Query 004072
Match_columns 775
No_of_seqs 253 out of 764
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.6 0.055 1.9E-06 59.5 17.6 98 185-289 130-237 (511)
2 3gia_A Uncharacterized protein 96.4 0.014 4.8E-07 63.0 11.5 105 159-275 98-208 (444)
3 3l1l_A Arginine/agmatine antip 95.7 0.066 2.3E-06 57.7 12.5 100 166-274 105-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 21.6 34 0.0012 31.7 1.6 21 745-767 30-50 (124)
5 3luu_A Uncharacterized protein 17.9 42 0.0014 29.6 1.4 17 744-760 34-50 (101)
6 2rdd_B UPF0092 membrane protei 16.8 1.6E+02 0.0053 21.7 4.0 31 465-495 1-31 (37)
7 2l6n_A Uncharacterized protein 16.6 51 0.0018 30.9 1.6 14 745-758 37-50 (132)
8 1nrp_R Receptor based peptide 15.7 50 0.0017 22.4 0.9 16 307-322 5-20 (26)
9 2jln_A MHP1; hydantoin, transp 15.0 6.6E+02 0.023 27.7 10.5 295 186-521 144-482 (501)
10 3ghp_A Cellulosomal scaffoldin 14.7 45 0.0015 33.9 0.7 13 231-243 46-58 (227)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.58 E-value=0.055 Score=59.53 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=54.0
Q ss_pred EehhHHHHHHHHHhhcccccchhhhhhhhH----HHHHHHHHhhhhhhhccccCccee----eecChHHHHHHHHhcCcc
Q 004072 185 VVFLACLVLIGHFVLQYRGTHRVAFMFAPV----VILWLLSTTGIGIYNVIKWNPRVY----QALSPYYIYKFFKYTGRD 256 (775)
Q Consensus 185 Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPI----m~~Wf~~i~~~Giyni~~~~p~Vl----~AlnP~ya~~ff~~~g~~ 256 (775)
...+++++++++..+.-+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456778888888899999988777654332 222344555667666554333221 1222211 1234
Q ss_pred eeeecchhhhhccchhhhhhccCCCC--ccceeee
Q 004072 257 GWTSLAGLFLCTTGSEAMFADLGQFT--AGSIKLA 289 (775)
Q Consensus 257 g~~~LG~V~L~iTGaEALyADlGHFg--~~~Ir~a 289 (775)
+|..+..++.+.+|-|+.-.=-+-.- +|.+..|
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 56677888999999998644333332 3444444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.44 E-value=0.014 Score=63.05 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=55.6
Q ss_pred cccchhhhhhhhccceecccCCCcc-eEehhHHHHHHHHHhhcccccchhhhh---hhhHHHHHHHHHhhhhhhhccccC
Q 004072 159 VLTPAISVLSSIDGLQVQLQNRHTR-MVVFLACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYNVIKWN 234 (775)
Q Consensus 159 viTPAISVLSAveGl~v~~p~~~~~-~Vv~is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~~Wf~~i~~~Giyni~~~~ 234 (775)
+++.|....+..+=+....|...++ +...+++++++++..+.-+|....+++ +..+.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 4455555555444443333332221 234567888888888888998766654 44544444444555555543 4
Q ss_pred cceeee-cChHHHHHHHHhcCcce-eeecchhhhhccchhhhh
Q 004072 235 PRVYQA-LSPYYIYKFFKYTGRDG-WTSLAGLFLCTTGSEAMF 275 (775)
Q Consensus 235 p~Vl~A-lnP~ya~~ff~~~g~~g-~~~LG~V~L~iTGaEALy 275 (775)
|+-+.. ++|. +..| +..+...+.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCCc---------chHHHHHHHHHHHHHHHhHHHHH
Confidence 443322 2332 1111 123344567889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.74 E-value=0.066 Score=57.67 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=47.4
Q ss_pred hhhhhccceecccCCCcce-EehhHHHHHHHHHhhcccccchhhhh---hhhHHHHHHHHHhhhhhhhccccCccee-ee
Q 004072 166 VLSSIDGLQVQLQNRHTRM-VVFLACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYNVIKWNPRVY-QA 240 (775)
Q Consensus 166 VLSAveGl~v~~p~~~~~~-Vv~is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~~Wf~~i~~~Giyni~~~~p~Vl-~A 240 (775)
..+..+=++...|...+++ ...+++++++++..+--+|.+..+++ +.++.++=++.+.+.|+. ..+|+.+ ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~ 181 (445)
T 3l1l_A 105 VVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAA 181 (445)
T ss_dssp HHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC
T ss_pred HHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccc
Confidence 3333333433344433221 33466777777778888888777665 444444333334444443 3355543 33
Q ss_pred cChHHHHHHHHhcCcce-eeecchhhhhccchhhh
Q 004072 241 LSPYYIYKFFKYTGRDG-WTSLAGLFLCTTGSEAM 274 (775)
Q Consensus 241 lnP~ya~~ff~~~g~~g-~~~LG~V~L~iTGaEAL 274 (775)
++|.-. .+..+ +..+..++.+.+|-|+.
T Consensus 182 ~~~~~~------~~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 182 WNVSGL------GTFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp -----------------HHHHHHHHHHTTTTTTHH
T ss_pred cCccCC------ccHHHHHHHHHHHHHHHHhHHHH
Confidence 444210 00111 22344456778898875
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=21.64 E-value=34 Score=31.68 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=14.8
Q ss_pred HHHHHhhcCCCCcccccCCCCEE
Q 004072 745 YSFLRKNSRSPAVFLNIPHICLI 767 (775)
Q Consensus 745 Y~FLRkNcR~~~~~L~IPh~~Ll 767 (775)
|.|||.||+.+...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 5899999999765443 44444
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=17.87 E-value=42 Score=29.58 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=10.4
Q ss_pred HHHHHHhhcCCCCcccc
Q 004072 744 AYSFLRKNSRSPAVFLN 760 (775)
Q Consensus 744 ~Y~FLRkNcR~~~~~L~ 760 (775)
=|.|||.||+.+...-.
T Consensus 34 ~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 34 TFEHLRVECPCAECKGH 50 (101)
T ss_dssp EHHHHHHTCCCC-----
T ss_pred CHHHHHhhCCChhhcCc
Confidence 37899999997765433
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=16.82 E-value=1.6e+02 Score=21.66 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004072 465 GGWVALMFTTVFLAIMYVWHYGSRKRYLYDL 495 (775)
Q Consensus 465 GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~ 495 (775)
|||..++.-++++.+||..-.-..+|.+.+.
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555555555666544333333333333
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=16.55 E-value=51 Score=30.85 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=11.7
Q ss_pred HHHHHhhcCCCCcc
Q 004072 745 YSFLRKNSRSPAVF 758 (775)
Q Consensus 745 Y~FLRkNcR~~~~~ 758 (775)
|.|||.||+.+...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 68999999987654
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=15.66 E-value=50 Score=22.44 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=0.0
Q ss_pred chhccCCCccCCcccc
Q 004072 307 AFLSKNFSAAPLSFHA 322 (775)
Q Consensus 307 A~ll~~p~~~~npFy~ 322 (775)
+||++||++.-.||+.
T Consensus 5 sfllrnpndkyepfwe 20 (26)
T 1nrp_R 5 SFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhcCCCcccCcccc
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=15.00 E-value=6.6e+02 Score=27.72 Aligned_cols=295 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHHhhcccccchhhhhhhhHHHHHHHHHhhhhhhhccccCc--ceeeecChHHHHHHHHhcCcceeeecch
Q 004072 186 VFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNP--RVYQALSPYYIYKFFKYTGRDGWTSLAG 263 (775)
Q Consensus 186 v~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Giyni~~~~p--~Vl~AlnP~ya~~ff~~~g~~g~~~LG~ 263 (775)
+.+.+..++.+... -+|-+++-+++.=...+.++....+-++-+.+.+. +-+.+..|. ..+|-.+.+
T Consensus 144 v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~----------~~~~~f~~a 212 (501)
T 2jln_A 144 LWIVIFGAIQVVTT-FYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGE----------NPGMPFSTA 212 (501)
T ss_dssp HHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCS----------SCCSCHHHH
T ss_pred HHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCc----------cchHHHHHH
Q ss_pred hhhhccchhhh---hhccCCCCcccee---------------eehhhhhhhHHHHhcccccchhccCCCccCCccccccC
Q 004072 264 LFLCTTGSEAM---FADLGQFTAGSIK---------------LAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHASIP 325 (775)
Q Consensus 264 V~L~iTGaEAL---yADlGHFg~~~Ir---------------~aw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFy~~iP 325 (775)
+.+++...=++ -+|...|.|++-. -+++....|..++.-+|=..-.....++.....-..++
T Consensus 213 i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~ 292 (501)
T 2jln_A 213 IMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVG 292 (501)
T ss_dssp HHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhc
Q ss_pred CCchhHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeechhhHHHHHHhheeeEEecCc-
Q 004072 326 DPLRWPVLVV-ATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRDT- 403 (775)
Q Consensus 326 ~~~~~P~~vl-AtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s- 403 (775)
.+...-.+.+ .+++.-+-+..+....+|......++ +||. +|.--|.+.++++.+++..-.+
T Consensus 293 ~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~--~~~~--------------i~~~~~~~i~~vi~~~i~~~~~~ 356 (501)
T 2jln_A 293 GVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST--FPRV--------------FTFKTGVIVSAVVGLLMMPWQFA 356 (501)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH--STTT--------------CCHHHHHHHHHHHHHHTCGGGTH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--Cccc--------------cchhHHHHHHHHHHHHHHHHHhH
Q ss_pred hhHHhhhhchhhhHHHHHHHHHHHHHHHH---------------------hhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004072 404 NRLANAYGSACMALTFVSTLLTSLVIYFV---------------------WNQSLFLALLYVLFFGSIEIIYLSSACMKI 462 (775)
Q Consensus 404 ~~l~~AYGiAV~~~M~iTT~L~~~v~~~~---------------------w~~~~~~~~~~~~~F~~ie~~f~sa~l~Ki 462 (775)
+.+.+-=.+--....-++.+++.=..+.. |+|.-+.+.+.-......
T Consensus 357 ~~f~~FL~~lg~~l~P~~gI~l~Dy~i~rr~~~~~~~l~~~~g~y~y~~g~n~~a~~a~~~G~~~~~~------------ 424 (501)
T 2jln_A 357 GVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVSFL------------ 424 (501)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHTTSTTCCCHHHHTBSSSTTCTBTTBCHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCChHHhhCCCCccccCCCCCHHHHHHHHHHHHHHHH------------
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhHHHH-HhhhhcCCCChHHHHHhccCCCCCccCCcEE
Q 004072 463 PNGGWVALMFTTVFLAIMYVWHYGSRKR-YLYDLHNKVPMKWILAQGSSLGIVRVPGIGL 521 (775)
Q Consensus 463 ~~GGW~pl~ia~i~~~iM~~W~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~v 521 (775)
++-++..++.++..+.|.--.-...+ .++-.+...--+.+.+......+..-||++.
T Consensus 425 --~~~~~~~~g~~va~v~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (501)
T 2jln_A 425 --TPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDYLRPIGPVAPADESATAN 482 (501)
T ss_dssp --CGGGHHHHHHHHHHHHHHHHHHHHTTTSCSCCGGGGGHHHHHSCCC------------
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHhCchhhhhcccccccccchhccccCCCcccCCCccc
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=14.73 E-value=45 Score=33.90 Aligned_cols=13 Identities=54% Similarity=1.017 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 004072 231 IKWNPRVYQALSP 243 (775)
Q Consensus 231 ~~~~p~Vl~AlnP 243 (775)
++|||.||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
Done!