N NRG+ F+E+ +
Sbjct: 184 SQAKNKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANR---NRGYGFVEYYNH 240
Query: 332 SDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEI-MAQVKTVFVDGLPASWDEDR 389
+ A + R + F +D A VS+AD D + +QVK+V+V LP + + +
Sbjct: 241 ACA--EYARQEMSSPTFKLDSNAPTVSWADP--KNNDSVSTSQVKSVYVKNLPKNVTQAQ 296
Query: 390 VRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447
++ L +++GEI K+ L PS D +GFV F A+ +++ N E E D +
Sbjct: 297 LKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---RALQNTERYELDGQV 350
Query: 448 KVRARLSRP 456
+ L++P
Sbjct: 351 -LDCSLAKP 358
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 151/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 65 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 123
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 124 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 182
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 183 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 240
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 241 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 292
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 293 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 329
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 131/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NR F FLE+ A AQVK +
Sbjct: 282 KKKNRSFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K + + E++ + V ++ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYSRYQKAAKG 333
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +D+ D+L + + G++ EVR+MM+ N+G+AF+ F+T ++A+ A+ +
Sbjct: 57 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSTKQEAKNAMKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K L R L+G P V +A+ ++ ++ MA VK
Sbjct: 175 KAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMATVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ + K + I + R K +D+ FV F + A+ ++
Sbjct: 233 LYVRNLMLPTTEETIE---KEFNSIKPGAVER---VKKIRDYAFVHFSQREDAINAMNAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N G+ + + + L++P+ +
Sbjct: 287 N----GKVIDGSPIEVTLAKPVDK 306
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +D+ D+L + + G++ EVR+MM+ N+G+AF+ F+T ++A+ A+ +
Sbjct: 57 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSTKQEAKNAMKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K L R L+G P V +A+ ++ ++ MA VK
Sbjct: 175 KAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMATVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ + K + I + R K +D+ FV F + A+ ++
Sbjct: 233 LYVRNLMLPTTEETIE---KEFNSIKPGAVER---VKKIRDYAFVHFSQREDAINAMNAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N G+ + + + L++P+ +
Sbjct: 287 N----GKVIDGSPIEVTLAKPVDK 306
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 153/292 (52%), Gaps = 25/292 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF ++G++ E+RLMM+ + N+G+AF+ + T E ++AV +
Sbjct: 59 EVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMD-FSGSNRGYAFVMYTTREDGKKAVKQ 117
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV PS D+ LF+G I K +E + ++ + V D+ + N+
Sbjct: 118 LNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKV-TEQVVDVIVYPSIND 176
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K + R L+G V +A+ D +++M VK
Sbjct: 177 KAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWG--HQIMVDWAEPEQDVDEDVMRGVKI 234
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ + + + G + +++ K +DF F+ F T + A+
Sbjct: 235 LYVRNLMLHTTEETIAKEFNAFKEGSVERVK--------KLRDFAFIHFFTREDALNAMN 286
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWG 485
++++ L + AK+ L++P+ +G + + G G G +G +G
Sbjct: 287 AMDDPLL----DGAKIEVVLAKPVDKG-----NYVRYTPGAGRGYVQQGLYG 329
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 151/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 50 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 108
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 109 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 167
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 168 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 225
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 226 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 277
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 278 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 314
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 151/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 65 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 123
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 124 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 182
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 183 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 240
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 241 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 292
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 293 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 329
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 149/283 (52%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNRKDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N L + + + L++P+ + +RG GRGT
Sbjct: 285 ALNGKVL----DGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K + + E++ + V ++ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYSRYQKAAKG 333
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 149/283 (52%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNRKDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N L + + + L++P+ + +RG GRGT
Sbjct: 285 ALNGKVL----DGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 151/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 65 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 123
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 124 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 182
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 183 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 240
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 241 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 292
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 293 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 329
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 147/267 (55%), Gaps = 22/267 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG L +D+ D+L VF +G++ EVRLMM+ + N+G+AF+ + E A++AV +
Sbjct: 58 EVFVGKLPRDLYEDELVPVFETIGKIYEVRLMMD-FSGSNRGYAFVMYTNKEDAKRAVKQ 116
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV PS D+ LF+G I K K + E++ + V ++ + + +
Sbjct: 117 LNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKV-TEGVVNVIVYPSATD 175
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ + +E+M +VK
Sbjct: 176 KTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWG--HQIAVDWAEPEPEVDEEVMRKVKV 233
Query: 376 VFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
++V L + ED +++ + GE +T+++ K +D+ FV + T + A+
Sbjct: 234 LYVRNLMVTTTEDDIKQAFE-VGEEETVTRVK--------KIRDYAFVHYKTREDAIAAM 284
Query: 433 KSINNAELGEGDNKAKVRARLSRPLQR 459
++N + L EG AK+ ++P+ R
Sbjct: 285 TAMNGSTL-EG---AKLEVTFAKPVDR 307
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 147/281 (52%), Gaps = 25/281 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFIGGIPKTKKREEILSEVKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + N K E+ D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEIIEREFNN----IKPEIW---------DYAFVHFSKREDAVEAMKAL 279
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GRGT
Sbjct: 280 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 314
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 131/271 (48%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQ + +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQARLL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N
Sbjct: 306 FVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+L EG+N V A+ P Q+ K + A R
Sbjct: 358 GKDL-EGENIEIVFAK--PPDQKRKERKAQR 385
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 150/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 40 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 98
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 99 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 157
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 158 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 215
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F AV K
Sbjct: 216 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNRKDAVEAMK 267
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 268 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 304
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 153/283 (54%), Gaps = 23/283 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++AR A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFL-GNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSN 315
L N I NG+ GV S D+ LF+ G+ KT +E + ++K D V D+ + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGDPPKTKKREEILAEMKKV-TDGVVDVIVYPSAA 174
Query: 316 NEGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVK 232
Query: 375 TVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
++V L S E+ + + N G + +++ K +D+ FV F+ + AV
Sbjct: 233 ILYVRNLMLSTTEETIEKEFNNIKQGAVERVK--------KIRDYAFVHFNKREDAVDAM 284
Query: 433 KSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
K++N G+ + + + L++P+ + +RG GRG
Sbjct: 285 KALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRG 321
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K + + E++ + V ++ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ +++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEETIK---RSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYSRYQKAAKG 333
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 128/245 (52%), Gaps = 5/245 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV++GG+ D DL+ +GEVTEVR+M + KG+AF+ F + + A +A+
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N GK+ + +Q LFLGN+ + W + +K+ G V+ + L ++ N
Sbjct: 153 LNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNM 211
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFAD-SFIDPGDEIMAQVKT 375
G NRGFAF+E+ + + A + + + + F +D A VS+A+ GD +QVK
Sbjct: 212 GRNRGFAFIEYYNHACA--EYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKA 269
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+++ LP ++R++ L +++G+I K+ + P + +GFV + + + K+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 436 NNAEL 440
E+
Sbjct: 330 ERYEI 334
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 14/240 (5%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+A + F E A++AV
Sbjct: 226 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYALITFCGKEAAQEAVKLC 285
Query: 259 KNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++
Sbjct: 286 DSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDK 344
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
NR F FLE+ A A +RL V ++G V +AD +P E+MA+VK +
Sbjct: 345 KKNR-FCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVL 401
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 402 FVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 453
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 143/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +D+ D+L + + G++ EVR+MM+ N+G+AF+ F+ ++AR A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEARAAMKQ 116
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 117 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TDGVVDVIVYPSAAD 175
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HAIAVDWAEPEVEVDEDTMATVKI 233
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ + + + G + +++ K +D+ FV F + A+ K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKPGAVERVK--------KIRDYAFVHFTQREDAINAMK 285
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N G+ + + + L++P+ +
Sbjct: 286 ALN----GKVVDGSPIEVTLAKPVDK 307
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 143/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +D+ D+L + + G++ EVR+MM+ N+G+AF+ F+ ++AR A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEARAAMKQ 116
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K D V D+ + + +
Sbjct: 117 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TDGVVDVIVYPSAAD 175
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HAIAVDWAEPEVEVDEDTMATVKI 233
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ + + + G + +++ K +D+ FV F + A+ K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKPGAVERVK--------KIRDYAFVHFTQREDAINAMK 285
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
++N G+ + + + L++P+ +
Sbjct: 286 ALN----GKVVDGSPIEVTLAKPVDK 307
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 151/296 (51%), Gaps = 35/296 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK--------------RDVLFGVDRPAKVSFADSF 362
+ NRGFAF+E+ S A A ++L R L+G P V +A+
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWG--HPIAVDWAEPE 232
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFV 420
++ ++ M+ VK ++V L S E+ + + N G + +++ K +D+ FV
Sbjct: 233 VEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFV 284
Query: 421 TFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
F + AV K++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 HFSNREDAVEAMKALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 334
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 149/283 (52%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +D+ D+L + + G++ EVR+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEAKTAMKQ 116
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I K ++ + ++K D V D+ + + +
Sbjct: 117 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKV-TDGVVDVIVYPSAAD 175
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ D+ MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGY--PIAVDWAEPEVEVDDDTMATVKI 233
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ + + G + +++ K +D+ FV F + A+
Sbjct: 234 LYVRNLMLQTTEETIEREFNSLKPGAVERVK--------KIRDYAFVHFCQREDAINAMN 285
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N +L EG + + L++P+ + +RG GRG+
Sbjct: 286 ALNG-KLVEG---SPIEVTLAKPVDKDSYVRYTRGT--GGRGS 322
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 69/313 (22%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF G + KD+ D+L +F G + ++RLMM+P + N+G+AF+ F T E ++AV E
Sbjct: 166 EVFCGKIPKDMYEDELIPLFESCGTIWDLRLMMDPMSGANRGYAFVTFTTREATQRAVQE 225
Query: 258 --LKNPVINGKQ-----------------------------------CGVTPSQDSDT-- 278
+ P+ G + C VTP + +
Sbjct: 226 HVINIPIDFGHKYAECDVATARRPAPGAAPRVSMAGVPTVITDLVYMCNVTPLDNHEIKP 285
Query: 279 --------------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
LF+GNI K+ KE + E+ VE + + +++ NRGF
Sbjct: 286 GKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVE-VIIYSSPDDKKKNRGFC 344
Query: 325 FLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ S A A +RL R ++G D V +AD +P ++ M++VK ++V L
Sbjct: 345 FLEYESHKAASLAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKVLYVRNLTQ 402
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
E+ ++E + YG + +++ K KD+ FV F+ D AV + I+ ELG
Sbjct: 403 EITEEALKEEFERYGNVERVK--------KIKDYAFVHFEDRDCAVKAMQEIDGKELG-- 452
Query: 444 DNKAKVRARLSRP 456
A++ L++P
Sbjct: 453 --GARLEVSLAKP 463
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 31/191 (16%)
Query: 176 MVDAEEHDHHEMFQERRKRKEFEV-----FVGGLDKDVVGDDLRKVFSQVGE-VTEVRLM 229
M + D+HE+ + R + V FVG + K +++ + F ++ + EV +
Sbjct: 272 MCNVTPLDNHEIKPGKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIY 331
Query: 230 MNPQ-TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT-----PSQDSD------ 277
+P KKN+GF FL + + + A A L I C + P ++ D
Sbjct: 332 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 391
Query: 278 --TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
L++ N+ + T+EALKE+ + YG NVE + ++D +AF+ F R A+
Sbjct: 392 VKVLYVRNLTQEITEEALKEEFERYG--NVERVKKIKD---------YAFVHFEDRDCAV 440
Query: 336 DAFKRLQKRDV 346
A + + +++
Sbjct: 441 KAMQEIDGKEL 451
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 133/266 (50%), Gaps = 17/266 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +FSQV + + RLMM+ T +GFAF+ + V A++AV +
Sbjct: 32 EIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMD-FTGNTRGFAFVTYYNVWDAQKAVLK 90
Query: 258 LKNPVINGK----QCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
I Q V S D+ LF GN+ K T++ ++ +LK + +D + + +
Sbjct: 91 FNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKF-IDGIVKVITYPE 149
Query: 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA--DSFIDPGDEIMA 371
N NRGFAF+EF S + A A ++L V+ R V +A + +DP ++M
Sbjct: 150 RNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVDP--DVMT 207
Query: 372 QVKTVFVDGLPASWDEDRVRELL-KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
QVK +++ +P W DR++ + K GEI IE KR ++ F+ FD A
Sbjct: 208 QVKVLYMKNVPTFWTLDRLKTYISKTVGEIF-IERI-----YKRDNYAFIHFDERSFAER 261
Query: 431 CAKSINNAELGEGDNKAKVRARLSRP 456
K ++ N ++ +RP
Sbjct: 262 ALKIFDSVSQYLSFNGKQIEVEWARP 287
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 11/233 (4%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L D+ D+L +FSQ G + +RLMM+ + +G+ F+ + T E A AV
Sbjct: 407 EIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAHAAVAA 465
Query: 258 LKNPVINGK-QCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I K + V+ S D+ LF+GNI + T ++ L+ Y V+ + D+ + N
Sbjct: 466 FNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKY-VEGIVDIIFYHEPYN 524
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ +NRGF F+EF S A A ++L ++ ++G +P V +A+ +I+ QV
Sbjct: 525 DSINRGFIFVEFESHRLAAIARRQLSPGNLTIWG--KPIFVDWAEPLPVVNPQILKQVTK 582
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
+++ LP + + ++ L + + I + K +F FV F A
Sbjct: 583 LYLSNLPMTLSSEELKSFLCELLDPSHI-----IKVHKINNFAFVHFTLRKYA 630
>gi|148909314|gb|ABR17756.1| unknown [Picea sitchensis]
Length = 344
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 83/121 (68%), Gaps = 6/121 (4%)
Query: 359 ADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFG 418
A DP +++M QVK+VFVDGL +W+E++V+E +GEI ++ LA N+ SAKRKDFG
Sbjct: 33 AQPLNDPDEDVMEQVKSVFVDGLQPTWNEEKVKEHFGKFGEIERVVLACNIQSAKRKDFG 92
Query: 419 FVTFDTHDAAVTCAKSIN-NAELGEGDNKAKVRARLSRP-----LQRGKGKHASRGDFRS 472
FV + T +AA+ C ++ + + EL +GD+K KV+ L++P L++GK K ++GD +
Sbjct: 93 FVNYTTREAAIACIEAFSKDDELIDGDSKVKVKVSLAKPSHKGKLRKGKSKGTNKGDLKG 152
Query: 473 G 473
G
Sbjct: 153 G 153
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K + + E++ + V ++ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYSRYQKAAKG 333
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 49/271 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F + E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQEAVKL 222
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GKQ GV S ++ LF+G+I K+ TKE + E+ + + D+ L +
Sbjct: 223 CNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYLQPQD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KSKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L S E+ + + YG + +++ K KD+ F+ F+ D AV + +N
Sbjct: 306 FVRNLANSVTEEILEKSFSEYGNLERVK--------KLKDYAFIHFEERDGAVKALEEMN 357
Query: 437 NAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
EL EG+ V A+ P Q+ K + A R
Sbjct: 358 GKEL-EGEPIEIVFAK--PPDQKRKERKAQR 385
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 140/264 (53%), Gaps = 15/264 (5%)
Query: 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQA 254
K EVFVG L +DV +L VF +VG + E+R+MM+ N+G+AF+ F EQA++A
Sbjct: 82 KGCEVFVGKLPRDVTEQELVPVFERVGRIYEMRMMMD-FNGSNRGYAFVTFCDKEQAKRA 140
Query: 255 VTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
+L I G+ GV S D+ L++ I + ++E ++ ++ D V D+ L
Sbjct: 141 CQQLNGFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARL-TDGVVDVILYPS 199
Query: 314 SNNEGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
+ ++ NRGFAF+E+ S RS AM K R L+G + V +A+ D +E MAQ
Sbjct: 200 AMDKSKNRGFAFIEYESHRSAAMARRKLAPNRLTLWGNE--ITVDWAEPERDVDEETMAQ 257
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
VK ++V L E+ +RE+++ +E + K +D+ FV F + A+
Sbjct: 258 VKKLYVRNLMMHTTEEHLREVVEAISGTGTVERVK-----KIRDYAFVHFSRREDAIRVQ 312
Query: 433 KSINNAELGEGDNKAKVRARLSRP 456
+++N +L + + V +L++P
Sbjct: 313 EALNGQDL----DGSVVEVKLAKP 332
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 131/246 (53%), Gaps = 14/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV-T 256
E++VG + DV D L +F + G++ ++RLMM+P + ++G+AF+ + E A A T
Sbjct: 201 EIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKT 260
Query: 257 ELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ + GK V S + LF+GNI KT +K+ + E+LK + + V D+ + +N
Sbjct: 261 YDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHA-EGVVDVIVYSVPDN 319
Query: 317 EGM-NRGFAFLEFSSRSDAMDAFKRLQKRDVL-FGVDRPAKVSFADSFIDPGDEIMAQVK 374
E + NRGF F++F A D +++ + + F D V +A+ +P ++ M++VK
Sbjct: 320 EKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQEEPDEDTMSKVK 377
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+++ + + E+++ EL K Y + +++ K KD+ F+ F+ D + +
Sbjct: 378 VLYIRNIKEAVTEEKLNELFKEYASLDRVK--------KVKDYAFIHFNERDDCLKAMEE 429
Query: 435 INNAEL 440
N EL
Sbjct: 430 WNGKEL 435
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 149/281 (53%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 133/243 (54%), Gaps = 16/243 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SIN 436
++N
Sbjct: 285 ALN 287
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 123/244 (50%), Gaps = 26/244 (10%)
Query: 210 GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269
G + KVFS GE+ EVR MM Q K+KG+ F+RF T E A +A+ E ++ GK+ G
Sbjct: 190 GVWVNKVFSTCGEIIEVR-MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIG 248
Query: 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE--DLTLVEDSNNEGM-----NRG 322
V PS D TLF GN+ K W+ + +K+ +V DL + S + + NRG
Sbjct: 249 VVPSTDQTTLFFGNLPKDWSPDEF-DKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRG 307
Query: 323 FAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS-FIDPGDEIMAQVKTVFVDGL 381
FAF++FSS + A A + K D L G V +A+ IDP E +A++ FV L
Sbjct: 308 FAFVKFSSHAAAARAHRMGSKSDFLLGDSWHPVVEWAEEPEIDP--EELAKITIAFVGNL 365
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD----------THDAAVTC 431
P +ED +++L +G++ K+ L++ S GFV F H + TC
Sbjct: 366 PKDANEDYLKKLFGPFGKVEKVLLSKKGQSP----VGFVHFAKRSCLLMLHVLHPGSCTC 421
Query: 432 AKSI 435
+
Sbjct: 422 VHPL 425
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 149/281 (53%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 142/264 (53%), Gaps = 18/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +D+ D+L + + G++ EVR+MM+ + N+G+AF+ F+ ++A+ A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGQIYEVRMMMD-FSGNNRGYAFVTFSNKQEAKAAMKQ 116
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I KT +E + +++ + V D+ + + +
Sbjct: 117 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKV-TEGVVDVIVYPSAAD 175
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HAIAVDWAEPEVEVDEDTMATVKI 233
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ + + + E+ +++ K +D+ FV F + A+ K +
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKEVERVK--------KIRDYAFVHFAQREDAIHAMKEL 285
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N G+ + + + L++P+ +
Sbjct: 286 N----GKVVDGSPIEVTLAKPVDK 305
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 146/273 (53%), Gaps = 16/273 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRG 468
N G+ + + + L++P+ + +RG
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRG 315
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 133/266 (50%), Gaps = 17/266 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +FSQV + + RLMM+ T +GFAF+ + V A++AV +
Sbjct: 32 EIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMD-FTGNTRGFAFVTYYNVWDAQKAVLK 90
Query: 258 LKNPVINGK----QCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
I Q V S D+ LF GN+ K T++ ++ +LK + +D + + +
Sbjct: 91 FNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKF-IDGIVKVITYPE 149
Query: 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA--DSFIDPGDEIMA 371
N NRGFAF+EF S + A A ++L V+ R V +A + +DP ++M
Sbjct: 150 RNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVDP--DVMT 207
Query: 372 QVKTVFVDGLPASWDEDRVRELL-KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
QVK +++ +P W DR++ + K GEI IE KR ++ F+ FD A
Sbjct: 208 QVKVLYMKNVPTFWTLDRLKTYISKTVGEIF-IE-----RIYKRDNYAFIHFDERSFAER 261
Query: 431 CAKSINNAELGEGDNKAKVRARLSRP 456
K ++ N ++ +RP
Sbjct: 262 ALKIFDSVSQYLSFNGKQIEVEWARP 287
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 131/246 (53%), Gaps = 14/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E++VG + D+ D L +F++ G+V ++RLMM+P T ++G+AF+ + E A A +
Sbjct: 210 EIYVGHIPNDIFEDKLLPLFAESGKVYDLRLMMDPMTGASRGYAFVTYCNKEDAAAAAKK 269
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
++ GK V S + LFLGNI KT +K+ + E+LK + + V D+ + +N
Sbjct: 270 FDGHELSPGKTLKVNISIANTRLFLGNIPKTKSKDEILEELKTHA-EGVTDVIVYSVPDN 328
Query: 317 EGM-NRGFAFLEFSSRSDAMDAFKRLQKRDVL-FGVDRPAKVSFADSFIDPGDEIMAQVK 374
E + NRGF F++F A D +++ + + F D V +A+ +P + M++VK
Sbjct: 329 EKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQDEPDADTMSKVK 386
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+++ + + E+++ EL K Y + +++ K KD+ F+ F+ D V +
Sbjct: 387 VLYIRNIKEAVTEEKLTELFKEYASLDRVK--------KVKDYAFIHFNERDDCVKAMEE 438
Query: 435 INNAEL 440
N +L
Sbjct: 439 WNGKDL 444
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 5/178 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQV 373
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+V
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKV 337
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
+F+G I + ++ L + G + DL L+ D G+NRG+AF+ F ++ A +A
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAG--PIWDLRLMMDPLT-GLNRGYAFVTFCTKEAAQEAV 220
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
K ++ G +S A++ +FV +P S ++++ E
Sbjct: 221 KLYNNHEIRSGKHIGVCISVANN-------------RLFVGSIPKSKTKEQILEEFSKVT 267
Query: 399 EITKIELARNMPSAKRKD--FGFVTFDTHDAA 428
E + + P K+K+ F F+ ++ H A
Sbjct: 268 EGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V DL +VFS +G+V+ +R+ + +K++ G+A++ F + +A+ EL
Sbjct: 49 LYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALEEL 108
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GK C + SQ S +F+ N+ + L + +G + +
Sbjct: 109 NYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFG--KILSCKI 166
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
D N G ++GF F+ + A A + L +V G DR +K+
Sbjct: 167 ATDEN--GNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMR--- 221
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
E++A V+V + +WDED++RE +G I+ I L+++ S K + FGFV
Sbjct: 222 -------ELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKD-ESGKSRGFGFV 273
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H+ AV + +NN ++
Sbjct: 274 NFEKHEDAVKAVEELNNKDI 293
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 30/262 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ L + L FS G++ ++ + + +KGF F+ + E A+ A+ +
Sbjct: 137 IFIKNLHPAIDNKTLHDTFSAFGKILSCKIATD-ENGNSKGFGFVHYEESESAKAAIENV 195
Query: 259 KNPVINGKQCGVTPS--------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N + V P + +++ NI W ++ L+E +G
Sbjct: 196 NGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFGT-- 253
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVS---- 357
+ + L +D + G +RGF F+ F DA+ A + L +D+ V R K S
Sbjct: 254 ISSIFLSKDES--GKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERME 311
Query: 358 -FADSFIDPGDEIMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
+ E + + + +FV L S D+ ++ E K YG IT ++ + + K
Sbjct: 312 SLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLD-DAGKS 370
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV + + + A ++
Sbjct: 371 KGFGFVCYSSPEEATKAITEMH 392
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V ++ + D LR+ FS G ++ + L + ++ K++GF F+ F E A +AV EL
Sbjct: 230 VYVKNINLNWDEDKLRETFSPFGTISSIFLSKD-ESGKSRGFGFVNFEKHEDAVKAVEEL 288
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
N I+G++ V +Q LF+ N+ + L+
Sbjct: 289 NNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLE 348
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ K YG + L ++ G ++GF F+ +SS +A A + +R V +P
Sbjct: 349 EEFKPYGTITSAKVML----DDAGKSKGFGFVCYSSPEEATKAITEMHQRMV---AGKPL 401
Query: 355 KVSFA 359
V+ A
Sbjct: 402 YVALA 406
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 167 AGEEAERPEMVDAEEHDHHEMFQER-RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
G ++ E +++ +H + QE+ K + + +FV LD + L + F G +T
Sbjct: 300 VGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITS 359
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++M++ K+KGF F+ +++ E+A +A+TE+ ++ GK V +Q
Sbjct: 360 AKVMLD-DAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQ 407
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 22/251 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKALEEL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 181 AQDES--GASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKK-DRQSKF--- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V +P E+ REL + +G++T LAR+ S K + FGFV F H
Sbjct: 235 -EEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINH 293
Query: 426 DAAVTCAKSIN 436
+ A T +N
Sbjct: 294 EHAATAVDELN 304
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V + + ++ R++F + G+VT L + ++ K++GF F+ F E
Sbjct: 235 EEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHE 294
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A AV EL G+ V +Q
Sbjct: 295 HAATAVDELNGKDFKGQDLYVGRAQ 319
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 149/281 (53%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 148/281 (52%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+RLMM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 46/244 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P + N+G+AF+ F + E A++AV
Sbjct: 163 EIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQEAVKL 222
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 CNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLSDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 282 KKKNRGFCFLEYEDHKTA------------------------------------AQVKVL 305
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L E+ + + +G++ +++ K KD+ F+ F+ D AV + +N
Sbjct: 306 FVRNLANGVTEELLEKSFSEFGKLERVK--------KLKDYAFIHFEERDGAVKALEEMN 357
Query: 437 NAEL 440
EL
Sbjct: 358 GKEL 361
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 146/282 (51%), Gaps = 22/282 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + + G++ E+R+MM+ N+G+AF+ F + AR A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKTGKIYEMRMMMD-FNGNNRGYAFVTFTNRQDARDAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + +++ D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILAEMRKV-TDGVLDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L + E+ + + + G + +++ K +D+ FV F AV
Sbjct: 233 LYVRNLMLTTAEETIEKEFSSVKPGSVERVK--------KIRDYAFVHFRNRADAVDAMN 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRG 475
+N G+ + + + L++P+ + +RG GRG
Sbjct: 285 VLN----GKIIDGSPIEVTLAKPVDKESYVRYTRGT--GGRG 320
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 149/281 (53%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 238 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 296
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 297 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 355
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 356 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 413
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 414 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 464
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 465 SVMNGKCIDG---ASIEVTLAKPVNK 487
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 22/251 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 64 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKALEEL 123
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 181
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 182 AQDES--GASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKK-DRQSKF--- 235
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V +P ++ REL + +G++T LAR+ + K + FGFV F H
Sbjct: 236 -EEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINH 294
Query: 426 DAAVTCAKSIN 436
+ A T +N
Sbjct: 295 EHAATAVDELN 305
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V + + ++ R++F + G+VT L + T K++GF F+ F E
Sbjct: 236 EEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHE 295
Query: 250 QARQAVTEL 258
A AV EL
Sbjct: 296 HAATAVDEL 304
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 131/246 (53%), Gaps = 14/246 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV-T 256
E++VG + D+ D L +F + G++ ++RLMM+P T ++G+AF+ + E A A T
Sbjct: 219 EIYVGHIPNDIFEDTLVPLFEKSGKIWDLRLMMDPMTGASRGYAFVTYCEKEHAANAAKT 278
Query: 257 ELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ + GK V S + LFLGNI KT +K+ + E+LK + + V D+ + +N
Sbjct: 279 YDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKTHA-EGVTDVIVYSVPDN 337
Query: 317 EGM-NRGFAFLEFSSRSDAMDAFKRLQKRDVL-FGVDRPAKVSFADSFIDPGDEIMAQVK 374
+ + NRGF F++F A D +++ + + F D V +A+ +P ++ M++VK
Sbjct: 338 DKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNAD--VYVDWAEHQEEPDEDTMSKVK 395
Query: 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+++ + + E+++ E+ K Y + +++ K KD+ F+ F+ + + +
Sbjct: 396 VLYIRNIKEAVTEEKLTEIFKEYASLDRVK--------KVKDYAFIHFNEREDCMKAMEQ 447
Query: 435 INNAEL 440
N EL
Sbjct: 448 WNGKEL 453
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 140/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ ++ E K +L K +D+ FV F + AV A S+
Sbjct: 238 LYVRNLMISTTEETIK------AEFNKFKLGAVERVKKLRDYAFVHFFNREDAVA-AMSV 290
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N + +G A + L++P+ +
Sbjct: 291 MNGKCIDG---ASIEVTLAKPVNK 311
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 148/281 (52%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+RLMM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 157/309 (50%), Gaps = 37/309 (11%)
Query: 153 VPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDD 212
V + G +++V G+ A E++ H EV+VGG+ DV +D
Sbjct: 461 VSKTKGVHQKDVTEKGKHA---ELLALPPHGS-------------EVYVGGISSDVSSED 504
Query: 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
L+++ VGEV EVR+M ++G+AF+ F T A + V EL N + GK+ V+
Sbjct: 505 LKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSS 562
Query: 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNNEGMNRGFAFLEFSSR 331
SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N NRG+ F+E+ +
Sbjct: 563 SQAKNKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANR---NRGYGFVEYYNH 619
Query: 332 SDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEI-MAQVKTVFVDGLPASWDEDR 389
+ A + R + F +D A VS+AD D + +QVK+V+V LP + + +
Sbjct: 620 ACA--EYARQEMSSPTFKLDSNAPTVSWADP--KNNDSVSTSQVKSVYVKNLPKNVTQAQ 675
Query: 390 VRELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447
++ L +++GEI K+ L PS D +GFV F A+ +++ N E E D +
Sbjct: 676 LKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---RALQNTERYELDGQV 729
Query: 448 KVRARLSRP 456
+ L++P
Sbjct: 730 -LDCSLAKP 737
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 125
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 183
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 184 AQDEN--GNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKK-DRQSKF--- 237
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + E+ REL YGE+T LAR+ K + FGFV F TH
Sbjct: 238 -EEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQ-EGKSRGFGFVNFSTH 295
Query: 426 DAAVTCAKSINNAEL 440
D+A + +N E
Sbjct: 296 DSAAKAVEELNGKEF 310
Score = 45.8 bits (107), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V ++ +V ++ R++FS+ GEVT L + Q K++GF F+ F+T +
Sbjct: 238 EEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARD-QEGKSRGFGFVNFSTHD 296
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL G++ V +Q
Sbjct: 297 SAAKAVEELNGKEFRGQELYVGRAQ 321
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +D+ D+L + + G++ EVR+MM+ + N+G+AF+ F+ ++A+ A+ +
Sbjct: 58 EIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FSGNNRGYAFVTFSNKQEAKAAMKQ 116
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + +++ D V D+ + + +
Sbjct: 117 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKV-TDGVLDVIVYPSAAD 175
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ MA VK
Sbjct: 176 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HAIAVDWAEPEVEVDEDTMATVKI 233
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ + K + + + + R K +D+ FV F + A+ ++
Sbjct: 234 LYVRNLMLQTTEETIE---KEFNSLKQGAVER---VKKIRDYAFVHFTQREDAIHAMNAL 287
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N G+ + + + L++P+ +
Sbjct: 288 N----GKVVDGSPIEVTLAKPVDK 307
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 148/281 (52%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+RLMM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 42 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 100
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 101 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 159
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 160 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 217
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 218 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 271
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 272 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 306
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 147/281 (52%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+RLMM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 147/281 (52%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+RLMM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 22/251 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + ++++ G+A++ + T +A+ EL
Sbjct: 63 LYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKALEEL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 181 AQDES--GASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKK-DRQSKF--- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V +P E+ REL + +G++T LAR+ + K + FGFV F H
Sbjct: 235 -EEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINH 293
Query: 426 DAAVTCAKSIN 436
+ A T +N
Sbjct: 294 EHAATAVDELN 304
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V + + ++ R++F + G+VT L + +T K++GF F+ F E
Sbjct: 235 EEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHE 294
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A AV EL G+ V +Q
Sbjct: 295 HAATAVDELNGKDFKGQDLYVGRAQ 319
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 140/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ ++ E K +L K +D+ FV F + AV A S+
Sbjct: 238 LYVRNLMISTTEETIK------AEFNKFKLGAVERVKKLRDYAFVHFFNREDAVA-AMSV 290
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N + +G A + L++P+ +
Sbjct: 291 MNGKCIDG---ASIEVTLAKPVNK 311
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 144/278 (51%), Gaps = 20/278 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L VF VG + E+RLMM+ + N+G+AF+ + E A++A+ +
Sbjct: 76 EIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMMD-FSGNNRGYAFVMYTNKEDAKKAIKQ 134
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K ++ + +++ + V D+ + + +
Sbjct: 135 LNNYEIRKGRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKV-TEGVVDVIVYPSATD 193
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + R+ AM K + R L+G V +A+ + ++IM VK
Sbjct: 194 KTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWG--HQIAVDWAEPEQEVDEDIMKTVKV 251
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L + E+ + + + G + +++ K +D+ FV F T + A+
Sbjct: 252 LYVRNLMLNTTEETIEKEFNSLKEGSVERVK--------KIRDYAFVHFVTREDALYALN 303
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFR 471
++N G + + V L++P+ R +RG R
Sbjct: 304 AMN----GHNVDGSVVEVVLAKPVDRENYVRYTRGGAR 337
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S ED ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTAEDTIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 26/269 (9%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E+RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFGRAGKIYELRLMME-FSGENRGYAFVMYTTKEEAQLAIKI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + ++K + V D+ + ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKDKKKEEILNEMKKV-TEGVVDVIVYPNATD 179
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP----GDEIMAQ 372
+ NRGFAF+E+ S A A +RL + G +P + + DP +E M +
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRL-----IPGTFQPWGHTIQVDWADPEKIVDEETMQR 234
Query: 373 VKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
VK ++V L S ED+++ + G + +++ K +D+ FV F + AV
Sbjct: 235 VKVLYVRNLMISTTEDKIKAEFNKFKPGVVERVK--------KLRDYAFVHFFHREDAVA 286
Query: 431 CAKSINNAELGEGDNKAKVRARLSRPLQR 459
A S+ N + +G A + L++P+ +
Sbjct: 287 -AMSVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 147/281 (52%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+RLMM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F D AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNRDDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 156/308 (50%), Gaps = 35/308 (11%)
Query: 153 VPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDD 212
V + G +++V G+ A E++ H EV+VGG+ DV +D
Sbjct: 492 VSKTKGVHQKDVTEKGKHA---ELLALPPHGS-------------EVYVGGISSDVSSED 535
Query: 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
L+++ VGEV EVR+M ++G+AF+ F T A + V EL N + GK+ V+
Sbjct: 536 LKRLCEPVGEVVEVRMMRG--KDDSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSS 593
Query: 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNNEGMNRGFAFLEFSSR 331
SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N NRG+ F+E+ +
Sbjct: 594 SQAKNKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANR---NRGYGFVEYYNH 650
Query: 332 SDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
+ A + R + F +D A VS+AD + +QVK+V+V LP + + ++
Sbjct: 651 ACA--EYARQEMSSPTFKLDSNAPTVSWADP-KNNDSASTSQVKSVYVKNLPKNVTQAQL 707
Query: 391 RELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448
+ L +++GEI K+ L PS D +GFV F A+ +++ N E E D +
Sbjct: 708 KRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---RALQNTERYELDGQV- 760
Query: 449 VRARLSRP 456
+ L++P
Sbjct: 761 LDCSLAKP 768
>gi|255563882|ref|XP_002522941.1| adhesion regulating molecule, putative [Ricinus communis]
gi|223537835|gb|EEF39452.1| adhesion regulating molecule, putative [Ricinus communis]
Length = 557
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 67/97 (69%), Gaps = 23/97 (23%)
Query: 166 NAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
+AGEEA+ +MV+AEE +HH +F+ERRKRKEFEVFVGGLDKD DDLRKVF++VG
Sbjct: 178 HAGEEADHAQMVNAEEEEHHGVFKERRKRKEFEVFVGGLDKDATEDDLRKVFTRVG---- 233
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV 262
FATVEQA++AVTELKNPV
Sbjct: 234 -------------------FATVEQAKKAVTELKNPV 251
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
SI N + +G A + L++P+ +
Sbjct: 289 SIMNGKCIDG---ASIEVTLAKPVNK 311
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 43 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 101
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 102 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 160
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 161 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 218
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 219 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 269
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 270 SVMNGKCIDG---ASIEVTLAKPVNK 292
>gi|224068117|ref|XP_002302667.1| predicted protein [Populus trichocarpa]
gi|222844393|gb|EEE81940.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+GGL KDV+ D+LR + +GE+ E+RLM + T ++KGFAF+ F + E AR+A E
Sbjct: 76 EVFIGGLPKDVIEDELRDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVARKATEE 135
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L++ GK + S+ + LF+GN+ K T++ ++ ++ G +E L L++D
Sbjct: 136 LRSKDYKGKTLRCSISETKNRLFIGNVPKNLTEDEFRKIIEEVG-PGMEVLELIKDPQTP 194
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFAD 360
NRGFAF+ + ++A + R + + F +D VS+AD
Sbjct: 195 TRNRGFAFILY--YNNACADYSRQKMLNANFKLDGHTPTVSWAD 236
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
VF+ GLP ED +R+L + GEI +I L ++ + + K F FV F + + A
Sbjct: 77 VFIGGLPKDVIEDELRDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVA 129
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + + +A+ EL
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKALEEL 125
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 183
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 184 AQDEN--GNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKK-DRQSKF--- 237
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + E+ REL YGE+T LAR+ K + FGFV F TH
Sbjct: 238 -EEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDN-EGKSRGFGFVNFTTH 295
Query: 426 DAAVTCAKSINNAEL 440
+A + +N E
Sbjct: 296 ASAAKAVEELNGKEF 310
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V+V ++ +V ++ R++F++ GEVT L + + K ++GF F
Sbjct: 232 DRQSKFEEM-KANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGK-SRGFGF 289
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F T A +AV EL G++ V +Q
Sbjct: 290 VNFTTHASAAKAVEELNGKEFRGQELYVGRAQ 321
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + +V +A+ EL
Sbjct: 70 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKALEEL 129
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 130 NYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG--NILSCKV 187
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 188 ATDEN--GNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKK-DRQSKF--- 241
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V++ + E+ RE +GEIT LAR+ K + FGFV + TH
Sbjct: 242 -EEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDA-EGKPRGFGFVNYSTH 299
Query: 426 DAAVTCAKSINNAE 439
+A C + +N E
Sbjct: 300 ASAAKCVEEMNGKE 313
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 133/284 (46%), Gaps = 31/284 (10%)
Query: 167 AGEEAERPEMVDAEEHDHHEMFQE---------------RRKRKEFEVFVGGLDKDVVGD 211
AGE +++ + H+++ QE R++ K EVF+G L +D D
Sbjct: 10 AGECQRTMRLLEMQRRTHYDLVQENGQRRLTAPEVARGDRQRGKGAEVFLGRLPRDCYED 69
Query: 212 DLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGV 270
+L + QVG + E+RLM++ + +G+AF F AR A L I G + GV
Sbjct: 70 ELMPLLEQVGRLLELRLMLDF-SGSTRGYAFALFEDSRVARIACERLDGYEIRPGHRIGV 128
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D+ LF G + KT TK E+L +D + D+ + + + +NRGF F+EF
Sbjct: 129 VKSMDNCRLFFGGVPKTKTKPEFMEELTKI-LDGITDIYVYPSAQDRNLNRGFIFVEFKD 187
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD----EIMAQVKTVFVDGLPASWD 386
A A ++L V+ D V +AD +PGD +IM V +FV L
Sbjct: 188 HRAAAMARRKLIPGKVMLW-DHEIAVDWADP--EPGDPIDEDIMETVTALFVRNLALDMS 244
Query: 387 EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
+ +VRE+L Y + ++L K F FV ++ +AA T
Sbjct: 245 QQKVREILYRYTNVPILKL------KKINHFAFVHYENREAAKT 282
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKRKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGTVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 181 AQDEN--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
DE+ A ++V + +D R L + YG++T LAR+ + K + FGFV F +H
Sbjct: 235 -DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSH 293
Query: 426 DAAVTCAKSINNAEL 440
+ A + +N E
Sbjct: 294 EDASKAVQELNEKEF 308
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 22/252 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + + +A+ EL
Sbjct: 59 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEEL 118
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 119 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG--NILSCKV 176
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A +A K L ++ V G P K +
Sbjct: 177 AQDEN--GNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKF---- 230
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + +D REL + YG+IT LA + + K + FGFV F H
Sbjct: 231 -EEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKH 289
Query: 426 DAAVTCAKSINN 437
++A +N+
Sbjct: 290 ESAAKAVDELND 301
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V +D +V D+ R++F + G++T L + +T K++GF F+ F E
Sbjct: 231 EEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHE 290
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL + G++ V +Q
Sbjct: 291 SAAKAVDELNDKDWKGQKLYVGRAQ 315
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSAID 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKFIDG---ASIEVTLAKPVNK 311
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 133/269 (49%), Gaps = 24/269 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+G L +D D+L + VG + E+RLMM+ N+G+AF + E AR+AV E
Sbjct: 66 EVFIGKLPRDFFEDELVPLLETVGPIYELRLMMD-FAGSNRGYAFATYTNREDARRAVRE 124
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY--GVDNVEDLTLVEDS 314
L I GK+ GV S D+ LF+G I +T T+E + ++ GV NV T V D
Sbjct: 125 LDEKEIRRGKRIGVCKSTDNCRLFVGGIPRTKTREDVFSEMSRVTEGVVNVILYTSVMDK 184
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
NRGFAF+E++ A A +++ + V +A+ ++ M++V
Sbjct: 185 TR---NRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHDVAVDWAEPEPQVDEDTMSKVM 241
Query: 375 TVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
++V L S ED +RE+ G +++K++ K +DF F+ + + + A T
Sbjct: 242 VLYVRNLVLSTTEDELREVFSLNGSLKVSKVK--------KIRDFAFIHYRSREEATTAL 293
Query: 433 KSINNAELGEGDNKAKVRARLSRPLQRGK 461
+++ N A ++L R ++ K
Sbjct: 294 EAMQT-------NNAFTPSKLCRSVEEAK 315
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 116 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKALEDL 175
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 176 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 233
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A +A K L ++ V G P K F
Sbjct: 234 AQDEN--GNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKK-DRQSKF--- 287
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V +PA ++ REL YG++T LAR+ K + FGFV F TH
Sbjct: 288 -EEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARS-DEGKSRGFGFVNFTTH 345
Query: 426 DAAVTCAKSIN 436
+AA + +N
Sbjct: 346 EAASKAVEELN 356
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 31/242 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 197 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAA 255
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V P +D + +++ NI T E +E
Sbjct: 256 ANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELF 315
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
YG +V +L ++EG +RGF F+ F++ A A + L +D L+ V R
Sbjct: 316 AKYG--DVTSSSLAR--SDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELY-VGRA 370
Query: 354 AKVSFADSFIDPGDEIMAQVKT-------VFVDGLPASWDEDRVRELLKNYGEITKIELA 406
K + + E Q K +++ L D+D++R++ YG IT ++
Sbjct: 371 QKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKVM 430
Query: 407 RN 408
R+
Sbjct: 431 RD 432
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V + +V ++ R++F++ G+VT L + + K++GF F+ F T E
Sbjct: 288 EEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEG-KSRGFGFVNFTTHE 346
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL G++ V +Q
Sbjct: 347 AASKAVEELNGKDFRGQELYVGRAQ 371
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFSKFKPGAVERVK--------KLRDYAFVHFFHREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 53 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEEL 112
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 113 NYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFG--NILSCKV 170
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A +A K L ++ V G P K F
Sbjct: 171 AQDEN--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKK-ERQSKF--- 224
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
DE+ A V+V + +D R L +N+G+IT LAR+ S + FGFV F +H
Sbjct: 225 -DEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSH 283
Query: 426 DAAVTCAKSINNAEL 440
+AA +++ EL
Sbjct: 284 EAAAAAVDALHETEL 298
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 103/259 (39%), Gaps = 55/259 (21%)
Query: 184 HHEMFQERR------KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH +ER+ K V+V +D +V D+ R +F G++T L + + +
Sbjct: 213 HHIPKKERQSKFDEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTS 272
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 297
+GF F+ F++ E A AV L + G+ LF+G K +E +E
Sbjct: 273 RGFGFVNFSSHEAAAAAVDALHETELKGQ-----------ALFVGRAQKKHERE--EELR 319
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
K Y +E + S +G+N L + D +D +RL++ +G AKV
Sbjct: 320 KQYEAARIE-----KASKYQGVN-----LYVKNLDDEIDD-ERLRQEFSPYGTITSAKV- 367
Query: 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417
DS P ++ DG +E +V E E A + K K F
Sbjct: 368 MRDSLDSPKEK----------DG-----EESKVGE---------PEEKATDKKQGKSKGF 403
Query: 418 GFVTFDTHDAAVTCAKSIN 436
GFV F D A +N
Sbjct: 404 GFVCFSNPDEASKAVAEMN 422
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 36/130 (27%)
Query: 185 HEMFQERRKRKE------------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN- 231
HE +E RK+ E ++V LD ++ + LR+ FS G +T ++M +
Sbjct: 312 HEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDDERLRQEFSPYGTITSAKVMRDS 371
Query: 232 ----------------PQTK-------KNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
P+ K K+KGF F+ F+ ++A +AV E+ ++NGK
Sbjct: 372 LDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPL 431
Query: 269 GVTPSQDSDT 278
V +Q D
Sbjct: 432 YVALAQRKDV 441
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGSVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 173
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 174 AQDE--FGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 227
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V L + REL + YGEIT L+R+ + K + FGFV F H
Sbjct: 228 -EEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNH 286
Query: 426 DAAVTCAKSINNAE 439
D+A + +N+ E
Sbjct: 287 DSAAAAVEDLNDKE 300
Score = 46.6 bits (109), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V+V L+ +V ++ R++F + GE+T L + +T K+
Sbjct: 216 HHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKS 275
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F + A AV +L + G++ V +Q
Sbjct: 276 RGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQ 312
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 22/251 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 64 LYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEEL 123
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 181
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 182 AQDET--GASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKK-DRQSKF--- 235
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V +P ++ REL + +G++T LAR+ S K + FGFV F H
Sbjct: 236 -EEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINH 294
Query: 426 DAAVTCAKSIN 436
+ A +N
Sbjct: 295 EHAAKAVDELN 305
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V + + ++ R++F + G+VT L + + K++GF F+ F E
Sbjct: 236 EEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHE 295
Query: 250 QARQAVTEL 258
A +AV EL
Sbjct: 296 HAAKAVDEL 304
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGRFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGTVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKFIDG---ASIEVTLAKPVNK 311
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 140/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ ++ E +K + K +D+ FV F + AV A S+
Sbjct: 238 LYVRNLMISTTEETIK------AEFSKFKPGAVERVKKLRDYAFVHFFHREDAVA-AMSV 290
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N + +G A + L++P+ +
Sbjct: 291 MNGKCIDG---ASIEVTLAKPVNK 311
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 158/322 (49%), Gaps = 40/322 (12%)
Query: 171 AERPEMVDAEEHDHHEMFQERRKRK---------------EFEVFVGGLDKDVVGDDLRK 215
AE ++D E + M QE +RK EVFVG + +D+ D+L
Sbjct: 35 AEVVALLDLMEKTGYSMVQENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDELVP 94
Query: 216 VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQ 274
+F + G++ E RLMM T +N+G+AF+ + E A++A+ L N + GK GV S
Sbjct: 95 LFERAGKLYEFRLMME-FTGENRGYAFVMYTNKEAAQRAIQMLDNYKVRPGKFIGVCVSL 153
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
D+ LF+G+I K TK+ + ++K D V D+ + S ++ NRGFAF+E+ S A
Sbjct: 154 DNCRLFIGSIPKEKTKDEVMAEMKKV-TDGVVDVIMYPSSTDKSRNRGFAFVEYKSHKAA 212
Query: 335 MDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVREL 393
A ++L L+G + +V +A+ D +E+M +V+ ++V L S E+ + +
Sbjct: 213 AMARRKLIPGTFQLWG--QSIQVDWAEPEKDVEEEVMQRVRVIYVRNLMLSTTEETLFQE 270
Query: 394 LKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451
++ G + +++ K D+ FV + + A+ +N ++ + A +
Sbjct: 271 FSHFKPGSVERVK--------KLTDYAFVHYYCREDALAALAIMNGVQI----DGATIEV 318
Query: 452 RLSRPL-----QRGKGKHASRG 468
L++P G +H +RG
Sbjct: 319 MLAKPATIKEDSNGSRRHGNRG 340
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 68 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 126
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 127 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 185
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+++ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 186 KTKNRGFAFVKYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 243
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
+FV L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 244 LFVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 294
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ + + +G A + L++P+ +
Sbjct: 295 SVMSGKCIDG---ASIEVTLAKPVNK 317
>gi|414871238|tpg|DAA49795.1| TPA: hypothetical protein ZEAMMB73_765896 [Zea mays]
Length = 468
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+ +VK+VF+DG+P WDED+VRE+ + +GEI I+LARNM +A RKDFGF+ F +A+
Sbjct: 118 LYRVKSVFLDGVPPHWDEDKVREIFRKFGEIDSIQLARNMFTAARKDFGFIGFTARQSAL 177
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRP 456
C K +N +GEG K ++A L RP
Sbjct: 178 DCIKMVNKDGVGEGSGKVPIKASLQRP 204
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEEL 120
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 179 AQDET--GASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 232
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + A ED R+L + YG++T LAR+ K + FGFV F TH
Sbjct: 233 -EEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQ-EGKSRGFGFVNFTTH 290
Query: 426 DAAVTCAKSINNAEL 440
++A +NN +
Sbjct: 291 ESAFKAVDELNNKDF 305
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + +T +KG+ F+ + T E A
Sbjct: 142 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAA 200
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKL 297
QA+ + ++N K+ V P +D + +++ NI T++ ++
Sbjct: 201 SQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLF 260
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+ YG +V +L D EG +RGF F+ F++ A A L +D L+ V R
Sbjct: 261 EKYG--DVTSSSLARDQ--EGKSRGFGFVNFTTHESAFKAVDELNNKDFHGQDLY-VGRA 315
Query: 354 AKV---------SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIE 404
K S+ + ++ ++ Q +++ L D+D++RE+ K++G IT +
Sbjct: 316 QKKHEREEELRKSYEAARLEKANKY--QGVNLYIKNLDDDVDDDKLREMFKDFGSITSAK 373
Query: 405 LARNMPS 411
+ R P+
Sbjct: 374 VMRETPT 380
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L + V G AK F
Sbjct: 175 AQDEF--GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG-HHIAKKDRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + E+ R+L + +GEIT LAR+ S K + FGFV F +H
Sbjct: 229 -EEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 426 DAAVTCAKSINNAEL 440
D A +++N+ +
Sbjct: 288 DNAAAAVEALNDKDF 302
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E +NA + + D + H + ++ R+ K FE V+V +D+D
Sbjct: 189 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK-FEEMKANFTNVYVKNIDQDT 247
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
++ R +F + GE+T L + ++ K++GF F+ F + + A AV L + G++
Sbjct: 248 TEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Query: 269 GVTPSQ 274
V +Q
Sbjct: 308 YVGRAQ 313
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD+ V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 61 LYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 120
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 121 NYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFG--NILSCKV 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 179 AQDEH--GNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 232
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A +++ L A +D R+L + YG +T +AR+ + K + FGF+ F TH
Sbjct: 233 -EEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTH 291
Query: 426 DAAVTCAKSINNAEL 440
++A + +N+ E+
Sbjct: 292 ESAAKAVEELNSREI 306
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K +++ L DV D+ RK+F Q G VT + + +T K++GF F+ F T E
Sbjct: 233 EEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHE 292
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL + I+G++ V +Q
Sbjct: 293 SAAKAVEELNSREIHGQELYVGRAQ 317
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L + V G AK F
Sbjct: 175 AQDEF--GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG-HHIAKKDRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + E+ R+L + +GEIT LAR+ S K + FGFV F +H
Sbjct: 229 -EEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 426 DAAVTCAKSINNAEL 440
D A +++N+ +
Sbjct: 288 DNAAAAVEALNDKDF 302
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E +NA + + D + H + ++ R+ K FE V+V +D+D
Sbjct: 189 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK-FEEMKANFTNVYVKNIDQDT 247
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
++ R +F + GE+T L + ++ K++GF F+ F + + A AV L + G++
Sbjct: 248 TEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Query: 269 GVTPSQ 274
V +Q
Sbjct: 308 YVGRAQ 313
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 173
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 174 AQDEF--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 227
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V L + REL + YGEIT L+R+ + K + FGFV F H
Sbjct: 228 -EEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNH 286
Query: 426 DAAVTCAKSINNAE 439
D+A + +N+ E
Sbjct: 287 DSAAAAVEDLNDKE 300
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V+V L+ +V ++ R++F + GE+T L + +T K+
Sbjct: 216 HHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKS 275
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F + A AV +L + G++ V +Q
Sbjct: 276 RGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQ 312
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L + V G AK F
Sbjct: 175 AQDE--FGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG-HHIAKKDRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + E+ R+L + +GEIT LAR+ S K + FGFV F +H
Sbjct: 229 -EEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 426 DAAVTCAKSINNAEL 440
D A +++N+ +
Sbjct: 288 DNAAAAVEALNDKDF 302
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E +NA + + D + H + ++ R+ K FE V+V +D+D
Sbjct: 189 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK-FEEMKANFTNVYVKNIDQDT 247
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
++ R +F + GE+T L + ++ K++GF F+ F + + A AV L + G++
Sbjct: 248 TEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Query: 269 GVTPSQ 274
V +Q
Sbjct: 308 YVGRAQ 313
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 136/248 (54%), Gaps = 16/248 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG L +DV D+L ++FS +G + E+RLMM+ + N+GFAF++FA + A +A+
Sbjct: 43 EIFVGKLPRDVFEDELYRIFSTIGPIYELRLMMDF-SGSNRGFAFIQFAHRQDANRAIQL 101
Query: 258 LKNPVINGK-QCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ N + + GV S D+ LF+G I KT ++E ++ +++ + V + + +
Sbjct: 102 MDNYELRPRHHIGVVKSIDNCRLFIGGIPKTKSREEIQGEMERL-TEGVTKVIVYSSITD 160
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQ-KRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ + A A ++L R L+G + V +A+ + +++M+QV
Sbjct: 161 KTKNRGFAFVEYINHRAASKARRKLIPDRIQLWG--KEIAVDWAEPENEIEEDVMSQVTV 218
Query: 376 VFVDGLPASWDEDRVRELLKNYGE--ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L + E +REL + + K+++ R DF F+ F + + A +
Sbjct: 219 LYVRNLSLTTTEQVLRELFNRVSDDNVQKLKMMR--------DFAFIHFSSREKAEKAMR 270
Query: 434 SINNAELG 441
++N+ E+
Sbjct: 271 NMNHTEIN 278
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 141/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G++ E RLMM + +N+G+AF+ + E+A A+
Sbjct: 62 EVFVGKIPRDMYEDELVPLFERAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIRM 120
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G+I + KE + E++K + V D+ + + +
Sbjct: 121 LNNYEIRQGKFIGVCASLDNCRLFIGSIPQEKRKEDILEEMKKV-TEGVMDVIVCPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+ + S R+ AM K + L+G R KV +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVTYESHRAAAMARRKLIPGTFQLWG--RTIKVDWADPEKEVDEETMQKVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ Y G + +++ K +D+ FV F D A+ A
Sbjct: 238 LYVRNLMMSTTEETIKAEFNRYKPGVVERVK--------KIRDYAFVHFFRRDYAIA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S N L +G A++ L++P+ +
Sbjct: 289 SEMNGRLIDG---ARIEVTLAKPVNK 311
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 64 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEEL 123
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 181
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 182 AQDES--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKK-DRQSKF--- 235
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V +PA +D+ REL + +G++T LAR+ + K + FGFV F H
Sbjct: 236 -EEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARD-EAGKNRGFGFVNFINH 293
Query: 426 DAAVTCAKSIN 436
+ A +N
Sbjct: 294 EHASAAVDELN 304
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 33/243 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + ++ +KG+ F+ + T E A
Sbjct: 145 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ESGNSKGYGFVHYETDEAA 203
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKL 297
QA+ + ++N K+ V P +D + +++ NI T + +E
Sbjct: 204 SQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPADATDDQFRELF 263
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL---FGVDRPA 354
+ +G +V +L D G NRGF F+ F + A A L +D + V R
Sbjct: 264 EKFG--DVTSASLARDE--AGKNRGFGFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQ 319
Query: 355 KV---------SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405
K S+ + I+ + Q ++V L D++++REL YG IT ++
Sbjct: 320 KKHEREEELRKSYEAARIEKASKY--QGVNLYVKNLEDDVDDEKLRELFAPYGAITSAKV 377
Query: 406 ARN 408
R+
Sbjct: 378 MRD 380
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 143/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEAAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K+ + V D+ + + +
Sbjct: 121 LNNFEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKNV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F D A+T A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNRDDAMT-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKYIDG---AGIEVTLAKPVNK 311
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 62 LYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 121
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 122 NYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 179
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 180 AQDEN--GNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 233
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + ED R+L + YG++T LAR+ K + FGFV F TH
Sbjct: 234 -EEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQ-EGKSRGFGFVNFTTH 291
Query: 426 DAAVTCAKSIN 436
++A +N
Sbjct: 292 ESAAKAVDELN 302
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V+V + + DD R++F Q G+VT L + Q K++GF F
Sbjct: 228 DRQSKFEEM-KANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARD-QEGKSRGFGF 285
Query: 243 LRFATVEQARQAVTEL 258
+ F T E A +AV EL
Sbjct: 286 VNFTTHESAAKAVDEL 301
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEEL 120
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 179 AQDET--GASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 232
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + A ED R+L + YG++T LAR+ K + FGFV F TH
Sbjct: 233 -EEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQ-EGKSRGFGFVNFTTH 290
Query: 426 DAAVTCAKSINNAEL 440
++A +NN +
Sbjct: 291 ESASKAVDELNNKDF 305
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V + DV DD R++F + G+VT L + Q K++GF F+ F T E
Sbjct: 233 EEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARD-QEGKSRGFGFVNFTTHE 291
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL N +G+ V +Q
Sbjct: 292 SASKAVDELNNKDFHGQDLYVGRAQ 316
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 173
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 174 AQDEF--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 227
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V L + REL + YGEIT L+R+ + K + FGFV F H
Sbjct: 228 -EEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNH 286
Query: 426 DAAVTCAKSINNAE 439
D+A + +N+ E
Sbjct: 287 DSAAAAVEDLNDKE 300
Score = 46.2 bits (108), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V+V L+ +V ++ R++F + GE+T L + +T K+
Sbjct: 216 HHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKS 275
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F + A AV +L + G++ V +Q
Sbjct: 276 RGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQ 312
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 63 LYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VING+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 181 AQDEH--GNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + + +D R+L YGE+T LAR+ K + FGFV F TH
Sbjct: 235 -EEMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQ-EGKSRGFGFVNFTTH 292
Query: 426 DAAVTCAKSIN 436
+AA + +N
Sbjct: 293 EAASQAVEELN 303
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V ++ + D+ R +F++ GEVT L + Q K++GF F+ F T E
Sbjct: 235 EEMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARD-QEGKSRGFGFVNFTTHE 293
Query: 250 QARQAVTEL 258
A QAV EL
Sbjct: 294 AASQAVEEL 302
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 288 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 346
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 347 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 405
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 406 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 463
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 464 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 514
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 515 SVMNGKCIDG---ASIEVTLAKPVNK 537
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 157/324 (48%), Gaps = 42/324 (12%)
Query: 176 MVDAEEHDHHEMFQERRKRKE-----------------FEVFVGGLDKDVVGDDLRKVFS 218
++ E ++M QE +RK EVFVG + +D D+L VF
Sbjct: 20 LLSLMERTGYQMIQENGQRKYGGPPPNWSPSVPAPARGCEVFVGKIPRDCYEDELVPVFE 79
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++GE+ E+RLMM+ + N+G+ F+ + + A++AV EL N I G+ GV S D+
Sbjct: 80 KIGEIYELRLMMD-FSGSNRGYCFVMYTKRDDAKRAVRELNNFEIRKGRFLGVCLSVDNC 138
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMD 336
LF+G I K + ++ ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 139 RLFVGGIPKNKQRHEIRTEMKKV-TEGVVDVIVYPSATDKAKNRGFAFVEYESHRAAAMA 197
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL----PASWDEDRVRE 392
K + R L+G V +A+ + +++M++VK ++V L + E +
Sbjct: 198 RRKLIPGRIQLWG--HQIAVDWAEPEQEVDEDVMSKVKILYVRNLMLTTTEEFLETTFNQ 255
Query: 393 LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
G + +++ K +D+ FV F D A+ A + N +L EG + V
Sbjct: 256 ACGKEGAVERVK--------KLRDYAFVHFKERDDALL-AMEVINGQLIEG---SMVEVT 303
Query: 453 LSRPLQRGKGKHASRGDFRSGRGT 476
L++P+ + +RG GRG
Sbjct: 304 LAKPVDKNSYVRYTRG---GGRGA 324
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 76 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 134
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 135 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 193
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 194 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 251
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 252 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 302
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 303 SVMNGKCIDG---ASIEVTLAKPVNK 325
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ + +F+ N+ +AL + +G N+ +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 181 AQDEH--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + +D REL + +GE+T LAR+ K + FGFV F TH
Sbjct: 235 -EEMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQ-EGKTRGFGFVNFTTH 292
Query: 426 DAAVTCAKSIN 436
+AA +N
Sbjct: 293 EAAAKAVDDLN 303
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V ++ +V D+ R++F + GEVT L + Q K +GF F+ F T E
Sbjct: 235 EEMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARD-QEGKTRGFGFVNFTTHE 293
Query: 250 QARQAVTEL 258
A +AV +L
Sbjct: 294 AAAKAVDDL 302
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 130/260 (50%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS VG+V+ +R+ + TKK+ G+A++ F +E +A+ EL
Sbjct: 52 LYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEEL 111
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I+G+ C + SQ +L F+ N+ +AL + +G + L+
Sbjct: 112 NYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFG----KILSC 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ +G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 168 KVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKF---- 223
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V+V + + E+ +R+L + YG+IT + L ++ K K FGFV
Sbjct: 224 ------EEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKD-AEGKSKGFGFV 276
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F++H+AAV + +N+ ++
Sbjct: 277 NFESHEAAVKAVEELNDKDI 296
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V +D +++RK+F G++T + L + + K+KGF F+ F + E A +AV EL
Sbjct: 233 VYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEG-KSKGFGFVNFESHEAAVKAVEEL 291
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ + L+
Sbjct: 292 NDKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLE 351
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344
E+ K +G + + E G ++GF F+ FSS +A A + +R
Sbjct: 352 EEFKPFGTITSARVMVDE----HGKSKGFGFVCFSSPEEATKAITEMNQR 397
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + L + F G +T R+M++ + K+KGF F+ F++ E+A +A+TE+
Sbjct: 336 LFVKNLDDSIDSVKLEEEFKPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAITEM 394
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+ +GK V +Q D
Sbjct: 395 NQRMFHGKPLYVALAQRKDV 414
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 145/281 (51%), Gaps = 26/281 (9%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ F +G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDL--------FEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 107
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 108 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 166
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 167 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 224
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 225 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 278
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 279 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 313
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 145/281 (51%), Gaps = 26/281 (9%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ F +G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDL--------FEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 107
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 108 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 166
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 167 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 224
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 225 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 278
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 279 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 313
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 171
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 172 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 223
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ L + D+D R++ + +GEIT L+R+ K + FGFV F T
Sbjct: 224 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 282
Query: 425 HDAAVTCAKSINNAEL 440
H++A + +N+ E+
Sbjct: 283 HESAQAAVEEMNDKEI 298
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V++ LD ++ D+ RK+F + GE+T L + Q K+
Sbjct: 214 HHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD-QEGKS 272
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+T E A+ AV E+ + I ++ V +Q
Sbjct: 273 RGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQ 309
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 173
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 174 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 225
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ L + D+D R++ + +GEIT L+R+ K + FGFV F T
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 284
Query: 425 HDAAVTCAKSINNAEL 440
H++A + +N+ E+
Sbjct: 285 HESAQAAVEEMNDKEI 300
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V++ LD ++ D+ RK+F + GE+T L + Q K+
Sbjct: 216 HHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD-QEGKS 274
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+T E A+ AV E+ + I ++ V +Q
Sbjct: 275 RGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQ 311
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + E +A+ EL
Sbjct: 49 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 108
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 109 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG--NILSCKV 166
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A +A K L ++ V G P K +
Sbjct: 167 AQDEH--GNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---- 220
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D R+L + +G+IT +AR+ K + FGFV + H
Sbjct: 221 -EEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKH 278
Query: 426 DAAVTCAKSINNAEL 440
+AA +++N+ E
Sbjct: 279 EAASVAVETLNDTEF 293
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 135/275 (49%), Gaps = 34/275 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS VG+V+ +R+ + TKK+ G+A++ F +E +A+ +L
Sbjct: 52 LYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDL 111
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I+G+ C + SQ +L F+ N+ +AL + +G + L+
Sbjct: 112 NYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFG----KILSC 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ +G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 168 KVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRESKF---- 223
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V+V + + E+ +R L + YG+IT + L ++ K K FGFV
Sbjct: 224 ------EEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKD-AEGKSKGFGFV 276
Query: 421 TFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSR 455
F++H+AAV + +N+ ++ G N RA+ R
Sbjct: 277 NFESHEAAVKAVEELNDKDIN-GQNLYVGRAQKKR 310
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 29/179 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V +D +++R +F G++T + L + + K +KGF F+ F + E
Sbjct: 224 EEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGK-SKGFGFVNFESHE 282
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV EL + ING+ V +Q LF+ N+
Sbjct: 283 AAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLD 342
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344
+ L+E+ K +G + + E G ++GF F+ FSS +A A + +R
Sbjct: 343 DSIDSVKLEEEFKPFGTITSARVMVDE----HGKSKGFGFVCFSSPEEATKAITEMNQR 397
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + L + F G +T R+M++ + K+KGF F+ F++ E+A +A+TE+
Sbjct: 336 LFVKNLDDSIDSVKLEEEFKPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAITEM 394
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+ +GK V +Q D
Sbjct: 395 NQRMFHGKPLYVALAQRKDV 414
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 113/201 (56%), Gaps = 6/201 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + + G+V E+R+MM+ N+G+AF+ F + AR A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMD-FNGNNRGYAFVTFTNRQDARDAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + +++ D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKV-TDGVLDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKN 396
++V L + E+ + + N
Sbjct: 233 LYVRNLMLTTAEETIEKEFSN 253
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 25/155 (16%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
+F+G + + ++ L + G V ++ ++ D N G NRG+AF+ F++R DA DA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKTG--KVYEMRMMMDFN--GNNRGYAFVTFTNRQDARDAI 113
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
K+L ++ R ++ + +D +FV G+P + R E+L
Sbjct: 114 KQLNNYEI-----RNGRLLGVCASVDNCR--------LFVGGIPKT---KRREEILVEMR 157
Query: 399 EITKIEL-ARNMPSA----KRKDFGFVTFDTHDAA 428
++T L PSA K + F FV +++H AA
Sbjct: 158 KVTDGVLDVIVYPSAADKSKNRGFAFVEYESHRAA 192
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 113/201 (56%), Gaps = 6/201 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + + G+V E+R+MM+ N+G+AF+ F + AR A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMD-FNGNNRGYAFVTFTNRQDARDAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + +++ D V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKV-TDGVLDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKN 396
++V L + E+ + + N
Sbjct: 233 LYVRNLMLTTAEETIEKEFSN 253
Score = 42.7 bits (99), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 25/155 (16%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
+F+G + + ++ L + G V ++ ++ D N G NRG+AF+ F++R DA DA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKTG--KVYEMRMMMDFN--GNNRGYAFVTFTNRQDARDAI 113
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
K+L ++ R ++ + +D +FV G+P + R E+L
Sbjct: 114 KQLNNYEI-----RNGRLLGVCASVDNCR--------LFVGGIPKT---KRREEILVEMR 157
Query: 399 EITKIEL-ARNMPSA----KRKDFGFVTFDTHDAA 428
++T L PSA K + F FV +++H AA
Sbjct: 158 KVTDGVLDVIVYPSAADKSKNRGFAFVEYESHRAA 192
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 138/264 (52%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTMKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+++ S R AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVKYESHREPAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L S E+ ++ GE K + K +D+ FV F + AV A S+
Sbjct: 238 LFVRNLMISTTEETIK------GEFNKFKPGAVERVKKLRDYAFVHFFNREDAVA-AMSV 290
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
+ + +G A + L++P+ +
Sbjct: 291 MSGKCIDG---ASIEVTLAKPVNK 311
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 141/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D L +F++ G++ E RLMM + +N+G+AF+ + E+A A+
Sbjct: 62 EVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIRM 120
Query: 258 LKN-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N + GK GV S D+ LF+G+I + KE + E++K + V D+ + + +
Sbjct: 121 LNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKV-TEGVMDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+ + S R+ AM K + L+G KV++A + +E M +VK
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWG--HTIKVAWASPEKEVDEETMQKVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ Y G + +++ K +D+ FV F D A+ A
Sbjct: 238 LYVRNLMMSTTEETIKAEFNRYKPGVVERVK--------KIRDYAFVHFFRRDYAIA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N L +G A++ L++P+ +
Sbjct: 289 SVMNGRLIDG---ARIEVTLAKPVNK 311
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 173
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 174 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 225
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ L + D+D R++ + +GEIT L+R+ K + FGFV F T
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 284
Query: 425 HDAAVTCAKSINNAEL 440
H++A + +N+ E+
Sbjct: 285 HESAQAAVEEMNDKEI 300
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V++ LD ++ D+ RK+F + GE+T L + Q K++GF F
Sbjct: 222 DRQSKFEEM-KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD-QEGKSRGFGF 279
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F+T E A+ AV E+ + I ++ V +Q
Sbjct: 280 VNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQ 311
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 119/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 121
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 179
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 180 AQDEN--GNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 233
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D REL + YG+IT LAR+ K + FGFV F TH
Sbjct: 234 -EEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQ-EGKSRGFGFVNFTTH 291
Query: 426 DAAVTCAKSIN 436
++A + ++
Sbjct: 292 ESAAKAVEELH 302
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V + + D+ R++F + G++T L + Q K++GF F+ F T E
Sbjct: 234 EEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARD-QEGKSRGFGFVNFTTHE 292
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
A +AV EL G+ V +Q + K++ L++ K+ GV N+
Sbjct: 293 SAAKAVEELHGKDFRGQDLYVGRAQKKHER-EEELRKSYEAARLEKANKYQGV-NLYIKN 350
Query: 310 LVEDSNNEGMNRGFA 324
L +D ++E + + FA
Sbjct: 351 LDDDVDDEKLRQMFA 365
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 145/281 (51%), Gaps = 26/281 (9%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ F +G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDL--------FEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 107
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 108 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 166
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 167 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 224
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 225 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 278
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 279 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 313
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 175 AQDEF--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V L + REL + YGEIT ++R+ + K + FGFV F H
Sbjct: 229 -EEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKH 287
Query: 426 DAAVTCAKSINNAE 439
++A + +N+ E
Sbjct: 288 ESAAAAVEELNDKE 301
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 114/264 (43%), Gaps = 38/264 (14%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V+V LD +V ++ R++F + GE+T + + +T K+
Sbjct: 217 HHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKS 276
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 297
+GF F+ F E A AV EL + G++ L++G K +E +E
Sbjct: 277 RGFGFVNFVKHESAAAAVEELNDKEYKGQK-----------LYVGRAQKKHERE--EELR 323
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
K + VE + S +G+N L + +D +D ++L+ + FG A+V
Sbjct: 324 KQHEAARVE-----KASKYQGVN-----LYVKNLTDDIDD-EKLRDLFISFGNITSARV- 371
Query: 358 FADSFIDPGDEI-----MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
D+ DPG E A + V + S +ED + K +K + +
Sbjct: 372 MRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSDKVEKSDSKNATEKKL--G 429
Query: 413 KRKDFGFVTFDTHDAAVTCAKSIN 436
K K FGFV F D A +N
Sbjct: 430 KSKGFGFVCFSNPDEASKAVTEMN 453
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ + +F+ N+ +AL + +G N+ +
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFG--NILSCKV 179
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 180 AQDEH--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 233
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + ++ REL +GE+T LAR+ K + FGFV F TH
Sbjct: 234 -EEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKSRGFGFVNFTTH 291
Query: 426 DAAVTCAKSIN 436
+AA +N
Sbjct: 292 EAAAQAVDELN 302
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V+V ++ +V ++ R++F++ GEVT L + Q K++GF F
Sbjct: 228 DRQSKFEEM-KANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGF 285
Query: 243 LRFATVEQARQAVTEL 258
+ F T E A QAV EL
Sbjct: 286 VNFTTHEAAAQAVDEL 301
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 145/281 (51%), Gaps = 26/281 (9%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ F +G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDL--------FEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 107
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 108 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 166
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 167 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 224
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 225 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 278
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 279 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 313
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 22/251 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 116 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 173
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L + V G AK F
Sbjct: 174 AQDEF--GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG-HHIAKKDRQSKF--- 227
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + ++ REL + +GEIT LAR+ S K + FGFV F +H
Sbjct: 228 -EEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSH 286
Query: 426 DAAVTCAKSIN 436
++A ++N
Sbjct: 287 ESAAAAVDNLN 297
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 121/293 (41%), Gaps = 40/293 (13%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E +NA + + D + H + ++ R+ K FE V+V +D+D
Sbjct: 188 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK-FEEMKANFTNVYVKNIDQDT 246
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
++ R++F + GE+T L + ++ K++GF F+ F + E A AV L
Sbjct: 247 TDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFK---- 302
Query: 269 GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
S L++G K +E +E K Y +E + S +G+N L
Sbjct: 303 -------SQKLYVGRAQKKHERE--EELRKQYEAARIE-----KASKYQGVN-----LYI 343
Query: 329 SSRSDAMDAFKRLQKRDVL--FGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLP--AS 384
+ SD +D K RD+ +G AKV + + + + K+ + P S
Sbjct: 344 KNLSDDIDDEKL---RDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEES 400
Query: 385 WDEDRVRELLKNYGEI-TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
DE + K+ E T+ + A K K FGFV F + D A +N
Sbjct: 401 KDEAAEKAETKDTKEAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMN 453
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 46/240 (19%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGF FLE+ A AQVK +
Sbjct: 285 KKKNRGFCFLEYEDHKSA------------------------------------AQVKVL 308
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 309 FVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 360
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ + +F+ N+ +AL + +G N+ +
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFG--NILSCKV 179
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 180 AQDEH--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 233
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + ++ REL +GE+T LAR+ K + FGFV F TH
Sbjct: 234 -EEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKTRGFGFVNFTTH 291
Query: 426 DAAVTCAKSIN 436
+AA +N
Sbjct: 292 EAAAQAVDELN 302
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V+V ++ +V ++ R++F++ GEVT L + Q K +GF F
Sbjct: 228 DRQSKFEEM-KANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKTRGFGF 285
Query: 243 LRFATVEQARQAVTEL 258
+ F T E A QAV EL
Sbjct: 286 VNFTTHEAAAQAVDEL 301
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 67 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEEL 126
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 127 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 184
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 185 AQDEN--GNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKK-DRQSKF--- 238
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R+L YG++T LAR+ K + FGFV F TH
Sbjct: 239 -EEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARD-SEGKSRGFGFVNFTTH 296
Query: 426 DAAVTCAKSINNAEL 440
+ A + +N E
Sbjct: 297 ECAAKAVEELNGKEF 311
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 148 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAA 206
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKL 297
QA+ + N ++N K+ V P +D + +++ NI T E ++
Sbjct: 207 AQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLF 266
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
YG +V +L DS EG +RGF F+ F++ A A + L ++ L+ V R
Sbjct: 267 AKYG--DVTSSSLARDS--EGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLY-VGRA 321
Query: 354 AKV---------SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIE 404
K S+ + ++ ++ Q +++ L D+D++R++ YG IT +
Sbjct: 322 QKKHEREEELRKSYEAARLEKANKY--QGVNLYIKNLADDIDDDKLRQMFSEYGPITSAK 379
Query: 405 LARN 408
+ R+
Sbjct: 380 VMRD 383
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Query: 268 CGVTPS------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
G TPS Q S +L++G + + T+ L E G +V + + D+ +
Sbjct: 50 AGPTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIG--SVASIRVCRDTITR-RSL 106
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+A++ ++S SD A + L + RP ++ ++ DP Q VF+ L
Sbjct: 107 GYAYVNYNSTSDGEKALEELNYTLI---KGRPCRIMWSQR--DPALRKTGQ-GNVFIKNL 160
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ D + + +G I ++A++ + K +GFV ++T +AA K +NN L
Sbjct: 161 DVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLN 219
Query: 442 E 442
E
Sbjct: 220 E 220
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 181 AQDEN--GNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A +++ + +D REL + YG+IT LAR+ K + FGFV F TH
Sbjct: 235 -EEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQ-EGKSRGFGFVNFTTH 292
Query: 426 DAAVTCAKSIN 436
++A + ++
Sbjct: 293 ESAAKAVEELH 303
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K +++ + + D+ R++F + G++T L + Q K++GF F+ F T E
Sbjct: 235 EEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARD-QEGKSRGFGFVNFTTHE 293
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
A +AV EL G+ V +Q + K++ L++ K+ GV N+
Sbjct: 294 SAAKAVEELHGKDFRGQDLYVGRAQKKHER-EEELRKSYEAARLEKANKYQGV-NLYIKN 351
Query: 310 LVEDSNNEGMNRGFA 324
L +D ++E + + FA
Sbjct: 352 LDDDVDDEKLRQMFA 366
>gi|414867971|tpg|DAA46528.1| TPA: hypothetical protein ZEAMMB73_747315 [Zea mays]
Length = 486
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+ +VK+VF+DG+P WDED+VRE+ +GEI I+LARNM +A RKDFGF+ F +A+
Sbjct: 140 LYRVKSVFLDGVPPHWDEDKVREIFGEFGEIDSIQLARNMFTAARKDFGFIGFTARQSAL 199
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATR 481
C K +N +GEG K ++A L RP +HA + R G + R
Sbjct: 200 DCIKMVNKDGVGEGSGKVPIKASLQRP------RHAFKKYSRQGSSSLLGVR 245
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 177
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 178 AQDEY--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 231
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R L + YGEIT L+R+ + K + FGFV F H
Sbjct: 232 -EEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 426 DAAVTCAKSINNAEL 440
+AA +++N EL
Sbjct: 291 EAASAAVEALNEYEL 305
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E ++V +++DV ++ R +F + GE+T L + +T K+
Sbjct: 220 HHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS 279
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+ E A AV L + G++ V +Q
Sbjct: 280 RGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQ 316
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 139/261 (53%), Gaps = 16/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF Q G + E RLMM + +N+G+AF+ + T E+A++A+
Sbjct: 59 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMME-FSGENRGYAFVMYTTREKAQRAIQL 117
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G+I K KE ++E++ + V D+ + + +
Sbjct: 118 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVD 176
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NRGFAF+E+ S ++ AM K + L+G +V +A+ + +E M +V+
Sbjct: 177 RMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWG--HTIQVDWAEPEKELDEETMQRVRV 234
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ +R E ++++ K D+ F+ F + A+T +S+
Sbjct: 235 LYVRNLMLSTTEETLR------SEFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESM 288
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N G+ + + + L++P
Sbjct: 289 N----GKVIDGSPIEVTLAKP 305
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 175 AQDEN--GSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + +D REL + +G++T +AR K + FGFV F TH
Sbjct: 229 -EEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQ-DGKSRGFGFVNFTTH 286
Query: 426 DAAVTCAKSINNAEL 440
+AA + +NN +L
Sbjct: 287 EAAAKAVEELNNKDL 301
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V + +V D+ R++F + G+VT + Q K++GF F+ F T E
Sbjct: 229 EEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIA-REQDGKSRGFGFVNFTTHE 287
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL N ++G++ V +Q
Sbjct: 288 AAAKAVEELNNKDLHGQELYVGRAQ 312
>gi|242083906|ref|XP_002442378.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
gi|241943071|gb|EES16216.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
Length = 213
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
Q+ R + EVFVGGL + LR++FS GE+ +VR+M + Q +KG+ F+RF+
Sbjct: 67 QDPRTARGTEVFVGGLPRSATESMLREIFSSCGEIIDVRIMKD-QNGHSKGYGFVRFSKR 125
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-D 307
E A A + + GK+ V S D DT+F GN+CK WT E +E + D V D
Sbjct: 126 EYANTAKRQKNGIELQGKRLDVDLSMDQDTVFFGNLCKEWTSEEFEELIHKTFKDVVSVD 185
Query: 308 LTLVED---SNNEGMNRGFAFLEFSSRS 332
L + + SN +NRGFAF+ F+S +
Sbjct: 186 LAMASNRGSSNKRNINRGFAFVRFTSHA 213
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
VFV GLP S E +RE+ + GEI + + ++ + K +GFV F + A T +
Sbjct: 77 VFVGGLPRSATESMLREIFSSCGEIIDVRIMKDQ-NGHSKGYGFVRFSKREYANTAKRQK 135
Query: 436 NNAEL 440
N EL
Sbjct: 136 NGIEL 140
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 141/274 (51%), Gaps = 20/274 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ DDL +F +VG + E RLMM + +N+G+AF+ + E A++A+
Sbjct: 78 EVFVGKIPRDMYEDDLVPLFEKVGRIYEFRLMME-FSGENRGYAFVMYTDREAAQRAIQM 136
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N + GK GV S D+ LF+G+I K K+ + E++K D V D + + +
Sbjct: 137 LDNYEVRPGKFIGVCVSLDNCRLFIGSIPKDKRKDEVIEEMKKV-TDGVVDAIVYPSTTD 195
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S ++ AM K + L+G +V +A+ D +E+M +V+
Sbjct: 196 KNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWG--HSIQVDWAEPEKDVDEEVMQRVRV 253
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ +R+ + G + +++ K D+ F+ + + A+T
Sbjct: 254 LYVRNLMLETSEETLRQEFSRFKPGCVERVK--------KLSDYAFIHYRSRSDALTALS 305
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+N A + + A V L++P G A R
Sbjct: 306 LMNGAHI----DGAAVEVTLAKPAGVKDGGAAGR 335
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALDEL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 181 AQDEH--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D R L + +G +T LAR+ + K + FGFV F +H
Sbjct: 235 -EEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSH 293
Query: 426 DAAVTCAKSINNAEL 440
+ A + +N E
Sbjct: 294 EDASKAVEELNEKEF 308
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V + DV DD R +F + G VT L + +T K++GF F+ F + E
Sbjct: 235 EEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL +G+ V +Q
Sbjct: 295 DASKAVEELNEKEFHGQNLYVGRAQ 319
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 106/271 (39%), Gaps = 63/271 (23%)
Query: 58 VVEDEPKSDVNGSVPATQKEDEVKES----VDEYEKDERLDLDDNEPEYEPEEYGGVDYD 113
++ +E K V +P ++ + +E + Y K+ +LD+ D++ E++G V
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSS 271
Query: 114 DKETEHEDVQEVGN---EEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEE 170
+ E + G H+D + EE ++ E HGQ V A ++
Sbjct: 272 SLARDQETGKSRGFGFVNFTSHEDASKAVEELNE---------KEFHGQ-NLYVGRAQKK 321
Query: 171 AERPEMVDAEEHDHHEMFQER-RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLM 229
ER E + + QE+ K + +++ LD +V D LR++FS+ G +T ++M
Sbjct: 322 HEREEEL---RRSYEAARQEKASKYQGVNLYIKNLDDEVDDDKLRQLFSEFGPITSAKVM 378
Query: 230 ------------------------------------------MNPQTKKNKGFAFLRFAT 247
P+ K+KGF F+ F
Sbjct: 379 RETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKADKKPKLGKSKGFGFVCFGN 438
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
+ A +AV E+ ++NGK V +Q D
Sbjct: 439 PDDATKAVAEMNQRMVNGKPLYVALAQRKDV 469
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 119/255 (46%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 177
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 178 AQDEY--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 231
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R L + YGEIT L+R+ + K + FGFV F H
Sbjct: 232 -EEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 426 DAAVTCAKSINNAEL 440
+AA + +N EL
Sbjct: 291 EAASAAVEGLNEYEL 305
Score = 46.6 bits (109), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E ++V +++DV ++ R +F + GE+T L + +T K+
Sbjct: 220 HHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKS 279
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+ E A AV L + G++ V +Q
Sbjct: 280 RGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQ 316
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 177
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 178 AQDEY--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 231
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R L + YGEIT L+R+ + K + FGFV F H
Sbjct: 232 -EEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 426 DAAVTCAKSINNAEL 440
+AA +++N EL
Sbjct: 291 EAASAAVEALNEYEL 305
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E ++V +++DV ++ R +F + GE+T L + +T K+
Sbjct: 220 HHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS 279
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+ E A AV L + G++ V +Q
Sbjct: 280 RGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQ 316
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 179 AQDEN--GNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKK-DRQSKF--- 232
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + +D REL + +G++T LAR+ K + FGFV F TH
Sbjct: 233 -EEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQ-EGKPRGFGFVNFTTH 290
Query: 426 DAAVTCAKSIN 436
+AA + +N
Sbjct: 291 EAAFKAVEDLN 301
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V + DV D+ R++F + G+VT L + Q K +GF F+ F T E
Sbjct: 233 EEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARD-QEGKPRGFGFVNFTTHE 291
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
A +AV +L G++ V +Q + K++ L++ K+ GV N+
Sbjct: 292 AAFKAVEDLNGKDFRGQELYVGRAQKKHER-EEELRKSYEAARLEKANKYQGV-NLYIKN 349
Query: 310 LVEDSNNEGMNRGFA 324
L +D ++E + + FA
Sbjct: 350 LDDDVDDEKLRQMFA 364
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 139/261 (53%), Gaps = 16/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF Q G + E RLMM + +N+G+AF+ + T E+A++A+
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMME-FSGENRGYAFVMYTTREKAQRAIQL 104
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G+I K KE ++E++ + V D+ + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVD 163
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NRGFAF+E+ S ++ AM K + L+G +V +A+ + +E M +V+
Sbjct: 164 RMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWG--HTIQVDWAEPEKELDEETMQRVRV 221
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ +R E ++++ K D+ F+ F + A+T +S+
Sbjct: 222 LYVRNLMLSTTEETLR------SEFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESM 275
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N G+ + + + L++P
Sbjct: 276 N----GKVIDGSPIEVTLAKP 292
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 177
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 178 AQDE--YGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 231
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R L + YGEIT L+R+ + K + FGFV F H
Sbjct: 232 -EEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 426 DAAVTCAKSINNAEL 440
+AA +++N EL
Sbjct: 291 EAASAAVEALNEYEL 305
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E ++V +++DV ++ R +F + GE+T L + +T K+
Sbjct: 220 HHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS 279
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+ E A AV L + G++ V +Q
Sbjct: 280 RGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQ 316
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKALEEL 120
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 179 AQDEH--GNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 232
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D REL + YGEIT LAR+ K + FGFV + TH
Sbjct: 233 -EEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQ-DGKSRGFGFVNYTTH 290
Query: 426 DAAVTCAKSIN 436
++A +N
Sbjct: 291 ESAYKAVDELN 301
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 181/378 (47%), Gaps = 48/378 (12%)
Query: 68 NGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGN 127
G+ T+ + VK+ +L+ DD D+ E E+V+
Sbjct: 5 TGNAAPTKSAELVKQD--------QLEFDD---------------PDEVDEEEEVEYEEI 41
Query: 128 EEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
EE+ +E EEEE+D + EME V E E ++ +A + E E+ H E+
Sbjct: 42 EEEVEYEEVEEEEEEEDEEDEEMEGVHEIDANDESKMVDADGKVEN------EKEKHAEL 95
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
E V+VGG+ DV +DL+++F VGEV EVR+ N+ +AF+ F T
Sbjct: 96 LALPPHGAE--VYVGGISSDVSSEDLKQLFESVGEVVEVRMR---GKGDNRTYAFINFRT 150
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
A +A+ L N + GK+ V+PSQ + LF+GN+ WT + K ++ G ++
Sbjct: 151 KAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVGPGVLK- 209
Query: 308 LTLVEDSNNEGM--NRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP 365
VE G+ N+G+ F+E+ +++ A A +++ + + P VS+AD
Sbjct: 210 ---VELMKAPGLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPT-VSWADPKNAN 265
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK---RKDFGFVTF 422
AQVK+++V LP + ++++++L ++ GEITK+ + P AK +GFV F
Sbjct: 266 EATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVV----PPAKSGHENRYGFVHF 321
Query: 423 DTHDAAVTCAKSINNAEL 440
A+ K+ EL
Sbjct: 322 KERYMAMKALKNTERYEL 339
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 76 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 135
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 136 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 193
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 194 AQDE--YGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 247
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R L + YGEIT L+R+ + K + FGFV F H
Sbjct: 248 -EEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 306
Query: 426 DAAVTCAKSINNAEL 440
+AA +++N EL
Sbjct: 307 EAASAAVEALNEYEL 321
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E ++V +++DV ++ R +F + GE+T L + +T K+
Sbjct: 236 HHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS 295
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+ E A AV L + G++ V +Q
Sbjct: 296 RGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQ 332
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 16/246 (6%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +DV L ++F+QVG V +R+ + T+++ +A++ + A +A+ L
Sbjct: 10 LYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDTL 69
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
N ++ GK C + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 70 NNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFG--NILSCKV 127
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N +++GF F+ + S+ D+ D K + K + + D+ V S + G
Sbjct: 128 VTDETN--VSKGFGFVHYESQ-DSAD--KAIMKVNGMIINDQKVFVGPFKSSKERGQTQE 182
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
+ V+V L +E+ +R+LL YG+IT + + + S K K FGF F+T D A
Sbjct: 183 LKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKS-KSKGFGFANFETPDEAKN 241
Query: 431 CAKSIN 436
C ++ N
Sbjct: 242 CVEAEN 247
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 131/291 (45%), Gaps = 24/291 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK V L FS G + +++ + +T +KGF F+ + + + A +A+ ++
Sbjct: 98 IFIKNLDKSVDHKALFDTFSAFGNILSCKVVTD-ETNVSKGFGFVHYESQDSADKAIMKV 156
Query: 259 KNPVINGKQCGVTPSQDS-----------DTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+IN ++ V P + S +++ N+ + +E L++ L YG + +
Sbjct: 157 NGMIINDQKVFVGPFKSSKERGQTQELKYTNVYVKNLSEDVNEEELRDLLVPYG--KITN 214
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK----RLQKRDVLFGVDRPAKVSFADSFI 363
LT++ D ++ ++GF F F + +A + + +L V++ V R K ++ +
Sbjct: 215 LTIMSDEKSK--SKGFGFANFETPDEAKNCVEAENGKLFHGKVIY-VGRAQKKMEREAEL 271
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
E Q +++ + S D D++R YG IT ++ R+ S K FGFV +
Sbjct: 272 KHKFETKYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYT 331
Query: 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGR 474
T D A ++ +G NK A R R + A F+ R
Sbjct: 332 TPDEASKAVAEMHGRMVG---NKPLYVAFAQRKEIRRQHLEAQHNKFKGNR 379
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 27/191 (14%)
Query: 189 QERRKRKEFE---VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRF 245
+ER + +E + V+V L +DV ++LR + G++T + +M + ++ K+KGF F F
Sbjct: 175 KERGQTQELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKS-KSKGFGFANF 233
Query: 246 ATVEQARQAVTELKNPVINGKQCGVTPSQDSD-----------------TLFLGNICKTW 288
T ++A+ V + +GK V +Q L++ NI +
Sbjct: 234 ETPDEAKNCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFETKYQGVNLYIKNIDDSI 293
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348
+ L+ YG + ++ D + ++GF F+ +++ +A A + R V
Sbjct: 294 DSDKLRSTFAAYGT--ITSAKVMRDDKSTS-SKGFGFVCYTTPDEASKAVAEMHGRMV-- 348
Query: 349 GVDRPAKVSFA 359
++P V+FA
Sbjct: 349 -GNKPLYVAFA 358
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +++ +D + D LR F+ G +T ++M + ++ +KGF F+ + T ++A
Sbjct: 278 KYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEAS 337
Query: 253 QAVTELKNPVINGKQCGVTPSQ 274
+AV E+ ++ K V +Q
Sbjct: 338 KAVAEMHGRMVGNKPLYVAFAQ 359
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 175 AQDET--GSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V++ + +D+ R L + +G++T +AR+ P K + FGFV F TH
Sbjct: 229 -EEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARD-PDGKSRGFGFVNFTTH 286
Query: 426 DAAVTCAKSINNAEL 440
+AA + +NN +
Sbjct: 287 EAASAAVEELNNKDF 301
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 19/242 (7%)
Query: 229 MMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTW 288
MM Q K+KG+ F+RF T E A +A+ E ++ GK+ GV PS D TLF GN+ K W
Sbjct: 1 MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDW 60
Query: 289 TKEALKEKLKHYGVDNVE--DLTLVEDSNNEGM-----NRGFAFLEFSSRSDAMDAFKRL 341
+ + +K+ +V DL + S + + NRGFAF++FSS + A A +
Sbjct: 61 SPDEF-DKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMG 119
Query: 342 QKRDVLFGVDRPAKVSFADS-FIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEI 400
K D L G V +A+ IDP E +A++ FV LP +ED +++L +G++
Sbjct: 120 SKSDFLLGDSWHPVVEWAEEPEIDP--EELAKITIAFVGNLPKDANEDYLKKLFGPFGKV 177
Query: 401 TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA---KVRARLSRPL 457
K+ L++ S GFV F K +N + +G ++ K++ +++PL
Sbjct: 178 EKVLLSKKGQSP----VGFVHFAKRSDLDNAIKEMNEKTV-QGPSRGPAFKLQVAVAKPL 232
Query: 458 QR 459
R
Sbjct: 233 DR 234
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 18/292 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+G + +D ++L VF Q+G + RLMM N+G+ F + E ++AV
Sbjct: 103 EVFIGKIPRDCFEEELIPVFEQIGPIYMFRLMME-FNGTNRGYGFCVYTNREDTKKAVQA 161
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K T+E + ++K + V+D+ +
Sbjct: 162 LDNYEIRKGKTIGVCFSVDNCRLFVGGIPKNKTREEIMAEMKRV-TEGVKDVISYPSVTD 220
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ NRGFAF+E+ S A A ++L + ++ V +A+ + ++IM++VK +
Sbjct: 221 KSKNRGFAFVEYESHKAAAMARRKLMPGKIQLW-NQQIAVDWAEPEREVNEDIMSKVKIL 279
Query: 377 FVDGLPASWDEDRVRE--LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434
+V L S ED +RE + G+ IE + K D+ F+ F + A C ++
Sbjct: 280 YVRNLMLSTTEDGLREHFVCAAGGDPNCIERVK-----KISDYAFIHFKEREQAARCLEA 334
Query: 435 INNAELGEGDNKAKVRARLSRPLQRGKG---KHASRGDFRSGRGTGRATRGS 483
+N+ + + +K+ ++P+ + + + ++ G + G+ R +
Sbjct: 335 LNDTLI----DGSKIEVTWAKPVDKTEANARQQSNSGKLLNDLALGKDIRAN 382
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 142/306 (46%), Gaps = 38/306 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--EVRLMMNPQTKKNKGFAFLRFATVE 249
+K+ E F+G L +D D+ + +V E T E+RLMM K++GFAF+ F
Sbjct: 205 KKKNNGECFIGSLHRDAFEPDIWTLLEEVPEATVYEIRLMMG-YDGKSRGFAFVSFVEDG 263
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
A++ L K+ V S + +F+G+I K +K+ +E+L + GV
Sbjct: 264 AAQRCKALLDTKQFMEKKLHVNVSIPATRIFIGSIPKDKSKQQFEEELTNNGVST----W 319
Query: 310 LVEDS--NNEGMNRGFAFLEFSSRSDA--------------MDAFKR--LQKRDVLFGVD 351
+V S +N NRGFAF+EF S DA + FK+ L + LFG
Sbjct: 320 VVNQSQKDNGASNRGFAFVEFESHMDASTVKVQSFNKLHLFYECFKKNLLNRSLALFG-R 378
Query: 352 RPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
V +AD P D +M+ VK ++V G + E+ ++ L + YG + K++
Sbjct: 379 YYQNVDWADPENTPDDNVMSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKVK------- 431
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRG-KGKHASRGDF 470
K +F FV F D+A+ +++N G N + L++P + K K R +
Sbjct: 432 -KINNFSFVHFVERDSALKAIEAMNGKNFG---NDEVIDVSLAKPNDKNLKAKKMQRMNQ 487
Query: 471 RSGRGT 476
R+ +G
Sbjct: 488 RNQQGN 493
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 125
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 183
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 184 AQDEN--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 237
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A +++ + +D R+L +G++T LAR+ K + FGFV F TH
Sbjct: 238 -EEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQ-EGKSRGFGFVNFTTH 295
Query: 426 DAAVTCAKSIN 436
+AA +N
Sbjct: 296 EAAAKAVDDLN 306
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K +++ + +V D+ R +F+ G+VT L + Q K++GF F
Sbjct: 232 DRQSKFEEM-KANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARD-QEGKSRGFGF 289
Query: 243 LRFATVEQARQAVTEL 258
+ F T E A +AV +L
Sbjct: 290 VNFTTHEAAAKAVDDL 305
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 168
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 169 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 220
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ + E+ REL + +GEIT L+R+ K + FGFV F T
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 279
Query: 425 HDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 280 HESAQAAVDEMNEKEI 295
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 132 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 190
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI + T+E +E
Sbjct: 191 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELF 250
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D EG +RGF F+ FS+ A A + ++++ + V
Sbjct: 251 EKFG--EITSATLSRD--QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIR---TQKLYVG 303
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++REL YG IT +
Sbjct: 304 RAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAK 363
Query: 405 LARN 408
+ R+
Sbjct: 364 VMRD 367
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V++ +D+DV ++ R++F + GE+T L + Q K++GF F
Sbjct: 217 DRQSKFEEM-KANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD-QEGKSRGFGF 274
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F+T E A+ AV E+ I ++ V +Q
Sbjct: 275 VNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQ 306
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKALEEL 120
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 179 AQDEN--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 232
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + ED REL + +G++T LAR+ K + FGFV F TH
Sbjct: 233 -EEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQ-EGKSRGFGFVNFTTH 290
Query: 426 DAAVTCAKSIN 436
++A +N
Sbjct: 291 ESASKAVDDLN 301
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 179 AQDEN--GNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKK-DRQSKF--- 232
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + ++ R+L + +G++T LAR+ K + FGFV F TH
Sbjct: 233 -EEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQ-EGKTRGFGFVNFTTH 290
Query: 426 DAAVTCAKSIN 436
+AA + +N
Sbjct: 291 EAAFKAVEELN 301
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V + DV +D R++F + G+VT L + Q K +GF F+ F T E
Sbjct: 233 EEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARD-QEGKTRGFGFVNFTTHE 291
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
A +AV EL G+ V +Q + K++ L++ K+ GV N+
Sbjct: 292 AAFKAVEELNGKDFRGQDLYVGRAQKKHER-EEELRKSYEAARLEKANKYQGV-NLYIKN 349
Query: 310 LVEDSNNEGMNRGFA 324
L +D ++E + + FA
Sbjct: 350 LDDDVDDEKLRQMFA 364
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 121/256 (47%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G+++G+ F+ + + A +A K + G+ K F I D
Sbjct: 162 AQDEF--GVSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 213
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A +++ + +++ R+L + +GEIT L+R+ K + FGFV F T
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFST 272
Query: 425 HDAAVTCAKSINNAEL 440
H++A + +N+ E+
Sbjct: 273 HESAQAAVEEMNDKEV 288
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAA 183
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI E ++
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL DS EG +RGF F+ FS+ A A + + ++V + V
Sbjct: 244 EKFG--EITSATLSRDS--EGKSRGFGFVNFSTHESAQAAVEEMNDKEVR---SQKLYVG 296
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D+D++REL YG IT +
Sbjct: 297 RAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAK 356
Query: 405 LARN 408
+ R+
Sbjct: 357 VMRD 360
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E +++ +D +V ++ RK+F + GE+T L + + K+
Sbjct: 204 HHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEG-KS 262
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+T E A+ AV E+ + + ++ V +Q
Sbjct: 263 RGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQ 299
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 125
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 183
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 184 AQDEH--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 237
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D R+L +G++T LAR+ K + FGFV F TH
Sbjct: 238 -EEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQ-EGKSRGFGFVNFTTH 295
Query: 426 DAAVTCAKSIN 436
+AA +N
Sbjct: 296 EAAAKAVDDLN 306
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 22/254 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 175 AQDEF--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V L + REL + YGEIT ++R+ + K + FGF F H
Sbjct: 229 -EEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKH 287
Query: 426 DAAVTCAKSINNAE 439
++A + +N+ E
Sbjct: 288 ESAAAAVEELNDKE 301
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 113/264 (42%), Gaps = 38/264 (14%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V+V LD +V ++ R++F + GE+T + + +T K+
Sbjct: 217 HHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKS 276
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL 297
+GF F F E A AV EL + G++ L++G K +E +E
Sbjct: 277 RGFGFFYFLKHESAAAAVEELNDKEYKGQK-----------LYVGRAQKKHERE--EELR 323
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
K + VE + S +G+N L + +D +D ++L+ + FG A+V
Sbjct: 324 KQHEAARVE-----KASKYQGVN-----LYVKNLTDDIDD-EKLRDLFISFGNITSARV- 371
Query: 358 FADSFIDPGDEI-----MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
D+ DPG E A + V + S +ED + K +K + +
Sbjct: 372 MRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSDKVEKSDSKNATEKKL--G 429
Query: 413 KRKDFGFVTFDTHDAAVTCAKSIN 436
K K FGFV F D A +N
Sbjct: 430 KSKGFGFVCFSNPDEASKAVTEMN 453
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 130/269 (48%), Gaps = 33/269 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L KDV L ++FSQVG V +R+ + T+++ G+A++ F V A +A+ +
Sbjct: 44 LYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTM 103
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I + C + SQ +L F+ N+ +T +AL + +G N+ +
Sbjct: 104 NFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFG--NILSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
D + G ++G+ ++ + A A ++ G+ K F+ +
Sbjct: 162 ATD--DAGESKGYGYVHYEGGVSANMAIAKIN------GMLIAGKQVHVGHFVRRDNRAG 213
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEIT--KIELA------------RNMPSAKRK 415
A ++V GLP+SWD+ ++RE + +G +T K+++A K +
Sbjct: 214 QADWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSR 273
Query: 416 DFGFVTFDTHDAAVTCAKSINNAELGEGD 444
FGFV F+ H++AV +++NNAE+ +G+
Sbjct: 274 GFGFVNFEEHESAVKAIEALNNAEMPDGE 302
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 36/277 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD+ V L FS G + ++ + ++KG+ ++ + A A+ ++
Sbjct: 132 IFVKNLDETVDNKALYDTFSLFGNILSCKVATD-DAGESKGYGYVHYEGGVSANMAIAKI 190
Query: 259 KNPVINGKQCGV---------TPSQDSDTLFLGNICKTWTKEALKEKL-KHYGVDNVE-- 306
+I GKQ V D L++ + +W L+E+ KH V + +
Sbjct: 191 NGMLIAGKQVHVGHFVRRDNRAGQADWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQ 250
Query: 307 --------DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV--------LFGV 350
D + + EG +RGF F+ F A+ A + L ++ L+
Sbjct: 251 VAPQEGQGDESKEKGKGGEGKSRGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCA 310
Query: 351 DRPAKVSFADSFIDPGDEIMA------QVKTVFVDGLPASWDEDRVRELLKNYGEITKIE 404
K A D++ Q V+V L ED +RE YG IT
Sbjct: 311 RAQKKSERARELQSKHDQVKMERMNKFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSAR 370
Query: 405 -LARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
+ N + + K FGFV F + A +N L
Sbjct: 371 VMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGKML 407
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 26/169 (15%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V++++ E+ + ++ + N E +P+ G
Sbjct: 275 FGFVNFEEHESAVKAIEALNNAE-----------------------MPDGEGTTTLYCAR 311
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
A +++ER + ++ HD +M + K + V+V LD+ V D +R+ F+ G +T
Sbjct: 312 AQKKSERARELQSK-HDQVKM-ERMNKFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSA 369
Query: 227 RLMM-NPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
R+M+ N ++KGF F+ F+ E+A +A+TE+ ++ K V +Q
Sbjct: 370 RVMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQ 418
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 110 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG--NILSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 168 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 219
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ L E+ R++ + +GEIT L+R+ K + FGFV + T
Sbjct: 220 KFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQ-EGKSRGFGFVNYST 278
Query: 425 HDAAVTCAKSINNAEL 440
HD+A +N+ E+
Sbjct: 279 HDSAQAAVDEMNDKEV 294
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 131 RKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 189
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ N+ + ++E ++
Sbjct: 190 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMF 249
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D EG +RGF F+ +S+ A A + ++V + V
Sbjct: 250 EKFG--EITSATLSRD--QEGKSRGFGFVNYSTHDSAQAAVDEMNDKEV---KGQKLYVG 302
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++RE+ YG IT +
Sbjct: 303 RAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAK 362
Query: 405 LARN 408
+ R+
Sbjct: 363 VMRD 366
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V++ LD+++ ++ R++F + GE+T L + Q K++GF F
Sbjct: 216 DRQSKFEEM-KANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRD-QEGKSRGFGF 273
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGV 302
+ ++T + A+ AV E+ + + G++ V +Q + K + L++ K+ GV
Sbjct: 274 VNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHER-EEELRKQYEAARLEKASKYQGV 332
Query: 303 DNVEDLTLVEDSNNEGMNRGFA 324
N+ L +D ++E + FA
Sbjct: 333 -NLYVKNLTDDIDDEKLREMFA 353
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS VG+V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 63 LYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
D G ++G+ F+ + + A A K L ++ V G P K +
Sbjct: 181 AVDE--LGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKF---- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D REL + YGEIT LA + + K + FGFV + H
Sbjct: 235 -EEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINH 293
Query: 426 DAAVTCAKSINNAEL 440
+ A +N+++
Sbjct: 294 EDAYKAVDELNDSDF 308
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V ++ +V D+ R++F + GE+T L + +T K++GF F+ + E
Sbjct: 235 EEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHE 294
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL + +G++ V +Q
Sbjct: 295 DAYKAVDELNDSDFHGQKLYVGRAQ 319
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
T +S +L++G + + T+ L E G V + + D+ + G+A++ ++S
Sbjct: 55 TAHPNSASLYVGELDPSVTEAMLFELFSSVG--QVASIRVCRDAVTR-RSLGYAYVNYNS 111
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
+D A + L + RP ++ ++ DP VF+ L + D +
Sbjct: 112 ANDGERALEEL---NYTLIKGRPCRIMWSQR--DPALRKTGH-GNVFIKNLDGAIDNKAL 165
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+ +G I ++A + K +GFV ++T +AA KS+N L E
Sbjct: 166 HDTFAAFGNILSCKVAVD-ELGNSKGYGFVHYETAEAASQAIKSVNGMLLNE 216
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 121/255 (47%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + E +A+ EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG--NILSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G P K +
Sbjct: 168 AQDE--LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---- 221
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ REL + +G+IT +AR+ K + FGFV + H
Sbjct: 222 -EEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKH 279
Query: 426 DAAVTCAKSINNAEL 440
+AA ++N+ +
Sbjct: 280 EAASAAVDALNDTDF 294
>gi|414870190|tpg|DAA48747.1| TPA: hypothetical protein ZEAMMB73_016759 [Zea mays]
Length = 518
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+ VK VF+DG+P WDED+VRE+ +GEI I+LARNM +A RKDFGF+ F + +
Sbjct: 140 LYMVKYVFLDGVPPHWDEDKVREIFGKFGEIDIIQLARNMFTAARKDFGFIGFTARQSTL 199
Query: 430 TCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRG 468
C K +N +GEG K +++ L RP K KH+ +G
Sbjct: 200 DCIKMVNKDGVGEGSGKVPIKSSLQRPRHAFK-KHSRQG 237
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 168
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 169 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 220
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ + E+ REL + +GEIT L+R+ K + FGFV F T
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 279
Query: 425 HDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 280 HESAQAAVDEMNEKEI 295
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 132 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 190
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI + T+E +E
Sbjct: 191 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELF 250
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D EG +RGF F+ FS+ A A + ++++ + V
Sbjct: 251 EKFG--EITSATLSRD--QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIR---TQKLYVG 303
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++REL YG IT +
Sbjct: 304 RAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAK 363
Query: 405 LARN 408
+ R+
Sbjct: 364 VMRD 367
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V++ +D+DV ++ R++F + GE+T L + Q K++GF F
Sbjct: 217 DRQSKFEEM-KANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD-QEGKSRGFGF 274
Query: 243 LRFATVEQARQAVTEL 258
+ F+T E A+ AV E+
Sbjct: 275 VNFSTHESAQAAVDEM 290
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 177
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 178 AQDEY--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 231
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R L + YGEIT L+R+ + K + FGFV F H
Sbjct: 232 -EEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 426 DAAVTCAKSINNAEL 440
+AA +++N EL
Sbjct: 291 EAASAAVEALNEYEL 305
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E ++V +++DV ++ R +F + GE+T L + +T K+
Sbjct: 220 HHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS 279
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+ E A AV L + G++ V +Q
Sbjct: 280 RGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQ 316
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 57 LYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 175 AQDEF--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V L + REL YG+IT + + + K + FGFV F H
Sbjct: 229 -EEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKH 287
Query: 426 DAAVTCAKSINNAEL 440
++A + +N+ E
Sbjct: 288 ESAAAAVEELNDKEF 302
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V+V LD V ++ R++F + G++T + + +T K+
Sbjct: 217 HHIAKKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKS 276
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F E A AV EL + G++ V +Q
Sbjct: 277 RGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQ 313
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 57 LYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G AK F
Sbjct: 175 AQDEF--GNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V L + REL YG+IT + + + K + FGFV F H
Sbjct: 229 -EEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKH 287
Query: 426 DAAVTCAKSINNAEL 440
++A + +N+ E
Sbjct: 288 ESAAAAVEELNDKEF 302
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V+V LD +V ++ R++F + G++T + + +T K+
Sbjct: 217 HHIAKKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKS 276
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F E A AV EL + G++ V +Q
Sbjct: 277 RGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQ 313
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 21/233 (9%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+++G + K + D L +F Q G++ ++R+MM+P + NKG+AF+ + A +A +
Sbjct: 215 EIYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAKK 274
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKL-KHYGVDNVEDLTLVEDSN 315
+ I NGK+ V S + LF+GNI K+ KE + E+ K GV N+ D+ + + N
Sbjct: 275 FEGYEIKNGKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSKVSGVQNITDVIMYSNPN 334
Query: 316 N--EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP----AKVSFADSFIDPGDEI 369
+ NRGF FLEF+ A A +RL RP V +A++ D E
Sbjct: 335 DPVNKKNRGFCFLEFADHKSASQAKRRLGSSRF-----RPWMMELVVEWAETQDDVDKET 389
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
M++VK +++ L S E+ +R YG + +++ + KD+ FV F
Sbjct: 390 MSKVKILYLRPLKDSVSEEELRVRFSQYGTVERVK--------RIKDYAFVHF 434
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 121/255 (47%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + E +A+ EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG--NILSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G P K +
Sbjct: 168 AQDE--LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---- 221
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ REL + +G+IT +AR+ K + FGFV + H
Sbjct: 222 -EEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKH 279
Query: 426 DAAVTCAKSINNAEL 440
+AA ++N+ +
Sbjct: 280 EAASAAVDALNDTDF 294
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 31/275 (11%)
Query: 176 MVDAEEHDHHEMFQE---------------RRKRKEFEVFVGGLDKDVVGDDLRKVFSQV 220
+++ H+E+ QE R++ K E+F+G L +D D+L + QV
Sbjct: 8 LLEMLRRTHYELVQENGQRRLTAPEVVRGQRQRGKGAEIFLGRLPRDCYEDELMPLLEQV 67
Query: 221 GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTL 279
G + E+RLM++ + +G+AF + AR+A L I G + GV S D+ L
Sbjct: 68 GRLLELRLMLDF-SGSTRGYAFALYEDPRIAREACERLNGHEIRPGHRIGVVKSMDNCRL 126
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
F G + K TK E+L +D + D+ + ++ N +NRGF F+EF A A +
Sbjct: 127 FFGGVPKNKTKLEFLEELTKI-LDGIVDIYVYPNAQNRSLNRGFIFVEFRDHRAAAMARR 185
Query: 340 RLQKRDVLFGVDRPAKVSFADSFIDPGD----EIMAQVKTVFVDGLPASWDEDRVRELLK 395
+L V+ D V +AD +PGD +IM V +FV L + +V+E++
Sbjct: 186 KLIPGKVMLW-DHEIAVDWADP--EPGDPVDEDIMETVTALFVRNLSIDMPQQKVKEIIY 242
Query: 396 NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
+ + ++L K F F+ +++ +AA T
Sbjct: 243 RHTNVPILKL------KKINHFAFIHYESREAAQT 271
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 120/252 (47%), Gaps = 23/252 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G V+ +R+ + T+++ G+A++ + A +A+ +L
Sbjct: 59 LYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 118
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I K C + SQ +L F+ N+ +T +AL + +G ++ +
Sbjct: 119 NYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG--DILSCKV 176
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVSFADSFIDP 365
DS G ++G+ F+ + + A A K +L + V G+ P + A
Sbjct: 177 AMDST--GASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKI---- 230
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
DE+ A +++ LP + + E+ YG +T + + S K + FGFV ++ H
Sbjct: 231 -DEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADE-SGKHRGFGFVNYENH 288
Query: 426 DAAVTCAKSINN 437
++A +++++
Sbjct: 289 ESASKAVEALHD 300
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/365 (21%), Positives = 146/365 (40%), Gaps = 39/365 (10%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
M+ +R RK + +F+ LD+ + L F+ G++ ++ M+ T +KG+ F
Sbjct: 131 MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVAMD-STGASKGYGF 189
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTW 288
+ + T E A A+ + +N K V P ++ L++ N+
Sbjct: 190 VHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEV 249
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD--- 345
T E L E YG + ++ G +RGF F+ + + A A + L +D
Sbjct: 250 TTEELNEMFSKYG----PVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHDKDYKG 305
Query: 346 -VLFG------VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+L+ V+R A++ A + Q +++ L +D+++++ +G
Sbjct: 306 NILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFG 365
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
IT ++ ++ R FGFV F D A +N LG + R Q
Sbjct: 366 TITSCKVMKDDKGVSR-GFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQRKDVRKQ 424
Query: 459 RGKGKHASRGDFRSGRGTGRATRGS-WGLPSPRSLPGRSAR----GIGSRLPPASVKRPV 513
+ + + + R RS + G+ +G P + G +A G G PP + +
Sbjct: 425 QLEAQMSQRAQMRSQQIAAAGIPGAPYGAPPNQMYYGGAAAYPPPGRGMAYPPNGMPAGM 484
Query: 514 PVRDR 518
P R R
Sbjct: 485 PPRPR 489
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 114
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 115 NYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG--NILSCKV 172
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G +RG+ F+ + + A A K L ++ V G P K +
Sbjct: 173 AQDES--GGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKF---- 226
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D REL + YGEIT LAR+ K + FGFV + H
Sbjct: 227 -EEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQ-EGKVRGFGFVNYIRH 284
Query: 426 DAAVTCAKSINNAEL 440
+ A +N+ +
Sbjct: 285 EDANKAVDELNDIDF 299
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
+S +L++G + + T+ L E G V + + D+ + G+A++ ++S +D
Sbjct: 51 NSASLYVGELDPSVTEAMLFELFSSIG--QVASIRVCRDAVTR-RSLGYAYVNYNSANDG 107
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A + L + +P ++ ++ DP +F+ L A+ D + +
Sbjct: 108 ERALEEL---NYTLIKGKPCRIMWSQR--DPALRKTGH-GNIFIKNLDAAIDNKALHDTF 161
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+G I ++A++ S + +GFV ++T +AA KS+N L E
Sbjct: 162 AAFGNILSCKVAQD-ESGGSRGYGFVHYETAEAANAAIKSVNGMLLNE 208
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 121/256 (47%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G+++G+ F+ + + A +A K + G+ K F I D
Sbjct: 162 AQDEF--GVSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 213
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A +++ + +++ R+L + +GEIT L+R+ K + FGFV F T
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFST 272
Query: 425 HDAAVTCAKSINNAEL 440
H++A + +N+ E+
Sbjct: 273 HESAQAAVEEMNDKEV 288
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAA 183
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI E ++
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL DS EG +RGF F+ FS+ A A + + ++V + V
Sbjct: 244 EKFG--EITSATLSRDS--EGKSRGFGFVNFSTHESAQAAVEEMNDKEVR---SQKLYVG 296
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D+D++REL YG IT +
Sbjct: 297 RAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAK 356
Query: 405 LARN 408
+ R+
Sbjct: 357 VMRD 360
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E NA + + D + H + ++ R+ K FE +++ +D +V
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK-FEEMKANFTNIYIKNIDPEV 234
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
++ RK+F + GE+T L + + K++GF F+ F+T E A+ AV E+ +
Sbjct: 235 EDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMND 285
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 121/256 (47%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G+++G+ F+ + + A +A K + G+ K F I D
Sbjct: 162 AQDEF--GVSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 213
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A +++ + +++ R+L + +GEIT L+R+ K + FGFV F T
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFST 272
Query: 425 HDAAVTCAKSINNAEL 440
H++A + +N+ E+
Sbjct: 273 HESAQAAVEEMNDKEV 288
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAA 183
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI E ++
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL DS EG +RGF F+ FS+ A A + + ++V + V
Sbjct: 244 EKFG--EITSATLSRDS--EGKSRGFGFVNFSTHESAQAAVEEMNDKEVR---SQKLYVG 296
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D+D++REL YG IT +
Sbjct: 297 RAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAK 356
Query: 405 LARN 408
+ R+
Sbjct: 357 VMRD 360
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E NA + + D + H + ++ R+ K FE +++ +D +V
Sbjct: 176 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK-FEEMKANFTNIYIKNIDPEV 234
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
++ RK+F + GE+T L + + K++GF F+ F+T E A+ AV E+ +
Sbjct: 235 EDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMND 285
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 16/235 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D++ ++L VF VG V E+RLMM+ + N+GFAF+ FAT A +A+ +
Sbjct: 28 EVFVGKIPRDLMENELLPVFQTVGPVYEIRLMMD-TNETNRGFAFVTFATPADAGKAIQK 86
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L I G+ GV S D+ LF+G I K ++E + +++ + V + L +
Sbjct: 87 LNRYEIRPGRFIGVIRSMDNCRLFIGGIPKDKSEEEIHKEMSRI-TEGVVRVILYSSVAD 145
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ A+ K L R +L+G + V +A+ +EI+++V+
Sbjct: 146 KKKNRGFAFIEYESHRAAALARRKCLPDRLLLWG--KNVAVDWAEPEPVVEEEILSKVRV 203
Query: 376 VFVDGLPASWDEDRVRELLKNYGE--ITKIELARNMPSAKRKDFGFVTFDTHDAA 428
++V L + E + EL G + K+++ DF F+ F + A
Sbjct: 204 LYVRNLLITTKEKELEELFDTAGNGGVEKVKIL--------NDFAFIHFGSRSQA 250
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT---KKNKGFAFLRFATVEQARQAV 255
+F+GG+ KD +++ K S++ E VR+++ KKN+GFAF+ + + A A
Sbjct: 109 LFIGGIPKDKSEEEIHKEMSRITEGV-VRVILYSSVADKKKNRGFAFIEYESHRAAALAR 167
Query: 256 TELK--NPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGV 302
+ ++ GK V ++ L++ N+ T ++ L+E G
Sbjct: 168 RKCLPDRLLLWGKNVAVDWAEPEPVVEEEILSKVRVLYVRNLLITTKEKELEELFDTAGN 227
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342
VE + ++ D FAF+ F SRS A A LQ
Sbjct: 228 GGVEKVKILND---------FAFIHFGSRSQAQQAMDALQ 258
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 119/255 (46%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFG--NILSCKV 172
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N ++G+ F+ + + A A K L ++ V G P K +
Sbjct: 173 AQDEN--ANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKV---- 226
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + + ++ REL + YG+IT LA + S K + FGFV + H
Sbjct: 227 -EEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRH 285
Query: 426 DAAVTCAKSINNAEL 440
+ A + +N+++
Sbjct: 286 EDAYKAVEELNDSDF 300
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 30/242 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 136 RKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-ENANSKGYGFVHYETAEAA 194
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDS-----------DTLFLGNICKTWTKEALKEKL 297
QA+ + ++N K+ V P +D +++ NI T +E
Sbjct: 195 NQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELF 254
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+ YG ++ +L D N G NRGF F+ + DA A + L D L+ V R
Sbjct: 255 EKYG--DITSASLAHD-NESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLY-VGRA 310
Query: 354 AKVSFADSFIDPGDEIMAQVKT-------VFVDGLPASWDEDRVRELLKNYGEITKIELA 406
K + + E Q K+ ++V L D+D +R++ + YG IT ++
Sbjct: 311 QKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAITSAKVM 370
Query: 407 RN 408
R+
Sbjct: 371 RD 372
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V +D + ++ R++F + G++T L + ++ KN+GF F+ + E
Sbjct: 227 EEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHE 286
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV EL + G++ V +Q
Sbjct: 287 DAYKAVEELNDSDFKGQKLYVGRAQ 311
>gi|351709863|gb|EHB12782.1| Heterogeneous nuclear ribonucleoprotein A3 [Heterocephalus glaber]
Length = 392
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 129/260 (49%), Gaps = 28/260 (10%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++F+GGL + D LR+ F + G +T+ +M +PQTK+++GF F+ ++ VE+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFDFVTYSCVEEGHDP--- 92
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
K P + LF+G + T ++L+E + +G + D ++ D +
Sbjct: 93 -KEP------------EQLRKLFIGGLSFETTDDSLREHFEKWG--TLTDCVVMRDPQTK 137
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
+RGF F+ +S + +DA + V V P + + + PG + VK +F
Sbjct: 138 -RSRGFGFVTYSC-VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLT--VKKIF 193
Query: 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA----AVTCAK 433
V G+ +E +R+ + YG+I IE+ + S K++ F FVTFD HD V
Sbjct: 194 VGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH 253
Query: 434 SIN--NAELGEGDNKAKVRA 451
+IN N E+ + +K ++++
Sbjct: 254 TINGHNCEVKKALSKQEMQS 273
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 129/247 (52%), Gaps = 18/247 (7%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E+++ K E+F+G L +D D+L V +G + E+RLM++ + +G+AF F V+
Sbjct: 48 EKQRVKGAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLDF-SGSTRGYAFASFEDVK 106
Query: 250 QARQAVTELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
AR+A +L I G + GV S D+ LF G + K +KE ++L ++ + D+
Sbjct: 107 TARRACAKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKI-LEGIIDI 165
Query: 309 TLVEDSNNEGMNRGFAFLEFS-SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
L ++++ +NRGF F+EF R+ AM K + R +L+ D V +AD +PGD
Sbjct: 166 YLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLW--DHEIAVDWADP--EPGD 221
Query: 368 ----EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
EIM V +FV L + +VR++ + +I ++L K F FV ++
Sbjct: 222 PIDEEIMESVTALFVRNLSLDMSQQKVRDIFQKNTKIPILKL------KKINHFAFVHYE 275
Query: 424 THDAAVT 430
+ AA T
Sbjct: 276 SRQAAQT 282
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 33/261 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + TKK+ G+A++ F + QA+ +L
Sbjct: 53 LYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDL 112
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ +L F+ N+ +AL + +G L+
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFG----RILSC 168
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 169 KVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKF---- 224
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A VFV L + + ++EL YG IT L +++ K K FGFV
Sbjct: 225 ------EEMKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDL-EGKSKGFGFV 277
Query: 421 TFDTHDAAVTCAKSINNAELG 441
FD H+ AV +NN E+
Sbjct: 278 NFDNHNDAVKAVDELNNKEIA 298
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K VFV L + +L+++FS G +T L + + K +KGF F+ F
Sbjct: 225 EEMKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGK-SKGFGFVNFDNHN 283
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV EL N I G+ V +Q LF+ N+
Sbjct: 284 DAVKAVDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLD 343
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
T E L+ + K +G N+ ++ D +G ++GF F+ FSS +A A + +R
Sbjct: 344 DTIDSEKLENEFKPFG--NITSARVMVDE--QGKSKGFGFVCFSSPEEATKAITEMNQRM 399
Query: 346 V 346
V
Sbjct: 400 V 400
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
++ K + +F+ LD + + L F G +T R+M++ Q K +KGF F+ F++
Sbjct: 326 LEKLSKYQGVNLFIKNLDDTIDSEKLENEFKPFGNITSARVMVDEQGK-SKGFGFVCFSS 384
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
E+A +A+TE+ ++ GK V +Q D
Sbjct: 385 PEEATKAITEMNQRMVEGKPLYVALAQRKDV 415
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 121 NYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 179 AQDET--GASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKK-DRQSKF--- 232
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + ++ REL + YG++T LAR+ K + FGFV F TH
Sbjct: 233 -EEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQ-EGKSRGFGFVNFTTH 290
Query: 426 DAAVTCAKSIN 436
+AA +N
Sbjct: 291 EAAYKAVDELN 301
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V+V + DV ++ R++F + G+VT L + Q K++GF F
Sbjct: 227 DRQSKFEEM-KANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARD-QEGKSRGFGF 284
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F T E A +AV EL G++ V +Q
Sbjct: 285 VNFTTHEAAYKAVDELNGNDFRGQELYVGRAQ 316
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 121/255 (47%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + E +A+ EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG--NILSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G P K +
Sbjct: 168 AQDE--LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---- 221
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D R+L + +G+IT +AR+ K + FGFV + H
Sbjct: 222 -EEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKH 279
Query: 426 DAAVTCAKSINNAEL 440
+AA ++N+ +
Sbjct: 280 EAASAAVDALNDTDF 294
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V +D DV DD R +F + G++T + + Q K++GF F+ + E
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQG-KSRGFGFVNYIKHE 280
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A AV L + G++ V +Q
Sbjct: 281 AASAAVDALNDTDFRGQKLYVGRAQ 305
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 19/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +FS +G V+ +R+ + T + G+A++ F E R+A+ +L
Sbjct: 40 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ S +++ N+ ++L E +G N+ +
Sbjct: 100 NYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG--NILSCKV 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID---PGD 367
D N G++RGF F+ F + SDA DA ++ + + D+ V++ S D +
Sbjct: 158 ATDDN--GVSRGFGFVHFENESDARDA---IEAVNGMLMNDQEVYVAWHVSKKDRQSKLE 212
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
E+ A+ ++V + ++ +L YG+IT L ++ K + FGF+ F+ H
Sbjct: 213 EVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKD-SEGKLRGFGFINFEDHST 271
Query: 428 AVTCAKSINNAEL 440
A +N ++
Sbjct: 272 AARAVDELNESDF 284
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 185 HEMFQERRKRKE------------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP 232
HE QE +K+ E +F+ LD + + L+ F+ G +T V++M +
Sbjct: 298 HERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKD- 356
Query: 233 QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ ++GF F+ F+T E+A +A+TE ++ GK V +Q
Sbjct: 357 EAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQ 398
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K K ++V +D + ++ ++FS+ G++T L + + K +GF F+ F
Sbjct: 212 EEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKL-RGFGFINFEDHS 270
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV EL G+ V +Q LF+ N+
Sbjct: 271 TAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLD 330
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
+ E LK++ +G + + +++D G +RGF F+ FS+ +A A
Sbjct: 331 DSIDDEKLKDEFAPFG--TITSVKVMKDE--AGSSRGFGFVCFSTPEEATKAI 379
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 19/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + T + G+A++ F E +A+ +L
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ S +++ N+ ++L E +G N+ +
Sbjct: 100 NYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG--NILSCKV 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID---PGD 367
D N G++RGF F+ F + SDA DA ++ D + D+ V+ S D +
Sbjct: 158 ATDEN--GVSRGFGFVHFENESDARDA---IEAVDGMLMNDQEVYVALHVSKKDRQSKLE 212
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
E+ A+ V+V + ++ EL YG+IT L ++ K + FGFV F+ H A
Sbjct: 213 EVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAA 271
Query: 428 AVTCAKSINNAEL 440
A +N E
Sbjct: 272 AAKAVDELNELEF 284
Score = 46.2 bits (108), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + + L++ F+ G +T ++M + +T ++GF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQ 274
++ GK V +Q
Sbjct: 383 NQQIVAGKPLYVAIAQ 398
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K K V+V +D++ ++ ++F + G++T L + + K +GF F+ F
Sbjct: 212 EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKL-RGFGFVNFEDHA 270
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDS------------------------DTLFLGNIC 285
A +AV EL G++ V +Q LF+ N+
Sbjct: 271 AAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLD 330
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
+ E LKE+ +G + ++ D G +RGF F+ FS+ +A A ++
Sbjct: 331 DSIDDEKLKEEFAPFG--TITSAKVMRDET--GNSRGFGFVCFSTPEEATKAITEKNQQI 386
Query: 346 VLFGVDRPAKVSFA 359
V +P V+ A
Sbjct: 387 V---AGKPLYVAIA 397
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD ++ L VFS +G ++ +R+ + TK + G+A++ + E ++A+ EL
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
ING+ C + S+ S +F+ N+ +AL E +G V +
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFG--EVLSCKV 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVSFADSFIDP 365
D N G +RGF F+ F SDA DA + + +V + P K I
Sbjct: 170 ALDEN--GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK-----DRISK 222
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E A ++V + ++ +L YGEI L ++ K K FGFV F H
Sbjct: 223 LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDH 281
Query: 426 DAAVTCAKSINNAEL 440
+AA + +N E
Sbjct: 282 NAAAKAVEELNGKEF 296
Score = 45.8 bits (107), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LD + + L++ F+ G +T R+M + Q +KGF F+ F++ E+A +A+TE
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRD-QEGNSKGFGFVCFSSPEEATKAMTEK 394
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 395 NQQIVAGKPLYVAIAQRKDV 414
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 11/233 (4%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L D+ D+L +FSQ G + +RLMM+ + +G+ F+ + T E A AV
Sbjct: 46 EIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAHAAVAA 104
Query: 258 LKNPVINGK-QCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I K + V+ S D+ LF+GNI + T ++ L+ Y V+ + D+ + N
Sbjct: 105 FNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKY-VEGIVDIIFYHEPYN 163
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ +NRGF F+EF S A A ++L ++ ++G +P V +A+ +I+ QV
Sbjct: 164 DSINRGFIFVEFESHRLAAIARRQLSPGNLTIWG--KPIFVDWAEPLPVVNPQILKQVTK 221
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
+++ LP + + ++ L + + I + K +F FV F A
Sbjct: 222 LYLSNLPMTLSSEELKSFLCELLDPSHI-----IKVHKINNFAFVHFTLRKYA 269
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 141/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIKF 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K K+ + ++K + V D+ + ++ +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKDEILNEMKKV-TEGVVDVIVYPNATD 179
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMMSTTEETIKAEFNKFKPGVVERVK--------KLRDYAFVHFFHREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 113 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 170
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+D G ++G+ F+ + + A +A K L + V G DR +K
Sbjct: 171 AQDEF--GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF---- 224
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE+ A +++ + E+ R++ + +GEIT L+R+ P K + FGFV
Sbjct: 225 ------DEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRD-PEGKSRGFGFV 277
Query: 421 TFDTHDAAVTCAKSINNAEL 440
+ TH++A +++ E+
Sbjct: 278 NYSTHESAQAAVDEMHDKEV 297
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 35/252 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 134 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 192
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI T+E ++
Sbjct: 193 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIF 252
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D EG +RGF F+ +S+ A A + ++V + V
Sbjct: 253 EQFG--EITSATLSRDP--EGKSRGFGFVNYSTHESAQAAVDEMHDKEV---KTQKLYVG 305
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++REL YG IT +
Sbjct: 306 RAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAK 365
Query: 405 LARNMPSAKRKD 416
+ R+ A+R +
Sbjct: 366 VMRDSTPAERTE 377
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 15/276 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L V G E+R+M++ N+GF F+ + T ++ A+
Sbjct: 76 EIFIGKLPRDLFEDELYPVLESYGPAFELRMMLD-FNGNNRGFCFVTYQTRNESHAALKG 134
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ N I G+ G S D+ LF+G I K+ ++ + E++K + V D+ + + +
Sbjct: 135 INNLEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEEMKKV-TEGVVDVIVYPSAAD 193
Query: 317 EGMNRGFAFLEFS-SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF+F+E+ ++ AM K + R L+G V +A+ I+ + +M VK
Sbjct: 194 KSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIEVEESVMETVKI 251
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED + IE + K +D+ FV F+T D A+ K +
Sbjct: 252 LYVRNLMLHTSEDTLEAAFAKVTGKGTIERVK-----KIRDYAFVHFNTRDNALKAMKEL 306
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFR 471
NN + + A V L++P+ R SR R
Sbjct: 307 NNGMI----DGALVEVVLAKPVDRDSYVRHSRASER 338
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + E +A+ EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG--NILSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G P K +
Sbjct: 168 AQDE--LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---- 221
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ REL + +G+IT +AR+ K + FGFV + H
Sbjct: 222 -EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVNYIRH 279
Query: 426 DAAVTCAKSINNAEL 440
+AA +N+ E
Sbjct: 280 EAAAVAVDHLNDIEF 294
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V +D DV +D R++F + G++T + + Q K++GF F+ + E
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQG-KSRGFGFVNYIRHE 280
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A AV L + G++ V +Q
Sbjct: 281 AAAVAVDHLNDIEFKGQKLYVGRAQ 305
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG--NILSCKV 171
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 172 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 223
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ + ++ R++ + +GEIT L+R+ K + FGFV F T
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 282
Query: 425 HDAAVTCAKSINNAEL 440
HD+A +N+ E+
Sbjct: 283 HDSAQAAVDEMNDKEI 298
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V++ +D++V ++ RK+F + GE+T L + Q K+
Sbjct: 214 HHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKS 272
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+T + A+ AV E+ + I G++ V +Q
Sbjct: 273 RGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG--NILSCKV 171
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 172 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 223
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ + ++ R++ + +GEIT L+R+ K + FGFV F T
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 282
Query: 425 HDAAVTCAKSINNAEL 440
HD+A +N+ E+
Sbjct: 283 HDSAQAAVDEMNDKEI 298
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E NA + + D + H + ++ R+ K FE V++ +D++V
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK-FEEMKANFTNVYIKNIDQEV 244
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
++ RK+F + GE+T L + Q K++GF F+ F+T + A+ AV E+ + I G++
Sbjct: 245 TDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKL 303
Query: 269 GVTPSQ 274
V +Q
Sbjct: 304 YVGRAQ 309
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 18/247 (7%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E+++ K E+F+G L +D D+L V +G + E+RLM++ + +G+AF F V+
Sbjct: 54 EKQRVKGAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLDF-SGSTRGYAFASFEDVK 112
Query: 250 QARQAVTELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
AR+A +L I G + GV S D+ LF G + K +KE ++L ++ + D+
Sbjct: 113 TARRACAKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKI-LEGIIDI 171
Query: 309 TLVEDSNNEGMNRGFAFLEFS-SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
L ++++ +NRGF F+EF R+ AM K + R +L+ D V +AD +PGD
Sbjct: 172 YLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLW--DHEIAVDWADP--EPGD 227
Query: 368 ----EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
EIM V +FV L + +VR++ + +I ++L K F FV ++
Sbjct: 228 PIDEEIMESVTALFVRNLNLDMSQQKVRDIFQKNTKIPILKL------KKINHFAFVHYE 281
Query: 424 THDAAVT 430
AA T
Sbjct: 282 NRQAAQT 288
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEEL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
D + G ++G+ F+ + + A A K L ++ V G P K +
Sbjct: 175 AVDEH--GNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKF---- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + A +D REL + YG+IT LA + K + FGFV F H
Sbjct: 229 -EEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHD-DQGKVRGFGFVNFIRH 286
Query: 426 DAAVTCAKSINNAEL 440
+ A +N+ +
Sbjct: 287 EDAAKAVDELNDLDF 301
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 256 TELKNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
++ V G G TP+ +S +L++G + + T+ L E G V
Sbjct: 26 NQINTAVPAGGDIGETPTSAAPTNANPNSASLYVGELDPSVTEAMLFELFSSIG--QVAS 83
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+ + D+ + G+A++ ++S +D A + L + +P ++ ++ DP
Sbjct: 84 IRVCRDAVTR-RSLGYAYVNYNSAADGERALEELNYTLI---KGKPCRIMWSQR--DPAL 137
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
Q VF+ L A+ D + + +G I ++A + K +GFV ++T DA
Sbjct: 138 RKTGQ-GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAVD-EHGNSKGYGFVHYETSDA 195
Query: 428 AVTCAKSINNAELGE 442
A KS+N L E
Sbjct: 196 ANQAIKSVNGMLLNE 210
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 58 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 117
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 118 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG--NILSCKV 175
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K +
Sbjct: 176 AQDEH--GNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKF---- 229
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + +D R L + YG+IT LA + K + FGFV + H
Sbjct: 230 -EEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQ-EGKSRGFGFVNYIRH 287
Query: 426 DAAVTCAKSINNAEL 440
+ A + +NN++
Sbjct: 288 EDANKAVEELNNSDF 302
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 29/241 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 139 RKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAA 197
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDS-----------DTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V P +D +++ NI T + +
Sbjct: 198 NSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALF 257
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPA 354
+ YG ++ +L D EG +RGF F+ + DA A + L D V R
Sbjct: 258 EKYG--DITSASLAHDQ--EGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQ 313
Query: 355 KVSFADSFIDPGDEIMAQVKT-------VFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + + E Q K+ ++V L D+D +R++ + YG IT ++ R
Sbjct: 314 KKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAITSAKVMR 373
Query: 408 N 408
+
Sbjct: 374 D 374
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
+S +L++G + + T+ L E G V + + D+ + G+A++ ++S +D
Sbjct: 54 NSASLYVGELDPSVTEAMLFELFSSIG--QVASIRVCRDAVTR-RSLGYAYVNYNSANDG 110
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A + L + +P ++ ++ DP Q VF+ L + D + +
Sbjct: 111 ERALEEL---NYTLIKGKPCRIMWSQR--DPALRKTGQ-GNVFIKNLDGAIDNKALHDTF 164
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+G I ++A++ K +GFV ++T +AA + KS+N L E
Sbjct: 165 AAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAANSAIKSVNGMLLNE 211
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 126/239 (52%), Gaps = 16/239 (6%)
Query: 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTLFL 281
+ E+RLMM+ KN+G+AF+ + +A++AV EL N I G+ G S D+ LF+
Sbjct: 54 IYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGACCSVDNCRLFI 112
Query: 282 GNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAFKR 340
G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ AM K
Sbjct: 113 GGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 171
Query: 341 LQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEI 400
+ R L+G V +A+ ID +++M VK ++V L ED ++ K++G+
Sbjct: 172 MPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK---KSFGQF 226
Query: 401 TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
+ R K +D+ FV F + + AV ++N EL EG + + L++P+ +
Sbjct: 227 NPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-EG---SCLEVTLAKPVDK 278
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 18/248 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD DV L ++F+ V V+ VR+ + T+++ G+A++ + +V A +A+ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 259 KNPVINGKQCGVTPS--------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + + +F+ N+ K+ + L + +G N+ +
Sbjct: 74 NFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFG--NIMSCKI 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
D EG + G+ F+ F A +A RL + G DRP V + E
Sbjct: 132 ATDV--EGKSLGYGFIHFEHADSAKEAISRL--NGAVLG-DRPIYVGKFQKKAERFSEKD 186
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
V+V +P SW ED + ++ YG+I+ + L + +K + FGFV F+ D+A
Sbjct: 187 KTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSD---SKGRPFGFVNFENPDSAKA 243
Query: 431 CAKSINNA 438
+++NA
Sbjct: 244 AVAALHNA 251
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
R+ + VFV LDK + L FS G + ++ + + K+ G+ F+ F + A
Sbjct: 95 RRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVE-GKSLGYGFIHFEHADSA 153
Query: 252 RQAVTELKNPVINGKQCGVTPSQDS-----------DTLFLGNICKTWTKEALKEKLKHY 300
++A++ L V+ + V Q +++ +I K+WT++ L + Y
Sbjct: 154 KEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVY 213
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
G + L L DS R F F+ F + A A L V
Sbjct: 214 G--KISSLVLQSDSK----GRPFGFVNFENPDSAKAAVAALHNALV 253
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 184 HHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
HE +E +R + ++V L + +DLR +F G V+ V + + ++ ++GF F
Sbjct: 349 QHEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTD-ESGVSRGFGF 407
Query: 243 LRFATVEQARQAVTELKNPVINGK 266
+ F + ++A +A+TE+ ++ GK
Sbjct: 408 VSFLSPDEATKAITEMHLKLVRGK 431
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 133/282 (47%), Gaps = 33/282 (11%)
Query: 168 GEEAERPEMVDAEEHDHHEMFQ---------------ERRKRKEFEVFVGGLDKDVVGDD 212
GE +++ + H+E+ Q ER++ K E+F+G L +D D+
Sbjct: 10 GECQRTMRLLELLQRTHYELVQVNGQRRLMAPEVAKGERQRGKGSEIFLGRLPRDCYEDE 69
Query: 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVT 271
L V QVG + E+RLM++ + +G+AF + T AR+A L I G + GV
Sbjct: 70 LMPVLEQVGRLLELRLMLDF-SGSTRGYAFALYETPRIAREACRRLDGYEIRRGHRIGVV 128
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS-S 330
S D+ LF G + K TK +L +D++ D+ L +++ +NRGF F+EF
Sbjct: 129 KSMDNCRLFFGGVPKNKTKPEFMAELTKM-LDDITDIYLYPSAHDRSLNRGFIFVEFKDH 187
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG----DEIMAQVKTVFVDGLPASWD 386
R+ AM K + + L+ D V +AD +PG ++IM +V T+FV L
Sbjct: 188 RAAAMARRKLIPGKVTLW--DHEIAVDWADP--EPGEPIDEDIMERVTTLFVRNLALDIS 243
Query: 387 EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
+ VR + + + ++L K F F+ ++ AA
Sbjct: 244 QQNVRGIFHRHTNVPILKL------KKINHFAFIHYENRQAA 279
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 18/248 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD DV L ++F+ V V+ VR+ + T+++ G+A++ + +V A +A+ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 259 KNPVINGKQCGVTPS--------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + + +F+ N+ K+ + L + +G N+ +
Sbjct: 74 NFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFG--NIMSCKI 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
D EG + G+ F+ F A +A RL + G DRP V + E
Sbjct: 132 ATDV--EGKSLGYGFIHFEHADSAKEAISRL--NGAVLG-DRPIYVGKFQKKAERFSEKD 186
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
V+V +P SW ED + ++ YG+I+ + L + +K + FGFV F+ D+A
Sbjct: 187 KTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSD---SKGRPFGFVNFENPDSAKA 243
Query: 431 CAKSINNA 438
+++NA
Sbjct: 244 AVAALHNA 251
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
R+ + VFV LDK + L FS G + ++ + + K+ G+ F+ F + A
Sbjct: 95 RRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVE-GKSLGYGFIHFEHADSA 153
Query: 252 RQAVTELKNPVINGKQCGVTPSQDS-----------DTLFLGNICKTWTKEALKEKLKHY 300
++A++ L V+ + V Q +++ +I K+WT++ L + Y
Sbjct: 154 KEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVY 213
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
G + L L DS R F F+ F + A A L V
Sbjct: 214 G--KISSLVLQSDSK----GRPFGFVNFENPDSAKAAVAALHNALV 253
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 184 HHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
HE +E +R + ++V L + +DLR +F G V+ V + + ++ ++GF F
Sbjct: 349 QHEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTD-ESGVSRGFGF 407
Query: 243 LRFATVEQARQAVTELKNPVINGK 266
+ F + ++A +A+TE+ ++ GK
Sbjct: 408 VSFLSPDEATKAITEMHLKLVRGK 431
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 15/207 (7%)
Query: 262 VINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
+ +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L +++ NR
Sbjct: 90 IRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNR 148
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDG 380
GF FLE+ A A +RL V ++G V +AD DP E+MA+VK +FV
Sbjct: 149 GFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKVLFVRN 206
Query: 381 LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
L + E+ + + +G++ +++ K KD+ F+ FD D AV + +N +L
Sbjct: 207 LANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL 258
Query: 441 GEGDNKAKVRARLSRPLQRGKGKHASR 467
EG+N V A+ P Q+ K + A R
Sbjct: 259 -EGENIEIVFAK--PPDQKRKERKAQR 282
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K + + + FS+V E +T+V L P KKN+GF FL + + A QA
Sbjct: 107 LFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 166
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVD 303
L + + VT P +D D LF+ N+ T T+E L++ +G
Sbjct: 167 RLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG-- 224
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
+E + ++D +AF+ F R A+ A + + +D+
Sbjct: 225 KLERVKKLKD---------YAFIHFDERDGAVKAMEEMNGKDL 258
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 24/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD+ V L +FSQ+G VT VR+ + T+++ G+ ++ +++ A +A+ L
Sbjct: 40 LYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEAL 99
Query: 259 KNPVINGKQCGVTPSQ-DSDT-------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
INGK + S D T +F+ N+ ++ +AL + +G +
Sbjct: 100 NYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFG-----PILS 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+ ++ +G ++G+ F+ F + A A +++ G+ K F F+ D +
Sbjct: 155 CKIAHQDGRSKGYGFVHFETDEAANLAIEKVN------GMQLVGKKVFVAKFVKRSDRLA 208
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A +T VFV L E+ ++E +G IT + + ++ + K K FGFV FD +
Sbjct: 209 ATGETKFTNVFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKD-ENDKSKGFGFVNFDDPE 267
Query: 427 AAVTCAKSINNAELG 441
AA +++NN++LG
Sbjct: 268 AARAAVETMNNSQLG 282
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 29/267 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LD+ + L F G + ++ Q ++KG+ F+ F T E A
Sbjct: 121 RKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIAH--QDGRSKGYGFVHFETDEAA 178
Query: 252 RQAVTELKNPVINGKQCGV------------TPSQDSDTLFLGNICKTWTKEALKEKLKH 299
A+ ++ + GK+ V T +F+ N+ +E +KE
Sbjct: 179 NLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEIKEHFST 238
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKV 356
+GV + ++ +++D N++ ++GF F+ F A A + + + V R K
Sbjct: 239 FGV--ITNVVIMKDENDK--SKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKK 294
Query: 357 SFADSFI--DPGDEIMAQVK-----TVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
+ + + ++ M Q + ++V L S D++ +++ YG IT ++ R+
Sbjct: 295 AEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRD- 353
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A A N
Sbjct: 354 EKGISKGFGFVCFTSPEEASRAATETN 380
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 33/199 (16%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
E+E+KE + + + +E + + + +G V++DD E V+ + N +
Sbjct: 229 EEEIKEHFSTFGVITNVVIMKDEND-KSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIY 287
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAE-EHDHHEMFQERRKRK 195
VG A ++AER +++ + E E FQ K +
Sbjct: 288 VGR---------------------------AQKKAEREQILRRQFEEKRMEQFQ---KYQ 317
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
++V LD + + L++ FS+ G +T ++M + + +KGF F+ F + E+A +A
Sbjct: 318 GANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRD-EKGISKGFGFVCFTSPEEASRAA 376
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE +INGK V +Q
Sbjct: 377 TETNGLMINGKPIYVAMAQ 395
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 121/255 (47%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + E +A+ EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG--NILSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G P K +
Sbjct: 168 AQDE--LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---- 221
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R+L + +G+IT +AR+ K + FGFV + H
Sbjct: 222 -EEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKH 279
Query: 426 DAAVTCAKSINNAEL 440
+AA ++N+ +
Sbjct: 280 EAASAAVDALNDTDF 294
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 15/248 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG L + + L +V S VG + E+R M+ P + N+G+ F + ++E A++A E
Sbjct: 63 EVFVGKLPRAISDMRLIQVLSAVGPLYELRQMLEP-SGVNRGYCFAVYQSLEGAKRACIE 121
Query: 258 ---LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
L N I G++ GV S D+ LF+G I + + + +++ + + E+L +
Sbjct: 122 SLQLNNVEIEPGRRIGVVRSVDNRRLFIGGIPREIKADQIIAEIRKH-TEGAEELVVYPS 180
Query: 314 SNNEGMNRGFAFLEFSSRSDAMDAFKR-LQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
++ NRGFAF+E+ A A K+ LQ+ +L+G + + +A+ +IM
Sbjct: 181 ILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWG--KTVCIDWAEPEQQVDSDIMEN 238
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
VK ++V L + DE +R+ + G+I IE + K +DF FV F T + A+
Sbjct: 239 VKILYVRNLMLNTDEITLRKYFE-MGDIHCIERVK-----KIRDFAFVHFTTREKALNAL 292
Query: 433 KSINNAEL 440
+N+ +L
Sbjct: 293 NKLNHTKL 300
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 17/270 (6%)
Query: 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQA 254
++ E+++G + D + D+L + G++ E+RLM++P + N+G+AFL + T E A Q
Sbjct: 33 QDCEIYIGKIPHDALEDELIPLLQTCGKIYELRLMIDPASGHNRGYAFLSYTTKEAANQC 92
Query: 255 VTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
V I K V S + LF+ I K KE + K D + ++ + D
Sbjct: 93 VRRYHGYSIRKDKPLTVIHSTPNVRLFISPIPKYMNKEEIYNKFSKLS-DGLTEVIVYPD 151
Query: 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMA-Q 372
+ + RGFAFLE+ A A ++L V + V +A+S +P D ++ +
Sbjct: 152 PDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLS-GKVINVEWAESSKEPKDHVVGNK 210
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
VK V+ + ED + YG I +I+ K D+ F+ F + ++A+
Sbjct: 211 VKEVYCGNIAEHITEDTLNTAFLQYGSIERIK--------KLHDYAFICFASRESALKAI 262
Query: 433 KSINNAELGEGDNKAKVRARLSR-PLQRGK 461
+ + G N KV +L++ P+++ K
Sbjct: 263 EGVR----GTVINGCKVDVQLAKGPVRKEK 288
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V DL + FS +G V +R+ + TK++ G+ ++ F + +A+ EL
Sbjct: 54 LYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEEL 113
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G +C + SQ S +F+ N+ + L + +G V +
Sbjct: 114 NYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFG--KVLSCKV 171
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
D N G ++GF F+ + S A A + L R++ G AK F
Sbjct: 172 ATDEN--GNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVG-PHLAKKDRESRF--- 225
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
E++ VFV ED +REL ++YG IT I L + K FGFV F H
Sbjct: 226 -QEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVD-SEGHNKGFGFVNFAEH 283
Query: 426 DAAVTCAKSINNAE 439
D AV +++N+ E
Sbjct: 284 DDAVKAVEALNDKE 297
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 33/201 (16%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D FQE K VFV D + D+LR++F G +T + L ++ + NKGF F
Sbjct: 220 DRESRFQEMIKNYT-NVFVKNFDTESTEDELRELFESYGPITSIHLQVDSE-GHNKGFGF 277
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQ------------------------DSDT 278
+ FA + A +AV L + GK V +Q S
Sbjct: 278 VNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVN 337
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+ N+ ++ L+E+ K +G + L E+ G +RGF F+ S+ +A A
Sbjct: 338 LFIKNLDESIDDARLEEEFKPFGTITSAKVMLDEN----GKSRGFGFVCLSTPEEATKAI 393
Query: 339 KRLQKRDVLFGVDRPAKVSFA 359
+ +R V ++P V+ A
Sbjct: 394 SEMNQRMV---ANKPLYVALA 411
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 175 EMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT 234
E+ E D E Q K + +F+ LD+ + L + F G +T ++M++ +
Sbjct: 317 ELTKKYEADRLEKLQ---KYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLD-EN 372
Query: 235 KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
K++GF F+ +T E+A +A++E+ ++ K V +Q
Sbjct: 373 GKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQ 412
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 22/253 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L VF+QVG+V VR+ + T+++ G+ ++ + + + A +A+ L
Sbjct: 39 LYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDIL 98
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
N K + S + +F+ N+ KT +AL + +G N+ +
Sbjct: 99 NFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFG--NILSCKV 156
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G +RG+ F++F + A +A +L G+ K + F+ +
Sbjct: 157 ATDSS--GQSRGYGFVQFDNEEAAQNAIDKLN------GMLLNDKQVYVGHFLRKHERDS 208
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A K V+V L S E+ ++ + YGEIT + R+ K K FGFV F+ DA
Sbjct: 209 ASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRD-ADGKSKCFGFVNFENTDA 267
Query: 428 AVTCAKSINNAEL 440
A +S+N ++
Sbjct: 268 AAKAVESLNGKKI 280
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 120/268 (44%), Gaps = 31/268 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + + +++G+ F++F E A
Sbjct: 120 RKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-SSGQSRGYGFVQFDNEEAA 178
Query: 252 RQAVTELKNPVINGKQCGV-----------TPSQDSDTLFLGNICKTWTKEALKEKLKHY 300
+ A+ +L ++N KQ V ++ + +++ N+ ++ T+E LK Y
Sbjct: 179 QNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEY 238
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVS 357
G + ++ D+ +G ++ F F+ F + A A + L + + + V + K S
Sbjct: 239 G--EITSAVIMRDA--DGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKS 294
Query: 358 ---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN 408
F S + D+ Q +++ L S ++ ++EL ++G IT ++ R+
Sbjct: 295 ERELELKSQFEQSMKEAVDKY--QGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRD 352
Query: 409 MPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
PS + GFV F T + A +N
Sbjct: 353 -PSGISRGSGFVAFSTPEEASRALAEMN 379
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 36/227 (15%)
Query: 161 EEEVENAGEEAERPEMVDAEEHDHHEMFQERR---KRKEFE-VFVGGLDKDVVGDDLRKV 216
EE +NA ++ + D + + H + + R K+F V+V L + +DL+ +
Sbjct: 175 EEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNI 234
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
F + GE+T ++M K+K F F+ F + A +AV L I+ K+ V +Q
Sbjct: 235 FGEYGEITSA-VIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKK 293
Query: 277 D------------------------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
L++ N+ + + E LKE +G+ + ++
Sbjct: 294 SERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGM--ITSCKVMR 351
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
D + G++RG F+ FS+ +A A + + V V +P V+ A
Sbjct: 352 DPS--GISRGSGFVAFSTPEEASRALAEMNGKMV---VSKPLYVALA 393
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +++ LD + ++L+++FS G +T ++M +P + ++G F+ F+T E+A
Sbjct: 314 KYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDP-SGISRGSGFVAFSTPEEAS 372
Query: 253 QAVTELKNPVINGKQCGVTPSQ 274
+A+ E+ ++ K V +Q
Sbjct: 373 RALAEMNGKMVVSKPLYVALAQ 394
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 18/245 (7%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E+++ K E+F+G L +D D+L + VG + E+RLM++ + +G+AF F +
Sbjct: 50 EKQRVKGAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDF-SGSTRGYAFALFENSK 108
Query: 250 QARQAVTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
AR A +L I +G + GV S D+ LF G + K KE ++L ++ + D+
Sbjct: 109 IARSACAKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKI-LEGIIDI 167
Query: 309 TLVEDSNNEGMNRGFAFLEFS-SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
L ++++ +NRGF F+EF R+ AM K + R +L+ D V +AD +PGD
Sbjct: 168 YLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLW--DHEIAVDWADP--EPGD 223
Query: 368 ----EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
E+M V +FV L + + ++R++ + +I ++L K F FV ++
Sbjct: 224 PIDEEVMENVTALFVRNLSLNMPQQKIRDIFQKNTKIPILKL------KKINHFAFVHYE 277
Query: 424 THDAA 428
AA
Sbjct: 278 NRKAA 282
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 128/279 (45%), Gaps = 36/279 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + ++ +A+ +L
Sbjct: 40 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQL 99
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 100 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFG--NVLSCKV 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
D N G +RG+ F+ + + A A + L + V G +R AK+
Sbjct: 158 ATDEN--GNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKI---- 211
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE +Q VF+ L S D+++ +++L+ YGEI + ++ + FGFV
Sbjct: 212 ------DEQKSQFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKD-EQGNSRGFGFV 264
Query: 421 TFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
+ H+ A +S+N E+ D K AR + +R
Sbjct: 265 NYKNHEEAAKAVESLNEVEV---DGKKIFAARAQKKNER 300
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 38/206 (18%)
Query: 184 HHEMFQERR-----KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH +ER+ ++ +F VF+ LD V + +++ GE+ + + Q +
Sbjct: 200 HHVSKKERQAKIDEQKSQFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGN-S 258
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSD-------------------- 277
+GF F+ + E+A +AV L ++GK+ +Q +
Sbjct: 259 RGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAK 318
Query: 278 ----TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333
L++ N+ + E L + + +G + ++ D +G ++GF F+ FSS +
Sbjct: 319 YAGVNLYVKNLDDDFDDERLVGEFEPFGT--ITSAKIMRDE--KGTSKGFGFVCFSSPDE 374
Query: 334 AMDAFKRLQKRDVLFGVDRPAKVSFA 359
A A L + + G +P VS A
Sbjct: 375 ATKAVSELSGK--MIG-SKPLYVSLA 397
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V LD D + L F G +T ++M + + +KGF F+ F++ ++A +AV+EL
Sbjct: 324 LYVKNLDDDFDDERLVGEFEPFGTITSAKIMRD-EKGTSKGFGFVCFSSPDEATKAVSEL 382
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+I K V+ +Q D
Sbjct: 383 SGKMIGSKPLYVSLAQRRDV 402
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 18/245 (7%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E+++ K E+F+G L +D D+L + VG + E+RLM++ + +G+AF F +
Sbjct: 39 EKQRVKGAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDF-SGSTRGYAFALFENSK 97
Query: 250 QARQAVTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
AR A +L I +G + GV S D+ LF G + K KE ++L ++ + D+
Sbjct: 98 IARSACAKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKI-LEGIIDI 156
Query: 309 TLVEDSNNEGMNRGFAFLEFS-SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
L ++++ +NRGF F+EF R+ AM K + R +L+ D V +AD +PGD
Sbjct: 157 YLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLW--DHEIAVDWADP--EPGD 212
Query: 368 ----EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
E+M V +FV L + + ++R++ + +I ++L K F FV ++
Sbjct: 213 PIDEEVMENVTALFVRNLSLNMPQQKIRDIFQKNTKIPILKL------KKINHFAFVHYE 266
Query: 424 THDAA 428
AA
Sbjct: 267 NRKAA 271
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 32/290 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L + L FSQ G V +R+ + T+++ G+A++ F E A +A+ +
Sbjct: 13 LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+ GK + SQ L F+ N+ KT + L + +G N+ L+
Sbjct: 73 NFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFG--NI--LSC 128
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
+ N G ++G+ F+ F + A+ A ++L G+ K F F G+ +
Sbjct: 129 KVNVNLAGESKGYGFVHFETEEAAVKAIEKLD------GMLMNDKKVFVGRFKSRGERVR 182
Query: 370 -----MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
Q VF+ LPA WD+ ++ E+ +G + + LA + + K + FGFV+F+T
Sbjct: 183 EYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATD-ENGKSRQFGFVSFET 241
Query: 425 HDAAVTCAKSINNAE-------LGEGDNKAKVRARLSRPLQRGKGKHASR 467
H+ A + +++ E +G KA+ +A L ++ K + R
Sbjct: 242 HECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQR 291
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + ++ +N ++KG+ F+ F T E A +A+ +L
Sbjct: 101 IFIKNLDKTIDNKMLYDTFSAFGNILSCKVNVN-LAGESKGYGFVHFETEEAAVKAIEKL 159
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N K+ V ++ +F+ N+ W L E +G +
Sbjct: 160 DGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHG--S 217
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD-----VLFG-----VDRPA 354
V + L D N G +R F F+ F + A ++L ++ + G +R A
Sbjct: 218 VMSVALATDEN--GKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQA 275
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEIT--KIELARNMPSA 412
++ + Q ++V L S +D +RE YG IT K+ ++
Sbjct: 276 ELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGT 335
Query: 413 KRKDFGFVTFDTHDAAVTCAKSIN 436
+ K FGFV F + + A +N
Sbjct: 336 RSKGFGFVCFTSAEEATKAVTEMN 359
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query: 104 PEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN---VGEEEEDDLAEGEMEDVPEEHGQG 160
P E+ + EH V V DE+ E + AE +E + ++ +G
Sbjct: 200 PAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEG 259
Query: 161 EEE-VENAGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFS 218
++ V A ++AER + + ++ ER +R + ++V LD + D LR+ F+
Sbjct: 260 KKIFVGRAQKKAERQAELKVK---FEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFA 316
Query: 219 QVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
G +T ++M + + ++KGF F+ F + E+A +AVTE+ +I K V +Q
Sbjct: 317 PYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRK 376
Query: 277 D 277
D
Sbjct: 377 D 377
>gi|298709522|emb|CBJ48537.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 579
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 38/270 (14%)
Query: 198 EVFVGGLDKDVVGDDLRKVFS-QVGEVTEVRLMMNPQTK-KNKGFAFLRFATVEQARQAV 255
E+F+ L + ++KV Q GEV +R+MM + K G A +RF + A +A+
Sbjct: 251 EIFIDNLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHAARAL 310
Query: 256 TELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTK------------------------- 290
L + + S +++TLF+GN+ KTWTK
Sbjct: 311 ERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKMDKQLLTARPSGNPNTLFIGGLNRT 370
Query: 291 ----EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
LKE K VD + + + D+ N+ +NRGF F F A + K D
Sbjct: 371 WKKETVLKEFEKE--VDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYK-DK 427
Query: 347 LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELA 406
L ++ + +A++ + D+ + V++ GL DE +R+ +YG I K+ +
Sbjct: 428 LTILENKVLIDWAETRGNKQDD----ERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVG 483
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ +A+RKDF + + +AA TC +S++
Sbjct: 484 NQVGTAQRKDFAIINYSAAEAAKTCIESMH 513
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 122/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + TKK+ G+A++ + E +A+ EL
Sbjct: 65 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDEL 124
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
++ G+ C + SQ + +F+ N+ +AL + +G L+
Sbjct: 125 NYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----RILSC 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 181 KVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKF---- 236
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A ++V + + E EL YG+IT I L ++ K K FGFV
Sbjct: 237 ------EEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQ-DGKSKGFGFV 289
Query: 421 TFDTHDAAVTCAKSINNAEL 440
++ H +AV +++N+ E+
Sbjct: 290 NYEEHKSAVDAVEALNDKEI 309
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 111/265 (41%), Gaps = 36/265 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ L + L FS G + ++ + ++K F F+ + T E A A+ +
Sbjct: 153 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-DMGQSKCFGFVHYETGEAAEAAIENV 211
Query: 259 KNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +D ++ +++ NI +T++ +E YG
Sbjct: 212 NGMLLNDREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYG--K 269
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364
+ + L +D +G ++GF F+ + A+DA + L +++ + V A +
Sbjct: 270 ITSIYLEKDQ--DGKSKGFGFVNYEEHKSAVDAVEALNDKEI---NGQKIYVGRAQKKRE 324
Query: 365 PGDEIMAQVKTV-------------FVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+E+ Q + + F+ L D +++ E K +G IT ++ + +
Sbjct: 325 RTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DA 383
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSIN 436
K K FGFV F T + A +N
Sbjct: 384 GKSKGFGFVCFSTPEEATKAITEMN 408
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LD + + L + F G +T ++M++ K+KGF F+ F+T E+A +A+TE+
Sbjct: 349 LFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSKGFGFVCFSTPEEATKAITEM 407
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+INGK V +Q D
Sbjct: 408 NQRMINGKPLYVALAQRKDV 427
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V +D + ++F+ G++T + L + Q K+KGF F+ + +
Sbjct: 237 EEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKD-QDGKSKGFGFVNYEEHK 295
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A AV L + ING++ V +Q LF+ N+
Sbjct: 296 SAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLD 355
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
E L+E+ K +G + +V+D+ G ++GF F+ FS+ +A A + +R
Sbjct: 356 DQIDSEKLEEEFKPFGTITSAKV-MVDDA---GKSKGFGFVCFSTPEEATKAITEMNQRM 411
Query: 346 V 346
+
Sbjct: 412 I 412
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 132/255 (51%), Gaps = 22/255 (8%)
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSDTLFLGNI 284
+R+MM+ N+G+AF+ F+ +A+ A+ +L N I NG+ GV S D+ LF+G I
Sbjct: 1 MRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGI 59
Query: 285 CKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAFKRLQK 343
KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM K L
Sbjct: 60 PKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPG 118
Query: 344 RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEIT 401
R L+G V +A+ ++ ++ M+ VK ++V L S E+ + + N G +
Sbjct: 119 RIQLWG--HGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE 176
Query: 402 KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGK 461
+++ K +D+ FV F + AV K++N G+ + + + L++P+ +
Sbjct: 177 RVK--------KIRDYAFVHFSNREDAVEAMKALN----GKVLDGSPIEVTLAKPVDKDS 224
Query: 462 GKHASRGDFRSGRGT 476
+RG GRGT
Sbjct: 225 YVRYTRGT--GGRGT 237
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 124/260 (47%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V +R+ + +KK+ G+A++ + +E +A+ EL
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+ G+ C + SQ + +F+ N+ +AL + +G + L++
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----KILSV 184
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+++ G ++ F F+ + + A A + L R+V G DR +K+
Sbjct: 185 KVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL---- 240
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A ++V + ++ E EL +G+IT I L ++ K K FGFV
Sbjct: 241 ------EEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFV 293
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H+AA + +N+ E+
Sbjct: 294 NFEEHEAAAKAVEELNDKEI 313
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 149/387 (38%), Gaps = 58/387 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ L + L FS G++ V++ + ++K F F+ + T E A+ A+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 259 KNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +D ++ +++ NI +T++ +E +G
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFG--K 273
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364
+ + L +D+ EG ++GF F+ F A A + L +++ + V A +
Sbjct: 274 ITSIYLEKDA--EGKSKGFGFVNFEEHEAAAKAVEELNDKEI---NGQKIYVGRAQKKRE 328
Query: 365 PGDEIMAQVKTV-------------FVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+E+ Q + V FV L D +++ E K +G IT ++ + +
Sbjct: 329 RTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DA 387
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINN-------AELGEGDNKAKVRARLSRPLQRGKGKH 464
K K FGFV F T + A +N + K R++L + +Q
Sbjct: 388 GKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ------ 441
Query: 465 ASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSM 524
+R R + GLP P G PP + P P M M
Sbjct: 442 -ARNQMRMQNAA-----AAGGLPGQFMPP--MFYGQQGFFPPNG-RGNAPFPGPNPQMMM 492
Query: 525 TARARPMPPPPPRSYDRRAPVPSYPKP 551
R +P P PR PVP Y P
Sbjct: 493 RGRGQPFPEQWPRPGPNGQPVPVYGMP 519
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 29/181 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V +D + ++F+ G++T + L + + K +KGF F+ F E
Sbjct: 241 EEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGK-SKGFGFVNFEEHE 299
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV EL + ING++ V +Q LF+ N+
Sbjct: 300 AAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLD 359
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
+ E L+E+ K +G + +V+D+ G ++GF F+ FS+ +A A + +R
Sbjct: 360 EQIDSEKLEEEFKPFGTITSSKV-MVDDA---GKSKGFGFVCFSTPEEATKAITEMNQRM 415
Query: 346 V 346
V
Sbjct: 416 V 416
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 22/183 (12%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
G+ G+ +++S +L++G + + + L E G V + + D+ ++ + G+A
Sbjct: 57 GESSGI--AENSASLYVGELNPSVNEATLFEIFSPIG--QVASIRVCRDAVSKK-SLGYA 111
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP-----GDEIMAQVKTVFVD 379
++ + D A + L V RP ++ ++ DP GD +F+
Sbjct: 112 YVNYHKLEDGEKAIEELNYTPV---EGRPCRIMWSQR--DPSARRSGD------GNIFIK 160
Query: 380 GLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439
L + D + + +G+I +++A + + K FGFV ++T +AA +S+N
Sbjct: 161 NLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGML 219
Query: 440 LGE 442
L +
Sbjct: 220 LND 222
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 24/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD+ V L +FSQ+G VT VR+ + T+++ G+ ++ +++ A +A+ L
Sbjct: 39 LYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEAL 98
Query: 259 KNPVINGKQCGVTPSQ-DSDT-------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
INGK + S D T +F+ N+ ++ +AL + +G +
Sbjct: 99 NYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFG-----PILS 153
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+ ++ +G ++G+ F+ F + A A +++ G+ K F F+ D +
Sbjct: 154 CKIAHQDGRSKGYGFVHFETDEAANLAIEKVN------GMQLVGKKVFVAKFVKRSDRLA 207
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A +T VFV L E+ + E +G IT + + ++ + K K FGFV FD +
Sbjct: 208 ATGETKFTNVFVKNLDPEMAEEEINEHFSTFGVITNVVIMKD-ENDKSKGFGFVNFDDPE 266
Query: 427 AAVTCAKSINNAELG 441
AA +++NN++LG
Sbjct: 267 AARAAVETMNNSQLG 281
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 29/267 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LD+ + L F G + ++ Q ++KG+ F+ F T E A
Sbjct: 120 RKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIAH--QDGRSKGYGFVHFETDEAA 177
Query: 252 RQAVTELKNPVINGKQCGV------------TPSQDSDTLFLGNICKTWTKEALKEKLKH 299
A+ ++ + GK+ V T +F+ N+ +E + E
Sbjct: 178 NLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEINEHFST 237
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKV 356
+GV + ++ +++D N++ ++GF F+ F A A + + + V R K
Sbjct: 238 FGV--ITNVVIMKDENDK--SKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKK 293
Query: 357 SFADSFI--DPGDEIMAQVK-----TVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
+ + + ++ M Q + ++V L S D++ +++ YG IT ++ R+
Sbjct: 294 AEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRD- 352
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A A N
Sbjct: 353 EKGISKGFGFVCFTSPEEASRAATETN 379
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
E+E+ E + + + +E + + + +G V++DD E V+ + N +
Sbjct: 228 EEEINEHFSTFGVITNVVIMKDEND-KSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIY 286
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAE-EHDHHEMFQERRKRK 195
VG A ++AER +++ + E E FQ K +
Sbjct: 287 VGR---------------------------AQKKAEREQILRRQFEEKRMEQFQ---KYQ 316
Query: 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
++V LD + + L++ FS+ G +T ++M + + +KGF F+ F + E+A +A
Sbjct: 317 GANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRD-EKGISKGFGFVCFTSPEEASRAA 375
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE +INGK V +Q
Sbjct: 376 TETNGLMINGKPIYVAMAQ 394
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 33/257 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G V +R+ + T+++ G+A++ + A +A+ +L
Sbjct: 86 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 145
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I K C + SQ +L F+ N+ +T +AL + +G + L+
Sbjct: 146 NYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG----DILSC 201
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFAD 360
++ G ++G+ F+ + + A A K +L + V G+ DR AK+
Sbjct: 202 KVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKI---- 257
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE+ +Q +++ LP + + E+ +G IT + + K + FGFV
Sbjct: 258 ------DEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDE-HGKHRGFGFV 310
Query: 421 TFDTHDAAVTCAKSINN 437
++ H++A ++++
Sbjct: 311 NYENHESASKAVDALHD 327
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 147/367 (40%), Gaps = 42/367 (11%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
M+ +R RK + +F+ LD+ + L F+ G++ ++ + + +KG+ F
Sbjct: 158 MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATD-EHGASKGYGF 216
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTW 288
+ + T E A A+ + +N K V P +D L++ N+
Sbjct: 217 VHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTET 276
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD--- 345
T E L E +G + S+ G +RGF F+ + + A A L +D
Sbjct: 277 TTEELNEVFGKFG----PITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKG 332
Query: 346 -VLFGVDRPAKVSFADSFIDPGDE-------IMAQVKTVFVDGLPASWDEDRVRELLKNY 397
VL+ V R K + D+ + E + Q ++V L +D+++++ +
Sbjct: 333 NVLY-VARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPF 391
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457
G IT ++ ++ K FGFV F + D A +N LG + R
Sbjct: 392 GTITSCKVMKDE-KGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRK 450
Query: 458 QRGKGKHASRGDFRSGRGTGRATRGS-WGL-PSPRSLPGRSAR----GIGSRLPPASVKR 511
Q+ + + + R RS + G+ +G P+P G +A G G PP +
Sbjct: 451 QQLEAQMSQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPA 510
Query: 512 PVPVRDR 518
+P R R
Sbjct: 511 GMPPRPR 517
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 178 DAEEHDHHEM--FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK 235
DAE HE ++ K + ++V LD + + L+ F+ G +T ++M + +
Sbjct: 347 DAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKD-EKG 405
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
+KGF F+ F++ ++A +AV E+ NGK G P
Sbjct: 406 TSKGFGFVCFSSPDEATKAVAEM-----NGKMLGSKP 437
>gi|440798060|gb|ELR19131.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 560
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 144/298 (48%), Gaps = 30/298 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV L D D L ++F+ GEV +++LM + + ++ +AF+++++ E+A A+
Sbjct: 127 LFVASLSPDTSEDALHELFATHGEVLKIKLM---KDRSSRPYAFVQYSSTEEANNALLLT 183
Query: 259 KNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG 318
N ++G++ V ++ + TLF+ + ++ T L+E ++ YG VE +T++++ +
Sbjct: 184 NNVALDGRRLRVEKAKVNRTLFIAKMNRSLTNVKLREAVECYG--PVEIVTVIKNHQTQK 241
Query: 319 MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFV 378
++G F++F R DAM A+ L+ + R V +A S DP D + VFV
Sbjct: 242 -SKGCGFVKFVFREDAMAAYLGLKNQ------FRKWVVEWATSSNDP-DVLGVDKYNVFV 293
Query: 379 DGL-PASWDEDRVRELLKNYGEITKIELAR------NMPSAKRKDFGFVTFDTHDAAVTC 431
GL P + + E YG++ + L N + R F FV F ++ +
Sbjct: 294 GGLNPLLVTKAALEERFGAYGQVDAVTLINRDEAQENSMALPRNAFAFVRFRHASSSASA 353
Query: 432 AKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSP 489
+ N AE E ++R + L+ K K ++ F S AT G+ LP P
Sbjct: 354 IEHENGAEWLE----RRIRVQYCESLEM-KNKRRTQKYFSS-----LATGGNPYLPGP 401
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 158/369 (42%), Gaps = 74/369 (20%)
Query: 171 AERPEMVDAEEHDHHEMFQERRKRKE---------------FEVFVGGLDKDVVGDDLRK 215
AE ++D E + M QE +RK EVFVG + +D+ D+L
Sbjct: 35 AEVVALLDLMEKTGYSMVQENGQRKYGGPPPDWEGPPPPRGCEVFVGKIPRDMYEDELVP 94
Query: 216 VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQ 274
+F + G++ E RLMM T +N+G+AF+ + E A++A+ L N + GK GV S
Sbjct: 95 LFERAGKLYEFRLMME-FTGENRGYAFVMYTNKEAAQRAIQMLDNYKVRPGKFIGVCVSL 153
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
D+ LFLG+I K TK+ + ++K D V D+ + S ++ NRGFAF+E+ S A
Sbjct: 154 DNCRLFLGSIPKEKTKDEVLAEMKKL-TDGVVDVIMYPSSTDKSKNRGFAFVEYKSHKAA 212
Query: 335 MDAFKRL----------QKRDVLFGVDRPAKVSFADSFIDPG------------------ 366
A ++L + ++F F + G
Sbjct: 213 AMARRKLIPGTSLSSDSVRGSIVFCPSALGFFFFTSMCVSSGRGCTTGTFQLWGQSIQVD 272
Query: 367 ---------DEIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRK 415
+E+M +V+ ++V L + E+ + + ++ G + +++ K
Sbjct: 273 WAQPEKDVEEEVMQRVRVLYVRNLMLNTSEETLFKAFSHFKPGSVERVK--------KFT 324
Query: 416 DFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL-----QRGKGKHASRGDF 470
D+ FV + + A+ +N + + A V L++P G +H SRG
Sbjct: 325 DYAFVHYYCREDALAALDPMNGVLI----DGAAVEVMLAKPAISKEDSSGSRRHGSRGYL 380
Query: 471 RSGRGTGRA 479
+S +A
Sbjct: 381 KSNNTADQA 389
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 123/250 (49%), Gaps = 25/250 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +DV L +VF+ VG VT +R+ + T+++ G+A++ + ++ A +++ L
Sbjct: 86 LYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTL 145
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI G+ C + +L F+ N+ K +AL + +G N+ +
Sbjct: 146 NYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFG--NILSCKV 203
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD-EI 369
D N G ++G+ F+ + + A A ++ +L G K + FI + +
Sbjct: 204 AVDEN--GHSKGYGFVHYENEESARSAIDKVN--GMLIG----GKTVYVGPFIRRAERDN 255
Query: 370 MAQVK--TVFVDGLPASW-DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+A+ K V++ +P++W DE R+RE YG IT + + ++ K + F F F HD
Sbjct: 256 LAETKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVVRKD---PKGRLFAFCNFADHD 312
Query: 427 AAVTCAKSIN 436
+A +++N
Sbjct: 313 SAKAAVEALN 322
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 113/280 (40%), Gaps = 59/280 (21%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +FV LDK++ L FS G + ++ ++ + +KG+ F+ + E A
Sbjct: 167 RKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVD-ENGHSKGYGFVHYENEESA 225
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSDTL--------FLGNICKTWTKEA-LKEKLKH 299
R A+ ++ +I GK V P + D L ++ N+ W EA L+E
Sbjct: 226 RSAIDKVNGMLIGGKTVYVGPFIRRAERDNLAETKYTNVYIKNMPSAWEDEARLRETFAK 285
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL------------------ 341
YG ++ L + +D R FAF F+ A A + L
Sbjct: 286 YG--SITSLVVRKDPK----GRLFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSG 339
Query: 342 --------QKRD---VLF------GVDRPA--KVSFADSFIDPGDEIMAQVKTVFVDGLP 382
QKR+ +LF R A + F D D Q +++ +
Sbjct: 340 AEEKDEEGQKREGEQILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRF--QGVNLYIKNMD 397
Query: 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
S D++++R+L + +G IT ++ R+ R FGFV F
Sbjct: 398 DSIDDEKLRQLFEPFGSITSAKVMRDERGVSRC-FGFVCF 436
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 134 DENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRK 193
D +E ED AE + E+ + G+ V +A R M+ A+ +M Q+R
Sbjct: 328 DAGAIKEGEDSGAEEKDEEGQKREGEQILFVGPHQSKAHRSAMLRAK---FEQMNQDRND 384
Query: 194 RKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
R + +++ +D + + LR++F G +T ++M + + ++ F F+ F + E+A
Sbjct: 385 RFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRD-ERGVSRCFGFVCFMSPEEAT 443
Query: 253 QAVTELKNPVINGK 266
+AVTE+ ++ GK
Sbjct: 444 KAVTEMHLKLVKGK 457
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 16/247 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F G + E RLMM + +N+G+AF+ + + E+A +A+
Sbjct: 74 EVFVGKVPRDMYEDELVPLFESAGRIYEFRLMME-FSGENRGYAFVMYTSREEAVRAIQM 132
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L + G+ GV S D+ LF+G+I + KE + E+++ D V D+ + S++
Sbjct: 133 LDGYEVRPGRFIGVCVSLDNCRLFIGSIPRDRRKEEILEEMRKV-TDGVVDVIVYPSSSD 191
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NRGFAF+E+ S A A ++L L+G P +V +A+ D +E M +V+
Sbjct: 192 RNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWG--HPIQVDWAEPEKDMEEEAMQRVRV 249
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L E+ +R + G + +++ K D+ FV F + A+
Sbjct: 250 LYVRNLMLDTTEETLRREFSRFKPGSVERVK--------KLTDYAFVHFRSRSEALATLA 301
Query: 434 SINNAEL 440
+N ++
Sbjct: 302 VMNGVQI 308
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 133/253 (52%), Gaps = 20/253 (7%)
Query: 211 DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCG 269
D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK G
Sbjct: 4 DELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIG 62
Query: 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF- 328
V S D+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+
Sbjct: 63 VCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYE 121
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDED 388
S R+ AM K + L+G +V +AD + +E M +VK ++V L S E+
Sbjct: 122 SHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEE 179
Query: 389 RVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446
++ + G + +++ K +D+ FV F + AV A S+ N + +G
Sbjct: 180 TIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG--- 227
Query: 447 AKVRARLSRPLQR 459
A + L++P+ +
Sbjct: 228 ASIEVTLAKPVNK 240
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 43/236 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGGL DV +DL+++F VGEV EVR+ NK +AF+ F T E A +A+ +
Sbjct: 104 EVYVGGLSSDVSSEDLKQLFESVGEVAEVRMR---GKGDNKTYAFINFRTKEMALKAIQK 160
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N + GK+ V+ SQ + LF+GN+ WT + K ++ G V + L++ +
Sbjct: 161 LSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEVG-PGVLKVDLMK-APGS 218
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
G N+G+ F+E+ +++ A A +++ + + P VS+AD +QVK+++
Sbjct: 219 GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPT-VSWADHKNASEATSTSQVKSLY 277
Query: 378 VDGLPASWDEDRVR-------------------------------------ELLKN 396
V LP + +++++ + LKN
Sbjct: 278 VKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKERSMVMKALKN 333
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 53/258 (20%)
Query: 110 VDYDDKETEHEDVQEV------GNEEDE-HDDENVGEEEEDDLAEGEMEDVPEEHGQGEE 162
V +D + E V EV G +++ + N +E +A ++ + + +G++
Sbjct: 114 VSSEDLKQLFESVGEVAEVRMRGKGDNKTYAFINFRTKE---MALKAIQKLSNKDLKGKK 170
Query: 163 EVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE 222
++ + R +F+G + D DD + +VG
Sbjct: 171 IKVSSSQAKNR-------------------------LFIGNVPHDWTPDDFKTAVEEVGP 205
Query: 223 -VTEVRLMMNPQTKKNKGFAFLRF---ATVEQARQAVT------ELKNPVI----NGKQC 268
V +V LM P + +NKG+ F+ + A E A+Q ++ + P + +
Sbjct: 206 GVLKVDLMKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNAS 265
Query: 269 GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
T + +L++ N+ KT T+E LK+ +H G E +V G + F+ F
Sbjct: 266 EATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVG----EITKVVIPPAKSGHENRYGFVHF 321
Query: 329 SSRSDAMDAFKRLQKRDV 346
RS M A K ++ ++
Sbjct: 322 KERSMVMKALKNTERYEL 339
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 123/250 (49%), Gaps = 25/250 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +DV L +VF+ VG VT +R+ + T+++ G+A++ + ++ A +++ L
Sbjct: 85 LYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTL 144
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI G+ C + +L F+ N+ K +AL + +G N+ +
Sbjct: 145 NYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFG--NILSCKV 202
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD-EI 369
D N G ++G+ F+ + + A A ++ +L G K + FI + +
Sbjct: 203 AVDDN--GHSKGYGFVHYENEESARSAIDKVN--GMLIG----GKTVYVGPFIRRAERDN 254
Query: 370 MAQVK--TVFVDGLPASW-DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+A+ K V++ +P++W DE R+RE +G IT + + ++ K + F F F HD
Sbjct: 255 LAEAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRKD---PKGRLFAFCNFADHD 311
Query: 427 AAVTCAKSIN 436
+A +++N
Sbjct: 312 SAKAAVEALN 321
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 112/280 (40%), Gaps = 59/280 (21%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +FV LDK++ L FS G + ++ ++ +KG+ F+ + E A
Sbjct: 166 RKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVD-DNGHSKGYGFVHYENEESA 224
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSDTL--------FLGNICKTWTKEA-LKEKLKH 299
R A+ ++ +I GK V P + D L ++ N+ W E+ L+E
Sbjct: 225 RSAIDKVNGMLIGGKTVYVGPFIRRAERDNLAEAKYTNVYIKNMPSAWEDESRLRETFSK 284
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL------------------ 341
+G ++ L + +D R FAF F+ A A + L
Sbjct: 285 FG--SITSLVVRKDPK----GRLFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSG 338
Query: 342 --------QKRD---VLF------GVDRPA--KVSFADSFIDPGDEIMAQVKTVFVDGLP 382
QKR+ +LF R A + F D D Q +++ +
Sbjct: 339 AEEKEEEGQKREGDQILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRF--QGVNLYIKNMD 396
Query: 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
S D++++R+L + +G IT ++ R+ R FGFV F
Sbjct: 397 DSIDDEKLRQLFEPFGSITSAKVMRDERGVSRC-FGFVCF 435
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 155 EEHGQGEE--EVENAG---EEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDV 208
EE GQ E ++ G +A R M+ A+ +M Q+R R + +++ +D +
Sbjct: 343 EEEGQKREGDQILFVGPHQSKAHRSAMLRAK---FEQMNQDRNDRFQGVNLYIKNMDDSI 399
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK 266
+ LR++F G +T ++M + + ++ F F+ F + E+A +AVTE+ ++ GK
Sbjct: 400 DDEKLRQLFEPFGSITSAKVMRD-ERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGK 456
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V DL ++FS+VG+V+ +R+ B TKK+ +A++ + E+A A+ L
Sbjct: 62 LYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDTL 121
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GKQC + SQ + +F+ N+ + L + +G + L+
Sbjct: 122 AFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFG----KILSC 177
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ G ++GF F+ + A A + L +V DR +K+
Sbjct: 178 KIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQ--- 234
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
E++ V+V ED++RE+ + YG++T L + K + FGFV
Sbjct: 235 -------EMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTD-NEGKARGFGFV 286
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H A ++N EL
Sbjct: 287 NFEDHXEAAKAVDALNEKEL 306
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 31/256 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ VF+ L D+ L FS G++ ++ + + +KGF F+ + E A
Sbjct: 143 RKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATD-EHGHSKGFGFVHYDDAESA 201
Query: 252 RQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTWTKEALKEKL 297
+ A+ + ++N + V P ++ +++ N T++ L+E
Sbjct: 202 KAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMF 261
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+ YG V L D NEG RGF F+ F +A A L ++++ + V R
Sbjct: 262 EAYG--KVTSTYLPTD--NEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRA 317
Query: 354 AKV-----SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELA 406
K S + E +++ + V FV L + D+ +++E YG+IT ++
Sbjct: 318 QKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVM 377
Query: 407 RNMPSAKRKDFGFVTF 422
N + K + FGFV +
Sbjct: 378 TN-DAGKSRGFGFVCY 392
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 189 QER-RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
QER K + +FV LD + L++ F+ G++T ++M N K++GF F+ +
Sbjct: 336 QERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTN-DAGKSRGFGFVCYTK 394
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +A+ E+ ++ GK V +Q
Sbjct: 395 PEEATRAINEMHQRMVMGKPLYVALAQ 421
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 37/188 (19%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V ++ D LR++F G+VT L + + K +GF F+ F +A +AV L
Sbjct: 243 VYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKA-RGFGFVNFEDHXEAAKAVDAL 301
Query: 259 KNPVING--------------------------KQCGVTPSQDSDTLFLGNICKTWTKEA 292
+ G +Q ++ Q + LF+ N+ T
Sbjct: 302 NEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVN-LFVKNLDDTIDDTK 360
Query: 293 LKEKLKHYG-VDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351
LKE+ YG + + + +T N+ G +RGF F+ ++ +A A + +R V+
Sbjct: 361 LKEEFAPYGKITSAKVMT-----NDAGKSRGFGFVCYTKPEEATRAINEMHQRMVM---G 412
Query: 352 RPAKVSFA 359
+P V+ A
Sbjct: 413 KPLYVALA 420
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 121
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 122 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 175
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+D ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 176 AKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 234
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 235 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISR 281
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 118/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 149
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + + LKE +G
Sbjct: 150 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFG--- 206
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ + G ++GF F+ + DA A K + + + G V+R A
Sbjct: 207 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 265
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 266 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 321
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 322 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 350
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 230 EKHEDANKAVEEMNG---KEMSGKAIFVGRAQKKVERQAELKRKFE----------QLKQ 276
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 277 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 334
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 335 EEATKAVTEMNGRIVGSKPLYVALAQ 360
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 23/252 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D L ++F+ VG V +R+ + T+++ G+A++ F V A +A+ +
Sbjct: 14 LYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTM 73
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I K C + SQ TL F+ N+ + +AL + +G N+ +
Sbjct: 74 NYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFG--NILSCKV 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
D G ++G+ ++ + S A DA ++ + K + F+ +
Sbjct: 132 ATD--EAGRSQGYGYVHYESEDAATDAINKINSMTIC------DKEVYVGHFVRRTERSG 183
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+ ++V PA WDE+ +R+ + +G IT + A + FG+V F+ HDAAV
Sbjct: 184 QSDWTNLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA---FGWVNFEAHDAAV 240
Query: 430 TCAKSINN-AEL 440
++N AEL
Sbjct: 241 AAMDALNGIAEL 252
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 109/285 (38%), Gaps = 41/285 (14%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
M+ +R RK VFV LD + L FS G + ++ + + +++G+ +
Sbjct: 86 MWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFGNILSCKVATD-EAGRSQGYGY 144
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGV---------TPSQDSDTLFLGNICKTWTKEAL 293
+ + + + A A+ ++ + I K+ V + D L++ N W +E L
Sbjct: 145 VHYESEDAATDAINKINSMTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFPADWDEETL 204
Query: 294 KEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG---- 349
++ + +G D + F ++ F + A+ A L L G
Sbjct: 205 RKAFETFGAITSCKAAAAADGS------AFGWVNFEAHDAAVAAMDALNGIAELPGQAGG 258
Query: 350 ----VDRPAKVSFADSFIDPGDEIMA-------------QVKTVFVDGLPASWDEDRVRE 392
+ P V A I+ E+ A Q +FV L D+D++RE
Sbjct: 259 APTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRE 318
Query: 393 LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437
YG IT + R + + FGFV F + + A +NN
Sbjct: 319 NFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNN 363
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
+K + +FV LD + D LR+ F++ G +T R+M P T ++GF F+ F++ E+A
Sbjct: 295 KKYQGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEA 354
Query: 252 RQAVTELKNPVINGKQCGVTPSQ 274
+AVTE+ N ++ GK V +Q
Sbjct: 355 AKAVTEMNNKLVLGKPIFVALAQ 377
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 22/241 (9%)
Query: 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L +I G+ C +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 273 SQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
SQ L F+ N+ +AL + +G N+ + +D G ++G+
Sbjct: 62 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKVAQDEY--GNSKGYG 117
Query: 325 FLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVD 379
F+ + + A +A K L ++ V G AK F +E+ A ++V
Sbjct: 118 FVHYETAEAATNAIKHVNGMLLNEKKVFVG-HHIAKKDRQSKF----EEMKANFTNIYVK 172
Query: 380 GLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439
+ ++ R L + YG+IT L+R+ + K + FGFV F H+AA + +N E
Sbjct: 173 NVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYE 232
Query: 440 L 440
L
Sbjct: 233 L 233
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 32/242 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 69 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAA 127
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ N+ + T E +
Sbjct: 128 TNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALF 187
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS---SRSDAMDAFKRLQKRDVLFGVDRPA 354
+ YG ++ TL D N G +RGF F+ FS + S A++ + + V R
Sbjct: 188 EKYG--DITSATLSRD-NETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQ 244
Query: 355 KV---------SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405
K + + I+ + Q +++ L D++++REL +YG IT ++
Sbjct: 245 KKHEREEELRKQYEAARIEKASKY--QGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKV 302
Query: 406 AR 407
R
Sbjct: 303 MR 304
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E ++V +++DV ++ R +F + G++T L + +T K+
Sbjct: 148 HHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKS 207
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+ E A AV L + G++ V +Q
Sbjct: 208 RGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQ 244
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 126/245 (51%), Gaps = 18/245 (7%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E+++ K E+F+G L +D D+L + +VG + E+RLM++ + +G+AF F +
Sbjct: 54 EKQRVKGAEIFLGRLPRDCYEDELMPMLEKVGRLMELRLMLDF-SGSTRGYAFALFEDSK 112
Query: 250 QARQAVTELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
AR A +L + G + GV S D+ LF G + K +KE +L ++ + D+
Sbjct: 113 TARNACAKLDGYEVRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMTELNKI-LEGITDI 171
Query: 309 TLVEDSNNEGMNRGFAFLEFS-SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
L ++++ +NRGF F+EF R+ AM K + R +L+ D V +AD +PGD
Sbjct: 172 YLYPSAHDKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLW--DHEIAVDWADP--EPGD 227
Query: 368 ----EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
++M V +FV L + ++RE+ + +I ++L K F F+ ++
Sbjct: 228 PIDEDVMENVTALFVRNLSLDVQQQKIREIFQKSTKIPILKL------KKINHFAFIHYE 281
Query: 424 THDAA 428
+ AA
Sbjct: 282 SRQAA 286
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 15/226 (6%)
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALK 294
KN+G+AF+ + +A++AV EL N I G+ GV S D+ LF+G I K +E +
Sbjct: 2 KNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEIL 61
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRP 353
E++ + V D+ + + ++ NRGFAF+E+ S R+ AM K + R L+G
Sbjct: 62 EEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQ 118
Query: 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413
V +A+ ID +++M VK ++V L ED ++ K++G+ + R K
Sbjct: 119 IAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKK 172
Query: 414 RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
+D+ FV F + + AV ++N EL EG + L++P+ +
Sbjct: 173 IRDYAFVHFVSREDAVHAMNNLNGTEL-EGSC---LEVTLAKPVDK 214
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 95 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 152
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 153 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 206
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+D ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 207 AKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 265
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 266 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISR 312
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 142/336 (42%), Gaps = 57/336 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 180
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + + LKE +G
Sbjct: 181 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFG--- 237
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ + G ++GF F+ + DA A K + + + G V+R A
Sbjct: 238 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 296
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 297 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 352
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRS 472
+ K FGFV F + + A +N +G S+PL A R + R
Sbjct: 353 RSKGFGFVCFSSPEEATKAVTEMNGRIVG------------SKPLYVA---LAQRKEERK 397
Query: 473 GRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPAS 508
T + + G+ R+LP A I S+ PA+
Sbjct: 398 AHLTNQYMQRVAGM---RALP---ANAILSQFQPAA 427
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 261 EKHEDANKAVEEMNG---KEMSGKAIFVGRAQKKVERQAELKRKFE----------QLKQ 307
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 308 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 365
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 366 EEATKAVTEMNGRIVGSKPLYVALAQ 391
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 33/257 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G V +R+ + T+++ G+A++ + A +A+ +L
Sbjct: 175 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 234
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I K C + SQ +L F+ N+ +T +AL + +G + L+
Sbjct: 235 NYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG----DILSC 290
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFAD 360
++ G ++G+ F+ + + A A K +L + V G+ DR AK+
Sbjct: 291 KVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKI---- 346
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE+ +Q +++ LP + + E+ +G IT + + K + FGFV
Sbjct: 347 ------DEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDE-HGKHRGFGFV 399
Query: 421 TFDTHDAAVTCAKSINN 437
++ H++A ++++
Sbjct: 400 NYENHESASKAVDALHD 416
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 147/367 (40%), Gaps = 42/367 (11%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
M+ +R RK + +F+ LD+ + L F+ G++ ++ + + +KG+ F
Sbjct: 247 MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATD-EHGASKGYGF 305
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTW 288
+ + T E A A+ + +N K V P +D L++ N+
Sbjct: 306 VHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTET 365
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD--- 345
T E L E +G + S+ G +RGF F+ + + A A L +D
Sbjct: 366 TTEELNEVFGKFG----PITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKG 421
Query: 346 -VLFGVDRPAKVSFADSFIDPGDE-------IMAQVKTVFVDGLPASWDEDRVRELLKNY 397
VL+ V R K + D+ + E + Q ++V L +D+++++ +
Sbjct: 422 NVLY-VARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPF 480
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457
G IT ++ ++ K FGFV F + D A +N LG + R
Sbjct: 481 GTITSCKVMKDE-KGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRK 539
Query: 458 QRGKGKHASRGDFRSGRGTGRATRGS-WGL-PSPRSLPGRSAR----GIGSRLPPASVKR 511
Q+ + + + R RS + G+ +G P+P G +A G G PP +
Sbjct: 540 QQLEAQMSQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPA 599
Query: 512 PVPVRDR 518
+P R R
Sbjct: 600 GMPPRPR 606
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 178 DAEEHDHHEM--FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK 235
DAE HE ++ K + ++V LD + + L+ F+ G +T ++M + +
Sbjct: 436 DAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKD-EKG 494
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
+KGF F+ F++ ++A +AV E+ NGK G P
Sbjct: 495 TSKGFGFVCFSSPDEATKAVAEM-----NGKMLGSKP 526
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 122/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + TKK+ G+A++ + E +A+ +L
Sbjct: 53 LYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQL 112
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I+G+ C + SQ +L F+ N+ +AL + +G L+
Sbjct: 113 NYSLIDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFG----RILSC 168
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR AK
Sbjct: 169 KVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKF---- 224
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A VFV + + E + + + YG+IT + ++ K K FGF+
Sbjct: 225 ------EEMKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKD-SEGKSKGFGFI 277
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ HDAAV + +N+ E+
Sbjct: 278 NFENHDAAVKAVEELNDKEV 297
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 32/194 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K VFV D +L +F G++T + + + K +KGF F+ F +
Sbjct: 225 EEMKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGK-SKGFGFINFENHD 283
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV EL + +NG++ V +Q LF+ N+
Sbjct: 284 AAVKAVEELNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLD 343
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
+ T E L+E+ K +G + + E G ++GF F+ FS+ +A A + +R
Sbjct: 344 DSLTSEMLEEEFKPFGTITSAKVMVDET----GKSKGFGFVCFSAPEEATKAITEMNQRM 399
Query: 346 VLFGVDRPAKVSFA 359
VL +P V+ A
Sbjct: 400 VL---GKPLYVALA 410
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + + L + F G +T ++M++ +T K+KGF F+ F+ E+A +A+TE+
Sbjct: 337 LFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVD-ETGKSKGFGFVCFSAPEEATKAITEM 395
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 396 NQRMVLGKPLYVALAQRKDV 415
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 43/236 (18%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGGL DV +DL+++F VGEV EVR+ NK +AF+ F T E A +A+ +
Sbjct: 114 EVYVGGLSSDVSSEDLKQLFESVGEVAEVRMR---GKGDNKTYAFINFRTKEMALKAIQK 170
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L N + GK+ V+ SQ + LF+GN+ WT + K ++ G V + L++ +
Sbjct: 171 LSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEVG-PGVLKVDLMK-APGS 228
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
G N+G+ F+E+ +++ A A +++ + + P VS+AD +QVK+++
Sbjct: 229 GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPT-VSWADHKNASEATSTSQVKSLY 287
Query: 378 VDGLPASWDEDRVR-------------------------------------ELLKN 396
V LP + +++++ + LKN
Sbjct: 288 VKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKERSMVMKALKN 343
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 53/258 (20%)
Query: 110 VDYDDKETEHEDVQEV------GNEEDE-HDDENVGEEEEDDLAEGEMEDVPEEHGQGEE 162
V +D + E V EV G +++ + N +E +A ++ + + +G++
Sbjct: 124 VSSEDLKQLFESVGEVAEVRMRGKGDNKTYAFINFRTKE---MALKAIQKLSNKDLKGKK 180
Query: 163 EVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE 222
++ + R +F+G + D DD + +VG
Sbjct: 181 IKVSSSQAKNR-------------------------LFIGNVPHDWTPDDFKTAVEEVGP 215
Query: 223 -VTEVRLMMNPQTKKNKGFAFLRF---ATVEQARQAVT------ELKNPVING----KQC 268
V +V LM P + +NKG+ F+ + A E A+Q ++ + P ++
Sbjct: 216 GVLKVDLMKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNAS 275
Query: 269 GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
T + +L++ N+ KT T+E LK+ +H G E +V G + F+ F
Sbjct: 276 EATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVG----EITKVVIPPAKSGHENRYGFVHF 331
Query: 329 SSRSDAMDAFKRLQKRDV 346
RS M A K ++ ++
Sbjct: 332 KERSMVMKALKNTERYEL 349
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L +VFS VG V +R+ + T+++ G+A++ F V A +A+ L
Sbjct: 26 LYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERALDTL 85
Query: 259 KNPVINGKQCGVT-----PS---QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GK C + PS + +F+ N+ KT L + +G +++
Sbjct: 86 NYTQIKGKACRIMWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGNILSCKVSM 145
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
E +N +RGF F++F + +A +A ++ G+ K F FI G+
Sbjct: 146 DEHAN----SRGFGFVQFETAEEANEAISKVN------GMLLEDKRLFVGPFIPRGERES 195
Query: 371 A----QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ V+V P + +D R+ + YGEIT ++ R K FGFV F D
Sbjct: 196 TNGERRFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRK-EDGTSKCFGFVNFKEAD 254
Query: 427 AAVTCAKSIN 436
A C + +N
Sbjct: 255 DAKKCCEEMN 264
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 125/296 (42%), Gaps = 36/296 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK V L FSQ G + ++ M+ ++GF F++F T E+A +A++++
Sbjct: 114 IFIKNLDKTVDTRTLHDTFSQFGNILSCKVSMDEHA-NSRGFGFVQFETAEEANEAISKV 172
Query: 259 KNPVINGKQCGVTP------------SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
++ K+ V P + +++ N + + ++ + YG
Sbjct: 173 NGMLLEDKRLFVGPFIPRGERESTNGERRFTNVYVKNFPDNVSDDDFRKSFERYGEITSC 232
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ-------KRDVLFG-----VDRPA 354
+ ED G ++ F F+ F DA + + +RD+ G +R
Sbjct: 233 KIMRKED----GTSKCFGFVNFKEADDAKKCCEEMNGQKPFGGERDIYAGRAEKESERKE 288
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM--PSA 412
K+ I Q+ +++ L + D++++R+ + +G IT ++ R+ P
Sbjct: 289 KLKKKYDQIRMERLKNNQLVNLYIKNLDDTIDDEKLRQTFEQFGTITSAKVMRDKDRPEV 348
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRG 468
K FGFV F + A ++N +G + L +P++ + A++G
Sbjct: 349 S-KGFGFVCFAQPEEATRAVTAMNGQMVG----TKPIYVALHQPIEIRRQMQAAQG 399
Score = 46.2 bits (108), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
A +E+ER E + +++D M ER K + +++ LD + + LR+ F Q G +T
Sbjct: 280 AEKESERKEKLK-KKYDQIRM--ERLKNNQLVNLYIKNLDDTIDDEKLRQTFEQFGTITS 336
Query: 226 VRLMMNP-QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
++M + + + +KGF F+ FA E+A +AVT + NG+ G P
Sbjct: 337 AKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAM-----NGQMVGTKP 379
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 18/248 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD DV L ++F+ V V+ VR+ + T+++ G+A++ + +V A +A+ L
Sbjct: 14 LYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 259 KNPVINGKQCGVTPS--------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I + C + + +F+ N+ K+ + L + +G N+ +
Sbjct: 74 NFTCIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFG--NIMSCKI 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS EG + G+ F+ F A +A RL ++ G DRP V + E
Sbjct: 132 ATDS--EGNSLGYGFIHFEHPESAKEAIARLN--GMILG-DRPIYVGKFQRKAERFSEKD 186
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
V+V +P +W E+ + L YG+I+ + L + +K + FGFV F+ ++A
Sbjct: 187 KTFTNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSD---SKGRPFGFVNFEDPESAKK 243
Query: 431 CAKSINNA 438
+++NA
Sbjct: 244 AVANLHNA 251
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 18/166 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
R+ E VFV LDK + L FS G + ++ + + + G+ F+ F E A
Sbjct: 95 RRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDSE-GNSLGYGFIHFEHPESA 153
Query: 252 RQAVTELKNPVINGKQCGVTPSQ-----------DSDTLFLGNICKTWTKEALKEKLKHY 300
++A+ L ++ + V Q +++ +I KTW++E L Y
Sbjct: 154 KEAIARLNGMILGDRPIYVGKFQRKAERFSEKDKTFTNVYVKHIPKTWSEETLHTLFGVY 213
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
G + L L DS R F F+ F A A L V
Sbjct: 214 G--KISSLVLQSDSK----GRPFGFVNFEDPESAKKAVANLHNALV 253
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 114 DKETEHEDVQEVGNEED--EHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEA 171
D+ E D ++ ++ED E D E +EE VP + V A +
Sbjct: 287 DETVESNDYKQRNDKEDPQEADVEKNSDEENS---------VPFDVQPNRLYVSRAQKRN 337
Query: 172 ERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMM 230
ER ++ ++ HE +E + R + ++V L + + DLR +F G ++ V +
Sbjct: 338 ERQVVLKSQ----HEAARESQNRYQGVNLYVKNLSESMTESDLRSLFEPYGTISSVSIKT 393
Query: 231 NPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK 266
+ ++ ++GF F+ F + ++A +A+TE+ ++ GK
Sbjct: 394 D-ESGISRGFGFVSFLSPDEATKAITEMHLKLVRGK 428
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 124/260 (47%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V +R+ + TKK+ G+A++ F E +A+ +L
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ +L F+ N+ +AL + +G + L+
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFG----KILSC 168
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+++ G+++ F F+ + + A A + L R+V G DR +K
Sbjct: 169 KVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKF---- 224
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V+ + + E+ ++L + YG+IT I L ++ K K FGFV
Sbjct: 225 ------EEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDH-EGKSKGFGFV 277
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H++AV +N+ E+
Sbjct: 278 NFENHESAVKAVDELNDKEI 297
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+ +D D ++ +K+F G++T + L + + K +KGF F+ F E A +AV EL
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGK-SKGFGFVNFENHESAVKAVDEL 292
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ T E L+
Sbjct: 293 NDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLE 352
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ K +G ++ ++ D G ++GF F+ FSS +A A + +R +++G +P
Sbjct: 353 EEFKPFG--SITSARVMVDET--GKSKGFGFVCFSSPEEATKAITEMNQR-MIYG--KPL 405
Query: 355 KVSFA 359
V+ A
Sbjct: 406 YVALA 410
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LD + + L + F G +T R+M++ +T K+KGF F+ F++ E+A +A+TE+
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEM 395
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+I GK V +Q D
Sbjct: 396 NQRMIYGKPLYVALAQRKDV 415
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 123/260 (47%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + +KK+ G+A++ + E +A+ EL
Sbjct: 51 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEEL 110
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ + +F+ N+ +AL + +G + L+
Sbjct: 111 NYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----KILSC 166
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 167 KVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKF---- 222
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A ++V + ++ E+ +L YG+IT I L ++ K K FGFV
Sbjct: 223 ------EEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQ-DGKSKGFGFV 275
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ HDAAV + +N+ E+
Sbjct: 276 NFEEHDAAVKAVEELNDKEI 295
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 86/185 (46%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V +D ++ K+F+ G++T + L + Q K+KGF F+ F + A +AV EL
Sbjct: 232 IYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKD-QDGKSKGFGFVNFEEHDAAVKAVEEL 290
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ + E L+
Sbjct: 291 NDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLE 350
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ K +G + +V+D+ G ++GF F+ F++ +A A + +R V ++P
Sbjct: 351 EEFKPFGTITSAKV-MVDDA---GKSKGFGFVCFTTPEEATKAITEMNQRMV---NNKPL 403
Query: 355 KVSFA 359
V+ A
Sbjct: 404 YVALA 408
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 151/387 (39%), Gaps = 58/387 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ L + L FS G++ ++ + + ++K F F+ + T E A A+ +
Sbjct: 139 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENV 197
Query: 259 KNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +D ++ +++ NI +T+E ++ YG
Sbjct: 198 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYG--K 255
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364
+ + L +D +G ++GF F+ F A+ A + L +++ + V A +
Sbjct: 256 ITSIYLEKDQ--DGKSKGFGFVNFEEHDAAVKAVEELNDKEI---NGQKIYVGRAQKKRE 310
Query: 365 PGDEIMAQVKTV-------------FVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+E+ Q + + FV L S D +++ E K +G IT ++ + +
Sbjct: 311 RMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVD-DA 369
Query: 412 AKRKDFGFVTFDTHDAAVTCA-----KSINNAEL--GEGDNKAKVRARLSRPLQRGKGKH 464
K K FGFV F T + A + +NN L K R++L + +Q
Sbjct: 370 GKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQRKDVRRSQLEQQIQ------ 423
Query: 465 ASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSM 524
+R R + GLP P G PP + P P M M
Sbjct: 424 -ARNQMRMQNAAA-----AGGLPGQFMPP--MFYGQQGFFPPNG-RGNAPFPGPNPQMMM 474
Query: 525 TARARPMPPPPPRSYDRRAPVPSYPKP 551
R +P P PR PVP Y P
Sbjct: 475 RGRGQPFPEQWPRPGPNGQPVPVYGIP 501
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +FS +G VT +R+ + TK + G+A++ F E R A+ +L
Sbjct: 52 LYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIEKL 111
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GK C + SQ + +F+ N+ +AL + +G N+ +
Sbjct: 112 NYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFG--NILSCKI 169
Query: 311 VEDSNNEGMNRGFAFLEF---SSRSDAMDAFK--RLQKRDVLFGV-----DRPAKVSFAD 360
D G ++GF F+ F ++ +A+DA L R+V DR +K+
Sbjct: 170 ATDET--GKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKL---- 223
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V+V + ED L YG IT I + ++ K + FGF+
Sbjct: 224 ------EEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKD-SEGKFRGFGFI 276
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ HD A + +N+ E
Sbjct: 277 NFENHDDAAKAVEELNDLEF 296
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 35/278 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G + ++ + +T K+KGF F+ F A
Sbjct: 133 RKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-ETGKSKGFGFVHFEEDNAA 191
Query: 252 RQAVTELKNPVINGKQCGVTP--------------SQDSDTLFLGNICKTWTKEALKEKL 297
+AV + ++NG++ V + +++ N+ ++
Sbjct: 192 VEAVDAINGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALF 251
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG-----VDR 352
YG + + + +DS EG RGF F+ F + DA A + L D+ F V R
Sbjct: 252 SKYG--PITSIAMEKDS--EGKFRGFGFINFENHDDAAKAVEEL--NDLEFKGQKLYVGR 305
Query: 353 PAK-----VSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIEL 405
K + E +A+ + V FV L S D++++ +G IT ++
Sbjct: 306 AQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKV 365
Query: 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
RN K K+FGFV F T + A T A + N ++ G
Sbjct: 366 MRN-EEGKSKNFGFVCFSTPEEA-TKAITEKNQQIVAG 401
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + + L F+ G +T ++M N + K+K F F+ F+T E+A +A+TE
Sbjct: 336 LFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRN-EEGKSKNFGFVCFSTPEEATKAITEK 394
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 395 NQQIVAGKPLYVAIAQRKDV 414
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V +D D D+ +FS+ G +T + + + + K +GF F+ F + A +AV EL
Sbjct: 233 VYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKF-RGFGFINFENHDDAAKAVEEL 291
Query: 259 KNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGV--------DNVEDLTL 310
+ G++ V +Q L + K + L++ K+ GV D+++D L
Sbjct: 292 NDLEFKGQKLYVGRAQKKYER-LQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKL 350
Query: 311 VEDS-------------NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ N EG ++ F F+ FS+ +A A ++ V +P V+
Sbjct: 351 EAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIV---AGKPLYVA 407
Query: 358 FA 359
A
Sbjct: 408 IA 409
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 24/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L +VF+ VG V+ +R+ + T+K+ G+A++ + +V+ A A+ L
Sbjct: 33 LYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALESL 92
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G + S TL F+ N+ ++ +A + H+G + +
Sbjct: 93 NYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFG--PILSCKV 150
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
D N G+++G+ F+ + + A +A +++ G+ K FI D
Sbjct: 151 AMDEN--GVSKGYGFVHYDTEESAKEAIEKVN------GMVIGGKKVEVSPFIKKQDRDP 202
Query: 371 AQV---KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A V ++V P SWDE+ +++ L YGEIT + + + K + F FV F +
Sbjct: 203 ASVDVFTNLYVRNFPVSWDEEALKQFLDKYGEITSMMIKED---GKGRKFAFVNFAEPEM 259
Query: 428 AVTCAKSINNAELGEG 443
A +++N +L EG
Sbjct: 260 AKEAVEALNGTKLEEG 275
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++ LD + L+++F Q G +T ++M + + ++GF F+ F+ E+A +A+ +
Sbjct: 314 LYIKNLDDSFTDESLQELFGQFGSITSCKIMRD-ASGVSRGFGFVCFSRPEEATKAIAGM 372
Query: 259 KNPVINGK 266
++ GK
Sbjct: 373 HLKIVKGK 380
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 124/256 (48%), Gaps = 24/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV---EQARQAV 255
++VG L+KDV L ++FS VG V +R+ + T+++ G+A++ + + + A +A+
Sbjct: 23 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERAM 82
Query: 256 TELKNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
L V+NGK + S +F+ N+ K+ +AL + +G +
Sbjct: 83 ETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFG--KILS 140
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+ D+N G+++G+ F+ F ++ A A + + ++++ K+ + F D
Sbjct: 141 CKVATDAN--GVSKGYGFVHFEDQAAADRAIQTVNQKEI------EGKIVYVGPFQKRAD 192
Query: 368 EIMAQ--VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+ VFV LPA +D + ++ +GE+T + ++ K FGF+ F
Sbjct: 193 RPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKD-EKGSSKGFGFINFKDA 251
Query: 426 DAAVTCAKSINNAELG 441
+ A C +++N+ E+G
Sbjct: 252 ECAAKCVEALNDKEIG 267
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 18/261 (6%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G++ ++ + +KG+ F+ F A
Sbjct: 107 RKSGVGNIFIKNLDKSIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAA 165
Query: 252 RQAVTELKNPVINGKQCGVTPSQ------DSDTLFLGNICKTWTKEALKEKLKHYGVDNV 305
+A+ + I GK V P Q ++ K E ++L +
Sbjct: 166 DRAIQTVNQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFG 225
Query: 306 EDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADSF 362
E + V + +G ++GF F+ F A + L +++ + R K + ++
Sbjct: 226 EVTSAVVMKDEKGSSKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREAM 285
Query: 363 IDPGDE-------IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRK 415
+ E + Q ++V L D+D +R+L + G IT ++ ++ S K K
Sbjct: 286 LRQKVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDT-SGKSK 344
Query: 416 DFGFVTFDTHDAAVTCAKSIN 436
FGFV F +HD A +N
Sbjct: 345 GFGFVCFTSHDEATRAVTEMN 365
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 189 QER-RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
QER K + ++V L +V D LR +F+ G +T ++M + + K+KGF F+ F +
Sbjct: 295 QERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKD-TSGKSKGFGFVCFTS 353
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++A +AVTE+ ++ GK V +Q D
Sbjct: 354 HDEATRAVTEMNGKMVKGKPLYVALAQRKDV 384
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 122/253 (48%), Gaps = 22/253 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV---EQARQAV 255
++VG L+KDV L ++FS VG V +R+ + T+++ G+A++ + + + A +A+
Sbjct: 25 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRAM 84
Query: 256 TELKNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVED 307
L V+NGK + S + +F+ N+ KT +AL + +G +
Sbjct: 85 ETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG--KILS 142
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+ D+N G+++G+ F+ F ++ A A + + ++++ K+ + F D
Sbjct: 143 CKVATDAN--GVSKGYGFVHFEDQAAADRAIQTVNQKEI------EGKIVYVGPFQKRAD 194
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
VFV LPA +D + ++ +GEIT + ++ K FGF+ F ++
Sbjct: 195 RPQDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKD-DKGGSKGFGFINFKDAES 253
Query: 428 AVTCAKSINNAEL 440
A C + +N E+
Sbjct: 254 AAKCVEYLNEREM 266
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 16/252 (6%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G++ ++ + +KG+ F+ F A +A+ +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRAIQTV 174
Query: 259 KNPVINGKQCGVTPSQDS----DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
I GK V P Q ++ K + ++L ++ E + V
Sbjct: 175 NQKEIEGKIVYVGPFQKRADRPQDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMK 234
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADSFIDPGDE--- 368
+++G ++GF F+ F A + L +R++ R K + ++ + E
Sbjct: 235 DDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESK 294
Query: 369 ----IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+ Q ++V L D+D +REL N G IT ++ ++ S K K FGFV F +
Sbjct: 295 QERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKD-GSGKSKGFGFVCFTS 353
Query: 425 HDAAVTCAKSIN 436
HD A +N
Sbjct: 354 HDEATRAVTEMN 365
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 189 QER-RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
QER K + ++V L +V D LR++F+ G +T ++M + + K+KGF F+ F +
Sbjct: 295 QERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKD-GSGKSKGFGFVCFTS 353
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++A +AVTE+ ++ GK V +Q D
Sbjct: 354 HDEATRAVTEMNGKMVKGKPLYVALAQRKDV 384
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL YG+ +++ + PS K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PSGKSKGFGFVSFEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N ++ G K + +A L R ++ K + SR
Sbjct: 244 ANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ ++ G ++GF F+ F DA A + + +D+ + V R K
Sbjct: 216 -KTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 193 KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
K KEF V++ D+ + L+++FS+ G+ V++M +P + K+KGF F+ F E A
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDA 244
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
QAV ++ INGK V +Q L++ N+ T
Sbjct: 245 NQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E L+++ +G +T + EG ++GF F+ FSS +A A + R V
Sbjct: 305 IDDEKLRKEFSPFG-----SITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 20/148 (13%)
Query: 130 DEHDDENVGEEEED--DLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
++H+D N E+ + D+ G+M V G+ +++VE E + E ++
Sbjct: 239 EKHEDANQAVEDMNGKDI-NGKMVFV----GRAQKKVERQAELKRKFE----------QL 283
Query: 188 FQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F+
Sbjct: 284 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFS 341
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ E+A +AVTE+ ++ K V +Q
Sbjct: 342 SPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD DV +L +VF+Q+G+V +R+ + TKK+ G+A++ + T + A QA+ L
Sbjct: 28 LYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALELL 87
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
++ GK + S + +F+ N+ K+ +AL + +G + +
Sbjct: 88 NFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFG--TILSCRV 145
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D + G ++G+ F++F A A ++K + + DR V+ FI + M
Sbjct: 146 VMD--DAGNSKGYGFVQFEKEESAQIA---IEKVNGMLINDRQVSVA---PFIRKQERDM 197
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A K V+V L + ++ +R++ +G I+ + R+ K K FGFV F+ D
Sbjct: 198 ASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRD-ADGKSKCFGFVNFENVDD 256
Query: 428 AVTCAKSINNAELGE 442
A +++N + E
Sbjct: 257 AANAVENLNGKLINE 271
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 154/356 (43%), Gaps = 42/356 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ L+K + L FS G + R++M+ +KG+ F++F E A
Sbjct: 109 RKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMD-DAGNSKGYGFVQFEKEESA 167
Query: 252 RQAVTELKNPVINGKQCGVTP-----------SQDSDTLFLGNICKTWTKEALKEKLKHY 300
+ A+ ++ +IN +Q V P S++ + +++ N+ + T E L++ +
Sbjct: 168 QIAIEKVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGF 227
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL---FGVDRPAKVS 357
G + ++ D+ +G ++ F F+ F + DA +A + L + + + V R K S
Sbjct: 228 G--PISSAVVMRDA--DGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKS 283
Query: 358 FADSFIDPGDEIMAQVK-------TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP 410
++ + E + + K +++ + S D++++REL +G +T ++ ++ P
Sbjct: 284 EREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKS-P 342
Query: 411 SAKRKDFGFVTFDTHDAAVTCAKSINNAELGE-------GDNKAKVRARLSRPLQRGKGK 463
+ GFVTF + A+ +N +G K + RARL + +
Sbjct: 343 QGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQAQFAQMQIV 402
Query: 464 HASRGDFRSGRGT-------GRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRP 512
+ + G + +G P+P LP + A G G + P RP
Sbjct: 403 APNAPPMAPNPPSMYHPGPQGMGHQMFYGQPAPGLLPSQ-ANGFGYQQPMVPTMRP 457
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 188 FQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
F++ RK KE +++ +D + + LR++F+ G VT ++M +PQ + + G F
Sbjct: 293 FEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQ-SMGSGF 351
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTP 272
+ F+ E+A QAV ++ NGK G P
Sbjct: 352 VTFSAPEEAMQAVNDM-----NGKMVGSKP 376
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 25/243 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +V L +VF+QVG V+ +R+ + T+++ +A++ + A +A+ L
Sbjct: 12 LYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALDTL 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
N I GK C + SQ +L F+ N+ K +AL + +G N+ +
Sbjct: 72 NNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG--NILSCKV 129
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
V D NN ++GF F+ + S+ A A + + + V G + +K +
Sbjct: 130 VTDDNNS--SKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSK--------ER 179
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
G + VF L D+++ELL YG IT + + + + K K F F F++
Sbjct: 180 GQPTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESA 239
Query: 426 DAA 428
DAA
Sbjct: 240 DAA 242
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 24/267 (8%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VF+ LDK + L FS G + +++ + +KGF F+ + + + A
Sbjct: 93 RKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DNNSSKGFGFVHYESQDSA 151
Query: 252 RQAVTELKNPVINGKQCGVTPSQDS-----------DTLFLGNICKTWTKEALKEKLKHY 300
+A+ ++ +ING++ V P + S +F N+ + T + LKE L Y
Sbjct: 152 DKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEIKFTNVFFKNLAEDVTSDQLKELLAPY 211
Query: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
G + ++ ++ D G ++GFAF F S +DA ++ V G +P A
Sbjct: 212 GT--ITNVAIMLDEKT-GKSKGFAFANFES-ADAAKNVVEIENGKVFHG--KPLYAGRAQ 265
Query: 361 SFIDPGDEIMAQVKT------VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
I+ E+ +T +++ + S D D++RE+ +G IT + ++ +
Sbjct: 266 KKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTS 325
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV + + D A +N +G
Sbjct: 326 KGFGFVCYTSPDEATRAVTEMNGRMIG 352
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +++ +D + D LR+VFSQ G +T +M + + +KGF F+ + + ++A
Sbjct: 281 KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEAT 340
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDT 278
+AVTE+ +I K V +Q D
Sbjct: 341 RAVTEMNGRMIGTKPLYVALAQRKDI 366
>gi|22655766|gb|AAN04183.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|31430385|gb|AAP52302.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 728
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 131/257 (50%), Gaps = 38/257 (14%)
Query: 105 EEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMED--VPEEHGQGEE 162
EE G + ++E +D++E+ +++ E E E++ D +GE+ D +E G E
Sbjct: 171 EEEAGSEVSEEEAAADDMKEIADKDSE---EAQDEDKHGDNHKGEVADQLSNDEDVGGRE 227
Query: 163 EVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE 222
E+ +E + +V D ++ K E+FVGGL KD V +D+R VFSQ GE
Sbjct: 228 NDESPNDELDTSLLVLDSVPDGND--------KTLELFVGGLPKDCVEEDIRVVFSQCGE 279
Query: 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV-INGKQCGVT---PSQDSD- 277
V +R++ KK K AF+R+A + ++A+TE K+ + +NGK V+ P + S
Sbjct: 280 VESIRIV-----KKRKRIAFVRYADISATKKALTEFKDGIKVNGKSVRVSVAEPHRKSSE 334
Query: 278 --------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
T++L + ++W + ++E + YG N++ + ++ + +F+EFS
Sbjct: 335 QKALTKVKTVYLEHFPRSWDERNIEECCEGYG--NIQKVNIL-----RSKKKVVSFVEFS 387
Query: 330 SRSDAMDAFKRLQKRDV 346
SR A+ + + K +
Sbjct: 388 SRKSALACVEGISKAKI 404
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 22/201 (10%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + K +E ++ G VE + +V+ R + + S+ A+ F
Sbjct: 256 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKRIAFVR---YADISATKKALTEF 310
Query: 339 K---RLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLK 395
K ++ + V V P + S + + +VKTV+++ P SWDE + E +
Sbjct: 311 KDGIKVNGKSVRVSVAEPHRKSSEQ-------KALTKVKTVYLEHFPRSWDERNIEECCE 363
Query: 396 NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSR 455
YG I K+ + R +K+K FV F + +A+ C + I+ A++ D + K+ A L+R
Sbjct: 364 GYGNIQKVNILR----SKKKVVSFVEFSSRKSALACVEGISKAKI--NDREVKLAASLAR 417
Query: 456 PLQRGK-GKHASRGDFRSGRG 475
P + + +S+G F G
Sbjct: 418 PQSKVQLANESSKGGFNVHSG 438
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +++ D+L +F + G++ E+RLMM + +N+GFAF+ + T E A+ A+
Sbjct: 62 EVFVGKIPRNIYEDELVPLFERAGKIYELRLMME-FSGENRGFAFVMYTTKEDAQLAIKI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I + KE + +++K + V D+ + D+ +
Sbjct: 121 LNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATD 179
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NRGFAF+E+ S A A +RL L+G R +V +A + E M +VK
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWG--RAVQVDWACPEKEVDAETMRRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S ED ++ E K + K +D+ FV F + AV A SI
Sbjct: 238 LYVRNLMISTTEDTIK------AEFNKFKPRVVERVKKLRDYAFVHFYNREDAVA-AMSI 290
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N + +G A + L++P+ +
Sbjct: 291 MNGKCIDG---ASIEVTLAKPVNK 311
>gi|242004750|ref|XP_002423241.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506227|gb|EEB10503.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 487
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 118/233 (50%), Gaps = 10/233 (4%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+ L DV +L ++FS +G + EVRL ++ + N+G+AF+R+ + +A A+
Sbjct: 28 EIFIKNLPDDVFEIELFQIFSTIGRIYEVRLPVH-WSGINRGYAFIRYTKISEADAAIKA 86
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
I N + + S D+ LFL + T E ++ L VDNV+ + + N
Sbjct: 87 FDMFEIRNKRTIKIERSVDNTRLFLSCVPNDKTSEEIQCDLLTV-VDNVKKVYVYPTLEN 145
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV-DRPAKVSFADSFIDPGDEIMAQVKT 375
+ RG+AF+EF S DA A KR+ DV F + ++ ++A+ + I+ +
Sbjct: 146 PSIFRGYAFVEFKSHRDAAIA-KRILTPDVCFNLFEKKCIAAWANPLPFLNESILKTINI 204
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
+F+ +P + ++++++N E ++ + + +F F+TF H+ A
Sbjct: 205 LFIRNVPKEIKSNTIKKIIENILEDNSLQKVKRL-----NNFAFLTFRNHEKA 252
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 20/251 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V + L +F+Q+G+V +R+ + T+++ G+A++ + V+ A +A+ L
Sbjct: 6 LYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELL 65
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S + +F+ N+ + +AL + +G N+ +
Sbjct: 66 NFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFG--NILSCKV 123
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD-EI 369
DSN G ++G+ F++F A A ++ G+ K F F+ + E
Sbjct: 124 ATDSN--GQSKGYGFVQFEQEESAQVAIDKVN------GMLVAEKQVFVGPFVRRQEREQ 175
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+ VFV L S +D ++E+ +G+IT + R+ K K FGFV F+ D A
Sbjct: 176 NGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRD-SDGKSKCFGFVNFENPDEAA 234
Query: 430 TCAKSINNAEL 440
+N ++
Sbjct: 235 KAVVGLNGKKI 245
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 189 QERRKRKE----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER++R + +++ LD DV + LR++F+ G +T ++M + Q + +KG F+
Sbjct: 271 QERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQ-SKGSGFVA 329
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++ E+A +A E+ +I K V +Q
Sbjct: 330 YSAPEEANRATIEMNGKMIGSKPIYVAMAQ 359
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ R++EL YG+ +++ + PS K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKGFGFVSFEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N ++ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 115/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ ++ G ++GF F+ F DA A + + +D+ + V R K
Sbjct: 216 -KTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + D A +N +G
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVG 359
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 20/148 (13%)
Query: 130 DEHDDENVGEEEED--DLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
++H+D N EE + D+ G+M V G+ +++VE E + E ++
Sbjct: 239 EKHEDANKAVEEMNGKDI-NGKMVFV----GRAQKKVERQAELKRKFE----------QL 283
Query: 188 FQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F+
Sbjct: 284 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFS 341
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ ++A +AVTE+ ++ K V +Q
Sbjct: 342 SPDEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 14/229 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+G + +D D+L +F VG + RLMM+ + N+G+ F + E R+AV E
Sbjct: 43 EVFIGKIPRDCFEDELVPIFETVGRIYMFRLMMD-FSGCNRGYGFCIYTNREDTRRAVAE 101
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTK-EALKEKLKHYGVDNVEDLTLVEDSN 315
L + I GK GV S D+ LF+G I K TK E + E LK D V+D+ +
Sbjct: 102 LDSYEIRRGKMLGVCLSVDNCRLFVGGIPKNKTKDEIMAEMLK--VTDGVKDVIVYPSVA 159
Query: 316 NEGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK 374
++ NRGFAF+E+ + ++ AM K + R L+G V +A+ + ++IM++V+
Sbjct: 160 DKTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWG--HQIAVDWAEPEREVDEDIMSKVR 217
Query: 375 TVFVDGLPASWDEDRVRELL-KNYGEITKIELARNMPSAKRKDFGFVTF 422
++V L E+ +R+ + G + +E + K +D+ FV F
Sbjct: 218 ILYVRNLMLHTTEEALRDHCNRAIGAVDAVERVK-----KIRDYAFVHF 261
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 122/248 (49%), Gaps = 17/248 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVF+ + ++ +R GEV +R+ + ++ NKG+ F F E A +A+T
Sbjct: 103 EVFISKVPREATDAQVRAFCEMAGEVFALRIPKDRESNTNKGYCFCVFKARESAEKAMTI 162
Query: 258 LKNPVIN---GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKH--YGVDNVEDLTLVE 312
L+ + G++ V PS + L++G + + T+E L+ LK G++ +E L + +
Sbjct: 163 LEGREVKEFPGRRVNVVPSIVKNKLYIGQMPRDITREELEVLLKAEVVGLEKIE-LMMDK 221
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI-MA 371
++N RGF F+ F + + A A ++L + + + +V +AD DEI
Sbjct: 222 ETNQ---ARGFGFIAFYNSAAATLALRKLSRPEFRLRGHQ-VQVMWADP---KRDEIGTE 274
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS--AKRKDFGFVTFDTHDAAV 429
+VK+++V LP + E+ +R + YG + ++ L MP K +++ F+ + +A+
Sbjct: 275 KVKSIYVGNLPEQYTENDLRAIFSQYGTVERVTLL-YMPDDPTKLRNYTFINYTDRSSAL 333
Query: 430 TCAKSINN 437
N
Sbjct: 334 RAVSEAEN 341
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 151/308 (49%), Gaps = 34/308 (11%)
Query: 153 VPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDD 212
V + G +++V G+ A E++ H EV+VGG+ DV +D
Sbjct: 138 VSKTKGVHQKDVTGKGKHA---ELLALPPHGS-------------EVYVGGISSDVSSED 181
Query: 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
L+++ VGEV EV MM + ++G+AF+ F T A + V EL N + V+
Sbjct: 182 LKRLCEPVGEVVEVVRMMRGK-DDSRGYAFVNFRTKGLALKVVKELNNAKLK-VWIRVSS 239
Query: 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE-DLTLVEDSNNEGMNRGFAFLEFSSR 331
SQ + LF+GN+ +WT + ++ ++ G ++ DL V +N NRG+ F+E+ +
Sbjct: 240 SQAKNKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANR---NRGYGFVEYYNH 296
Query: 332 SDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
+ A + R + F +D A VS+AD + VK+V+V LP + + ++
Sbjct: 297 ACA--EYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQVVKSVYVKNLPKNVTQAQL 354
Query: 391 RELLKNYGEITKIELARNMPSAKRKD--FGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448
+ L +++GEI K+ L PS D +GFV F A+ +++ N E E D +
Sbjct: 355 KRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAM---RALQNTERYELDGQV- 407
Query: 449 VRARLSRP 456
+ L++P
Sbjct: 408 LDCSLAKP 415
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + +KK+ G+A++ + +E +A+ EL
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ + +F+ N+ +AL + +G + L+
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFG----KILSC 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 170 KVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKF---- 225
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+EI A ++V + + E+ +++L YG IT I L ++ K K FGFV
Sbjct: 226 ------EEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKD-AEGKSKGFGFV 278
Query: 421 TFDTHDAAVTCAKSINNAEL 440
++ H+AAV + +N+ E+
Sbjct: 279 NYEGHEAAVKAVEELNDKEI 298
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V +D + +DL+K+F+ G +T + L + + K +KGF F+ + E A +AV EL
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGK-SKGFGFVNYEGHEAAVKAVEEL 293
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ T E L+
Sbjct: 294 NDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLE 353
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ K +G + + E G ++GF F+ FSS +A A + +R + FG +P
Sbjct: 354 EEFKPFGTITSARVMVDET----GKSKGFGFVCFSSPEEATKAITEMNQR-MFFG--KPL 406
Query: 355 KVSFA 359
V+ A
Sbjct: 407 YVALA 411
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 170 EAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLM 229
+ +R M + ++ + ++ K + +F+ LD + + L + F G +T R+M
Sbjct: 309 QKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVM 368
Query: 230 MNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++ +T K+KGF F+ F++ E+A +A+TE+ + GK V +Q D
Sbjct: 369 VD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDV 416
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ R++EL YG+ +++ + PS K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKGFGFVSFEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N ++ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 115/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ ++ G ++GF F+ F DA A + + +D+ + V R K
Sbjct: 216 -KTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + D A +N +G
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVG 359
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 20/148 (13%)
Query: 130 DEHDDENVGEEEED--DLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
++H+D N EE + D+ G+M V G+ +++VE E + E ++
Sbjct: 239 EKHEDANKAVEEMNGKDI-NGKMVFV----GRAQKKVERQAELKRKFE----------QL 283
Query: 188 FQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F+
Sbjct: 284 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFS 341
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ ++A +AVTE+ ++ K V +Q
Sbjct: 342 SPDEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 36/295 (12%)
Query: 164 VENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV 223
E E+ E + D +E + E + + ++VG LD V L +FS +G V
Sbjct: 5 TEKTAEQLENLSLQDKQEGTNEE---NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAV 61
Query: 224 TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTL---- 279
+ +R+ + TK + G+A++ F + A+ A+ +L I GK C + SQ +L
Sbjct: 62 SSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKG 121
Query: 280 ----FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF---SSRS 332
F+ N+ +AL + +G N+ + D G ++GF ++ F S S
Sbjct: 122 AGNIFIKNLHPDIDNKALYDTFSVFG--NILSSKVATDET--GKSKGFGYVHFEEDESAS 177
Query: 333 DAMDAFK--RLQKRDVLFG-----VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASW 385
+A+DA L +++ G +R +K +E+ A V++ +
Sbjct: 178 EAIDALNGMLLNGQEIYVGPHLSKKERESKF----------EEMKANFTNVYIKNINTET 227
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
+ EL+ +G+ + L R P + K FGFV F H+ AV C + +NN E
Sbjct: 228 TDKEFEELVAKFGKTDSVVLERT-PEGENKGFGFVNFVNHEDAVKCVEELNNTEF 281
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 36/265 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G + ++ + +T K+KGF ++ F E A
Sbjct: 118 RKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESA 176
Query: 252 RQAVTELKNPVINGKQCGVTP--------------SQDSDTLFLGNICKTWTKEALKEKL 297
+A+ L ++NG++ V P + +++ NI T + +E +
Sbjct: 177 SEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELV 236
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+G + ++V + EG N+GF F+ F + DA+ + L + +P V+
Sbjct: 237 AKFGKTD----SVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEF---KGQPLYVN 289
Query: 358 FADSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + E+ Q + +F+ L S D+ ++ E YG IT +
Sbjct: 290 RAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAK 349
Query: 405 LARNMPSAKRKDFGFVTFDTHDAAV 429
+ + K K FGFV F T + A
Sbjct: 350 VM-TTENGKSKGFGFVCFSTPEEAT 373
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +F+ LD + L + F+ G +T ++M + K+KGF F+ F+T E+A
Sbjct: 315 KYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFSTPEEAT 373
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDT 278
+A+TE ++ GK V +Q D
Sbjct: 374 KAITEKNQQIVAGKPLYVAIAQRKDV 399
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 139/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D+ L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL YG+ +++ + P+ K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEE 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N ++ G KA+ +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADS 361
+ L++ ++ G ++GF F+ F +A A + + +D+ + V R K + +
Sbjct: 216 -KTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQA 274
Query: 362 FIDPGDEIMAQVK-------TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
+ E + Q + +++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 125 VGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDH 184
V E+ E ++ V E D+ G+M V G+ +++ E E R E
Sbjct: 236 VSFEKHEEANKAVEEMNGKDI-NGKMLFV----GRAQKKAERQAELKRRFE--------- 281
Query: 185 HEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFL 243
++ QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+
Sbjct: 282 -QLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFV 338
Query: 244 RFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L +F+QVG+V VR+ + T+++ G+ ++ ++ A +A+ L
Sbjct: 40 LYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEML 99
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK V S TL F+ N+ K+ +AL + +G N+ +
Sbjct: 100 NFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFG--NILSCKI 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
DSN G ++G+ F+++ + A A +L G+ K + F+ +
Sbjct: 158 ATDSN--GQSKGYGFVQYDNEESAQGAIDKLN------GMLMNDKQVYVGHFLRKQERES 209
Query: 370 ---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
M + + V+V L S +D ++++ +G IT + R+ K K FGF+ F+T +
Sbjct: 210 TTGMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAE 268
Query: 427 AAVTCAKSIN 436
A +S+N
Sbjct: 269 DAAKAVESLN 278
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 28/267 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + ++KG+ F+++ E A
Sbjct: 121 RKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATD-SNGQSKGYGFVQYDNEESA 179
Query: 252 RQAVTELKNPVINGKQCGV------------TPSQDSDTLFLGNICKTWTKEALKEKLKH 299
+ A+ +L ++N KQ V T +++ N+ ++ T + LK+
Sbjct: 180 QGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGE 239
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+G N+ ++ D+ +G ++ F F+ F + DA A + L + D + V + K
Sbjct: 240 FG--NITSAVVMRDA--DGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKK 295
Query: 357 S-----FADSFIDPGDEIM--AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
S F E + Q ++V L + D+++++EL +G IT ++ R+
Sbjct: 296 SEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRD- 354
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSIN 436
PS + GFV F T + A +N
Sbjct: 355 PSGISRGSGFVAFSTSEEASRALSEMN 381
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 161 EEEVENAGEEAERPEMVDAEEHDHHEMFQERRK----RKEFE-VFVGGLDKDVVGDDLRK 215
EE + A ++ M D + + H + ++ R+ +F+ V+V L + D+L+K
Sbjct: 176 EESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKK 235
Query: 216 VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275
VF + G +T ++M K+K F F+ F T E A +AV L + K+ V +Q
Sbjct: 236 VFGEFGNITSA-VVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQK 294
Query: 276 SD------------------------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLV 311
L++ N+ T E LKE +G + ++
Sbjct: 295 KSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFG--TITSCKVM 352
Query: 312 EDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
D + G++RG F+ FS+ +A A + + + V +P V+ A
Sbjct: 353 RDPS--GISRGSGFVAFSTSEEASRALSEMNGKMI---VSKPLYVALA 395
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ R++EL YG+ +++ + PS K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKGFGFVSFEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N ++ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 115/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ ++ G ++GF F+ F DA A + + +D+ + V R K
Sbjct: 216 -KTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + D A +N +G
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVG 359
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 20/148 (13%)
Query: 130 DEHDDENVGEEEED--DLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
++H+D N EE + D+ G+M V G+ +++VE E + E ++
Sbjct: 239 EKHEDANKAVEEMNGKDI-NGKMVFV----GRAQKKVERQAELKRKFE----------QL 283
Query: 188 FQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F+
Sbjct: 284 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFS 341
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ ++A +AVTE+ ++ K V +Q
Sbjct: 342 SPDEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ITGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 123/260 (47%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + +KK+ G+A++ + E +A+ EL
Sbjct: 53 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 112
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ + +F+ N+ +AL + +G + L+
Sbjct: 113 NYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----KILSC 168
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 169 KVAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKF---- 224
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A ++V + ++ E+ +L YG+IT I L ++ K K FGFV
Sbjct: 225 ------EEMKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQ-DGKSKGFGFV 277
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ HD+AV + +N+ E+
Sbjct: 278 NFENHDSAVKAVEELNDKEI 297
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V +D + + K+F+ G++T + L + Q K+KGF F+ F + A +AV EL
Sbjct: 234 IYVKNIDLNYSEESFEKLFAPYGKITSIYLEKD-QDGKSKGFGFVNFENHDSAVKAVEEL 292
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ E L+
Sbjct: 293 NDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLE 352
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E+ K +G + +V+D+ G ++GF F+ F++ +A A + R +
Sbjct: 353 EEFKSFGTITSAKV-MVDDA---GKSKGFGFVCFTTPEEATKAITEMNTRMI 400
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 83/381 (21%), Positives = 152/381 (39%), Gaps = 47/381 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ L + L FS G++ ++ + + ++K F F+ + T E A A+ +
Sbjct: 141 IFIKNLHPAIDNKALHDTFSAFGKILSCKVAAD-EFGQSKCFGFVHYETAEAAEAAIENV 199
Query: 259 KNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +D ++ +++ NI +++E+ ++ YG
Sbjct: 200 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAPYG--K 257
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKV----- 356
+ + L +D +G ++GF F+ F + A+ A + L +++ V R K
Sbjct: 258 ITSIYLEKDQ--DGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQKKRERLE 315
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
+ E +A+ + V FV L + D +++ E K++G IT ++ + + K
Sbjct: 316 ELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVD-DAGKS 374
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGR 474
K FGFV F T + A +N + N + L+ QR + + R
Sbjct: 375 KGFGFVCFTTPEEATKAITEMNTRMI----NGKPLYVALA---QRKDVRRSQLEQQIQAR 427
Query: 475 GTGRATRGSWGLPSPRSLPGRSA----RGIGSRLPPASVKRPVPVRDRRPIMSMTARARP 530
R + G LPG+ G PP + P P M M R +P
Sbjct: 428 NQMRMQNAAAG-----GLPGQFMPPMFYGQQGFFPPNG-RGNAPYPGPNPQMMMRGRGQP 481
Query: 531 MPPPPPRSYDRRAPVPSYPKP 551
P PR PVP Y P
Sbjct: 482 FPEQWPRPGPNGQPVPVYGIP 502
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------INGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------INGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL YG+ +++ + P+ K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N ++ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSR 290
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ ++ G ++GF F+ F DA A + + +D+ + V R K
Sbjct: 216 -KTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 20/148 (13%)
Query: 130 DEHDDENVGEEEED--DLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
++H+D N EE + D+ G+M V G+ +++VE E + E ++
Sbjct: 239 EKHEDANKAVEEMNGKDI-NGKMVFV----GRAQKKVERQAELKRKFE----------QL 283
Query: 188 FQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F+
Sbjct: 284 KQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVML--EDGRSKGFGFVCFS 341
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ E+A +AVTE+ ++ K V +Q
Sbjct: 342 SPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 137/264 (51%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +++ D+L +F + G++ E+RLMM + +N+GFAF+ + T E A+ A+
Sbjct: 62 EVFVGKIPRNIYEDELVPLFERAGKIYELRLMME-FSGENRGFAFVMYTTKEDAQLAIKI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I + KE + +++K + V D+ + D+ +
Sbjct: 121 LNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATD 179
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NRGFAF+E+ S A A +RL L+G R +V +A + E M +VK
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWG--RAVQVDWACPEKEVDAETMRRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S ED ++ E K + K +D+ FV F + AV A S+
Sbjct: 238 LYVRNLMISTTEDTIK------AEFNKFKPRVVERVKKLRDYAFVHFYNREDAVA-AMSV 290
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N + +G A + L++P+ +
Sbjct: 291 MNGKCIDG---ASIEVTLAKPVNK 311
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------INGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 24/254 (9%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQ----VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQ 253
E+F+GG+ K D+R V + V+L+++ T +N+G+AF+ + + E A
Sbjct: 12 ELFLGGIPKSASEADVRAFCDDGAEGVASPSSVQLVIDTATGQNRGYAFVAYPSREDAAA 71
Query: 254 AVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313
A +L I K+ V+ Q +F+GN+ + T+ + + L+ G VE L + ++
Sbjct: 72 AAEKLNEKAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGCGGVEKLEMPKN 131
Query: 314 SNNE--GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI-DPGDEIM 370
N +GF F +F + S A A K L + + G RP +AD + DP
Sbjct: 132 RNPAYPSQTKGFGFADFYNASCAERAMKILSESRLFLG--RPVTARWADPKLPDPS---- 185
Query: 371 AQVKTVFVDGLPASW-----DEDRVRELLKNYGEITKIELARNMP-----SAKRKDFGFV 420
VK+V+V LP S E++++ L YG++ + + + P SAKR +F FV
Sbjct: 186 TTVKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDASASAKR-NFAFV 244
Query: 421 TFDTHDAAVTCAKS 434
+ + ++A+ A++
Sbjct: 245 HYASRESALAAAEA 258
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL YG+ +++ + P+ K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N ++ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ ++ G ++GF F+ F DA A + + +D+ + V R K
Sbjct: 216 -KTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 20/148 (13%)
Query: 130 DEHDDENVGEEEED--DLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
++H+D N EE + D+ G+M V G+ +++VE E R E ++
Sbjct: 239 EKHEDANKAVEEMNGKDI-NGKMVFV----GRAQKKVERQAELKRRFE----------QL 283
Query: 188 FQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F+
Sbjct: 284 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFS 341
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ E+A +AVTE+ ++ K V +Q
Sbjct: 342 SPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 19/225 (8%)
Query: 237 NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEK 296
++G+AF+ F T A + V EL N + GK+ V+ SQ + LF+GN+ +WT + ++
Sbjct: 8 SRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKA 67
Query: 297 LKHYGVDNVE-DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA- 354
++ G ++ DL V +N NRG+ F+E+ + + A + R + F +D A
Sbjct: 68 VEEVGPGVLKADLMKVSSANR---NRGYGFVEYYNHACA--EYARQEMSSPTFKLDSNAP 122
Query: 355 KVSFADSFIDPGDEI-MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413
VS+AD D + +QVK+V+V LP + + +++ L +++GEI K+ L PS
Sbjct: 123 TVSWADP--KNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSRG 177
Query: 414 RKD--FGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
D +GFV F A+ +++ N E E D + + L++P
Sbjct: 178 GHDNRYGFVHFKDRSMAM---RALQNTERYELDGQV-LDCSLAKP 218
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++F+G + DD RK +VG V + LM +N+G+ F+ + A A
Sbjct: 49 KLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQ 108
Query: 257 ELKNPVI----NGKQCGVTPSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVDN 304
E+ +P N +++D ++++ N+ K T+ LK +H+G
Sbjct: 109 EMSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHG--E 166
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
+E + L + G + + F+ F RS AM A + ++ ++
Sbjct: 167 IEKVVL--PPSRGGHDNRYGFVHFKDRSMAMRALQNTERYEL 206
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 121/269 (44%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD----VLF------GVDRPA 354
+ L++ + G ++GF F+ + DA A + + ++ V+F V+R A
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ITGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ITGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 120/269 (44%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD----VLF------GVDRPA 354
+ L++ + G ++GF F+ + DA A + + ++ V+F V+R A
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DENLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ITGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 121/269 (44%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD----VLF------GVDRPA 354
+ L++ + G ++GF F+ + DA A + + ++ V+F V+R A
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 121/269 (44%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD----VLF------GVDRPA 354
+ L++ + G ++GF F+ + DA A + + ++ V+F V+R A
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 121/269 (44%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD----VLF------GVDRPA 354
+ L++ + G ++GF F+ + DA A + + ++ V+F V+R A
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 33/169 (19%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V Y+ E ++ V+E+ +E G++ V G+ +++VE
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKE----------------INGKIIFV----GRAQKKVER 272
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
E + E ++ QER R + +++ LD + + LRK FS G +T
Sbjct: 273 QAELKRKFE----------QLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++M+ + ++KGF F+ F++ E+A +AVTE+ ++ K V +Q
Sbjct: 323 AKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 139/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D+ L + FS G V +R+ + T+++ G+A++ F+ A +A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++E+ YG+ +++ + PS K + FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTD-PSGKSRGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N EL G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISR 290
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 118/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG-----VDRPA 354
+ L++ ++ G +RGF F+ + DA A + L + V G ++R A
Sbjct: 216 -KTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
Query: 193 KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
K KEF V++ D+ + L+++F + G+ V++M +P + K++GF F+ + E A
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDP-SGKSRGFGFVSYEKHEDA 244
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
+AV E+ +NGK V +Q L++ N+ T
Sbjct: 245 NKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E L+++ +G + L EG ++GF F+ FSS +A A + R V
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVML-----EEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE D+Y K + + +P + +G V Y+ E ++ V+E+ E
Sbjct: 204 DERLKEIFDKYGKTLSVKVM-TDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVF 262
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
VG + ++++E E + E ++ QER R +
Sbjct: 263 VG--------------------RAQKKMERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 33/259 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +FS +G V+ +R+ + TK + G+A++ F E + A+ +L
Sbjct: 45 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKL 104
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ + L E +G N+ +
Sbjct: 105 NYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFG--NILSCKI 162
Query: 311 VEDSNNEGMNRGFAFLEFSSRS---DAMDAFK--RLQKRDVLFG-----VDRPAKVSFAD 360
D G ++GF F+ F + +A+DA L ++V DR +K+
Sbjct: 163 ANDET--GKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKL---- 216
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE A V+V L E+ L K YG IT + L ++ K + FGFV
Sbjct: 217 ------DEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKD-AEGKSRGFGFV 269
Query: 421 TFDTHDAAVTCAKSINNAE 439
F+ H+ AV +++N+ E
Sbjct: 270 DFENHEDAVKAVEALNDTE 288
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 120/263 (45%), Gaps = 32/263 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L + FS G + ++ N +T K+KGF F+ F E A
Sbjct: 126 RKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILSCKI-ANDETGKSKGFGFVHFENEEAA 184
Query: 252 RQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTWTKEALKEKL 297
R+A+ + ++NG++ V P + +++ N+ T+E +
Sbjct: 185 REAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLF 244
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ----KRDVLFGVDRP 353
K YG + + L +D+ EG +RGF F++F + DA+ A + L K L+ V R
Sbjct: 245 KPYGT--ITSVALEKDA--EGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLY-VGRA 299
Query: 354 AK-----VSFADSFIDPGDEIMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELA 406
K + E +A+ + +F+ L S D+++++E +G IT +
Sbjct: 300 QKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVM 359
Query: 407 RNMPSAKRKDFGFVTFDTHDAAV 429
R + K K FGFV F T + A
Sbjct: 360 RT-ENGKSKGFGFVCFSTPEEAT 381
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +F+ LD + + L++ F+ G +T R+M + K+KGF F+ F+T E+A
Sbjct: 323 KYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRT-ENGKSKGFGFVCFSTPEEAT 381
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDT 278
+A+TE ++ GK V +Q D
Sbjct: 382 RAITEKNQQIVAGKPLYVAIAQRKDV 407
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 26/243 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L +VF+QVG V +R+ + T+++ +A++ + A +A+ L
Sbjct: 10 LYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALDTL 69
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
N I GK C + SQ +L F+ N+ KT +AL + +G N+ +
Sbjct: 70 NNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFG--NILSCKV 127
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
V D N ++GF F+ + S+ A A + + + V G + +K +
Sbjct: 128 VTDETNT--SKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSK--------ER 177
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
G + VF+ L E ++ +LL+ +G+IT + + + K K FGF F+
Sbjct: 178 GATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTD-EKGKSKGFGFANFEHA 236
Query: 426 DAA 428
DAA
Sbjct: 237 DAA 239
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 115/245 (46%), Gaps = 21/245 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK V L FS G + +++ + +T +KGF F+ + + E A +A+ ++
Sbjct: 98 IFIKNLDKTVDHKALYDTFSAFGNILSCKVVTD-ETNTSKGFGFVHYESQESAEKAIAKV 156
Query: 259 KNPVINGKQCGVTPSQDS-----------DTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+IN ++ V P + S +F+ N+ + +++ L + L+ +G + +
Sbjct: 157 NGMMINNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHG--KITN 214
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK----RLQKRDVLFGVDRPAKVSFADSFI 363
L ++ D +G ++GF F F A A + ++ V++ V R K ++ +
Sbjct: 215 LCIMTDE--KGKSKGFGFANFEHADAAKGAVENENGKMFSGKVIY-VGRAQKKLEREAEL 271
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
E Q +++ L S D D++R YG IT ++ R+ + K FGFV +
Sbjct: 272 KHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYS 331
Query: 424 THDAA 428
T D A
Sbjct: 332 TPDEA 336
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +++ LD + D LR FS G +T ++M + + +KGF F+ ++T ++A
Sbjct: 278 KYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEAS 337
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDT 278
+AV E+ ++ K V +Q D
Sbjct: 338 KAVAEMHGRMVGSKPLYVAFAQRKDV 363
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 24/272 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD+ V L ++F QV +V +R+ + +++ G+A++ F++ + A A+ L
Sbjct: 37 LYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHL 96
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S ++ F+ N+ + +AL++ +G V +
Sbjct: 97 NFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFG--TVLSCKV 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DSN G ++G+ F++F S A + ++L G+ K + FI + I
Sbjct: 155 AVDSN--GQSKGYGFVQFESEESAEISIEKLN------GMLLNDKQVYVGHFIRHQERIR 206
Query: 371 A---QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A Q V+V LP + +D ++ L +G IT + + K K FGFV F D+
Sbjct: 207 ANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITS-AIVMTDSNGKSKCFGFVNFQNTDS 265
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
A + ++ L GD+K R R +R
Sbjct: 266 AAAAVEKLDGTVL--GDDKTLYVGRAQRKAER 295
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 34/270 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VF+ LD + LR F+ G V ++ ++ ++KG+ F++F + E A
Sbjct: 118 RKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVD-SNGQSKGYGFVQFESEESA 176
Query: 252 RQAVTELKNPVINGKQCGV------------TPSQDSDTLFLGNICKTWTKEALKEKLKH 299
++ +L ++N KQ V SQ ++ +++ N+ +T T + LK
Sbjct: 177 EISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAP 235
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
+G + ++ DSN G ++ F F+ F + A A ++L + G D+ V A
Sbjct: 236 HG--TITSAIVMTDSN--GKSKCFGFVNFQNTDSAAAAVEKLD--GTVLGDDKTLYVGRA 289
Query: 360 DSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNYGEITKIELA 406
+ E+ A+ + +++ L D+++++EL YG IT ++
Sbjct: 290 QRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVM 349
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ K GFV F + D A +N
Sbjct: 350 LDQ-HGLSKGSGFVAFSSPDEATKALNEMN 378
>gi|222612494|gb|EEE50626.1| hypothetical protein OsJ_30830 [Oryza sativa Japonica Group]
Length = 653
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 131/257 (50%), Gaps = 38/257 (14%)
Query: 105 EEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMED--VPEEHGQGEE 162
EE G + ++E +D++E+ +++ E E E++ D +GE+ D +E G E
Sbjct: 134 EEEAGSEVSEEEAAADDMKEIADKDSE---EAQDEDKHGDNHKGEVADQLSNDEDVGGRE 190
Query: 163 EVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE 222
E+ +E + +V D ++ K E+FVGGL KD V +D+R VFSQ GE
Sbjct: 191 NDESPNDELDTSLLVLDSVPDGND--------KTLELFVGGLPKDCVEEDIRVVFSQCGE 242
Query: 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV-INGKQCGVT---PSQDSD- 277
V +R++ KK K AF+R+A + ++A+TE K+ + +NGK V+ P + S
Sbjct: 243 VESIRIV-----KKRKRIAFVRYADISATKKALTEFKDGIKVNGKSVRVSVAEPHRKSSE 297
Query: 278 --------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
T++L + ++W + ++E + YG N++ + ++ + +F+EFS
Sbjct: 298 QKALTKVKTVYLEHFPRSWDERNIEECCEGYG--NIQKVNIL-----RSKKKVVSFVEFS 350
Query: 330 SRSDAMDAFKRLQKRDV 346
SR A+ + + K +
Sbjct: 351 SRKSALACVEGISKAKI 367
>gi|115481262|ref|NP_001064224.1| Os10g0167500 [Oryza sativa Japonica Group]
gi|113638833|dbj|BAF26138.1| Os10g0167500 [Oryza sativa Japonica Group]
Length = 703
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 131/257 (50%), Gaps = 38/257 (14%)
Query: 105 EEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMED--VPEEHGQGEE 162
EE G + ++E +D++E+ +++ E E E++ D +GE+ D +E G E
Sbjct: 171 EEEAGSEVSEEEAAADDMKEIADKDSE---EAQDEDKHGDNHKGEVADQLSNDEDVGGRE 227
Query: 163 EVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE 222
E+ +E + +V D ++ K E+FVGGL KD V +D+R VFSQ GE
Sbjct: 228 NDESPNDELDTSLLVLDSVPDGND--------KTLELFVGGLPKDCVEEDIRVVFSQCGE 279
Query: 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV-INGKQCGVT---PSQDSD- 277
V +R++ KK K AF+R+A + ++A+TE K+ + +NGK V+ P + S
Sbjct: 280 VESIRIV-----KKRKRIAFVRYADISATKKALTEFKDGIKVNGKSVRVSVAEPHRKSSE 334
Query: 278 --------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
T++L + ++W + ++E + YG N++ + ++ + +F+EFS
Sbjct: 335 QKALTKVKTVYLEHFPRSWDERNIEECCEGYG--NIQKVNIL-----RSKKKVVSFVEFS 387
Query: 330 SRSDAMDAFKRLQKRDV 346
SR A+ + + K +
Sbjct: 388 SRKSALACVEGISKAKI 404
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 342 QKRDVL-----FGVDRPAKVSFADSFIDPGDEI----------------MAQVKTVFVDG 380
+KR + A F D G + + +VKTV+++
Sbjct: 289 RKRIAFVRYADISATKKALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEH 348
Query: 381 LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
P SWDE + E + YG I K+ + R +K+K FV F + +A+ C + I+ A++
Sbjct: 349 FPRSWDERNIEECCEGYGNIQKVNILR----SKKKVVSFVEFSSRKSALACVEGISKAKI 404
Query: 441 GEGDNKAKVRARLSRPLQRGK-GKHASRGDFRSGRG 475
D + K+ A L+RP + + +S+G F G
Sbjct: 405 --NDREVKLAASLARPQSKVQLANESSKGGFNVHSG 438
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 41/294 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L ++F+ VG V+ +R+ + T+++ G+A++ F E + +A+ +L
Sbjct: 82 LYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQL 141
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ +F+ N+ + +AL + +G +
Sbjct: 142 NYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFG-----KILS 196
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+ ++NE + G+ F+ + S A A K L + V G DR AK+
Sbjct: 197 CKVASNEHGSLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKI---- 252
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E A V+V L + ++ +L + YG+IT +A + K + FGFV
Sbjct: 253 ------EEARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQ-EGKSRGFGFV 305
Query: 421 TFDTHDAAVTCAKSINNAE-------LGEGDNKAKVRARLSRPLQRGKGKHASR 467
F H+ A + +N+ E LG K++ L R + K + S+
Sbjct: 306 NFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSK 359
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 116/271 (42%), Gaps = 33/271 (12%)
Query: 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQ 250
+R+ + +F+ LD+ + L F+ G++ ++ N + G+ F+ + + +
Sbjct: 162 QRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEH--GSLGYGFVHYESNDA 219
Query: 251 ARQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEK 296
A A+ + ++N K+ V +D +++ N+ T+E ++
Sbjct: 220 AEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKL 279
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDR 352
+ YG + + D EG +RGF F+ FS A A + L + LF + R
Sbjct: 280 FEKYG--KITSAAIATD--QEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLF-LGR 334
Query: 353 PAKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIEL 405
K S ++ +E +++ + V ++ LP +D++R++E +G T ++
Sbjct: 335 AQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKV 394
Query: 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
R P+ + FGFV + + A +N
Sbjct: 395 MRT-PTGASRGFGFVCYSAPEEANKAVAEMN 424
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 136 NVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPE-MVDAEEHDHHEMFQERRKR 194
N E E+ A E+ D E HGQ + + A +++ER E + A E +E K
Sbjct: 306 NFSEHEQAAKAVEELNDT-EFHGQ-KLFLGRAQKKSEREEELRRAYEAAKNEKLS---KY 360
Query: 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQA 254
+ +++ L +D + L++ F+ G T ++M P T ++GF F+ ++ E+A +A
Sbjct: 361 QGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTP-TGASRGFGFVCYSAPEEANKA 419
Query: 255 VTELKNPVINGKQCGVTPSQDSDT 278
V E+ +I + V +Q D
Sbjct: 420 VAEMNGKMIENRPLYVALAQRKDV 443
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQEAANKA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ +REL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 118/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E L+E +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ + G ++GF F+ + DA A K + + + G V+R A
Sbjct: 216 -KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 239 EKHEDANKAVEEMNG---KEMSGKSIFVGRAQKKVERQAELKRKFE----------QLKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 24/272 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD+ V L ++F QV +V +R+ + +++ G+A++ F++ + A A+ L
Sbjct: 37 LYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHL 96
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S ++ F+ N+ + +AL++ +G V +
Sbjct: 97 NFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFG--TVLSCKV 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DSN G ++G+ F++F S A + ++L G+ K + FI + I
Sbjct: 155 AVDSN--GQSKGYGFVQFESEESAEISIEKLN------GMLLNDKQVYVGHFIRHQERIR 206
Query: 371 A---QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A Q V+V LP + +D ++ L +G IT + + K K FGFV F D+
Sbjct: 207 ANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITS-AIVMTDSNGKSKCFGFVNFQNTDS 265
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
A + ++ L GD+K R R +R
Sbjct: 266 AAAAVEKLDGTVL--GDDKTLYVGRAQRKAER 295
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 34/270 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VF+ LD + LR F+ G V ++ ++ ++KG+ F++F + E A
Sbjct: 118 RKSGYANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVD-SNGQSKGYGFVQFESEESA 176
Query: 252 RQAVTELKNPVINGKQCGV------------TPSQDSDTLFLGNICKTWTKEALKEKLKH 299
++ +L ++N KQ V SQ ++ +++ N+ +T T + LK
Sbjct: 177 EISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAP 235
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
+G + ++ DSN G ++ F F+ F + A A ++L + G D+ V A
Sbjct: 236 HG--TITSAIVMTDSN--GKSKCFGFVNFQNTDSAAAAVEKLD--GTVLGDDKTLYVGRA 289
Query: 360 DSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNYGEITKIELA 406
+ E+ A+ + +++ L D+++++EL YG IT ++
Sbjct: 290 QRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVM 349
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ K GFV F + D A +N
Sbjct: 350 LDQ-HGLSKGSGFVAFSSPDEATKALNEMN 378
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 121/269 (44%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD----VLF------GVDRPA 354
+ ++ D N G ++GF F+ + DA A + + ++ V+F V+R A
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQEAANKA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ +REL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 118/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E L+E +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ + G ++GF F+ + DA A K + + + G V+R A
Sbjct: 216 -KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 239 EKHEDANKAVEEMNG---KEMSGKSIFVGRAQKKVERQAELKRKFE----------QLKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PTGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPTGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 118/260 (45%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 63 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGV-----DRPAKVSFAD 360
+D G ++G+ F+ + + A A K L + V G DR +K+
Sbjct: 181 AQDE--LGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKL---- 234
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V++ + S ++ +L + YGE+ + R+ + K + FGFV
Sbjct: 235 ------EEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRD-ENGKSRGFGFV 287
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F +H++A + +N+ E
Sbjct: 288 NFASHESAAKAVEELNDKEF 307
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L FSQ G + ++ + + +KG+ F+ + T E A
Sbjct: 144 RKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCKVAQD-ELGNSKGYGFVHYETAEAA 202
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
QA+ + ++N K+ V + +++ NI ++ + E +
Sbjct: 203 NQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLF 262
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ YG V T+ D N G +RGF F+ F+S A A + L ++ + V
Sbjct: 263 EPYG--EVVSATITRDEN--GKSRGFGFVNFASHESAAKAVEELNDKEFH---GKKLYVG 315
Query: 358 FADSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D+D++REL +YG IT +
Sbjct: 316 RAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFSSYGTITSAK 375
Query: 405 LARNMPSAKR 414
+ R+ SA+R
Sbjct: 376 VMRD--SAER 383
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V++ +D+ V ++ K+F GEV + + + K+
Sbjct: 223 HHIAKRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRD-ENGKS 281
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ FA+ E A +AV EL + +GK+ V +Q
Sbjct: 282 RGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQ 318
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQEAANKA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ +REL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 118/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E L+E +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ + G ++GF F+ + DA A K + + + G V+R A
Sbjct: 216 -KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 239 EKHEDANKAVEEMNG---KEMSGKSIFVGRAQKKVERQAELKRKFE----------QLKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|218184183|gb|EEC66610.1| hypothetical protein OsI_32844 [Oryza sativa Indica Group]
Length = 690
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 25/165 (15%)
Query: 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQA 254
K E+FVGGL KD V +D+R VFSQ GEV +R++ KK K AF+R+A + ++A
Sbjct: 252 KTLELFVGGLPKDCVEEDIRVVFSQCGEVESIRIV-----KKRKRIAFVRYADISATKKA 306
Query: 255 VTELKNPV-INGKQCGVT---PSQDSD---------TLFLGNICKTWTKEALKEKLKHYG 301
+TE K+ + +NGK V+ P + S T++L + ++W + ++E + YG
Sbjct: 307 LTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYG 366
Query: 302 VDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
N++ + ++ + +F+EFSSR A+ + + K +
Sbjct: 367 --NIQKVNIL-----RSKKKVVSFVEFSSRKSALACVEGISKAKI 404
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 342 QKRDVL-----FGVDRPAKVSFADSFIDPGDEI----------------MAQVKTVFVDG 380
+KR + A F D G + + +VKTV+++
Sbjct: 289 RKRIAFVRYADISATKKALTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEH 348
Query: 381 LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
P SWDE + E + YG I K+ + R +K+K FV F + +A+ C + I+ A++
Sbjct: 349 FPRSWDERNIEECCEGYGNIQKVNILR----SKKKVVSFVEFSSRKSALACVEGISKAKI 404
Query: 441 GEGDNKAKVRARLSRPLQRGK-GKHASRGDFRSGRG 475
D + K+ A L+RP + + +S+G F G
Sbjct: 405 --NDREVKLAASLARPQSKVQLANESSKGGFNVHSG 438
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL YG+ +++ + S K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-SSGKSKGFGFVSFEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N ++ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ +++ G ++GF F+ F DA A + + +D+ + V R K
Sbjct: 216 -KTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + D A +N +G
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVG 359
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 20/148 (13%)
Query: 130 DEHDDENVGEEEED--DLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEM 187
++H+D N EE + D+ G+M V G+ +++VE E + E ++
Sbjct: 239 EKHEDANKAVEEMNGKDI-NGKMVFV----GRAQKKVERQAELKRKFE----------QL 283
Query: 188 FQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F+
Sbjct: 284 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFS 341
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ ++A +AVTE+ ++ K V +Q
Sbjct: 342 SPDEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQEAANKA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ +REL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 118/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E L+E +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ + G ++GF F+ + DA A K + + + G V+R A
Sbjct: 216 -KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 239 EKHEDANKAVEEMNG---KEMSGKSIFVGRAQKKVERQAELKRKFE----------QLKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ +++L +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LK+ +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 33/169 (19%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V Y+ E ++ V+E+ +E +G G++ V G+ +++VE
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKE-------IG---------GKVIFV----GRAQKKVER 272
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
E + E ++ QER R + +++ LD + + LRK FS G +T
Sbjct: 273 QAELKRKFE----------QLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++M+ + ++KGF F+ F++ E+A +AVTE+ ++ K V +Q
Sbjct: 323 AKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +FS +G V +R+ + TK + G+A++ F+ E +QA+ +L
Sbjct: 49 LYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIEKL 108
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GK C + SQ +L F+ N+ + +AL + +G N+ +
Sbjct: 109 NYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFG--NILSSKI 166
Query: 311 VEDSNNEGMNRGFAFLEF---SSRSDAMDAFKRL----QKRDVLFGVDRPAKVSFADSFI 363
D G ++GF F+ F S+ ++A+DA + Q+ V + R + DS +
Sbjct: 167 ATDET--GKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKER----DSQL 220
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E A V+V + ++ +E G +T + L R P K K FGFV ++
Sbjct: 221 ---EETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERG-PDGKLKGFGFVNYE 276
Query: 424 THDAAVTCAKSINNAEL 440
H+ AV + +N AE
Sbjct: 277 DHNDAVKAVEELNGAEF 293
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 155 EEHGQGEEEVENA-GEEAERPEMVDAEEHDHHEMFQERRKRKE------------FEVFV 201
E+H + VE G E + E+ +E Q +K+ E +FV
Sbjct: 276 EDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFV 335
Query: 202 GGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261
LD + + L++ F+ G +T V++M + K+KGF F+ F++ E+A +A+TE
Sbjct: 336 KNLDDSIDDEKLQEEFAPFGNITSVKVM-RTENGKSKGFGFVCFSSPEEATKAITEKNQQ 394
Query: 262 VINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 395 IVAGKPLYVAIAQRKDV 411
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V +D + ++ ++ F ++G VT V L P K KGF F+ + A +AV EL
Sbjct: 230 VYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKL-KGFGFVNYEDHNDAVKAVEEL 288
Query: 259 KNPVINGKQCGVTPSQ------------------------DSDTLFLGNICKTWTKEALK 294
++ V +Q LF+ N+ + E L+
Sbjct: 289 NGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDDEKLQ 348
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ +G N+ + ++ N G ++GF F+ FSS +A A ++ V +P
Sbjct: 349 EEFAPFG--NITSVKVMRTEN--GKSKGFGFVCFSSPEEATKAITEKNQQIV---AGKPL 401
Query: 355 KVSFA 359
V+ A
Sbjct: 402 YVAIA 406
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 33/169 (19%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V Y+ E ++ V+E+ +E G++ V G+ +++VE
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKE----------------ISGKIIFV----GRAQKKVER 272
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
E + E ++ QER R + +++ LD + + LRK FS G +T
Sbjct: 273 QAELKRKFE----------QLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++M+ + ++KGF F+ F++ E+A +AVTE+ ++ K V +Q
Sbjct: 323 AKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 122/260 (46%), Gaps = 39/260 (15%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EV+VGG+ D+ DL+K+ VGEV EVR+M ++G+AF+ F T + A +AV E
Sbjct: 92 EVYVGGISSDISSQDLKKLCEPVGEVVEVRMMKG--KDDSRGYAFVTFRTKDLALEAVRE 149
Query: 258 LKNPVINGKQCGVTPSQ--------------DSDTLFLGNICKTWTKEALKEKLKHYGVD 303
L N + GK+ V+ SQ D + +E LK
Sbjct: 150 LNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDF------RKAVEEVGPGVLK----- 198
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI 363
DL V +N NRG+ F+E+ + + A A +++ + P VS+AD
Sbjct: 199 --ADLMKVSSTNR---NRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPT-VSWADP-K 251
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD--FGFVT 421
+ +QVK+V+V LP + + +++L +++G+ITK+ L PS D +GFV
Sbjct: 252 NNDSASTSQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLP---PSRGGHDNRYGFVH 308
Query: 422 FDTHDAAVTCAKSINNAELG 441
F A+ ++ EL
Sbjct: 309 FKDRSMAMRALQNTERYELA 328
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 33/257 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ + L ++FS +G+V+ +R+ + TK++ G+A++ + V+ +A+ EL
Sbjct: 62 LYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDEL 121
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ G+ + SQ +F+ N+ +AL + +G L+
Sbjct: 122 NYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFG----RILSC 177
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++N G ++GF F+ F S A A + L +V G DR +K+
Sbjct: 178 KVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKL---- 233
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E++ V+V + E+ V+EL +G +T L ++ K + F FV
Sbjct: 234 ------EEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDA-EGKSRGFAFV 286
Query: 421 TFDTHDAAVTCAKSINN 437
++ H+AAV +S+N+
Sbjct: 287 NYEEHEAAVKSIESLND 303
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 122/276 (44%), Gaps = 32/276 (11%)
Query: 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQ 250
+R+ E VF+ L + L FS G + ++ + ++KGF F+ F + E
Sbjct: 142 KRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-NFGQSKGFGFVHFESPEA 200
Query: 251 ARQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTWTKEALKEK 296
A+ A+ + ++N + V P + +++ NI ++E +KE
Sbjct: 201 AQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKEL 260
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDR 352
+G V L +D+ EG +RGFAF+ + A+ + + L +D L+ V R
Sbjct: 261 FTPFGT--VTSFYLEKDA--EGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLY-VGR 315
Query: 353 PAKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIEL 405
K S + E + + + V FV L S D+++++E +++G I+ +++
Sbjct: 316 AQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKV 375
Query: 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ S K K FGFV+F + + A +N L
Sbjct: 376 MID-ESGKSKGFGFVSFSSPEEASRAISEMNQHMLA 410
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +FV LD + + L++ F G ++ V++M++ ++ K+KGF F+ F++ E+A
Sbjct: 340 KSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMID-ESGKSKGFGFVSFSSPEEAS 398
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDT 278
+A++E+ ++ GK V +Q D
Sbjct: 399 RAISEMNQHMLAGKPLYVALAQRKDV 424
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 30/258 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L +VF+ VG V +R+ + T+++ G+A++ F V A +A+ L
Sbjct: 36 LYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDTL 95
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GKQC + S TL F+ N+ KT +AL + +G N+ +
Sbjct: 96 NYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFG--NILSCKV 153
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------- 363
D ++G +RG+ F+ F + A A +L G+ K + F
Sbjct: 154 ATD--DDGKSRGYGFVHFENDESAHKAITKLN------GMMIGEKAVYVGPFQKHAERAE 205
Query: 364 DPGDEIMAQVKTVFVDGLPASW-DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
GDE + V++ LP SW E+ V++ + +G+IT + + + K + F FV +
Sbjct: 206 QHGDEP-RKFTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTD---RKGRRFAFVNY 261
Query: 423 DTHDAAVTCAKSINNAEL 440
+ D+A +++N ++
Sbjct: 262 EDFDSAAKAVEAMNGKDM 279
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 109/278 (39%), Gaps = 54/278 (19%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VFV LDK + L FS G + ++ + K++G+ F+ F E A
Sbjct: 117 RKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVATD-DDGKSRGYGFVHFENDESA 175
Query: 252 RQAVTELKNPVINGKQCGVTPSQDS--------------DTLFLGNICKTWTKEA-LKEK 296
+A+T+L +I K V P Q +++ ++ ++WT E +++
Sbjct: 176 HKAITKLNGMMIGEKAVYVGPFQKHAERAEQHGDEPRKFTNVYIKHLPESWTTEEDVQKA 235
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---------- 346
+ +G + + + D R FAF+ + A A + + +D+
Sbjct: 236 FEEFG--KITSVAIQTDRKG----RRFAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDAGK 289
Query: 347 -----------------LFGVDRPAKVS----FADSFIDPGDE-IMAQVKTVFVDGLPAS 384
L+ K + F E + Q ++V LP
Sbjct: 290 GEEESTEEGSDEMPEYKLYVTRAQTKTERSAELRNKFQAKNTEKVGNQSCNLYVKNLPED 349
Query: 385 WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
D++++R++ + +GEIT ++ + + + FGFV F
Sbjct: 350 VDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCF 387
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E+ + ++V L +DV + LR++F Q GE+T ++M++ T ++GF F+ FA
Sbjct: 332 EKVGNQSCNLYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQA 391
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD 277
+A+ + + GK V ++ D
Sbjct: 392 DGEKAIQAMHLKLYGGKPLFVAVAEKRD 419
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 51 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ + +AL + +G L+
Sbjct: 111 NYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGT----VLSC 166
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
++ G ++G+ F+ + + A +A K L + V G + R + S
Sbjct: 167 KVATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKL---- 222
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E+ AQ ++V L +D EL K YG +T ++ + K K FGFV F+
Sbjct: 223 ---EEMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVD-EEGKSKGFGFVNFE 278
Query: 424 THDAAVTCAKSINNAEL 440
THD A +N+ EL
Sbjct: 279 THDEAQKAVDELNDFEL 295
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 132/318 (41%), Gaps = 32/318 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G V ++ + +T ++KG+ F+ + T E A
Sbjct: 132 RKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCKVATD-ETGRSKGYGFVHYETAEAA 190
Query: 252 RQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V L++ N+ T++ E
Sbjct: 191 ENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELF 250
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
K YG NV + D EG ++GF F+ F + +A A L ++ LF V R
Sbjct: 251 KKYG--NVTSAVISVDE--EGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLF-VSRA 305
Query: 354 AKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELA 406
K + S+ E +++ + V ++ L D+D++R + +G IT ++
Sbjct: 306 QKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVM 365
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHAS 466
R+ + K FGFV F + D A +NN +G + R Q+ + + A
Sbjct: 366 RD-EKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQ 424
Query: 467 RGDFRSGRGTGRATRGSW 484
R R + GS+
Sbjct: 425 RNQIRMQQAAAAGLPGSY 442
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 164 VENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV 223
V A ++AER E + ++ K + +++ L+ DV D LR F G +
Sbjct: 302 VSRAQKKAEREE--ELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTI 359
Query: 224 TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
T ++M + + ++KGF F+ F++ ++A +AV E+ N +I K V+ +Q
Sbjct: 360 TSCKVMRD-EKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 409
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 137/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D+ L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 132 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAEMG 185
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ R++EL YG+ +++ + P+ K + FGFV+++ H+
Sbjct: 186 AKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHED 244
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N EL G K + +A L R ++ K + SR
Sbjct: 245 ANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISR 291
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 118/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 159
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + LKE YG
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYG--- 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG-----VDRPA 354
+ L++ ++ G +RGF F+ + DA A + L + V G ++R A
Sbjct: 217 -KTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 275
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 276 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEG 331
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 332 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 360
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 193 KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
K KEF V++ D+ L+++F + G+ V++M +P T K++GF F+ + E A
Sbjct: 187 KAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDA 245
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
+AV E+ +NGK V +Q L++ N+ T
Sbjct: 246 NKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 305
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E L+++ +G + L EG ++GF F+ FSS +A A + R V
Sbjct: 306 IDDEKLRKEFSPFGSITSAKVML-----EEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 359
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + E+ G+ ++++E E + E ++ Q
Sbjct: 240 EKHEDANKAVEEMNG---TELNGKTVFVGRAQKKMERQAELKRKFE----------QLKQ 286
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 287 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSP 344
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 345 EEATKAVTEMNGRIVGSKPLYVALAQ 370
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 33/169 (19%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V Y+ E ++ V+E+ +E G++ V G+ +++VE
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKE----------------ISGKIIFV----GRAQKKVER 272
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
E + E ++ QER R + +++ LD + + LRK FS G +T
Sbjct: 273 QAELKRKFE----------QLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++M+ + ++KGF F+ F++ E+A +AVTE+ ++ K V +Q
Sbjct: 323 AKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 28/288 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ L
Sbjct: 42 LYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 101
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ L F+ N+ ++ +AL + +G E L+
Sbjct: 102 NYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFG----EILSC 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
+ +G +RGFAF+ + + A A K L + V G + + + S A
Sbjct: 158 KVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKA---- 213
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E A VFV + S E +L+ +GE I L+ + K K FGFV +
Sbjct: 214 ---EEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLD-EEGKSKGFGFVNYV 269
Query: 424 THDAAVTCAKSINNAEL-GEGDNKAKVRARLSRPLQRGKGKHASRGDF 470
+H+AA +N+ E+ G+ + + R+ R + K R +F
Sbjct: 270 SHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEF 317
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 120/274 (43%), Gaps = 30/274 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ GE+ ++ ++ + K++GFAF+ + T E A
Sbjct: 123 RKTGQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVGVD-EDGKSRGFAFVHYQTGEAA 181
Query: 252 RQAVTELKNPVIN------GKQCGVTPSQDS--------DTLFLGNICKTWTKEALKEKL 297
A+ + ++N G G Q +F+ N+ + T++ ++ +
Sbjct: 182 DAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLV 241
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+G E +++ + EG ++GF F+ + S A A L ++V L+
Sbjct: 242 SKFG----ETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQ 297
Query: 354 AKVS----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
+V + + E A+ V +V L WD+DR+R ++G IT ++ +
Sbjct: 298 KRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMK 357
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ R +FGFV + + + A +N +G
Sbjct: 358 DERGVSR-NFGFVCYSSPEEATKAVSEMNGKMIG 390
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 38/206 (18%)
Query: 184 HHEMFQERRKRKEFE------VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH +ER+ + E + VFV +D V + + S+ GE + L ++ + K+
Sbjct: 202 HHIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLD-EEGKS 260
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ---DSDT---------------- 278
KGF F+ + + E A +AV EL + +NG++ +Q + DT
Sbjct: 261 KGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAK 320
Query: 279 -----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333
L++ N+ W + L+ + +G + +++D G++R F F+ +SS +
Sbjct: 321 SAGVNLYVKNLDDEWDDDRLRAEFDSFG--TITSCKVMKD--ERGVSRNFGFVCYSSPEE 376
Query: 334 AMDAFKRLQKRDVLFGVDRPAKVSFA 359
A A + + + G +P V+ A
Sbjct: 377 ATKAVSEMNGK--MIG-SKPLYVALA 399
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D+ L + FS G V +R+ + T+++ G+A++ F+ A +A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL YG+ +++ + P+ K + FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMD-PTGKSRGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N EL G K + +A L R + K + SR
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISR 290
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 115/269 (42%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVSFA 359
+ L++ + G +RGF F+ + DA A + L + V G R K +
Sbjct: 216 -KTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVG--RAQKKNER 272
Query: 360 DSFIDPGDEIMAQVKT-------VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
+ + E++ Q + +++ L + D++++R+ +G IT ++ +
Sbjct: 273 QAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 31/179 (17%)
Query: 193 KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
K KEF V++ D+ + L+++F + G+ V++MM+P T K++GF F+ + E A
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDA 244
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
+AV ++ +NGK V +Q + L++ N+ T
Sbjct: 245 NKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDT 304
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E L+++ +G +T + EG ++GF F+ FSS +A A + R V
Sbjct: 305 IDDEKLRKEFSPFG-----SITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N E D+ E+ G+ +++ E E + EM+ Q
Sbjct: 239 EKHEDANKAVE---DMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLK----------Q 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 33/290 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 14 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 73
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ + SQ +L F+ N+ K +AL + +G N+ +
Sbjct: 74 NFDAIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFG--NILSCKI 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
D N + G+ F+ F + A ++ +++ G+ K F F+ + +
Sbjct: 132 AMDQNG---SLGYGFVHFETEEAARNSIEKVN------GMLLNGKKVFVGRFMSRKERLE 182
Query: 370 -----MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+ V+V L + D+ ++RE+ + +G+I ++ N +++ FGFV+FD
Sbjct: 183 MLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKMM-NTEEGQKRGFGFVSFDD 241
Query: 425 HDAAVTCAKSINNAE-------LGEGDNKAKVRARLSRPLQRGKGKHASR 467
H+AA + +NN E +G KA+ +A L +R K + +R
Sbjct: 242 HEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINR 291
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 34/263 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK++ L FS G + ++ M+ + G+ F+ F T E AR ++ ++
Sbjct: 102 IFIKNLDKNIDNKALYDTFSAFGNILSCKIAMD--QNGSLGYGFVHFETEEAARNSIEKV 159
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++NGK+ V ++ +++ N+ +T + L+E + +G
Sbjct: 160 NGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFG--- 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADS 361
+ ++ + EG RGF F+ F A A + L ++V V R K + +
Sbjct: 217 -KIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQA 275
Query: 362 FIDPGDEIMA-------QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
+ E M Q ++V L D++R+R+ +G IT AR M R
Sbjct: 276 ELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITS---ARVMTEGGR 332
Query: 415 -KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 TKGFGFVCFSSPEEATKAVTEMN 355
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 78 DEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENV 137
D+ K+ + Y K+ +DD + E +G + K E+ Q+ G DD
Sbjct: 186 DKAKKFTNVYVKNLNETMDDKKLREMFEVFGKI-ISAKMMNTEEGQKRGFGFVSFDDHEA 244
Query: 138 GEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEF 197
+ ++L E+E G+ +++ E E E+ E + E + ++
Sbjct: 245 AAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQ---------GV 295
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++V LD+ + + LRK FSQ G +T R+M + + KGF F+ F++ E+A +AVTE
Sbjct: 296 NLYVKNLDEQIDDERLRKEFSQFGTITSARVM--TEGGRTKGFGFVCFSSPEEATKAVTE 353
Query: 258 LKNPVINGKQCGVTPSQ 274
+ ++ K V +Q
Sbjct: 354 MNGRIVVAKPLYVALAQ 370
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 34/205 (16%)
Query: 193 KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
K K+F V+V L++ + LR++F G++ + MMN + + +GF F+ F E A
Sbjct: 187 KAKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAK-MMNTEEGQKRGFGFVSFDDHEAA 245
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
+AV EL N + GK+ V +Q L++ N+ +
Sbjct: 246 AKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQ 305
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347
E L+++ +G +T G +GF F+ FSS +A A + R V
Sbjct: 306 IDDERLRKEFSQFGT-----ITSARVMTEGGRTKGFGFVCFSSPEEATKAVTEMNGRIV- 359
Query: 348 FGVDRPAKVSFADSFIDPGDEIMAQ 372
V +P V+ A D + AQ
Sbjct: 360 --VAKPLYVALAQRKEDRKAHLAAQ 382
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +VF+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 49 LYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQL 108
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 109 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG--NVLSCKV 166
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
D + G ++G+ F+ + + A +A K L + V G P K +
Sbjct: 167 ATDEH--GNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKI---- 220
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
DE+ AQ ++V L ++ EL +G IT L+++ K + FGFV F++H
Sbjct: 221 -DEMKAQYTNIYVKNLDPELGQEGFEELFGKFGNITSAALSKD-EEGKSRGFGFVNFESH 278
Query: 426 DAAVTCAKSINNAEL 440
+ A +++++ E+
Sbjct: 279 EQAAAAVETLHDTEI 293
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 32/275 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G V ++ + + +KG+ F+ + T E A
Sbjct: 130 RKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGNSKGYGFVHYETAEAA 188
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V P ++ + +++ N+ +E +E
Sbjct: 189 ENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQYTNIYVKNLDPELGQEGFEELF 248
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+G N+ L +D EG +RGF F+ F S A A + L ++ L+ V R
Sbjct: 249 GKFG--NITSAALSKDE--EGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLY-VARA 303
Query: 354 AKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELA 406
K S S+ + E +++ + V ++ L D++++R + +G IT ++
Sbjct: 304 QKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVM 363
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
R+ + K FGFV F + D A +NN +G
Sbjct: 364 RDEKNTS-KGFGFVCFSSPDEATKAVSEMNNKMIG 397
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +++ L+ D+ + LR F G +T ++M + + +KGF F+ F++ ++A
Sbjct: 327 KYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRD-EKNTSKGFGFVCFSSPDEAT 385
Query: 253 QAVTELKNPVINGKQCGVTPSQ 274
+AV+E+ N +I K V+ +Q
Sbjct: 386 KAVSEMNNKMIGSKPLYVSLAQ 407
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 24/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +V L ++F+ +G V +R+ + T+++ G+A++ F A +A+ L
Sbjct: 47 LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDTL 106
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ +F+ N+ KT +AL + +G N+ +
Sbjct: 107 NYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFG--NILSCKV 164
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
V D N ++G+ F+ + ++ A A + + + V G+ P K ++
Sbjct: 165 VTDENG---SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRK-----ERVEL 216
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
G+ + + VFV LP + + ++ +G+IT + + ++ K K FGFV ++
Sbjct: 217 GEGV-TKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKV 275
Query: 426 DAAVTCAKSINNAELG 441
+ A ++N EL
Sbjct: 276 EDAQAAVNALNGTELA 291
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 31/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VF+ LDK + L FS G + +++ + +KG+ F+ + T E A
Sbjct: 128 RKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDEN--GSKGYGFVHYETQEAA 185
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDTL----------FLGNICKTWTKEALKEKLK 298
A+ ++ VINGKQ V P ++ L F+ N+ + T AL +
Sbjct: 186 ETAIAKVNGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFS 245
Query: 299 HYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRPA 354
+G + + +++ S+++ ++GF F+ + DA A L ++ LF V R
Sbjct: 246 KFG--KITSVVIMKSSDDD-KSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLF-VARAQ 301
Query: 355 KVSFADSFIDPGDEIM-------AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + ++ + + + Q ++V L + DED++R +G IT +++ R
Sbjct: 302 KKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMR 361
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ K + FGF+ F + + A +N
Sbjct: 362 D-EKGKSRGFGFICFSSAEEATKAVTEMN 389
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 39/235 (16%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEF--------EVFVGGLDKDV 208
H + +E E A A+ MV + +F R++R E VFV L +D
Sbjct: 178 HYETQEAAETA--IAKVNGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDT 235
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
L +FS+ G++T V +M + K+KGF F+ + VE A+ AV L + GK
Sbjct: 236 TDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTL 295
Query: 269 GVTPSQDSD------------------------TLFLGNICKTWTKEALKEKLKHYGVDN 304
V +Q L++ N+ ++ ++ + +G
Sbjct: 296 FVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFG--T 353
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
+ + ++ D +G +RGF F+ FSS +A A + + + G +P V+ A
Sbjct: 354 ITSVKIMRDE--KGKSRGFGFICFSSAEEATKAVTEMNGQTIQ-GFPKPLYVALA 405
>gi|224136798|ref|XP_002322418.1| predicted protein [Populus trichocarpa]
gi|222869414|gb|EEF06545.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
++ V TV V GL SW+ +++EL K YGEI + L RN AK KDFGF+ F +H +
Sbjct: 350 QLEIHVTTVHVKGLVKSWNVKKLKELCKQYGEIINVLLPRNF-GAKHKDFGFIAFSSHKS 408
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
AV C + IN +LGE + + KV+A L++ RG + R
Sbjct: 409 AVACVEGINKTQLGE-ETQTKVKADLAKTRFRGAAQKKRR 447
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 19/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +V L +FSQ+ V VR+ + T+ + G+ ++ ++ A A+ L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S LF+ N+ + +AL E +G NV +
Sbjct: 87 NYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFG--NVLSCKV 144
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DSN G ++G F++F + A +A ++L R + D+ V + F+ +
Sbjct: 145 AMDSN--GHSKGHGFVQFDNDQSAKNAIEKLDGRLM---NDKKVYVGY---FVRCQERSS 196
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
+ V+V L S+ + +++L +G IT +++ ++ + K FGFV F + D+A T
Sbjct: 197 PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKD-ENGNSKRFGFVNFQSSDSAAT 255
Query: 431 CAKSINNAELGEG 443
+ +N + +G
Sbjct: 256 AVEKLNGSTTNDG 268
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 33/222 (14%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
QER K V+V L + +DL+++F+ G +T V++M + + +K F F+ F +
Sbjct: 192 QERSSPKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKD-ENGNSKRFGFVNFQSS 250
Query: 249 EQARQAVTELKNPVIN-GKQCGVTPSQDSD------------------------TLFLGN 283
+ A AV +L N GK V +Q L+L N
Sbjct: 251 DSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKN 310
Query: 284 ICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343
I K+ +E LKE +G + ++ D+ G ++G F+ F++ +A A +
Sbjct: 311 IDKSLNEEKLKELFSEFGT--ITSCKVMSDA--RGRSKGVGFVAFTTPEEASKAIDEMNG 366
Query: 344 RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASW 385
+ + +P VS A + ++ A + V G A +
Sbjct: 367 KII---GQKPVYVSVAQRKEERKAQLQAHFPAIQVSGGNAGY 405
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 126/253 (49%), Gaps = 20/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L K FS+VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 12 LYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ L F+ N+ K+ ++L E +G + L+
Sbjct: 72 NFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFG----KILSS 127
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
S++ G ++G+AF+ F S+S A A + + + F D V S D E+
Sbjct: 128 KVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGK---FLKDCKVFVGRFKSRKDREAELR 183
Query: 370 --MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
++ V++ D++R+RE+ YG I +++ N K + FGFV+FD+H+A
Sbjct: 184 NKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTN-SCGKSRGFGFVSFDSHEA 242
Query: 428 AVTCAKSINNAEL 440
A + +N E+
Sbjct: 243 ARKAVEEMNGKEV 255
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 120/272 (44%), Gaps = 42/272 (15%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L + FS G++ ++M + +KG+AF+ F + A +A+ E+
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVM--SDDRGSKGYAFVHFQSQSAADRAIEEM 157
Query: 259 KNPVINGKQCGV----------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYG- 301
+ K C V + + +++ N E L+E YG
Sbjct: 158 NGKFL--KDCKVFVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGR 215
Query: 302 VDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LF------GVD 351
+ +V+ +T N+ G +RGF F+ F S A A + + ++V +F V+
Sbjct: 216 ILSVKVMT-----NSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVE 270
Query: 352 RPAKVSFADSFIDPGDEIM--AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
R A++ F E + Q +++ L + D++++R+ ++G I+++++ +
Sbjct: 271 RQAELK--QMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQ-- 326
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FG + F + + A +N LG
Sbjct: 327 EEGQSKGFGLICFSSSEDAARAMTVMNGRILG 358
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 186 EMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ +K + ++++ LD+++ + LRK FS G ++ V++M + ++KGF
Sbjct: 277 QMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVM--QEEGQSKGF 334
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F++ E A +A+T + ++ K + +Q
Sbjct: 335 GLICFSSSEDAARAMTVMNGRILGSKPLNIALAQ 368
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 29/253 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L VF+Q+G V VR+ + T+K+ G+A++ + T A +A+ L
Sbjct: 36 LYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEML 95
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
ING+ + S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 96 NFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG--NILSCKV 153
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------- 363
D++ E ++G+ F+++ A A ++L G+ K + FI
Sbjct: 154 ATDASGE--SKGYGFVQYERDEAAHAAIEKLN------GMLMNDKKVYVGPFIRKQERDN 205
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
PG+ + VFV L + ED +RE+ +G IT + + R + K FGFV F+
Sbjct: 206 SPGN---VKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMRE-GDGRSKCFGFVNFE 261
Query: 424 THDAAVTCAKSIN 436
+ D A + +N
Sbjct: 262 SPDEAALAVQDLN 274
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 132/299 (44%), Gaps = 43/299 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L F G + ++ + + ++KG+ F+++ E A
Sbjct: 117 RKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATD-ASGESKGYGFVQYERDEAA 175
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSDT---------LFLGNICKTWTKEALKEKLKH 299
A+ +L ++N K+ V P Q+ D +F+ N+ +T T++ L+E
Sbjct: 176 HAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTEDDLREIFGK 235
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+G ++V +G ++ F F+ F S +A A + L + D + V R K
Sbjct: 236 FGTIT----SVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYVGRAQKK 291
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F + + D+ Q +++ L + D++++REL +G IT ++ R
Sbjct: 292 SEREMELKEKFEKNLQETADKY--QNTNLYLKNLDDTVDDEKLRELFAEFGAITSCKVMR 349
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG-----------DNKAKVRARLSR 455
+ A R GFV F + + A +NN +G D KA+++A+ S+
Sbjct: 350 DSNGASRGS-GFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRKEDRKARLQAQFSQ 407
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 47 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 106
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 107 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG--NILSCKV 164
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 165 AQDEFAN--SKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 216
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A +++ + +D R + + +GEIT L+ + K + FGFV +
Sbjct: 217 KFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQ-DGKSRGFGFVNYAN 275
Query: 425 HDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 276 HESAEAAVAEMNEKEV 291
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 100/244 (40%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 128 RKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQD-EFANSKGYGFVHYETAEAA 186
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI T + +
Sbjct: 187 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMF 246
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D +G +RGF F+ +++ A A + +++V + V
Sbjct: 247 EAFG--EITSATLSHDQ--DGKSRGFGFVNYANHESAEAAVAEMNEKEV---KSQKLYVG 299
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++R+L YG IT +
Sbjct: 300 RAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAK 359
Query: 405 LARN 408
+ R+
Sbjct: 360 VMRD 363
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 120/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + TKK+ G+A++ F +A+ EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+++G+ C + SQ +L F+ N+ +AL + +G L+
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFG----RILSC 175
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGV-----DRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 176 KVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKF---- 231
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V+V L D + E+ K +G +T + L + K + FGFV
Sbjct: 232 ------EEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFV 284
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H++A+ K +N+ E+
Sbjct: 285 NFENHESALNAVKEMNDKEI 304
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V L +V ++F G VT V L + Q K++GF F+ F E A AV E+
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETD-QEGKSRGFGFVNFENHESALNAVKEM 299
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ I+G++ V +Q LF+ N+ + E L+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E+ K +G + +V+D+ G ++GF F+ FSS +A A + +R +
Sbjct: 360 EEFKPFGTITSARV-MVDDA---GKSKGFGFVCFSSPEEATKAITEMNQRMI 407
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + + L + F G +T R+M++ K+KGF F+ F++ E+A +A+TE+
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEM 402
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+I GK V +Q D
Sbjct: 403 NQRMIQGKPLYVALAQRKDV 422
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
R+ +F+ LDK + L FS G + ++ M+ ++KGF F+++ E A
Sbjct: 205 RRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEESA 263
Query: 252 RQAVTELKNPVINGKQCGVTP---------SQDS---DTLFLGNICKTWTKEALKEKLKH 299
+ A+ L +IN K V P S D + +F+ N+ ++ TKE L +
Sbjct: 264 QSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSE 323
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL---FGVDRPAKV 356
YG + + D G +R F F+ F S DA A + L + + + V R K
Sbjct: 324 YGTITSAVVMIGMD----GKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKK 379
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F S D D+ Q +++ L +D++REL N+G+IT ++ R
Sbjct: 380 SEREMDLKRRFEQSMKDAADKYQGQ--NLYLKNLDDGITDDQLRELFSNFGKITSCKIMR 437
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ + K GFV+F T + A +N
Sbjct: 438 DQ-NGVSKGSGFVSFSTREEASQALTEMN 465
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 17/253 (6%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L ++FSQ G+V VR+ + ++++ G+A++ ++ A +A+ L
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+N K V S S +F+ N+ KT + L + +G L+
Sbjct: 184 NFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA----ILSC 239
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS-FADSFIDPGDEI 369
++ G ++GF F+++ A A K L + + D+P V F
Sbjct: 240 KVAMDDIGQSKGFGFVQYEKEESAQSAMKSL---NGMLINDKPVYVGPFLRKQERDNSSD 296
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
A+ VFV L S ++ + ++ YG IT + M K + FGFV F++ D A
Sbjct: 297 KAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGM-DGKSRCFGFVNFESPDDAA 355
Query: 430 TCAKSINNAELGE 442
+ +N ++ +
Sbjct: 356 RAVEELNGKKIND 368
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 32/191 (16%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K K VFV L + +DL KVFS+ G +T +M+ K++ F F+ F + + A
Sbjct: 297 KAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIG-MDGKSRCFGFVNFESPDDAA 355
Query: 253 QAVTELKNPVINGKQCGVTPSQ------------------------DSDTLFLGNICKTW 288
+AV EL IN K+ V +Q L+L N+
Sbjct: 356 RAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348
T + L+E ++G + ++ D N G+++G F+ FS+R +A A + + +
Sbjct: 416 TDDQLRELFSNFG--KITSCKIMRDQN--GVSKGSGFVSFSTREEASQALTEMNGKMI-- 469
Query: 349 GVDRPAKVSFA 359
+P V+FA
Sbjct: 470 -SGKPLYVAFA 479
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
V E DD A E ++ E V A +++ER EM D + M K +
Sbjct: 346 VNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSER-EM-DLKRRFEQSMKDAADKYQG 403
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
+++ LD + D LR++FS G++T ++M + Q +KG F+ F+T E+A QA+T
Sbjct: 404 QNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRD-QNGVSKGSGFVSFSTREEASQALT 462
Query: 257 ELKNPVINGKQCGVTPSQ 274
E+ +I+GK V +Q
Sbjct: 463 EMNGKMISGKPLYVAFAQ 480
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 24/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV---EQARQAV 255
++VG L+KDV L ++FS VG V +R+ + T+++ G+A++ + + + A +A+
Sbjct: 25 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRAM 84
Query: 256 TELKNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVED 307
L V+NGK + S + +F+ N+ KT +AL + +G +
Sbjct: 85 ETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG--KILS 142
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+ D+N G+++G+ F+ F ++ A A + + ++ + K+ + F D
Sbjct: 143 CKVATDAN--GVSKGYGFVHFEDQAAADRAIQTVNQKKI------EGKIVYVAPFQKRAD 194
Query: 368 EIMAQV--KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
A+ VFV LPA +D + ++ +GEIT + ++ K FGF+ F
Sbjct: 195 RPRARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKD-DKGGSKGFGFINFKDA 253
Query: 426 DAAVTCAKSINNAEL 440
++A C + +N E+
Sbjct: 254 ESAAKCVEYLNEREM 268
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 19/248 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G++ ++ + +KG+ F+ F A +A+ +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGV-SKGYGFVHFEDQAAADRAIQTV 174
Query: 259 KNPVINGKQCGVTPSQD------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
I GK V P Q + TL+ K + ++L ++ E + V
Sbjct: 175 NQKKIEGKIVYVAPFQKRADRPRARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVV 234
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADSFIDPGDE- 368
+++G ++GF F+ F A + L +R++ R K + ++ + E
Sbjct: 235 MKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEE 294
Query: 369 ------IMAQVKTVFVDGLP-ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVT 421
+ Q ++V L D+D +REL N G IT ++ ++ S K K FGFV
Sbjct: 295 SKQERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVMKD-GSGKSKGFGFVC 353
Query: 422 FDTHDAAV 429
F +HD A
Sbjct: 354 FTSHDEAT 361
>gi|147853770|emb|CAN79549.1| hypothetical protein VITISV_022646 [Vitis vinifera]
Length = 798
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 18/143 (12%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
F VF+ LD VFS GE+ EVR MM Q K+KG+ F+RF T E A +A+
Sbjct: 139 FLVFLEALDP---------VFSTCGEIIEVR-MMTDQNGKSKGYCFVRFTTKEAANKAIK 188
Query: 257 ELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE--DLTLVEDS 314
E ++ GK+ GV PS D TLF GN+ K W+ + +K+ +V DL + S
Sbjct: 189 EKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDWSPDEF-DKMVCQAFQDVTSVDLAMPFGS 247
Query: 315 NNEGM-----NRGFAFLEFSSRS 332
+ + NRGFAF++FSS +
Sbjct: 248 GDTSLGQKQQNRGFAFVKFSSHA 270
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 118/257 (45%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ L
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ ++ +AL + +G + L+
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 165
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
++ G +RGFAF+ +S+ A A K L + V G V + ++S
Sbjct: 166 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKV---- 221
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E+ AQ V++ + + +L+K +G + L+R+ K FGFV ++
Sbjct: 222 ---EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EQGVSKGFGFVNYE 277
Query: 424 THDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 278 NHESAKQAVDELNEKEI 294
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 121/274 (44%), Gaps = 30/274 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G++ ++ + + K++GFAF+ ++T E A
Sbjct: 131 RKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAA 189
Query: 252 RQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V +++ N+ T ++ +
Sbjct: 190 DAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLV 249
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFG---- 349
K +G +++ + +G+++GF F+ + + A A L ++++ L+
Sbjct: 250 KPFG----PTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQ 305
Query: 350 --VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
+R A++ + +E + +++ L WD+DR+R + +G IT ++ R
Sbjct: 306 TKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMR 365
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ S + FGFV + + D A +N +G
Sbjct: 366 D-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIG 398
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 58 LYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 117
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 118 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFG--NVLSCKV 175
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG---- 366
D N G +RGF F+ + + A A K + G+ K F +I
Sbjct: 176 ATDEN--GRSRGFGFVHYDTAEAADTAIKAVN------GMLLNDKKVFVGHYISKKERQA 227
Query: 367 --DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
DE +Q ++V L +D ++ +GE+T + ++ K K FGFV F
Sbjct: 228 HIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKD-EEGKSKGFGFVNFKD 286
Query: 425 HDAAVTCAKSINNAEL 440
H++A ++++ EL
Sbjct: 287 HESAQAAVDALHDTEL 302
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 156/391 (39%), Gaps = 51/391 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G V ++ + + +++GF F+ + T E A
Sbjct: 139 RKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATD-ENGRSRGFGFVHYDTAEAA 197
Query: 252 RQAVTELKNPVINGKQCGV---------------TPSQDSDTLFLGNICKTWTKEALKEK 296
A+ + ++N K+ V SQ ++ L++ N+ T + +
Sbjct: 198 DTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTN-LYVKNLDTEVTDDEFNDM 256
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDR 352
+G E + V + EG ++GF F+ F A A L ++ LF V R
Sbjct: 257 FAKFG----EVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLF-VTR 311
Query: 353 PAKVS-----FADSFIDPGDEIMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIEL 405
K + S+ E +++ + +++ L D+D++R + +G IT ++
Sbjct: 312 AQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKI 371
Query: 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHA 465
R+ K FGFV + + + A +NN LG R Q+ + + A
Sbjct: 372 MRD-EKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQLESQIA 430
Query: 466 SRGDFR----SGRGTGRATRGSWGLPSPRSLPGRSARG-IGSRLPPASVKRPVPVRDRRP 520
+R +FR + G A P RG +G P + P RP
Sbjct: 431 ARNNFRMQQAAAAGIPNAYLNGPIYYPPGPGGYPQGRGMMGYGGPQPGIMPP------RP 484
Query: 521 IMSMTARARPMPP---PPPRSYDRRAPVPSY 548
+ + PMPP PP+ Y PVPSY
Sbjct: 485 RYAPNGQGMPMPPYGQGPPQGY---GPVPSY 512
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 30/168 (17%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V++ D E+ V + HD E G++ A+ + E EEE+
Sbjct: 279 FGFVNFKDHESAQAAVDAL------HDTELNGKKLFVTRAQKKAER--------EEELRK 324
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
+ E+A+ ++ K + +++ L+ D+ D LR F G +T
Sbjct: 325 SYEQAK---------------MEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSC 369
Query: 227 RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++M + + +KGF F+ +++ E+A +AV E+ N ++ K V+P+Q
Sbjct: 370 KIMRD-EKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQ 416
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V + + + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 52 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 111
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 112 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 170 AQDE--FGNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 221
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V+V + ++ REL +G+IT ++R+ S K + FGFV +
Sbjct: 222 KFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRD-DSGKSRGFGFVNYVD 280
Query: 425 HDAAVTCAKSINNAEL 440
H+ A T +N+ +
Sbjct: 281 HENAQTAVDDLNDKDF 296
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E NA + + D + H + ++ R+ K FE V+V +D +V
Sbjct: 184 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK-FEEMKANFTNVYVKNIDPEV 242
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
++ R++F + G++T + + + K++GF F+ + E A+ AV +L + +G++
Sbjct: 243 TDEEFRELFGKFGDITSATISRD-DSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKL 301
Query: 269 GVTPSQ 274
V +Q
Sbjct: 302 YVGRAQ 307
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 120/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + TKK+ G+A++ F +A+ EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+++G+ C + SQ +L F+ N+ +AL + +G L+
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFG----RILSC 175
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGV-----DRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 176 KVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKF---- 231
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V+V L D + E+ K +G +T + L + K + FGFV
Sbjct: 232 ------EEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFV 284
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H++A+ K +N+ E+
Sbjct: 285 NFENHESALNAVKEMNDKEI 304
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V L +V ++F G VT V L + Q K++GF F+ F E A AV E+
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETD-QEGKSRGFGFVNFENHESALNAVKEM 299
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ I+G++ V +Q LF+ N+ + E L+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLE 359
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E+ K +G + +V+D+ G ++GF F+ FSS +A A + +R +
Sbjct: 360 EEFKPFGTITSARV-MVDDA---GKSKGFGFVCFSSPEEATKAITEMNQRMI 407
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + + L + F G +T R+M++ K+KGF F+ F++ E+A +A+TE+
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEM 402
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+I GK V +Q D
Sbjct: 403 NQRMIQGKPLYVALAQRKDV 422
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 52 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 111
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 112 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 170 AQDE--FGNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 221
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V+V + ++ REL YG+IT ++R+ S K + FGFV +
Sbjct: 222 KFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRD-DSGKSRGFGFVNYVD 280
Query: 425 HDAAVTCAKSINNAEL 440
H A + +N+ +
Sbjct: 281 HQNAQSAVDELNDKDF 296
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D+ L + FS G V +R+ + T+++ G+A++ F+ A +A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL YG+ +++ + P+ K + FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMD-PTGKSRGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N EL G K + +A L R + K + SR
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISR 290
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 115/269 (42%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVSFA 359
+ L++ + G +RGF F+ + DA A + L + V G R K +
Sbjct: 216 -KTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVG--RAQKKNER 272
Query: 360 DSFIDPGDEIMAQVKT-------VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
+ + E++ Q + +++ L + D++++R+ +G IT ++ +
Sbjct: 273 QAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 193 KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
K KEF V++ D+ + L+++F + G+ V++MM+P T K++GF F+ + E A
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDA 244
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
+AV ++ +NGK V +Q + L++ N+ T
Sbjct: 245 NKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDT 304
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E L+++ +G + L EG ++GF F+ FSS +A A + R V
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVML-----EEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N E D+ E+ G+ +++ E E + EM+ Q
Sbjct: 239 EKHEDANKAVE---DMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLK----------Q 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 118/254 (46%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ F + +A+ L
Sbjct: 41 LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALESL 100
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ S +F+ N+ + +AL + +G N+ +
Sbjct: 101 NYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFG--NILSCKI 158
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
D + G ++G+ F+ + + A +A K L + V G P K A
Sbjct: 159 ALDES--GNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKI---- 212
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
++I A+ V+V L S ++++ +E+ +G IT L + K K FGF+ F+ +
Sbjct: 213 -EQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITS-ALVQTDEEGKSKGFGFINFENY 270
Query: 426 DAAVTCAKSINNAE 439
+ A ++N E
Sbjct: 271 EDAHKAVDTLNETE 284
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 32/194 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E+ + K V+V LD+ + + +++FS+ G +T L+ + K+KGF F+ F E
Sbjct: 213 EQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITSA-LVQTDEEGKSKGFGFINFENYE 271
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV L NGK V +Q L++ N+
Sbjct: 272 DAHKAVDTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLD 331
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
E L+++ YGV + E +G ++GF F+ FSS +A A + R
Sbjct: 332 DDIDDEKLRQEFSVYGVITSAKVMCDE----KGTSKGFGFVCFSSPDEATKAVTEMNGR- 386
Query: 346 VLFGVDRPAKVSFA 359
+ G +P V+ A
Sbjct: 387 -MIG-SKPIYVALA 398
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 156 EHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRK 215
EH V A ++ ER E + + ++ K + +++ LD D+ + LR+
Sbjct: 284 EHNGKTLYVARAQKKTEREE--ELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQ 341
Query: 216 VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
FS G +T ++M + + +KGF F+ F++ ++A +AVTE+ +I K V +Q
Sbjct: 342 EFSVYGVITSAKVMCD-EKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQ 399
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 137/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ + L + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L + V L VFSQVG V VR+ + ++K+ G+A++ + A +A+ L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
INGK + S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG--NILSCKI 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--E 368
D + E +RG+ F++F A A +L G+ K F F+ D
Sbjct: 155 ATDPSGE--SRGYGFVQFEKDESAQSAIDKLN------GMLINDKKVFVGPFVRKQDREN 206
Query: 369 IMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ + +K V+V L + +D ++E+ YG IT + R+ K + FGFV F+ D
Sbjct: 207 VSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRD-SDGKSRCFGFVNFENAD 265
Query: 427 AAVTCAKSIN 436
AA + +N
Sbjct: 266 AAAQAVQELN 275
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 39/297 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L F G + ++ +P + +++G+ F++F E A
Sbjct: 118 RKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESA 176
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSDTL---------FLGNICKTWTKEALKEKLKH 299
+ A+ +L +IN K+ V P QD + + ++ N+ T T + LKE
Sbjct: 177 QSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGK 236
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
YG + ++ DS +G +R F F+ F + A A + L + D V R K
Sbjct: 237 YGT--ITSAVVMRDS--DGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKK 292
Query: 357 S-----FADSFIDPGDEIMAQVKT--VFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
S + F E+ + + +++ L + D++++REL YG IT ++ R+
Sbjct: 293 SEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDS 352
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG-----------DNKAKVRARLSR 455
R GFV F + + A +N +G D KAK++A+ S+
Sbjct: 353 NGVSRGS-GFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQ 408
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L + V L VFSQVG V VR+ + ++K+ G+A++ + A +A+ L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
INGK + S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG--NILSCKI 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--E 368
D + E +RG+ F++F A A +L G+ K F F+ D
Sbjct: 155 ATDPSGE--SRGYGFVQFEKDESAQSAIDKLN------GMLINDKKVFVGPFVRKQDREN 206
Query: 369 IMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ + +K V+V L + +D ++E+ YG IT + R+ K + FGFV F+ D
Sbjct: 207 VSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRD-SDGKSRCFGFVNFENAD 265
Query: 427 AAVTCAKSIN 436
AA + +N
Sbjct: 266 AAAQAVQELN 275
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 39/297 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L F G + ++ +P + +++G+ F++F E A
Sbjct: 118 RKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESA 176
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSDTL---------FLGNICKTWTKEALKEKLKH 299
+ A+ +L +IN K+ V P QD + + ++ N+ T T + LKE
Sbjct: 177 QSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGK 236
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
YG + ++ DS +G +R F F+ F + A A + L + D V R K
Sbjct: 237 YGT--ITSAVVMRDS--DGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKK 292
Query: 357 S-----FADSFIDPGDEIMAQVKT--VFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
S + F E+ + + +++ L + D++++REL YG IT ++ R+
Sbjct: 293 SEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDS 352
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG-----------DNKAKVRARLSR 455
R GFV F + + A +N +G D KAK++A+ S+
Sbjct: 353 NGVSRGS-GFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQ 408
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +F+Q+G+V VR+ + T+++ G+ ++ + +A +A+ EL
Sbjct: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S T +F+ N+ K+ +AL + +G N+ +
Sbjct: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG--NILSCKV 159
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS G +RG+ F++F + A A +L G+ K F F+ +
Sbjct: 160 ATDS--LGQSRGYGFVQFDNEESAKSAIDKLN------GMLLNDKQVFVGPFLRKQERES 211
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
KT V+V L + ED ++++ +G IT + R+ K K FGFV FD D
Sbjct: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPD 270
Query: 427 AAVTCAKSIN 436
A +++N
Sbjct: 271 DAARSVEALN 280
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 119/269 (44%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + +++G+ F++F E A
Sbjct: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESA 181
Query: 252 RQAVTELKNPVINGKQCGVTP---------SQDS---DTLFLGNICKTWTKEALKEKLKH 299
+ A+ +L ++N KQ V P + D + +++ N+ +T T++ LK+
Sbjct: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ------------KRDVL 347
+G+ + ++ D+ +G ++ F F+ F DA + + L K
Sbjct: 242 FGI--ITSTAVMRDA--DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
Query: 348 FGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
+ + K F S + D+ + ++V L S +D+++EL +G IT ++ R
Sbjct: 298 YEREMELKGKFEQSLKETADKF--EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ P+ + GFV F T + A +N
Sbjct: 356 D-PNGISRGSGFVAFSTAEEASKALTEMN 383
Score = 47.0 bits (110), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++V LD + D L+++FS+ G +T ++M +P ++G F+ F+T E+A +A+T
Sbjct: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
Query: 257 ELKNPVINGKQCGVTPSQ 274
E+ ++ K V +Q
Sbjct: 381 EMNGKMVVSKPLYVALAQ 398
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V L + DDL+K+F + G +T +M + K+K F F+ F + A ++V L
Sbjct: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
Query: 259 KNPVINGKQCGVTPSQ------------------------DSDTLFLGNICKTWTKEALK 294
+ K+ V +Q + L++ N+ + + + LK
Sbjct: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E +G + ++ D N G++RG F+ FS+ +A A + + V V +P
Sbjct: 340 ELFSEFG--TITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMV---VSKPL 392
Query: 355 KVSFA 359
V+ A
Sbjct: 393 YVALA 397
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 128/292 (43%), Gaps = 40/292 (13%)
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VG LD DV D L K F G + R+ +P+T+ G+ ++ F A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 261 PVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+INGK + SQ D L F+ N+ K+ AL +G N+ +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVC 139
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFADSF 362
D N ++G+A++ F S + A A RL R V G +R A+V D
Sbjct: 140 DDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR- 195
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
A VFV D+++++E+ YG +++ R+ S K K FGFV +
Sbjct: 196 --------ATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRD-ASGKSKGFGFVRY 246
Query: 423 DTHDAAVTCA-----KSINNAELGEGDNKAKVR--ARLSRPLQRGKGKHASR 467
+TH+AA KSI+ L G + K+ A L R +R K K SR
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSR 298
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V++ LD+ + + LR+ FS G ++ ++M+ + + KGF + F++ E+A +AV E+
Sbjct: 304 VYIKNLDETIDDEKLREEFSSFGSISRAKVMV--EVGQGKGFGVVCFSSFEEATKAVGEM 361
Query: 259 KNPVINGKQCGVTPSQ 274
++ K VT Q
Sbjct: 362 NGRMVGSKPLHVTLGQ 377
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++FVG + + +D+R +F + G V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 103 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 162
Query: 258 LKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGVDNVE 306
L N G + +D LF+G++ K T++ +KE YG VE
Sbjct: 163 LHNQYTLPGGVGPIEVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG--QVE 220
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
D+ L+ D + +RG F+ FS R AM A L + G D+P V FAD
Sbjct: 221 DVYLMRDELKQ--SRGCGFVNFSHRDMAMAAINALNGIYTMKGCDQPLTVRFAD 272
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 8/173 (4%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G++ +T T+E ++ + +G NV ++ L++D G +G F+++++ +A A
Sbjct: 104 LFVGSVPRTATEEDIRPLFEEHG--NVLEVALIKDKRT-GQQQGCCFIKYATSEEAERAI 160
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ L + L G P +V +AD + + A +FV L E V+E+ YG
Sbjct: 161 RALHNQYTLPGGVGPIEVRYADG---ERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG 217
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG-DNKAKVR 450
++ + L R+ R GFV F D A+ ++N +G D VR
Sbjct: 218 QVEDVYLMRDELKQSR-GCGFVNFSHRDMAMAAINALNGIYTMKGCDQPLTVR 269
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
+ER E+++FVG L+K +++++FS G+V +V LM + + K+++G F+ F+
Sbjct: 185 RERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRD-ELKQSRGCGFVNFSHR 243
Query: 249 EQARQAVTELKNPVINGKQC 268
+ A A+ L N + K C
Sbjct: 244 DMAMAAINAL-NGIYTMKGC 262
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 118/257 (45%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ ++ +AL + +G + L+
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
++ G +RGFAF+ +S+ A A K L + V G V + ++S
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKV---- 219
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E+ AQ V++ + + +L+K +G + L+R+ K FGFV ++
Sbjct: 220 ---EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVS-KGFGFVNYE 275
Query: 424 THDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 276 NHESARKAVDELNEKEV 292
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 125/283 (44%), Gaps = 34/283 (12%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
M+ +R RK + +F+ LD+ + L F+ G++ ++ + + K++GFAF
Sbjct: 120 MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAF 178
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTW 288
+ ++T E A A+ + ++N K+ V +++ N+
Sbjct: 179 VHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEV 238
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-- 346
T ++ +K +G +++ + +G+++GF F+ + + A A L +++V
Sbjct: 239 TDAEFEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNG 294
Query: 347 --LFG------VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
L+ +R A++ + +E + ++V L WD+DR+R + +G
Sbjct: 295 KKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFG 354
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
IT ++ R+ S + FGFV + + D A +N +G
Sbjct: 355 TITSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIG 396
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 47 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 106
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 107 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG--NILSCKV 164
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 165 AQDEFAN--SKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 216
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A +++ + +D R + + +GEIT L+ + K + FGFV +
Sbjct: 217 KFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQ-DGKSRGFGFVNYAN 275
Query: 425 HDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 276 HESAEAAVAEMNEKEV 291
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 100/244 (40%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 128 RKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQD-EFANSKGYGFVHYETAEAA 186
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI T + +
Sbjct: 187 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMF 246
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D +G +RGF F+ +++ A A + +++V + V
Sbjct: 247 EAFG--EITSATLSHDQ--DGKSRGFGFVNYANHESAEAAVAEMNEKEV---KTQKLYVG 299
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++R+L YG IT +
Sbjct: 300 RAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAK 359
Query: 405 LARN 408
+ R+
Sbjct: 360 VMRD 363
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ F + +A+ L
Sbjct: 46 LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALESL 105
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ S +F+ N+ + +AL + +G N+ +
Sbjct: 106 NYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFG--NILSCKI 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
D + G ++G+ F+ + + A +A K L + V G P K A
Sbjct: 164 ALDES--GNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKI---- 217
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
++ A+ V+V L S ++ E+L +G IT L + K K FGFV F+ H
Sbjct: 218 -EQFRAKFTNVYVKNLDESVKDEEFNEMLAKFGPITS-ALVQTDDEGKSKGFGFVNFENH 275
Query: 426 DAAVTCAKSINNAE 439
+ A ++N E
Sbjct: 276 EDAQKAVDALNETE 289
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
++ K + +++ LD D+ + LR+ FS G +T ++M + + +KGF F+ F++
Sbjct: 319 LEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCD-EKDTSKGFGFVCFSS 377
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQ 274
++A +AVTE+ +I K V +Q
Sbjct: 378 PDEATKAVTEMNGRMIGSKPIYVALAQ 404
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 29/181 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E+ + K V+V LD+ V ++ ++ ++ G +T L+ K+KGF F+ F E
Sbjct: 218 EQFRAKFTNVYVKNLDESVKDEEFNEMLAKFGPITSA-LVQTDDEGKSKGFGFVNFENHE 276
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A++AV L GK V +Q L++ N+
Sbjct: 277 DAQKAVDALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLD 336
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
E L+++ YGV + E ++GF F+ FSS +A A + R
Sbjct: 337 DDIDDEKLRQEFSVYGVITSAKVMCDEKDT----SKGFGFVCFSSPDEATKAVTEMNGRM 392
Query: 346 V 346
+
Sbjct: 393 I 393
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L +FSQV +V +R+ + + + G+A++ F+ + A A+ L
Sbjct: 35 LYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMELL 94
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S ++ F+ N+ + +AL+E +G +V +
Sbjct: 95 NFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFG--SVLSCKV 152
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
D+N G ++G+ F++F + A A RL G+ K F F+ + I
Sbjct: 153 AVDNN--GQSKGYGFVQFENEEAAQSAINRLN------GMLINDKEVFVGRFVRHQERIE 204
Query: 371 A----QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A + V+V L + ++ +++ NYG IT + ++ S K K FGFV F + D
Sbjct: 205 ATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQ-SGKSKGFGFVNFQSPD 263
Query: 427 AAVTCAKSINNAELGE-----------GDNKAKVRARL 453
+A + +N + G+ +A+++AR
Sbjct: 264 SAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARF 301
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 29/187 (15%)
Query: 184 HHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFL 243
H E + K V+V L + +DL+K FS G +T ++M Q+ K+KGF F+
Sbjct: 199 HQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSA-IVMKDQSGKSKGFGFV 257
Query: 244 RFATVEQARQAVTELKNPVINGKQCGVTPSQ------------------------DSDTL 279
F + + A AV +L N K V +Q + L
Sbjct: 258 NFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANL 317
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
+L N+ E LKE +G ++ ++ D +G+++G F+ FS+ +A A
Sbjct: 318 YLKNLDDKIDDEKLKELFSEFG--SITSCKVMLD--QQGLSKGSGFVAFSTPEEASRALN 373
Query: 340 RLQKRDV 346
+ + +
Sbjct: 374 GMNGKMI 380
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 189 QERRKR----KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER R K +++ LD + + L+++FS+ G +T ++M++ Q +KG F+
Sbjct: 303 QERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLD-QQGLSKGSGFVA 361
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTP 272
F+T E+A +A+ + NGK G P
Sbjct: 362 FSTPEEASRALNGM-----NGKMIGKKP 384
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 121/269 (44%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD----VLF------GVDRPA 354
+ L++ + G ++GF F+ + DA A + + ++ V+F V+R A
Sbjct: 216 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------INGKVIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ VG V +R+ + T+++ G+A++ + +A+ L
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFG--NILSCKV 176
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
D N G +RGFAF+ + + A A K L + V G +R +KV
Sbjct: 177 ATDEN--GNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKV---- 230
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E A+ +F+ L + + + ++ K +GEI L+ K F FV
Sbjct: 231 ------EEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAFV 283
Query: 421 TFDTHDAAVTCAKSINNAEL 440
+ THDAA +N+ E+
Sbjct: 284 NYTTHDAAKKAVDELNDKEI 303
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 45/301 (14%)
Query: 179 AEEHDHHEMFQER-------------RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
A EH ++ + + R RK + +F+ LD + L F+ G +
Sbjct: 114 ALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILS 173
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS--------- 276
++ + + ++GFAF+ + T E A A+ + ++N K+ V
Sbjct: 174 CKVATD-ENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEE 232
Query: 277 -----DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
+F+ N+ +T++ L++ K +G L++ ED G+++GFAF+ +++
Sbjct: 233 QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGED----GLSKGFAFVNYTTH 288
Query: 332 SDAMDAFKRLQKRDV----LFGVDRPAKVSFADSFIDPGDE---IMAQVKT----VFVDG 380
A A L +++ L+ V R K + D + E + + KT ++V
Sbjct: 289 DAAKKAVDELNDKEINGKKLY-VGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKN 347
Query: 381 LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
+ WD+DR+R G IT ++ R+ A R FGFV F D A + +N +
Sbjct: 348 IDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASR-GFGFVCFSQPDEATRAVQEMNGKMI 406
Query: 441 G 441
G
Sbjct: 407 G 407
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 184 HHEMFQERR-----KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH +ER+ +R +F +F+ L+ + DL +F GE+ L + + +
Sbjct: 219 HHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLS 277
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ--------------------DSD 277
KGFAF+ + T + A++AV EL + INGK+ V +Q +S
Sbjct: 278 KGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESK 337
Query: 278 T----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333
T L++ NI W + L+ + G + ++ D ++G +RGF F+ FS +
Sbjct: 338 TAGVNLYVKNIDDEWDDDRLRSEFDFAGT--ITSAKVMRD--DKGASRGFGFVCFSQPDE 393
Query: 334 AMDAFKRLQKRDVLFGVDRPAKVSFA 359
A A + + + + G +P VS A
Sbjct: 394 ATRAVQEMNGK--MIGT-KPLYVSLA 416
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + +KK+ G+A++ + E +A+ EL
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ + +F+ N+ +AL + +G + L+
Sbjct: 114 NYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----KILSC 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 170 KVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKF---- 225
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A ++V + ++ E+ +L +G+IT I L ++ K K FGFV
Sbjct: 226 ------EEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFV 278
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H++AV + +N+ E+
Sbjct: 279 NFEDHESAVKAVEELNDKEI 298
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V +D + + K+FS G++T + L + Q K+KGF F+ F E A +AV EL
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ T E L+
Sbjct: 294 NDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLE 353
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E+ K +G + + E G ++GF F+ F++ +A A + R +
Sbjct: 354 EEFKPFGTITSAKVMVDE----AGKSKGFGFVCFTTPEEATKAITEMNTRMI 401
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V+++D E+ + V+E+ ++E VG ++ +E++ +++
Sbjct: 275 FGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKK---RERLEELKKQY--------- 322
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
EA R E + K + +FV LD + + L + F G +T
Sbjct: 323 ---EAVRLEKL--------------AKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSA 365
Query: 227 RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++M++ + K+KGF F+ F T E+A +A+TE+ +INGK V +Q D
Sbjct: 366 KVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDV 416
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ VG V +R+ + T+++ G+A++ + +A+ L
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFG--NILSCKV 176
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
D N G +RGFAF+ + + A A K L + V G +R +KV
Sbjct: 177 ATDEN--GNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKV---- 230
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E A+ +F+ L + + + ++ K +GEI L+ K F FV
Sbjct: 231 ------EEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAFV 283
Query: 421 TFDTHDAAVTCAKSINNAEL 440
+ THDAA +N+ E+
Sbjct: 284 NYTTHDAAKKAVDELNDKEI 303
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 45/301 (14%)
Query: 179 AEEHDHHEMFQER-------------RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
A EH ++ + + R RK + +F+ LD + L F+ G +
Sbjct: 114 ALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILS 173
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS--------- 276
++ + + ++GFAF+ + T E A A+ + ++N K+ V
Sbjct: 174 CKVATD-ENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEE 232
Query: 277 -----DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
+F+ N+ +T++ L++ K +G L++ ED G+++GFAF+ +++
Sbjct: 233 QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGED----GLSKGFAFVNYTTH 288
Query: 332 SDAMDAFKRLQKRDV----LFGVDRPAKVSFADSFIDPGDE---IMAQVKT----VFVDG 380
A A L +++ L+ V R K + D + E + + KT ++V
Sbjct: 289 DAAKKAVDELNDKEINGKKLY-VGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKN 347
Query: 381 LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
+ WD+DR+R G IT ++ R+ A R FGFV F D A + +N +
Sbjct: 348 IDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASR-GFGFVCFSQPDEATRAVQEMNGKMI 406
Query: 441 G 441
G
Sbjct: 407 G 407
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 184 HHEMFQERR-----KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH +ER+ +R +F +F+ L+ + DL +F GE+ L + + +
Sbjct: 219 HHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLS 277
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ--------------------DSD 277
KGFAF+ + T + A++AV EL + INGK+ V +Q +S
Sbjct: 278 KGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESK 337
Query: 278 T----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333
T L++ NI W + L+ + G + ++ D ++G +RGF F+ FS +
Sbjct: 338 TAGVNLYVKNIDDEWDDDRLRSEFDFAGT--ITSAKVMRD--DKGASRGFGFVCFSQPDE 393
Query: 334 AMDAFKRLQKRDVLFGVDRPAKVSFA 359
A A + + + + G +P VS A
Sbjct: 394 ATRAVQEMNGK--MIGT-KPLYVSLA 416
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 33/259 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++G LD V L ++F+ +G V +R+ + T+++ G+A++ F +E +A+ EL
Sbjct: 71 LYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 130
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ +L F+ N+ +AL + +G + L+
Sbjct: 131 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG----KILSC 186
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGV-----DRPAKVSFAD 360
+ G ++G+ F+ F S A A + L + V G DR +K
Sbjct: 187 KVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKF---- 242
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+ + A V+V L E+ +L + YG+IT + LA++ + K + F FV
Sbjct: 243 ------EALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKD-NAGKFRGFAFV 295
Query: 421 TFDTHDAAVTCAKSINNAE 439
F THD+A +N+ E
Sbjct: 296 NFATHDSAQQAVDELNDFE 314
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 42/208 (20%)
Query: 184 HHEMFQERRKRKEFE--------VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK 235
HH R ++ +FE V+V LD D ++ K+F + G++T + L +
Sbjct: 231 HH--ISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKD-NAG 287
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSD------------------ 277
K +GFAF+ FAT + A+QAV EL + GK+ V +Q
Sbjct: 288 KFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKI 347
Query: 278 ------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
LF+ N+ E LK + +G + ++ D NN+ ++GF F+ +S+
Sbjct: 348 NKYQGVNLFVKNLQDEIDDERLKSEFSAFGT--ITSAKVMTDENNK--SKGFGFVCYSNP 403
Query: 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
+A A + +R +L G +P V+ A
Sbjct: 404 EEATKAIAEMNQR-MLAG--KPLYVALA 428
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 185 HEMFQERRKRKE------------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP 232
HE +E RK+ E +FV L ++ + L+ FS G +T ++M +
Sbjct: 329 HERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTD- 387
Query: 233 QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ K+KGF F+ ++ E+A +A+ E+ ++ GK V +Q
Sbjct: 388 ENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQ 429
>gi|359477208|ref|XP_002279515.2| PREDICTED: flowering time control protein FCA [Vitis vinifera]
Length = 785
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++FVG + + +D+R +F + G V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 119 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 178
Query: 258 LKNP-VINGKQCGVTPSQ----DSD---------TLFLGNICKTWTKEALKEKLKHYGVD 303
L N + G GV P Q D + LF+G++ K T++ +KE YG
Sbjct: 179 LHNQYTLPG---GVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG-- 233
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
VED+ L+ D + +RG F++FS R AM A L + G D+P V FAD
Sbjct: 234 QVEDVYLMRDELKQ--SRGCGFVKFSHRDMAMAAINALNGIYTMRGCDQPLTVRFAD 288
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G++ +T T+E ++ + +G NV ++ L++D G +G F+++++ +A A
Sbjct: 120 LFVGSVPRTATEEDIRPLFEEHG--NVLEVALIKDKRT-GQQQGCCFIKYATSEEAERAI 176
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ L + L G P +V +AD + + A +FV L E V+E+ YG
Sbjct: 177 RALHNQYTLPGGVGPIQVRYAD---GERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG 233
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
++ + L R+ R GFV F D A+ ++N
Sbjct: 234 QVEDVYLMRDELKQSR-GCGFVKFSHRDMAMAAINALN 270
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
ER E+++FVG L+K +++++FS G+V +V LM + + K+++G F++F+ +
Sbjct: 202 ERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRD-ELKQSRGCGFVKFSHRD 260
Query: 250 QARQAVTELKNPVINGKQC 268
A A+ L N + + C
Sbjct: 261 MAMAAINAL-NGIYTMRGC 278
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L FSQ+G+V VR+ + T+++ G+ ++ F + + A +A+ EL
Sbjct: 42 LYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQEL 101
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK V S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 102 NYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFG--NIISCKV 159
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G ++G+ F+++ + A A +L G+ K + F+ +
Sbjct: 160 AVDSS--GQSKGYGFVQYETEESAQKAMGQLN------GMLLNDKQVYVGPFLRRQERDS 211
Query: 371 AQVKTVF----VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
KT+F V L S +D ++ + +G+IT + ++ K K FGFV F+ D
Sbjct: 212 TGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKD-GEGKPKGFGFVNFENAD 270
Query: 427 AAVTCAKSIN 436
A +S+N
Sbjct: 271 DAAKAVESLN 280
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 43/292 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + ++ ++ + ++KG+ F+++ T E A++A+ +L
Sbjct: 130 IFIKNLDKSIDHKALHDTFSVFGNIISCKVAVD-SSGQSKGYGFVQYETEESAQKAMGQL 188
Query: 259 KNPVINGKQCGVTP--------SQDSDTLF----LGNICKTWTKEALKEKLKHYGVDNVE 306
++N KQ V P S + T+F + N+ ++ T + LK +G +
Sbjct: 189 NGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFG--KIT 246
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRP---------A 354
+++D EG +GF F+ F + DA A + L + D + V R
Sbjct: 247 SAVVMKDG--EGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMEL 304
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
KV + S + D+ Q ++V L S +++++EL YG +T ++ R+ P+
Sbjct: 305 KVQYEQSLKEAADKF--QSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRD-PNGMS 361
Query: 415 KDFGFVTFDTHDAAV-----TCAKSINNAELGEG------DNKAKVRARLSR 455
+ GFV F T + A K I N L D +A+++A+ S+
Sbjct: 362 RGSGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRARLQAQFSQ 413
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 158 GQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRK--------------------EF 197
G G ENA + A+ E ++ + D E F R ++K +F
Sbjct: 260 GFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKF 319
Query: 198 E---VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQA 254
+ ++V LD V + L+++F+ G VT ++M +P ++G F+ F+T E+A +A
Sbjct: 320 QSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDP-NGMSRGSGFVAFSTPEEATKA 378
Query: 255 VTELKNPVINGKQCGVTPSQ 274
++E+ +I K V +Q
Sbjct: 379 MSEMSGKMIENKPLYVAVAQ 398
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L VFSQVG V VR+ + T+ + G+A++ F++ A +A+ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI--DPGDE 368
+ + E ++G+ F+++ A +A L G+ K + F+ +
Sbjct: 162 ATEMSGE--SKGYGFVQYEQDESAQNAINELN------GMLLNDKKVYVGPFVRKQEREN 213
Query: 369 IMA--QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ + V+V L S ED ++EL N+G IT + + R K + FGFV F+ D
Sbjct: 214 VFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVR-ADDGKSRCFGFVNFENPD 272
Query: 427 AAVTCAKSIN 436
AV + +N
Sbjct: 273 DAVHAVEDLN 282
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 29/273 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + ++KG+ F+++ E A
Sbjct: 125 RKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKV-ATEMSGESKGYGFVQYEQDESA 183
Query: 252 RQAVTELKNPVINGKQCGVTP------------SQDSDTLFLGNICKTWTKEALKEKLKH 299
+ A+ EL ++N K+ V P S + +++ N+ ++ T++ LKE +
Sbjct: 184 QNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGN 243
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+G + + +V ++G +R F F+ F + DA+ A + L + D V R K
Sbjct: 244 FG--PITSVIVVRA--DDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKK 299
Query: 357 S-----FADSFIDPGDEIM--AQVKTVFVDGLPASWDED-RVRELLKNYGEITKIELARN 408
S +SF E Q +++ L S D+D +++EL +G IT ++ R+
Sbjct: 300 SEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRD 359
Query: 409 MPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K GFV F + + A ++N +G
Sbjct: 360 -SNGVNKGSGFVAFKSSEDATRALVAMNGKMVG 391
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L VFSQVG V VR+ + T+ + G+A++ F++ A +A+ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI--DPGDE 368
+ + E ++G+ F+++ A +A L G+ K + F+ +
Sbjct: 162 ATEMSGE--SKGYGFVQYEQDESAQNAINELN------GMLLNDKKVYVGPFVRKQEREN 213
Query: 369 IMA--QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ + V+V L S ED ++EL N+G IT + + R K + FGFV F+ D
Sbjct: 214 VFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVR-ADDGKSRCFGFVNFENPD 272
Query: 427 AAVTCAKSIN 436
AV + +N
Sbjct: 273 DAVHAVEDLN 282
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 29/273 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + ++KG+ F+++ E A
Sbjct: 125 RKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKV-ATEMSGESKGYGFVQYEQDESA 183
Query: 252 RQAVTELKNPVINGKQCGVTP------------SQDSDTLFLGNICKTWTKEALKEKLKH 299
+ A+ EL ++N K+ V P S + +++ N+ ++ T++ LKE +
Sbjct: 184 QNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGN 243
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+G + + +V ++G +R F F+ F + DA+ A + L + D V R K
Sbjct: 244 FG--PITSVIVVRA--DDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKK 299
Query: 357 S-----FADSFIDPGDEIM--AQVKTVFVDGLPASWDED-RVRELLKNYGEITKIELARN 408
S +SF E Q +++ L S D+D +++EL +G IT ++ R+
Sbjct: 300 SEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRD 359
Query: 409 MPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K GFV F + + A ++N +G
Sbjct: 360 -SNGVNKGSGFVAFKSSEDATRALVAMNGKMVG 391
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 121/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFG--NVLSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG-----VDRPAKVSFAD 360
D + G ++G+ F+ + + A A K L + V G +R +K+
Sbjct: 168 ATDEH--GRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKI---- 221
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ AQ V+V + A ++ R+L + +G +T + R+ + K FGFV
Sbjct: 222 ------EEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRD-EEGRSKGFGFV 274
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H+ A +S+++ EL
Sbjct: 275 NFEKHEEAQKGVESLHDFEL 294
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 32/275 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G V ++ + + ++KG+ F+ + T E A
Sbjct: 131 RKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAA 189
Query: 252 RQAVTELKNPVINGKQCGVTP--------------SQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V P +++ NI T E ++
Sbjct: 190 DTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLF 249
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+ +G NV + D EG ++GF F+ F +A + L ++ LF V R
Sbjct: 250 EQFG--NVTSAVIQRDE--EGRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKLF-VTRA 304
Query: 354 AKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELA 406
K + S+ +E +++ + V ++ L D++R+R+ + +G IT ++
Sbjct: 305 QKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVM 364
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
R+ K FGFV F + D A +NN +G
Sbjct: 365 RD-EKGSSKGFGFVCFSSPDEATKAVAEMNNKMIG 398
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++ L+ +V + LR+ F G +T ++M + + +KGF F+ F++ ++A +AV E+
Sbjct: 334 LYIKNLEDEVDDERLRQEFEPFGTITSAKVMRD-EKGSSKGFGFVCFSSPDEATKAVAEM 392
Query: 259 KNPVINGKQCGVTPSQ 274
N +I K V+ +Q
Sbjct: 393 NNKMIGTKPLYVSLAQ 408
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 24/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+ G+ + SQ +L F+ N+ K+ +A+ + +G ++ +
Sbjct: 73 NFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG--HILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
V D N G+N+G+ F+ F ++ A A ++ L + V G P K + +
Sbjct: 131 VTDEN--GVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRK----ERLMQM 184
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
GD Q VF+ L D+ ++ E YG I ++ + +K K FGF++F+ H
Sbjct: 185 GDH-QKQFTNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFD--DSKSKGFGFISFEDH 241
Query: 426 DAAVTCAKSINNAEL 440
+AA K+IN +E+
Sbjct: 242 EAANDFVKTINGSEV 256
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 29/261 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + + FS G + +++ + + NKG+ F+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKAMYDTFSAFGHILSCKVVTD-ENGVNKGYGFVHFETQEAANKAIEKV 159
Query: 259 KNPVINGKQC--GVTPSQDSDTLFLGNICKTWTKEALKE--------KLKHYGVDNVEDL 308
++NGK+ G + + +G+ K +T +K KL +G L
Sbjct: 160 NGMLLNGKKVYVGYFIPRKERLMQMGDHQKQFTNVFIKNLAEDVDDGKLAEFGGQYGSIL 219
Query: 309 T---LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFG------VDRPAK 355
+ + +DS + +GF F+ F A D K + +V L+ +R A+
Sbjct: 220 SAKIMFDDSKS----KGFGFISFEDHEAANDFVKTINGSEVNGRTLYAGRAQKKAERAAE 275
Query: 356 VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRK 415
+ + Q +++ L D++R+R+ YG IT ++ + A K
Sbjct: 276 LKARFEALKQERSTRYQGVNLYIKNLDDEIDDERLRKEFSRYGTITSAKVMSD-DKANSK 334
Query: 416 DFGFVTFDTHDAAVTCAKSIN 436
FGFV F + + A +N
Sbjct: 335 GFGFVCFSSPEEATKAVTEMN 355
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 75 QKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDD 134
Q D K+ + + K+ D+DD + +YG + + +D + G +D
Sbjct: 183 QMGDHQKQFTNVFIKNLAEDVDDGKLAEFGGQYGSIL--SAKIMFDDSKSKGFGFISFED 240
Query: 135 ENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKR 194
+ + E+ G+ +++ E A E R E + QER R
Sbjct: 241 HEAANDFVKTINGSEVNGRTLYAGRAQKKAERAAELKARFEALK----------QERSTR 290
Query: 195 KE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQ 253
+ +++ LD ++ + LRK FS+ G +T ++M + + +KGF F+ F++ E+A +
Sbjct: 291 YQGVNLYIKNLDDEIDDERLRKEFSRYGTITSAKVMSDDKAN-SKGFGFVCFSSPEEATK 349
Query: 254 AVTELKNPVINGKQCGVTPSQDSD 277
AVTE+ ++ K V +Q D
Sbjct: 350 AVTEMNGRILVAKPLYVALAQRKD 373
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 147
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 148 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 201
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ ++EL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 202 AKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHED 260
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 261 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISR 307
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 175
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + LKE +G
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG--- 232
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ ++ G ++GF F+ + DA A K + + + G V+R A
Sbjct: 233 -KTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 291
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R +G IT ++ +
Sbjct: 292 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDG 347
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 348 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 376
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 256 EKHEDANKAVEEMNG---KEMSGKAIFVGRAQKKVERQAELKRKFE----------QLKQ 302
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LR+ FS G +T ++M+ + ++KGF F+ F++
Sbjct: 303 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 360
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 361 EEATKAVTEMNGRIVGSKPLYVALAQ 386
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 118/257 (45%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ L
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ ++ +AL + +G + L+
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 165
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
++ G +RGFAF+ +S+ A A K L + V G V + ++S
Sbjct: 166 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKV---- 221
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E+ AQ V++ + + +L+K +G + L+R+ K FGFV ++
Sbjct: 222 ---EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVS-KGFGFVNYE 277
Query: 424 THDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 278 HHESARKAVDELNEKEV 294
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 131/310 (42%), Gaps = 30/310 (9%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G++ ++ + + K++GFAF+ ++T E A
Sbjct: 131 RKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAA 189
Query: 252 RQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V +++ N+ T ++ +
Sbjct: 190 DAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLV 249
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFG---- 349
K +G +++ + +G+++GF F+ + A A L +++V L+
Sbjct: 250 KPFG----PTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLYAGRAQ 305
Query: 350 --VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
+R A++ + +E + +++ L WD+DR+R + +G IT ++ R
Sbjct: 306 TKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMR 365
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ S + FGFV + + D A +N +G + R Q + + A R
Sbjct: 366 D-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQR 424
Query: 468 GDFRSGRGTG 477
R GTG
Sbjct: 425 AQQRMQYGTG 434
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L K FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 12 LYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ ++ + L E +G + L+
Sbjct: 72 NFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFG----KILSS 127
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 128 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKDCKV-FVGRFKNRKDREA 180
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ V++ D++R+RE+ YG+ +++ + PS K K FGFV+FD
Sbjct: 181 ELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTD-PSGKSKGFGFVSFDN 239
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 240 HEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQK 283
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 116/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LD+ + L + FS G++ ++M + Q +KG+AF+ F A +A+ E+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 259 KNPVINGKQCGV----------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGV 302
++ K C V + + +++ N E L+E YG
Sbjct: 158 NGKLL--KDCKVFVGRFKNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYG- 214
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK---- 355
+ L++ ++ G ++GF F+ F + A A + + +D+ L V R K
Sbjct: 215 ---KTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVER 271
Query: 356 -VSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
F E + + + V ++ L + D++++R+ ++G I+++++ +
Sbjct: 272 QAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQ--EEG 329
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FG + F + + A +N LG
Sbjct: 330 QSKGFGLICFSSPEEATKAMTEMNGQILG 358
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 99 EPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHG 158
+P + + +G V +D+ E + V+E+ ++ G++ V G
Sbjct: 224 DPSGKSKGFGFVSFDNHEAAQKAVEEMNGKD----------------INGQLIFV----G 263
Query: 159 QGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFS 218
+ +++VE +AE +M + ++ + RK + ++++ LD + + LRK FS
Sbjct: 264 RAQKKVE---RQAELKQMFEQQKRERI------RKCQGVKLYIKNLDDTIDDEKLRKEFS 314
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
G ++ V++M + ++KGF + F++ E+A +A+TE+ ++ K + SQ
Sbjct: 315 SFGSISRVKVM--QEEGQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALSQ 368
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D+ L + FS G V +R+ + T+++ G+A++ F+ A +A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ ++++++E+ + YG+ +++ + S K + FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRGFGFVSFEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + IN EL G K + +A L R + K + SR
Sbjct: 244 ANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISR 290
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE + YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG-----VDRPA 354
+ L++ +++ G +RGF F+ F DA A + L + V G ++R A
Sbjct: 216 -KTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q +++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + E+ G+ ++++E E + E++ Q
Sbjct: 239 EKHEDANKAVEEING---TELNGKTVFVGRAQKKMERQAELKRKFELLK----------Q 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKCRREREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++E YG+ +++ + PS K K FGFV+F+ H+
Sbjct: 185 AKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTD-PSGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAE-------LGEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N + +G K + +A L R ++ K + SR
Sbjct: 244 ANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISR 290
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ ++ G ++GF F+ F DA A + +DV + V R K
Sbjct: 216 -KTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 193 KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
K KEF V++ +D+ + L++ FS+ G+ V++M +P + K+KGF F+ F E A
Sbjct: 186 KAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDA 244
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
+AV ++ +NGK V +Q L++ N+ T
Sbjct: 245 NKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E L+++ +G +T + EG ++GF F+ FSS +A A + R V
Sbjct: 305 IDDEKLRKEFSPFG-----SITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
+ H+D N + DD+ ++ G+ +++VE E R E ++ Q
Sbjct: 239 ERHEDAN---KAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFE----------QLKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 36/257 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS G V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 289 LYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDTM 348
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ L F+ N+ K+ + L E +G L+
Sbjct: 349 NFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----RILSS 404
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPAKV-SFA 359
S+++G ++G+AF+ F ++S A A K LQ V G DR A++ S A
Sbjct: 405 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKA 463
Query: 360 DSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGF 419
F + V++ D++R++++ YG+ +++ + S K K FGF
Sbjct: 464 SEFTN-----------VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGF 511
Query: 420 VTFDTHDAAVTCAKSIN 436
V+FD+H+AA + +N
Sbjct: 512 VSFDSHEAAKKAVEEMN 528
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 34/194 (17%)
Query: 191 RRKRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
R K EF V++ D+ + L+ VFS+ G+ V++M + + K+KGF F+ F + E
Sbjct: 460 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHE 518
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDS------------------------DTLFLGNIC 285
A++AV E+ ING+ V +Q L++ N+
Sbjct: 519 AAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLD 578
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
T E L+++ +G ++ V+ EG ++GF + FSS DA+ A + R
Sbjct: 579 DTIDDEKLRKEFSSFG-----SISRVKVMQEEGQSKGFGLICFSSPEDALKAMTEMNGR- 632
Query: 346 VLFGVDRPAKVSFA 359
+ G +P ++ A
Sbjct: 633 -ILG-SKPLSIALA 644
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 164 VENAGEEAERPEMVDAEEHDHHEMFQERRKR--KEFEVFVGGLDKDVVGDDLRKVFSQVG 221
V A ++ ER AE E + R R + +++V LD + + LRK FS G
Sbjct: 539 VARAQKKVER----QAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFG 594
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++ V++M + ++KGF + F++ E A +A+TE+ ++ K + +Q
Sbjct: 595 SISRVKVM--QEEGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQ 645
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 54 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQL 113
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G NV +
Sbjct: 114 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFG--NVLSCKV 171
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG-----VDRPAKVSFAD 360
D G ++G+ F+ + + A A K L + V G DR AK+
Sbjct: 172 ATDE--MGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKL---- 225
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE Q V+V + ++D REL +G +T L R+ + + FGFV
Sbjct: 226 ------DEQKKQFTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRD-EEGRSRGFGFV 278
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+TH+ A ++++++
Sbjct: 279 NFETHEEAQKAVDTLHDSDF 298
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 32/275 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD + L F+ G V ++ + + ++KG+ F+ + T E A
Sbjct: 135 RKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCKVATD-EMGRSKGYGFVHYETNEAA 193
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI + +E
Sbjct: 194 ESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKKQFTNVYVKNIDPEANDDEFRELF 253
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+G NV L D EG +RGF F+ F + +A A L D LF V R
Sbjct: 254 TPFG--NVTSAVLQRDE--EGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLF-VSRA 308
Query: 354 AKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELA 406
K S S+ E M++ + V ++ L D++++R+ + +G IT ++
Sbjct: 309 QKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVM 368
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
R K FGFV F + D A +NN +G
Sbjct: 369 RT-EGGTSKGFGFVCFSSPDEATKAVAEMNNKMMG 402
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
++ K + +++ L+ DV + LR F G +T ++M + +KGF F+ F++
Sbjct: 327 MEKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVM-RTEGGTSKGFGFVCFSS 385
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQ 274
++A +AV E+ N ++ K V+ +Q
Sbjct: 386 PDEATKAVAEMNNKMMGSKPLYVSLAQ 412
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + TK + G+A++ F E R+A+ +L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G ++ +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKI 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D N G ++GF F+ F A +A D L G+ + + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAAKEAI------DALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+E A ++V + + +++ +EL +G I L ++ K K FGFV ++
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEK 268
Query: 425 HDAAVTCAKSINNAEL 440
H+ AV +++N++EL
Sbjct: 269 HEDAVKAVEALNDSEL 284
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 30/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G++ ++ + + K+KGF F+ F A
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 179
Query: 252 RQAVTELKNPVINGKQCGVTP--------SQDSDT------LFLGNICKTWTKEALKEKL 297
++A+ L ++NG++ V P SQ +T L++ NI T E +E
Sbjct: 180 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 239
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPA 354
+G + +L +D+ +G +GF F+ + DA+ A + L ++ V R
Sbjct: 240 AKFGP--IVSASLEKDA--DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 355 KVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + + E MA+ + V FV L S D++++ E YG IT ++ R
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ K K FGFV F T + A N
Sbjct: 356 T-ENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD V + L + F+ G +T ++M + K+KGF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 383 NQQIVAGKPLYVAIAQRKDV 402
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V ++ + + +++F++ G + L + K KGF F+ + E A +AV L
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ +NG++ V +Q + LF+ N+ + E L+
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ YG + E+ G ++GF F+ FS+ +A A ++ V +P
Sbjct: 340 EEFAPYGTITSAKVMRTEN----GKSKGFGFVCFSTPEEATKAITEKNQQIV---AGKPL 392
Query: 355 KVSFA 359
V+ A
Sbjct: 393 YVAIA 397
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + TK + G+A++ F E R+A+ +L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G ++ +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKI 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D N G ++GF F+ F A +A D L G+ + + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAAKEAI------DALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+E A ++V + + +++ +EL +G I L ++ K K FGFV ++
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEK 268
Query: 425 HDAAVTCAKSINNAEL 440
H+ AV +++N++EL
Sbjct: 269 HEDAVKAVEALNDSEL 284
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 30/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G++ ++ + + K+KGF F+ F A
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 179
Query: 252 RQAVTELKNPVINGKQCGVTP--------SQDSDT------LFLGNICKTWTKEALKEKL 297
++A+ L ++NG++ V P SQ +T L++ NI T E +E
Sbjct: 180 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 239
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPA 354
+G + +L +D+ +G +GF F+ + DA+ A + L ++ V R
Sbjct: 240 AKFGP--IVSASLEKDA--DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 355 KVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + + E MA+ + V FV L S D++++ E YG IT ++ R
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ K K FGFV F T + A N
Sbjct: 356 T-ENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD V + L + F+ G +T ++M + K+KGF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 383 NQQIVAGKPLYVAIAQRKDV 402
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V ++ + + +++F++ G + L + K KGF F+ + E A +AV L
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ +NG++ V +Q + LF+ N+ + E L+
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ YG + E+ G ++GF F+ FS+ +A A ++ V +P
Sbjct: 340 EEFAPYGTITSAKVMRTEN----GKSKGFGFVCFSTPEEATKAITEKNQQIV---AGKPL 392
Query: 355 KVSFA 359
V+ A
Sbjct: 393 YVAIA 397
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 125/278 (44%), Gaps = 34/278 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L +FSQV +V +R+ + + + G+A++ F+ + A A+ L
Sbjct: 25 LYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELL 84
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S ++ F+ N+ + +AL+E +G L+
Sbjct: 85 NFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFG----PVLSC 140
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+N G ++G+ F++F + A A RL G+ K F F+ + I
Sbjct: 141 KVAVDNNGQSKGYGFVQFENEEAAQSAINRLN------GMLINDKEVFVGRFVRHQERIE 194
Query: 371 A----QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A + V+V L + ++ +++ NYG IT + ++ S K K FGFV F + D
Sbjct: 195 ATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQ-SGKSKGFGFVNFQSPD 253
Query: 427 AAVTCAKSINNAELGE-----------GDNKAKVRARL 453
+A + +N + G+ +A+++AR
Sbjct: 254 SAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARF 291
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 29/187 (15%)
Query: 184 HHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFL 243
H E + K V+V L + +DL+K FS G +T ++M Q+ K+KGF F+
Sbjct: 189 HQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSA-IVMKDQSGKSKGFGFV 247
Query: 244 RFATVEQARQAVTELKNPVINGKQCGVTPSQ------------------------DSDTL 279
F + + A AV +L N K V +Q + L
Sbjct: 248 NFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANL 307
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
+L N+ E LKE +G ++ ++ D +G+++G F+ FS+ +A A
Sbjct: 308 YLKNLDDKIDDEKLKELFSEFG--SITSCKVMLD--QQGLSKGSGFVAFSTPEEASRALN 363
Query: 340 RLQKRDV 346
+ + +
Sbjct: 364 GMNGKMI 370
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 189 QERRKR----KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER R K +++ LD + + L+++FS+ G +T ++M++ Q +KG F+
Sbjct: 293 QERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLD-QQGLSKGSGFVA 351
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTP 272
F+T E+A +A+ + NGK G P
Sbjct: 352 FSTPEEASRALNGM-----NGKMIGKKP 374
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 121/256 (47%), Gaps = 23/256 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FSQVG+V +R+ + T+++ G+A++ + + A +A+ L
Sbjct: 26 LYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALELL 85
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + S + +F+ N+ K+ +AL + +G L+
Sbjct: 86 NFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGT----ILSC 141
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDE-- 368
++ G ++G+ F++F A A +++ G+ K F F+ +
Sbjct: 142 KVATDPSGQSKGYGFVQFEQEESAQTAIEKVN------GMLLNDKQVFVGPFVRRQERDQ 195
Query: 369 --IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
++++ V+V L S +D ++++ + YG I+ + R+ K K FGFV F+ D
Sbjct: 196 SGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDN-EGKSKCFGFVNFEHAD 254
Query: 427 AAVTCAKSINNAELGE 442
A +++N + E
Sbjct: 255 DAAKAVEALNGKKFDE 270
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 125/281 (44%), Gaps = 32/281 (11%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
MF R RK +F+ LDK + L F+ G + ++ +P + ++KG+ F
Sbjct: 98 MFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDP-SGQSKGYGF 156
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPS---QDSD---------TLFLGNICKTWTK 290
++F E A+ A+ ++ ++N KQ V P Q+ D +++ N+ + T
Sbjct: 157 VQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTD 216
Query: 291 EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---L 347
+ LK+ + YG + ++ D NEG ++ F F+ F DA A + L +
Sbjct: 217 DELKKVFEAYG--PISSAVVMRD--NEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKE 272
Query: 348 FGVDRPAKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEI 400
+ V R K S F E + + + V ++ L + D++++RE+ YG I
Sbjct: 273 WYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTI 332
Query: 401 TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
++ R+ P + + GFV F + D A +N +G
Sbjct: 333 VSCKVMRD-PQGQSRGSGFVAFSSPDEATRAVTEMNGKMVG 372
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 189 QERRKRKE----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER++R E +++ LD + + LR++FS+ G + ++M +PQ +++G F+
Sbjct: 294 QERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQ-GQSRGSGFVA 352
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTP 272
F++ ++A +AVTE+ NGK G P
Sbjct: 353 FSSPDEATRAVTEM-----NGKMVGSKP 375
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D+ L + FS G V +R+ + T+++ G+A++ F+ A +A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ DA D + ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ +++R++EL YG+ +++ + P+ K + FGF++++ H+
Sbjct: 185 AKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTD-PTGKSRGFGFISYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N EL G K + +A L R + K + SR
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISR 290
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 114/267 (42%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T + A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E LKE YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG-----VDRPA 354
+ L++ ++ G +RGF F+ + DA A + L + V G ++R A
Sbjct: 216 -KTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q +++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 193 KRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
K KEF V++ D+ + L+++F + G+ V++M +P T K++GF F+ + E A
Sbjct: 186 KAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDP-TGKSRGFGFISYEKHEDA 244
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
+AV ++ +NGK V +Q L++ N+ T
Sbjct: 245 NKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDT 304
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E L+++ +G +T + EG ++GF F+ FSS +A A + R V
Sbjct: 305 IDDEKLRKEFSPFG-----SITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N E D+ E+ G+ ++++E E + EM+ Q
Sbjct: 239 EKHEDANKAVE---DMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLK----------Q 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 118/250 (47%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L +F+QVG+V VR+ + T+++ G+ ++ F + A +A+ L
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+N K V S + +F+ N+ KT +AL + +G + ++
Sbjct: 94 NFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFG----QIMSC 149
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG--DE 368
++ G ++G+ F++F + A +A +L G+ K F F+ D
Sbjct: 150 KIATDGSGQSKGYGFVQFEAEDSAQNAIDKLN------GMLINDKQVFVGHFLRKQDRDN 203
Query: 369 IMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
++++ K V+V L S+ ED ++ YG IT L R+ + K FGFV F+ +
Sbjct: 204 VLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAE 262
Query: 427 AAVTCAKSIN 436
A +++N
Sbjct: 263 DAAKAVEALN 272
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 59/298 (19%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G++ ++ + + ++KG+ F++F + A
Sbjct: 115 RKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSA 173
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSD---------TLFLGNICKTWTKEALKEKLKH 299
+ A+ +L +IN KQ V QD D +++ N+ +++T++ LK +
Sbjct: 174 QNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGA 233
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV------------- 346
YG + L+ D+ +G ++ F F+ F + DA A + L + V
Sbjct: 234 YG--TITSAVLMRDA--DGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKK 289
Query: 347 ------LFG-VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGE 399
L G ++ K S D F Q +++ L S +++++E+ +G
Sbjct: 290 SEREQELKGRFEQTVKESVVDKF---------QGLNLYLKNLDDSITDEKLKEMFSEFGT 340
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457
IT ++ R+ P+ + GFV F T + A + LGE + K V S+PL
Sbjct: 341 ITSYKIMRD-PNGVSRGSGFVAFSTPEEA--------SRALGEMNGKMIV----SKPL 385
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 38/231 (16%)
Query: 159 QGEEEVENAGEEAERPEMVDAEEHDHHEMFQERR-----KRKEFEVFVGGLDKDVVGDDL 213
+ E+ +NA ++ + D + H + ++ R K K V+V L + DDL
Sbjct: 168 EAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDL 227
Query: 214 RKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273
+ F G +T LM + ++K F F+ F E A +AV L ++ K+ V +
Sbjct: 228 KNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKA 286
Query: 274 QDSD-------------------------TLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
Q L+L N+ + T E LKE +G +
Sbjct: 287 QKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFG--TITSY 344
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
++ D N G++RG F+ FS+ +A A + + + V +P V+ A
Sbjct: 345 KIMRDPN--GVSRGSGFVAFSTPEEASRALGEMNGKMI---VSKPLYVAVA 390
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + TK + G+A++ F E R+A+ +L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G ++ +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKI 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D N G ++GF F+ F A +A D L G+ + + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAAKEAI------DALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+E A ++V + + +++ +EL +G I L ++ K K FGFV ++
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEK 268
Query: 425 HDAAVTCAKSINNAEL 440
H+ AV +++N++EL
Sbjct: 269 HEDAVKAVEALNDSEL 284
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 30/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G++ ++ + + K+KGF F+ F A
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 179
Query: 252 RQAVTELKNPVINGKQCGVTP--------SQDSDT------LFLGNICKTWTKEALKEKL 297
++A+ L ++NG++ V P SQ +T L++ NI T E +E
Sbjct: 180 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 239
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPA 354
+G + +L +D+ +G +GF F+ + DA+ A + L ++ V R
Sbjct: 240 AKFGP--IVSASLEKDA--DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 355 KVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + + E MA+ + V FV L S D++++ E YG IT ++ R
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ K K FGFV F T + A N
Sbjct: 356 T-ENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD V + L + F+ G +T ++M + K+KGF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 383 NQQIVAGKPLYVAIAQRKDV 402
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V ++ + + +++F++ G + L + K KGF F+ + E A +AV L
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ +NG++ V +Q + LF+ N+ + E L+
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ YG + E+ G ++GF F+ FS+ +A A ++ V +P
Sbjct: 340 EEFAPYGTITSAKVMRTEN----GKSKGFGFVCFSTPEEATKAITEKNQQIV---AGKPL 392
Query: 355 KVSFA 359
V+ A
Sbjct: 393 YVAIA 397
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + TK + G+A++ F E R+A+ +L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G ++ +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKI 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D N G ++GF F+ F A +A D L G+ + + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAAKEAI------DALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+E A ++V + + +++ +EL +G I L ++ K K FGFV ++
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEK 268
Query: 425 HDAAVTCAKSINNAEL 440
H+ AV +++N++EL
Sbjct: 269 HEDAVKAVEALNDSEL 284
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 30/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G++ ++ + + K+KGF F+ F A
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 179
Query: 252 RQAVTELKNPVINGKQCGVTP--------SQDSDT------LFLGNICKTWTKEALKEKL 297
++A+ L ++NG++ V P SQ +T L++ NI T E +E
Sbjct: 180 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 239
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPA 354
+G + +L +D+ +G +GF F+ + DA+ A + L ++ V R
Sbjct: 240 AKFGP--IVSASLEKDA--DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 355 KVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + + E MA+ + V FV L S D++++ E YG IT ++ R
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ K K FGFV F T + A N
Sbjct: 356 T-ENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD V + L + F+ G +T ++M + K+KGF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 383 NQQIVAGKPLYVAIAQRKDV 402
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V ++ + + +++F++ G + L + K KGF F+ + E A +AV L
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ +NG++ V +Q + LF+ N+ + E L+
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ YG + E+ G ++GF F+ FS+ +A A ++ V +P
Sbjct: 340 EEFAPYGTITSAKVMRTEN----GKSKGFGFVCFSTPEEATKAITEKNQQIV---AGKPL 392
Query: 355 KVSFA 359
V+ A
Sbjct: 393 YVAIA 397
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 119/254 (46%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L VF+QV V +R+ + +K++ G+A++ + T + A +A+ L
Sbjct: 39 LYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEML 98
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
++NGK + S +F+ N+ K+ +AL + +G N+ +
Sbjct: 99 NFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFG--NILSCKV 156
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G +RG+ F++F A A K++ G+ K F F+ + +
Sbjct: 157 AVDSS--GQSRGYGFVQFEQEDAAQSAIKQVN------GMLLIEKQVFVGPFVRRQERDL 208
Query: 371 ----AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A+ V+V L + +D ++ + +G I+ + R+ P K K FGFV F+ D
Sbjct: 209 TGGIAKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRD-PEGKSKCFGFVNFENAD 267
Query: 427 AAVTCAKSINNAEL 440
A + +N ++
Sbjct: 268 DAALAVEELNGKKM 281
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 130/304 (42%), Gaps = 42/304 (13%)
Query: 166 NAGEEAERP-EMVDAEEHD---HHEMFQER----RKRKEFEVFVGGLDKDVVGDDLRKVF 217
N G++A R EM++ + MF R RK +F+ LDK + L F
Sbjct: 86 NTGQDASRALEMLNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTF 145
Query: 218 SQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS---Q 274
+Q G + ++ ++ + +++G+ F++F + A+ A+ ++ ++ KQ V P Q
Sbjct: 146 AQFGNILSCKVAVD-SSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQ 204
Query: 275 DSD---------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
+ D +++ N+ T + LK +G + ++ D EG ++ F F
Sbjct: 205 ERDLTGGIAKFNNVYVKNLGDATTDDDLKRVFGEFG--PISSAVVMRDP--EGKSKCFGF 260
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMA-------------Q 372
+ F + DA A + L + + D+ V A + E+ A Q
Sbjct: 261 VNFENADDAALAVEELNGKKM---DDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQ 317
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
+++ L + D+D++REL +G I ++ R+ P K GFV F T + A
Sbjct: 318 GVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRD-PQGHSKGSGFVAFSTTEEANRAM 376
Query: 433 KSIN 436
+N
Sbjct: 377 TEMN 380
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 189 QERRKRKE----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER++R + +++ LD + D LR++F G + ++M +PQ +KG F+
Sbjct: 307 QERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQ-GHSKGSGFVA 365
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQDSD 277
F+T E+A +A+TE+ ++ K V +Q D
Sbjct: 366 FSTTEEANRAMTEMNGRMVANKPIYVALAQKRD 398
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 116/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD+ V L +F+QVG+V VR+ + T ++ G+ ++ ++ + A +A+ L
Sbjct: 42 LYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVL 101
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+N K V+ S+ T +F+ N+ K+ +AL E +G + +
Sbjct: 102 NFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFG--TIISCKI 159
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
D++ G ++G+ F+++ S A A +L G+ K + F+ D
Sbjct: 160 ATDAS--GQSKGYGFVQYDSEEAAQTAIDKLN------GMLMNDKQVYVGVFLRKQDRDS 211
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
KT ++V L S ED +R+ YG IT + + R+ K K FGFV F+ +
Sbjct: 212 EMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRD-ADGKSKCFGFVNFENPE 270
Query: 427 AAVTCAKSIN 436
A ++N
Sbjct: 271 DAAKAVDALN 280
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 47/347 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L + FS G + ++ + + ++KG+ F+++ + E A
Sbjct: 123 RKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDA-SGQSKGYGFVQYDSEEAA 181
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDT---------LFLGNICKTWTKEALKEKLKH 299
+ A+ +L ++N KQ V QD D+ +++ N+ + +++ L++
Sbjct: 182 QTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGE 241
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
YG + + ++ D+ +G ++ F F+ F + DA A L + D + V + K
Sbjct: 242 YG--TITSVVVMRDA--DGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKK 297
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F + + D+ Q ++V L + D+++++EL YG IT ++ R
Sbjct: 298 SEREVELKSRFEQTVKEQVDKY--QGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ PS + GFV F T + A + LGE + K V L L + K + +R
Sbjct: 356 D-PSGISRGSGFVAFSTPEEA--------SRALGEMNGKMIVSKPLYVALAQRKEERRAR 406
Query: 468 GDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRL-----PPASV 509
+ + A S G P PG A G+G +L PPA +
Sbjct: 407 LQAQFSQMRPVAMPPSMGPRMPMYSPG--APGMGQQLFYGQAPPAMI 451
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K K ++V L DDLRK F + G +T V ++M K+K F F+ F E
Sbjct: 212 EMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSV-VVMRDADGKSKCFGFVNFENPE 270
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV L + K+ V +Q L++ N+
Sbjct: 271 DAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLD 330
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
T E LKE YG + ++ D + G++RG F+ FS+ +A A + +
Sbjct: 331 DTIDDEKLKELFSEYG--TITSCKVMRDPS--GISRGSGFVAFSTPEEASRALGEMNGKM 386
Query: 346 VLFGVDRPAKVSFA 359
+ V +P V+ A
Sbjct: 387 I---VSKPLYVALA 397
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 26/243 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +V L ++F+QVG V+ +R+ + T+++ +A++ + A +A+ L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
N I GK C + SQ +L F+ N+ K +AL + +G N+ +
Sbjct: 72 NNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG--NILSCKV 129
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
V D N ++GF F+ + ++ A A + + + V G + +K +
Sbjct: 130 VTDDGNS--SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSK--------ER 179
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
G + VF L D+++ELL+ YGEIT I + + K K FGF F++
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESA 238
Query: 426 DAA 428
+AA
Sbjct: 239 EAA 241
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 25/260 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KGF F+ + T E A +A+ ++
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKV 158
Query: 259 KNPVINGKQCGVTPSQDS-----------DTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+ING++ V P + S +F N+ + + LKE L+ YG + +
Sbjct: 159 NGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYG--EITN 216
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+T++ D ++G ++GF F F S A + + + + G +P A I+
Sbjct: 217 ITIMAD--DKGKSKGFGFANFESAEAAKNVVEN-ENGKIFHG--KPIYAGRAQKKIEREA 271
Query: 368 EIMAQVKT------VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVT 421
E+ +T +++ + S D D++RE+ +G IT + ++ + K FGFV
Sbjct: 272 ELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVC 331
Query: 422 FDTHDAAVTCAKSINNAELG 441
+ D A +N +G
Sbjct: 332 YTAPDEATRAVTEMNGRMIG 351
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 126 GNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHH 185
N E +NV E E + G+ P G+ ++++E EAE +
Sbjct: 233 ANFESAEAAKNVVENENGKIFHGK----PIYAGRAQKKIE---REAELKHTFET------ 279
Query: 186 EMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRF 245
K + +++ +D + D LR+VFSQ G +T +M + + +KGF F+ +
Sbjct: 280 -------KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 246 ATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++A +AVTE+ +I K V +Q D
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDI 365
>gi|33390912|gb|AAQ17123.1| flowering time control protein isoform OsFCA-1 [Oryza sativa Indica
Group]
gi|47496990|dbj|BAD20100.1| Flowering time control protein FCA gamma-like [Oryza sativa
Japonica Group]
gi|50261763|gb|AAT72462.1| FCA gamma protein [Oryza sativa Japonica Group]
gi|58003966|gb|AAW62371.1| FCA [Oryza sativa Japonica Group]
Length = 738
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++F+G + + DD+R +F + G+V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 258 LKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGVDNVE 306
L N G + +D LF+ ++ K T + ++E YG +VE
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 240
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
D+ +++D + +RG F++FSSR A+ A L V+ G ++P + FAD
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFAD 292
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 121/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + +KK+ G+A++ + E +A+ EL
Sbjct: 63 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIDEL 122
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ + +F+ N+ +AL + +G L+
Sbjct: 123 NYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----RILSC 178
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 179 KVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRESKF---- 234
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A ++V + + E +L YG+IT I L ++ K K FGFV
Sbjct: 235 ------EEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQ-DGKSKGFGFV 287
Query: 421 TFDTHDAAVTCAKSINNAEL 440
++ H +AV +++N+ E+
Sbjct: 288 NYEEHKSAVEAVEALNDKEI 307
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + + L + F G +T ++M++ K++GF F+ F+T E+A +A+TE+
Sbjct: 347 LFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSRGFGFVCFSTPEEATKAITEM 405
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++NGK V +Q D
Sbjct: 406 NQRMVNGKPLYVALAQRKDV 425
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V +D + + +F+ G++T + L + Q K+KGF F+ + +
Sbjct: 235 EEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKD-QDGKSKGFGFVNYEEHK 293
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV L + ING++ V +Q LF+ N+
Sbjct: 294 SAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLD 353
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
E L+E+ K +G + +V+D+ G +RGF F+ FS+ +A A + +R
Sbjct: 354 DQIDSEKLEEEFKPFGTITSAKV-MVDDA---GKSRGFGFVCFSTPEEATKAITEMNQRM 409
Query: 346 V 346
V
Sbjct: 410 V 410
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 111/265 (41%), Gaps = 36/265 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ L + L FS G + ++ + ++K F F+ + T E A A+ +
Sbjct: 151 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-DLGQSKCFGFVHYETAEAAEAAIENV 209
Query: 259 KNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +D ++ +++ NI ++++ ++ YG
Sbjct: 210 NGMLLNDREVYVGKHVSKKDRESKFEEMKANYTNIYVKNIDLEFSEKEFEDLFAPYG--K 267
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364
+ + L +D +G ++GF F+ + A++A + L +++ + V A +
Sbjct: 268 ITSIYLEKDQ--DGKSKGFGFVNYEEHKSAVEAVEALNDKEI---NGQKIYVGRAQKKRE 322
Query: 365 PGDEIMAQVKTV-------------FVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+E+ Q + + FV L D +++ E K +G IT ++ + +
Sbjct: 323 RTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DA 381
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSIN 436
K + FGFV F T + A +N
Sbjct: 382 GKSRGFGFVCFSTPEEATKAITEMN 406
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 120/256 (46%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + F+ G ++ +R+ + T+++ G+A++ F A +A+ L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK C + SQ +L F+ N+ K +A+ + +G N+ +
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFG--NILSCKI 138
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
D N G ++G+AF+ F ++ A A +++ G+ K F F+ +
Sbjct: 139 ALDEN--GNSKGYAFVHFETQEAANRAIEKVN------GMLLSGKKVFVGHFMSRKERME 190
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+ A+ ++V +D R+L + G+I + R+ S K + FGFV+++T
Sbjct: 191 KIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGFGFVSYET 249
Query: 425 HDAAVTCAKSINNAEL 440
H+AA +++N E
Sbjct: 250 HEAAQKAVETLNEKEF 265
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V D+ D+ R +F Q G++ ++M + K++GF F+ + T E A++AV L
Sbjct: 202 LYVKNFRDDISDDEFRDLFEQCGKIVSC-VVMRDDSGKSRGFGFVSYETHEAAQKAVETL 260
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ++ V +Q L++ N+ L+
Sbjct: 261 NEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLR 320
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
++ ++G + S+ +G++RGF F+ FSS +A A + R + + +P
Sbjct: 321 QEFANFGTITSAKVM----SDEKGISRGFGFVCFSSPEEATKAVTEMNGRII---ISKPL 373
Query: 355 KVSFADSFIDPGDEIMAQ 372
V+ A D ++ AQ
Sbjct: 374 YVALAQRKEDRKAQLAAQ 391
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 164 VENAGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGD-DLRKVFSQVG 221
V A +++ER ++ + + QE KR + ++V LD DV+ D LR+ F+ G
Sbjct: 272 VARAQKKSERSALL---RRQYEQKKQEMMKRFQGVNLYVKNLD-DVIDDAKLRQEFANFG 327
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+T ++M + + ++GF F+ F++ E+A +AVTE+ +I K V +Q
Sbjct: 328 TITSAKVM-SDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQ 379
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 22/260 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L +VF+ +G V +R+ + T+K+ G+A++ + + + A A+ L
Sbjct: 29 LYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALENL 88
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G + S +L F+ N+ K+ ++L + H+G + +
Sbjct: 89 NYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHFG--TILSCKV 146
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS G +R + F+ + S A +A +++ +L G KV A F+ D
Sbjct: 147 AVDST--GASRRYGFVHYESEESAREAIEKVN--GMLIG---GKKVEVA-PFLRKQDRET 198
Query: 371 AQVKT-VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+V T ++V PA WDE+ +R+ L+ YGEIT + L + +K + F FV + A
Sbjct: 199 EEVYTNLYVRNFPADWDEEALRQFLEKYGEITSMMLKED---SKGRRFAFVNYKEASVAK 255
Query: 430 TCAKSINNAELGEGDNKAKV 449
++N+ +L E + V
Sbjct: 256 EVVTTLNDLKLEEASDPLLV 275
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 126/285 (44%), Gaps = 37/285 (12%)
Query: 165 ENAGEEAERPEMVDAEEHDHHEMFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQV 220
++A E ++ + H M+ R RK +FV LDK + L F+
Sbjct: 79 QDAEAALENLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHF 138
Query: 221 GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP---SQDSD 277
G + ++ ++ T ++ + F+ + + E AR+A+ ++ +I GK+ V P QD +
Sbjct: 139 GTILSCKVAVD-STGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRE 197
Query: 278 T------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
T L++ N W +EAL++ L+ YG + + L EDS R FAF+ +
Sbjct: 198 TEEVYTNLYVRNFPADWDEEALRQFLEKYG--EITSMMLKEDSK----GRRFAFVNYKEA 251
Query: 332 SDA------MDAFKRLQKRDVLF------GVDRPAKVSFADSFIDPGDEIMAQVKTVFVD 379
S A ++ K + D L V R + S + PG + +++
Sbjct: 252 SVAKEVVTTLNDLKLEEASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDDKRLTSNLYIK 311
Query: 380 GLPASWDEDRVRELLKNYGEIT--KIELARNMPSAKRKDFGFVTF 422
L ++D+ + EL K +G IT K+ L N S + FGFV F
Sbjct: 312 NLDDTFDDASLGELFKQFGTITSSKVMLDANNNS---RGFGFVCF 353
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ ++EL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ ++ G ++GF F+ + DA A K + + + G V+R A
Sbjct: 216 -KTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 239 EKHEDANKAVEEMNG---KEMSGKAIFVGRAQKKVERQAELKRKFE----------QLKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LR+ FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 151/347 (43%), Gaps = 42/347 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G V +R+ + T+++ G++++ + +A+ EL
Sbjct: 55 LYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERALEEL 114
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 115 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 172
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + RG+ F+ + + A +A K L ++ V G P K F
Sbjct: 173 AQDEFSNS--RGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKK-DRQSKF--- 226
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
DE+ A V+V + ++ R + +NYG IT L+R+ R FGFV F H
Sbjct: 227 -DEMKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSR-GFGFVNFQEH 284
Query: 426 DAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWG 485
A + ++ +EL + + PL+ K ++R + R + TR +
Sbjct: 285 QHAAKAVEELHESEL---------KGQTLYPLELRKLA-STRVSICTSRIS--MTRSTTS 332
Query: 486 LPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSMTAR--ARP 530
+ S RSLP R + RL S+ R VRD S+ R ARP
Sbjct: 333 V-SARSLP-RMELSLPPRLCVMSLVR---VRDLVLSASLARRKLARP 374
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ ++EL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 118/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ ++ G ++GF F+ + DA A K + + + G V+R A
Sbjct: 216 -KTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R+ +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 239 EKHEDANKAVEEMNG---KEMSGKAIFVGRAQKKVERQAELKRKFE----------QLKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|339248325|ref|XP_003375796.1| RNA-binding protein squid [Trichinella spiralis]
gi|316970795|gb|EFV54670.1| RNA-binding protein squid [Trichinella spiralis]
Length = 329
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 86/142 (60%), Gaps = 6/142 (4%)
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
++R K +E ++FVGG+ D +DL F+Q G+V V++ + T +++GFAF+ FAT
Sbjct: 50 KKREKNEERKIFVGGISWDTNENDLTNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATA 109
Query: 249 EQARQAVTELKNPVINGKQCGVTP--SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
E ++A+ + K+ + GK+C V P S+++ LF+G + +T+E L++ ++ +G VE
Sbjct: 110 EACKKALAK-KDAELKGKKCEVKPAKSRENKKLFVGGLPSDYTEELLRKHMEQFG--RVE 166
Query: 307 DLTLVEDSNNEGMNRGFAFLEF 328
++ D N + FAF+ F
Sbjct: 167 EIEWPFDKVNN-KRKNFAFIVF 187
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 279 LFLGNICKTWTKEALKEKLKHYG-VDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337
+F+G I + L +G V +V+ V+ + G +RGFAF+EF++ A
Sbjct: 60 IFVGGISWDTNENDLTNHFNQFGDVVHVQ----VKYDHYTGRSRGFAFVEFAT---AEAC 112
Query: 338 FKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
K L K+D A++ + P + K +FV GLP+ + E+ +R+ ++ +
Sbjct: 113 KKALAKKD--------AELKGKKCEVKPAKS--RENKKLFVGGLPSDYTEELLRKHMEQF 162
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHD 426
G + +IE + + KRK+F F+ F+ D
Sbjct: 163 GRVEEIEWPFDKVNNKRKNFAFIVFEDDD 191
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + TK + G+A++ F E R+A+ +L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G ++ +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKI 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D N G ++GF F+ F A +A D L G+ + + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAAKEAI------DALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+E A ++V + + +++ +EL +G I L ++ K K FGFV ++
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEK 268
Query: 425 HDAAVTCAKSINNAEL 440
H+ AV +++N++EL
Sbjct: 269 HEDAVKAVEALNDSEL 284
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 30/262 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G++ ++ + + K+KGF F+ F A
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 179
Query: 252 RQAVTELKNPVINGKQCGVTP--------SQDSDT------LFLGNICKTWTKEALKEKL 297
++A+ L ++NG++ V P SQ +T L++ NI T E +E
Sbjct: 180 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 239
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPA 354
+G + +L +D+ +G +GF F+ + DA+ A + L ++ V R
Sbjct: 240 AKFGP--IVSASLEKDA--DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 355 KVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + + E MA+ + V FV L S D++++ E YG IT ++ R
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAV 429
+ K K FGFV F T + A
Sbjct: 356 T-ENGKSKGFGFVCFSTPEEAT 376
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD V + L + F+ G +T ++M + K+KGF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 383 NQQIVAGKPLYVAIAQRKDV 402
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V ++ + + +++F++ G + L + K KGF F+ + E A +AV L
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ +NG++ V +Q + LF+ N+ + E L+
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ YG + E+ G ++GF F+ FS+ +A A ++ V +P
Sbjct: 340 EEFAPYGTITSAKVMRTEN----GKSKGFGFVCFSTPEEATKAITEKNQQIV---AGKPL 392
Query: 355 KVSFA 359
V+ A
Sbjct: 393 YVAIA 397
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L +F+QVG+V VR+ + ++++ G+ ++ ++ A +A+ L
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVL 90
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NG V S S +F+ N+ K +AL + +G ++ +
Sbjct: 91 NFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG--SILSCKV 148
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G ++GF F++F + A+ A ++L G+ K F F+ +
Sbjct: 149 ATDSS--GQSKGFGFVQFDTEEAALKAIEKLN------GMLLNDKQVFVGPFLRKQERES 200
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
KT VFV L + E+ ++ + +G IT + + R+ K K FGFV F+ D
Sbjct: 201 VSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRD-GEGKSKCFGFVNFENAD 259
Query: 427 AAVTCAKSIN 436
A +++N
Sbjct: 260 DAARSVEALN 269
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 122/269 (45%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + + ++KGF F++F T E A
Sbjct: 112 RKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAA 170
Query: 252 RQAVTELKNPVINGKQCGVTP------------SQDSDTLFLGNICKTWTKEALKEKLKH 299
+A+ +L ++N KQ V P + +F+ N+ +T ++E LK
Sbjct: 171 LKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGE 230
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKV 356
+G + + ++ D EG ++ F F+ F + DA + + L + V + V + K
Sbjct: 231 FG--PITSVVVMRDG--EGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKK 286
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F S + D+ Q ++V L S D+D+++EL +G IT ++ R
Sbjct: 287 SEREVELKSRFEQSVKEAADKY--QGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMR 344
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ P+ + GFV F + + A +N
Sbjct: 345 D-PNGISRGSGFVAFSSPEEAARALAEMN 372
>gi|218201679|gb|EEC84106.1| hypothetical protein OsI_30426 [Oryza sativa Indica Group]
Length = 758
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++F+G + + DD+R +F + G+V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 258 LKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGVDNVE 306
L N G + +D LF+ ++ K T + ++E YG +VE
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 240
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
D+ +++D + +RG F++FSSR A+ A L V+ G ++P + FAD
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFAD 292
>gi|296083224|emb|CBI22860.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++FVG + + +D+R +F + G V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 42 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 101
Query: 258 LKNP-VINGKQCGVTPSQ----DSD---------TLFLGNICKTWTKEALKEKLKHYGVD 303
L N + G GV P Q D + LF+G++ K T++ +KE YG
Sbjct: 102 LHNQYTLPG---GVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG-- 156
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
VED+ L+ D + +RG F++FS R AM A L + G D+P V FAD
Sbjct: 157 QVEDVYLMRDELKQ--SRGCGFVKFSHRDMAMAAINALNGIYTMRGCDQPLTVRFAD 211
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G++ +T T+E ++ + +G NV ++ L++D G +G F+++++ +A A
Sbjct: 43 LFVGSVPRTATEEDIRPLFEEHG--NVLEVALIKDKRT-GQQQGCCFIKYATSEEAERAI 99
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGD-EIMAQVK-TVFVDGLPASWDEDRVRELLKN 396
+ L + L G P +V +AD G+ E + V+ +FV L E V+E+
Sbjct: 100 RALHNQYTLPGGVGPIQVRYAD-----GERERLGAVEYKLFVGSLNKQATEKEVKEIFSP 154
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
YG++ + L R+ R GFV F D A+ ++N
Sbjct: 155 YGQVEDVYLMRDELKQSR-GCGFVKFSHRDMAMAAINALN 193
Score = 46.2 bits (108), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
ER E+++FVG L+K +++++FS G+V +V LM + + K+++G F++F+ +
Sbjct: 125 ERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRD-ELKQSRGCGFVKFSHRD 183
Query: 250 QARQAVTEL 258
A A+ L
Sbjct: 184 MAMAAINAL 192
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ ++EL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ ++ G ++GF F+ + DA A K + + + G V+R A
Sbjct: 216 -KTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R +G IT ++ +
Sbjct: 275 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDG 330
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 239 EKHEDANKAVEEMNG---KEMSGKAIFVGRAQKKVERQAELKRKFE----------QLKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LR+ FS G +T ++M+ + ++KGF F+ F++
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + ++ M+ ++KGF F+++ E A+ A+ L
Sbjct: 212 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEESAQSAMKSL 270
Query: 259 KNPVINGKQCGVTP---------SQDS---DTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
+IN K V P S D + +F+ N+ ++ TKE L + YG
Sbjct: 271 NGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSA 330
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL---FGVDRPAKVS------ 357
+ + D G +R F F+ F S DA A + L + + + V R K S
Sbjct: 331 VVMIGMD----GKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDL 386
Query: 358 ---FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F S D D+ Q +++ L +D++REL N+G+IT ++ R+ +
Sbjct: 387 KRRFEQSMKDAADKYQGQ--NLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQ-NGVS 443
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K GFV+F T + A +N
Sbjct: 444 KGSGFVSFSTREEASQALTEMN 465
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 17/253 (6%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L ++FSQ G+V VR+ + ++++ G+A++ ++ A +A+ L
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+N K V S S +F+ N+ KT + L + +G L+
Sbjct: 184 NFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA----ILSC 239
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS-FADSFIDPGDEI 369
++ G ++GF F+++ A A K L + + D+P V F
Sbjct: 240 KVAMDDIGQSKGFGFVQYEKEESAQSAMKSL---NGMLINDKPVYVGPFLRKQERDNSSD 296
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
A+ VFV L S ++ + ++ YG IT + M K + FGFV F++ D A
Sbjct: 297 KAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGM-DGKSRCFGFVNFESPDDAA 355
Query: 430 TCAKSINNAELGE 442
+ +N ++ +
Sbjct: 356 RAVEELNGKKIND 368
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 32/191 (16%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K K VFV L + +DL KVFS+ G +T +M+ K++ F F+ F + + A
Sbjct: 297 KAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIG-MDGKSRCFGFVNFESPDDAA 355
Query: 253 QAVTELKNPVINGKQCGVTPSQ------------------------DSDTLFLGNICKTW 288
+AV EL IN K+ V +Q L+L N+
Sbjct: 356 RAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348
T + L+E ++G + ++ D N G+++G F+ FS+R +A A + + +
Sbjct: 416 TDDQLRELFSNFG--KITSCKIMRDQN--GVSKGSGFVSFSTREEASQALTEMNGKMI-- 469
Query: 349 GVDRPAKVSFA 359
+P V+FA
Sbjct: 470 -SGKPLYVAFA 479
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
V E DD A E ++ E V A +++ER EM D + M K +
Sbjct: 346 VNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSER-EM-DLKRRFEQSMKDAADKYQG 403
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
+++ LD + D LR++FS G++T ++M + Q +KG F+ F+T E+A QA+T
Sbjct: 404 QNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRD-QNGVSKGSGFVSFSTREEASQALT 462
Query: 257 ELKNPVINGKQCGVTPSQ 274
E+ +I+GK V +Q
Sbjct: 463 EMNGKMISGKPLYVAFAQ 480
>gi|124513886|ref|XP_001350299.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23615716|emb|CAD52708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 509
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++F+G + K++ D LR +F + G V EV ++ + T +K AF++ A++ +A A+
Sbjct: 85 IKLFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKITNVHKSSAFVKMASISEADNAIR 144
Query: 257 ELKNPVINGKQCG-------------------VTPSQDSDTLFLGNICKTWTKEALKEKL 297
L N Q G + D LF+G++ K T++ +KE
Sbjct: 145 LLNNQKTLDAQLGSLQVKYASGELNKLGFPQNIESGVDQAKLFIGSLPKNITEDNIKEMF 204
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
YG VE++ +++D N+ G+ +G +F++FS + A+ A K L + L G RP +V
Sbjct: 205 SPYGT--VEEVFIMKD-NSTGLGKGCSFVKFSYKEQALYAIKSLNGKKTLEGCTRPVEVR 261
Query: 358 FAD 360
FA+
Sbjct: 262 FAE 264
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 11/184 (5%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + K ++ L+ + YG+ V ++ ++ D +++ AF++ +S S+A +A
Sbjct: 87 LFIGRVPKNIEEDQLRPIFEEYGI--VNEVVIIRDKI-TNVHKSSAFVKMASISEADNAI 143
Query: 339 KRLQKRDVLFGVDRPAKVSFADS------FIDPGDEIMAQVKTVFVDGLPASWDEDRVRE 392
+ L + L +V +A F + + Q K +F+ LP + ED ++E
Sbjct: 144 RLLNNQKTLDAQLGSLQVKYASGELNKLGFPQNIESGVDQAK-LFIGSLPKNITEDNIKE 202
Query: 393 LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ YG + ++ + ++ + K FV F + A+ KS+N + EG + V R
Sbjct: 203 MFSPYGTVEEVFIMKDNSTGLGKGCSFVKFSYKEQALYAIKSLNGKKTLEGCTRP-VEVR 261
Query: 453 LSRP 456
+ P
Sbjct: 262 FAEP 265
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ + + DL + FS GE+ R+ T +N+GFAF+ + ++E A A++++
Sbjct: 371 LFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQM 430
Query: 259 KNPVINGKQCGVT 271
+ K+ VT
Sbjct: 431 NGFMALNKKLKVT 443
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 26/260 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L +F+Q+G+V VR+ + ++++ G+ ++ + + A +A+ L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
++GK + S T +F+ N+ K +AL + +G N+ +
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFG--NILSCKV 146
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G ++G+ F+++ S A A ++L G+ K + F+ + M
Sbjct: 147 AVDSS--GQSKGYGFVQYDSEEAAQKAIEKLN------GMLLNDKQVYVGPFVRKHERDM 198
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A KT VFV L S E+ +R++ +G IT + + ++ K + FGFV F+ +
Sbjct: 199 AVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKD-EDGKSRCFGFVNFENAE 257
Query: 427 AAVTCAKSINNAELGEGDNK 446
A +++N +L DNK
Sbjct: 258 DAARAVEALNGYKL---DNK 274
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 148/347 (42%), Gaps = 50/347 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + ++ ++ + ++KG+ F+++ + E A++A+ +L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSEEAAQKAIEKL 175
Query: 259 KNPVINGKQCGVTP------------SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
++N KQ V P +F+ N+ ++ +E L++ +G +
Sbjct: 176 NGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGA--IT 233
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVS---- 357
+ +++D +G +R F F+ F + DA A + +L +D G R K S
Sbjct: 234 SVAVMKDE--DGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVG--RAQKKSEREM 289
Query: 358 -----FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
F S + D+ +Q +++ L S +++++EL YG IT ++ R+ PS
Sbjct: 290 ELKHRFEQSAKEAVDK--SQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRD-PSG 346
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINN-------AELGEGDNKAKVRARLS------RPLQR 459
K GFV F + A +N + K + RARL RP+
Sbjct: 347 VSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAM 406
Query: 460 GKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPP 506
A R G G + +G P P LP ++ G +L P
Sbjct: 407 ASSV-APRMPMYPPGGPGLGQQIFYGQPQPAMLPPQAGFGYQQQLVP 452
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 32/199 (16%)
Query: 185 HEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
HE K + VFV L + + ++LRK+F + G +T V +M + + K++ F F+
Sbjct: 194 HERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKD-EDGKSRCFGFVN 252
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLF 280
F E A +AV L ++ K V +Q L+
Sbjct: 253 FENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLY 312
Query: 281 LGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKR 340
+ N+ + + E LKE YG + ++ D + G+++G F+ FS+ +A A
Sbjct: 313 IKNLDDSISDEKLKELFSPYG--TITSCKVMRDPS--GVSKGSGFVAFSNPEEASRALSE 368
Query: 341 LQKRDVLFGVDRPAKVSFA 359
+ + V V +P V+ A
Sbjct: 369 MNGKMV---VSKPLYVALA 384
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +++ LD + + L+++FS G +T ++M +P + +KG F+ F+ E+A
Sbjct: 305 KSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSNPEEAS 363
Query: 253 QAVTELKNPVINGKQCGVTPSQ 274
+A++E+ ++ K V +Q
Sbjct: 364 RALSEMNGKMVVSKPLYVALAQ 385
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L +F+QVG+V VR+ + ++++ G+ ++ ++ A +A+ L
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVL 90
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NG V S S +F+ N+ K +AL + +G ++ +
Sbjct: 91 NFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG--SILSCKV 148
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G ++GF F++F + A+ A ++L G+ K F F+ +
Sbjct: 149 ATDSS--GQSKGFGFVQFDTEEAALKAIEKLN------GMLLNDKQVFVGPFLRKQERES 200
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
KT VFV L + E+ ++ + +G IT + + R+ K K FGFV F+ D
Sbjct: 201 VSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRD-GEGKSKCFGFVNFENAD 259
Query: 427 AAVTCAKSIN 436
A +++N
Sbjct: 260 DAARSVEALN 269
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 122/269 (45%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + + ++KGF F++F T E A
Sbjct: 112 RKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAA 170
Query: 252 RQAVTELKNPVINGKQCGVTP------------SQDSDTLFLGNICKTWTKEALKEKLKH 299
+A+ +L ++N KQ V P + +F+ N+ +T ++E LK
Sbjct: 171 LKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGE 230
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKV 356
+G + + ++ D EG ++ F F+ F + DA + + L + V + V + K
Sbjct: 231 FG--PITSVVVMRDG--EGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKK 286
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F S + D+ Q ++V L S D+D+++EL +G IT ++ R
Sbjct: 287 SEREVELKSRFEQSVKEAADKY--QGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMR 344
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ P+ + GFV F + + A +N
Sbjct: 345 D-PNGISRGSGFVAFSSPEEAARALAEMN 372
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 32/191 (16%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K K VFV L + +DL+ +F + G +T V +M + + K+K F F+ F + A
Sbjct: 204 KTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENADDAA 262
Query: 253 QAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTW 288
++V L ++GK+ V +Q L++ N+ +
Sbjct: 263 RSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSI 322
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348
+ LKE +G + ++ D N G++RG F+ FSS +A A + R +
Sbjct: 323 DDDKLKELFTGFG--TITSCKVMRDPN--GISRGSGFVAFSSPEEAARALAEMNGRMI-- 376
Query: 349 GVDRPAKVSFA 359
V +P V+ A
Sbjct: 377 -VSKPLYVALA 386
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+ GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 147
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 148 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 201
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D+ ++EL +G+ +++ R+ S K K FGFV+++ H+
Sbjct: 202 AKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHED 260
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 261 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISR 307
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 175
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + LKE +G
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFG--- 232
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
+ L++ ++ G ++GF F+ + DA A K + + + G V+R A
Sbjct: 233 -KTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 291
Query: 355 KVSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ F E +++ + V ++ L + D++++R +G IT ++ +
Sbjct: 292 ELK--RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVM--LEDG 347
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F + + A +N +G
Sbjct: 348 RSKGFGFVCFSSPEEATKAVTEMNGRIVG 376
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
++H+D N EE + EM G+ +++VE E + E ++ Q
Sbjct: 256 EKHEDANKAVEEMNG---KEMSGKAIFVGRAQKKVERQAELKRKFE----------QLKQ 302
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
ER R + +++ LD + + LR+ FS G +T ++M+ + ++KGF F+ F++
Sbjct: 303 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSP 360
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 361 EEATKAVTEMNGRIVGSKPLYVALAQ 386
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 147/309 (47%), Gaps = 46/309 (14%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K ++ ++VG L DV D L K FS VG V +R+ + T+++ G+A++ F + A+
Sbjct: 6 KYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQ 65
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDN 304
+A+ + +I GK + SQ L F+ N+ K+ + L E +G
Sbjct: 66 KALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG--- 122
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ---KRDVLFGV-------DRPA 354
+ L+ S+++G +RG+AF+ F ++ A A + + +D V DR A
Sbjct: 123 -KILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREA 180
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + +E V++ D++R++E+ YG+ +++ R+ S K
Sbjct: 181 ELQ------NKANEF----TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRD-SSGKS 229
Query: 415 KDFGFVTFDTHDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGKGKHASR 467
K FGFV+FD+H+AA + +N N +L G KA+ +A L + ++ K R
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK-----R 284
Query: 468 GDFRSGRGT 476
FR +G
Sbjct: 285 ERFRRCQGV 293
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 116/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L + FS G++ ++M + Q ++G+AF+ F A +A+ E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEM 157
Query: 259 KNPVINGKQCGV----------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGV 302
++ K C + + + +++ N E LKE YG
Sbjct: 158 NGALL--KDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYG- 214
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFA 359
+ L++ ++ G ++GF F+ F S A A + + +D+ L V R K +
Sbjct: 215 ---KTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAER 271
Query: 360 DSFIDPGDEIM-------AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
+ + E + Q +++ L + D++++R ++G I+++++ +
Sbjct: 272 QAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEG 329
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FG + F + + A +N LG
Sbjct: 330 RSKGFGLICFSSPEEATKAMTEMNGRILG 358
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 186 EMFQERRKRKEF------EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKG 239
+MF E+ KR+ F ++++ LD+ + + LR+ FS G ++ V++M + ++KG
Sbjct: 277 QMF-EQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVM--QEEGRSKG 333
Query: 240 FAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F + F++ E+A +A+TE+ ++ K + +Q
Sbjct: 334 FGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQ 368
>gi|302673016|ref|XP_003026195.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
gi|300099876|gb|EFI91292.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
Length = 218
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 27/166 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VFVGGL DV D L++ F++ G++ +MM+ QT ++GF ++ FAT EQA++A E+
Sbjct: 5 VFVGGLPFDVDNDRLQQEFAKFGDIESAIVMMDRQTGNSRGFGYVHFATHEQAKKAKEEM 64
Query: 259 -----------------------KNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKE 295
+P +Q G PS+ S TLF+GN+ + T++A+
Sbjct: 65 DGYELDGRNIRTGTATKPQPKGAHDPSSRARQFGDKPSEPSSTLFVGNLSWSATEDAVWG 124
Query: 296 KLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
YGV NV T E G +GF ++EF A A++ L
Sbjct: 125 LFNEYGVKNVRLPTEFE----TGRPKGFGYVEFEDIEGAKKAYEAL 166
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431
+ +VFV GLP D DR+++ +G+I + + + + FG+V F TH+ A
Sbjct: 1 EYTSVFVGGLPFDVDNDRLQQEFAKFGDIESAIVMMDRQTGNSRGFGYVHFATHEQAKKA 60
Query: 432 AKSINNAEL 440
+ ++ EL
Sbjct: 61 KEEMDGYEL 69
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA--- 334
++F+G + + L+++ +G ++E ++ D G +RGF ++ F++ A
Sbjct: 4 SVFVGGLPFDVDNDRLQQEFAKFG--DIESAIVMMDRQT-GNSRGFGYVHFATHEQAKKA 60
Query: 335 ---MDAFKRLQKRDVLFGVDRPAKVSFADSFIDP-------GDEIMAQVKTVFVDGLPAS 384
MD ++ L R++ G + A DP GD+ T+FV L S
Sbjct: 61 KEEMDGYE-LDGRNIRTGTATKPQPKGAH---DPSSRARQFGDKPSEPSSTLFVGNLSWS 116
Query: 385 WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444
ED V L YG + + L + + K FG+V F+ + A +++ AEL +G
Sbjct: 117 ATEDAVWGLFNEYG-VKNVRLPTEFETGRPKGFGYVEFEDIEGAKKAYEALAGAEL-DGR 174
Query: 445 NKAKVRARLSRP 456
N +R S+P
Sbjct: 175 N---IRLDYSQP 183
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FVG L D + +F++ G V VRL +T + KGF ++ F +E A++A L
Sbjct: 108 LFVGNLSWSATEDAVWGLFNEYG-VKNVRLPTEFETGRPKGFGYVEFEDIEGAKKAYEAL 166
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++G+ + SQ D+
Sbjct: 167 AGAELDGRNIRLDYSQPRDS 186
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 112/260 (43%), Gaps = 32/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +FS +G V+ +R+ + TK + G+A++ F E RQA+ +L
Sbjct: 42 LYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIEKL 101
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G N+ +
Sbjct: 102 NYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFG--NILSCKI 159
Query: 311 VEDSNNEGMNRGFAFLEFSS---RSDAMDAFK--RLQKRDVLFG-----VDRPAKVSFAD 360
D G ++GF F+ F S +A+DA L ++V DR +K+
Sbjct: 160 ATDEVT-GNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKL---- 214
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E A V++ + E E K +T + L ++ K + FGFV
Sbjct: 215 ------EEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKD-SEGKLRGFGFV 267
Query: 421 TFDTHDAAVTCAKSINNAEL 440
++TH A + +N E
Sbjct: 268 NYETHAGAAKAVEELNGVEF 287
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 121/282 (42%), Gaps = 42/282 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G + ++ + T +KGF F+ F + E A
Sbjct: 123 RKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAA 182
Query: 252 RQAVTELKNPVINGKQCGVTP--------------SQDSDTLFLGNICKTWTKEALKEKL 297
R+A+ + ++NG++ V P + +++ NI ++ +E
Sbjct: 183 REAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFF 242
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD---RPA 354
K V V + L +DS EG RGF F+ + + + A A + L GV+ +
Sbjct: 243 KK--VAPVTSVHLEKDS--EGKLRGFGFVNYETHAGAAKAVEELN------GVEFHGQQL 292
Query: 355 KVSFADSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNYGEIT 401
V A + E+ Q + +F+ L S D++R+RE +G IT
Sbjct: 293 HVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTIT 352
Query: 402 KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
+++ + K K FGFV F T + A T A + N ++ G
Sbjct: 353 SVKVM-TTENGKSKGFGFVCFSTPEEA-TKAITEKNQQIVAG 392
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LD + + LR+ FS G +T V++M + K+KGF F+ F+T E+A +A+TE
Sbjct: 327 LFIKNLDDSIDDERLREEFSPFGTITSVKVMTT-ENGKSKGFGFVCFSTPEEATKAITEK 385
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 386 NQQIVAGKPLYVAIAQRKDV 405
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 26/260 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L +F+Q+G+V VR+ + ++++ G+ ++ + + A +A+ L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
++GK + S T +F+ N+ K +AL + +G N+ +
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFG--NILSCKV 146
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G ++G+ F+++ S A A ++L G+ K + F+ + M
Sbjct: 147 AVDSS--GQSKGYGFVQYDSDEAAQKAIEKLN------GMLLNDKQVYVGPFVRKQERDM 198
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A KT VFV L S E+ +R++ +G IT + + ++ K + FGFV F+ +
Sbjct: 199 AVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKD-EDGKSRCFGFVNFENAE 257
Query: 427 AAVTCAKSINNAELGEGDNK 446
A +++N +L DNK
Sbjct: 258 DAARAVEALNGYKL---DNK 274
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 150/345 (43%), Gaps = 46/345 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + ++ ++ + ++KG+ F+++ + E A++A+ +L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSDEAAQKAIEKL 175
Query: 259 KNPVINGKQCGVTP---SQDSD---------TLFLGNICKTWTKEALKEKLKHYGVDNVE 306
++N KQ V P Q+ D +F+ N+ ++ +E L++ +G +
Sbjct: 176 NGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFG--TIT 233
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVS---- 357
+ +++D +G +R F F+ F + DA A + +L +D G R K S
Sbjct: 234 SVAVMKDE--DGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVG--RAQKKSEREM 289
Query: 358 -FADSFIDPGDEIM--AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E + +Q +++ L S +D+++EL YG IT ++ R+ PS
Sbjct: 290 ELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRD-PSGVS 348
Query: 415 KDFGFVTFDTHDAAVTCAKSINN-------AELGEGDNKAKVRARLS------RPLQRGK 461
K GFV F T + A +N + K + RARL RP+
Sbjct: 349 KGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMAS 408
Query: 462 GKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPP 506
A R G G + +G P P LP ++ G +L P
Sbjct: 409 SV-APRMPMYPPGGPGLGQQIFYGQPPPAMLPPQAGFGYQQQLVP 452
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 34/192 (17%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + VFV L + + ++LRK+F + G +T V +M + + K++ F F+ F E A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKD-EDGKSRCFGFVNFENAEDAA 260
Query: 253 QAV-------------------------TELKNPVINGKQCGVTPSQDSDTLFLGNICKT 287
+AV ELK+ Q V SQ + L+L N+ +
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLN-LYLKNLDDS 319
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347
+ + LKE YG + ++ D + G+++G F+ FS+ +A A + + V
Sbjct: 320 ISDDKLKELFSPYG--TITSCKVMRDPS--GVSKGSGFVAFSTPEEASRALSEMNGKMV- 374
Query: 348 FGVDRPAKVSFA 359
V +P V+ A
Sbjct: 375 --VSKPLYVALA 384
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 30/168 (17%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V++++ E V+ + + ++ D VG ++ E E++ E+ Q
Sbjct: 248 FGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQ------- 300
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
E VD K + +++ LD + D L+++FS G +T
Sbjct: 301 --------EAVD--------------KSQGLNLYLKNLDDSISDDKLKELFSPYGTITSC 338
Query: 227 RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++M +P + +KG F+ F+T E+A +A++E+ ++ K V +Q
Sbjct: 339 KVMRDP-SGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQ 385
>gi|115478012|ref|NP_001062601.1| Os09g0123200 [Oryza sativa Japonica Group]
gi|34555646|gb|AAQ74971.1| flowering time control protein isoform OsFCA-3 [Oryza sativa Indica
Group]
gi|113630834|dbj|BAF24515.1| Os09g0123200 [Oryza sativa Japonica Group]
Length = 637
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++F+G + + DD+R +F + G+V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 81
Query: 258 LKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGVDNVE 306
L N G + +D LF+ ++ K T + ++E YG +VE
Sbjct: 82 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 139
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
D+ +++D + +RG F++FSSR A+ A L V+ G ++P + FAD
Sbjct: 140 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFAD 191
>gi|34555650|gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [Oryza sativa Indica
Group]
Length = 626
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++F+G + + DD+R +F + G+V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 81
Query: 258 LKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGVDNVE 306
L N G + +D LF+ ++ K T + ++E YG +VE
Sbjct: 82 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 139
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
D+ +++D + +RG F++FSSR A+ A L V+ G ++P + FAD
Sbjct: 140 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFAD 191
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 31/261 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VFV L + L+ +F + G + ++++ + K+KG+ F++F + E A A+ +L
Sbjct: 102 VFVKNLSDSIDNVRLQAMFQKFGNILSCKVVVT-EDGKSKGYGFVQFESEEYANAAIEKL 160
Query: 259 KNPVINGKQCG----------VTPSQDS--DTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
+I+GKQ V P+ D+ L++ N+ T+EAL+EK +G +
Sbjct: 161 NGFIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFG--KIA 218
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSD---AMDAFKRLQKRDVLFGVDRPAKVS-----F 358
L + +D N GM+RGF F+ F S D A++A LQ + V R K +
Sbjct: 219 SLVISKDEN--GMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLL 276
Query: 359 ADSFIDPGDEIMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD 416
F + +E + + + V+V + + ++D +RE G+IT +L R+ K
Sbjct: 277 RRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGIS-KG 335
Query: 417 FGFVTFDTHDAAVTCAKSINN 437
FGFV F T D A +K++N
Sbjct: 336 FGFVCFSTPDEA---SKAVNT 353
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 116/255 (45%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D+ L FS+ + VR+ + + ++ + ++ F + + A A+
Sbjct: 14 LYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEAK 73
Query: 259 KNPVINGKQCGVTPSQ-DSDT-------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+ +++GK V S D D +F+ N+ + L+ + +G + +
Sbjct: 74 NHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKVVV 133
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
ED G ++G+ F++F S A A ++L F +D K +A F+ D ++
Sbjct: 134 TED----GKSKGYGFVQFESEEYANAAIEKLNG----FIID--GKQIYAGKFVRKTDRVL 183
Query: 371 ----AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A+ +++ L E+ +RE +G+I + ++++ R FGFV F++ +
Sbjct: 184 PNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSR-GFGFVNFESPE 242
Query: 427 AAVTCAKSINNAELG 441
A +++N +LG
Sbjct: 243 DAKRALEALNGLQLG 257
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 35/284 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L + L FSQ G V +R+ + T+++ G+A++ F E A +A+ +
Sbjct: 13 LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKE--KLKHYGVDNVEDLTLVEDSNN 316
N Q V + + KTWT+ + + + N+ L+ + N
Sbjct: 73 -----NFIQLSVNLASAISS------SKTWTRLSTTKCCTIPFSAFGNI--LSCKVNVNL 119
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI------M 370
G ++G+ F+ F + A+ A ++L G+ K F F G+ +
Sbjct: 120 AGESKGYGFVHFETEEAAVKAIEKLD------GMLMNDKKVFVGRFKSRGERVREYGDRA 173
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
Q VF+ LPA WD+ ++ E+ +G + + LA + + K + FGFV+F+TH+ A
Sbjct: 174 KQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATD-ENGKSRQFGFVSFETHECAEK 232
Query: 431 CAKSINNAE-------LGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ +++ E +G KA+ +A L ++ K + R
Sbjct: 233 VVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQR 276
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 31/246 (12%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV------ 270
FS G + ++ +N ++KG+ F+ F T E A +A+ +L ++N K+ V
Sbjct: 104 FSAFGNILSCKVNVN-LAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSR 162
Query: 271 --------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG 322
++ +F+ N+ W L E +G +V + L D N G +R
Sbjct: 163 GERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHG--SVMSVALATDEN--GKSRQ 218
Query: 323 FAFLEFSSRSDAMDAFKRLQKRD-----VLFG-----VDRPAKVSFADSFIDPGDEIMAQ 372
F F+ F + A ++L ++ + G +R A++ + Q
Sbjct: 219 FGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQ 278
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEIT--KIELARNMPSAKRKDFGFVTFDTHDAAVT 430
++V L S +D +RE YG IT K+ ++ + K FGFV F + + A
Sbjct: 279 GVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATK 338
Query: 431 CAKSIN 436
+N
Sbjct: 339 AVTEMN 344
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query: 104 PEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN---VGEEEEDDLAEGEMEDVPEEHGQG 160
P E+ + EH V V DE+ E + AE +E + ++ +G
Sbjct: 185 PAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEG 244
Query: 161 EEE-VENAGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFS 218
++ V A ++AER + + ++ ER +R + ++V LD + D LR+ F+
Sbjct: 245 KKIFVGRAQKKAERQAELKVK---FEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFA 301
Query: 219 QVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
G +T ++M + + ++KGF F+ F + E+A +AVTE+ +I K V +Q
Sbjct: 302 PYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRK 361
Query: 277 D 277
D
Sbjct: 362 D 362
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 118/254 (46%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L VF+QV V +R+ + +K++ G+A++ + T + A +A+ L
Sbjct: 39 LYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEML 98
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
++NGK + S +F+ N+ K+ +AL + +G N+ +
Sbjct: 99 NFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFG--NILSCKV 156
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G +RG+ F++F A A K++ G+ K F F+ + +
Sbjct: 157 AVDSS--GQSRGYGFVQFEQEDAAQSAIKQVN------GMLLIEKQVFVGPFVRRQERDL 208
Query: 371 ----AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ V+V L + +D ++ + +G I+ + R+ P K K FGFV F+ D
Sbjct: 209 TGGVTKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRD-PEGKSKCFGFVNFENAD 267
Query: 427 AAVTCAKSINNAEL 440
A + +N ++
Sbjct: 268 DAALAVEELNGKKM 281
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 130/304 (42%), Gaps = 42/304 (13%)
Query: 166 NAGEEAERP-EMVDAEEHD---HHEMFQER----RKRKEFEVFVGGLDKDVVGDDLRKVF 217
N G++A R EM++ + MF R RK +F+ LDK + L F
Sbjct: 86 NTGQDASRALEMLNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTF 145
Query: 218 SQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS---Q 274
+Q G + ++ ++ + +++G+ F++F + A+ A+ ++ ++ KQ V P Q
Sbjct: 146 AQFGNILSCKVAVD-SSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQ 204
Query: 275 DSD---------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
+ D +++ N+ T + LK +G + ++ D EG ++ F F
Sbjct: 205 ERDLTGGVTKFNNVYVKNLGDATTDDDLKRVFGEFG--PISSAVVMRDP--EGKSKCFGF 260
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMA-------------Q 372
+ F + DA A + L + + D+ V A + E+ A Q
Sbjct: 261 VNFENADDAALAVEELNGKKM---DDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQ 317
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
+++ L + D+D++REL +G I ++ R+ P K GFV F T + A
Sbjct: 318 GVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRD-PQGHSKGSGFVAFSTTEEANRAM 376
Query: 433 KSIN 436
+N
Sbjct: 377 TEMN 380
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 189 QERRKRKE----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER++R + +++ LD + D LR++F G + ++M +PQ +KG F+
Sbjct: 307 QERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQ-GHSKGSGFVA 365
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQDSD 277
F+T E+A +A+TE+ ++ K V +Q D
Sbjct: 366 FSTTEEANRAMTEMNGRMVANKPIYVALAQKRD 398
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 130 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 185
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 186 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 238
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ V++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 239 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 297
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 186 EMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ ++ + ++++ LD + + LR FS G ++ V++M + ++KGF
Sbjct: 335 QMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGF 392
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F++ E A +A+TE+ ++ K + +Q
Sbjct: 393 GLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 123/253 (48%), Gaps = 20/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L K FS VG V +R+ + T+++ G+A++ F V A++A+ +
Sbjct: 205 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDTM 264
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 265 NFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFG----KILSS 320
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
S+++G ++G+AF+ F ++S A A + + L R VS S D E+
Sbjct: 321 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN--GTLLKNCR-VFVSRFKSRKDRESELK 376
Query: 370 --MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
++ V++ D+ R++E+ YG +++ + S K K FGFV+F +H+A
Sbjct: 377 NKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKGFGFVSFASHEA 435
Query: 428 AVTCAKSINNAEL 440
A + +N ++
Sbjct: 436 AKNAVEEMNGKDI 448
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 119/269 (44%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L + FS G++ ++M + Q +KG+AF+ F A +A+ E+
Sbjct: 293 VFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 350
Query: 259 KNPVINGKQCGVTPSQ----------------DSDTLFLGNICKTWTKEALKEKLKHYGV 302
++ K C V S+ + +++ N LKE YG
Sbjct: 351 NGTLL--KNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGT 408
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK---- 355
L++ +++ G ++GF F+ F+S A +A + + +D+ L V R K
Sbjct: 409 ----TLSVKVMTDSSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIER 464
Query: 356 -VSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
F E + + V ++ L + D++++R+ ++G I+++++ +
Sbjct: 465 QAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQE--EG 522
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FG + F +H+ A+ +N LG
Sbjct: 523 RSKGFGLICFSSHEEAIKAMTEMNGRILG 551
Score = 46.2 bits (108), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 66/118 (55%), Gaps = 13/118 (11%)
Query: 158 GQGEEEVENAGEEAERPEMVDAEEHDHHEMFQER-RKRKEFEVFVGGLDKDVVGDDLRKV 216
G+ ++++E +AE +M + ++ QER R+ + ++++ LD + + LRK
Sbjct: 456 GRAQKKIE---RQAELKQMFE-------QLRQERFRRCRGVKLYIKNLDDTIDDEKLRKE 505
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F+ G ++ V++M + ++KGF + F++ E+A +A+TE+ ++ K + +Q
Sbjct: 506 FASFGSISRVKVMQ--EEGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQ 561
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +FS +G V+ +R+ + TK + G+A++ F R A+ +L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G N+ +
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFG--NILSCKI 159
Query: 311 VEDSNNEGMNRGFAFLEF---SSRSDAMDAFKRLQKRDVLFGV-------DRPAKVSFAD 360
D G +R F F+ F + +A+DA + + V DR +K+
Sbjct: 160 ATDET--GKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKL---- 213
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE+ + V+V + + ++ ++ NYG IT L R+ K + FGFV
Sbjct: 214 ------DEVKSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERD-NEGKLRGFGFV 266
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H+AA+ + +N+ +
Sbjct: 267 NFEDHNAALKACEELNDTDF 286
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD V L + F+ G +T V++M + + +KGF F+ F+T E+A +A+TE
Sbjct: 326 LFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRD-EAGNSKGFGFVCFSTPEEATKAITEK 384
Query: 259 KNPVINGKQCGVTPSQ 274
++ GK V +Q
Sbjct: 385 NQQIVAGKPLYVAIAQ 400
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 119/256 (46%), Gaps = 23/256 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 105
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG--NVLSCKV 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
D + G ++G+ F+ + + A A K L + V G + R A S +
Sbjct: 164 ATDEH--GRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKL 221
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E+ AQ ++V L +D +L + +G +T + + + + FGFV F+
Sbjct: 222 ---EEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTD-EQGQSRGFGFVNFE 277
Query: 424 THDAAVTCAKSINNAE 439
TH+ A ++++++E
Sbjct: 278 THEEAQKAVETLHDSE 293
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 134/323 (41%), Gaps = 38/323 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G V ++ + + ++KG+ F+ + T E A
Sbjct: 127 RKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAA 185
Query: 252 RQAVTELKNPVINGKQCGV-------------------TPSQDSDTLFLGNICKTWTKEA 292
A+ + ++N K+ V +Q ++ +++ N+ T++
Sbjct: 186 ETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLEEMKAQFTN-IYVKNLDPEVTQDD 244
Query: 293 LKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LF 348
+ + +G NV + D +G +RGF F+ F + +A A + L + LF
Sbjct: 245 FVKLFEQFG--NVTSAVIQTDE--QGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLF 300
Query: 349 GVDRPAKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEIT 401
V R K + S+ E M++ + V ++ L D++R+R+ + +G IT
Sbjct: 301 -VSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSIT 359
Query: 402 KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGK 461
++ R+ K FGFV F + D A +NN +G + R Q+ +
Sbjct: 360 SAKVMRD-EKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLE 418
Query: 462 GKHASRGDFRSGRGTGRATRGSW 484
+ A R R + G +
Sbjct: 419 SQIAQRNQIRMQQAAAAGIPGGY 441
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 30/168 (17%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V+++ HE+ Q+ E HD E G + A+ + E EEE+
Sbjct: 271 FGFVNFET----HEEAQKA--VETLHDSEYHGRKLFVSRAQKKAER--------EEELRK 316
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
+ E+A+ +M K + +++ L+ D+ + LR+ F G +T
Sbjct: 317 SYEQAKVEKM---------------SKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSA 361
Query: 227 RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++M + + +KGF F+ F++ ++A +AV E+ N +I K V+ +Q
Sbjct: 362 KVMRD-EKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQ 408
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 20/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L +VF+ VG V +R+ + T+K+ G+A++ + + + A++A+ L
Sbjct: 29 LYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQEALENL 88
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G + S +L F+ N+ K+ ++L + H+G L+
Sbjct: 89 NYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFG----PILSC 144
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+ G ++ + F+ + + A +A +++ +L G R F +E+
Sbjct: 145 KVAVDASGASKRYGFVHYENEESAREAIEKVN--GMLIGGKRVEVAPFLRKQDRESEEVF 202
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
++V PA WDE+ +R+ L+ YGEIT + L + +K + F FV + + A
Sbjct: 203 TN---LYVRNFPADWDEEALRQFLEKYGEITSMMLKED---SKGRRFAFVNYKEPEVAKE 256
Query: 431 CAKSINNAELGEG 443
++N+ +L E
Sbjct: 257 VVNTLNDLKLEES 269
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 130 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 185
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 186 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 238
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ +++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 239 ELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 297
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 186 EMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ ++ + ++++ LD + + LR FS G ++ V++M + ++KGF
Sbjct: 335 QMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGF 392
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F++ E A +A+TE+ ++ K + +Q
Sbjct: 393 GLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 29/269 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ DV L + FSQ G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAIDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ TL F+ N+ K + L + +G N+ +
Sbjct: 73 NYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFG--NILSCKI 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP----- 365
DS N ++RG+ F+ + ++ A +A ++ G+ K F F+
Sbjct: 131 AVDSKN--VSRGYGFVHYETKEAAHEAIAKVN------GMMLNDKKVFVGEFMSKRERLE 182
Query: 366 --GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
GD+ + K VFV S DE++++E+ +GEIT + S K K FGFV F+
Sbjct: 183 KLGDQ-AKKFKNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAE--SGKSKGFGFVAFE 239
Query: 424 THDAAVTCAKSINNAELGEGDNKAKVRAR 452
+AA +N E+ EG RA+
Sbjct: 240 APEAAEAAVNELNGLEI-EGRKLVVCRAQ 267
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 110/264 (41%), Gaps = 35/264 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK++ L FS G + ++ ++ + ++G+ F+ + T E A +A+ ++
Sbjct: 101 IFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDSKNV-SRGYGFVHYETKEAAHEAIAKV 159
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N K+ V ++ +F+ N + +E LKE +G
Sbjct: 160 NGMMLNDKKVFVGEFMSKRERLEKLGDQAKKFKNVFVKNFGDSLDEEKLKEMFGKHG--E 217
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADS 361
+ ++ +S G ++GF F+ F + A A L ++ V R K A+
Sbjct: 218 ITSCVVMAES---GKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQKK--AER 272
Query: 362 FIDPGDEIMAQVK---------TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
++ AQ +++ L D++R+R YG IT ++ ++
Sbjct: 273 TMELKSRFEAQKMERINRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKD-EKG 331
Query: 413 KRKDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + D A +N
Sbjct: 332 ISKGFGFVCFSSPDEATKAVTEMN 355
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 114/298 (38%), Gaps = 78/298 (26%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
YG V Y+ KE HE + +V VGE E +E
Sbjct: 141 YGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGE-----------------FMSKRERLEK 183
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFE-VFVGGLDKDVVGDDLRKVFSQVGEVTE 225
G++A K+F+ VFV + + L+++F + GE+T
Sbjct: 184 LGDQA-----------------------KKFKNVFVKNFGDSLDEEKLKEMFGKHGEITS 220
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSD-------- 277
+M ++ K+KGF F+ F E A AV EL I G++ V +Q
Sbjct: 221 CVVM--AESGKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQKKAERTMELKS 278
Query: 278 ----------------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
L++ N+ E L+ + YG + +++D +G+++
Sbjct: 279 RFEAQKMERINRYQGVNLYIKNLEDGLDDERLRSEFSTYG--TITSAKVMKDE--KGISK 334
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVD 379
GF F+ FSS +A A + R + V +P V+ A +E AQ+ T F+
Sbjct: 335 GFGFVCFSSPDEATKAVTEMNGRIL---VTKPLYVALAQR----KEERRAQLSTQFLQ 385
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 69 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 128
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 129 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 184
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 185 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 237
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ +++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 238 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 296
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 297 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 340
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 186 EMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ ++ + ++++ LD + + LR FS G ++ V++M + ++KGF
Sbjct: 334 QMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGF 391
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F++ E A +A+TE+ ++ K + +Q
Sbjct: 392 GLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 425
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVA-EGLVDVILYHQPDDKKKNRGFC 132
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 190
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 191 TVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 235
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K+ +++ + FS+V E + +V L P KKN+GF FL + + A QA
Sbjct: 88 LFVGSIPKNKTKENILEEFSKVAEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 147
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVD 303
L + + VT P ++ D LF+ N+ T T+E L++ +G
Sbjct: 148 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 205
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
+E + ++D +AF+ F R A+ A +
Sbjct: 206 KLERVKKLKD---------YAFVHFEDRGAAVKAMDEM 234
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 130 NFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 185
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 186 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 238
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ +++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 239 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 297
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 186 EMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ ++ + ++++ LD + + LR FS G ++ V++M + ++KGF
Sbjct: 335 QMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGF 392
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F++ E A +A+TE+ ++ K + +Q
Sbjct: 393 GLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 130 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 185
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 186 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 238
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ +++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 239 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 297
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 186 EMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ ++ + ++++ LD + + LR FS G ++ V++M + ++KGF
Sbjct: 335 QMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGF 392
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F++ E A +A+TE+ ++ K + +Q
Sbjct: 393 GLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 190
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 191 TVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 235
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K+ +++ + FS+V E + +V L P KKN+GF FL + + A QA
Sbjct: 88 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 147
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVD 303
L + + VT P ++ D LF+ N+ T T+E L++ +G
Sbjct: 148 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 205
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
+E + ++D +AF+ F R A+ A +
Sbjct: 206 KLERVKKLKD---------YAFVHFEDRGAAVKAMDEM 234
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 190
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 191 TVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 235
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K+ +++ + FS+V E + +V L P KKN+GF FL + + A QA
Sbjct: 88 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 147
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVD 303
L + + VT P ++ D LF+ N+ T T+E L++ +G
Sbjct: 148 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 205
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
+E + ++D +AF+ F R A+ A +
Sbjct: 206 KLERVKKLKD---------YAFVHFEDRGAAVKAMDEM 234
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 190
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 191 TVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 235
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K+ +++ + FS+V E + +V L P KKN+GF FL + + A QA
Sbjct: 88 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 147
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVD 303
L + + VT P ++ D LF+ N+ T T+E L++ +G
Sbjct: 148 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 205
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
+E + ++D +AF+ F R A+ A +
Sbjct: 206 KLERVKKLKD---------YAFVHFEDRGAAVKAMDEM 234
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/419 (24%), Positives = 172/419 (41%), Gaps = 68/419 (16%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G V ++ + + ++KG+ F+ + T E A
Sbjct: 127 RKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGRSKGYGFVHYETGEAA 185
Query: 252 RQAVTELKNPVINGKQCGV---------------TPSQDSDTLFLGNICKTWTKEALKEK 296
A+ + ++N K+ V +Q ++ L++ N+ + T++ +E
Sbjct: 186 ETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFTN-LYIKNLDTSVTQDEFEEM 244
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDR 352
+ YG NV + D EG ++GF F+ + +A A L D+ LF V R
Sbjct: 245 FQKYG--NVTSAIVQVDE--EGNSKGFGFVNYEHHEEAQSAVDALHDTDIRGKKLF-VSR 299
Query: 353 PAKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIEL 405
K + S+ E +++ + V ++ L D++++R + +G IT ++
Sbjct: 300 AQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKV 359
Query: 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHA 465
R+ S K FGFV F + D A +NN +G + R Q+ + + A
Sbjct: 360 MRDDKSTS-KGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIA 418
Query: 466 SRGDFRSGRGTGRATRGSWG------LPSPRSLP--GRSARGIGS--RLPPASVKRPVPV 515
R R + G + P P S P GR+ G G LPP
Sbjct: 419 QRNQIRMQQAAAAGIPGGYINGPMYYPPGPGSFPPQGRNMMGYGQPGMLPP--------- 469
Query: 516 RDRRPIMS-MTARARPMPP--PPPRSYDRRAPVPSYPKPGLKREYGRRDEVPPPRSRAP 571
R R P + P+PP PP+SY +P YP+ G R PP +R P
Sbjct: 470 RPRYPAGNGQVPGGMPIPPYGQPPQSYGG---MPGYPRGGAPR---------PPVARGP 516
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 117/257 (45%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG--NVLSCKV 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL-------QKRDVLFGVDRPAKVSFADSFI 363
D + G ++G+ F+ + + A A K + +K V + + R + S
Sbjct: 164 ATDEH--GRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKL---- 217
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
DE+ AQ +++ L S +D E+ + YG +T + + K FGFV ++
Sbjct: 218 ---DEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTS-AIVQVDEEGNSKGFGFVNYE 273
Query: 424 THDAAVTCAKSINNAEL 440
H+ A + ++++ ++
Sbjct: 274 HHEEAQSAVDALHDTDI 290
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 164 VENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV 223
V A ++AER E + ++ +M ++ K + +++ L+ DV + LR F G +
Sbjct: 297 VSRAQKKAEREEELR-RSYEQAKM-EKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTI 354
Query: 224 TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
T ++M + ++ +KGF F+ F++ ++A +AV E+ N +I K V+ +Q
Sbjct: 355 TSCKVMRDDKST-SKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQ 404
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 127/281 (45%), Gaps = 27/281 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +V L + FS G + +R+ + T ++ G+A++ F + A + +T++
Sbjct: 112 LYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDM 171
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ +L F+ N+ K+ ++L + +G N+ +
Sbjct: 172 NLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFG--NILSCKV 229
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+ D N ++G+ F+ F R A A +QK + + D V S D E+
Sbjct: 230 ITDDNG---SKGYGFVHFEHRESAERA---IQKMNGILLNDLKIFVGHFKSRKDRESELG 283
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
AQ + V++ DEDR+ ++ + +G +++ R+ + K FGFV F H+
Sbjct: 284 AQTREFTNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRD-DCGRSKGFGFVNFQKHED 342
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGK 461
A ++N EL G K + + +L R ++ K
Sbjct: 343 AQNAIDNMNGKELNGRQIYAGRAQKKLERQTQLQRHFEQLK 383
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 46/269 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VFV L+K + L FS G + +++ + +KG+ F+ F E A +A+ ++
Sbjct: 200 VFVKNLEKSINNKSLYDAFSSFGNILSCKVITD--DNGSKGYGFVHFEHRESAERAIQKM 257
Query: 259 KNPVINGKQCGVTPSQDSDTLFLGNI---------CKTWTKEALKEKLKHYGVDNVED-- 307
++N + +F+G+ T+E +K++G D ED
Sbjct: 258 NGILLNDLK-----------IFVGHFKSRKDRESELGAQTREFTNVYIKNFGEDMDEDRL 306
Query: 308 ----------LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG--- 349
L++ ++ G ++GF F+ F DA +A K L R + G
Sbjct: 307 SKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQ 366
Query: 350 --VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
++R ++ + + Q +++ L D++ +R+ ++G IT ++
Sbjct: 367 KKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMM 426
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
N + + K FGFV F + A T +N
Sbjct: 427 N--NGRSKGFGFVCFSAPEEATTAVTEMN 453
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 184 HHEMFQERR--KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFA 241
H E ++ R + + +++ LD D+ ++LRK FS G +T ++MMN ++KGF
Sbjct: 378 HFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMN--NGRSKGFG 435
Query: 242 FLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F+ F+ E+A AVTE+ ++ K V +Q
Sbjct: 436 FVCFSAPEEATTAVTEMNGRLVASKPLYVALAQ 468
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 130 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 185
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 186 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 238
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ +++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 239 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 297
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 186 EMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ ++ + ++++ LD + + LR FS G ++ V++M + ++KGF
Sbjct: 335 QMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGF 392
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F++ E A +A+TE+ ++ K + +Q
Sbjct: 393 GLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
>gi|156400838|ref|XP_001638999.1| predicted protein [Nematostella vectensis]
gi|156226124|gb|EDO46936.1| predicted protein [Nematostella vectensis]
Length = 301
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 134/266 (50%), Gaps = 13/266 (4%)
Query: 165 ENAGEEAERPEMVDAEEHDHHEMFQ-ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV 223
+N E P +D E+ E + E K+K+ ++ + GL +V DL+ + S++ +
Sbjct: 6 KNGSVEGSLPPPIDQEKIQLLEKSKAEFSKQKKIKLVITGLPDNV---DLQDLKSKIFQG 62
Query: 224 TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGN 283
+V+ ++ K A + F +EQAR ++ L + K V+P+ LF+GN
Sbjct: 63 YDVKDLVIGHVKNT---ATVVFGGIEQARSVISFLNTCKYHDKTLNVSPAPPESLLFVGN 119
Query: 284 ICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343
+ +T+ + + YG N+E L LV S G ++G+ F+E+++R +AM A ++L
Sbjct: 120 LPFEFTETQFGDLMSPYG--NIERLFLVR-SEVTGDSKGYGFVEYATRENAMQAKQQLLN 176
Query: 344 RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDE-DRVRELLKNYGEITK 402
+ R +V+FA+S + ++ + +T+FVD LP + ++EL G +T
Sbjct: 177 TASKYIGGRILRVAFAESNLLTYADVHS--RTLFVDRLPRDFKNGGLIKELFSQTGNVTF 234
Query: 403 IELARNMPSAKRKDFGFVTFDTHDAA 428
++A N + + F FV + T + A
Sbjct: 235 AQVAINPANGGSRGFAFVDYATAEEA 260
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 40/185 (21%)
Query: 69 GSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNE 128
G++P E + + + Y ERL L +E + + YG V+Y +E + Q++ N
Sbjct: 118 GNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQLLNT 177
Query: 129 EDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMF 188
++ G AE + + H R VD D
Sbjct: 178 ASKYIG---GRILRVAFAESNLLTYADVH--------------SRTLFVDRLPRDFKN-- 218
Query: 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
GGL ++++FSQ G VT ++ +NP ++GFAF+ +AT
Sbjct: 219 -------------GGL--------IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATA 257
Query: 249 EQARQ 253
E+A +
Sbjct: 258 EEAEK 262
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 125/263 (47%), Gaps = 24/263 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +V L + FSQ+G V +R+ + ++++ G+A++ + A+ A+ EL
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEEL 69
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I+ K C + +Q + +F+ N+ K +AL + +G L+
Sbjct: 70 NFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGT----ILSC 125
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
++ +G +RG+ F+ F DA A + + +L +V F+ +
Sbjct: 126 KVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLL------KQVVTVTKFLSRKEREQ 179
Query: 371 AQVKT---VFVDGLPASW-DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+T ++V LP S+ D +++L + +G IT LA++ + K + FGFV F+ +
Sbjct: 180 QGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKD-ENDKSRGFGFVNFENSE 238
Query: 427 AAVTCAKSINNAELGEGDNKAKV 449
AA +++N E+ E D K V
Sbjct: 239 AANAAVEAMNEKEI-ETDRKLFV 260
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 146/333 (43%), Gaps = 44/333 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ L+K++ L FS G + ++ + + +++G+ F+ F E A++A+ +
Sbjct: 98 IFIKNLNKEIDNKALYDTFSAFGTILSCKVAAD-EKGESRGYGFVHFEKEEDAQKAIDTV 156
Query: 259 KNPVINGKQCGVTP-----------SQDSDTLFLGNICKTW-TKEALKEKLKHYGVDNVE 306
++ + VT + +++ N+ ++ T + LK+ + +G +
Sbjct: 157 NGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGT--IT 214
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-----LFGVDRPAKVS---- 357
L +D N++ +RGF F+ F + A A + + ++++ LF V R K
Sbjct: 215 STFLAKDENDK--SRGFGFVNFENSEAANAAVEAMNEKEIETDRKLF-VGRAMKKHERER 271
Query: 358 ----FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413
D DE + +++ LP ED +R+ +G IT +++ + +
Sbjct: 272 ELKRIHDKIRQERDE-KNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTD-NNGD 329
Query: 414 RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSG 473
+ FGFV FD+ D A + ++ + + D K A R + R K + ASR R+
Sbjct: 330 SRGFGFVNFDSADEAAAAIQEMHGSMI---DGKPLYVALALRKVDRQK-QLASR---RTM 382
Query: 474 RGTGRATRGSWGLPSPRSLPGRSARGIGSRLPP 506
G + +P P++ R +G+R PP
Sbjct: 383 PGQMPMGYLPFMMPPPQANMMR----MGNRFPP 411
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 184 HHEMFQER-RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
H ++ QER K K +++ L +DV D LR FS+ G +T +++M + ++GF F
Sbjct: 277 HDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTD-NNGDSRGFGF 335
Query: 243 LRFATVEQARQAVTELKNPVINGK 266
+ F + ++A A+ E+ +I+GK
Sbjct: 336 VNFDSADEAAAAIQEMHGSMIDGK 359
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L VF+QVG+V VR+ + T+++ G+ ++ ++ + A +A+ L
Sbjct: 14 LYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 73
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+N K + S +F+ N+ K +AL + +G N+ +
Sbjct: 74 NFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFG--NILSCKV 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDE-- 368
D++ G ++G+ F++F S A +A +L G+ K + F+ D
Sbjct: 132 ATDAS--GQSKGYGFVQFDSEEAAQNAIDKLN------GMLVNDKQVYVGHFLRKQDRDG 183
Query: 369 --IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ VFV L S ++ ++ + +G IT + R+ K K FGFV F++ D
Sbjct: 184 ALYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRD-ADGKSKCFGFVNFESAD 242
Query: 427 AAVTCAKSINNAEL 440
A +++N ++
Sbjct: 243 DAAKAVEALNGKKI 256
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 123/273 (45%), Gaps = 32/273 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + + ++KG+ F++F + E A
Sbjct: 95 RKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATDA-SGQSKGYGFVQFDSEEAA 153
Query: 252 RQAVTELKNPVINGKQC------------GVTPSQDSDTLFLGNICKTWTKEALKEKLKH 299
+ A+ +L ++N KQ G S + +F+ N+ ++ T E LK
Sbjct: 154 QNAIDKLNGMLVNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAESTTDEELKNIFAE 213
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKV 356
+G + ++ D+ +G ++ F F+ F S DA A + L + + + V + K
Sbjct: 214 HGA--ITSAVVMRDA--DGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKK 269
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F S + D+ Q +++ L S ++++++EL ++G IT ++ R
Sbjct: 270 SERELELKGRFEQSMKETVDKF--QGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMR 327
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
+ PS + GFV F T + A +N L
Sbjct: 328 D-PSGISRGSGFVAFSTPEEASRALAEMNGKML 359
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +++ LD + + L+++FS G +T ++M +P + ++G F+ F+T E+A
Sbjct: 290 KFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDP-SGISRGSGFVAFSTPEEAS 348
Query: 253 QAVTELKNPVINGKQCGVTPSQ 274
+A+ E+ ++ K V +Q
Sbjct: 349 RALAEMNGKMLISKPLYVALAQ 370
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 158 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 216
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 217 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 274
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 275 TVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 319
Score = 46.2 bits (108), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K+ +++ + FS+V E + +V L P KKN+GF FL + + A QA
Sbjct: 172 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 231
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVD 303
L + + VT P ++ D LF+ N+ T T+E L++ +G
Sbjct: 232 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 289
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
+E + ++D +AF+ F R A+ A +
Sbjct: 290 KLERVKKLKD---------YAFVHFEDRGAAVKAMDEM 318
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 118/253 (46%), Gaps = 20/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L +VF+ VG V +R+ + T+K+ G+A++ + + + A A+ L
Sbjct: 29 LYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALESL 88
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G + S +L F+ N+ K+ ++L + H+G L+
Sbjct: 89 NYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFG----PILSC 144
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+ G ++ + F+ + + A +A +++ +L G R F G+E+
Sbjct: 145 KVAVDASGASKRYGFVHYENEESAREAIEKVN--GMLIGGKRVEVAPFLRKQDREGEEVF 202
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
++V PA W+E+ +R+ L+ YGEIT + L + +K + F FV + + A
Sbjct: 203 TN---LYVRNFPADWNEEALRQFLEKYGEITSMMLKED---SKGRRFAFVNYKEPEVAKE 256
Query: 431 CAKSINNAELGEG 443
++N+ +L E
Sbjct: 257 VVNTLNDLKLDES 269
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 21/177 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++FVG + + +D+R +F Q G V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 162 KLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKYATSEEADRAIRA 221
Query: 258 LKNP-VINGKQCGVTPSQ----DSD---------TLFLGNICKTWTKEALKEKLKHYGVD 303
L N + G G+ P Q D + LF+G++ K T++ ++E YG
Sbjct: 222 LHNQHTLPG---GIGPIQVRFADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-- 276
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
+VED+ L+ D + +RG F+++SSR A+ A L + G D+P V FAD
Sbjct: 277 HVEDVYLMRDEMKQ--SRGCGFVKYSSREMALAAINALNGIYKMRGCDQPLTVRFAD 331
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 17/243 (6%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G++ +T ++E ++ + +G NV ++ L++D G +G F+++++ +A A
Sbjct: 163 LFVGSVPRTASEEDIRPLFEQHG--NVIEVALIKDKRT-GQQQGCCFVKYATSEEADRAI 219
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ L + L G P +V FAD + + A +FV L E V E+ YG
Sbjct: 220 RALHNQHTLPGGIGPIQVRFADG---ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 276
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
+ + L R+ + + GFV + + + A+ ++N G ++ + R + P
Sbjct: 277 HVEDVYLMRDE-MKQSRGCGFVKYSSREMALAAINALNGIYKMRGCDQ-PLTVRFADP-- 332
Query: 459 RGKGKHASRGDFRSGRGTGRATRGS-WGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRD 517
K GD R G G G + P PR LP +G R+PP S RP+ +D
Sbjct: 333 ----KRPRPGDSRGGPAFGGPGFGPRFQAPGPR-LPPNFGDAVGDRVPP-SAWRPMSPQD 386
Query: 518 RRP 520
P
Sbjct: 387 MGP 389
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
ER E+++FVG L+K ++ ++FS G V +V LM + + K+++G F+++++ E
Sbjct: 245 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGHVEDVYLMRD-EMKQSRGCGFVKYSSRE 303
Query: 250 QARQAVTELK 259
A A+ L
Sbjct: 304 MALAAINALN 313
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + TK + G+A++ F E R+A+ +L
Sbjct: 40 LYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIDQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G ++ +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKI 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D N G ++GF F+ F A +A D L G+ + + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAAKEAI------DALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+E A ++V + + +++ +E+ +G I L ++ K K FGFV ++
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKD-ADGKLKGFGFVNYEN 268
Query: 425 HDAAVTCAKSINNAEL 440
H+ AV +++N ++L
Sbjct: 269 HEDAVKAVEALNESDL 284
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 30/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G++ ++ + + K+KGF F+ F A
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 179
Query: 252 RQAVTELKNPVINGKQCGVTP--------SQDSDT------LFLGNICKTWTKEALKEKL 297
++A+ L ++NG++ V P SQ +T L++ NI T E +E
Sbjct: 180 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMF 239
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPA 354
+G + +L +D+ +G +GF F+ + + DA+ A + L + D+ V R
Sbjct: 240 AQFGP--IVSASLEKDA--DGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQ 295
Query: 355 KVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + + E MA+ + V FV L S D++++ E YG IT ++ R
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ + K K FGFV F T + A N
Sbjct: 356 S-ENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD V + L + F+ G +T ++M + + K+KGF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRS-ENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 383 NQQIVAGKPLYVAIAQRKDV 402
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V ++ + + +++F+Q G + L + K KGF F+ + E A +AV L
Sbjct: 221 LYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKL-KGFGFVNYENHEDAVKAVEAL 279
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+NG++ V +Q + LF+ N+ + E L+
Sbjct: 280 NESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ YG + E+ G ++GF F+ FS+ +A A ++ V +P
Sbjct: 340 EEFAPYGTITSAKVMRSEN----GKSKGFGFVCFSTPEEATKAITEKNQQIV---AGKPL 392
Query: 355 KVSFA 359
V+ A
Sbjct: 393 YVAIA 397
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 120/250 (48%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L +F+QVG+V VR+ + T+++ G+ ++ ++ + A +A+ L
Sbjct: 33 LYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 92
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+N K + S +F+ N+ KT +AL + +G N+ +
Sbjct: 93 NFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFG--NILSCKV 150
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI--DPGDE 368
D++ G ++G+ F++F S A +A +L G+ K + +F+ D
Sbjct: 151 ATDAS--GQSKGYGFVQFDSEEAAQNAIDKLN------GMLINDKQVYVGNFLRKQERDS 202
Query: 369 IMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
++ +K ++V L S ++ ++ + + +G IT + R+ K K FGFV F+ D
Sbjct: 203 ALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRD-ADGKSKCFGFVNFENVD 261
Query: 427 AAVTCAKSIN 436
A +++N
Sbjct: 262 DAAKAVEALN 271
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 122/266 (45%), Gaps = 27/266 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + + ++KG+ F++F + E A
Sbjct: 114 RKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-ASGQSKGYGFVQFDSEEAA 172
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDT---------LFLGNICKTWTKEALKEKLKH 299
+ A+ +L +IN KQ V Q+ D+ +++ N+ ++ T E LK +
Sbjct: 173 QNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEE 232
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+G + ++ D+ +G ++ F F+ F + DA A + L + D + V + K
Sbjct: 233 HGA--ITSAVVMRDA--DGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKK 288
Query: 357 S-----FADSFIDPGDEI-MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP 410
S F + + Q +++ L S ++++++EL ++G IT ++ + P
Sbjct: 289 SERELELKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHD-P 347
Query: 411 SAKRKDFGFVTFDTHDAAVTCAKSIN 436
S + GFV F T + A +N
Sbjct: 348 SGISRGSGFVAFSTPEEASRALAELN 373
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +++ LD V + L+++FS G +T ++M +P + ++G F+ F+T E+A
Sbjct: 308 KYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDP-SGISRGSGFVAFSTPEEAS 366
Query: 253 QAVTELKNPVINGKQCGVTPSQ 274
+A+ EL ++ K V P+Q
Sbjct: 367 RALAELNGKMVVSKPLYVAPAQ 388
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 116/227 (51%), Gaps = 19/227 (8%)
Query: 237 NKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKE 295
N+G+AF+ F +A+ A+ +L N I NG+ GV S D+ LF+G I KT +E +
Sbjct: 5 NRGYAFVTFGNKLEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILT 64
Query: 296 KLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPA 354
+++ D V D+ + + ++ NRGFAF+E+ S R+ AM K L R L+G
Sbjct: 65 EMRKV-TDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HAI 121
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSA 412
V +A+ ++ ++ MA VK ++V L E+ + + + G + +++
Sbjct: 122 AVDWAEPEVEVDEDTMASVKILYVRNLMLQTTEETIEKEFNSLRPGAVERVK-------- 173
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
K +D+ FV F + A+ ++N G+ + + + L++P+ +
Sbjct: 174 KIRDYAFVHFTQREDAINAMNALN----GKVVDGSPIEVTLAKPVDK 216
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 127/261 (48%), Gaps = 22/261 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ L ++FS +G V +R+ + T+++ G+A++ F+ + A +A+ L
Sbjct: 45 LYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAIDVL 104
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+NGK + SQ T +F+ N+ K AL++ +G N+ +
Sbjct: 105 NFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFG--NIVSAKV 162
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
D +G ++G+ F++F + + A +A +++ G++ KV + F +
Sbjct: 163 ATDG--QGNSKGYGFIQFDTEAAAKEAIEKVN------GMELNDKVVYVGPFQRRAERGT 214
Query: 371 AQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
+ K VFV L ++ +R++ + +G +T + ++++ K K FGFV ++T + A
Sbjct: 215 TETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKD-EDGKSKGFGFVCYETPEDA 273
Query: 429 VTCAKSINNAELGEGDNKAKV 449
+ ++ GE D K V
Sbjct: 274 SKAVEELDGKH-GEEDKKWVV 293
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 29/265 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDKD+ LR F+Q G + ++ + Q +KG+ F++F T A++A+ ++
Sbjct: 133 IFIKNLDKDIDTVALRDTFAQFGNIVSAKVATDGQ-GNSKGYGFIQFDTEAAAKEAIEKV 191
Query: 259 KNPVINGKQCGVTPSQ----------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
+N K V P Q + +F+ N+ T E L++ + +G +
Sbjct: 192 NGMELNDKVVYVGPFQRRAERGTTETKFNNVFVKNLGDEVTDEELRKVFEGFG-----PV 246
Query: 309 TLVEDSNNE-GMNRGFAFLEFSSRSDAMDAFKRL-------QKRDVLFGVDRPA--KVSF 358
T V S +E G ++GF F+ + + DA A + L K+ V+ + A +
Sbjct: 247 TSVMISKDEDGKSKGFGFVCYETPEDASKAVEELDGKHGEEDKKWVVCRAQKKAEREAEL 306
Query: 359 ADSFIDPGDEIMAQV--KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD 416
F E M ++ +++ L D++ +REL K +G IT + R+ R
Sbjct: 307 KAKFEAERRERMEKMAGANLYIKNLEDGADDETLRELFKEFGTITSCRVMRDASGVSRGS 366
Query: 417 FGFVTFDTHDAAVTCAKSINNAELG 441
FV F + + A +N +G
Sbjct: 367 -AFVAFSSPEEATRAVTELNGKMVG 390
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 18/133 (13%)
Query: 146 AEGEMEDVPEEHGQGEEE--VENAGEEAERPEMVDAEEHDHHEMFQERRKRKE----FEV 199
A +E++ +HG+ +++ V A ++AER +AE E ERR+R E +
Sbjct: 273 ASKAVEELDGKHGEEDKKWVVCRAQKKAER----EAELKAKFE--AERRERMEKMAGANL 326
Query: 200 FVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259
++ L+ + LR++F + G +T R+M + + ++G AF+ F++ E+A +AVTEL
Sbjct: 327 YIKNLEDGADDETLRELFKEFGTITSCRVMRDA-SGVSRGSAFVAFSSPEEATRAVTEL- 384
Query: 260 NPVINGKQCGVTP 272
NGK G P
Sbjct: 385 ----NGKMVGAKP 393
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L +F+QVG+V VR+ + T+++ G+ ++ +++ + A +A+ L
Sbjct: 26 LYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALDML 85
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NG + S S +F+ N+ K +AL + +G N+ +
Sbjct: 86 NFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFG--NILSCKV 143
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G ++G+ F++F + A A ++L G+ K + F+ +
Sbjct: 144 ATDSS--GQSKGYGFVQFDNEESAQKAIEKLN------GMLLNDKQVYVGPFLRKQERES 195
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
A KT V+V L + E+ +++ YG IT + R+ K K FGFV F+ D
Sbjct: 196 AIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRD-GDGKTKCFGFVNFENAD 254
Query: 427 AAVTCAKSIN 436
A T +++N
Sbjct: 255 DAATAVEALN 264
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + + ++KG+ F++F E A
Sbjct: 107 RKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATD-SSGQSKGYGFVQFDNEESA 165
Query: 252 RQAVTELKNPVINGKQCGVTP------------SQDSDTLFLGNICKTWTKEALKEKLKH 299
++A+ +L ++N KQ V P + +++ N+ +T T+E LK+
Sbjct: 166 QKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGE 225
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFGV---- 350
YG + ++ D +G + F F+ F + DA A K+ ++ G
Sbjct: 226 YG--TITSAVVMRDG--DGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKK 281
Query: 351 ---DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
+ KV F S + D+ Q +++ L S +DR+++L +G IT ++ R
Sbjct: 282 NERENELKVRFEQSMKEAADKF--QGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMR 339
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ P+ + GFV F T + A +N
Sbjct: 340 D-PNGISRGSGFVAFSTPEEASKALMEMN 367
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 26/139 (18%)
Query: 160 GEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE---------FE------------ 198
G ENA + A E ++ ++ D E F + ++K FE
Sbjct: 246 GFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQG 305
Query: 199 --VFVGGLDKDVVGDD-LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD D +GDD L+++FS G +T ++M +P ++G F+ F+T E+A +A+
Sbjct: 306 ANLYIKNLD-DSIGDDRLKQLFSPFGTITSCKVMRDP-NGISRGSGFVAFSTPEEASKAL 363
Query: 256 TELKNPVINGKQCGVTPSQ 274
E+ ++ K V +Q
Sbjct: 364 MEMNGKMVVSKPLYVALAQ 382
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 85/144 (59%), Gaps = 3/144 (2%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L
Sbjct: 1 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRIL 59
Query: 259 KNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
N I GK GV S D+ LF+G I K KE + +++K + V D+ + + ++
Sbjct: 60 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDK 118
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRL 341
NRGFAF+E+ S A A ++L
Sbjct: 119 TKNRGFAFVEYESHRAAAMARRKL 142
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 33/264 (12%)
Query: 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQA 254
K ++VG LD V L ++FS VG V +R+ + T+++ G+A++ + + +A
Sbjct: 77 KNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKA 136
Query: 255 VTELKNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306
+ EL +I G+ C + SQ + +F+ N+ +AL + +G
Sbjct: 137 LEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSC 196
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGV-----DRPAKV 356
+ L E N ++G+ F+ F+S A A + L + V G DR +K
Sbjct: 197 KVALDEYGN----SKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKF 252
Query: 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD 416
+ + A V++ + ++ L + +G IT L ++ S K +
Sbjct: 253 ----------EAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKD-ESGKPRG 301
Query: 417 FGFVTFDTHDAAVTCAKSINNAEL 440
FGFV F++H+AA +N+ E
Sbjct: 302 FGFVNFESHEAAQKAVDEMNDYEF 325
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V++ +D +V ++ +F + G +T L+ + ++ K +GF F+ F + E A++AV E+
Sbjct: 262 VYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKD-ESGKPRGFGFVNFESHEAAQKAVDEM 320
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ +GK+ V +Q LF+ N+ LK
Sbjct: 321 NDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLK 380
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
+ +G + ++ D N G ++GF F+ +SS +A A + +R +L G +P
Sbjct: 381 TEFSAFGT--ITSAKVMTDEN--GKSKGFGFVCYSSPEEATKAIAEMNQR-MLAG--KPL 433
Query: 355 KVSFA 359
V+ A
Sbjct: 434 YVALA 438
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 185 HEMFQERRKRKE------------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP 232
HE E RKR E +F+ L +V + L+ FS G +T ++M +
Sbjct: 339 HEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTD- 397
Query: 233 QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
+ K+KGF F+ +++ E+A +A+ E+ ++ GK V +Q D
Sbjct: 398 ENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRKDV 443
>gi|326505362|dbj|BAK03068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 601
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 11/192 (5%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++F G + +++ +LR +F Q G V ++ ++ + QT ++KG F+ F + + A A
Sbjct: 37 IKMFCGQIPRNMHEAELRDMFEQFGPVFQLNVLRDKQTGESKGCCFVTFYSRKSALDAQN 96
Query: 257 ELKNP-VINGKQCGV------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
L N +NG + T +++ LF+G + K + ++ + YG +ED T
Sbjct: 97 ALHNLRTLNGSHHPIQMKPADTENRNERKLFVGMVSKNLDEPNIRSLFQSYGT--IEDCT 154
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
++ D+N G +RG AF+ F R A++A K + + + G P V FAD+ D +
Sbjct: 155 VLRDAN--GKSRGCAFVTFQKRQCALNAIKSMHQSQTMEGCSSPLVVKFADTPKDKETKK 212
Query: 370 MAQVKTVFVDGL 381
+ Q T +GL
Sbjct: 213 IQQQYTTHNNGL 224
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
P D+ +F G I + + L++ + +G V L ++ D G ++G F+ F SR
Sbjct: 32 PDPDAIKMFCGQIPRNMHEAELRDMFEQFGP--VFQLNVLRDKQ-TGESKGCCFVTFYSR 88
Query: 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVR 391
A+DA L L G P + + P D + +FV + + DE +R
Sbjct: 89 KSALDAQNALHNLRTLNGSHHPIQ-------MKPADTENRNERKLFVGMVSKNLDEPNIR 141
Query: 392 ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
L ++YG I + R+ + K + FVTF A+ KS++ ++ EG
Sbjct: 142 SLFQSYGTIEDCTVLRDA-NGKSRGCAFVTFQKRQCALNAIKSMHQSQTMEG 192
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 121/277 (43%), Gaps = 36/277 (12%)
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VG LD DV D L K F G + R+ +P T+ G+ ++ F A A+ +
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 261 PVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+INGK + SQ D L F+ N+ K+ L +G N+ +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFG--NILSCKVVC 139
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFADSF 362
D N ++G+A++ F S + A A RL R V G +R A+V D
Sbjct: 140 DDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR- 195
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
A VFV L ++++++EL YG+I +++ R+ S K K FGFV +
Sbjct: 196 --------ATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRD-ASGKSKGFGFVKY 246
Query: 423 DTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
+TH+AA ++ + D K R + ++R
Sbjct: 247 ETHEAAQKAVLELHGKSM---DGKVLYVGRAQKKIER 280
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++ LD+ + + L++ FS G ++ ++MM + + KGF + F++ E+A +AV E+
Sbjct: 304 IYIKNLDESIDDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 259 KNPVINGKQCGVTPSQ 274
++ K VT Q
Sbjct: 362 NGRLVGSKALHVTLGQ 377
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 23/256 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FSQ G+V VR+ + ++++ G+A++ F+ A +A+ L
Sbjct: 48 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEVL 107
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+N K V S S +F+ N+ KT + L E +G L+
Sbjct: 108 NFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGT----ILSC 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+ G ++GF F+++ A +A K L + + D+P F F+ +
Sbjct: 164 KVAMDEAGQSKGFGFVQYEKEEAAQNAIKSL---NGMLINDKPV---FVGPFLRKQERDH 217
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ KT VFV L S ++ + ++ YG IT + M K + FGF+ F+ D
Sbjct: 218 SFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGM-DGKSRCFGFINFENPD 276
Query: 427 AAVTCAKSINNAELGE 442
AA + +N ++ +
Sbjct: 277 AASRAVQELNGKKIND 292
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
R+ +F+ LDK + L + FS G + ++ M+ + ++KGF F+++ E A
Sbjct: 129 RRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMD-EAGQSKGFGFVQYEKEEAA 187
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSD---------TLFLGNICKTWTKEALKEKLKH 299
+ A+ L +IN K V P Q+ D +F+ N+ ++ TKE L +
Sbjct: 188 QNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKVFGE 247
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL---FGVDRPAKV 356
YG + + D G +R F F+ F + A A + L + + + V R K
Sbjct: 248 YGSITSAVVMIGMD----GKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKK 303
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F S D D+ Q +++ L S +D++REL N+G+IT ++ R
Sbjct: 304 SEREMELKRRFEQSLKDAADKY--QGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMR 361
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ + K GFV F T + A +N
Sbjct: 362 DQ-NGLSKGSGFVAFSTREEASQALTEMN 389
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 37/204 (18%)
Query: 180 EEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKG 239
+E DH K K VFV L + +DL KVF + G +T +M+ K++
Sbjct: 213 QERDH-----SFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIG-MDGKSRC 266
Query: 240 FAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSD---------------------- 277
F F+ F + A +AV EL IN K+ V +Q
Sbjct: 267 FGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQ 326
Query: 278 --TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
L+L N+ + + L+E ++G + ++ D N G+++G F+ FS+R +A
Sbjct: 327 GLNLYLKNLDDSIGDDQLRELFSNFG--KITSYKVMRDQN--GLSKGSGFVAFSTREEAS 382
Query: 336 DAFKRLQKRDVLFGVDRPAKVSFA 359
A + + + +P V+FA
Sbjct: 383 QALTEMNGKMI---SGKPLYVAFA 403
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 179 AEEHDHHEMFQERR----------KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRL 228
A++ EM +RR K + +++ LD + D LR++FS G++T ++
Sbjct: 300 AQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKV 359
Query: 229 MMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
M + Q +KG F+ F+T E+A QA+TE+ +I+GK V +Q
Sbjct: 360 MRD-QNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 404
>gi|293333224|ref|NP_001169298.1| uncharacterized protein LOC100383162 [Zea mays]
gi|224028499|gb|ACN33325.1| unknown [Zea mays]
gi|414588978|tpg|DAA39549.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 735
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 188 FQERRKRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
FQ+ R + ++FVG + + +D+R +F + G+V EV L+ + +T + +G F+++A
Sbjct: 112 FQDHDSRSNYVKLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYA 171
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKE 295
T E+A +A+ L N G + +D LF+ ++ K T + ++E
Sbjct: 172 TSEEAERAIRGLHNHYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATPKEIEE 231
Query: 296 KLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355
YG +VED+ ++ DS + +RG F++FSS+ A++A L + G ++P
Sbjct: 232 IFAPYG--HVEDVYIMRDSVKQ--SRGCGFVKFSSKEAAVEAMNALSGTYTMRGCEQPLI 287
Query: 356 VSFAD 360
+ FAD
Sbjct: 288 IRFAD 292
>gi|414588979|tpg|DAA39550.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 708
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 188 FQERRKRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFA 246
FQ+ R + ++FVG + + +D+R +F + G+V EV L+ + +T + +G F+++A
Sbjct: 112 FQDHDSRSNYVKLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYA 171
Query: 247 TVEQARQAVTELKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKE 295
T E+A +A+ L N G + +D LF+ ++ K T + ++E
Sbjct: 172 TSEEAERAIRGLHNHYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATPKEIEE 231
Query: 296 KLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355
YG +VED+ ++ DS + +RG F++FSS+ A++A L + G ++P
Sbjct: 232 IFAPYG--HVEDVYIMRDSVKQ--SRGCGFVKFSSKEAAVEAMNALSGTYTMRGCEQPLI 287
Query: 356 VSFAD 360
+ FAD
Sbjct: 288 IRFAD 292
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 27/256 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ F +E +A+ EL
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ +L F+ N+ +AL + +G + L+
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG----KILSC 197
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG--VDRPAKVSFADSFI 363
+ G +G+ F+ F S A A + L + V G V R + S ++
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEA-- 255
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+ A V++ L E +L +GEIT + L ++ + K + FGFV +
Sbjct: 256 -----LKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYA 309
Query: 424 THDAAVTCAKSINNAE 439
H+ A +N+ E
Sbjct: 310 NHECAQKAVDELNDKE 325
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/398 (21%), Positives = 149/398 (37%), Gaps = 70/398 (17%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VF+ LD + L FS G++ ++ ++ + KG+ F+ F +VE A
Sbjct: 163 RKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESA 221
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ N+ T++ +
Sbjct: 222 NAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLF 281
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+G + L+LV+D N++ RGF F+ +++ A A L ++ L+ V R
Sbjct: 282 GQFG--EITSLSLVKDQNDKP--RGFGFVNYANHECAQKAVDELNDKEYKGKKLY-VGRA 336
Query: 354 AKVSFADSFIDPGDEIMAQVK-------TVFVDGLPASWDEDRVRELLKNYGEITKIELA 406
K + + E M K +F+ L D++R++ +G IT ++
Sbjct: 337 QKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIM 396
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINN---------------AELGEGDNKAKVRA 451
+ K K FGFV + T + A +N E+ +A+++A
Sbjct: 397 TD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQA 455
Query: 452 RLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKR 511
R LQ+ A + G TG G G P P ++ GR
Sbjct: 456 RNQFRLQQQVAAAAGIPAVQYG-ATGPLIYGPGGYPIPAAVNGRG--------------- 499
Query: 512 PVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYP 549
P++ PM P P + P P YP
Sbjct: 500 -------MPMVPGHNGPMPMYPGMPTQFPAGGPAPGYP 530
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 185 HEMFQERRKRKE------------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP 232
HE +E RKR E +F+ L +V + L+ FS G +T ++M +
Sbjct: 340 HEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE 399
Query: 233 QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
Q K+KGF F+ + T E+A +AVTE+ ++ GK V +Q
Sbjct: 400 Q-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 209 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 267
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 268 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 325
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 326 TVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 370
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K+ +++ + FS+V E + +V L P KKN+GF FL + + A QA
Sbjct: 223 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 282
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVD 303
L + + VT P ++ D LF+ N+ T T+E L++ +G
Sbjct: 283 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 340
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
+E + ++D +AF+ F R A+ A +
Sbjct: 341 KLERVKKLKD---------YAFVHFEDRGAAVKAMDEM 369
>gi|340380143|ref|XP_003388583.1| PREDICTED: CUGBP Elav-like family member 4-like [Amphimedon
queenslandica]
Length = 494
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++FVG + K +DLR Q G + E+ ++ + T+++KG AF+ + + E A A E
Sbjct: 60 KLFVGQVPKHFEEEDLRPYLEQYGPIGELLILRHKATRQHKGCAFVTYLSRESAELAQRE 119
Query: 258 LKNPVINGKQ-------CGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
L + VI T ++ +F+G + KT + ++ + +G ++E+LT+
Sbjct: 120 LHDKVILPTMTRPLQVNAAGTKQEELRKVFVGMLSKTIDESHVRSMFERFG--HIEELTV 177
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
++D +G +RG AF++FSSR +A A + +++ G P V +AD+
Sbjct: 178 LKD--KDGYSRGCAFIKFSSRQEAQSAINEMHGSEIMAGASNPLVVKYADT 226
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
+S LF+G + K + +E L+ L+ YG E L L + + ++G AF+ + SR A
Sbjct: 57 ESVKLFVGQVPKHFEEEDLRPYLEQYGPIG-ELLILRHKATRQ--HKGCAFVTYLSRESA 113
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A + L + +L + RP +V+ A + + +++ VFV L + DE VR +
Sbjct: 114 ELAQRELHDKVILPTMTRPLQVNAAGTKQE-------ELRKVFVGMLSKTIDESHVRSMF 166
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV----- 449
+ +G I ++ + ++ R F+ F + A + ++ +E+ G + V
Sbjct: 167 ERFGHIEELTVLKDKDGYSR-GCAFIKFSSRQEAQSAINEMHGSEIMAGASNPLVVKYAD 225
Query: 450 --RARLSRPLQRGKGKHA 465
R R +R +Q+ + A
Sbjct: 226 TERERHARKMQKAMQQFA 243
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 43/299 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
R+ +F+ LDK + L FS G + ++ M+ ++KGF F+++ E A
Sbjct: 6 RRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEESA 64
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSD---------TLFLGNICKTWTKEALKEKLKH 299
+ A+ L +IN K V P Q+ D +F+ N+ ++ TK+ L +
Sbjct: 65 QSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSG 124
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL---FGVDRPAKV 356
YG + + D G +R F F+ F S DA A + L + + + V R K
Sbjct: 125 YGTITSAVVMIGMD----GKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKK 180
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F S D D+ Q +++ L +D++REL N+G+IT ++ R
Sbjct: 181 SEREMDLKRRFEQSMKDAADKYQGQ--NLYLKNLDDGITDDQLRELFSNFGKITSCKIMR 238
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-----------EGDNKAKVRARLSR 455
+ + K GFV+F T + A +N + + D KA ++A+ S+
Sbjct: 239 DQ-NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ 296
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 117 TEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEM 176
T V +G + + V E DD A E ++ E V A +++ER EM
Sbjct: 127 TITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSER-EM 185
Query: 177 VDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK 236
D + M K + +++ LD + D LR++FS G++T ++M + Q
Sbjct: 186 -DLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRD-QNGV 243
Query: 237 NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+KG F+ F+T E+A QA+TE+ +I+GK V +Q
Sbjct: 244 SKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQ 281
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 30/287 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL + + +++ R+ PS K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKEL---FSKTLSVKVMRD-PSGKSKGFGFVSYEKHED 240
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 241 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 287
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 115/267 (43%), Gaps = 35/267 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS------ 212
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 213 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 271
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 272 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 329
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 330 KGFGFVCFSSPEEATKAVTEMNGRIVG 356
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 130 DEHDDENVGEEEED-DLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMF 188
++H+D N EE + G++ V G+ +++VE E + E ++
Sbjct: 236 EKHEDANKAVEEMNGKEISGKIIFV----GRAQKKVERQAELKRKFE----------QLK 281
Query: 189 QERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
QER R + +++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++
Sbjct: 282 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 339
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 340 PEEATKAVTEMNGRIVGSKPLYVALAQ 366
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 118/250 (47%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V L ++F+QVG+V +R+ + T+++ G+A++ + + + A +A+ L
Sbjct: 30 LYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALELL 89
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
V+NG + S + +F+ N+ KT +AL + +G L+
Sbjct: 90 NFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFG----GILSC 145
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
+ G ++G+ F++F A+ A +++ G+ K F F+ +
Sbjct: 146 KVAVDGSGQSKGYGFVQFEQEESALTAIEKVN------GMLLNDKQVFVGPFVRRQERDQ 199
Query: 370 ---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+++ V+V L + ED ++ + YG I+ + R+ K K FGFV F+ D
Sbjct: 200 SGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRD-SDGKSKCFGFVNFEHPD 258
Query: 427 AAVTCAKSIN 436
A +++N
Sbjct: 259 NAAKAVEALN 268
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 128/281 (45%), Gaps = 32/281 (11%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
MF R RK +F+ LDK + L FS G + ++ ++ + ++KG+ F
Sbjct: 102 MFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAVD-GSGQSKGYGF 160
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPS---QDSD---------TLFLGNICKTWTK 290
++F E A A+ ++ ++N KQ V P Q+ D +++ N+ + T+
Sbjct: 161 VQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTE 220
Query: 291 EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL--QKRDVL- 347
+ LK YG + ++ DS +G ++ F F+ F +A A + L +KRD
Sbjct: 221 DDLKNVFGAYG--TISSAVVMRDS--DGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKE 276
Query: 348 FGVDRPAKVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEI 400
+ V R K S F E + + + V ++ L + D++++REL +YG I
Sbjct: 277 WYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTI 336
Query: 401 TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
T ++ R+ P + + GFV F + + A +N +G
Sbjct: 337 TSCKVMRD-PQGQSRGSGFVAFSSPEEATRAVTEMNGKMVG 376
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 189 QERRKRKE----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER++R E +++ LD V + LR++F+ G +T ++M +PQ +++G F+
Sbjct: 298 QERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQ-GQSRGSGFVA 356
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTP 272
F++ E+A +AVTE+ NGK G P
Sbjct: 357 FSSPEEATRAVTEM-----NGKMVGSKP 379
>gi|313236676|emb|CBY11933.1| unnamed protein product [Oikopleura dioica]
Length = 1059
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D++ VF +G + E+RLMM+ KN+GF F+ F ARQA++
Sbjct: 74 EVFVGKIPRDLFEDEIFPVFEMIGPIYELRLMMDFDG-KNRGFCFVMFTERSHARQAISR 132
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K+ KE + +LK V N
Sbjct: 133 LNNFEIRKGRTLGVCSSVDNCRLFVGGIPKSRKKEEIMHELKK--VTN------------ 178
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRL 341
NRGFAF+E+ + A A ++L
Sbjct: 179 --KNRGFAFVEYETHKAAAMARRKL 201
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 52/231 (22%)
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE-QARQAVTELKNPVI--NG 265
+ D++ + ++G +T ++ KG ++ E + R+ +T + P+I NG
Sbjct: 5 LTDNVEQQMERIGRITTIK----------KGLDCIKDCQNEDKIRELITRINYPIIQENG 54
Query: 266 KQ--------CGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
++ CG P++ + +F+G I + ++ + + G + +L L+ D +
Sbjct: 55 QRKLGPPPDYCGEIPTKGCE-VFVGKIPRDLFEDEIFPVFEMIG--PIYELRLMMDF--D 109
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVF 377
G NRGF F+ F+ RS A A RL ++ R + S +D +F
Sbjct: 110 GKNRGFCFVMFTERSHARQAISRLNNFEI-----RKGRTLGVCSSVDNC--------RLF 156
Query: 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428
V G+P S ++ + LK + K + F FV ++TH AA
Sbjct: 157 VGGIPKSRKKEEIMHELKKV-------------TNKNRGFAFVEYETHKAA 194
>gi|34555648|gb|AAQ74972.1| flowering time control protein isoform OsFCA-2 [Oryza sativa Indica
Group]
Length = 649
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++F+G + + DD+R +F + G+V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 182
Query: 258 LKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGVDNVE 306
L N G + +D LF+ ++ K T + ++E YG +VE
Sbjct: 183 LHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG--HVE 240
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
D+ +++D + +RG F++FSSR A+ A L V+ G ++P + FAD
Sbjct: 241 DVYIMKDGMRQ--SRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFAD 292
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 116/258 (44%), Gaps = 26/258 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 112 LYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALEQL 171
Query: 259 KNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+I GK V+ S +F+ N+ + +AL + +G NV
Sbjct: 172 NYSLIKGKPWHVSRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFG--NVLS 229
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSF 362
+ D +G ++G+ F+ + + A A K L + V G P K +
Sbjct: 230 CKVAVDE--QGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSKL- 286
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
DEI AQ ++V L DED R+L + YG IT L + K K FGFV +
Sbjct: 287 ----DEIRAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLD-ADGKSKGFGFVNY 341
Query: 423 DTHDAAVTCAKSINNAEL 440
+TH+ A ++N ++
Sbjct: 342 ETHEMAQKAVDALNEKDI 359
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 143/347 (41%), Gaps = 36/347 (10%)
Query: 182 HDHHEMFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
H M+ +R RK + +F+ LD+ + L F G V ++ ++ Q +
Sbjct: 182 HVSRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVDEQGN-S 240
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGN 283
KG+ F+ + T E A A+ + ++N K+ V P ++ + +++ N
Sbjct: 241 KGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSKLDEIRAQFTNIYVKN 300
Query: 284 ICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343
+ ++ ++ + YG L L D G ++GF F+ + + A A L +
Sbjct: 301 LDTEIDEDEFRKLFEPYGTITSAVLNLDAD----GKSKGFGFVNYETHEMAQKAVDALNE 356
Query: 344 RDV----LFGVDRPAKVSFAD-----SFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRE 392
+D+ LF V R K + D +F E +A+++ V ++ + D++++R
Sbjct: 357 KDINGKKLF-VGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLRA 415
Query: 393 LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ YG IT ++ R+ K FGFV F T D A +NN +G + R
Sbjct: 416 EFEPYGTITSSKIMRD-DKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQR 474
Query: 453 LSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARG 499
Q+ + + + R R + G P PG A+G
Sbjct: 475 RDVRRQQLESQISQRNQIRMQQAAAAGLTGYINGPMYYGAPGFPAQG 521
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 121/266 (45%), Gaps = 51/266 (19%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++G L +V L ++F+ VG V +R+ + T+++ G+A++ + V A +A+ +
Sbjct: 11 LYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALDSM 70
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GK C + SQ +F+ N+ + + L + +G N+ +
Sbjct: 71 NFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFG--NILSCKV 128
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL-----QKRDVLFGV-----DRPAKVSFAD 360
V D G+++G+ ++ + + A A ++L ++V GV +RP + + +
Sbjct: 129 VTDKAT-GLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNRPGQADWTN 187
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD---- 416
VF+ +P W ED++RE + +GE+ SAK K+
Sbjct: 188 ---------------VFIKNIPFEWTEDKLREEFEGFGEVV---------SAKPKEVQGS 223
Query: 417 --FGFVTFDTHDAAVTCAKSINNAEL 440
FGFV F TH+AA K +N+ E
Sbjct: 224 LGFGFVNFATHEAAAAAVKEMNDKEF 249
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V++ E V+E+ ++E ++ GEE L G + +
Sbjct: 226 FGFVNFATHEAAAAAVKEMNDKEFTVTED--GEEVTKVLFVGRAQ-------------KK 270
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
A E E +AE+ D FQ ++V LD V D LR FS +G +T
Sbjct: 271 AERERELRAKYEAEKIDRIAKFQG------VNLYVKNLDDTVTDDVLRDEFSAMGTITSA 324
Query: 227 RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
R+M + +T ++GF F+ ++T E A +AV E+ +I GK V +Q D
Sbjct: 325 RVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKIILGKPIFVALAQRRDV 376
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 127
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 128 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 180
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ V++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 239
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 39.3 bits (90), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++++ LD + + LR FS G ++ V++M + ++KGF + F++ E A +A+TE
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTE 351
Query: 258 LKNPVINGKQCGVTPSQ 274
+ ++ K + +Q
Sbjct: 352 MNGRILGSKPLSIALAQ 368
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 119/254 (46%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V + L +FSQV ++ +R+ + + + G+A++ FA + A A+ L
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + SQ ++ F+ N+ + +AL + +G V +
Sbjct: 97 NFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGT--VLSCKV 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G ++G+ F++F + A +A KRL G+ K + FI +
Sbjct: 155 ALDSS--GQSKGYGFVQFDNEEAAQNAIKRLN------GMLINDKQVYVGLFIRRQEREQ 206
Query: 371 A----QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ V+V L ++ ++ +++L YG IT + +++ + K + FGFV F D
Sbjct: 207 TNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDV-NGKSRCFGFVNFQNPD 265
Query: 427 AAVTCAKSINNAEL 440
+A + +N +
Sbjct: 266 SAAAAVERLNGTTI 279
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 37/284 (13%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
MF +R RK VF+ LD + L F+ G V ++ ++ + ++KG+ F
Sbjct: 109 MFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGF 167
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGV------------TPSQDSDTLFLGNICKTWTK 290
++F E A+ A+ L +IN KQ V S +++ N+ +T+T
Sbjct: 168 VQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTD 227
Query: 291 EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350
E LK+ YG + T+++D N G +R F F+ F + A A +RL +
Sbjct: 228 EDLKKLFGPYGT--ITSATVMKDVN--GKSRCFGFVNFQNPDSAAAAVERLNGTTI--NN 281
Query: 351 DRPAKVSFADSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNY 397
DR V A + E+ A+++ +++ L S+ ++++++L +
Sbjct: 282 DRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEF 341
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
G IT ++ + + + K GFV+F T + A +N +G
Sbjct: 342 GTITSCKVMID-SNGRSKGSGFVSFSTPEEASKALNEMNGKLIG 384
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 189 QERRKRKE----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER R E +++ LD + L+ +FS+ G +T ++M++ ++KG F+
Sbjct: 306 QERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMID-SNGRSKGSGFVS 364
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F+T E+A +A+ E+ +I K V +Q
Sbjct: 365 FSTPEEASKALNEMNGKLIGRKPLYVAVAQ 394
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 39/218 (17%)
Query: 161 EEEVENAGEEAERPEMVDAEEHDHHEMFQERRKR-------KEFEVFVGGLDKDVVGDDL 213
EE +NA + M+ ++ + +F R++R K V+V L + +DL
Sbjct: 173 EEAAQNAIKRLN--GMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDL 230
Query: 214 RKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQCGVTP 272
+K+F G +T +M + K++ F F+ F + A AV L IN + V
Sbjct: 231 KKLFGPYGTITSATVMKDV-NGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGR 289
Query: 273 SQ------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
+Q L+L N+ +++ E LK+ +G +
Sbjct: 290 AQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGT--ITSC 347
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
++ DSN G ++G F+ FS+ +A A + + +
Sbjct: 348 KVMIDSN--GRSKGSGFVSFSTPEEASKALNEMNGKLI 383
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 56/263 (21%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDEL--VFERAGKIHEFRLMME-FSGENRGYAFVTYTTKEEAQLAIRI 118
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 119 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEIKKV-TEGVVDVIVYPSATD 177
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+++ S R+ AM +VK
Sbjct: 178 KTKNRGFAFVKYESHRAAAM------------------------------------RVKV 201
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
+FV L S E+ ++ + G + +++ K +D+ FV F + AV
Sbjct: 202 LFVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVAAMS 253
Query: 434 SINNAELGEGDNKAKVRARLSRP 456
I+ G+ + A + L++P
Sbjct: 254 VIS----GKCIDGASIEVTLAKP 272
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 142/295 (48%), Gaps = 43/295 (14%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K ++ ++VG L DV D L K FS VG V +R+ + T+++ G+A++ F + A+
Sbjct: 105 KYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQ 164
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDN 304
+A+ + I GK + SQ L F+ N+ ++ + L E +G
Sbjct: 165 RALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFG--- 221
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ---KRDVLFGV-------DRPA 354
+ L+ S+++G +RG+AF+ F ++ A A + + +D V DR A
Sbjct: 222 -KILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREA 279
Query: 355 KV-SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413
++ + A+ F + V++ D++R++E+ YG+ +++ + S K
Sbjct: 280 ELRNKANEFTN-----------VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SSGK 327
Query: 414 RKDFGFVTFDTHDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
K FGFV+FD+H+AA + +N N +L G K++ +A L + ++ K
Sbjct: 328 SKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLK 382
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LD+ + L + FS G++ ++M + Q ++G+AF+ F A +A+ E+
Sbjct: 199 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEM 256
Query: 259 KNPVINGKQCGV----------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGV 302
++ K C + + + +++ N E LKE YG
Sbjct: 257 NGALL--KDCRLFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYG- 313
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFA 359
+ L++ +++ G ++GF F+ F S A A + + +D+ L V R K S
Sbjct: 314 ---KTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSER 370
Query: 360 DSFIDPGDEIMAQVK-------TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
+ + E + Q + +++ L + D++++ ++G I+++++ R
Sbjct: 371 QAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMRE--EG 428
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FG + F + + A +N LG
Sbjct: 429 RSKGFGLICFSSPEEATKAMAEMNGRILG 457
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 74/169 (43%), Gaps = 33/169 (19%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V +D E + V+E+ ++ VG ++ + E++ V E+
Sbjct: 331 FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQ---------- 380
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
+ QER +R + ++++ LD + + L + FS G ++
Sbjct: 381 --------------------LKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISR 420
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
V++M + ++KGF + F++ E+A +A+ E+ ++ K + +Q
Sbjct: 421 VKIM--REEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQ 467
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 27/273 (9%)
Query: 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272
L + FS G V +R+ + T+++ G+A++ F A +A+ + VI GK +
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 273 SQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
SQ +L F+ N+ K+ +AL + +G N+ +V D N ++G+A
Sbjct: 62 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYA 116
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGL 381
F+ F ++ +A D K ++K + + DR V S + E+ A+ K V++
Sbjct: 117 FVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNF 173
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL- 440
D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+ A + +N E+
Sbjct: 174 GEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEIS 232
Query: 441 ------GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 233 GKIIFVGRAQKKVERQAELKRKFEQLKQERISR 265
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 76 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 133
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 134 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--- 190
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ L++ + G ++GF F+ + DA A + + +++ + V R K
Sbjct: 191 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 249
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 250 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 307
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 308 KGFGFVCFSSPEEATKAVTEMNGRIVG 334
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 179 DESLKELFSQFGKTLSVKVM-RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 230
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 231 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 267
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 268 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 325
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 326 TEMNGRIVGSKPLYVALAQ 344
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L +FS +G V+ +R+ + TK + G+A++ F E ++A+ +L
Sbjct: 37 LYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQL 96
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL E +G N+ +
Sbjct: 97 NYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFG--NILSSKI 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D G ++GF F+ F S A +A D L G+ + + +
Sbjct: 155 ATDET--GKSKGFGFVHFEHESSAKEAI------DALNGMLLNGQEIYVAPHLTRKERDS 206
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+E A V+V + ++ EL YG + L + K K FGFV F+
Sbjct: 207 QLEETKAHFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKT-EDGKLKGFGFVDFEK 265
Query: 425 HDAAVTCAKSINNAEL 440
H+ A + +N E
Sbjct: 266 HEDAAKAVEELNGTEF 281
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 124/276 (44%), Gaps = 31/276 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L + FS G + ++ + +T K+KGF F+ F A
Sbjct: 118 RKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIATD-ETGKSKGFGFVHFEHESSA 176
Query: 252 RQAVTELKNPVINGKQCGVTP--------SQDSDT------LFLGNICKTWTKEALKEKL 297
++A+ L ++NG++ V P SQ +T +++ NI T E E
Sbjct: 177 KEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELF 236
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL---QKRDVLFGVDRPA 354
YG NV +L + +G +GF F++F DA A + L + +D V R
Sbjct: 237 AKYG--NVLSSSL--EKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQ 292
Query: 355 K-----VSFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + E MA+ + V FV L S D+++++E YG IT + + R
Sbjct: 293 KKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMR 352
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
+ K K FGFV F T + A T A + N ++ G
Sbjct: 353 T-DNGKSKGFGFVCFSTPEEA-TKAITEKNQQIVAG 386
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 155 EEHGQGEEEVENA-GEEAERPEMVDAEEHDHHEMFQERRKRKE------------FEVFV 201
E+H + VE G E + + + +E QE +K+ E +FV
Sbjct: 264 EKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFV 323
Query: 202 GGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261
LD + + L++ F+ G +T VR+M K+KGF F+ F+T E+A +A+TE
Sbjct: 324 KNLDDSIDDEKLKEEFAPYGTITSVRVM-RTDNGKSKGFGFVCFSTPEEATKAITEKNQQ 382
Query: 262 VINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 383 IVAGKPLYVAIAQRKDV 399
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A K++ + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERAIKKM---NGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIKKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 42/206 (20%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ R++R KEF V++ +D+ + L+++F + G V++M + ++ K+K
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSK 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGV------------------TPSQDSDT-- 278
GF F+ F E A++AV E+ +NGKQ V QD T
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 279 ----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
L++ N+ E L+++ +G +T + G ++GF F+ FSS +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFAD 360
A + R V +P V+ A
Sbjct: 347 TKAVTEMNGRIV---ATKPLYVALAQ 369
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|242047590|ref|XP_002461541.1| hypothetical protein SORBIDRAFT_02g004455 [Sorghum bicolor]
gi|241924918|gb|EER98062.1| hypothetical protein SORBIDRAFT_02g004455 [Sorghum bicolor]
Length = 306
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 133 DDENV--GEEEEDDLAEGEMEDVPEEHGQ---GEEEVENAGEEAERPEMVDAEEHDHHEM 187
DDE + GE ++ A G D P HG EE V AGEEA+ + EM
Sbjct: 166 DDEELEPGEIPQEKPAAGCDADPPAAHGSFLGKEEMVAAAGEEAK---------NIAGEM 216
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
RKR EVFVGGL +D +D+R S GE+TEVR++ + T KNKG+ F+ +
Sbjct: 217 SAAERKRMR-EVFVGGLGRDATQEDVRAALSAAGEITEVRIIRDRTTGKNKGYCFVAYRD 275
Query: 248 VEQARQAVTELKNPVINGKQCGVT 271
A +AV E N I GK C V
Sbjct: 276 AAMASKAVAEFGNVKICGKACRVA 299
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 118/272 (43%), Gaps = 38/272 (13%)
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VG LD DV D L K F G + R+ +P T+ G+ ++ F A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 261 PVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+INGK + SQ D L F+ N+ K+ AL +G N+ +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVC 139
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFADSF 362
D N ++G+A++ F S + A A RL R V G +R A+V D
Sbjct: 140 DDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDR- 195
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
A VFV D+++++E+ YG +++ R+ S K K FGFV +
Sbjct: 196 --------ATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRY 246
Query: 423 DTHDAAVTCA-----KSINNAELGEGDNKAKV 449
+TH+AA KSIN L G + K+
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKI 278
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 30/172 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VFV D+ + L+++FS G V+++ + + K+KGF F+R+ T E A++AV +L
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 259 KNPVINGKQCGVTPSQDSDT------------------------LFLGNICKTWTKEALK 294
INGK V +Q +++ N+ +T E LK
Sbjct: 260 HGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E+ +G ++ + G +GF + FSS DA A + R V
Sbjct: 320 EEFSSFG-----SISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNGRTV 366
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V VR+ + T+++ G+A++ + +A+ +L
Sbjct: 76 LYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQL 135
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GK C + SQ +F+ N+ + +AL + +G L+
Sbjct: 136 NYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGT----VLSC 191
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFAD 360
+++ G+++G+ F+ + S A A K L + V G +R +K+
Sbjct: 192 KVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKI---- 247
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE+ + ++V L E+ L +G IT + ++ K FGFV
Sbjct: 248 ------DEMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKD-EEGNSKGFGFV 300
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H+ A + ++N E+
Sbjct: 301 NFENHEDAQRAVEELDNKEI 320
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 117/284 (41%), Gaps = 50/284 (17%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F+ G V ++ + + +KG+ F+ + + E A
Sbjct: 157 RKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSCKVATD-DSGLSKGYGFVHYDSNEAA 215
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSDTLFLG-NICKTWTKEALKEKLKHYGVDNVEDL-- 308
A+ + ++N K+ +F+G +I + + + E H+ V++L
Sbjct: 216 EAAIKAVNGMLLNDKK-----------VFVGQHISRKERQSKIDEMKSHFTNLYVKNLDT 264
Query: 309 ------------------TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350
+ V + EG ++GF F+ F + DA A + L +++
Sbjct: 265 EVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIH--- 321
Query: 351 DRPAKVSFADSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNY 397
+P V A + +E+ Q + +++ L D++++R + +
Sbjct: 322 GKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLRAEFEPF 381
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
G IT ++ R+ K FGFV F + D A +NN +G
Sbjct: 382 GTITSCKVMRD-EKGTSKGFGFVCFSSPDEATRAMSEMNNKIVG 424
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 78/172 (45%), Gaps = 30/172 (17%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V++++ E V+E+ N+E VG ++ + EEE+
Sbjct: 297 FGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKS--------------EREEELRK 342
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
E+A+ +++ K + +++ L+ DV + LR F G +T
Sbjct: 343 QYEQAK---------------YEKAGKYQGSNLYIKNLEDDVDDEKLRAEFEPFGTITSC 387
Query: 227 RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++M + + +KGF F+ F++ ++A +A++E+ N ++ K V +Q D
Sbjct: 388 KVMRD-EKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALAQRKDV 438
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 119/254 (46%), Gaps = 23/254 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ +V + L +FSQV ++ +R+ + + + G+A++ FA + A A+ L
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK + SQ ++ F+ N+ + +AL + +G V +
Sbjct: 97 NFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGT--VLSCKV 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
DS+ G ++G+ F++F + A +A KRL G+ K + FI +
Sbjct: 155 ALDSS--GQSKGYGFVQFDNEEAAQNAIKRLN------GMLINDKQVYVGLFIRRQEREQ 206
Query: 371 A----QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ V+V L ++ ++ +++L YG IT + +++ + K + FGFV F D
Sbjct: 207 TNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDV-NGKSRCFGFVNFQNPD 265
Query: 427 AAVTCAKSINNAEL 440
+A + +N +
Sbjct: 266 SAAAAVERLNGTTI 279
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 37/284 (13%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
MF +R RK VF+ LD + L F+ G V ++ ++ + ++KG+ F
Sbjct: 109 MFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGF 167
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGV------------TPSQDSDTLFLGNICKTWTK 290
++F E A+ A+ L +IN KQ V S +++ N+ +T+T
Sbjct: 168 VQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTD 227
Query: 291 EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350
E LK+ YG + T+++D N G +R F F+ F + A A +RL +
Sbjct: 228 EDLKKLFGPYGT--ITSATVMKDVN--GKSRCFGFVNFQNPDSAAAAVERLNGTTI--NN 281
Query: 351 DRPAKVSFADSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNY 397
DR V A + E+ A+++ +++ L S+ ++++++L +
Sbjct: 282 DRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEF 341
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
G IT ++ + + + K GFV+F T + A +N +G
Sbjct: 342 GTITSCKVMID-SNGRSKGSGFVSFSTPEEASKALNEMNGKLIG 384
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 39/218 (17%)
Query: 161 EEEVENAGEEAERPEMVDAEEHDHHEMFQERRKR-------KEFEVFVGGLDKDVVGDDL 213
EE +NA + M+ ++ + +F R++R K V+V L + +DL
Sbjct: 173 EEAAQNAIKRLN--GMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDL 230
Query: 214 RKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQCGVTP 272
+K+F G +T +M + K++ F F+ F + A AV L IN + V
Sbjct: 231 KKLFGPYGTITSATVMKD-VNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGR 289
Query: 273 SQ------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
+Q L+L N+ +++ E LK+ +G +
Sbjct: 290 AQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGT--ITSC 347
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
++ DSN G ++G F+ FS+ +A A + + +
Sbjct: 348 KVMIDSN--GRSKGSGFVSFSTPEEASKALNEMNGKLI 383
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 189 QERRKRKE----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
QER R E +++ LD + L+ +FS+ G +T ++M++ ++KG F+
Sbjct: 306 QERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMID-SNGRSKGSGFVS 364
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F+T E+A +A+ E+ +I K V +Q
Sbjct: 365 FSTPEEASKALNEMNGKLIGRKPLYVAVAQ 394
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 139/290 (47%), Gaps = 33/290 (11%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K ++ ++VG L DV D L K FS VG V +R+ + T+++ G+A++ F + A+
Sbjct: 105 KYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQ 164
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDN 304
+A+ + +I GK + SQ L F+ N+ K+ + L E +G
Sbjct: 165 KALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG--- 221
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364
+ L+ S+++G +RG+AF+ F +++ A A + + G F F +
Sbjct: 222 -KILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMN------GALLKDCRLFVGRFKN 273
Query: 365 PGD---EIMAQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFG 418
D E+ +V V+V D++R++E+ YG+ +++ + K K FG
Sbjct: 274 RKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SGGKSKGFG 332
Query: 419 FVTFDTHDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
FV+FD+H+AA + +N N +L G K++ +A L + ++ K
Sbjct: 333 FVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLK 382
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 123/290 (42%), Gaps = 35/290 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L + FS G++ ++M + Q ++G+AF+ F A +A+ E+
Sbjct: 199 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQNAADRAIEEM 256
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++ + V + +++ N E LKE YG
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYG--- 313
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADS 361
+ L++ +++ G ++GF F+ F S A A + + +DV L V R K S +
Sbjct: 314 -KTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQA 372
Query: 362 FIDPGDEIMAQVK-------TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
+ E + Q + +++ L + D++++ ++G I+++++ R +
Sbjct: 373 ELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMRE--EGRS 430
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKH 464
K FG + F + + A +N LG +K A RP +R H
Sbjct: 431 KGFGLICFSSPEEATKAMAEMNGRILG---SKPLYIALAQRPXERKNFLH 477
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 33/169 (19%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V +D E + V+E+ ++ G++ V G+ +++ E
Sbjct: 331 FGFVSFDSHEAAKKAVEEMNGKD----------------VNGQLLFV----GRAQKKSE- 369
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTE 225
+AE +M + ++ QER +R + ++++ LD + + L + FS G ++
Sbjct: 370 --RQAELKQMFE-------QLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISR 420
Query: 226 VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
V++M + ++KGF + F++ E+A +A+ E+ ++ K + +Q
Sbjct: 421 VKIM--REEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQ 467
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 119/252 (47%), Gaps = 27/252 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD++V L +F+QVG+V VR+ + T+++ G+ ++ F+ + A +A+ L
Sbjct: 37 LYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVL 96
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+N + + S + +F+ N+ K +AL + +G+ + +
Sbjct: 97 NFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGL--ILSCKI 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
D++ G+++G+ F++F + A +A +L G+ K + F+ D
Sbjct: 155 ATDAS--GLSKGYGFVQFDNEEAAQNAIDKLN------GMLINDKQVYVGHFLRKQDREN 206
Query: 371 AQVKT----VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA--KRKDFGFVTFDT 424
A KT V+V L S ++ EL+ N+GE I A M A K + FGFV F+
Sbjct: 207 ALSKTKFNNVYVKNLSESTTDE---ELMINFGEYGTITSALIMRDADGKSRCFGFVNFEN 263
Query: 425 HDAAVTCAKSIN 436
D A + +N
Sbjct: 264 PDDAAKAVEGLN 275
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + + +KG+ F++F E A
Sbjct: 118 RKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATD-ASGLSKGYGFVQFDNEEAA 176
Query: 252 RQAVTELKNPVINGKQCGV------------TPSQDSDTLFLGNICKTWTKEALKEKLKH 299
+ A+ +L +IN KQ V + +++ N+ ++ T E L
Sbjct: 177 QNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGE 236
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
YG + ++ D+ +G +R F F+ F + DA A + L + D + V + K
Sbjct: 237 YGT--ITSALIMRDA--DGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKK 292
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F S + D+ +++ L + +++++E+ +YG IT ++ R
Sbjct: 293 SEREQELKGRFEQSIKEAADKYPG--LNLYLKNLDDTISDEKLKEMFADYGTITSCKVMR 350
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ P+ + GFV F T + A +N
Sbjct: 351 D-PTGISRGSGFVAFSTPEEATRALGEMN 378
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 34/207 (16%)
Query: 161 EEEVENAGEEAERPEMVDAEEHDHHEMFQERR-----KRKEFEVFVGGLDKDVVGDDLRK 215
EE +NA ++ + D + + H + ++ R K K V+V L + ++L
Sbjct: 173 EEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMI 232
Query: 216 VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275
F + G +T L+M K++ F F+ F + A +AV L + K+ V +Q
Sbjct: 233 NFGEYGTITSA-LIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQK 291
Query: 276 SD------------------------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLV 311
L+L N+ T + E LKE YG + ++
Sbjct: 292 KSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGT--ITSCKVM 349
Query: 312 EDSNNEGMNRGFAFLEFSSRSDAMDAF 338
D G++RG F+ FS+ +A A
Sbjct: 350 RDPT--GISRGSGFVAFSTPEEATRAL 374
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
+++ LD + + L+++F+ G +T ++M +P T ++G F+ F+T E+A +A+
Sbjct: 317 LNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDP-TGISRGSGFVAFSTPEEATRALG 375
Query: 257 ELKNPVINGKQCGVTPSQ 274
E+ + GK V +Q
Sbjct: 376 EMNGKMFAGKPLYVALAQ 393
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G VT VR+ + T+++ G+A++ F +A+ EL
Sbjct: 48 LYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEEL 107
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I + C + SQ + +++ N+ +AL + +G + L+
Sbjct: 108 NYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFG----QILSC 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
++ G +RGF F+ + S A A + L + V G P K SF
Sbjct: 164 KIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVP-KSDRMQSF--- 219
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E VF+ L E EL+ +GE + + L+ N K FGFV + H
Sbjct: 220 -EEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTN-DEGKPTGFGFVDYKEH 277
Query: 426 DAAVTCAKSINNAEL 440
D AV ++ E
Sbjct: 278 DVAVKAIDGLSETEF 292
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 31/202 (15%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
E E +E V+++ + + L N+ E +P +G VDY EHD
Sbjct: 240 EAEFEELVNKFGETSSVHLSTND-EGKPTGFGFVDYK-----------------EHD--- 278
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
V + D L+E E + G+ +++ E A E ++ E E+ + K +
Sbjct: 279 VAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLN---------KYQG 329
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
+++ LD + D LR F+ G +T ++M++ + K+KGF F+ +++ E+A +AVT
Sbjct: 330 VNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVD-EAGKSKGFGFVCYSSPEEATKAVT 388
Query: 257 ELKNPVINGKQCGVTPSQDSDT 278
E+ + ++ GK V +Q D
Sbjct: 389 EMNHRLVAGKPLYVVLAQRKDV 410
>gi|356521753|ref|XP_003529516.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 737
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++FVG + + +D+R +F + G V EV L+ + +T +++G F+++AT E+A QA+
Sbjct: 87 KLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRA 146
Query: 258 LKNP-VINGKQCGVTPSQ----DSD---------TLFLGNICKTWTKEALKEKLKHYGVD 303
L N + G GV P Q D + LF+G++ K T + ++E YG
Sbjct: 147 LHNQHTLPG---GVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYG-- 201
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
VED+ L+ D + +RG F+++S R A+ A L + G ++P V FAD
Sbjct: 202 RVEDVYLMRDEKKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFAD 256
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
ER E+++FVG L+K ++ ++FS+ G V +V LM + + K+++G F++++ +
Sbjct: 170 ERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRD-EKKQSRGCGFVKYSHRD 228
Query: 250 QARQAVTELKNPVINGKQC 268
A A+ L N + + C
Sbjct: 229 MALAAINAL-NGIYTMRGC 246
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 127
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 128 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 180
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ V++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 239
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 39.3 bits (90), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++++ LD + + LR FS G ++ V++M + ++KGF + F++ E A +A+TE
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTE 351
Query: 258 LKNPVINGKQCGVTPSQ 274
+ ++ K + +Q
Sbjct: 352 MNGRILGSKPLSIALAQ 368
>gi|357155243|ref|XP_003577055.1| PREDICTED: flowering time control protein FCA-like [Brachypodium
distachyon]
Length = 749
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++FVG + + DD+R +F+ G+V EV L+ + +T + +G F+++AT E+A +A+
Sbjct: 128 KLFVGSVPRTANEDDVRPLFADHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 187
Query: 258 LKNPVINGKQCGVTPSQDSD-----------TLFLGNICKTWTKEALKEKLKHYGVDNVE 306
L N G + +D LF+ ++ K T + ++E +G +VE
Sbjct: 188 LHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFSPFG--HVE 245
Query: 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
D+ +++D + +RG F++FSS+ A+ A L V+ G ++P V FAD
Sbjct: 246 DVYIMKDGMRQ--SRGCGFVKFSSKEPALAAMNSLSGTYVMRGCEQPLIVRFAD 297
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L VFSQVG V VR+ + T+ + G+A++ F++ A +A+ L
Sbjct: 41 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEML 100
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
INGK + S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 101 NFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFG--NILSCKV 158
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+ + E ++G+ F++F A +A +L G+ K + F+ +
Sbjct: 159 ATEMSGE--SKGYGFVQFELEEAAQNAISKLN------GMLLNDKKVYVGPFVRKQEREN 210
Query: 371 A----QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ V+V L S ED ++E+ +G IT + + R K + FGFV F+ D
Sbjct: 211 VSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMRE-GDGKSRCFGFVNFENPD 269
Query: 427 AAVTCAKSIN 436
A + +N
Sbjct: 270 DAARAVEDLN 279
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 33/275 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ + ++KG+ F++F E A
Sbjct: 122 RKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATE-MSGESKGYGFVQFELEEAA 180
Query: 252 RQAVTELKNPVINGKQCGVTP------------SQDSDTLFLGNICKTWTKEALKEKLKH 299
+ A+++L ++N K+ V P + + +++ N+ ++ T++ LKE
Sbjct: 181 QNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGK 240
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+G ++V +G +R F F+ F + DA A + L + D + V R K
Sbjct: 241 FG----PITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKK 296
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDED-RVRELLKNYGEITKIELA 406
S F + + D+ Q +++ L S D+D +++E+ ++G IT ++
Sbjct: 297 SEREMELKEKFEKNIKEAADK--NQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVM 354
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
R++ + K GFV F + + A ++N +G
Sbjct: 355 RDL-NGVSKGSGFVAFKSAEDASRALVAMNGKMIG 388
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 138/284 (48%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS G V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 138 LYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDTM 197
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 198 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFG----KILSS 253
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + R + + KV F F + D
Sbjct: 254 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGR-----LLKSCKV-FVGRFKNRKDREA 306
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ +++ D++R++++ YG+ +++ + K K FGFV+FD+
Sbjct: 307 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SRGKSKGFGFVSFDS 365
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 366 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 409
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 179 AEEHDHHEMFQERRKR--KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK 236
AE E + R R + +++V LD + + LR FS G + V++M Q +
Sbjct: 399 AELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVM--QQEGQ 456
Query: 237 NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+KGF F+ F+++E A +A+ E+ + K + +Q
Sbjct: 457 SKGFGFICFSSLEDATKAMIEMNGRFLGSKPISIALAQ 494
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 115/255 (45%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V + ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 47 LYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQL 106
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 107 NYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFG--NVLSCKV 164
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVSFADSFIDP 365
D +G ++G+ F+ + + A A K L + V G P K +
Sbjct: 165 ATDE--QGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKL---- 218
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
DE+ AQ +++ L ++ EL YG +T + + + K FGFV +++H
Sbjct: 219 -DEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTS-AIVQVDDEGRSKGFGFVNYESH 276
Query: 426 DAAVTCAKSINNAEL 440
+ A ++++ +L
Sbjct: 277 EEAQAAVDNLHDTDL 291
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 127/317 (40%), Gaps = 30/317 (9%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LD+ + L F G V ++ + Q ++KG+ F+ + T E A
Sbjct: 128 RKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQ-GRSKGYGFVHYETAEAA 186
Query: 252 RQAVTELKNPVINGKQCGVTP--------------SQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V P L++ N+ T+E +E
Sbjct: 187 ETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELF 246
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL---FGVDRPA 354
YG + + ++EG ++GF F+ + S +A A L D+ V R
Sbjct: 247 NRYG----SVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQ 302
Query: 355 KVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + S+ E +++ + V +V L D+D++R + +G IT ++
Sbjct: 303 KKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMS 362
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
+ K FGFV F + D A +NN +G + R Q+ + + A R
Sbjct: 363 D-EKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQR 421
Query: 468 GDFRSGRGTGRATRGSW 484
R + G++
Sbjct: 422 NQIRMQQAAAAGIPGAY 438
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 164 VENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV 223
V A ++AER E + ++ +M ++ K + ++V L+ DV D LR F G +
Sbjct: 298 VTRAQKKAEREEELR-RSYEQAKM-EKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTI 355
Query: 224 TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
T ++M + + +KGF F+ F++ ++A +A+ E+ N +I K V+ +Q
Sbjct: 356 TSCKVMSD-EKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQ 405
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 20/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A + F +E A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ ++ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ +A A ++K + +F DR V S D E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEEAERA---IEKMNGMFLNDRKVFVGRFKSRRDRQAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ L D++R++ L +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL 440
A +N +L
Sbjct: 244 ARKAVDEMNGKDL 256
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 113/272 (41%), Gaps = 42/272 (15%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD+ + L FS G + +++ + +KG+ F+ F T E+A +A+ ++
Sbjct: 101 IFVKNLDRSIDSKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEEAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
+N ++ V +++ +++ N+ + E L+ +G
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQGLFSKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 355 KV--SFADSFID-------PGD-EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIE 404
++ F D P D + Q ++V L D++R+R+ +G IT +
Sbjct: 275 ELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 405 LARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ M + K FGFV F + + A +N
Sbjct: 335 V--TMEGGRSKGFGFVCFSSPEEATKAVTEMN 364
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 52/215 (24%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ RR R KEF V++ L +D+ + L+ +FS+ G V++M + ++ K+K
Sbjct: 173 FKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTD-ESGKSK 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ------------------------ 274
GF F+ F E AR+AV E+ +NGKQ V +Q
Sbjct: 232 GFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVE 291
Query: 275 ----------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
L++ N+ E L+++ +G +T+ G ++GF
Sbjct: 292 QVPQDISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM-----EGGRSKGFG 346
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
F+ FSS +A A + R V +P V+ A
Sbjct: 347 FVCFSSPEEATKAVTEMNGRIV---ATKPLYVALA 378
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 158 GQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE-FEVFVGGLDKDVVGDDLRKV 216
G+ +++VE E + + ++H ++ Q+ R + ++V LD + + LRK
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKE 323
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
FS G +T ++ M + ++KGF F+ F++ E+A +AVTE+ ++ K V +Q
Sbjct: 324 FSPFGTITSAKVTM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 49/255 (19%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R A+ EL
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIR--------------------------ALEEL 95
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 96 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 153
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 154 AQDEN--GNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 207
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + +D R+L +G++T LAR+ K + FGFV F TH
Sbjct: 208 -EEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQ-EGKSRGFGFVNFTTH 265
Query: 426 DAAVTCAKSINNAEL 440
+AA + +NN +
Sbjct: 266 EAAAKAVEDLNNKDF 280
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K V+V + +V D+ R +F+ G+VT L + Q K++GF F+ F T E
Sbjct: 208 EEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARD-QEGKSRGFGFVNFTTHE 266
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A +AV +L N G+ V +Q
Sbjct: 267 AAAKAVEDLNNKDFRGQDLYVGRAQ 291
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 23/252 (9%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++VG L DV L +F+QV +V VR+ + T+++ G+ ++ F+ A +A+
Sbjct: 24 ISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAID 83
Query: 257 ELKNPVINGKQCGVTPS--------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308
L +NGK + S + +F+ N+ K +AL + +G N+
Sbjct: 84 VLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFG--NILSC 141
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDE 368
+ D++ G ++G F++F S A +A +L G+ K F F+ D
Sbjct: 142 KVATDAS--GQSKGHGFVQFESEESAQNAIDKLN------GMLINDKQVFVGPFLRKQDR 193
Query: 369 IMA----QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
A + VFV L S E + + YG IT + R++ K K FGFV F
Sbjct: 194 ESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDV-DGKSKGFGFVNFAN 252
Query: 425 HDAAVTCAKSIN 436
D A +++N
Sbjct: 253 VDDAAKAVEALN 264
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 28/267 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VF+ LDK + L FS G + ++ + + ++KG F++F + E A
Sbjct: 107 RKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDA-SGQSKGHGFVQFESEESA 165
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSDT---------LFLGNICKTWTKEALKEKLKH 299
+ A+ +L +IN KQ V P QD ++ +F+ N+ + T+ L+
Sbjct: 166 QNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGE 225
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKV 356
YG + ++ D +G ++GF F+ F++ DA A + L ++ + V + K
Sbjct: 226 YGA--ITSAVVMRDV--DGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKK 281
Query: 357 SFADSFIDPGDEIMAQVKT-------VFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
S + + E + + +++ L S ++ + EL +G IT ++ R+
Sbjct: 282 SERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRD- 340
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSIN 436
P+ + GFV+F + A +N
Sbjct: 341 PNGISRGSGFVSFSIAEGATRALGEMN 367
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 12/180 (6%)
Query: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
L+NP I+ G PS + +L++G++ L + V V + + D +
Sbjct: 5 LENPTIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQ--VAQVVSVRICRDVATQ 62
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVL-FGVDRPAKVSFADSFIDPGDEIMAQVKTV 376
+ G+ ++ FS+ DA A DVL F + S DP + V
Sbjct: 63 -QSLGYGYVNFSNAHDAAKAI------DVLNFTPLNGKIIRIMYSIRDPSAR-KSGAANV 114
Query: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
F+ L + D + + +G I ++A + S + K GFV F++ ++A +N
Sbjct: 115 FIKNLDKAIDHKALYDTFSAFGNILSCKVATD-ASGQSKGHGFVQFESEESAQNAIDKLN 173
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 10 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 68
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 69 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 126
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 127 TVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 171
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K+ +++ + FS+V E + +V L P KKN+GF FL + + A QA
Sbjct: 24 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 83
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYGVD 303
L + + VT P ++ D LF+ N+ T T+E L++ +G
Sbjct: 84 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG-- 141
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
+E + ++D +AF+ F R A+ A +
Sbjct: 142 KLERVKKLKD---------YAFVHFEDRGAAVKAMDEM 170
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 123/253 (48%), Gaps = 26/253 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +V L ++F+ +G V +R+ + T+K+ G+A++ + V AR+A+ L
Sbjct: 43 LYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRALEAL 102
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
K I GKQ + S +L F+ NI ++ +AL + YG + L+
Sbjct: 103 KYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYG----QILSC 158
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
++ G +RG+ F+ F + ++A A +L + + V R +VS +
Sbjct: 159 KVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERVS-STKLE 217
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
D DE + ++V P +W+E+ ++E +GEIT + + ++ P ++ F F+ +
Sbjct: 218 DGVDE---KFTNLYVRNFPENWNEEILKENFSPFGEITSM-MMKSDPLGRK--FAFINYA 271
Query: 424 THDAAVTCAKSIN 436
+ A +++N
Sbjct: 272 ENSMAKAAIETMN 284
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 27/256 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L +F+Q+G+V VR+ + T+++ G+ ++ ++ + A +A+ L
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+N + + S +F+ N+ K +AL + +G N+ +
Sbjct: 96 NFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFG--NILSCKV 153
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D + G ++G+ F++F + A A ++L G+ K + F+
Sbjct: 154 AVDGS--GQSKGYGFVQFDTEEAAQKAIEKLN------GMLLNDKQVYVGPFLRKQERES 205
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
GD A+ VFV L S +D +++ +G IT + R+ K K FGFV F++
Sbjct: 206 TGDR--AKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFES 262
Query: 425 HDAAVTCAKSINNAEL 440
D A +++N ++
Sbjct: 263 TDDAARAVEALNGKKI 278
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 124/269 (46%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + +F+ LDK + L FS G + ++ ++ + ++KG+ F++F T E A
Sbjct: 117 RKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAA 175
Query: 252 RQAVTELKNPVINGKQCGVTPS------------QDSDTLFLGNICKTWTKEALKEKLKH 299
++A+ +L ++N KQ V P + +F+ N+ ++ T + LK+
Sbjct: 176 QKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGE 235
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFGV---- 350
+G + ++ D +G ++ F F+ F S DA A K++ ++ G
Sbjct: 236 FG--TITSAVVMRDG--DGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKK 291
Query: 351 ---DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
+ K+ F S + D+ Q ++V L S +++++EL +YG IT ++ R
Sbjct: 292 SEREHELKIKFEQSMKEAADKY--QGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMR 349
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ P+ + GFV F T + A +N
Sbjct: 350 D-PNGVSRGSGFVAFSTPEEASRALLEMN 377
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 181 EHDHHEMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK 235
EH+ F++ K ++V LD + + L+++FS G +T ++M +P
Sbjct: 295 EHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDP-NG 353
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
++G F+ F+T E+A +A+ E+ ++ K VT +Q
Sbjct: 354 VSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQ 392
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 118/272 (43%), Gaps = 38/272 (13%)
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VG LD DV D L K F G + R+ +P T+ G+ ++ F A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 261 PVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+INGK + SQ D L F+ N+ K+ AL +G N+ +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVC 139
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFADSF 362
D N ++G+A++ F S + A A RL R V G +R A+V D
Sbjct: 140 DDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR- 195
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
A VFV D+++++E+ YG +++ R+ S K K FGFV +
Sbjct: 196 --------ATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRY 246
Query: 423 DTHDAAVTCA-----KSINNAELGEGDNKAKV 449
+TH+AA KSIN L G + K+
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKI 278
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 31/180 (17%)
Query: 192 RKRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQ 250
R R F VFV D+ + L+++FS G V+++ + + K+KGF F+R+ T E
Sbjct: 193 RDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251
Query: 251 ARQAVTELKNPVINGKQCGVTPSQDSDT------------------------LFLGNICK 286
A++AV +L INGK V +Q +++ N+ +
Sbjct: 252 AQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDE 311
Query: 287 TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
T E LKE+ +G ++ + G +GF + FSS DA A + R V
Sbjct: 312 TIDDEKLKEEFSSFG-----SISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNGRTV 366
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 24/235 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++ G L DV L +VF+ +G V +R+ + T+K+ G+A++ F V A +A+ L
Sbjct: 51 LYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTL 110
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
ING+ C + S L ++ N+ + +AL + +G + L
Sbjct: 111 NYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL 170
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF---IDPGD 367
D G +RGF F+ F S A A +L G+ K + F D D
Sbjct: 171 TPD----GKSRGFGFVHFESDESAEAAIAKLN------GMQIGEKTVYVAQFKKTADRSD 220
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
V++ +P SW E+++RE +GEIT + + P +R F FV F
Sbjct: 221 GSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTD-PKGRR--FAFVNF 272
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 269 GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
G P+Q +L+ G++ + L E G+ V + + DS + G+A++ F
Sbjct: 41 GGVPTQQFASLYAGDLAPDVNEAVLYEVFN--GIGPVASIRVCRDSVTR-KSLGYAYINF 97
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDED 388
+ +DA A L + RP ++ + S DP + V+V L + D
Sbjct: 98 HNVADAERALDTLNYSPI---NGRPCRLMW--SHRDPALR-RSGAGNVYVKNLDRNIDNK 151
Query: 389 RVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+ + +G I ++A P K + FGFV F++ ++A +N ++GE
Sbjct: 152 ALYDTFSLFGNILSCKVALT-PDGKSRGFGFVHFESDESAEAAIAKLNGMQIGE 204
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 37/259 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L ++FS VG V +R+ + T+++ G++++ F + A +A+ +
Sbjct: 41 LYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDTM 100
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ +L F+ N+ + + L + +G N+ +
Sbjct: 101 NFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLFG--NILSCKV 158
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL----------QKRDVLFGVDRPAKVSFAD 360
V D G++ G+ ++ + + A A ++L Q + DRP S+ +
Sbjct: 159 VTDREG-GVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMRRNDRPDIDSWTN 217
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+I +P WD+ R+ + +GE+ ++R + + FGF+
Sbjct: 218 CYI---------------KNVPYEWDDARLNQEFAQFGEVLSATVSRE-DTNQTLGFGFI 261
Query: 421 TFDTHDAAVTCAKSINNAE 439
F H++AV +++N E
Sbjct: 262 NFAEHESAVAAVEALNGKE 280
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 178 DAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
+AE+ D FQ ++V LD V D LR F+ +G +T R+M + + ++
Sbjct: 314 EAEKMDRISKFQG------VNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRS 367
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ ++T E++ +AV E+ +I K V +Q
Sbjct: 368 RGFGFVCYSTPEESTRAVNEMNGKLIANKPIFVALAQ 404
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 25/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L + FSQ G+V VR+ + T+++ G+ ++ +AT + A +A+ EL
Sbjct: 41 LYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 100
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NG+ V S +L F+ N+ K+ +AL E +G L+
Sbjct: 101 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFG----PILSC 156
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI-----DP 365
+ G ++G+ F+++ + A A +L G+ K + F+ DP
Sbjct: 157 KVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLN------GMLLNDKQVYVGPFVHKLQRDP 210
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
E + V+V L S ++ + ++ +G T + R+ K K FGFV F+
Sbjct: 211 SGE-KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENS 268
Query: 426 DAAVTCAKSIN 436
D A ++N
Sbjct: 269 DDAARAVDALN 279
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 43/299 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L + FS G + ++ ++P + ++KG+ F+++ T E A
Sbjct: 122 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAA 180
Query: 252 RQAVTELKNPVINGKQCGVTPSQDS------------DTLFLGNICKTWTKEALKEKLKH 299
++A+ +L ++N KQ V P +++ N+ ++ + E L +
Sbjct: 181 QRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGE 240
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+GV + V + EG ++GF F+ F + DA A L + D + V + K
Sbjct: 241 FGVTT----SCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK 296
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F S + D+ +Q ++V L S +D++RE +G IT ++ R
Sbjct: 297 SERETELKQKFEQSLKEAADK--SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR 354
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-----------EGDNKAKVRARLSR 455
+ P+ + GFV F T + A +N + + D KA+++A+ S+
Sbjct: 355 D-PTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQ 412
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 158 GQGEEEVENAGEEAERPEMVDAEEHDHHEMF---------QERRKRKEFE---------- 198
G G EN+ + A + ++ + D E F +E +++FE
Sbjct: 259 GFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKS 318
Query: 199 ----VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQA 254
++V LD+ V D LR+ F+ G +T ++M +P T ++G F+ F+T E+A +A
Sbjct: 319 QGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-TGVSRGSGFVAFSTPEEASRA 377
Query: 255 VTELKNPVINGKQCGVTPSQ 274
+TE+ +I K V +Q
Sbjct: 378 ITEMNGKMIVTKPLYVALAQ 397
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333
Q + +L++G++ T T L E G V + + D + G+ ++ +++ D
Sbjct: 36 QGTTSLYVGDLDATVTDSQLFEAFSQAG--QVVSVRVCRDMTTR-RSLGYGYVNYATPQD 92
Query: 334 AMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVREL 393
A A L + + R +V + S DP + V +F+ L S D + E
Sbjct: 93 ASRALNEL---NFMALNGRAIRVMY--SVRDPSLR-KSGVGNIFIKNLDKSIDHKALHET 146
Query: 394 LKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+G I ++A + PS + K +GFV +DT +AA +N L +
Sbjct: 147 FSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLND 194
>gi|356565014|ref|XP_003550740.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 733
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++FVG + + +D+R +F + G V EV L+ + +T +++G F+++AT E+A QA+
Sbjct: 87 KLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRA 146
Query: 258 LKNP-VINGKQCGVTPSQ----DSD---------TLFLGNICKTWTKEALKEKLKHYGVD 303
L N + G GV P Q D + LF+G++ K T + ++E YG
Sbjct: 147 LHNQHTLPG---GVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYG-- 201
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
VED+ L+ D + +RG F+++S R A+ A L + G ++P V FAD
Sbjct: 202 RVEDVYLMRDEKKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFAD 256
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 106/235 (45%), Gaps = 15/235 (6%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G++ +T ++E ++ + +G NV ++ L++D G ++G F+++++ +A A
Sbjct: 88 LFVGSVPRTASEEDIRPLFEEHG--NVIEVALIKDKKT-GQHQGCCFIKYATSEEADQAI 144
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ L + L G P +V +AD + + A +FV L V E+ YG
Sbjct: 145 RALHNQHTLPGGVGPIQVRYADG---ERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYG 201
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
+ + L R+ + + GFV + D A+ ++N G + + R + P +
Sbjct: 202 RVEDVYLMRDE-KKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLI-VRFADPKR 259
Query: 459 RGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPV 513
+G SRG G G G + P R P IG R+PP + RP+
Sbjct: 260 PRQGD--SRGLAFGGPGFGP----RFDAPGTRH-PSNITDPIGDRMPPPNAWRPM 307
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
ER E+++FVG L+K ++ ++FS+ G V +V LM + + K+++G F++++ +
Sbjct: 170 ERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRD-EKKQSRGCGFVKYSHRD 228
Query: 250 QARQAVTELKNPVINGKQC 268
A A+ L N + + C
Sbjct: 229 MALAAINAL-NGIYTMRGC 246
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 117/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD +V L +F+QVG+V VR+ + T+++ G+ ++ ++ + A +A+ L
Sbjct: 31 LYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 90
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+NGK V S + +F+ N+ K +AL + +G ++ +
Sbjct: 91 NFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFG--SILSCKV 148
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP----G 366
DS+ G ++G+ F++F + A+ A ++L G+ K + F+ G
Sbjct: 149 ALDSS--GQSKGYGFVQFDNEESALKAIEKLN------GMLLNDKQVYVGPFLRKQERDG 200
Query: 367 DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
++ VFV L + E+ + + +G +T I + R+ K + FGFV F+ D
Sbjct: 201 VVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRD-ADGKSRCFGFVNFENAD 259
Query: 427 AAVTCAKSIN 436
A ++N
Sbjct: 260 DAARAVDTLN 269
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 121/269 (44%), Gaps = 32/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L FS G + ++ ++ + ++KG+ F++F E A
Sbjct: 112 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALD-SSGQSKGYGFVQFDNEESA 170
Query: 252 RQAVTELKNPVINGKQC------------GVTPSQDSDTLFLGNICKTWTKEALKEKLKH 299
+A+ +L ++N KQ GV + +F+ N+ +T T+E L +
Sbjct: 171 LKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSE 230
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+G + + ++ D+ +G +R F F+ F + DA A L + D + V + K
Sbjct: 231 FG--TLTSIVVMRDA--DGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKK 286
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F + + D+ Q +++ L S +D+++EL +G IT ++ R
Sbjct: 287 SEREVELKHRFEQTMKEAADKY--QGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMR 344
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ P+ + GFV F T D A +N
Sbjct: 345 D-PNGISRGSGFVAFSTPDEASRALVEMN 372
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K K VFV L + +DL K FS+ G +T + ++M K++ F F+ F + A
Sbjct: 204 KSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSI-VVMRDADGKSRCFGFVNFENADDAA 262
Query: 253 QAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTW 288
+AV L +++ K+ V +Q L++ N+ +
Sbjct: 263 RAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSI 322
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348
+ LKE +G + ++ D N G++RG F+ FS+ +A A + + V
Sbjct: 323 GDDKLKELFAPFG--TITSCKVMRDPN--GISRGSGFVAFSTPDEASRALVEMNGKMV-- 376
Query: 349 GVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPAS 384
V +P V+ A D + AQ + +PAS
Sbjct: 377 -VSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPAS 411
>gi|82541152|ref|XP_724838.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479626|gb|EAA16403.1| FCA gamma-related [Plasmodium yoelii yoelii]
Length = 387
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
++F+G + K+ + LR +F + G V EV ++ + T +K AF++ A++ +A A+
Sbjct: 86 IKLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNIHKSSAFVKMASISEADNAIR 145
Query: 257 ELKNPVINGKQCG-------------------VTPSQDSDTLFLGNICKTWTKEALKEKL 297
L N +Q G V D LF+G++ K T+E++K+
Sbjct: 146 SLNNQRTLDQQLGSLQVKYASGEVMKLGFPQNVESGVDQAKLFIGSLPKNITEESIKDMF 205
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
YG +VE++ +++D N+ G+ +G +F++F+ + A+ A L + L G +RP +V
Sbjct: 206 SVYG--SVEEVFIMKD-NSTGLGKGCSFVKFAYKEQALYAISSLNGKKTLEGCNRPVEVR 262
Query: 358 FAD 360
FA+
Sbjct: 263 FAE 265
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
S LF+G + K + +E L+ + +G+ V ++ ++ D +++ AF++ +S S+A
Sbjct: 85 SIKLFIGRVPKNYEEEQLRPIFEEFGI--VNEVVIIRDKIT-NIHKSSAFVKMASISEAD 141
Query: 336 DAFKRLQKRDVLFGVDRPAKVSFADS------FIDPGDEIMAQVKTVFVDGLPASWDEDR 389
+A + L + L +V +A F + + Q K +F+ LP + E+
Sbjct: 142 NAIRSLNNQRTLDQQLGSLQVKYASGEVMKLGFPQNVESGVDQAK-LFIGSLPKNITEES 200
Query: 390 VRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
++++ YG + ++ + ++ + K FV F + A+ S+N + EG N+ V
Sbjct: 201 IKDMFSVYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAISSLNGKKTLEGCNRP-V 259
Query: 450 RARLSRP 456
R + P
Sbjct: 260 EVRFAEP 266
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI G+ + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++++REL YG I + + + K + FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N E+ G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTR 290
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E L+E YG N
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYG--N 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADS 361
+ ++ D N G +RGF F+ F DA A + +++ L V R K +
Sbjct: 217 AMSIRVMTDEN--GKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQT 274
Query: 362 FIDPGDEIMAQVK-------TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
+ E M Q + ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
+ H+D ++ D++ EM G+ +++VE E + E +M Q
Sbjct: 239 ERHED---AQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFE----------QMKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+ F++
Sbjct: 286 DRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 46.6 bits (109), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 42/206 (20%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ R++R KEF V++ ++ + LR++FS+ G +R+M + + K++
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSR 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGV------------------TPSQDSDT-- 278
GF F+ F E A++AV E+ +NGK V QD T
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRY 291
Query: 279 ----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
L++ N+ E L+++ +G +T + G ++GF F+ FSS +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFAD 360
A + R V +P V+ A
Sbjct: 347 TKAVTEMNGRIV---ATKPLYVALAQ 369
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 175 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 233
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 234 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 291
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ E+ + + +G++ +++ K KD+ FV F+ AAV +N
Sbjct: 292 TVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMN 336
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 28/159 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ-TKKNKGFAFLRFATVEQARQAVT 256
+FVG + K+ +++ + FS+V E + +V L P KKN+GF FL + + A QA
Sbjct: 189 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 248
Query: 257 ELKNPVINGKQCGVT-----PSQDSD--------TLFLGNICKTWTKEALKEKLKHYG-V 302
L + + VT P ++ D LF+ N+ T T+E L++ +G +
Sbjct: 249 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKL 308
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341
+ V+ L + +AF+ F R A+ A +
Sbjct: 309 ERVKKL------------KDYAFVHFEDRGAAVKAMDEM 335
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 132/276 (47%), Gaps = 46/276 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L K FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 12 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 259 KNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG 318
V+NGK + SQ ++A L+ G+ NV S+++G
Sbjct: 72 NFDVVNGKSIRLMWSQ---------------RDAY---LRRSGIGNVM-------SDDQG 106
Query: 319 MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD---EI---MAQ 372
++G+AF+ F ++S A A + + R + + KV F F + D E+ +
Sbjct: 107 -SKGYAFVHFQNQSAADRAIEEMNGRQL-----KDCKV-FVGRFKNRKDREAELRNKAGE 159
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
V++ D+++++E+ YG +++ + S K K FGFV+FD H+AA
Sbjct: 160 FTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTD-SSGKSKGFGFVSFDNHEAAKKAV 218
Query: 433 KSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
K +N N +L G K + +A L + ++ K
Sbjct: 219 KEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLK 254
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 186 EMFQERRKRKE-----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ +K + ++++ LD + + LRK FS G ++ V++M + ++KGF
Sbjct: 248 QMFEQLKKERIHGCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVM--QEGGQSKGF 305
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F+++E+A +A+TE+ ++ K + +
Sbjct: 306 GLICFSSLEEATKAMTEMNGHILGSKPLSIALAH 339
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 117/272 (43%), Gaps = 38/272 (13%)
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VG LD DV D L K F G + R+ +P T+ G+ ++ F A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 261 PVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+INGK + SQ D L F+ N+ K AL +G N+ +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFG--NILSCKVVC 139
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFADSF 362
D N ++G+A++ F S + A A RL R V G +R A+V D
Sbjct: 140 DDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR- 195
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
A VFV D+++++E+ YG +++ R+ S K K FGFV +
Sbjct: 196 --------ATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRY 246
Query: 423 DTHDAAVTCA-----KSINNAELGEGDNKAKV 449
+TH+AA KSIN L G + K+
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKI 278
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++ LD+ + + L++ FS G ++ ++M+ + + KGF + F++ E+A +AV E+
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMV--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 259 KNPVINGKQCGVTPSQ 274
+ K VT Q
Sbjct: 362 NGRTVGSKPLHVTLGQ 377
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 121/259 (46%), Gaps = 25/259 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD D+ L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 14 LYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 73
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I GK + SQ +L F+ N+ K+ +A+ + +G N+ +
Sbjct: 74 NFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFG--NILSCKV 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
+D G ++GF F+ F ++ A +A ++ G+ K + F+ + +
Sbjct: 132 AQDET--GSSKGFGFVHFETQEAADEAMAKVN------GMMLNGKKVYVGRFVPRSERLA 183
Query: 371 A------QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
A + ++V WD+D++R+ + YG++ ++ + + FGFV+++
Sbjct: 184 AMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTD-DMGHSRGFGFVSYEE 242
Query: 425 HDAAVTCAKSINNAELGEG 443
D+A + +N+ E+ +G
Sbjct: 243 PDSAGKACEEMNDMEVDDG 261
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 113/263 (42%), Gaps = 32/263 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + + FS G + ++ + +T +KGF F+ F T E A +A+ ++
Sbjct: 102 VFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQD-ETGSSKGFGFVHFETQEAADEAMAKV 160
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++NGK+ V + +++ N W + L++ + YG
Sbjct: 161 NGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYG--K 218
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG----VDRPAKVSFAD 360
V ++ D + G +RGF F+ + A A + + +V G V R K +
Sbjct: 219 VVSAKVMTD--DMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQ 276
Query: 361 SFIDPGDEIMAQVKT-------VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413
+ + E + Q + ++V L ++ DE+ +R+ +G IT ++ + +
Sbjct: 277 AELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTE--NGR 334
Query: 414 RKDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 335 SKGFGFVCFSSPEEATKAVTEMN 357
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 137 VGEEEEDDLAEG--EMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKR 194
V EE D + EM D+ + G+ V A ++AER + A+ ++ QER +R
Sbjct: 238 VSYEEPDSAGKACEEMNDMEVDDGR-RIYVGRAQKKAERQAELKAK---FEKIKQERIQR 293
Query: 195 KE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQ 253
+ ++V LD + + LRK FSQ G +T ++M + ++KGF F+ F++ E+A +
Sbjct: 294 YQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMT--ENGRSKGFGFVCFSSPEEATK 351
Query: 254 AVTELKNPVINGKQCGVTPSQ 274
AVTE+ ++ K V +Q
Sbjct: 352 AVTEMNGRIVVSKPLYVALAQ 372
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 117/272 (43%), Gaps = 38/272 (13%)
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VG LD DV D L K F G + R+ +P T+ G+ ++ F A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 261 PVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+INGK + SQ D L F+ N+ K AL +G N+ +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFG--NILSCKVVC 139
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFADSF 362
D N ++G+A++ F S + A A RL R V G +R A+V D
Sbjct: 140 DDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR- 195
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
A VFV D+++++E+ YG +++ R+ S K K FGFV +
Sbjct: 196 --------ATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRY 246
Query: 423 DTHDAAVTCA-----KSINNAELGEGDNKAKV 449
+TH+AA KSIN L G + K+
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKI 278
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++ LD+ + + L++ FS G ++ ++M+ + + KGF + F++ E+A +AV E+
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMV--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 259 KNPVINGKQCGVTPSQ 274
+ K VT Q
Sbjct: 362 NGRTVGSKPLHVTLGQ 377
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 122/272 (44%), Gaps = 25/272 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L + FS +G V +R+ + T+++ G+A++ F + A A+ L
Sbjct: 34 LYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAIDVL 93
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VINGK V SQ +F+ N+ K +AL + +G + +
Sbjct: 94 NFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAM 153
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF---IDPGD 367
++ G ++G+ F++F + A A D + G++ K + F D
Sbjct: 154 ----DSAGNSKGYGFVQFETAEAAQAAI------DNVNGMELNDKQVYVGPFQRRADRST 203
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
+ A+ V+V L + ++++RE +G +T + ++ K K FGFV F++ +
Sbjct: 204 QGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKD-EEGKSKGFGFVCFESPEG 262
Query: 428 AVTCAKSINNAELGEGDNKAKVRARLSRPLQR 459
A A ++ N + D K V R + +R
Sbjct: 263 A---ASAVENLDGYTEDEKTWVVCRAQKKAER 291
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 10/87 (11%)
Query: 190 ERRKRKE----FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRF 245
ERR+R E +++ L++ + LR++F++ G +T R+M + + ++G AF+ F
Sbjct: 302 ERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDA-SGASRGSAFVAF 360
Query: 246 ATVEQARQAVTELKNPVINGKQCGVTP 272
++ ++A +AVTE+ NGK G P
Sbjct: 361 SSPDEATRAVTEM-----NGKMVGAKP 382
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 115/257 (44%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 44 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 103
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 104 NYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFG--NVLSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG--VDRPAKVSFADSFI 363
D + G ++G+ F+ + + A +A K L + V G + R + S
Sbjct: 162 ATDEH--GRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKL---- 215
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
DE+ AQ +++ L ++ EL YG +T +A + K K FGFV ++
Sbjct: 216 ---DEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATD-EEGKSKGFGFVNYE 271
Query: 424 THDAAVTCAKSINNAEL 440
H+ A +++ +L
Sbjct: 272 RHEEAQRAVDELHDTDL 288
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 129/318 (40%), Gaps = 32/318 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD+ + L F G V ++ + + ++KG+ F+ + T E A
Sbjct: 125 RKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAA 183
Query: 252 RQAVTELKNPVINGKQCGV---------------TPSQDSDTLFLGNICKTWTKEALKEK 296
A+ + ++N K+ V +Q ++ L++ N+ T+E E
Sbjct: 184 DNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQFTN-LYIKNLDTEVTQEEFTEL 242
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDR 352
YG NV + D EG ++GF F+ + +A A L D+ LF
Sbjct: 243 FTRYG--NVTSSLVATDE--EGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARA 298
Query: 353 PAKVSFAD----SFIDPGDEIMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELA 406
K D S+ E +++ + +++ L +D+D++R + +G IT ++
Sbjct: 299 QKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDDKLRAEFEPFGAITSCKVM 358
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHAS 466
R+ K FGFV F + D A +NN +G + R Q+ + + A
Sbjct: 359 RDE-KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQ 417
Query: 467 RGDFRSGRGTGRATRGSW 484
R R + G +
Sbjct: 418 RNQIRMQQAAAAGVPGGY 435
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
++ K + +++ L+ D D LR F G +T ++M + + +KGF F+ F++
Sbjct: 317 LEKLSKYQGINLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRD-EKGTSKGFGFVCFSS 375
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQ 274
++A +AV E+ N +I K V+ +Q
Sbjct: 376 PDEATKAVAEMNNKMIGTKPLYVSLAQ 402
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 115/257 (44%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 44 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 103
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I + C + SQ L F+ N+ + +AL + +G NV +
Sbjct: 104 NYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFG--NVLSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG--VDRPAKVSFADSFI 363
D + G ++G+ F+ + + A +A K L + V G + R + S
Sbjct: 162 ATDEH--GRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKL---- 215
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
DE+ AQ +++ L ++ EL YG +T +A + K K FGFV ++
Sbjct: 216 ---DEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDE-EGKSKGFGFVNYE 271
Query: 424 THDAAVTCAKSINNAEL 440
H+ A +++ +L
Sbjct: 272 RHEEAQRAVDELHDTDL 288
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 32/318 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD+ + L F G V ++ + + ++KG+ F+ + T E A
Sbjct: 125 RKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAA 183
Query: 252 RQAVTELKNPVINGKQCGV---------------TPSQDSDTLFLGNICKTWTKEALKEK 296
A+ + ++N K+ V +Q ++ L++ N+ T+E E
Sbjct: 184 DNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQFTN-LYIKNLDTEVTQEEFTEL 242
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDR 352
YG NV + D EG ++GF F+ + +A A L D+ LF
Sbjct: 243 FTRYG--NVTSSLVATDE--EGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARA 298
Query: 353 PAKVSFAD----SFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELA 406
K D S+ E +++ + V ++ L +D+D++R + +G IT ++
Sbjct: 299 QKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDDKLRAEFEPFGAITSCKVM 358
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHAS 466
R+ K FGFV F + D A +NN +G + R Q+ + + A
Sbjct: 359 RDE-KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQ 417
Query: 467 RGDFRSGRGTGRATRGSW 484
R R + G +
Sbjct: 418 RNQIRMQQAAAAGVPGGY 435
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
++ K + +++ L+ D D LR F G +T ++M + + +KGF F+ F++
Sbjct: 317 LEKLSKYQGVNLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRD-EKGTSKGFGFVCFSS 375
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQ 274
++A +AV E+ N +I K V+ +Q
Sbjct: 376 PDEATKAVAEMNNKMIGTKPLYVSLAQ 402
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI G+ + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++++REL YG I + + + K + FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N E+ G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTR 290
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N E L+E YG N
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYG--N 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAKVSFADS 361
+ ++ D N G +RGF F+ F DA A + +++ L V R K +
Sbjct: 217 AMSIRVMTDEN--GKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQT 274
Query: 362 FIDPGDEIMAQVK-------TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
+ E M Q + ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 130 DEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQ 189
+ H+D ++ D++ EM G+ +++VE E + E +M Q
Sbjct: 239 ERHED---AQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFE----------QMKQ 285
Query: 190 ERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248
+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+ F++
Sbjct: 286 DRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 249 EQARQAVTELKNPVINGKQCGVTPSQ 274
E+A +AVTE+ ++ K V +Q
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 42/206 (20%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ R++R KEF V++ ++ + LR++FS+ G +R+M + + K++
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSR 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGV------------------TPSQDSDT-- 278
GF F+ F E A++AV E+ +NGK V QD T
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRY 291
Query: 279 ----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
L++ N+ E L+++ +G +T + G ++GF F+ FSS +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFAD 360
A + R V +P V+ A
Sbjct: 347 TKAVTEMNGRIV---ATKPLYVALAQ 369
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G++ +R+ + +TK++ G+A++ F+ +A + + +
Sbjct: 14 LYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTM 73
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
++ GK + SQ +L F+ N+ K+ +A+ + +G N+ +
Sbjct: 74 NFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFG--NILSCKV 131
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
D ++G+++G+ F+ F S A A +++ G+ K + FI +
Sbjct: 132 AID--DDGVSKGYGFVHFESIEAANKAIEKVN------GMLLNGKKVYVGKFIPRAEREK 183
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E + V+V + ++++ +L KNYG IT + N P K FGF+ F+
Sbjct: 184 EIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMAN-PDGTSKGFGFIAFEE 242
Query: 425 HDAAVTCAKSINNAEL 440
++A +NN EL
Sbjct: 243 PESAEKAVTEMNNYEL 258
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 35/256 (13%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + + FS G + ++ ++ +KG+ F+ F ++E A +A+ ++
Sbjct: 102 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVAID-DDGVSKGYGFVHFESIEAANKAIEKV 160
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++NGK+ V S+ +++ N + T+E L + K+YG
Sbjct: 161 NGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTIT 220
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRPAKVSFAD 360
+ V +N +G ++GF F+ F A A + ++ L+ V R K S
Sbjct: 221 ----SCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLY-VGRAQKKSERI 275
Query: 361 SFIDPGDEIM-------AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413
+ E M Q V++ L ++D DR+R+ +G IT A+ M
Sbjct: 276 KELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITS---AKVMTEGG 332
Query: 414 R-KDFGFVTFDTHDAA 428
R K FGFV F T + A
Sbjct: 333 RSKGFGFVCFSTPEEA 348
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 33/206 (16%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
+ +K V+V +++ + L +F G +T +M NP +KGF F+ F E A
Sbjct: 188 KSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPD-GTSKGFGFIAFEEPESA 246
Query: 252 RQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNICKT 287
+AVTE+ N +NG V +Q +++ N+ T
Sbjct: 247 EKAVTEMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDT 306
Query: 288 WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347
+ + L+++ +G +T + G ++GF F+ FS+ +A A + R +
Sbjct: 307 FDNDRLRKEFSQFGA-----ITSAKVMTEGGRSKGFGFVCFSTPEEASKAITEMDGR--M 359
Query: 348 FGVDRPAKVSFADSFIDPGDEIMAQV 373
G +P V+ A + D + AQ
Sbjct: 360 IG-SKPIYVALAQRYEDRRAYLSAQC 384
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 36/257 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+ + G+A++ F + A++A+ +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALDTM 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 127
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPAKV-SFA 359
S+++G ++G+AF+ F ++S A A K LQ V G DR A++ S A
Sbjct: 128 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSKA 186
Query: 360 DSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGF 419
F + V++ D++R++++ YG+ +++ + S K K FGF
Sbjct: 187 SEFTN-----------VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGF 234
Query: 420 VTFDTHDAAVTCAKSIN 436
V+FD+H+AA + +N
Sbjct: 235 VSFDSHEAAKKAVEEMN 251
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 34/196 (17%)
Query: 191 RRKRKEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
R K EF V++ D+ + L+ VFS+ G+ V++M + + K+KGF F+ F + E
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHE 241
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDS------------------------DTLFLGNIC 285
A++AV E+ ING+ V +Q L++ N+
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLD 301
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
T E L+ + +G ++ V+ EG ++GF + FSS DA+ A + R
Sbjct: 302 DTIDDEKLRNEFSSFG-----SISRVKVMQEEGQSKGFGLICFSSPEDALKAMTEMNGR- 355
Query: 346 VLFGVDRPAKVSFADS 361
+ G +P ++ A
Sbjct: 356 -ILG-SKPLSIALAQC 369
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 186 EMFQERRKRK-----EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
+MF++ +K + +++V LD + + LR FS G ++ V++M + ++KGF
Sbjct: 277 QMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGF 334
Query: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKE 291
+ F++ E A +A+TE+ ++ K + +Q S+ L L + W E
Sbjct: 335 GLICFSSPEDALKAMTEMNGRILGSKPLSIALAQCSE-LRLCHYTSAWVTE 384
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSQKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 24/258 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--TPSQDSDTLFLGNICKTWTKEALK--------EKLKHYGVDNVEDL 308
++N ++ V SQ LG K +T +K E+LK L
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 309 TLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPAKVSF 358
++ ++ G ++GF F+ F DA A K L + + G V+R ++
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278
Query: 359 ADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFG 418
+ Q ++V L D++R+R+ +G IT ++ M + K FG
Sbjct: 279 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFG 336
Query: 419 FVTFDTHDAAVTCAKSIN 436
FV F + + A +N
Sbjct: 337 FVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 34/191 (17%)
Query: 195 KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQ 253
KEF V++ +D+ + L+++F + G V++M + ++ K+KGF F+ F E A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246
Query: 254 AVTELKNPVINGKQCGV------------------TPSQDSDT------LFLGNICKTWT 289
AV E+ +NGKQ V QD T L++ N+
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 290 KEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
E L+++ +G +T + G ++GF F+ FSS +A A + R V
Sbjct: 307 DERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--- 358
Query: 350 VDRPAKVSFAD 360
+P V+ A
Sbjct: 359 ATKPLYVALAQ 369
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 42/206 (20%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ R++R KEF V++ +D+ + L+++F + G V++M + ++ K+K
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSK 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGV------------------TPSQDSDT-- 278
GF F+ F E A++AV E+ +NGKQ V QD T
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 279 ----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
L++ N+ E L+++ +G +T + G ++GF F+ FSS +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFAD 360
A + R V +P V+ A
Sbjct: 347 TKAVTEMNGRIV---ATKPLYVALAQ 369
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|218187131|gb|EEC69558.1| hypothetical protein OsI_38856 [Oryza sativa Indica Group]
Length = 560
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 15/137 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
R+ K EVFVGGL + V LR+VFS GE+ ++R+M + Q +KG+ F+RFA E A
Sbjct: 403 RRVKGAEVFVGGLPRSVTERALREVFSPCGEIVDLRIMKD-QNGISKGYGFVRFAERECA 461
Query: 252 RQAVTELK-------NPV--INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGV 302
A ++ N + + GK+ V S D DTLF GN+CK W E +E ++ +
Sbjct: 462 YIAKRQINGFEARISNFLFDLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELIRKSML 521
Query: 303 DNVEDLTLVEDSNNEGM 319
++V VE N+ M
Sbjct: 522 EDV-----VESCNSRMM 533
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L VF+QVG V VR+ + T+++ G+A++ +++ A +A+ L
Sbjct: 42 LYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEML 101
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
INGK + S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 102 NFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG--NILSCKV 159
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI--DPGDE 368
D++ E ++G+ F+++ A A +L G+ K + FI D
Sbjct: 160 ATDASGE--SKGYGFVQYERDEAAQAAIDKLN------GMLMNDKKVYVGPFIRKQERDN 211
Query: 369 IMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
QVK V+V L + ED ++E+ +G IT + R + K FGFV F++ D
Sbjct: 212 SPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMRE-GDGRSKCFGFVNFESPD 270
Query: 427 AAVTCAKSIN 436
A + +N
Sbjct: 271 DAAQAVQELN 280
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 43/299 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L F G + ++ + + ++KG+ F+++ E A
Sbjct: 123 RKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATD-ASGESKGYGFVQYERDEAA 181
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSDT---------LFLGNICKTWTKEALKEKLKH 299
+ A+ +L ++N K+ V P Q+ D +++ N+ + T++ LKE
Sbjct: 182 QAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGK 241
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAKV 356
+G + V +G ++ F F+ F S DA A + L + D + V R K
Sbjct: 242 FGTIT----SAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKK 297
Query: 357 S---------FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
S F + + D+ Q +++ L S D+D++REL YG IT ++ R
Sbjct: 298 SEREMELKEKFEKNLQEAADKY--QNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG-----------DNKAKVRARLSR 455
+ R GFV F + + A +N+ +G D KA+++A+ S+
Sbjct: 356 DSNGVSRGS-GFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKARLQAQFSQ 413
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L + V L VFSQVG V VR+ + ++K+ G+A++ + A +A+ L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
INGK + S + +F+ N+ K+ +AL + +G N+ +
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG--NILSCKI 154
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--E 368
D + E +RG+ F++F A A +L G+ K F F+ D
Sbjct: 155 ATDPSGE--SRGYGFVQFEKDESAQSAIDKLN------GMLINDKKVFVGPFVRKQDREN 206
Query: 369 IMAQVK--TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ + +K V+V L + +D ++E+ YG IT + R+ K + FGFV F+ D
Sbjct: 207 VSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRD-SDGKSRCFGFVNFENAD 265
Query: 427 AAVTCAKSIN 436
AA + +N
Sbjct: 266 AAAQAVQELN 275
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK +F+ LDK + L F G + ++ +P + +++G+ F++F E A
Sbjct: 118 RKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESA 176
Query: 252 RQAVTELKNPVINGKQCGVTP---SQDSD---------TLFLGNICKTWTKEALKEKLKH 299
+ A+ +L +IN K+ V P QD + +++ N+ T T + LKE
Sbjct: 177 QSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGK 236
Query: 300 YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342
YG + ++ DS +G +R F F+ F + A A + L
Sbjct: 237 YGT--ITSAVVMRDS--DGKSRCFGFVNFENADAAAQAVQELN 275
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
V+V L V D+L+++F + G +T ++M K++ F F+ F + A QAV E
Sbjct: 215 NVYVKNLSDTVTDDELKEMFGKYGTITSA-VVMRDSDGKSRCFGFVNFENADAAAQAVQE 273
Query: 258 LKNPVI 263
L + V+
Sbjct: 274 LNDGVV 279
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 42/206 (20%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ R++R KEF V++ +D+ + L+++F + G V++M + ++ K+K
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSK 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGV------------------TPSQDSDT-- 278
GF F+ F E A++AV E+ +NGKQ V QD T
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 279 ----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
L++ N+ E L+++ +G +T + G ++GF F+ FSS +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFAD 360
A + R V +P V+ A
Sbjct: 347 TKAVTEMNGRIV---ATKPLYVALAQ 369
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 31/249 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L D L ++F+ VG V +R+ + T+++ G+A++ F V A +A+ +
Sbjct: 15 LYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTM 74
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I K C + SQ TL F+ N+ + +AL + +G N+ +
Sbjct: 75 NYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFSLFG--NILSCKV 132
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI- 369
D G ++G+ ++ + S A DA ++ + K + F+ +
Sbjct: 133 ATD--EAGRSQGYGYVHYESEDAATDAINKINSMTIC------DKEVYVGHFVRRTERSG 184
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+ ++V PA WDE +R+ + + +A FG+V F+ HDAAV
Sbjct: 185 QSDWTNLYVKNFPADWDEATLRKAFEMFA------------AADGSAFGWVNFEGHDAAV 232
Query: 430 TCAKSINNA 438
++N A
Sbjct: 233 AAMDALNGA 241
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
+K + +FV LD + D LR+ F++ G +T R+M P T ++GF F+ F++ E+A
Sbjct: 287 KKYQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEA 346
Query: 252 RQAVTELKNPVINGKQCGVTPSQ 274
+AVTE+ N ++ GK V +Q
Sbjct: 347 AKAVTEMNNKLVLGKPIFVALAQ 369
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 104/270 (38%), Gaps = 34/270 (12%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VFV LD + L FS G + ++ + + +++G+ ++ + + + A
Sbjct: 96 RKSGVGNVFVKNLDSSIDHKALFDTFSLFGNILSCKVATD-EAGRSQGYGYVHYESEDAA 154
Query: 252 RQAVTELKNPVINGKQCGV---------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGV 302
A+ ++ + I K+ V + D L++ N W + L++ + +
Sbjct: 155 TDAINKINSMTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFPADWDEATLRKAFEMFAA 214
Query: 303 DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL--QKRDVLFGVDRPAKVSFAD 360
+ V N EG + A + DA++ L + P V A
Sbjct: 215 ADGSAFGWV---NFEGHDAAVAAM------DALNGASELPGHAGTAPITLKSPLFVGRAQ 265
Query: 361 SFIDPGDEIMA-------------QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELAR 407
++ E+ A Q +FV L + D+D++RE YG IT + R
Sbjct: 266 KKVERERELKAKFDAAKIERIKKYQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMR 325
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437
+ + FGFV F + + A +NN
Sbjct: 326 EPATGTSRGFGFVCFSSPEEAAKAVTEMNN 355
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 24/260 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++ G L DV L +VF+ +G V +R+ + T+K+ G+A++ F V A +A+ L
Sbjct: 50 LYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + S L ++ N+ + +AL + +G + L
Sbjct: 110 NYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF---IDPGD 367
D G +RGF F+ F S A A +L G+ K + F + D
Sbjct: 170 TPD----GKSRGFGFVHFESDESAEAAIAKLN------GMQIGEKTVYVAPFKKTAERND 219
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
V++ +PASW+E++++E +GEIT + + + P +R F FV + +
Sbjct: 220 GTPKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTD-PKGRR--FAFVNYAEFEQ 276
Query: 428 AVTCAKSINNAELGEGDNKA 447
A + ++ ++ + KA
Sbjct: 277 ARAAVEEMDGKDVRNEEEKA 296
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V L +DV +L+K+F G VT V++M++ + ++GF F+ F+T E+A +AVT++
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDK-GVSRGFGFVCFSTHEEATKAVTDM 435
Query: 259 KNPVINGK 266
+I GK
Sbjct: 436 HLKLIGGK 443
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 25/265 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++G L DV L + FS G V +R+ + ++ + G+A++ F A +A+ +
Sbjct: 57 LYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 116
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI+G+ + SQ + +F+ N+ + +++ + +G N+ +
Sbjct: 117 NFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
D EG ++G+ F+ F + + A+ A ++ L + V G +P A +
Sbjct: 175 ATDE--EGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVFVGKFQPR----AQRMKEL 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDT 424
G+ + + VF+ DE ++ E+ YGEIT + + N S K K FGFV F
Sbjct: 229 GESGL-KYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDN--SGKPKGFGFVAFVD 285
Query: 425 HDAAVTCAKSINNAELGEGDNKAKV 449
DAA+ ++N + L D K V
Sbjct: 286 PDAAIKAVDTLNESTLEGTDLKLSV 310
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 109/269 (40%), Gaps = 32/269 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LD+ + + FS G + ++ + + +KG+ F+ F T A A+ ++
Sbjct: 145 IFIKNLDRVIDNKSIYDTFSLFGNILSCKVATD-EEGNSKGYGFVHFETEASALTAIEKV 203
Query: 259 KNPVINGKQCGVTPSQ--------------DSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
+++ K+ V Q +F+ N ++ L E YG
Sbjct: 204 NGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYG--- 260
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFGVDRPAKVSFA 359
E + V ++N G +GF F+ F A+ A L+ D+ V R K S
Sbjct: 261 -EITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQKKSER 319
Query: 360 DSFIDPGDEIMAQVKT-------VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
+ + E + Q + ++V + +D +RE N+G IT ++ + +
Sbjct: 320 TAELKRKYEALKQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVD-ENG 378
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ K FGFV F+ + A +N+ +G
Sbjct: 379 RSKGFGFVCFEKPEEATAAVTEMNSKMIG 407
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 189 QERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
QER +R + ++V +++++ D LR+ F+ G +T ++M++ + ++KGF F+ F
Sbjct: 332 QERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVD-ENGRSKGFGFVCFEK 390
Query: 248 VEQARQAVTELKNPVINGKQCGVTPSQ 274
E+A AVTE+ + +I K V +Q
Sbjct: 391 PEEATAAVTEMNSKMIGAKPLYVALAQ 417
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 42/206 (20%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ R++R KEF V++ +D+ + L+++F + G V++M + ++ K+K
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSK 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGV------------------TPSQDSDT-- 278
GF F+ F E A++AV E+ +NGKQ V QD T
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 279 ----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
L++ N+ E L+++ +G +T + G ++GF F+ FSS +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFAD 360
A + R V +P V+ A
Sbjct: 347 TKAVTEMNGRIV---ATKPLYVALAQ 369
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,041,019,703
Number of Sequences: 23463169
Number of extensions: 730973946
Number of successful extensions: 4999332
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 20967
Number of HSP's successfully gapped in prelim test: 48737
Number of HSP's that attempted gapping in prelim test: 3702059
Number of HSP's gapped (non-prelim): 604427
length of query: 775
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 624
effective length of database: 8,816,256,848
effective search space: 5501344273152
effective search space used: 5501344273152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 81 (35.8 bits)