BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004073
(775 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 56/72 (77%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
PE RCPISL+LM DPVI+++GQTYER I+KWL GH TCPK+Q+ L H LTPNY +K
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 340 GLIASWCEMNGV 351
LIA WCE NG+
Sbjct: 66 SLIALWCESNGI 77
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+ L IS +LM +P I SG TY+R IE+ L P T+ L L PN +K
Sbjct: 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMK 163
Query: 340 GLIASWCEMNG 350
+I ++ + NG
Sbjct: 164 EVIDAFIQENG 174
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+ L IS +LM +P I SG TY+R IE+ L P T+ L L PN +K
Sbjct: 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 265
Query: 340 GLIASWCEMNG 350
+I ++ NG
Sbjct: 266 EVIDAFISENG 276
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+ L IS +LM +P I SG TY+R IE+ L P T+ L L PN +K
Sbjct: 3 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 62
Query: 340 GLIASWCEMNG 350
+I ++ NG
Sbjct: 63 EVIDAFISENG 73
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+ L IS +LM +P I SG TY+R IE+ L P T+ L L PN +K
Sbjct: 11 PDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMK 70
Query: 340 GLIASWCEMN 349
+I ++ + N
Sbjct: 71 EVIDAFIQEN 80
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 252 HAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEK 311
H F ++ ++ + N R S P+E R P+ LM DPV + SG +R I +
Sbjct: 3 HKFAEKVEEIVAKNARAEIDYSDA----PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILR 58
Query: 312 WLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWC 346
L + T P +Q L L P +K I +W
Sbjct: 59 HLLNS-PTDPFNRQTLTESMLEPVPELKEQIQAWM 92
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICI-----EKWLSDGHSTCPKTQQKLPHLCLTPN 335
EE+ CPI L+L+ +PV ++ R CI +DG CP + P L PN
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77
Query: 336 YCVKGLI 342
V ++
Sbjct: 78 LHVANIV 84
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+E R P+ LM DPV + SG +R I + L + T P +Q L L P +K
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-PTDPFNRQMLTESMLEPVPELK 70
Query: 340 GLIASWC 346
I +W
Sbjct: 71 EQIQAWM 77
>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 357
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Query: 148 GRKFNDSNDNNELESFHQAATRLGITSSRAALTERRALKKLIERARVEEDKRKESIVA-- 205
G+++N ++ E++ FH A + ++++++R VE+ +IVA
Sbjct: 168 GKRYNTDRESEEMKFFHDVA---------------KTMEEVMKRENVEK-----AIVAGP 207
Query: 206 ------YLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLS 259
+ L KY +L + +I+D G T I+ D V+ N A + QL
Sbjct: 208 GFVKEDFYKFLKEKYPELAKKVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLV 267
Query: 260 KLCSFNFRPNN 270
+ N NN
Sbjct: 268 EKVLENIARNN 278
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSD 315
E C + L+ + +PVII G + + CI +W D
Sbjct: 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWED 48
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICI-----EKWLSDGHSTCP 321
EE+ CPI L+L+ P+ + G ++ + C+ + L G S+CP
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCP 63
>pdb|4H2I|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Iii
(Closed) In Complex With Ampcp
Length = 532
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 352 SVPDSPPDSLDLNYWRLALSEESTNSKSNEIV------RSCKLKE 390
S+P+ P D+N WR+ L + ST IV +SC+ +E
Sbjct: 288 SIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRE 332
>pdb|4H2B|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Baicalin
Length = 547
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 352 SVPDSPPDSLDLNYWRLALSEESTNSKSNEIV------RSCKLKE 390
S+P+ P D+N WR+ L + ST IV +SC+ +E
Sbjct: 311 SIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRE 355
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICI-----EKWLS-DGHSTCP 321
EE+ CPI L+L+ +P+ + G + R CI E S G S+CP
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCP 57
>pdb|4H2F|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form I (Open)
In Complex With Adenosine
pdb|4H2G|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Adenosine
Length = 546
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 352 SVPDSPPDSLDLNYWRLALSEESTNSKSNEIV------RSCKLKE 390
S+P+ P D+N WR+ L + ST IV +SC+ +E
Sbjct: 310 SIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRE 354
>pdb|4H1Y|P Chain P, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Psb11552
Length = 546
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 352 SVPDSPPDSLDLNYWRLALSEESTNSKSNEIV------RSCKLKE 390
S+P+ P D+N WR+ L + ST IV +SC+ +E
Sbjct: 310 SIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRE 354
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 280 PEELRCPISLQLMYDPVII-ASGQTYERICIEKWL--SDGHSTCPKTQQ 325
P+EL C I +M D V+I G +Y CI L SD H TCP Q
Sbjct: 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH-TCPTCHQ 58
>pdb|4H1S|A Chain A, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
pdb|4H1S|B Chain B, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
Length = 530
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 352 SVPDSPPDSLDLNYWRLALSEESTNSKSNEIV------RSCKLKE 390
S+P+ P D+N WR+ L ST IV +SC+ +E
Sbjct: 288 SIPEDPSIKADINKWRIKLDNYSTQELGKTIVYLDGSSQSCRFRE 332
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCP 321
L CPI L+L+ +PV + + C+ K L+ G S CP
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP 62
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 280 PEELRCPISLQLMYDPVII-ASGQTYERICIEKWL--SDGHSTCPKTQQK 326
P+EL C I +M D V+I G +Y CI L SD H TCP Q
Sbjct: 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH-TCPTCHQN 61
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 29/128 (22%)
Query: 113 GCQILEIVNELETIAFSLDPSEKQVGDDIIALL-----QQGRKFNDSNDNNELESFHQAA 167
GC E VN+ A + E++ G DI++L+ + G ++ H A
Sbjct: 48 GC--CEKVNKASVSADEVYRLERETGHDILSLVLLLEQKSGCRY-----------VHYGA 94
Query: 168 TRLGITSSRAALTERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDND 227
T I + AL RRAL + E+AR D+ L + RKY L EM+
Sbjct: 95 TSNDIIDTAWALLIRRALAAVKEKARAVGDQ--------LASMARKYKTL---EMVGRTH 143
Query: 228 SQGSTPCS 235
Q + P +
Sbjct: 144 GQWAEPIT 151
>pdb|2VK9|A Chain A, Crystal Structure Of The Catalytic Domain Of Alpha-Toxin
From Clostridium Novyi
Length = 551
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 356 SPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTI 402
S P+ +D NYW A+ E N K +++ + K M+ VP E+ I
Sbjct: 300 SKPNGMDSNYWEAAIFEAIANEK--KLMNNYPYKYMEQVPSEIKERI 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,938,444
Number of Sequences: 62578
Number of extensions: 886518
Number of successful extensions: 1961
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1937
Number of HSP's gapped (non-prelim): 53
length of query: 775
length of database: 14,973,337
effective HSP length: 106
effective length of query: 669
effective length of database: 8,340,069
effective search space: 5579506161
effective search space used: 5579506161
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)