Query 004072
Match_columns 775
No_of_seqs 253 out of 764
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 13:21:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004072.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004072hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 19.0 37 0.0027 21.7 2.5 20 466-485 5-24 (27)
2 d2yvxa3 f.57.1.1 (A:276-448) M 18.7 23 0.0017 32.4 2.1 120 296-428 12-133 (173)
3 d1or7a2 a.177.1.1 (A:-1-111) S 13.5 49 0.0036 26.8 2.8 24 733-756 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.8 47 0.0034 25.1 -0.1 39 297-337 16-54 (57)
5 d1krha2 c.25.1.2 (A:206-338) B 6.3 1.7E+02 0.012 23.8 3.4 37 348-384 17-53 (133)
6 d1jl0a_ d.156.1.1 (A:) S-adeno 6.0 79 0.0057 31.5 1.2 25 701-725 124-148 (325)
7 d2a65a1 f.54.1.1 (A:5-513) Na( 5.8 3.5E+02 0.025 27.2 6.4 26 468-493 406-431 (509)
8 d1iray2 b.1.1.4 (Y:102-204) Ty 5.4 1.3E+02 0.0096 24.0 2.1 29 560-588 53-81 (103)
9 d2bnma1 a.35.1.3 (A:6-76) Hydr 4.9 81 0.0059 24.0 0.3 12 80-91 40-51 (71)
10 d1f2qa2 b.1.1.4 (A:86-174) IgE 4.6 1.9E+02 0.014 21.9 2.5 40 556-595 40-79 (89)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.00 E-value=37 Score=21.72 Aligned_cols=20 Identities=40% Similarity=0.813 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 004072 466 GWVALMFTTVFLAIMYVWHY 485 (775)
Q Consensus 466 GW~pl~ia~i~~~iM~~W~~ 485 (775)
||+.++.-+.-.+-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 79888888888888888854
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=18.73 E-value=23 Score=32.41 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=70.6
Q ss_pred hHHHHhcccc--cchhccCCCccCCccccccCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecC
Q 004072 296 PCLVLQYMGQ--AAFLSKNFSAAPLSFHASIPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKA 373 (775)
Q Consensus 296 P~L~L~Y~GQ--aA~ll~~p~~~~npFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS 373 (775)
|-|+++.+|+ +|+++.+-|+.-+-+-. =..|.|+ ++-.+.-++||+.. ++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4455555555 56777665544332211 2356776 67788888999874 888999999643211 11
Q ss_pred CcccCeeeechhhHHHHHHhheeeEEecCchhHHhhhhchhhhHHHHHHHHHHHH
Q 004072 374 RWVRGQVYIPEINWVLMILSLAVTVGFRDTNRLANAYGSACMALTFVSTLLTSLV 428 (775)
Q Consensus 374 ~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v 428 (775)
+...-++.+-.+|=+.+...+.....+++...++-+=|++...+|++.+++=+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~l 133 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456667777666655554444456655666666666666666666554443
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=13.51 E-value=49 Score=26.75 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCC
Q 004072 733 APFLKRFVINVAYSFLRKNSRSPA 756 (775)
Q Consensus 733 Ss~lKK~vIn~~Y~FLRkNcR~~~ 756 (775)
.+|+.+++-|.++.++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999998764
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.75 E-value=47 Score=25.09 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=25.1
Q ss_pred HHHHhcccccchhccCCCccCCccccccCCCchhHHHHHHH
Q 004072 297 CLVLQYMGQAAFLSKNFSAAPLSFHASIPDPLRWPVLVVAT 337 (775)
Q Consensus 297 ~L~L~Y~GQaA~ll~~p~~~~npFy~~iP~~~~~P~~vlAt 337 (775)
++++--++=+.|+..+.. ++.-|.++|+.+.|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 333334455566666643 344599999999998776544
No 5
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=6.28 E-value=1.7e+02 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeech
Q 004072 348 ISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPE 384 (775)
Q Consensus 348 ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~ 384 (775)
||-..|+++++.+.+.-+++.++|..+...--+|--+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~e 53 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQ 53 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHH
Confidence 3444556666666665555666666655444444443
No 6
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.01 E-value=79 Score=31.51 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHhCCcEEEEeec
Q 004072 701 LRVKEELLQLLEAKCAGVSYIIGHS 725 (775)
Q Consensus 701 ~~v~eEL~~L~~A~eaGVvYIlG~s 725 (775)
.+.++|.+.|++....|..|++|+-
T Consensus 124 ~sf~~Ev~~L~~~f~~G~aY~~G~~ 148 (325)
T d1jl0a_ 124 RNFQEEIEFLNAIFPNGAGYCMGRM 148 (325)
T ss_dssp SSHHHHHHHHHTTCSSEEEEEESCT
T ss_pred CCHHHHHHHHHHhCCCCceEEecCC
Confidence 5689999999999999999999975
No 7
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.85 E-value=3.5e+02 Score=27.22 Aligned_cols=26 Identities=19% Similarity=0.561 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004072 468 VALMFTTVFLAIMYVWHYGSRKRYLY 493 (775)
Q Consensus 468 ~pl~ia~i~~~iM~~W~~G~~~~~~~ 493 (775)
+.+.+.+.+.++...|.||.++..+.
T Consensus 406 ~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 406 IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 46677788889999999998877654
No 8
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.42 E-value=1.3e+02 Score=24.00 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=0.0
Q ss_pred ccCCCceEEEEeecCCCccEEEEEEEeee
Q 004072 560 YVHHKERYLIGRIGPKSYRMYRCIVRNGY 588 (775)
Q Consensus 560 ~V~~~eR~~v~~~~~~~~~~yr~~vryGy 588 (775)
++..+..+.|..+...+.|.|+|++++.|
T Consensus 53 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 81 (103)
T d1iray2 53 FSGVKDRLIVMNVAEKHRGNYTCHASYTY 81 (103)
T ss_dssp EEEETTEEEESSCCGGGCEEEEEEEEEEE
T ss_pred EEecCCEEEEcccccccCcEEEEEEEECc
No 9
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=4.95 E-value=81 Score=23.96 Aligned_cols=12 Identities=58% Similarity=1.013 Sum_probs=0.0
Q ss_pred CCCChHHHHHHH
Q 004072 80 NGEGGTFSLYAL 91 (775)
Q Consensus 80 ~GEGG~fALysL 91 (775)
|||||-+.|..|
T Consensus 40 ngeggeltltql 51 (71)
T d2bnma1 40 NGEGGELTLTQL 51 (71)
T ss_dssp TTTCTTCBHHHH
T ss_pred cCCCceeeHHHH
No 10
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.60 E-value=1.9e+02 Score=21.87 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred ecccccCCCceEEEEeecCCCccEEEEEEEeeecccCCCc
Q 004072 556 VPLPYVHHKERYLIGRIGPKSYRMYRCIVRNGYKDVPNSG 595 (775)
Q Consensus 556 ~~vP~V~~~eR~~v~~~~~~~~~~yr~~vryGy~d~~~~~ 595 (775)
..++.-....++.+..+...+-|.|+|.++.++.+.....
T Consensus 40 ~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~ 79 (89)
T d1f2qa2 40 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEP 79 (89)
T ss_dssp EECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred eccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeee
Done!