Query 004072
Match_columns 775
No_of_seqs 253 out of 764
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 17:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00148 potassium transporter 100.0 1E-257 3E-262 2180.0 67.2 763 7-775 17-785 (785)
2 PLN00149 potassium transporter 100.0 1E-255 2E-260 2166.6 68.4 758 3-775 12-779 (779)
3 PLN00151 potassium transporter 100.0 2E-255 5E-260 2158.8 66.3 744 9-775 100-852 (852)
4 PLN00150 potassium ion transpo 100.0 2E-252 4E-257 2136.3 65.4 741 3-775 38-779 (779)
5 TIGR00794 kup potassium uptake 100.0 1E-230 3E-235 1948.4 61.1 687 14-775 1-688 (688)
6 PRK10745 trkD potassium transp 100.0 3E-208 6E-213 1741.7 57.2 617 5-775 3-622 (622)
7 PF02705 K_trans: K+ potassium 100.0 3E-199 6E-204 1657.1 43.9 534 15-590 1-534 (534)
8 COG3158 Kup K+ transporter [In 100.0 2E-193 5E-198 1583.5 53.6 618 5-774 9-626 (627)
9 TIGR00911 2A0308 L-type amino 92.9 0.4 8.7E-06 55.2 9.1 87 185-275 165-255 (501)
10 COG0531 PotE Amino acid transp 82.3 15 0.00033 41.1 12.3 177 184-366 133-324 (466)
11 TIGR00909 2A0306 amino acid tr 81.5 34 0.00073 38.4 14.7 168 186-366 134-316 (429)
12 TIGR03813 put_Glu_GABA_T putat 81.2 34 0.00075 39.2 14.9 51 260-310 199-251 (474)
13 PRK10435 cadB lysine/cadaverin 80.5 59 0.0013 37.0 16.4 23 188-210 124-146 (435)
14 PRK10655 potE putrescine trans 80.4 55 0.0012 37.0 16.0 43 187-229 125-170 (438)
15 TIGR00930 2a30 K-Cl cotranspor 78.9 1.4E+02 0.0031 38.1 20.3 25 185-209 203-227 (953)
16 PF13520 AA_permease_2: Amino 77.9 10 0.00022 42.3 9.1 247 160-422 90-366 (426)
17 PRK15049 L-asparagine permease 77.3 31 0.00068 40.2 13.2 22 188-209 147-168 (499)
18 TIGR00907 2A0304 amino acid pe 76.9 24 0.00053 40.4 12.0 25 466-490 454-478 (482)
19 TIGR03810 arg_ornith_anti argi 67.3 1.1E+02 0.0024 35.2 14.4 45 323-367 273-317 (468)
20 TIGR00906 2A0303 cationic amin 67.2 2E+02 0.0044 34.3 16.9 45 185-229 161-208 (557)
21 PRK11021 putative transporter; 66.0 2E+02 0.0044 32.2 16.0 28 185-212 115-142 (410)
22 PRK10746 putative transport pr 58.9 1.8E+02 0.0038 33.6 14.1 26 466-491 427-452 (461)
23 PF14362 DUF4407: Domain of un 57.8 73 0.0016 34.6 10.2 54 405-458 13-70 (301)
24 PRK10249 phenylalanine transpo 55.9 1.4E+02 0.003 34.3 12.6 102 188-291 138-247 (458)
25 TIGR00908 2A0305 ethanolamine 54.5 91 0.002 35.3 10.7 25 187-211 123-147 (442)
26 KOG3145 Cystine transporter Cy 53.4 13 0.00028 41.1 3.5 89 188-287 212-340 (372)
27 PRK11049 D-alanine/D-serine/gl 49.8 3.9E+02 0.0084 30.8 14.9 107 260-367 216-333 (469)
28 PRK10238 aromatic amino acid t 49.5 1.4E+02 0.0031 34.2 11.4 43 261-304 206-250 (456)
29 PRK11357 frlA putative fructos 49.4 3.1E+02 0.0068 31.1 14.0 45 186-230 128-175 (445)
30 PRK15238 inner membrane transp 48.2 5E+02 0.011 30.2 18.9 26 1-27 1-26 (496)
31 PRK10580 proY putative proline 46.7 2.5E+02 0.0055 32.1 12.7 25 464-488 423-447 (457)
32 TIGR00905 2A0302 transporter, 45.9 1.1E+02 0.0024 35.2 9.8 170 186-367 130-321 (473)
33 TIGR00910 2A0307_GadC glutamat 45.4 3.8E+02 0.0082 31.5 14.1 47 262-308 201-249 (507)
34 PRK10644 arginine:agmatin anti 45.2 1.6E+02 0.0035 33.5 10.8 24 187-210 127-150 (445)
35 TIGR01773 GABAperm gamma-amino 44.8 5.2E+02 0.011 29.4 15.8 44 187-230 128-174 (452)
36 PRK11387 S-methylmethionine tr 44.4 2.5E+02 0.0053 32.4 12.3 21 189-209 133-153 (471)
37 TIGR00913 2A0310 amino acid pe 44.3 4.9E+02 0.011 29.9 14.6 22 467-488 443-464 (478)
38 COG4059 MtrE Tetrahydromethano 40.2 26 0.00057 37.3 3.2 31 461-491 257-287 (304)
39 KOG3643 GABA receptor [Signal 38.7 28 0.0006 40.4 3.4 91 360-454 225-325 (459)
40 PF06570 DUF1129: Protein of u 35.7 1.4E+02 0.0031 30.9 7.8 21 465-485 179-199 (206)
41 KOG4742 Predicted chitinase [G 27.4 27 0.00059 38.4 0.9 32 277-317 171-207 (286)
42 TIGR03428 ureacarb_perm permea 27.0 1E+03 0.022 27.4 17.7 26 185-210 144-169 (475)
43 PF05545 FixQ: Cbb3-type cytoc 21.9 75 0.0016 25.6 2.3 29 474-502 19-47 (49)
44 COG2179 Predicted hydrolase of 21.9 16 0.00034 37.5 -1.9 61 710-771 55-118 (175)
45 PF00324 AA_permease: Amino ac 21.2 78 0.0017 36.3 3.1 34 258-291 203-238 (478)
No 1
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=1.2e-257 Score=2180.05 Aligned_cols=763 Identities=61% Similarity=1.058 Sum_probs=694.1
Q ss_pred chhh---hHHHHHhhcceeecccCcchHHHHHHhcCCCCCCCCCcCceehhhHHHHHHHHHHhhhheeeEEEEecCCCCC
Q 004072 7 PRQE---FLLLAYQSFGIVFSDLSISPLYVYKSTFSGSLRHYQNEDAVFGAFSVIFWTLTLLSLFKYVIIVLNADDNGEG 83 (775)
Q Consensus 7 ~~~~---~~~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvlSLIfWtLtliv~iKYv~ivL~Adn~GEG 83 (775)
+|+. ++.|||||+|||||||||||||||+++|+++++..+++|||+|+|||||||||||+++|||+|||||||||||
T Consensus 17 ~w~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~~~~~~~~~~~~ilGvLSLIfWtLtLiv~iKYV~ivlrAdn~GEG 96 (785)
T PLN00148 17 SWVNLSRNLLLAYQSFGVVYGDLSTSPLYVYKSTFSGKLQKHQNEETIFGAFSLIFWTFTLIPLLKYVTILLSADDNGEG 96 (785)
T ss_pred hhhHHhHHHHHHHhcccEEeCcccccHHHHHHHHhcCCCCCCCCHHHHHhHHHHHHHHHHHHHHHhheEEEEEecCCCCc
Confidence 5666 7899999999999999999999999999876666799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcccCCCCCCCccccccccccCCCCCCCCCCCchhhHhhhhccchhhHHHHHHHHhhhhhhcCccccch
Q 004072 84 GTFSLYALLCRHAKVGLLPNHQAADEELTTYHDPGYSSRNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPA 163 (775)
Q Consensus 84 G~fALysLl~r~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPA 163 (775)
||||||||+|||+|++++||||++|+++++|++..++.+ +++.++|++||+|+++|.+++++|++|+||+|||||||||
T Consensus 97 G~fALysLl~r~~~~~~~pn~~~~d~~ls~~~~~~~~~~-~~~~~~k~~lE~~~~~~~~ll~l~l~G~am~~gDgvlTPA 175 (785)
T PLN00148 97 GTFALYSLLCRHAKLSLLPNQQAADEELSAYKYGPSTQT-VGSSPLKRFLEKHKRLRTALLLVVLFGACMVIGDGVLTPA 175 (785)
T ss_pred hHHHHHHHHHHhcccccCccchhhhhhhhhhccCccccc-hhhhHHHHHhhhchHHHHHHHHHHHHHHHHHHhccccchh
Confidence 999999999999999999999999999999988654443 4567899999999999999999999999999999999999
Q ss_pred hhhhhhhccceecccCCCcceEehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCcceeeecCh
Q 004072 164 ISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALSP 243 (775)
Q Consensus 164 ISVLSAveGl~v~~p~~~~~~Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP 243 (775)
|||||||||||++.|++++++||||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||+||||
T Consensus 176 ISVLSAVeGl~v~~p~~~~~~vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP 255 (785)
T PLN00148 176 ISVLSSVSGLQVTETKLTDGELVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSP 255 (785)
T ss_pred HHHHHHhccceecCCCCCCCeehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcceeeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhcccccchhccCCCccCCccccc
Q 004072 244 YYIYKFFKYTGRDGWTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHAS 323 (775)
Q Consensus 244 ~ya~~ff~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~ 323 (775)
+|+++||++||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||++.+||||++
T Consensus 256 ~y~~~ff~~~~~~g~~~LGgV~L~iTGaEALyADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFf~~ 335 (785)
T PLN00148 256 YYIIKFFRVTGKDGWISLGGILLSITGTEAMFADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIPSIPNSFYDS 335 (785)
T ss_pred HHHHHHHHhCCCceEEeecchheeccchhhhhhhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCcccccCcHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhheeeEEecCc
Q 004072 324 IPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRDT 403 (775)
Q Consensus 324 iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s 403 (775)
+|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||
T Consensus 336 iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s 415 (785)
T PLN00148 336 IPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDT 415 (785)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHHH
Q 004072 404 NRLANAYGSACMALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPNGGWVALMFTTVFLAIMYVW 483 (775)
Q Consensus 404 ~~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~i~~~iM~~W 483 (775)
++||||||+||++||++||+|+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|++|
T Consensus 416 ~~la~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W 495 (785)
T PLN00148 416 TLIGNAYGLACMTVMFITTFLMALVIIFVWQKSIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMSIMYIW 495 (785)
T ss_pred hhHHHhhhhheeeHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhhhhcCCCChHHHHHhccCCCCCccCCcEEEEeCCCCCchhhHHhhhhhccccceEEEEEEEEEecccccCC
Q 004072 484 HYGSRKRYLYDLHNKVPMKWILAQGSSLGIVRVPGIGLLFTELANGVPPTFTHFLTNLPAFYQVVVFICVKTVPLPYVHH 563 (775)
Q Consensus 484 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~~vP~~~~h~v~~~~~lh~~~vfv~i~~~~vP~V~~ 563 (775)
|||++++|+++.+|++|++++.++.++.++.||||+|+|||++.+|+|++|.||++|||++||++||||||++|+|+||+
T Consensus 496 ~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~RVpG~~vf~t~~~~gvP~~f~h~~~~~~~lHe~~Vfv~ik~~~vP~V~~ 575 (785)
T PLN00148 496 HYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSP 575 (785)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccCh
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCCCccEEEEEEEeeecccCCCchhhHHHHHHHHHHHHHhhhccCC-C-C-CCCCCCcceeeecccccccc
Q 004072 564 KERYLIGRIGPKSYRMYRCIVRNGYKDVPNSGDDFENDIVMSIAEFIQMEAEGFT-N-L-DAPVDGWLAVVRTSEKFGKR 640 (775)
Q Consensus 564 ~eR~~v~~~~~~~~~~yr~~vryGy~d~~~~~~~F~~~lv~~L~~FIr~E~~~~~-~-~-~~~~~~~~~~~~~~s~~~~~ 640 (775)
+|||+++|+++++|++|||++||||||.+++++|||++|+++|++|||+|+.+.+ + + .++++++++++++++..+.+
T Consensus 576 ~eR~~v~~i~~~~yr~~r~vvryGy~d~~~~~~dFe~~Lv~~L~~FIr~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (785)
T PLN00148 576 EERFLIGRVCPRPYRMYRCIVRYGYKDIQRDDGDFENMLVQSIAEFIQMEAEEPQSSASESSSNDGRMAVISTRDVQSSS 655 (785)
T ss_pred hheEEEEEecCCCceEEEEEEEEccCcccccchHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999988899999999999999999985421 1 1 11113445555433211111
Q ss_pred cccccCCcccccCCCCCCccCCCCCCchhhhhhcccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCcEE
Q 004072 641 LARSESDSKEESCSSSFPITGSCSKSPALQKLQSMYEQESPDLNYRPRVQFKLTDTKFKDLRVKEELLQLLEAKCAGVSY 720 (775)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~eEL~~L~~A~eaGVvY 720 (775)
....+.+ +..+..+.. .+. ++.+.++.++.++.++++...+++++|..+++.+.+++++||+++|++|||+||+|
T Consensus 656 ~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~~L~~A~eaGVvY 730 (785)
T PLN00148 656 LLMVSEQ---ELADIDDSI-QSS-KSLTLQSLQSAYEDENPGQSRRRRVRFQLPENPGMDPSVREELMDLIEAKEAGVAY 730 (785)
T ss_pred ccccccc---ccccccccc-ccc-cccccccccccccccccccccccceeecccccccccchHHHHHHHHHHHHHcCcEE
Confidence 0000000 000000000 000 11111223333344444445567888876655556788999999999999999999
Q ss_pred EEeecEEEecCCCchhHHHHHHHHHHHHHhhcCCCCcccccCCCCEEEeeeEEEC
Q 004072 721 IIGHSRIKAKWNAPFLKRFVINVAYSFLRKNSRSPAVFLNIPHICLIEVGINYYL 775 (775)
Q Consensus 721 IlG~s~vkAr~~Ss~lKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvY~v 775 (775)
|+||++||||++|+|+||++||++|+|||||||+|.++|+|||+|||||||+|||
T Consensus 731 IlG~s~v~Ar~~Ss~~KKivIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGM~Y~V 785 (785)
T PLN00148 731 IMGHSYVKARRSSSFLKKLAIDIGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV 785 (785)
T ss_pred EeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEcceEEEC
Confidence 9999999999999999999999999999999999999999999999999999997
No 2
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=9.6e-256 Score=2166.56 Aligned_cols=758 Identities=52% Similarity=0.933 Sum_probs=687.8
Q ss_pred cCCCchhhhHHHHHhhcceeecccCcchHHHHHHhcCCCCCCCCCcCceehhhHHHHHHHHHHhhhheeeEEEEecCCCC
Q 004072 3 ETKSPRQEFLLLAYQSFGIVFSDLSISPLYVYKSTFSGSLRHYQNEDAVFGAFSVIFWTLTLLSLFKYVIIVLNADDNGE 82 (775)
Q Consensus 3 ~~~~~~~~~~~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvlSLIfWtLtliv~iKYv~ivL~Adn~GE 82 (775)
+++.+|+.++.|||||+|||||||||||||||+++|+++++..+++|||+|+|||||||||||+++|||+||||||||||
T Consensus 12 ~~~~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvLSLIfWtL~Liv~iKYv~ivlrAdn~GE 91 (779)
T PLN00149 12 VKKESWRTVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSETNEEIFGVLSFVFWTLTLIPLLKYVFIVLRADDNGE 91 (779)
T ss_pred cccccHHHHHHHHHhcccEEeCcccccHHHHHHHHhcCCCCCCCCHHHhhhHHHHHHHHHHHHHhhhhEEEEEEecCCCC
Confidence 35577888899999999999999999999999999987666779999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhcccCCCCCCCccccccccccCCCCCCC---CCCCchhhHhhhhccchhhHHHHHHHHhhhhhhcCcc
Q 004072 83 GGTFSLYALLCRHAKVGLLPNHQAADEELTTYHDPGYSSR---NMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGV 159 (775)
Q Consensus 83 GG~fALysLl~r~~~~~~~p~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGv 159 (775)
|||||||||+|||+|++++||||++|+++|+|+++.++.+ .+++.++|++||||+.+|++++++|++|+||+|||||
T Consensus 92 GGtfALysLl~r~~~~~l~pn~~~~d~~ls~~~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~ll~l~l~G~~m~igDgv 171 (779)
T PLN00149 92 GGTFALYSLLCRHARVNSLPNCQLADEELSEYKKDSGSSSMPLSGFGSSLKSTLEKHRVLQRFLLVLALIGTCMVIGDGV 171 (779)
T ss_pred chHHHHHHHHHHhccccCCccccchhhhhhhhhccccccccccchhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998775433 2346789999999999999999999999999999999
Q ss_pred ccchhhhhhhhccceecccCCCcceE-ehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCccee
Q 004072 160 LTPAISVLSSIDGLQVQLQNRHTRMV-VFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVY 238 (775)
Q Consensus 160 iTPAISVLSAveGl~v~~p~~~~~~V-v~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl 238 (775)
||||||||||||||++..|...++++ |||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||
T Consensus 172 lTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl 251 (779)
T PLN00149 172 LTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVY 251 (779)
T ss_pred cchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHh
Confidence 99999999999999999976544455 99999999999999999999999999999999999999999999999999999
Q ss_pred eecChHHHHHHHHhcCcceeeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhcccccchhccCCC---c
Q 004072 239 QALSPYYIYKFFKYTGRDGWTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFS---A 315 (775)
Q Consensus 239 ~AlnP~ya~~ff~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~---~ 315 (775)
+||||+|+++||++||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||+ +
T Consensus 252 ~AlnP~y~~~f~~~~~~~g~~~LGgV~L~iTG~EALyADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~ 331 (779)
T PLN00149 252 QALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESD 331 (779)
T ss_pred hhcCHHHHHHHHHHCCCceeEeecchhhcccchhhhhhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cCCccccccCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhhe
Q 004072 316 APLSFHASIPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLA 395 (775)
Q Consensus 316 ~~npFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~ 395 (775)
++||||+++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++
T Consensus 332 ~~~pFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~ 411 (779)
T PLN00149 332 YRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLA 411 (779)
T ss_pred ccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHh
Confidence 66699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCchhHHhhhhchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHH
Q 004072 396 VTVGFRDTNRLANAYGSACMALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPNGGWVALMFTTV 475 (775)
Q Consensus 396 vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~i 475 (775)
+|++||||++||||||+||++||++||||+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++
T Consensus 412 vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~lv~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v 491 (779)
T PLN00149 412 VTVGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHKSVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFI 491 (779)
T ss_pred heeEecChHHHHHHhhhhhehHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhhcCCCChHHHHHhccCCCCCccCCcEEEEeCCCCCchhhHHhhhhhccccceEEEEEEEEE
Q 004072 476 FLAIMYVWHYGSRKRYLYDLHNKVPMKWILAQGSSLGIVRVPGIGLLFTELANGVPPTFTHFLTNLPAFYQVVVFICVKT 555 (775)
Q Consensus 476 ~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~~vP~~~~h~v~~~~~lh~~~vfv~i~~ 555 (775)
++++|++||||++++|+++.+|++|++++.++.++.++.||||+|+|||++.+|+|++|.||++|||++||++||+|||+
T Consensus 492 ~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~~~~~~~lhe~~Vfv~ik~ 571 (779)
T PLN00149 492 FLLVMYVWHYGTLKRYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKS 571 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhccCCCCcccCcEEEEEcCCCCCCCHHHHHHHHhCCcccceEEEEEEEE
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ecccccCCCceEEEEeecCCCccEEEEEEEeeecccCCCchhhHHHHHHHHHHHHHhhhccCCC-C--CCCCCCcceeee
Q 004072 556 VPLPYVHHKERYLIGRIGPKSYRMYRCIVRNGYKDVPNSGDDFENDIVMSIAEFIQMEAEGFTN-L--DAPVDGWLAVVR 632 (775)
Q Consensus 556 ~~vP~V~~~eR~~v~~~~~~~~~~yr~~vryGy~d~~~~~~~F~~~lv~~L~~FIr~E~~~~~~-~--~~~~~~~~~~~~ 632 (775)
+|+|+||++|||+++|+++++|++|||++||||||..++++|||++|+++|++|||+|+.+.+. + .+++|+++++++
T Consensus 572 ~~vP~V~~~eR~~v~~i~~~~~~~~r~vvryGy~d~~~d~~dFE~~Lve~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~ 651 (779)
T PLN00149 572 VPVPHVRPEERFLVGRIGPKEYRLYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSEKPEPNGAPENEEGEDERMTVVG 651 (779)
T ss_pred CcccccChhheEEEEEecCCCceEEEEEEEEeeccccccchHHHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Confidence 9999999999999999999999999999999999999889999999999999999999753211 1 111134555554
Q ss_pred cccccccccccccCCcccccCCCCCCccCCCCCCchhhhhhcccccCCCCCCCCCccccccccccccchhHHHHHHHHHH
Q 004072 633 TSEKFGKRLARSESDSKEESCSSSFPITGSCSKSPALQKLQSMYEQESPDLNYRPRVQFKLTDTKFKDLRVKEELLQLLE 712 (775)
Q Consensus 633 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~eEL~~L~~ 712 (775)
+++..+++....+.. ... . .+ .+.++..+.++. +.+ ..+|+++|..+++.+.+++++||+++|++
T Consensus 652 ~~~~~~~~~~~~~~~-----~~~---~-~~-~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~v~eEl~~L~~ 716 (779)
T PLN00149 652 TCSTHLEGIQLREDD-----SDK---Q-EP-AGTSELREIRSP-PVS----RPKKRVRFVVPESPKIDRGAREELQELME 716 (779)
T ss_pred ccccccccccccccc-----ccc---c-cc-ccccccccccCc-ccc----CcccceeeccccccccchhHHHHHHHHHH
Confidence 332211110000000 000 0 00 001111111111 111 12367888766666667899999999999
Q ss_pred HHhCCcEEEEeecEEEecCCCchhHHHHHHHHHHHHHhhcCCCCcccccCCCCEEEeeeEEEC
Q 004072 713 AKCAGVSYIIGHSRIKAKWNAPFLKRFVINVAYSFLRKNSRSPAVFLNIPHICLIEVGINYYL 775 (775)
Q Consensus 713 A~eaGVvYIlG~s~vkAr~~Ss~lKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvY~v 775 (775)
|||+||+||+||++||||++|+|+||++|||+|+|||||||+|.++|+|||+|||||||+|||
T Consensus 717 A~eaGVvYIlG~s~v~Ar~~Ss~~KK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~v 779 (779)
T PLN00149 717 AREAGMAYILGHSYVRAKQGSSMMKKLVINYGYDFLRRNSRGPRYALSVPHASTLEVGMVYHV 779 (779)
T ss_pred HHHcCcEEEecCceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=2.2e-255 Score=2158.82 Aligned_cols=744 Identities=42% Similarity=0.760 Sum_probs=675.0
Q ss_pred hhhHHHHHhhcceeecccCcchHHHHHHhcCCCCCCCCCcCceehhhHHHHHHHHHHhhhheeeEEEEecCCCCChHHHH
Q 004072 9 QEFLLLAYQSFGIVFSDLSISPLYVYKSTFSGSLRHYQNEDAVFGAFSVIFWTLTLLSLFKYVIIVLNADDNGEGGTFSL 88 (775)
Q Consensus 9 ~~~~~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvlSLIfWtLtliv~iKYv~ivL~Adn~GEGG~fAL 88 (775)
.+++.|||||+|||||||||||||||+++|++ ...+++|||+|+|||||||||||+++|||+||||||||||||||||
T Consensus 100 w~~l~La~qslGVVyGDIGTSPLYv~~s~F~~--~~~~~~~dIlGvLSLIfWtLtLiv~iKYV~iVLrAdd~GEGGtfAL 177 (852)
T PLN00151 100 GRTLALAFQTLGVVFGDVGTSPLYTFSVMFSK--VPIKSEEDVLGALSLVLYTLILIPLAKYVLVVLWANDDGEGGTFAL 177 (852)
T ss_pred HHHHHHHHhhhceEeCcCCCCHHHHHHHHhcC--CCCCChhheeeehHHHHHHHHHHHHHhheeEEEEecCCCCchHHHH
Confidence 34588999999999999999999999999974 1236999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCCCCccccccccccCCCCCCCCCCCchhhHhhhhccchhhHHHHHHHHhhhhhhcCccccchhhhhh
Q 004072 89 YALLCRHAKVGLLPNHQAADEELTTYHDPGYSSRNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLS 168 (775)
Q Consensus 89 ysLl~r~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLS 168 (775)
|||+|||+|++++||||++|+++|+|+.+.|+++.++++++|++||+|+++|.+++++|++|+||+||||||||||||||
T Consensus 178 ySLl~R~a~~~llpnq~~~de~ls~~~~~~~~~~~~~~~~~k~~lE~s~~~k~~ll~l~l~GtamviGDGvlTPAISVLS 257 (852)
T PLN00151 178 YSLICRHAKVSLLPNQLPSDERISSFRLKLPTPELERSLKIKERLETSSLLKKLLLLLVLAGTSMVIGDGVLTPAMSVMS 257 (852)
T ss_pred HHHHHHhcCcCccccccchHhhhhhhcccCCccccchhHHHHHHhhhhHHHHHHHHHHHHHhHHHHhcccccccchhhhh
Confidence 99999999999999999999999999999988888888999999999999999999999999999999999999999999
Q ss_pred hhccceecccCCCcceEehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCcceeeecChHHHHH
Q 004072 169 SIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPYYIYK 248 (775)
Q Consensus 169 AveGl~v~~p~~~~~~Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ya~~ 248 (775)
||||||++.|++++++||||||+||++||++||+||+|||++|||||++||++|+++|+|||++|||+||+||||+|+++
T Consensus 258 AVeGL~v~~p~l~~~~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~ 337 (852)
T PLN00151 258 AVSGLKVGVPGFGQDAVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYY 337 (852)
T ss_pred hhccccccCCcCCCCeehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhcccccchhccCCCccCCccccccCCCc
Q 004072 249 FFKYTGRDGWTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHASIPDPL 328 (775)
Q Consensus 249 ff~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~iP~~~ 328 (775)
||++||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||++.+||||+++|+|+
T Consensus 338 Ff~~~~~~gw~~LGgVvLciTGaEALfADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~~~ 417 (852)
T PLN00151 338 FFKRNSTKAWSALGGCVLCATGSEAMFADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPSSL 417 (852)
T ss_pred HHHhCCCceEEEecceeeeeccchhhhcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhheeeEEecCchhHHh
Q 004072 329 RWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRDTNRLAN 408 (775)
Q Consensus 329 ~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~ 408 (775)
+||+|++||+||||||||||||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||++|||
T Consensus 418 ~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~ 497 (852)
T PLN00151 418 FWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGN 497 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHHHHHhHH
Q 004072 409 AYGSACMALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPNGGWVALMFTTVFLAIMYVWHYGSR 488 (775)
Q Consensus 409 AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~ 488 (775)
|||+||++||++||||+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|++||||++
T Consensus 498 AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~yG~~ 577 (852)
T PLN00151 498 AYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFLCIMYIWNYGSK 577 (852)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCChHHHHHhccCCCCCccCCcEEEEeCCCCCchhhHHhhhhhccccceEEEEEEEEEecccccCCCceEE
Q 004072 489 KRYLYDLHNKVPMKWILAQGSSLGIVRVPGIGLLFTELANGVPPTFTHFLTNLPAFYQVVVFICVKTVPLPYVHHKERYL 568 (775)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~~vP~~~~h~v~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~ 568 (775)
++|+++.+|++|++++.++.++.++.||||+|+|||++.+|+|++|.||++|||++||++||||||++|+|+||++|||+
T Consensus 578 ~~~~~~~~~~vs~~~~~~L~~~~~~~RVpGiglf~t~~~~gvP~~f~h~i~~~~alHe~~Vfv~ik~~~vP~V~~~eR~l 657 (852)
T PLN00151 578 LKYQSEVRQKLSMDLMRELGSNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAIHSTIIFVCIKYVPVPVVPQEERFL 657 (852)
T ss_pred HHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEE
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCccEEEEEEEeeecccCC-CchhhHHHHHHHHHHHHHhhhccCCCCCCCC----CC---cceeeecccccccc
Q 004072 569 IGRIGPKSYRMYRCIVRNGYKDVPN-SGDDFENDIVMSIAEFIQMEAEGFTNLDAPV----DG---WLAVVRTSEKFGKR 640 (775)
Q Consensus 569 v~~~~~~~~~~yr~~vryGy~d~~~-~~~~F~~~lv~~L~~FIr~E~~~~~~~~~~~----~~---~~~~~~~~s~~~~~ 640 (775)
++++++++|++|||++||||||..+ +++|||++|+++|++|||+|+.+.....+++ ++ +++.+...+.....
T Consensus 658 v~ri~~~~~~~yr~vvrYGY~D~~~~~~~dFe~~Lv~~l~~fi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (852)
T PLN00151 658 FRRVCPKDYHMFRCIARYGYKDVRKENHQAFEQLLIESLEKFIRREAQERALESDGNDDTDDEDSVTSSRVLIAPNGSVY 737 (852)
T ss_pred EEEcCCCCCCEEEEEEEEeecccccccchHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccccccCCCcccc
Confidence 9999999999999999999999976 7789999999999999999975321000000 00 11111100000000
Q ss_pred cccccCCcccccCCCCCCccCCCCCCchhh-hhhcccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCcE
Q 004072 641 LARSESDSKEESCSSSFPITGSCSKSPALQ-KLQSMYEQESPDLNYRPRVQFKLTDTKFKDLRVKEELLQLLEAKCAGVS 719 (775)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~eEL~~L~~A~eaGVv 719 (775)
+. +. ..++....++...+ +.++. +.+.+ ..+++++ .+.+++++||+++|++|||+||+
T Consensus 738 ----------~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~-----~~~~~~~~~El~~l~~a~e~Gv~ 796 (852)
T PLN00151 738 ----------SL-GV-PLLADYRLTSKPIPEASTSE-EVSPV---LPSSSMS-----SDEDQSLEYELSFIREAKESGVV 796 (852)
T ss_pred ----------cc-cc-cccccccccccccccccccc-ccccc---ccccccc-----cccCccHHHHHHHHHHHHHcCcE
Confidence 00 00 00000000000000 00000 00110 0122332 22357899999999999999999
Q ss_pred EEEeecEEEecCCCchhHHHHHHHHHHHHHhhcCCCCcccccCCCCEEEeeeEEEC
Q 004072 720 YIIGHSRIKAKWNAPFLKRFVINVAYSFLRKNSRSPAVFLNIPHICLIEVGINYYL 775 (775)
Q Consensus 720 YIlG~s~vkAr~~Ss~lKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvY~v 775 (775)
||+||++||||++|+|+||++|||+|+|||||||+|.++|+|||++|+||||+|||
T Consensus 797 yilG~~~v~a~~~S~~~Kk~~in~~Y~fLRkN~R~~~~~L~iP~~~lleVGm~Y~v 852 (852)
T PLN00151 797 YLLGHGDVRARKNSWFIKKLVINYFYAFLRKNCRRGIANLSVPHSNIMQVGMTYMV 852 (852)
T ss_pred EEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 99999999999999999999999999999999999999999999999999999997
No 4
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=1.6e-252 Score=2136.33 Aligned_cols=741 Identities=46% Similarity=0.851 Sum_probs=674.5
Q ss_pred cCCCchhhhHHHHHhhcceeecccCcchHHHHHHhcCCCCCCCCCcCceehhhHHHHHHHHHHhhhheeeEEEEecCCCC
Q 004072 3 ETKSPRQEFLLLAYQSFGIVFSDLSISPLYVYKSTFSGSLRHYQNEDAVFGAFSVIFWTLTLLSLFKYVIIVLNADDNGE 82 (775)
Q Consensus 3 ~~~~~~~~~~~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvlSLIfWtLtliv~iKYv~ivL~Adn~GE 82 (775)
+++-+++.++.|||||+|||||||||||||||+++|++. +.+++|||+|+||||||||||++++|||+||||||||||
T Consensus 38 ~~~~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~f~~~--~~~~~~~ilGvLSLIfWtLtLiv~iKYV~ivLrAdn~GE 115 (779)
T PLN00150 38 SSPNWPKVIMHLAYQSLGVVYGDLGTSPLYVFKSTFANV--GVKNNDDIIGALSLIIYTLTIIPLIKYVFIVLRANDNGE 115 (779)
T ss_pred cccccHHHHHHHHHhccCeEeCcCccchHHHHHHHhcCC--CCCCHHHhHhHHHHHHHHHHHHHHHhheeEEEEccCCCC
Confidence 456777888999999999999999999999999999742 268999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhcccCCCCCCCccccccccccCCCCCCCCCCCchhhHhhhhccchhhHHHHHHHHhhhhhhcCccccc
Q 004072 83 GGTFSLYALLCRHAKVGLLPNHQAADEELTTYHDPGYSSRNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTP 162 (775)
Q Consensus 83 GG~fALysLl~r~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTP 162 (775)
|||||||||+|||+|++++|||++.|+++++|+.+ +..+..++|++||+++.+|++++++|++|+||+||||||||
T Consensus 116 GGtfALysLl~r~aki~l~~~~~~~~~~~s~~~~~----~~~r~~~~k~~lE~~~~~~~~l~~l~l~G~~m~~gDgviTP 191 (779)
T PLN00150 116 GGSFALYSLLCRYCNISLLPNQHPTDVELTTYVVD----NMNRKTRIQRKLENSRVWQNVLLLIVLLGTCMVIGDGILTP 191 (779)
T ss_pred cchhhHHHHHhhhcccccCCccccchhhhhhcccc----cchhhhHHHHhhhcchHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999763 22344679999999999999999999999999999999999
Q ss_pred hhhhhhhhccceecccCCCcceEehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCcceeeecC
Q 004072 163 AISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALS 242 (775)
Q Consensus 163 AISVLSAveGl~v~~p~~~~~~Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~Aln 242 (775)
|||||||||||++..|++++++||||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||+|+|
T Consensus 192 AISVLSAVeGL~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~Aln 271 (779)
T PLN00150 192 SISVLSAVVGIKAASSGLDTNLVTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFN 271 (779)
T ss_pred chhhhhhhccccccCCCCCCCeehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCcceeeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhcccccchhccCCCccCCcccc
Q 004072 243 PYYIYKFFKYTGRDGWTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHA 322 (775)
Q Consensus 243 P~ya~~ff~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~ 322 (775)
|+|+++||++||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||++.+||||+
T Consensus 272 P~y~~~ff~~~~~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~~~npFf~ 351 (779)
T PLN00150 272 PLYIVSFFIRNGRQGWESLGGIVLCMTGTEAMFADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHMEDVNDPFYR 351 (779)
T ss_pred HHHHHHHHHhCCCceEEEecceeeeecchhhhhccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhheeeEEecC
Q 004072 323 SIPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRD 402 (775)
Q Consensus 323 ~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~ 402 (775)
++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++|||
T Consensus 352 ~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~ 431 (779)
T PLN00150 352 SLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRD 431 (779)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhhhchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHH
Q 004072 403 TNRLANAYGSACMALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPNGGWVALMFTTVFLAIMYV 482 (775)
Q Consensus 403 s~~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~i~~~iM~~ 482 (775)
|++||||||+||++||++||+|+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|++
T Consensus 432 s~~l~~AYGiAV~~vM~iTT~L~~~v~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~ 511 (779)
T PLN00150 432 TDEIGNAYGIAVVGVMIITTCLMTLVMIIIWRKHILLALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMYT 511 (779)
T ss_pred hHHHHHHhhhheehhhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhhhhcCCCChHHHHHhccCCCCCccCCcEEEEeCCCCCchhhHHhhhhhccccceEEEEEEEEEecccccC
Q 004072 483 WHYGSRKRYLYDLHNKVPMKWILAQGSSLGIVRVPGIGLLFTELANGVPPTFTHFLTNLPAFYQVVVFICVKTVPLPYVH 562 (775)
Q Consensus 483 W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~~vP~~~~h~v~~~~~lh~~~vfv~i~~~~vP~V~ 562 (775)
||||++++++++.+|++|++++.++.++.++.||||+|+|||++++|+|++|.||++|||++||++||+|||++|+|+||
T Consensus 512 W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~v~~~~~lhe~~Vfl~i~~~~vP~V~ 591 (779)
T PLN00150 512 WHYGTRKRYLYEMQHKVSVGWLLGLGPSLGLVRVPGIGLMYTDLAHGVPPLFSHFITNLPAIHSTVVFVCIKYLPVNTVP 591 (779)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHhhcccCCCcccCcEEEEEeCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccC
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCCCccEEEEEEEeeecccCCCchhhHHHHHHHHHHHHHhhhccCCCCCCCCCCcceeeeccccc-cccc
Q 004072 563 HKERYLIGRIGPKSYRMYRCIVRNGYKDVPNSGDDFENDIVMSIAEFIQMEAEGFTNLDAPVDGWLAVVRTSEKF-GKRL 641 (775)
Q Consensus 563 ~~eR~~v~~~~~~~~~~yr~~vryGy~d~~~~~~~F~~~lv~~L~~FIr~E~~~~~~~~~~~~~~~~~~~~~s~~-~~~~ 641 (775)
++|||+++++++++|++|||++||||||..++++|||++|+++|++|||+|+.+.+ . + ++++++..+++.. .++
T Consensus 592 ~~eR~~v~~i~~~~~r~~r~vvryGy~d~~~d~~dFE~~LvesL~~FIr~e~~~~~-~--~-~~~~~~~~~~~~~~~~~- 666 (779)
T PLN00150 592 QDERFLIRRIGPRAYSMYRCAARYGYTDLEKKDDNFEQLLIASLERFIEIESFREQ-S--D-LESMAASWTPEELMGEG- 666 (779)
T ss_pred hhheEEEEEecCCCceEEEEEEEEccCcCcccchHHHHHHHHHHHHHHHhhhhccc-c--c-ccccccccccccccccC-
Confidence 99999999999999999999999999999988899999999999999999975311 1 1 1122222111100 000
Q ss_pred ccccCCcccccCCCCCCccCCCCCCchhhhhhcccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCcEEE
Q 004072 642 ARSESDSKEESCSSSFPITGSCSKSPALQKLQSMYEQESPDLNYRPRVQFKLTDTKFKDLRVKEELLQLLEAKCAGVSYI 721 (775)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~eEL~~L~~A~eaGVvYI 721 (775)
+ +.... . .++ .+.+..+.++..+.+.+ ..++.++ ++.+++++||+++|++|||+||+||
T Consensus 667 -----~---~~~~~---~-~~~-~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~v~eEl~~L~~A~eaGVvYI 725 (779)
T PLN00150 667 -----N---SVGSG---L-FTQ-YDQSDINFATSQEWKRP---SSQEDSV-----SGHSSDTQDEVAFLNKCKEAGVVYI 725 (779)
T ss_pred -----C---ccccc---c-ccc-ccccccccccccccccc---ccccccc-----ccccccHHHHHHHHHHHHHcCcEEE
Confidence 0 00000 0 000 00000111111111111 1122332 2235789999999999999999999
Q ss_pred EeecEEEecCCCchhHHHHHHHHHHHHHhhcCCCCcccccCCCCEEEeeeEEEC
Q 004072 722 IGHSRIKAKWNAPFLKRFVINVAYSFLRKNSRSPAVFLNIPHICLIEVGINYYL 775 (775)
Q Consensus 722 lG~s~vkAr~~Ss~lKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvY~v 775 (775)
+||++||||++|+|+||++||++|+|||||||+|.++|+|||+||+||||+|||
T Consensus 726 lG~~~v~Ak~~Ss~~KK~vIN~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~V 779 (779)
T PLN00150 726 LGNNDVKARKDSGFFKKVIINYIYTFLRRISRDSEVVLNIPHECLLKVGMVYYV 779 (779)
T ss_pred eccceEEEcCCCcHHHHHHHHHHHHHHHHhccCCccccCCChHHeEEeceEEEC
Confidence 999999999999999999999999999999999999999999999999999997
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=1.2e-230 Score=1948.36 Aligned_cols=687 Identities=42% Similarity=0.773 Sum_probs=652.2
Q ss_pred HHHhhcceeecccCcchHHHHHHhcCCCCCCCCCcCceehhhHHHHHHHHHHhhhheeeEEEEecCCCCChHHHHHHHHh
Q 004072 14 LAYQSFGIVFSDLSISPLYVYKSTFSGSLRHYQNEDAVFGAFSVIFWTLTLLSLFKYVIIVLNADDNGEGGTFSLYALLC 93 (775)
Q Consensus 14 La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvlSLIfWtLtliv~iKYv~ivL~Adn~GEGG~fALysLl~ 93 (775)
|++||+|||||||||||||||+++|++ ..+++|||+|+||||||||||++++|||++||||||||||||||||||+|
T Consensus 1 La~~alGvVyGDIGTSPLY~~~~~f~~---~~~~~~~ilGvlSLIfWtL~livtiKYv~ivlrAdn~GEGGi~AL~sL~~ 77 (688)
T TIGR00794 1 LAFQSLGVIYGDIGTSPLYVLSSTFSG---GFPTERDIFGVLSLIFWLLTFIVSFKYIFIVLRADNNGEGGTFALYSLIG 77 (688)
T ss_pred CcceeeeeEeCcCcCCHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHHHhheeEEEEecCCCCchHHHHHHHHH
Confidence 589999999999999999999999974 36899999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCccccccccccCCCCCCCCCCCchhhHhhhhccchhhHHHHHHHHhhhhhhcCccccchhhhhhhhccc
Q 004072 94 RHAKVGLLPNHQAADEELTTYHDPGYSSRNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGL 173 (775)
Q Consensus 94 r~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLSAveGl 173 (775)
|++|.+.+|||++.|+++++|+.+.+++ .+++.++|+++|++++.|++++++|++|+||++|||+||||||||||||||
T Consensus 78 r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~le~~~~~~~~l~~~~l~G~al~~gDgviTPAiSVLSAVeGl 156 (688)
T TIGR00794 78 RYAKISARPVHQELDRAESSYSTKSPNL-LNKTTSLKTKLELSKFISKFLVIFGLLGGSMVMGDGVLTPAISVLSAVSGL 156 (688)
T ss_pred HhccccCCCcccchhhhhhhcccccccc-cchhhHHHHHhhhhHHHHHHHHHHHHHhHHHHhcccccccchhhhhhhccc
Confidence 9999999999999999999999887665 456778999999998889999999999999999999999999999999999
Q ss_pred eecccCCCcceEehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCcceeeecChHHHHHHHHhc
Q 004072 174 QVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPYYIYKFFKYT 253 (775)
Q Consensus 174 ~v~~p~~~~~~Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ya~~ff~~~ 253 (775)
+++.|++++++|+||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||+|+||+||++||.+|
T Consensus 157 ~v~~p~~~~~~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~ 236 (688)
T TIGR00794 157 EIVAPSLSDTWVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEY 236 (688)
T ss_pred cccCCCCCCCeehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHC
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhcccccchhccCCCccCCccccccCCCchhHHH
Q 004072 254 GRDGWTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHASIPDPLRWPVL 333 (775)
Q Consensus 254 g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~iP~~~~~P~~ 333 (775)
|..||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||+++|+|++||++
T Consensus 237 ~~~~~~~LG~V~L~iTGaEALyADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~~ 316 (688)
T TIGR00794 237 GTVGWVSLGGVVLSITGVEAMFADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEAIKNPFFLSIPDWALWPLF 316 (688)
T ss_pred CCceeeeccchhheeccHhhhhcccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcchhcCcHHHhCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhheeeEEecCchhHHhhhhch
Q 004072 334 VVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRDTNRLANAYGSA 413 (775)
Q Consensus 334 vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiA 413 (775)
++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||++||+|||+|
T Consensus 317 vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGia 396 (688)
T TIGR00794 317 IIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIA 396 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004072 414 CMALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPNGGWVALMFTTVFLAIMYVWHYGSRKRYLY 493 (775)
Q Consensus 414 V~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~ 493 (775)
|++||++||+|+++||+.+||||++++++|+++|+.+|++|||||+.||+||||+||++|++++++|++|+|||++++++
T Consensus 397 Vt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~ 476 (688)
T TIGR00794 397 VTGTFLVTTCLMTVVMTIVWKWNIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTWRYGRFRKLRR 476 (688)
T ss_pred hhhhhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChHHHHHhc-cCCCCCccCCcEEEEeCCCCCchhhHHhhhhhccccceEEEEEEEEEecccccCCCceEEEEee
Q 004072 494 DLHNKVPMKWILAQG-SSLGIVRVPGIGLLFTELANGVPPTFTHFLTNLPAFYQVVVFICVKTVPLPYVHHKERYLIGRI 572 (775)
Q Consensus 494 ~~~~~~~~~~~~~~~-~~~~~~rvpG~~vf~t~~~~~vP~~~~h~v~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~ 572 (775)
+.++++|++++++.. ++.+.+|+||+|+|||++++++|+++.||++|||++||++||+||+++|+|+||++||++++++
T Consensus 477 ~~~~~~~~~~~~~~l~~~~~l~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lhe~~vfltv~~~~~P~Vp~~eR~~v~~l 556 (688)
T TIGR00794 477 DHEHRVSISALIASLQPKPGLVRVPGIGIYYSNLVNGIPAVFGHLVTKFPSIHEVFIFLSLRTLDAPTVHNEERVQISQV 556 (688)
T ss_pred HhhcCCCHHHHHHHHhhcCCCcccCCeEEEeeCCccCCCHHHHHHHHhCCccceEEEEEEEEECCCCcCCcceEEEEEEE
Confidence 999999999998844 4444589999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEEEeeecccCCCchhhHHHHHHHHHHHHHhhhccCCCCCCCCCCcceeeecccccccccccccCCccccc
Q 004072 573 GPKSYRMYRCIVRNGYKDVPNSGDDFENDIVMSIAEFIQMEAEGFTNLDAPVDGWLAVVRTSEKFGKRLARSESDSKEES 652 (775)
Q Consensus 573 ~~~~~~~yr~~vryGy~d~~~~~~~F~~~lv~~L~~FIr~E~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 652 (775)
++++ |+|||++||||||+|+.+++|+++++++|++||+++.... .. +..
T Consensus 557 ~~~~-g~~rv~~~yGf~e~~~~~~~l~~~ii~~L~~fi~~~~~~~--~~-----------------------~~~----- 605 (688)
T TIGR00794 557 GPTE-GMYRCVIRYGFMDTPNEPKELAAHIVNSIVEFVEHECGFN--LN-----------------------NLE----- 605 (688)
T ss_pred cCCC-CEEEEEEEecCCcCCCcHHHHHHHHHHHHHHHHHHHhhhc--cc-----------------------ccc-----
Confidence 9754 8999999999999999999999999999999999864320 00 000
Q ss_pred CCCCCCccCCCCCCchhhhhhcccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCcEEEEeecEEEecCC
Q 004072 653 CSSSFPITGSCSKSPALQKLQSMYEQESPDLNYRPRVQFKLTDTKFKDLRVKEELLQLLEAKCAGVSYIIGHSRIKAKWN 732 (775)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~eEL~~L~~A~eaGVvYIlG~s~vkAr~~ 732 (775)
. . . + + ++ +.+.+||++++++++|+||+|++||++++++++
T Consensus 606 --~---~-----~-----------~---~--------~~--------~~~~eee~~~~~~~~~~gv~yflg~~~~~~~~~ 645 (688)
T TIGR00794 606 --E---L-----S-----------D---K--------RC--------RMPIEEIFENAMETKEHGYSYFMGEESLILKKR 645 (688)
T ss_pred --c---c-----c-----------c---c--------cc--------ccchHHHHHHHHHHhhcCCEEEeeceEEEECCC
Confidence 0 0 0 0 0 00 012578999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCCcccccCCCCEEEeeeEEEC
Q 004072 733 APFLKRFVINVAYSFLRKNSRSPAVFLNIPHICLIEVGINYYL 775 (775)
Q Consensus 733 Ss~lKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvY~v 775 (775)
|+++||..||++|.|||||||++...++|||+|++||||.||+
T Consensus 646 ~~~~~~~~I~~lf~~l~rn~~~~~~~~~iP~~rvvevG~~~~i 688 (688)
T TIGR00794 646 SPILRKIRVNHVFLFIRRNARRAPKVLEIPPDRLLEVGTVVEI 688 (688)
T ss_pred ccHHHHHHHHHHHHHHHHhccChhhheeCChhhEEEEeeEEEC
Confidence 9999999999999999999999999999999999999999996
No 6
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=2.7e-208 Score=1741.74 Aligned_cols=617 Identities=30% Similarity=0.549 Sum_probs=579.8
Q ss_pred CCchhhhHHHHHhhcceeecccCcchHHHHHHhcCCCCCCCCCcCceehhhHHHHHHHHHHhhhheeeEEEEecCCCCCh
Q 004072 5 KSPRQEFLLLAYQSFGIVFSDLSISPLYVYKSTFSGSLRHYQNEDAVFGAFSVIFWTLTLLSLFKYVIIVLNADDNGEGG 84 (775)
Q Consensus 5 ~~~~~~~~~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvlSLIfWtLtliv~iKYv~ivL~Adn~GEGG 84 (775)
|.+++++..++++|+|||||||||||||+|+++|+++++.++++|||+|++|||||||||++++|||+++||||||||||
T Consensus 3 ~~~~~~~~~l~l~aLGVVyGDIGTSPLY~~~~~f~~~~~~~~~~~~vlGvlSLIfWtL~livtiKYv~ivlrADn~GEGG 82 (622)
T PRK10745 3 TDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLILVVSIKYLTFVMRADNAGEGG 82 (622)
T ss_pred CccccchHHHHHhhcceEecCCCCChHHHHHHHhccCCCCCCChhHeehhhHHHHHHHHHHHHHHhheEEEecCCCCCch
Confidence 44555555699999999999999999999999998766667999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCccccccccccCCCCCCCCCCCchhhHhhhhccchhhHHHHHHHHhhhhhhcCccccchh
Q 004072 85 TFSLYALLCRHAKVGLLPNHQAADEELTTYHDPGYSSRNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAI 164 (775)
Q Consensus 85 ~fALysLl~r~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAI 164 (775)
|||||||++|+.+ ++.|.+++++|++|+||++|||+|||||
T Consensus 83 i~AL~aL~~~~~~---------------------------------------~~~~~~l~~lgl~Gaal~~gDgvITPAI 123 (622)
T PRK10745 83 ILTLMSLAGRNTS---------------------------------------ARTTSMLVIMGLIGGSFFYGEVVITPAI 123 (622)
T ss_pred HHHHHHHHhhhcc---------------------------------------cchhHHHHHHHHHHHHHHhhccccchhH
Confidence 9999999987642 2345578999999999999999999999
Q ss_pred hhhhhhccceecccCCCcceEehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCcceeeecChH
Q 004072 165 SVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPY 244 (775)
Q Consensus 165 SVLSAveGl~v~~p~~~~~~Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ 244 (775)
||||||||||+..|+++ ++|+||||+||++||++||+||+|||++|||||++||++||++|+|||++ ||+||+|+||+
T Consensus 124 SVLSAVEGL~v~~p~l~-~~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~-~P~Vl~AlnP~ 201 (622)
T PRK10745 124 SVMSAIEGLEIVAPQLD-TYIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA-NPEVLHALNPM 201 (622)
T ss_pred HHHHHhhcccccCCCCC-CccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc-CHHHHhHhCHH
Confidence 99999999999999996 59999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHhcCcceeeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhcccccchhccCCCccCCcccccc
Q 004072 245 YIYKFFKYTGRDGWTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHASI 324 (775)
Q Consensus 245 ya~~ff~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~i 324 (775)
|+++||.+||..||.+||+|+||+|||||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||+++
T Consensus 202 ya~~f~~~~~~~gf~~LG~V~L~vTGaEALYADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~ 281 (622)
T PRK10745 202 WAVHFFLEYKTVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLA 281 (622)
T ss_pred HHHHHHHhCCCceEEEecceeeeccchHHHhhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchhhcCcHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhheeeEEecCch
Q 004072 325 PDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRDTN 404 (775)
Q Consensus 325 P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~ 404 (775)
|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++++++||||+
T Consensus 282 P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~ 361 (622)
T PRK10745 282 PDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSS 361 (622)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHHHH
Q 004072 405 RLANAYGSACMALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPNGGWVALMFTTVFLAIMYVWH 484 (775)
Q Consensus 405 ~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~i~~~iM~~W~ 484 (775)
+||+|||+||++||++||+|++++++.+|||+++++++++++|+.+|+.||+||+.|++||||+|+++|++++++|++|+
T Consensus 362 ~La~AYGiAVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~iM~tW~ 441 (622)
T PRK10745 362 NLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFIVMTTWK 441 (622)
T ss_pred HHHHHhhhhheeHhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhhcCCCChHHHHHhccCCCCCccCCcEEEEeCCCCCchhhHHhhhhhccccceEEEEEEEEEecccccCCC
Q 004072 485 YGSRKRYLYDLHNKVPMKWILAQGSSLGIVRVPGIGLLFTELANGVPPTFTHFLTNLPAFYQVVVFICVKTVPLPYVHHK 564 (775)
Q Consensus 485 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~~vP~~~~h~v~~~~~lh~~~vfv~i~~~~vP~V~~~ 564 (775)
+||+++++++.++++++++|++..++.++.||||+|+|+|+..+++|+++.||+||||++||++||+||+++|+|+||++
T Consensus 442 ~G~~~~~~~~~~~~~~l~~f~~~l~~~~~~rvpG~avflt~~~~~vP~~l~h~lk~~~~lhe~~v~l~v~~~~~P~V~~~ 521 (622)
T PRK10745 442 SERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNV 521 (622)
T ss_pred HhHHHHHHHHHhcCCCHHHHHHHhhhcCCCccCeEEEEEeCCCCCCCHHHHHHhhcCCccceEEEEEEEEECCCcccCcc
Confidence 99999999999999999999998887777899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCCCccEEEEEEEeeecccCCCchhhHHHHHHHHHHHHHhhhccCCCCCCCCCCcceeeecccccccccccc
Q 004072 565 ERYLIGRIGPKSYRMYRCIVRNGYKDVPNSGDDFENDIVMSIAEFIQMEAEGFTNLDAPVDGWLAVVRTSEKFGKRLARS 644 (775)
Q Consensus 565 eR~~v~~~~~~~~~~yr~~vryGy~d~~~~~~~F~~~lv~~L~~FIr~E~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 644 (775)
||++++++++ ++|||++||||||+||.++.+++ .+.+ +
T Consensus 522 eR~~v~~l~~---g~~rv~~~yGf~e~~~i~~~L~~---------~~~~--g---------------------------- 559 (622)
T PRK10745 522 RRVQIEQLSP---TFWRVVASYGWRETPNVEEVFHR---------CGLE--G---------------------------- 559 (622)
T ss_pred cEEEEEEECC---CEEEEEEEecCCCCCCHHHHHHH---------HHhC--C----------------------------
Confidence 9999999997 79999999999999876532211 0000 0
Q ss_pred cCCcccccCCCCCCccCCCCCCchhhhhhcccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCcEEEEee
Q 004072 645 ESDSKEESCSSSFPITGSCSKSPALQKLQSMYEQESPDLNYRPRVQFKLTDTKFKDLRVKEELLQLLEAKCAGVSYIIGH 724 (775)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~eEL~~L~~A~eaGVvYIlG~ 724 (775)
. +++ -..++|.+||
T Consensus 560 --------------~------------------------------~~~----------------------~~~~s~fl~r 573 (622)
T PRK10745 560 --------------L------------------------------SCR----------------------MMETSFFMSH 573 (622)
T ss_pred --------------C------------------------------CCC----------------------ccceEEEEee
Confidence 0 000 0157899999
Q ss_pred cEEEecCCCc---hhHHHHHHHHHHHHHhhcCCCCcccccCCCCEEEeeeEEEC
Q 004072 725 SRIKAKWNAP---FLKRFVINVAYSFLRKNSRSPAVFLNIPHICLIEVGINYYL 775 (775)
Q Consensus 725 s~vkAr~~Ss---~lKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvY~v 775 (775)
+.++..++++ |-|| +|.||.||+++....+++|++|++|+|+-+|+
T Consensus 574 ~~l~~~~~~~m~~wr~~-----lF~~m~rna~~~~~~f~lP~~rvvelG~~v~i 622 (622)
T PRK10745 574 ESLILGKRPWYLRLRGK-----LFLLLQRNALRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred EEEEeCCCCCcHHHHHH-----HHHHHHHcCCCHHHHhCCCcccEEEEeeEEeC
Confidence 9999888887 6666 68999999999999999999999999999885
No 7
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.7e-199 Score=1657.08 Aligned_cols=534 Identities=44% Similarity=0.808 Sum_probs=522.4
Q ss_pred HHhhcceeecccCcchHHHHHHhcCCCCCCCCCcCceehhhHHHHHHHHHHhhhheeeEEEEecCCCCChHHHHHHHHhh
Q 004072 15 AYQSFGIVFSDLSISPLYVYKSTFSGSLRHYQNEDAVFGAFSVIFWTLTLLSLFKYVIIVLNADDNGEGGTFSLYALLCR 94 (775)
Q Consensus 15 a~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvlSLIfWtLtliv~iKYv~ivL~Adn~GEGG~fALysLl~r 94 (775)
|++|+|||||||||||||+|+++| ++++..+++|||+|++|||||||||++++|||+++|||||||||||||||||+||
T Consensus 1 a~~alGVVyGDIGTSPLY~~~~~f-~~~~~~~~~~~vlG~lSlIfWtL~liv~iKYv~ivlradn~GEGGi~aL~sL~~~ 79 (534)
T PF02705_consen 1 ALGALGVVYGDIGTSPLYVFKEIF-GSHGLPPTEENVLGVLSLIFWTLTLIVTIKYVLIVLRADNNGEGGIFALYSLIRR 79 (534)
T ss_pred CceeEEEEeCCCCCCHHHHHHHHH-hhcccCCcHHHHHHHHHHHHHHHHHHHHHheEEEEEEeCCCCChhHHHHHHHHHH
Confidence 689999999999999999999999 5556789999999999999999999999999999999999999999999999986
Q ss_pred hcccCCCCCCCccccccccccCCCCCCCCCCCchhhHhhhhccchhhHHHHHHHHhhhhhhcCccccchhhhhhhhccce
Q 004072 95 HAKVGLLPNHQAADEELTTYHDPGYSSRNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQ 174 (775)
Q Consensus 95 ~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAISVLSAveGl~ 174 (775)
..+ ++++.|..++++|++|+||++|||+||||||||||||||+
T Consensus 80 ~~~-------------------------------------~~~~~~~~l~~l~l~G~al~~gDgviTPAISVlSAvEGl~ 122 (534)
T PF02705_consen 80 FLK-------------------------------------SSKRRRWLLLILGLLGAALFYGDGVITPAISVLSAVEGLE 122 (534)
T ss_pred hhc-------------------------------------cchhHHHHHHHHHHHHhhhhhcceeecchHHHHHHhhhhh
Confidence 432 3566777789999999999999999999999999999999
Q ss_pred ecccCCCcceEehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCcceeeecChHHHHHHHHhcC
Q 004072 175 VQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPYYIYKFFKYTG 254 (775)
Q Consensus 175 v~~p~~~~~~Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ya~~ff~~~g 254 (775)
+..|+++ ++|+|+||+||++||++||+||+|||++|||||++||++||++|+|||++ +|+||+|+||+|+++||.+||
T Consensus 123 v~~p~~~-~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~-~p~Vl~A~nP~yai~f~~~~~ 200 (534)
T PF02705_consen 123 VATPSLE-PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQ-HPEVLKALNPYYAIRFFIRNG 200 (534)
T ss_pred ccCCCCc-ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhh-CHHHHHHhCHHHHHHHHHHcC
Confidence 9999999 69999999999999999999999999999999999999999999999999 599999999999999999999
Q ss_pred cceeeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhcccccchhccCCCccCCccccccCCCchhHHHH
Q 004072 255 RDGWTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHASIPDPLRWPVLV 334 (775)
Q Consensus 255 ~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~iP~~~~~P~~v 334 (775)
+.||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||+++|+|++||+++
T Consensus 201 ~~~~~~LG~V~L~~TGaEALyADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~i 280 (534)
T PF02705_consen 201 WIGFFVLGAVFLCVTGAEALYADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEAVSNPFFLLIPEWLLWPMVI 280 (534)
T ss_pred CchhhhcchHHHHHhhHHHHHhhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcchhhhHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhheeeEEecCchhHHhhhhchh
Q 004072 335 VATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRDTNRLANAYGSAC 414 (775)
Q Consensus 335 lAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiAV 414 (775)
+||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++++++||||++||+|||+||
T Consensus 281 lAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAV 360 (534)
T PF02705_consen 281 LATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAV 360 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004072 415 MALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPNGGWVALMFTTVFLAIMYVWHYGSRKRYLYD 494 (775)
Q Consensus 415 ~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~ 494 (775)
++||++||+|++++|+.+||||++++++|+++|+.+|+.||+||+.|++||||+|+++|++++++|++|+|||+++++++
T Consensus 361 t~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~ 440 (534)
T PF02705_consen 361 TGTMLITTILLFLVMRRVWKWPLWLALLFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIMYTWRRGRKLLYEFE 440 (534)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChHHHHHhccCCCCCccCCcEEEEeCCCCCchhhHHhhhhhccccceEEEEEEEEEecccccCCCceEEEEeecC
Q 004072 495 LHNKVPMKWILAQGSSLGIVRVPGIGLLFTELANGVPPTFTHFLTNLPAFYQVVVFICVKTVPLPYVHHKERYLIGRIGP 574 (775)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~~vP~~~~h~v~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~ 574 (775)
+++++++++++++.++.++.|+||+|+|+|+..+++|+++.|+++||+++||+++|+|++++|+|+||++||++++++++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~rvpG~aVFlt~~~~~vP~~l~h~l~~~~vlhe~~v~l~v~~~~vP~V~~~~R~~v~~l~~ 520 (534)
T PF02705_consen 441 RENKLPLDDFLELLEDQSIPRVPGTAVFLTRSPDGVPPALLHNLKHNKVLHERVVFLTVKTEPVPRVPPEERYEVERLGP 520 (534)
T ss_pred HhcCCCHHHHHHhhhhCCCceecceEEEEcCCCccCcHHHHHHHHhCCcccceEEEEEEEEeccCCCCCceEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCccEEEEEEEeeecc
Q 004072 575 KSYRMYRCIVRNGYKD 590 (775)
Q Consensus 575 ~~~~~yr~~vryGy~d 590 (775)
+++|||++||||||
T Consensus 521 --~g~~rv~~ryGf~e 534 (534)
T PF02705_consen 521 --DGFYRVTLRYGFME 534 (534)
T ss_pred --CCEEEEEEEecCCC
Confidence 28999999999998
No 8
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-193 Score=1583.49 Aligned_cols=618 Identities=33% Similarity=0.608 Sum_probs=582.4
Q ss_pred CCchhhhHHHHHhhcceeecccCcchHHHHHHhcCCCCCCCCCcCceehhhHHHHHHHHHHhhhheeeEEEEecCCCCCh
Q 004072 5 KSPRQEFLLLAYQSFGIVFSDLSISPLYVYKSTFSGSLRHYQNEDAVFGAFSVIFWTLTLLSLFKYVIIVLNADDNGEGG 84 (775)
Q Consensus 5 ~~~~~~~~~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvlSLIfWtLtliv~iKYv~ivL~Adn~GEGG 84 (775)
+++.+.+.++.+.|+|||||||||||||+++++|.+.++...++++|+|++||||||||+|||+|||+++||||||||||
T Consensus 9 ~~~~~~~~~l~lgAiGVVyGDIGTSPLYa~~e~~~~~~~~~v~~~~VlGvlSLi~WtLtlIVTiKYv~~vlRADN~GEGG 88 (627)
T COG3158 9 TSFKKSTKALTLGAIGVVYGDIGTSPLYALREALSGQGGLGVSRDEVLGVLSLIIWTLTLIVTIKYVLFVLRADNNGEGG 88 (627)
T ss_pred ccccccchhHhhheeeeEeccCCCChHHHHHHHhccCCCCCCCcceeeeHHHHHHHHHHHHHHHhhheeEEecCCCCCch
Confidence 44555678899999999999999999999999999876668899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCccccccccccCCCCCCCCCCCchhhHhhhhccchhhHHHHHHHHhhhhhhcCccccchh
Q 004072 85 TFSLYALLCRHAKVGLLPNHQAADEELTTYHDPGYSSRNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAI 164 (775)
Q Consensus 85 ~fALysLl~r~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~l~l~G~~m~~gDGviTPAI 164 (775)
|++|++|++|.++ +...++.++|++|+|+++|||+|||||
T Consensus 89 ilsL~aL~~~~~~----------------------------------------~~~~~l~~~g~iGaalf~GD~vITPAi 128 (627)
T COG3158 89 ILSLMALARRAAP----------------------------------------RRTALLIILGLIGAALFYGDAVITPAI 128 (627)
T ss_pred hhhHHHHHHhhcC----------------------------------------CCchhhhhHHHHhHHHHhcccccchhH
Confidence 9999999998753 345579999999999999999999999
Q ss_pred hhhhhhccceecccCCCcceEehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCcceeeecChH
Q 004072 165 SVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPY 244 (775)
Q Consensus 165 SVLSAveGl~v~~p~~~~~~Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ 244 (775)
|||||||||+++.|.++ ++|+|+|++||++||++||+||++||++|||||++||+++|..|++||.+ ||+||+|+|||
T Consensus 129 SVlSAvEGL~iv~p~~~-~~Vvpitl~IL~~LF~iQ~~GT~~Vg~~FGPVm~lWF~~l~~~Gl~~i~~-~p~IL~AiNP~ 206 (627)
T COG3158 129 SVLSAVEGLEIVTPALD-PYVVPITLIILVLLFLIQRFGTGRVGKLFGPVMLLWFLALAVLGLINIID-DPEILRAINPY 206 (627)
T ss_pred HHHHHhccccccCcccc-CccHHHHHHHHHHHHHHhcccchhhhhhhccHHHHHHHHHHHHHHHHHhc-CHHHHHHhChH
Confidence 99999999999999998 59999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhcCcceeeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhcccccchhccCCCccCCcccccc
Q 004072 245 YIYKFFKYTGRDGWTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHASI 324 (775)
Q Consensus 245 ya~~ff~~~g~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~i 324 (775)
||++|+.++|..||+.||+||||+||+||||||||||||+|||.||+++|+|||+|||+||||++++||++..||||.++
T Consensus 207 yAi~fl~~~~~~gf~vLGaVfLavTGaEALYADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~~ 286 (627)
T COG3158 207 YAVHFLLEEGFVGFFVLGAVFLAVTGAEALYADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLA 286 (627)
T ss_pred HHHHHHHhCCceEEEEeeeeeeeeccHHHHHhhccccCCccHHHHHHHHHHHHHHHHHccccceeccCcccccCcHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhheeeEEecCch
Q 004072 325 PDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRDTN 404 (775)
Q Consensus 325 P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~ 404 (775)
|+|++||+++|||+||||||||+|||+||++|||++||++||+||.|||+++.||||||.|||+|++++++++++||+|+
T Consensus 287 P~~aliP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~ 366 (627)
T COG3158 287 PDWALIPLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSS 366 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHHHH
Q 004072 405 RLANAYGSACMALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPNGGWVALMFTTVFLAIMYVWH 484 (775)
Q Consensus 405 ~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~i~~~iM~~W~ 484 (775)
+||+|||+|||++|++||+|++++++..|||+.+.+.++.++|+.+|..||+||+.|++||||+|+++|++++++|+||+
T Consensus 367 ~LAaAYGiAVTgtM~iTt~L~~~~~~~~w~w~~~~~~~~~~~f~~id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~tW~ 446 (627)
T COG3158 367 NLAAAYGIAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLAIDILFFAANLLKIHDGGWLPLLLAAVIFFVMWTWK 446 (627)
T ss_pred HHHHhhChheeehhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhhcCCCChHHHHHhccCCCCCccCCcEEEEeCCCCCchhhHHhhhhhccccceEEEEEEEEEecccccCCC
Q 004072 485 YGSRKRYLYDLHNKVPMKWILAQGSSLGIVRVPGIGLLFTELANGVPPTFTHFLTNLPAFYQVVVFICVKTVPLPYVHHK 564 (775)
Q Consensus 485 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~vf~t~~~~~vP~~~~h~v~~~~~lh~~~vfv~i~~~~vP~V~~~ 564 (775)
+|+++.+++..++++|+|.+++.+++.++.|||||++|+|+..+.+|.+++|++|||+++||++||+++++.|+|+|+++
T Consensus 447 ~g~~~l~~~~~~~~i~l~~fi~~l~~~~p~~v~gTAVfLt~~~~~vP~aLlhnlkhnkvlhe~nv~ltv~t~~~P~v~~~ 526 (627)
T COG3158 447 RGRQILFEKTRENGIPLDAFIASLEKHPPVRVPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPT 526 (627)
T ss_pred hhhHHHHHHhhcCCCCHHHHHHHHhhCCCcccCceEEEEcCCCCcCcHHHHHHhhhhheeeeeEEEEEEEecCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCCCccEEEEEEEeeecccCCCchhhHHHHHHHHHHHHHhhhccCCCCCCCCCCcceeeecccccccccccc
Q 004072 565 ERYLIGRIGPKSYRMYRCIVRNGYKDVPNSGDDFENDIVMSIAEFIQMEAEGFTNLDAPVDGWLAVVRTSEKFGKRLARS 644 (775)
Q Consensus 565 eR~~v~~~~~~~~~~yr~~vryGy~d~~~~~~~F~~~lv~~L~~FIr~E~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 644 (775)
||++++++++ +++|++++|||||+||.++ ..+.... ++
T Consensus 527 ~r~~ve~l~~---~f~rV~l~~Gfme~pnvp~------------~l~~~~~-----------------------~G---- 564 (627)
T COG3158 527 DRVKVEQLSD---DFVRVVLHFGFMETPNVPR------------ALRLCRK-----------------------KG---- 564 (627)
T ss_pred ceeeeeeccC---ceEEEEEEeeccCCCCHHH------------HHHHHhh-----------------------cC----
Confidence 9999999998 6999999999999998753 1111100 00
Q ss_pred cCCcccccCCCCCCccCCCCCCchhhhhhcccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCcEEEEee
Q 004072 645 ESDSKEESCSSSFPITGSCSKSPALQKLQSMYEQESPDLNYRPRVQFKLTDTKFKDLRVKEELLQLLEAKCAGVSYIIGH 724 (775)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~eEL~~L~~A~eaGVvYIlG~ 724 (775)
..|+. -...|.+|+
T Consensus 565 --------------------------------------------~~f~i----------------------m~tsFfl~r 578 (627)
T COG3158 565 --------------------------------------------LKFDI----------------------METSFFLSR 578 (627)
T ss_pred --------------------------------------------ceecc----------------------cceEEEEEe
Confidence 00000 024689999
Q ss_pred cEEEecCCCchhHHHHHHHHHHHHHhhcCCCCcccccCCCCEEEeeeEEE
Q 004072 725 SRIKAKWNAPFLKRFVINVAYSFLRKNSRSPAVFLNIPHICLIEVGINYY 774 (775)
Q Consensus 725 s~vkAr~~Ss~lKK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGMvY~ 774 (775)
+.++++++|++-+- -+-.|..|.||.-++...++||.+|++|+|---|
T Consensus 579 e~l~~~~~~g~~~w--~~~lfi~l~r~aa~~~~~F~lp~~rvvElGtqve 626 (627)
T COG3158 579 ESLIASKNSGMPRW--RDRLFIALARNAASPTDYFKLPPNRVVELGTQVE 626 (627)
T ss_pred eeeecCCCCCchHH--HHHHHHHHHHhcCCHHHhhCCCCCcEEEeeeeee
Confidence 99999999998653 2357899999999999999999999999995544
No 9
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=92.86 E-value=0.4 Score=55.16 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=44.1
Q ss_pred EehhHHHHHHHHHhhcccccchhhhh---hhhHHHHHHHHHhhhhhhhccccCcceeeecChHHHHHHHHhcCcceee-e
Q 004072 185 VVFLACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPYYIYKFFKYTGRDGWT-S 260 (775)
Q Consensus 185 Vv~is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ya~~ff~~~g~~g~~-~ 260 (775)
...+++++++++..+.-+|....+++ +.-+.++=++.+.+.|++.+.+.++. ..+|...+.-.. ++..+|. .
T Consensus 165 ~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~---~~~~~~~f~~~~-~~~~~~~~a 240 (501)
T TIGR00911 165 IRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVE---SLNPKNAFEGTE-TSAGGIVLA 240 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---ccCcccccCCCC-CcHHHHHHH
Confidence 34677888888899999997655543 33333322233344555544321111 122221110000 1223343 4
Q ss_pred cchhhhhccchhhhh
Q 004072 261 LAGLFLCTTGSEAMF 275 (775)
Q Consensus 261 LG~V~L~iTGaEALy 275 (775)
+..++.+.+|-|+.=
T Consensus 241 ~~~~~~af~G~e~~~ 255 (501)
T TIGR00911 241 FYSGIWAYGGWNYLN 255 (501)
T ss_pred HHHHHHHHHhHHHHh
Confidence 667788888988653
No 10
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=82.30 E-value=15 Score=41.07 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=102.5
Q ss_pred eEehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCcceeeecChHHHHHHHHhcCc--ceeeec
Q 004072 184 MVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPYYIYKFFKYTGR--DGWTSL 261 (775)
Q Consensus 184 ~Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ya~~ff~~~g~--~g~~~L 261 (775)
....++.++++.++.++-+|....++...-..++=++.+..+++..+..++......+++... ..+. .-...+
T Consensus 133 ~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 207 (466)
T COG0531 133 LIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP-----GGGSFGGILAAI 207 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc-----ccchHHHHHHHH
Confidence 457789999999999999999988887766665555555555555555543332222221111 0000 123355
Q ss_pred chhhhhccchhhh--hh-ccCCCCccceeeehhhhhhhHHHHhcccccchhccCCC-ccC-----Cccc---cccC-CCc
Q 004072 262 AGLFLCTTGSEAM--FA-DLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKNFS-AAP-----LSFH---ASIP-DPL 328 (775)
Q Consensus 262 G~V~L~iTGaEAL--yA-DlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~p~-~~~-----npFy---~~iP-~~~ 328 (775)
+.++.+.+|-|+. +| ++=+ .+|.|-.|-..-..-+.++-.+++.+....-|. +.. +|+. .... .+.
T Consensus 208 ~~~~~~f~G~e~~~~~a~E~kn-p~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~ 286 (466)
T COG0531 208 LLAFFAFTGFEAIATLAEEVKN-PKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWG 286 (466)
T ss_pred HHHHHHhhcHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHH
Confidence 6678889998864 33 2333 455566555544433444433444433333332 111 4443 2233 356
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCc
Q 004072 329 RWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPR 366 (775)
Q Consensus 329 ~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr 366 (775)
.+-+.+++.+++.-+..+.+.+.--+..+.-+-|++|+
T Consensus 287 ~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~ 324 (466)
T COG0531 287 AIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK 324 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 66666666666666667777777777777778899998
No 11
>TIGR00909 2A0306 amino acid transporter.
Probab=81.53 E-value=34 Score=38.43 Aligned_cols=168 Identities=16% Similarity=0.104 Sum_probs=80.1
Q ss_pred ehhHHHHHHHHHhhcccccchh---hhhhhhHHHHHHHHHhhhhhhhccccCcceeeecChHHHHHHHHhcCccee-eec
Q 004072 186 VFLACLVLIGHFVLQYRGTHRV---AFMFAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPYYIYKFFKYTGRDGW-TSL 261 (775)
Q Consensus 186 v~is~~ILv~LF~~Q~~GT~kv---g~~FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ya~~ff~~~g~~g~-~~L 261 (775)
..++++++++...+..+|.... ...+..+.++=++.+.+.|+.+. ++.-+..+.|. +..+| ..+
T Consensus 134 ~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~ 201 (429)
T TIGR00909 134 NLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF---ASNNYTPFMPM---------GFGGVGAAT 201 (429)
T ss_pred cHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC---cHHhcCCCCCC---------cHHHHHHHH
Confidence 3456777788888888886554 45666665554444444555432 23222222221 11121 123
Q ss_pred chhhhhccchhhhhh--ccCCCCccceeeehhhhhhhHHHHhcccccchhccC-C-C---ccCCccc----cccCCCchh
Q 004072 262 AGLFLCTTGSEAMFA--DLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSKN-F-S---AAPLSFH----ASIPDPLRW 330 (775)
Q Consensus 262 G~V~L~iTGaEALyA--DlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~~-p-~---~~~npFy----~~iP~~~~~ 330 (775)
...+.+.+|=|+.-. +-=+-.+|.+..|-..-+.=+ .+.|+.-....... | + ..++|+. +...++.-+
T Consensus 202 ~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~-~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR00909 202 ALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVV-TLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGL 280 (429)
T ss_pred HHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHH
Confidence 345667778887643 333445566776654322222 22244333222211 1 1 1223432 222233333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCc
Q 004072 331 PVLVVATLAAIVASQSVISATFSTVKQCYALGCFPR 366 (775)
Q Consensus 331 P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr 366 (775)
-+.+.+.++..-+..+.+.+.=-+....-+.|.+|+
T Consensus 281 ~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 281 ILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 344444444444444444444444444557899997
No 12
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=81.15 E-value=34 Score=39.23 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=26.4
Q ss_pred ecchhhhhccchhh--hhhccCCCCccceeeehhhhhhhHHHHhcccccchhc
Q 004072 260 SLAGLFLCTTGSEA--MFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLS 310 (775)
Q Consensus 260 ~LG~V~L~iTGaEA--LyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll 310 (775)
..++++.+.+|-|. .+|+==+-.+|.+..|=..-+.=+.++-.+++-++..
T Consensus 199 ~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~ 251 (474)
T TIGR03813 199 LAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAF 251 (474)
T ss_pred HHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456678889885 3444445556666665544333333333333434333
No 13
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=80.52 E-value=59 Score=36.95 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhhcccccchhhhh
Q 004072 188 LACLVLIGHFVLQYRGTHRVAFM 210 (775)
Q Consensus 188 is~~ILv~LF~~Q~~GT~kvg~~ 210 (775)
++++++.++..+.-+|+...+++
T Consensus 124 ~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 124 ACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566667888999999877765
No 14
>PRK10655 potE putrescine transporter; Provisional
Probab=80.39 E-value=55 Score=37.02 Aligned_cols=43 Identities=19% Similarity=0.089 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhhcccccchhhhh---hhhHHHHHHHHHhhhhhhh
Q 004072 187 FLACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYN 229 (775)
Q Consensus 187 ~is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~~Wf~~i~~~Giyn 229 (775)
.+++++++.+..+.-+|++..+++ ..-.+++-++.+...|++.
T Consensus 125 ~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~ 170 (438)
T PRK10655 125 LATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFW 170 (438)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677888999997766654 2333334444444555443
No 15
>TIGR00930 2a30 K-Cl cotransporter.
Probab=78.87 E-value=1.4e+02 Score=38.08 Aligned_cols=25 Identities=4% Similarity=0.123 Sum_probs=18.4
Q ss_pred EehhHHHHHHHHHhhcccccchhhh
Q 004072 185 VVFLACLVLIGHFVLQYRGTHRVAF 209 (775)
Q Consensus 185 Vv~is~~ILv~LF~~Q~~GT~kvg~ 209 (775)
+-.++++++++++.+--+|....++
T Consensus 203 ~~iia~i~l~ll~~In~~Gvk~~ak 227 (953)
T TIGR00930 203 IRIYGTVTVVVLLGISFAGMEWENK 227 (953)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4457778888888888889865544
No 16
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=77.89 E-value=10 Score=42.31 Aligned_cols=247 Identities=14% Similarity=0.080 Sum_probs=131.3
Q ss_pred ccchhhhhhhhccceec-ccCCCc-c-eEehhHHHHHHHHHhhcccccchhhhh---hhhHHH-HHHHHHhhhhhhhccc
Q 004072 160 LTPAISVLSSIDGLQVQ-LQNRHT-R-MVVFLACLVLIGHFVLQYRGTHRVAFM---FAPVVI-LWLLSTTGIGIYNVIK 232 (775)
Q Consensus 160 iTPAISVLSAveGl~v~-~p~~~~-~-~Vv~is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~-~Wf~~i~~~Giyni~~ 232 (775)
.+.+....++.+-+... .|++.+ + ....+++++++..+.+.-+|....+++ .+=+.+ +-++.+.+.|++...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~ 169 (426)
T PF13520_consen 90 LSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSF 169 (426)
T ss_dssp HHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred ccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecc
Confidence 33444444455544432 233322 1 245678888888999999998766654 333333 3445555666665533
Q ss_pred cCcce-----eeecChHHHHHHHHhcCcce-eeecchhhhhccchhhhhhccCCCCccceeeehhhhhhhHHHHhccccc
Q 004072 233 WNPRV-----YQALSPYYIYKFFKYTGRDG-WTSLAGLFLCTTGSEAMFADLGQFTAGSIKLAFCCIVFPCLVLQYMGQA 306 (775)
Q Consensus 233 ~~p~V-----l~AlnP~ya~~ff~~~g~~g-~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQa 306 (775)
+..- ....+|. +..+ +..+...+.+.+|-|+.=.-.+-.-+|.+..|=..-+.-+.++.-+..-
T Consensus 170 -~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k~ip~ai~~~~~~~~i~y~l~~~ 239 (426)
T PF13520_consen 170 -SGFNSLSFSLSTFFPS---------GWPGFLAGFSVAFFAFSGFEAIASLAEENKNKTIPRAIIISIIIVAIIYILFSI 239 (426)
T ss_dssp -CHHH----SHSCSSCS---------SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccccccccCCc---------cccchhhHHHHHHhhcccccccccccccccchhheeecccchhHHHHHHhhhhh
Confidence 1111 1112221 1111 4456677888999998655555554566665544333333333333333
Q ss_pred chhccCCC----ccCC------ccccc-cCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCc
Q 004072 307 AFLSKNFS----AAPL------SFHAS-IPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARW 375 (775)
Q Consensus 307 A~ll~~p~----~~~n------pFy~~-iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~ 375 (775)
++...-|. ..+| .+++. -.++..+.+.+++.++..-+-.+.+.+.--++.+.-+-|.+|+ +..|++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~k- 317 (426)
T PF13520_consen 240 ALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPK-WFAKVNK- 317 (426)
T ss_dssp HHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSG-GGGTTSS-
T ss_pred eeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhh-hhhhccc-
Confidence 33333332 1112 22222 2468888888888888888777777777777777888899992 2333332
Q ss_pred ccCeeeechhhHHHHHHhh-eee--EEe---cCchhHHhhhhchhhhHHHHHH
Q 004072 376 VRGQVYIPEINWVLMILSL-AVT--VGF---RDTNRLANAYGSACMALTFVST 422 (775)
Q Consensus 376 ~~GQIYIP~vNw~Lmi~~i-~vv--~~F---~~s~~l~~AYGiAV~~~M~iTT 422 (775)
+| .|..--+++..+. ++. ..| ++-+.+.+.+.+......+++.
T Consensus 318 -~~---~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (426)
T PF13520_consen 318 -FG---TPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVI 366 (426)
T ss_dssp -SS---SCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred -cC---CceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2555444433332 222 223 2335667766666666666653
No 17
>PRK15049 L-asparagine permease; Provisional
Probab=77.29 E-value=31 Score=40.16 Aligned_cols=22 Identities=18% Similarity=-0.019 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhhcccccchhhh
Q 004072 188 LACLVLIGHFVLQYRGTHRVAF 209 (775)
Q Consensus 188 is~~ILv~LF~~Q~~GT~kvg~ 209 (775)
++.++++++..+.-+|....+.
T Consensus 147 ~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 147 FALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788888888766554
No 18
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=76.85 E-value=24 Score=40.44 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHH
Q 004072 466 GWVALMFTTVFLAIMYVWHYGSRKR 490 (775)
Q Consensus 466 GW~pl~ia~i~~~iM~~W~~G~~~~ 490 (775)
-|.+++++++++..+..|....++.
T Consensus 454 ny~~~~~~~~~~~~~~~~~~~~r~~ 478 (482)
T TIGR00907 454 NYAVVVFAGVLAISLVYWKYKGRKE 478 (482)
T ss_pred ChHhHHHHHHHHHHHHHheEeceee
Confidence 5999999888888888786543333
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=67.27 E-value=1.1e+02 Score=35.19 Aligned_cols=45 Identities=7% Similarity=-0.206 Sum_probs=30.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcc
Q 004072 323 SIPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRV 367 (775)
Q Consensus 323 ~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ 367 (775)
...+|..+.+.+.+.++..-+..+.+.++=-+..+.-+-|.+|+.
T Consensus 273 ~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~ 317 (468)
T TIGR03810 273 MVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKY 317 (468)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 344555555555566666666666666666677777788999965
No 20
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=67.23 E-value=2e+02 Score=34.26 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=26.7
Q ss_pred EehhHHHHHHHHHhhcccccchhhh---hhhhHHHHHHHHHhhhhhhh
Q 004072 185 VVFLACLVLIGHFVLQYRGTHRVAF---MFAPVVILWLLSTTGIGIYN 229 (775)
Q Consensus 185 Vv~is~~ILv~LF~~Q~~GT~kvg~---~FgPIm~~Wf~~i~~~Giyn 229 (775)
...+++++++++..+--+|+...++ .+.-+.++-++.+.+.|+..
T Consensus 161 ~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~ 208 (557)
T TIGR00906 161 PDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTK 208 (557)
T ss_pred chHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 3456677777777888899766654 34444444444445555543
No 21
>PRK11021 putative transporter; Provisional
Probab=66.03 E-value=2e+02 Score=32.22 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=21.6
Q ss_pred EehhHHHHHHHHHhhcccccchhhhhhh
Q 004072 185 VVFLACLVLIGHFVLQYRGTHRVAFMFA 212 (775)
Q Consensus 185 Vv~is~~ILv~LF~~Q~~GT~kvg~~Fg 212 (775)
..++++++++++..+.-+|.+..+++-.
T Consensus 115 ~~~~~~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 115 LLLAELLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3567788888889999999888876543
No 22
>PRK10746 putative transport protein YifK; Provisional
Probab=58.89 E-value=1.8e+02 Score=33.60 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHH
Q 004072 466 GWVALMFTTVFLAIMYVWHYGSRKRY 491 (775)
Q Consensus 466 GW~pl~ia~i~~~iM~~W~~G~~~~~ 491 (775)
.......+.+++.+++.+....+.-+
T Consensus 427 ~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 427 TRMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677788888887777776654443
No 23
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=57.78 E-value=73 Score=34.64 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=39.7
Q ss_pred hHHhhhhchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHhh
Q 004072 405 RLANAYGSACMALTFVSTLLTSLVIYFVWNQSLFLALLYVLFFGS----IEIIYLSSA 458 (775)
Q Consensus 405 ~l~~AYGiAV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~----ie~~f~sa~ 458 (775)
+-=..||.+|..+.++.++-++..+..+.+.+.|.+++|.++++. +|-..+|+.
T Consensus 13 ~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~ 70 (301)
T PF14362_consen 13 NKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSI 70 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334578999999999999999998888899887777666655554 555555543
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=55.94 E-value=1.4e+02 Score=34.31 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhhcccccchhhhh---hhhHHHHHHHHHhhhhhhhccccCcceeeecChHHHHHH--HHhcCcce-eeec
Q 004072 188 LACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYNVIKWNPRVYQALSPYYIYKF--FKYTGRDG-WTSL 261 (775)
Q Consensus 188 is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~~Wf~~i~~~Giyni~~~~p~Vl~AlnP~ya~~f--f~~~g~~g-~~~L 261 (775)
++.++++++..+.-+|....|++ +.=+-++..+.+-++|+.-+...++. ...++.+.... +..++..| +..+
T Consensus 138 ~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (458)
T PRK10249 138 WAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGG--EKASIDNLWRYGGFFATGWNGLILSL 215 (458)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCChhhccCCCCCCCCcHHHHHHHH
Confidence 35666777777888888765542 33333444555555555543321211 01111111000 00123333 2445
Q ss_pred chhhhhccchhhh--hhccCCCCccceeeehh
Q 004072 262 AGLFLCTTGSEAM--FADLGQFTAGSIKLAFC 291 (775)
Q Consensus 262 G~V~L~iTGaEAL--yADlGHFg~~~Ir~aw~ 291 (775)
..++.+.+|-|+. .|+=-+-.+|.|-.|=.
T Consensus 216 ~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 216 AVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 5667788899865 66656666777665543
No 25
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=54.54 E-value=91 Score=35.33 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhhcccccchhhhhh
Q 004072 187 FLACLVLIGHFVLQYRGTHRVAFMF 211 (775)
Q Consensus 187 ~is~~ILv~LF~~Q~~GT~kvg~~F 211 (775)
.+++++++++..+.-+|.+..+++-
T Consensus 123 ~~~~~~~~~~~~ln~~g~~~~~~i~ 147 (442)
T TIGR00908 123 LAALVFYIVFIGINILGVGEAAKLE 147 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4556666777788888887776653
No 26
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=53.38 E-value=13 Score=41.09 Aligned_cols=89 Identities=26% Similarity=0.567 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhhcccccchhhh--hhhhHHHHHHHHHhhhhhh---------------------hccccCcceeeecChH
Q 004072 188 LACLVLIGHFVLQYRGTHRVAF--MFAPVVILWLLSTTGIGIY---------------------NVIKWNPRVYQALSPY 244 (775)
Q Consensus 188 is~~ILv~LF~~Q~~GT~kvg~--~FgPIm~~Wf~~i~~~Giy---------------------ni~~~~p~Vl~AlnP~ 244 (775)
.+|+.++=.|+-| +|-.+||+ +.|-+.+.|.++-...++. .++||-|+..
T Consensus 212 mt~Iti~Qc~~ye-R~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~------ 284 (372)
T KOG3145|consen 212 MTVITILQCFFYE-RGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAY------ 284 (372)
T ss_pred HHHHHHHHHHhhh-hcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh------
Confidence 3444444444444 45667776 6666667776554443332 2344444432
Q ss_pred HHHHHHHhcCcceeeecchhhhhccchhh-----------------hhhccCCCCcccee
Q 004072 245 YIYKFFKYTGRDGWTSLAGLFLCTTGSEA-----------------MFADLGQFTAGSIK 287 (775)
Q Consensus 245 ya~~ff~~~g~~g~~~LG~V~L~iTGaEA-----------------LyADlGHFg~~~Ir 287 (775)
.=+.|...+|| +.|+|+|=+|||-| .|+|+|-||-.=+.
T Consensus 285 ---mN~tRKSt~gw-sIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vS 340 (372)
T KOG3145|consen 285 ---MNFTRKSTVGW-SIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVS 340 (372)
T ss_pred ---hcceecccccc-ccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHH
Confidence 22456677888 78999999999965 68999999865443
No 27
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=49.77 E-value=3.9e+02 Score=30.82 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=48.8
Q ss_pred ecchhhhhccchhhh--hhccCCCCccceeeehhhhhhhHHHHhcccccchhcc--CCCc---cCCcccccc----CCCc
Q 004072 260 SLAGLFLCTTGSEAM--FADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAFLSK--NFSA---APLSFHASI----PDPL 328 (775)
Q Consensus 260 ~LG~V~L~iTGaEAL--yADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ll~--~p~~---~~npFy~~i----P~~~ 328 (775)
.+..++.+.+|-|+. .|.==+-.+|+|..|-.. +.-...+-|+-....+.. .+++ .++||-... -++.
T Consensus 216 ~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~-~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 294 (469)
T PRK11049 216 GFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINS-IPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAA 294 (469)
T ss_pred HHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHH-HHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhH
Confidence 344456677788864 344345566666666532 222333344433332221 1222 235653211 1122
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcc
Q 004072 329 RWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRV 367 (775)
Q Consensus 329 ~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ 367 (775)
..-+.+++.++.+-+..+.+.+.=-+....-+-|.+|+.
T Consensus 295 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~ 333 (469)
T PRK11049 295 ASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA 333 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 222233333333444444444444455555578999953
No 28
>PRK10238 aromatic amino acid transporter; Provisional
Probab=49.53 E-value=1.4e+02 Score=34.21 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=26.4
Q ss_pred cchhhhhccchhh--hhhccCCCCccceeeehhhhhhhHHHHhccc
Q 004072 261 LAGLFLCTTGSEA--MFADLGQFTAGSIKLAFCCIVFPCLVLQYMG 304 (775)
Q Consensus 261 LG~V~L~iTGaEA--LyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~G 304 (775)
++.++.+.+|-|+ ..|+=-+=.+|.+-.|=.. +.-.+.+.|++
T Consensus 206 ~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~-~~~~i~~~y~~ 250 (456)
T PRK10238 206 MAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ-VIYRILIFYIG 250 (456)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHH-HHHHHHHHHHH
Confidence 5556778889987 4455456667777776532 33444455654
No 29
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=49.43 E-value=3.1e+02 Score=31.13 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=26.7
Q ss_pred ehhHHHHHHHHHhhcccccc---hhhhhhhhHHHHHHHHHhhhhhhhc
Q 004072 186 VFLACLVLIGHFVLQYRGTH---RVAFMFAPVVILWLLSTTGIGIYNV 230 (775)
Q Consensus 186 v~is~~ILv~LF~~Q~~GT~---kvg~~FgPIm~~Wf~~i~~~Giyni 230 (775)
..+++++++.+..+.-+|.+ |+...+.=+.++=++.+.++|++.+
T Consensus 128 ~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~ 175 (445)
T PRK11357 128 KFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWF 175 (445)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566667777788888875 4444444444444445555666543
No 30
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=48.15 E-value=5e+02 Score=30.15 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=18.7
Q ss_pred CCcCCCchhhhHHHHHhhcceeecccC
Q 004072 1 MVETKSPRQEFLLLAYQSFGIVFSDLS 27 (775)
Q Consensus 1 ~~~~~~~~~~~~~La~~alGVVyGDIG 27 (775)
|.||++++-.+..+..-++|.|.| .+
T Consensus 1 ~~~~~~~~l~~~~l~~~~~~~vig-~~ 26 (496)
T PRK15238 1 MMSNTKKKLSLIGLILMIFTSVFG-FA 26 (496)
T ss_pred CCCcccCeeeHHHHHHHHHHHHHh-CC
Confidence 566666666677788888888888 44
No 31
>PRK10580 proY putative proline-specific permease; Provisional
Probab=46.66 E-value=2.5e+02 Score=32.11 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=19.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhHH
Q 004072 464 NGGWVALMFTTVFLAIMYVWHYGSR 488 (775)
Q Consensus 464 ~GGW~pl~ia~i~~~iM~~W~~G~~ 488 (775)
.+.++.+.++.+.+.+.+.++.-.+
T Consensus 423 p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 423 PDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577788888888888888876543
No 32
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=45.91 E-value=1.1e+02 Score=35.16 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=75.3
Q ss_pred ehhHHHHHHHHHhhcccccchhhhhh---hhHHHHHHHHHhhhhhhhccccCcceee-ecChHHHHHHHHhcCcceee--
Q 004072 186 VFLACLVLIGHFVLQYRGTHRVAFMF---APVVILWLLSTTGIGIYNVIKWNPRVYQ-ALSPYYIYKFFKYTGRDGWT-- 259 (775)
Q Consensus 186 v~is~~ILv~LF~~Q~~GT~kvg~~F---gPIm~~Wf~~i~~~Giyni~~~~p~Vl~-AlnP~ya~~ff~~~g~~g~~-- 259 (775)
..++++++++++.+.-+|....+++- .-+.++=++.+.+.|+... +++.+. -++|... ......|.
T Consensus 130 ~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~---~~~~~~~~~~~~~~-----p~~~~~~~~~ 201 (473)
T TIGR00905 130 ILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWF---KLDLFTADFWGHDV-----PSLGSVFSQV 201 (473)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CchhcccccCccCC-----CcccchHHHH
Confidence 34566666677889999987665433 3222222233333444321 222221 0111100 00011121
Q ss_pred --ecchhhhhccchhhh---hhccCCCCccceeeehh------hhhhhHHHHhcccccchhccCCCccCCcc-----ccc
Q 004072 260 --SLAGLFLCTTGSEAM---FADLGQFTAGSIKLAFC------CIVFPCLVLQYMGQAAFLSKNFSAAPLSF-----HAS 323 (775)
Q Consensus 260 --~LG~V~L~iTGaEAL---yADlGHFg~~~Ir~aw~------~~V~P~L~L~Y~GQaA~ll~~p~~~~npF-----y~~ 323 (775)
.+...+.+.+|-|+. ..++=+ +|.+-.|-. .+.|-+..+.+.|.... ++-.+..+|+ ...
T Consensus 202 ~~~~~~~~~af~G~e~~~~~a~E~k~--~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~--~~l~~~~~p~~~~~~~~~ 277 (473)
T TIGR00905 202 KNTMLVTLWVFIGIEGAVVSSGRAKN--KSDVGKATVLGTLGALVIYILITLLSLGVLPQ--QELANLPNPSMAAVLEMI 277 (473)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHHHHHHHHHhCcCH--HHHhhCCCchHHHHHHHH
Confidence 233367778888875 223433 444443322 22333333333321100 0001234553 233
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcc
Q 004072 324 IPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRV 367 (775)
Q Consensus 324 iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ 367 (775)
..++...-+.+.+.+++.-+..+.+.+.--+..+.-+-|.+||.
T Consensus 278 ~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~ 321 (473)
T TIGR00905 278 VGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKI 321 (473)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 34444443333344444444555666666666666688999963
No 33
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=45.44 E-value=3.8e+02 Score=31.49 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=25.4
Q ss_pred chhhhhccchhhh--hhccCCCCccceeeehhhhhhhHHHHhcccccch
Q 004072 262 AGLFLCTTGSEAM--FADLGQFTAGSIKLAFCCIVFPCLVLQYMGQAAF 308 (775)
Q Consensus 262 G~V~L~iTGaEAL--yADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA~ 308 (775)
-+++.+.+|-|+. .|+==+-.+|.+-.|=...+.=+.++.++|--++
T Consensus 201 ~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i 249 (507)
T TIGR00910 201 VAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSI 249 (507)
T ss_pred HHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677998865 5554455666666554443333444444444333
No 34
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=45.22 E-value=1.6e+02 Score=33.50 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHhhcccccchhhhh
Q 004072 187 FLACLVLIGHFVLQYRGTHRVAFM 210 (775)
Q Consensus 187 ~is~~ILv~LF~~Q~~GT~kvg~~ 210 (775)
.+.+++++++..+.-+|++..+++
T Consensus 127 ~~~~~~~~~~~~ln~~gvk~~~~i 150 (445)
T PRK10644 127 ITCVVVLWIFVLLNIVGPKMITRV 150 (445)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHH
Confidence 345666667778888898766653
No 35
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=44.79 E-value=5.2e+02 Score=29.42 Aligned_cols=44 Identities=5% Similarity=0.025 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHhhcccccchhhhhhhh---HHHHHHHHHhhhhhhhc
Q 004072 187 FLACLVLIGHFVLQYRGTHRVAFMFAP---VVILWLLSTTGIGIYNV 230 (775)
Q Consensus 187 ~is~~ILv~LF~~Q~~GT~kvg~~FgP---Im~~Wf~~i~~~Giyni 230 (775)
.+++++++++..+.-+|+...+.+--. +.++-++.+-++|+..+
T Consensus 128 ~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~ 174 (452)
T TIGR01773 128 LFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAI 174 (452)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777888898777655433 22333333344455433
No 36
>PRK11387 S-methylmethionine transporter; Provisional
Probab=44.43 E-value=2.5e+02 Score=32.36 Aligned_cols=21 Identities=24% Similarity=-0.023 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhcccccchhhh
Q 004072 189 ACLVLIGHFVLQYRGTHRVAF 209 (775)
Q Consensus 189 s~~ILv~LF~~Q~~GT~kvg~ 209 (775)
.+++++++..+.-+|....+.
T Consensus 133 ~~~~~~~~~~in~~gvk~~~~ 153 (471)
T PRK11387 133 CLLFCALIFGLNVVSTRFFAE 153 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 334445566777788766553
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=44.29 E-value=4.9e+02 Score=29.86 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHH
Q 004072 467 WVALMFTTVFLAIMYVWHYGSR 488 (775)
Q Consensus 467 W~pl~ia~i~~~iM~~W~~G~~ 488 (775)
-++..++.+++..++.+++-.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~ 464 (478)
T TIGR00913 443 FFEAYLSLPIFIALYIGHKVYK 464 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777776654
No 38
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=40.24 E-value=26 Score=37.30 Aligned_cols=31 Identities=16% Similarity=0.544 Sum_probs=25.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHhHHHHH
Q 004072 461 KIPNGGWVALMFTTVFLAIMYVWHYGSRKRY 491 (775)
Q Consensus 461 Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~ 491 (775)
|=.+|||+.++.+.++..+..+|++--+.+.
T Consensus 257 ~~i~~G~isiv~Gliiv~iLii~N~kvEv~A 287 (304)
T COG4059 257 VSIQGGWISIVAGLIIVLILIIWNRKVEVKA 287 (304)
T ss_pred cccccchhhhHHHHHHHHHHHHhcchhhhhh
Confidence 3348999999999999999999998655543
No 39
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=38.67 E-value=28 Score=40.41 Aligned_cols=91 Identities=21% Similarity=0.297 Sum_probs=59.4
Q ss_pred HcCCCCcceEEecCCcccC----eeeechhhHHHHHHhheeeEEecCchhHHhhhhchhhhHHHHHHHHHHHHHH-----
Q 004072 360 ALGCFPRVKVVHKARWVRG----QVYIPEINWVLMILSLAVTVGFRDTNRLANAYGSACMALTFVSTLLTSLVIY----- 430 (775)
Q Consensus 360 ~Lg~fPr~ki~hTS~~~~G----QIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~----- 430 (775)
+.|-.||+-+...=++..| |+|+|.+= ++ .+-=|---=|-++-.+=-.+++|++..+||++...=.-
T Consensus 225 sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~L---iV-ilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS 300 (459)
T KOG3643|consen 225 STGNYSRLSLSFQLRRNIGFYILQTYIPSTL---IV-ILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS 300 (459)
T ss_pred ccccceeEEEEEEEEeeccEEEEeeecchhh---hh-HHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc
Confidence 4799999999999888888 99999751 11 11111112245555666789999999999998765221
Q ss_pred HHhhhhhHHHHHHHHHHHH-HHHHH
Q 004072 431 FVWNQSLFLALLYVLFFGS-IEIIY 454 (775)
Q Consensus 431 ~~w~~~~~~~~~~~~~F~~-ie~~f 454 (775)
++.-.-+++..+|+.+|++ +|-++
T Consensus 301 YVKAiDiYL~vCFvfVF~sLLEYA~ 325 (459)
T KOG3643|consen 301 YVKAIDVYLGVCFVFVFLSLLEYAA 325 (459)
T ss_pred ceeeehhhhhHHHHHHHHHHHHHHH
Confidence 1233345666777777776 45443
No 40
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=35.71 E-value=1.4e+02 Score=30.85 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 004072 465 GGWVALMFTTVFLAIMYVWHY 485 (775)
Q Consensus 465 GGW~pl~ia~i~~~iM~~W~~ 485 (775)
.+|+-+++|++.+.+-+-|++
T Consensus 179 ~~~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999988876654
No 41
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=27.42 E-value=27 Score=38.38 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=24.4
Q ss_pred ccCCCCccceeeehhhhhhhHHHHhcccccc-----hhccCCCccC
Q 004072 277 DLGQFTAGSIKLAFCCIVFPCLVLQYMGQAA-----FLSKNFSAAP 317 (775)
Q Consensus 277 DlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQaA-----~ll~~p~~~~ 317 (775)
+=++|||.+||++|-. ..||+. =||+|||-+.
T Consensus 171 gk~Y~GRG~iQlsWNy---------NYG~ag~alg~dLL~~Pe~V~ 207 (286)
T KOG4742|consen 171 GKSYYGRGPIQLSWNY---------NYGAAGKALGLDLLRNPELVA 207 (286)
T ss_pred CCcccccCcccccccc---------cccHhHhhcCchhhcCcchhc
Confidence 4479999999999988 345543 4788998665
No 42
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=27.05 E-value=1e+03 Score=27.44 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.2
Q ss_pred EehhHHHHHHHHHhhcccccchhhhh
Q 004072 185 VVFLACLVLIGHFVLQYRGTHRVAFM 210 (775)
Q Consensus 185 Vv~is~~ILv~LF~~Q~~GT~kvg~~ 210 (775)
...++.+++++...+.-+|++..+++
T Consensus 144 ~~~~~~~~~~~~~~in~~g~k~~~~i 169 (475)
T TIGR03428 144 AVLLGSVLLVLTTVINCIGVEWMSRV 169 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566667777888888897766553
No 43
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.93 E-value=75 Score=25.62 Aligned_cols=29 Identities=21% Similarity=0.590 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhcCCCChH
Q 004072 474 TVFLAIMYVWHYGSRKRYLYDLHNKVPMK 502 (775)
Q Consensus 474 ~i~~~iM~~W~~G~~~~~~~~~~~~~~~~ 502 (775)
.+++.....|.|-+++|.++|...++|++
T Consensus 19 ~~~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHccCcc
Confidence 33444445555555555555555566654
No 44
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.88 E-value=16 Score=37.45 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=47.0
Q ss_pred HHHHHhCCcEEEEeecEEEecCCCchhHHHHHHHHHHH---HHhhcCCCCcccccCCCCEEEeee
Q 004072 710 LLEAKCAGVSYIIGHSRIKAKWNAPFLKRFVINVAYSF---LRKNSRSPAVFLNIPHICLIEVGI 771 (775)
Q Consensus 710 L~~A~eaGVvYIlG~s~vkAr~~Ss~lKK~vIn~~Y~F---LRkNcR~~~~~L~IPh~~LlEVGM 771 (775)
+++++++|+--++=.. .+.++=..+..|+=|||+|.- .++++|.....+++|.++.+-||-
T Consensus 55 ~~e~k~~gi~v~vvSN-n~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 55 LAELKEAGIKVVVVSN-NKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred HHHHHhcCCEEEEEeC-CCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcc
Confidence 5567788875444332 666666788999999988765 367888899999999999999883
No 45
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=21.25 E-value=78 Score=36.31 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=20.8
Q ss_pred eeecchhhhhccchh--hhhhccCCCCccceeeehh
Q 004072 258 WTSLAGLFLCTTGSE--AMFADLGQFTAGSIKLAFC 291 (775)
Q Consensus 258 ~~~LG~V~L~iTGaE--ALyADlGHFg~~~Ir~aw~ 291 (775)
|..+.-.+.+.+|-| +.+|+==.=.+|+|..|=.
T Consensus 203 ~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 203 FAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred HHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 445666678888988 3455544555666655543
Done!