Query 004073
Match_columns 775
No_of_seqs 464 out of 2686
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 17:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.4E-26 5.1E-31 287.0 30.9 280 425-710 12-313 (2102)
2 PLN03200 cellulose synthase-in 99.9 1.3E-25 2.7E-30 280.5 29.4 282 426-715 446-770 (2102)
3 KOG0166 Karyopherin (importin) 99.9 9.4E-25 2E-29 242.1 24.3 281 427-712 110-396 (514)
4 KOG4224 Armadillo repeat prote 99.9 2.7E-24 5.8E-29 223.6 17.2 278 427-713 127-409 (550)
5 KOG4224 Armadillo repeat prote 99.9 1.9E-23 4.1E-28 217.3 19.7 272 432-712 172-449 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 2.5E-22 5.5E-27 207.4 17.1 278 428-710 116-399 (526)
7 KOG0166 Karyopherin (importin) 99.9 4.8E-21 1.1E-25 212.7 22.3 279 428-710 68-352 (514)
8 PF04564 U-box: U-box domain; 99.9 4.8E-22 1E-26 168.3 5.1 72 279-350 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.8 8.5E-21 1.8E-25 196.2 14.0 277 426-708 71-355 (526)
10 PF05804 KAP: Kinesin-associat 99.8 3.5E-17 7.7E-22 191.2 25.8 278 427-712 291-610 (708)
11 PF05804 KAP: Kinesin-associat 99.7 2.4E-16 5.1E-21 184.3 20.3 216 487-711 263-481 (708)
12 smart00504 Ubox Modified RING 99.7 8.2E-17 1.8E-21 132.5 5.3 63 282-345 1-63 (63)
13 KOG2122 Beta-catenin-binding p 99.6 5.5E-15 1.2E-19 174.3 16.1 265 446-712 317-604 (2195)
14 KOG4199 Uncharacterized conser 99.6 2.4E-13 5.1E-18 141.5 23.8 273 435-714 115-408 (461)
15 KOG1048 Neural adherens juncti 99.6 3.5E-14 7.6E-19 162.8 17.4 280 427-712 234-598 (717)
16 KOG4199 Uncharacterized conser 99.5 7.1E-12 1.5E-16 130.7 23.8 264 440-708 160-443 (461)
17 KOG1048 Neural adherens juncti 99.5 3.2E-12 7E-17 146.8 22.3 283 425-713 274-688 (717)
18 PF04826 Arm_2: Armadillo-like 99.4 7.6E-12 1.7E-16 131.1 20.5 191 426-627 12-207 (254)
19 PF04826 Arm_2: Armadillo-like 99.4 1.3E-11 2.9E-16 129.3 18.2 195 465-668 8-206 (254)
20 KOG1222 Kinesin associated pro 99.3 5.5E-11 1.2E-15 128.6 16.8 256 429-692 307-602 (791)
21 KOG2122 Beta-catenin-binding p 99.2 1.5E-10 3.3E-15 137.6 16.9 273 440-714 251-564 (2195)
22 cd00020 ARM Armadillo/beta-cat 99.2 3.1E-10 6.7E-15 104.3 12.0 117 550-667 3-120 (120)
23 PF10508 Proteasom_PSMB: Prote 99.1 7.2E-09 1.6E-13 119.9 24.8 271 430-709 81-366 (503)
24 cd00020 ARM Armadillo/beta-cat 99.1 1.3E-09 2.8E-14 100.1 14.5 117 591-708 2-119 (120)
25 KOG4500 Rho/Rac GTPase guanine 99.0 7.3E-09 1.6E-13 111.4 18.2 279 428-708 89-389 (604)
26 PF15227 zf-C3HC4_4: zinc fing 99.0 1.8E-10 4E-15 86.4 3.2 39 285-323 1-42 (42)
27 PLN03208 E3 ubiquitin-protein 99.0 3.4E-10 7.4E-15 111.5 4.4 61 277-337 13-88 (193)
28 KOG1222 Kinesin associated pro 99.0 5E-09 1.1E-13 113.7 13.3 197 488-690 278-477 (791)
29 PF10508 Proteasom_PSMB: Prote 98.9 2.6E-07 5.6E-12 107.1 25.4 280 426-711 119-422 (503)
30 TIGR00599 rad18 DNA repair pro 98.9 1.5E-09 3.2E-14 119.3 6.5 71 278-349 22-92 (397)
31 KOG4642 Chaperone-dependent E3 98.9 1.4E-09 2.9E-14 109.5 4.0 76 276-351 205-280 (284)
32 KOG4500 Rho/Rac GTPase guanine 98.8 1.3E-07 2.8E-12 102.0 15.9 280 429-711 226-521 (604)
33 PRK09687 putative lyase; Provi 98.8 5.1E-07 1.1E-11 96.7 20.3 218 430-705 58-278 (280)
34 PF11789 zf-Nse: Zinc-finger o 98.7 3.5E-09 7.5E-14 84.8 2.0 44 281-324 10-55 (57)
35 PF03224 V-ATPase_H_N: V-ATPas 98.7 3.2E-07 6.9E-12 100.0 15.8 232 469-703 55-308 (312)
36 PRK09687 putative lyase; Provi 98.7 1.7E-06 3.7E-11 92.7 20.7 222 427-707 24-248 (280)
37 PF13923 zf-C3HC4_2: Zinc fing 98.6 1.7E-08 3.7E-13 74.6 2.8 38 285-323 1-39 (39)
38 KOG0168 Putative ubiquitin fus 98.6 1.3E-06 2.9E-11 100.9 18.2 257 426-691 167-437 (1051)
39 cd00256 VATPase_H VATPase_H, r 98.6 4.7E-06 1E-10 93.3 21.5 277 428-708 55-424 (429)
40 PF03224 V-ATPase_H_N: V-ATPas 98.6 9.1E-07 2E-11 96.5 14.6 223 426-657 58-304 (312)
41 PRK13800 putative oxidoreducta 98.5 1.7E-05 3.8E-10 98.3 24.8 225 427-707 622-865 (897)
42 PF13445 zf-RING_UBOX: RING-ty 98.5 6E-08 1.3E-12 72.9 1.9 36 285-321 1-43 (43)
43 KOG0946 ER-Golgi vesicle-tethe 98.4 3E-05 6.5E-10 89.5 23.2 270 426-702 22-339 (970)
44 KOG0287 Postreplication repair 98.4 1.1E-07 2.4E-12 99.0 2.7 68 280-348 21-88 (442)
45 PF14835 zf-RING_6: zf-RING of 98.4 9.8E-08 2.1E-12 76.6 1.7 58 282-342 7-65 (65)
46 PF00097 zf-C3HC4: Zinc finger 98.4 2.5E-07 5.5E-12 69.1 3.1 39 285-323 1-41 (41)
47 PRK13800 putative oxidoreducta 98.3 7.5E-05 1.6E-09 92.7 24.6 227 426-706 652-896 (897)
48 PF13920 zf-C3HC4_3: Zinc fing 98.3 4.4E-07 9.6E-12 70.9 2.8 47 281-328 1-48 (50)
49 KOG2160 Armadillo/beta-catenin 98.3 4E-05 8.7E-10 82.4 18.2 184 440-667 96-282 (342)
50 PHA02929 N1R/p28-like protein; 98.3 5.8E-07 1.3E-11 92.6 4.2 48 280-328 172-227 (238)
51 KOG0823 Predicted E3 ubiquitin 98.3 3.9E-07 8.4E-12 91.6 2.6 58 280-337 45-104 (230)
52 KOG2177 Predicted E3 ubiquitin 98.3 5.8E-07 1.3E-11 96.5 4.0 71 278-351 9-79 (386)
53 KOG0320 Predicted E3 ubiquitin 98.2 8.4E-07 1.8E-11 85.4 4.0 53 281-334 130-184 (187)
54 KOG2042 Ubiquitin fusion degra 98.2 1.2E-06 2.6E-11 104.3 5.9 73 276-349 864-937 (943)
55 KOG0168 Putative ubiquitin fus 98.2 1.7E-05 3.7E-10 92.1 14.0 157 549-710 206-365 (1051)
56 KOG4646 Uncharacterized conser 98.1 1.2E-05 2.7E-10 74.5 9.5 156 550-706 12-167 (173)
57 cd00162 RING RING-finger (Real 98.1 2.3E-06 4.9E-11 64.4 3.6 44 284-327 1-45 (45)
58 KOG2160 Armadillo/beta-catenin 98.1 6.5E-05 1.4E-09 80.8 15.6 147 566-713 94-244 (342)
59 COG5432 RAD18 RING-finger-cont 98.1 1.9E-06 4.1E-11 88.2 3.3 67 281-348 24-90 (391)
60 PF13639 zf-RING_2: Ring finge 98.1 1.4E-06 2.9E-11 66.2 1.5 40 284-324 2-44 (44)
61 PF01602 Adaptin_N: Adaptin N 98.0 0.00017 3.7E-09 84.0 18.3 250 430-711 118-371 (526)
62 KOG0317 Predicted E3 ubiquitin 98.0 5E-06 1.1E-10 86.1 4.3 54 279-333 236-289 (293)
63 smart00184 RING Ring finger. E 98.0 5.7E-06 1.2E-10 60.0 3.2 39 285-323 1-39 (39)
64 PF01602 Adaptin_N: Adaptin N 97.9 0.00021 4.6E-09 83.3 17.1 251 428-710 81-334 (526)
65 KOG2171 Karyopherin (importin) 97.9 0.00089 1.9E-08 81.0 20.7 152 556-712 350-507 (1075)
66 cd00256 VATPase_H VATPase_H, r 97.9 0.0036 7.8E-08 70.5 24.2 238 469-710 53-309 (429)
67 PHA02926 zinc finger-like prot 97.8 1E-05 2.2E-10 80.8 3.4 56 278-335 166-235 (242)
68 KOG1293 Proteins containing ar 97.8 0.00021 4.5E-09 81.6 13.2 147 530-678 392-544 (678)
69 KOG1293 Proteins containing ar 97.8 0.00066 1.4E-08 77.7 17.2 142 568-710 390-534 (678)
70 KOG2973 Uncharacterized conser 97.8 0.0045 9.8E-08 65.4 21.4 275 427-713 4-319 (353)
71 KOG4646 Uncharacterized conser 97.8 0.00012 2.6E-09 68.1 8.5 120 515-635 16-139 (173)
72 PF05536 Neurochondrin: Neuroc 97.8 0.00026 5.7E-09 82.6 13.5 152 516-669 6-170 (543)
73 KOG0311 Predicted E3 ubiquitin 97.7 6.1E-06 1.3E-10 87.3 -0.4 67 279-345 40-108 (381)
74 KOG0946 ER-Golgi vesicle-tethe 97.7 0.00041 8.9E-09 80.5 14.0 195 515-712 22-244 (970)
75 COG5113 UFD2 Ubiquitin fusion 97.7 4E-05 8.7E-10 86.2 5.6 75 274-349 846-921 (929)
76 KOG2759 Vacuolar H+-ATPase V1 97.7 0.0052 1.1E-07 67.4 21.2 276 427-708 66-437 (442)
77 TIGR00570 cdk7 CDK-activating 97.7 6.1E-05 1.3E-09 80.1 6.1 53 281-333 2-59 (309)
78 PF00514 Arm: Armadillo/beta-c 97.7 6.5E-05 1.4E-09 56.0 4.5 40 458-501 1-40 (41)
79 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0077 1.7E-07 67.1 22.9 270 430-708 29-363 (371)
80 KOG3678 SARM protein (with ste 97.6 0.00083 1.8E-08 73.7 14.3 242 462-713 173-456 (832)
81 PF14664 RICTOR_N: Rapamycin-i 97.6 0.0069 1.5E-07 67.5 21.3 256 448-714 4-274 (371)
82 PF00514 Arm: Armadillo/beta-c 97.6 5.7E-05 1.2E-09 56.3 3.3 40 586-625 2-41 (41)
83 PF14634 zf-RING_5: zinc-RING 97.6 5.9E-05 1.3E-09 57.3 3.1 41 284-325 1-44 (44)
84 PF05536 Neurochondrin: Neuroc 97.5 0.003 6.4E-08 73.9 17.7 238 471-714 7-266 (543)
85 TIGR02270 conserved hypothetic 97.5 0.0095 2.1E-07 67.2 20.5 131 556-713 149-300 (410)
86 COG5574 PEX10 RING-finger-cont 97.5 7.9E-05 1.7E-09 76.4 3.3 54 277-330 209-264 (271)
87 KOG0289 mRNA splicing factor [ 97.4 6.9E-05 1.5E-09 81.3 2.2 52 283-335 1-53 (506)
88 KOG0297 TNF receptor-associate 97.4 0.00016 3.5E-09 81.0 4.7 68 279-347 18-87 (391)
89 PTZ00429 beta-adaptin; Provisi 97.4 0.033 7.1E-07 67.4 24.4 258 426-711 68-328 (746)
90 KOG4159 Predicted E3 ubiquitin 97.3 0.00015 3.3E-09 80.3 4.0 73 275-348 77-154 (398)
91 PTZ00429 beta-adaptin; Provisi 97.3 0.045 9.7E-07 66.2 24.2 249 428-708 34-284 (746)
92 KOG2164 Predicted E3 ubiquitin 97.3 0.00017 3.7E-09 80.3 3.3 71 281-351 185-263 (513)
93 PF12678 zf-rbx1: RING-H2 zinc 97.3 0.00026 5.6E-09 60.0 3.6 39 285-324 22-73 (73)
94 KOG2660 Locus-specific chromos 97.1 0.0002 4.4E-09 75.7 2.3 65 279-344 12-81 (331)
95 COG5222 Uncharacterized conser 97.1 0.00056 1.2E-08 70.7 5.3 66 283-348 275-342 (427)
96 PF12348 CLASP_N: CLASP N term 97.1 0.004 8.7E-08 64.4 11.3 180 436-627 17-208 (228)
97 KOG2973 Uncharacterized conser 97.1 0.0073 1.6E-07 63.8 12.8 191 472-670 6-207 (353)
98 KOG3678 SARM protein (with ste 97.1 0.013 2.7E-07 64.8 14.8 231 427-665 181-450 (832)
99 KOG0978 E3 ubiquitin ligase in 97.0 0.00022 4.8E-09 83.1 1.6 54 281-334 642-695 (698)
100 KOG2171 Karyopherin (importin) 97.0 0.051 1.1E-06 66.4 20.9 266 426-710 4-279 (1075)
101 PF10165 Ric8: Guanine nucleot 97.0 0.064 1.4E-06 61.5 20.9 240 439-680 44-348 (446)
102 KOG2734 Uncharacterized conser 97.0 0.083 1.8E-06 58.4 20.1 240 426-668 125-401 (536)
103 KOG1789 Endocytosis protein RM 96.9 0.035 7.7E-07 66.4 17.4 117 443-563 1741-1862(2235)
104 PF10165 Ric8: Guanine nucleot 96.9 0.037 8E-07 63.4 17.4 265 447-712 1-340 (446)
105 COG5369 Uncharacterized conser 96.8 0.0072 1.6E-07 67.8 10.5 183 447-634 409-603 (743)
106 smart00185 ARM Armadillo/beta- 96.7 0.0026 5.6E-08 46.7 4.7 39 459-501 2-40 (41)
107 smart00185 ARM Armadillo/beta- 96.7 0.0029 6.3E-08 46.5 4.6 40 586-625 2-41 (41)
108 KOG2734 Uncharacterized conser 96.6 0.17 3.8E-06 56.0 19.5 234 447-687 104-368 (536)
109 COG5369 Uncharacterized conser 96.6 0.015 3.3E-07 65.4 11.4 185 494-679 410-606 (743)
110 PF13646 HEAT_2: HEAT repeats; 96.6 0.0031 6.8E-08 54.6 5.1 85 556-662 1-87 (88)
111 PF11841 DUF3361: Domain of un 96.6 0.027 5.8E-07 54.8 11.8 120 550-669 7-133 (160)
112 PF12348 CLASP_N: CLASP N term 96.5 0.013 2.8E-07 60.7 9.6 180 485-669 19-208 (228)
113 COG1413 FOG: HEAT repeat [Ener 96.4 0.28 6.1E-06 53.8 20.3 185 427-668 44-243 (335)
114 PF11841 DUF3361: Domain of un 96.4 0.057 1.2E-06 52.5 12.6 119 590-710 5-132 (160)
115 PF13646 HEAT_2: HEAT repeats; 96.3 0.013 2.8E-07 50.8 7.1 85 471-580 1-88 (88)
116 TIGR02270 conserved hypothetic 96.3 0.11 2.3E-06 58.9 16.2 147 517-707 88-236 (410)
117 KOG1242 Protein containing ada 96.3 0.18 4E-06 58.1 17.8 264 430-710 138-446 (569)
118 KOG0824 Predicted E3 ubiquitin 96.2 0.0026 5.6E-08 66.5 2.6 52 283-334 8-60 (324)
119 PF12861 zf-Apc11: Anaphase-pr 96.2 0.0045 9.8E-08 53.4 3.5 49 280-328 30-82 (85)
120 KOG2759 Vacuolar H+-ATPase V1 96.2 0.88 1.9E-05 50.5 21.8 231 469-704 65-316 (442)
121 PF04641 Rtf2: Rtf2 RING-finge 96.2 0.0036 7.8E-08 66.5 3.3 54 279-334 110-167 (260)
122 KOG4628 Predicted E3 ubiquitin 96.2 0.0032 6.9E-08 68.3 2.9 46 283-328 230-278 (348)
123 COG1413 FOG: HEAT repeat [Ener 96.1 0.2 4.4E-06 54.9 17.1 180 469-704 43-237 (335)
124 KOG0212 Uncharacterized conser 96.1 0.14 2.9E-06 58.4 14.9 230 426-667 208-444 (675)
125 KOG1059 Vesicle coat complex A 96.1 0.31 6.8E-06 57.0 18.1 217 426-668 144-366 (877)
126 KOG1002 Nucleotide excision re 96.0 0.0028 6.2E-08 70.3 1.9 51 280-330 534-588 (791)
127 KOG1813 Predicted E3 ubiquitin 96.0 0.0042 9.1E-08 64.9 2.6 58 283-342 242-299 (313)
128 KOG0802 E3 ubiquitin ligase [P 95.9 0.0032 7E-08 73.9 1.6 47 280-327 289-340 (543)
129 KOG1789 Endocytosis protein RM 95.8 3.7 7.9E-05 50.3 25.3 138 570-710 1740-1884(2235)
130 KOG2979 Protein involved in DN 95.7 0.0093 2E-07 61.4 3.7 62 281-342 175-242 (262)
131 KOG1824 TATA-binding protein-i 95.7 0.3 6.5E-06 58.6 16.3 270 430-714 9-291 (1233)
132 KOG1242 Protein containing ada 95.7 0.6 1.3E-05 54.0 18.3 220 425-667 95-324 (569)
133 KOG3039 Uncharacterized conser 95.6 0.0086 1.9E-07 60.8 2.9 36 279-314 40-75 (303)
134 KOG1059 Vesicle coat complex A 95.6 0.4 8.6E-06 56.2 16.4 259 426-714 181-448 (877)
135 KOG1517 Guanine nucleotide bin 95.6 0.33 7E-06 58.9 16.1 235 426-669 472-734 (1387)
136 PF09759 Atx10homo_assoc: Spin 95.6 0.048 1E-06 49.1 7.3 68 444-513 3-70 (102)
137 KOG4413 26S proteasome regulat 95.5 0.7 1.5E-05 49.6 16.9 243 440-687 184-459 (524)
138 KOG2023 Nuclear transport rece 95.4 0.46 1E-05 55.2 16.1 275 425-714 127-468 (885)
139 KOG2879 Predicted E3 ubiquitin 95.4 0.017 3.8E-07 59.8 4.4 50 279-328 236-287 (298)
140 KOG4413 26S proteasome regulat 95.3 0.77 1.7E-05 49.3 16.3 249 431-686 87-353 (524)
141 KOG1062 Vesicle coat complex A 95.3 2.1 4.5E-05 51.1 21.1 227 430-666 183-469 (866)
142 KOG0826 Predicted E3 ubiquitin 95.3 0.0079 1.7E-07 63.7 1.5 54 275-329 293-347 (357)
143 COG5540 RING-finger-containing 95.1 0.016 3.4E-07 60.7 3.0 47 283-329 324-373 (374)
144 PF13513 HEAT_EZ: HEAT-like re 95.0 0.029 6.2E-07 44.4 3.7 55 569-623 1-55 (55)
145 KOG3039 Uncharacterized conser 94.9 0.02 4.2E-07 58.3 3.0 54 281-335 220-277 (303)
146 KOG4367 Predicted Zn-finger pr 94.9 0.0094 2E-07 64.7 0.8 34 280-313 2-35 (699)
147 KOG3036 Protein involved in ce 94.8 0.75 1.6E-05 47.6 14.0 177 531-708 97-290 (293)
148 KOG0212 Uncharacterized conser 94.7 1.3 2.9E-05 50.7 17.1 275 426-712 124-409 (675)
149 PF04063 DUF383: Domain of unk 94.7 0.14 3E-06 51.8 8.7 123 568-690 8-157 (192)
150 KOG1517 Guanine nucleotide bin 94.7 0.72 1.6E-05 56.1 15.6 200 508-707 505-730 (1387)
151 COG5240 SEC21 Vesicle coat com 94.7 2.1 4.6E-05 49.1 18.3 265 425-711 262-557 (898)
152 KOG0804 Cytoplasmic Zn-finger 94.5 0.022 4.7E-07 62.8 2.3 45 281-328 174-222 (493)
153 COG5243 HRD1 HRD ubiquitin lig 94.3 0.03 6.6E-07 60.0 3.0 47 280-327 285-344 (491)
154 KOG4151 Myosin assembly protei 94.3 0.59 1.3E-05 55.5 13.7 245 450-705 485-737 (748)
155 PF13764 E3_UbLigase_R4: E3 ub 94.3 2.4 5.1E-05 51.8 19.1 242 464-709 112-406 (802)
156 COG5231 VMA13 Vacuolar H+-ATPa 94.1 0.43 9.3E-06 51.0 10.8 224 485-709 161-428 (432)
157 PF09759 Atx10homo_assoc: Spin 94.0 0.26 5.6E-06 44.5 7.8 67 612-679 2-71 (102)
158 PF05659 RPW8: Arabidopsis bro 94.0 0.37 8E-06 46.6 9.4 105 12-124 25-134 (147)
159 KOG1061 Vesicle coat complex A 93.8 0.51 1.1E-05 55.8 11.8 71 426-504 121-191 (734)
160 KOG2023 Nuclear transport rece 93.8 0.33 7.1E-06 56.3 10.0 170 468-647 127-308 (885)
161 PF06371 Drf_GBD: Diaphanous G 93.7 0.2 4.3E-06 50.0 7.5 79 589-667 100-187 (187)
162 KOG0213 Splicing factor 3b, su 93.6 0.46 9.9E-06 55.7 10.7 150 554-706 799-951 (1172)
163 KOG1078 Vesicle coat complex C 93.4 4 8.8E-05 48.6 18.0 256 428-709 246-532 (865)
164 COG5152 Uncharacterized conser 93.3 0.035 7.6E-07 54.6 1.1 44 283-327 197-240 (259)
165 KOG1241 Karyopherin (importin) 93.2 2.2 4.7E-05 50.6 15.4 217 439-667 229-477 (859)
166 KOG3113 Uncharacterized conser 93.2 0.063 1.4E-06 55.0 2.8 51 280-333 109-163 (293)
167 KOG2817 Predicted E3 ubiquitin 93.1 0.061 1.3E-06 58.8 2.8 43 282-324 334-381 (394)
168 KOG2999 Regulator of Rac1, req 93.0 0.96 2.1E-05 51.6 11.9 151 555-708 84-241 (713)
169 PF13513 HEAT_EZ: HEAT-like re 93.0 0.14 3.1E-06 40.3 4.0 54 611-665 2-55 (55)
170 KOG3036 Protein involved in ce 92.9 2.2 4.7E-05 44.4 13.2 140 572-711 96-249 (293)
171 PF02891 zf-MIZ: MIZ/SP-RING z 92.9 0.094 2E-06 41.0 2.8 45 282-326 2-50 (50)
172 KOG1645 RING-finger-containing 92.9 0.055 1.2E-06 59.0 1.9 60 283-342 5-70 (463)
173 KOG2259 Uncharacterized conser 92.6 0.96 2.1E-05 52.6 11.3 221 426-669 234-476 (823)
174 PF07814 WAPL: Wings apart-lik 92.5 2.6 5.6E-05 47.1 14.8 245 425-681 20-313 (361)
175 COG5627 MMS21 DNA repair prote 92.0 0.15 3.2E-06 51.8 3.6 57 282-338 189-249 (275)
176 KOG1241 Karyopherin (importin) 92.0 4.7 0.0001 48.0 16.0 236 424-667 361-626 (859)
177 COG5096 Vesicle coat complex, 91.7 3.4 7.4E-05 49.8 15.0 67 555-624 128-194 (757)
178 KOG1248 Uncharacterized conser 91.7 3.8 8.2E-05 50.9 15.5 211 485-707 666-896 (1176)
179 KOG1077 Vesicle coat complex A 91.5 13 0.00029 44.0 18.7 242 433-699 153-423 (938)
180 PF08569 Mo25: Mo25-like; Int 91.2 7.2 0.00016 43.0 16.0 198 464-666 71-282 (335)
181 KOG0883 Cyclophilin type, U bo 91.1 0.14 3.1E-06 55.4 2.6 53 282-335 40-92 (518)
182 PF12755 Vac14_Fab1_bd: Vacuol 91.0 0.93 2E-05 40.6 7.3 68 638-708 27-96 (97)
183 COG5181 HSH155 U2 snRNP splice 90.8 3.6 7.9E-05 47.7 13.2 148 428-584 606-759 (975)
184 KOG1061 Vesicle coat complex A 90.7 2.4 5.2E-05 50.4 12.2 241 426-693 49-293 (734)
185 PF04078 Rcd1: Cell differenti 90.5 5 0.00011 42.3 13.2 194 440-635 8-228 (262)
186 COG5181 HSH155 U2 snRNP splice 90.5 0.48 1E-05 54.5 6.1 151 555-708 605-758 (975)
187 COG5231 VMA13 Vacuolar H+-ATPa 90.1 9.1 0.0002 41.3 14.7 221 440-666 162-427 (432)
188 PF04063 DUF383: Domain of unk 90.0 1.6 3.5E-05 44.1 8.9 105 605-710 4-133 (192)
189 KOG2259 Uncharacterized conser 89.3 3.8 8.3E-05 47.9 12.1 213 432-668 203-440 (823)
190 smart00744 RINGv The RING-vari 89.2 0.4 8.7E-06 37.3 3.1 40 285-324 2-49 (49)
191 PF12460 MMS19_C: RNAPII trans 89.1 15 0.00032 41.8 17.0 192 426-627 189-396 (415)
192 KOG1062 Vesicle coat complex A 89.0 41 0.00088 40.7 20.3 248 434-712 150-418 (866)
193 KOG1077 Vesicle coat complex A 88.7 47 0.001 39.6 20.2 71 639-712 330-401 (938)
194 PF12031 DUF3518: Domain of un 88.7 1.1 2.3E-05 46.5 6.6 89 611-699 139-235 (257)
195 PF12755 Vac14_Fab1_bd: Vacuol 88.7 1.6 3.5E-05 39.1 7.0 91 572-665 3-94 (97)
196 KOG1039 Predicted E3 ubiquitin 88.7 0.27 5.8E-06 53.9 2.4 49 280-328 159-221 (344)
197 KOG0213 Splicing factor 3b, su 88.4 7 0.00015 46.4 13.4 254 430-708 803-1064(1172)
198 KOG1734 Predicted RING-contain 87.9 0.14 3E-06 53.0 -0.4 53 281-333 223-286 (328)
199 PF14570 zf-RING_4: RING/Ubox 87.6 0.55 1.2E-05 36.2 2.8 43 285-327 1-47 (48)
200 PF14668 RICTOR_V: Rapamycin-i 87.5 1.4 3.1E-05 37.3 5.6 64 572-635 4-68 (73)
201 PF04078 Rcd1: Cell differenti 87.5 2.8 6E-05 44.1 8.9 175 531-708 68-261 (262)
202 KOG2611 Neurochondrin/leucine- 87.4 23 0.0005 40.3 16.1 137 488-625 26-182 (698)
203 PF05004 IFRD: Interferon-rela 87.1 26 0.00055 38.3 16.6 190 426-624 43-256 (309)
204 PF12031 DUF3518: Domain of un 86.8 1.3 2.9E-05 45.8 5.9 81 570-650 139-228 (257)
205 COG5109 Uncharacterized conser 86.6 0.41 8.9E-06 50.6 2.2 45 280-324 334-383 (396)
206 PF11698 V-ATPase_H_C: V-ATPas 86.4 2.2 4.7E-05 39.7 6.6 73 426-502 43-115 (119)
207 COG5096 Vesicle coat complex, 85.8 13 0.00029 45.0 14.3 140 556-710 57-196 (757)
208 KOG0567 HEAT repeat-containing 85.7 52 0.0011 34.9 18.1 201 465-709 63-280 (289)
209 PF11793 FANCL_C: FANCL C-term 85.6 0.21 4.6E-06 41.9 -0.4 47 282-328 2-66 (70)
210 KOG4151 Myosin assembly protei 85.4 7 0.00015 46.8 11.7 135 491-626 560-700 (748)
211 PF08045 CDC14: Cell division 85.2 4 8.8E-05 43.1 8.7 83 444-529 108-190 (257)
212 KOG0828 Predicted E3 ubiquitin 85.0 0.47 1E-05 53.1 1.8 50 280-329 569-635 (636)
213 KOG1824 TATA-binding protein-i 84.8 7.6 0.00016 47.3 11.5 174 485-665 582-759 (1233)
214 KOG3800 Predicted E3 ubiquitin 84.7 0.62 1.3E-05 49.1 2.4 30 299-328 22-51 (300)
215 KOG2999 Regulator of Rac1, req 84.3 8.2 0.00018 44.4 11.0 150 519-668 87-243 (713)
216 PF08045 CDC14: Cell division 84.2 16 0.00035 38.6 12.7 97 613-710 108-208 (257)
217 KOG0825 PHD Zn-finger protein 84.1 0.28 6E-06 57.5 -0.5 48 281-329 122-172 (1134)
218 KOG1001 Helicase-like transcri 83.8 0.26 5.7E-06 58.9 -0.9 47 283-330 455-502 (674)
219 PF12717 Cnd1: non-SMC mitotic 83.4 5.8 0.00012 39.5 8.7 94 610-713 2-96 (178)
220 KOG1785 Tyrosine kinase negati 83.3 0.54 1.2E-05 51.2 1.3 46 284-329 371-417 (563)
221 PF11698 V-ATPase_H_C: V-ATPas 83.2 2.2 4.7E-05 39.7 5.0 71 638-708 43-114 (119)
222 PF02985 HEAT: HEAT repeat; I 83.1 1.7 3.6E-05 30.1 3.3 28 556-584 2-29 (31)
223 PF14447 Prok-RING_4: Prokaryo 82.3 0.88 1.9E-05 36.0 1.8 45 283-330 8-52 (55)
224 KOG3161 Predicted E3 ubiquitin 82.2 0.73 1.6E-05 53.1 1.9 60 281-343 10-77 (861)
225 PF12717 Cnd1: non-SMC mitotic 82.0 7 0.00015 38.9 8.7 92 568-668 1-93 (178)
226 KOG1240 Protein kinase contain 82.0 15 0.00033 46.0 12.8 252 440-711 436-727 (1431)
227 KOG0396 Uncharacterized conser 81.9 0.68 1.5E-05 50.4 1.4 50 282-331 330-382 (389)
228 KOG0211 Protein phosphatase 2A 81.4 31 0.00067 42.2 15.1 223 425-662 235-461 (759)
229 COG5194 APC11 Component of SCF 80.6 1.1 2.4E-05 38.0 1.9 28 299-327 53-80 (88)
230 COG5098 Chromosome condensatio 80.5 4.1 9E-05 47.8 7.0 108 598-707 301-413 (1128)
231 PF12460 MMS19_C: RNAPII trans 80.0 33 0.00071 39.0 14.3 131 554-688 271-414 (415)
232 PF02985 HEAT: HEAT repeat; I 79.7 3.3 7.2E-05 28.6 3.9 28 640-667 2-29 (31)
233 KOG0827 Predicted E3 ubiquitin 79.5 1.2 2.5E-05 48.7 2.2 51 281-331 3-59 (465)
234 KOG1493 Anaphase-promoting com 79.2 0.46 1E-05 39.9 -0.7 30 298-327 49-80 (84)
235 COG5219 Uncharacterized conser 78.9 0.93 2E-05 54.4 1.3 45 283-327 1470-1522(1525)
236 PF05004 IFRD: Interferon-rela 78.8 42 0.00092 36.6 14.1 153 554-712 86-260 (309)
237 PF12719 Cnd3: Nuclear condens 78.7 59 0.0013 35.1 15.2 173 485-668 39-234 (298)
238 PF13764 E3_UbLigase_R4: E3 ub 78.5 16 0.00034 45.0 11.5 129 551-679 114-270 (802)
239 KOG1240 Protein kinase contain 78.5 32 0.00068 43.4 13.8 108 555-667 618-725 (1431)
240 KOG4535 HEAT and armadillo rep 77.9 2.3 5E-05 47.9 3.9 195 474-668 392-604 (728)
241 KOG4172 Predicted E3 ubiquitin 77.7 0.68 1.5E-05 36.3 -0.1 45 283-327 8-53 (62)
242 PF05605 zf-Di19: Drought indu 77.4 2.5 5.3E-05 33.4 3.0 38 281-325 1-39 (54)
243 KOG2274 Predicted importin 9 [ 76.8 52 0.0011 40.4 14.7 216 485-710 462-690 (1005)
244 KOG0915 Uncharacterized conser 76.6 96 0.0021 40.4 17.4 278 423-714 953-1270(1702)
245 KOG2611 Neurochondrin/leucine- 76.4 42 0.00092 38.3 13.0 127 559-690 16-162 (698)
246 KOG1058 Vesicle coat complex C 75.9 25 0.00055 42.1 11.6 182 428-628 136-349 (948)
247 COG5209 RCD1 Uncharacterized p 75.9 25 0.00053 36.3 10.2 177 531-708 118-311 (315)
248 KOG0414 Chromosome condensatio 75.0 26 0.00057 44.0 11.9 142 470-625 920-1064(1251)
249 COG5175 MOT2 Transcriptional r 74.8 1.9 4.1E-05 46.1 2.2 47 284-330 16-66 (480)
250 PF14500 MMS19_N: Dos2-interac 74.7 1E+02 0.0022 32.8 15.3 207 435-667 8-237 (262)
251 COG5215 KAP95 Karyopherin (imp 74.5 79 0.0017 37.0 14.7 220 437-668 231-480 (858)
252 KOG1571 Predicted E3 ubiquitin 74.4 1.9 4.1E-05 47.0 2.1 46 278-327 301-346 (355)
253 KOG0301 Phospholipase A2-activ 74.4 44 0.00096 39.6 13.0 163 431-606 549-726 (745)
254 COG5209 RCD1 Uncharacterized p 74.1 35 0.00075 35.3 10.7 201 428-633 49-276 (315)
255 PF08569 Mo25: Mo25-like; Int 74.1 87 0.0019 34.6 14.9 159 550-712 72-241 (335)
256 KOG4692 Predicted E3 ubiquitin 74.1 1.9 4.1E-05 46.4 2.0 46 281-327 421-466 (489)
257 KOG1060 Vesicle coat complex A 73.7 1.1E+02 0.0025 37.1 16.2 209 428-667 37-246 (968)
258 KOG1788 Uncharacterized conser 73.3 59 0.0013 40.5 13.8 254 448-712 663-985 (2799)
259 KOG4653 Uncharacterized conser 72.9 80 0.0017 38.7 14.9 230 426-708 727-963 (982)
260 PF11701 UNC45-central: Myosin 72.9 16 0.00034 35.7 8.0 100 425-528 41-141 (157)
261 KOG1788 Uncharacterized conser 72.1 70 0.0015 39.9 14.0 99 569-667 870-982 (2799)
262 cd03569 VHS_Hrs_Vps27p VHS dom 71.8 20 0.00042 34.5 8.2 74 425-502 40-114 (142)
263 KOG4464 Signaling protein RIC- 71.0 97 0.0021 34.9 14.0 161 425-586 44-233 (532)
264 KOG1248 Uncharacterized conser 70.8 3E+02 0.0066 35.1 20.2 175 531-710 672-857 (1176)
265 PF04641 Rtf2: Rtf2 RING-finge 70.8 4.2 9.2E-05 43.2 3.7 36 281-316 33-69 (260)
266 PF06025 DUF913: Domain of Unk 70.8 74 0.0016 35.8 13.7 163 446-608 3-208 (379)
267 KOG1967 DNA repair/transcripti 70.3 22 0.00048 43.5 9.6 146 553-702 866-1017(1030)
268 COG5215 KAP95 Karyopherin (imp 70.2 2E+02 0.0044 33.9 16.6 176 521-704 100-287 (858)
269 KOG1820 Microtubule-associated 69.5 1.1E+02 0.0023 38.0 15.5 181 429-624 256-442 (815)
270 KOG0414 Chromosome condensatio 68.7 24 0.00051 44.3 9.6 140 554-707 919-1062(1251)
271 cd03561 VHS VHS domain family; 68.6 30 0.00065 32.7 8.7 76 425-502 36-112 (133)
272 PF05918 API5: Apoptosis inhib 68.5 17 0.00037 42.6 8.2 97 553-663 58-158 (556)
273 KOG4362 Transcriptional regula 67.7 2.3 5E-05 50.3 1.0 65 281-345 20-86 (684)
274 PF06371 Drf_GBD: Diaphanous G 67.5 15 0.00032 36.5 6.7 76 632-708 102-186 (187)
275 KOG4535 HEAT and armadillo rep 67.2 6.4 0.00014 44.6 4.2 152 469-625 433-603 (728)
276 KOG1943 Beta-tubulin folding c 65.9 2.7E+02 0.0058 35.3 17.5 226 469-711 341-617 (1133)
277 COG5240 SEC21 Vesicle coat com 65.6 2.7E+02 0.0059 32.9 16.4 104 428-543 225-333 (898)
278 KOG4185 Predicted E3 ubiquitin 65.2 5.5 0.00012 43.0 3.3 51 295-345 22-77 (296)
279 PF12530 DUF3730: Protein of u 64.9 1E+02 0.0022 32.1 12.6 139 556-710 2-152 (234)
280 smart00288 VHS Domain present 63.8 35 0.00077 32.3 8.1 75 425-502 36-111 (133)
281 PF14668 RICTOR_V: Rapamycin-i 63.7 29 0.00064 29.4 6.6 66 613-680 4-70 (73)
282 PF05918 API5: Apoptosis inhib 63.7 17 0.00037 42.6 7.0 128 557-705 26-158 (556)
283 PF08324 PUL: PUL domain; Int 62.9 21 0.00045 37.8 7.1 171 428-601 65-249 (268)
284 KOG1943 Beta-tubulin folding c 62.9 72 0.0016 40.0 12.1 149 553-708 340-499 (1133)
285 KOG0211 Protein phosphatase 2A 62.9 1.2E+02 0.0026 37.2 14.1 261 430-708 359-624 (759)
286 PF06025 DUF913: Domain of Unk 62.7 1.3E+02 0.0028 34.0 13.5 120 571-691 76-207 (379)
287 KOG2137 Protein kinase [Signal 62.7 50 0.0011 39.6 10.5 179 514-700 348-528 (700)
288 KOG2930 SCF ubiquitin ligase, 61.2 5.5 0.00012 35.6 1.9 27 299-326 80-106 (114)
289 PF12726 SEN1_N: SEN1 N termin 60.8 4E+02 0.0086 32.8 19.1 126 554-681 441-569 (727)
290 KOG4464 Signaling protein RIC- 60.7 1.4E+02 0.0031 33.6 12.8 105 440-544 110-233 (532)
291 cd03561 VHS VHS domain family; 59.6 45 0.00098 31.5 8.1 76 638-713 37-116 (133)
292 cd03568 VHS_STAM VHS domain fa 58.0 51 0.0011 31.8 8.1 75 638-712 37-113 (144)
293 KOG0298 DEAD box-containing he 57.5 3.4 7.3E-05 51.8 -0.1 44 280-324 1151-1195(1394)
294 KOG0915 Uncharacterized conser 57.4 1.8E+02 0.0039 38.1 14.4 265 426-712 817-1113(1702)
295 PF11701 UNC45-central: Myosin 57.4 39 0.00085 32.9 7.4 143 556-704 5-154 (157)
296 cd03568 VHS_STAM VHS domain fa 57.2 54 0.0012 31.6 8.2 74 425-502 36-110 (144)
297 KOG1820 Microtubule-associated 56.7 1.3E+02 0.0028 37.3 13.1 145 553-704 293-438 (815)
298 KOG3665 ZYG-1-like serine/thre 56.6 1.9E+02 0.0042 35.3 14.5 168 450-620 494-692 (699)
299 PF06416 DUF1076: Protein of u 56.1 8 0.00017 35.2 2.0 52 280-332 38-95 (113)
300 cd03569 VHS_Hrs_Vps27p VHS dom 55.8 51 0.0011 31.6 7.8 74 638-711 41-116 (142)
301 PF14225 MOR2-PAG1_C: Cell mor 55.3 1.2E+02 0.0025 32.5 11.0 68 553-625 187-254 (262)
302 PF00790 VHS: VHS domain; Int 54.1 59 0.0013 30.9 7.9 74 425-501 41-117 (140)
303 PF10272 Tmpp129: Putative tra 53.5 9.8 0.00021 42.1 2.7 35 296-330 302-353 (358)
304 PLN02189 cellulose synthase 53.0 9.5 0.00021 47.5 2.7 46 283-328 35-87 (1040)
305 KOG1243 Protein kinase [Genera 52.8 1.1E+02 0.0024 36.7 11.0 256 430-708 258-514 (690)
306 PF08324 PUL: PUL domain; Int 52.6 56 0.0012 34.5 8.3 135 568-703 123-268 (268)
307 KOG1058 Vesicle coat complex C 52.4 1.8E+02 0.0039 35.3 12.6 129 440-586 219-348 (948)
308 PLN02195 cellulose synthase A 51.4 11 0.00024 46.7 2.9 45 284-328 8-59 (977)
309 KOG1814 Predicted E3 ubiquitin 51.2 15 0.00033 40.8 3.6 59 281-343 183-251 (445)
310 KOG1060 Vesicle coat complex A 51.2 5.6E+02 0.012 31.6 16.8 206 473-710 39-247 (968)
311 KOG1991 Nuclear transport rece 51.2 1.5E+02 0.0033 36.9 12.1 144 522-669 380-534 (1010)
312 KOG0825 PHD Zn-finger protein 50.9 19 0.00042 43.0 4.6 59 275-348 89-159 (1134)
313 KOG3665 ZYG-1-like serine/thre 50.7 1.1E+02 0.0024 37.3 11.2 194 496-708 494-696 (699)
314 KOG1940 Zn-finger protein [Gen 50.5 11 0.00024 40.1 2.4 44 281-325 157-204 (276)
315 cd03567 VHS_GGA VHS domain fam 50.5 87 0.0019 30.0 8.3 76 425-501 37-115 (139)
316 PF10363 DUF2435: Protein of u 50.4 40 0.00087 29.9 5.6 69 426-502 3-72 (92)
317 KOG3002 Zn finger protein [Gen 49.8 15 0.00033 39.7 3.4 59 279-344 45-104 (299)
318 KOG4653 Uncharacterized conser 49.4 62 0.0013 39.6 8.4 168 531-709 745-918 (982)
319 KOG2933 Uncharacterized conser 49.2 1.1E+02 0.0024 33.3 9.5 136 555-704 89-229 (334)
320 KOG0567 HEAT repeat-containing 48.2 51 0.0011 34.9 6.7 92 554-667 187-280 (289)
321 PF12719 Cnd3: Nuclear condens 48.2 2.5E+02 0.0055 30.2 12.7 188 515-712 26-233 (298)
322 cd03567 VHS_GGA VHS domain fam 47.7 92 0.002 29.8 8.0 73 638-710 38-117 (139)
323 KOG4275 Predicted E3 ubiquitin 47.4 3.8 8.2E-05 43.3 -1.6 39 282-326 300-340 (350)
324 KOG1967 DNA repair/transcripti 45.7 1.3E+02 0.0027 37.3 10.2 183 426-619 815-1018(1030)
325 PF11707 Npa1: Ribosome 60S bi 45.6 4.5E+02 0.0097 28.9 15.4 153 471-628 58-240 (330)
326 PF14353 CpXC: CpXC protein 45.4 13 0.00028 34.8 1.8 46 282-327 1-48 (128)
327 smart00638 LPD_N Lipoprotein N 45.0 5.9E+02 0.013 30.1 17.1 165 516-704 358-540 (574)
328 KOG1078 Vesicle coat complex C 44.9 6.8E+02 0.015 30.8 18.1 107 468-580 240-360 (865)
329 KOG0301 Phospholipase A2-activ 44.5 2.3E+02 0.005 34.0 11.8 158 486-649 557-727 (745)
330 PF11865 DUF3385: Domain of un 43.5 1.6E+02 0.0036 28.7 9.3 145 554-707 10-155 (160)
331 PF14446 Prok-RING_1: Prokaryo 42.7 19 0.00041 28.6 2.0 27 282-308 5-35 (54)
332 cd03572 ENTH_epsin_related ENT 42.6 78 0.0017 29.7 6.5 72 639-710 39-120 (122)
333 PF08167 RIX1: rRNA processing 41.8 1.9E+02 0.0041 28.3 9.6 111 597-710 26-144 (165)
334 PRK14707 hypothetical protein; 41.6 1.2E+03 0.025 32.5 20.1 234 426-665 373-612 (2710)
335 PLN02436 cellulose synthase A 41.3 19 0.0004 45.1 2.7 46 283-328 37-89 (1094)
336 PF05290 Baculo_IE-1: Baculovi 40.9 27 0.00058 33.0 3.0 51 280-330 78-134 (140)
337 PLN02638 cellulose synthase A 40.6 19 0.00042 45.1 2.7 45 284-328 19-70 (1079)
338 PF10367 Vps39_2: Vacuolar sor 40.6 11 0.00023 33.9 0.4 35 276-310 72-108 (109)
339 PF03002 Somatostatin: Somatos 40.0 13 0.00028 22.5 0.5 10 760-769 7-16 (18)
340 KOG1991 Nuclear transport rece 39.9 5.8E+02 0.013 32.1 14.6 131 468-600 409-548 (1010)
341 PF00790 VHS: VHS domain; Int 39.5 75 0.0016 30.2 6.1 74 638-711 42-120 (140)
342 KOG2025 Chromosome condensatio 39.4 7.9E+02 0.017 30.0 17.3 111 430-551 89-199 (892)
343 PF10363 DUF2435: Protein of u 39.0 99 0.0021 27.4 6.3 70 599-670 6-75 (92)
344 KOG2114 Vacuolar assembly/sort 38.8 16 0.00035 44.1 1.6 43 279-325 837-880 (933)
345 PF01726 LexA_DNA_bind: LexA D 38.6 77 0.0017 26.1 5.2 48 131-187 5-52 (65)
346 KOG4739 Uncharacterized protei 38.5 15 0.00032 38.1 1.1 40 293-335 15-55 (233)
347 smart00531 TFIIE Transcription 38.3 18 0.00038 35.0 1.6 38 280-329 97-135 (147)
348 smart00288 VHS Domain present 38.2 1.2E+02 0.0025 28.7 7.1 73 638-710 37-112 (133)
349 KOG4718 Non-SMC (structural ma 38.0 20 0.00043 36.4 1.9 44 283-327 182-226 (235)
350 PF08216 CTNNBL: Catenin-beta- 37.4 30 0.00065 31.6 2.8 42 571-612 62-103 (108)
351 PF14726 RTTN_N: Rotatin, an a 37.4 2.5E+02 0.0055 25.2 8.6 74 632-706 24-97 (98)
352 PF12830 Nipped-B_C: Sister ch 37.2 2.9E+02 0.0064 27.6 10.3 116 555-676 9-131 (187)
353 cd00350 rubredoxin_like Rubred 36.6 27 0.00058 24.7 1.8 11 316-326 16-26 (33)
354 COG5098 Chromosome condensatio 36.6 1.1E+02 0.0024 36.6 7.7 105 556-667 301-415 (1128)
355 TIGR00634 recN DNA repair prot 36.4 7.9E+02 0.017 29.1 15.5 47 28-74 186-234 (563)
356 PLN02915 cellulose synthase A 36.3 24 0.00053 44.1 2.6 47 282-328 15-68 (1044)
357 KOG1812 Predicted E3 ubiquitin 36.2 25 0.00055 39.6 2.6 68 282-350 146-227 (384)
358 PHA02862 5L protein; Provision 35.8 26 0.00056 33.5 2.1 44 285-329 5-54 (156)
359 PRK11088 rrmA 23S rRNA methylt 35.3 18 0.0004 38.4 1.3 27 282-308 2-31 (272)
360 KOG2032 Uncharacterized conser 35.1 1.8E+02 0.004 33.5 8.9 149 553-706 253-413 (533)
361 PF11707 Npa1: Ribosome 60S bi 35.0 6.4E+02 0.014 27.6 16.0 164 428-593 58-246 (330)
362 KOG2062 26S proteasome regulat 34.7 1.5E+02 0.0032 35.9 8.4 136 551-704 551-689 (929)
363 PF14225 MOR2-PAG1_C: Cell mor 33.4 6.2E+02 0.013 27.0 16.8 161 488-666 77-253 (262)
364 PHA02825 LAP/PHD finger-like p 33.2 44 0.00096 32.6 3.3 47 281-328 7-59 (162)
365 KOG4265 Predicted E3 ubiquitin 33.2 25 0.00055 38.5 1.9 46 282-328 290-336 (349)
366 KOG2274 Predicted importin 9 [ 33.1 1.1E+03 0.023 29.7 15.2 155 514-671 529-693 (1005)
367 PF12830 Nipped-B_C: Sister ch 32.8 97 0.0021 31.1 6.0 68 639-712 9-77 (187)
368 PF08167 RIX1: rRNA processing 32.4 2.9E+02 0.0064 27.0 9.2 108 426-539 25-140 (165)
369 PF14726 RTTN_N: Rotatin, an a 32.4 1.4E+02 0.0031 26.8 6.2 69 594-663 28-96 (98)
370 KOG2956 CLIP-associating prote 31.7 4.6E+02 0.0099 30.3 11.3 141 556-704 331-472 (516)
371 COG0497 RecN ATPase involved i 31.1 9.6E+02 0.021 28.5 16.7 66 28-96 182-253 (557)
372 COG1592 Rubrerythrin [Energy p 31.1 31 0.00068 34.0 2.0 25 282-326 134-158 (166)
373 KOG2956 CLIP-associating prote 30.6 9E+02 0.02 28.0 14.5 140 516-667 330-477 (516)
374 COG5116 RPN2 26S proteasome re 30.5 1.4E+02 0.003 35.1 7.0 98 553-666 550-649 (926)
375 PF12530 DUF3730: Protein of u 30.5 6.3E+02 0.014 26.2 15.9 126 485-624 13-150 (234)
376 COG5218 YCG1 Chromosome conden 30.3 7.7E+02 0.017 29.4 12.8 100 595-702 90-192 (885)
377 COG5220 TFB3 Cdk activating ki 30.1 15 0.00032 37.8 -0.4 45 281-325 9-61 (314)
378 PRK14707 hypothetical protein; 30.0 1.7E+03 0.037 31.1 19.3 262 426-696 205-474 (2710)
379 KOG1020 Sister chromatid cohes 29.2 3.7E+02 0.008 35.4 11.0 127 531-670 795-924 (1692)
380 PF01347 Vitellogenin_N: Lipop 29.1 9.4E+02 0.02 28.6 14.6 93 553-664 485-586 (618)
381 cd00197 VHS_ENTH_ANTH VHS, ENT 29.0 2.8E+02 0.0062 25.0 8.0 70 639-708 38-114 (115)
382 COG5218 YCG1 Chromosome conden 28.8 4.7E+02 0.01 31.1 10.8 112 429-551 94-205 (885)
383 KOG2137 Protein kinase [Signal 28.7 2E+02 0.0044 34.6 8.3 132 472-610 388-522 (700)
384 KOG2025 Chromosome condensatio 28.3 2.3E+02 0.005 34.2 8.5 101 553-659 84-185 (892)
385 PF12231 Rif1_N: Rap1-interact 27.8 8.9E+02 0.019 27.0 16.0 179 440-624 6-203 (372)
386 PF11865 DUF3385: Domain of un 27.7 3.5E+02 0.0077 26.4 8.8 143 426-582 10-155 (160)
387 PF01347 Vitellogenin_N: Lipop 27.3 4.3E+02 0.0094 31.5 11.3 165 516-704 396-584 (618)
388 COG2176 PolC DNA polymerase II 27.0 51 0.0011 41.7 3.2 40 277-328 909-950 (1444)
389 PF06676 DUF1178: Protein of u 26.7 32 0.00069 33.3 1.2 23 299-326 9-41 (148)
390 cd00197 VHS_ENTH_ANTH VHS, ENT 26.6 3.8E+02 0.0082 24.2 8.3 74 426-500 37-113 (115)
391 cd00730 rubredoxin Rubredoxin; 26.4 30 0.00065 27.1 0.8 13 278-290 30-42 (50)
392 PF14569 zf-UDP: Zinc-binding 26.2 54 0.0012 28.0 2.3 46 283-328 10-62 (80)
393 TIGR01206 lysW lysine biosynth 25.8 35 0.00076 27.2 1.1 33 282-329 2-34 (54)
394 KOG1451 Oligophrenin-1 and rel 25.4 46 0.001 38.8 2.3 45 638-682 486-530 (812)
395 PF07191 zinc-ribbons_6: zinc- 25.4 9.9 0.00021 31.8 -2.2 41 282-328 1-41 (70)
396 PF06012 DUF908: Domain of Unk 25.3 2.5E+02 0.0054 30.9 8.0 76 571-646 238-324 (329)
397 KOG0314 Predicted E3 ubiquitin 25.3 37 0.00079 38.7 1.5 69 277-347 214-286 (448)
398 COG3813 Uncharacterized protei 25.1 64 0.0014 27.1 2.4 35 299-336 26-60 (84)
399 PHA03096 p28-like protein; Pro 25.1 42 0.00091 36.1 1.8 43 283-325 179-231 (284)
400 PLN02400 cellulose synthase 25.0 38 0.00083 42.6 1.7 45 284-328 38-89 (1085)
401 PF14666 RICTOR_M: Rapamycin-i 24.9 8E+02 0.017 25.5 12.8 129 568-708 77-224 (226)
402 smart00834 CxxC_CXXC_SSSS Puta 24.5 50 0.0011 24.0 1.6 33 281-327 4-36 (41)
403 KOG3899 Uncharacterized conser 24.4 39 0.00084 35.9 1.4 27 303-329 328-366 (381)
404 cd03565 VHS_Tom1 VHS domain fa 23.9 4.7E+02 0.01 24.9 8.7 76 425-501 37-114 (141)
405 PF14663 RasGEF_N_2: Rapamycin 23.9 1.9E+02 0.004 26.7 5.7 39 639-678 9-47 (115)
406 PF12906 RINGv: RING-variant d 23.7 57 0.0012 25.0 1.9 29 295-323 13-47 (47)
407 PF04499 SAPS: SIT4 phosphatas 23.0 5E+02 0.011 30.2 10.2 114 595-712 20-152 (475)
408 PF00301 Rubredoxin: Rubredoxi 22.7 35 0.00077 26.3 0.5 13 278-290 30-42 (47)
409 TIGR03847 conserved hypothetic 22.6 81 0.0018 31.2 3.1 29 306-334 142-174 (177)
410 PF10521 DUF2454: Protein of u 22.5 4.7E+02 0.01 27.9 9.4 71 554-625 119-203 (282)
411 PF07800 DUF1644: Protein of u 22.0 43 0.00094 32.6 1.1 21 281-301 1-21 (162)
412 KOG4231 Intracellular membrane 21.9 47 0.001 38.2 1.5 69 557-625 330-399 (763)
413 COG4530 Uncharacterized protei 21.8 62 0.0014 29.4 1.9 28 282-309 9-41 (129)
414 COG5116 RPN2 26S proteasome re 21.6 1.9E+02 0.004 34.1 6.0 66 595-669 550-617 (926)
415 PF05883 Baculo_RING: Baculovi 21.5 58 0.0013 30.9 1.8 43 282-325 26-77 (134)
416 PRK10869 recombination and rep 21.4 1.4E+03 0.03 27.1 18.5 142 28-193 182-337 (553)
417 KOG3842 Adaptor protein Pellin 21.1 88 0.0019 33.7 3.2 51 280-330 339-416 (429)
418 cd00729 rubredoxin_SM Rubredox 21.0 51 0.0011 23.5 1.0 10 317-326 18-27 (34)
419 KOG1992 Nuclear export recepto 21.0 4.3E+02 0.0094 32.6 9.0 192 469-666 498-732 (960)
420 COG5236 Uncharacterized conser 20.9 86 0.0019 34.2 3.1 61 267-327 46-107 (493)
421 KOG1832 HIV-1 Vpr-binding prot 20.9 3.9E+02 0.0085 33.3 8.6 105 567-682 674-787 (1516)
422 PF04423 Rad50_zn_hook: Rad50 20.7 43 0.00093 26.3 0.7 12 318-329 21-32 (54)
423 COG5242 TFB4 RNA polymerase II 20.6 49 0.0011 33.9 1.2 16 281-296 259-274 (296)
424 PRK12495 hypothetical protein; 20.0 1.4E+02 0.003 30.8 4.2 10 180-189 8-17 (226)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=286.98 Aligned_cols=280 Identities=21% Similarity=0.189 Sum_probs=246.4
Q ss_pred hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 425 FERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
...+..++..|.++. +.+.|..|+.+|+.+++.+++||..|++ .|+||.|+.+|.+ ++..+|++|+.+|.+++.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s----g~~~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS----GTLGAKVNAAAVLGVLCK 87 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhc
Confidence 467889999998652 5688999999999999999999999997 9999999999988 789999999999999986
Q ss_pred cCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc---CCcccccc-ccCchHHHHHhhcCCC--CHHHHHH
Q 004073 503 NNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL---DDAKPIIG-SSHAVPFLVELCKGKT--EHQCKLD 574 (775)
Q Consensus 503 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~---~~~k~~I~-~~g~i~~LV~LL~~~~--~~~~k~~ 574 (775)
+++++..|+..|++|+|+.+|++|+. +++|+++|++|+.+ ++++..|+ ..|+||+|+.+|+++. +..+++.
T Consensus 88 -~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 88 -EEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred -CHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 68899999999999999999999875 68899999999987 55665554 5899999999999872 2235677
Q ss_pred HHHHHHHhcCCCCChHH-HHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCC-C
Q 004073 575 ALHALYNLSTIPSNIPN-LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTG-E 651 (775)
Q Consensus 575 Al~aL~nLs~~~~nk~~-iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~-s 651 (775)
|+.+|+|||.+.+|+.. ++++|+|+.|+.+|.++++.+++.|+++|.+++.+ ++++..+++. |+|+.|+++|+++ +
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIea-GaVP~LV~LL~sg~~ 245 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDA-GAVKQLLKLLGQGNE 245 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHccCCC
Confidence 78999999999999865 58999999999999999999999999999999876 6688888874 9999999999875 5
Q ss_pred HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCC---------hHHHHHHHHHHHHhHhc
Q 004073 652 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS---------TRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~---------~~~k~kA~~LL~~L~~~ 710 (775)
+.+|++|+++|.+||+++.+++..+++.|+|+.|+.++.... ...++.|.+.|.++.+.
T Consensus 246 ~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 246 VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999887544 34589999999998864
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=1.3e-25 Score=280.54 Aligned_cols=282 Identities=21% Similarity=0.221 Sum_probs=244.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +...|..|++.|+++++++++++..|+++|+||+|+++|.+ .+..+|++|+|+|.|++.+.+
T Consensus 446 ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s----~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 446 EGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET----GSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCcH
Confidence 4678899999988 89999999999999999999999999999999999999998 789999999999999987444
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcc------------------------------------
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK------------------------------------ 547 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k------------------------------------ 547 (775)
+.+..+.++|++|+|+++|++++. ++.|+++|++|+...+..
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 445555588999999999999876 578999999986322111
Q ss_pred --ccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 548 --PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 548 --~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
..+...|+++.|++||+++ +...++.|+++|.|++.+. +++..++.+|+|++|+.+|.+++..++.+++++|.||+
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 0111368999999999999 9999999999999999654 57888999999999999999999999999999999999
Q ss_pred CCc--ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHH
Q 004073 625 ASA--AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702 (775)
Q Consensus 625 ~~~--e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~ 702 (775)
.+. +.+..++. .|+|+.|+++|...+..+++.|+.+|.+|+... +.+..+.++|+|+.|+.++.+|+++.|++|++
T Consensus 680 ~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~ 757 (2102)
T PLN03200 680 RSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAAR 757 (2102)
T ss_pred hCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHH
Confidence 643 34456666 599999999999999999999999999999987 57788889999999999999999999999999
Q ss_pred HHHHhHhccCCCC
Q 004073 703 LLMLFREQRQRDH 715 (775)
Q Consensus 703 LL~~L~~~~~~~~ 715 (775)
.|..|....+.++
T Consensus 758 AL~~L~~~~~~~~ 770 (2102)
T PLN03200 758 ALAQLLKHFPVDD 770 (2102)
T ss_pred HHHHHHhCCChhH
Confidence 8888877666544
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.4e-25 Score=242.10 Aligned_cols=281 Identities=18% Similarity=0.225 Sum_probs=252.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..||..|....+...|.+|+++|.++|..+.+.-..++++|++|.++.+|.+ .+..++++|+|+|.|++.+...
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCChH
Confidence 466788888766578999999999999999999999999999999999999998 8999999999999999987788
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.|..+++.|++++|+.++..... ..+++|+|.||+.+..-...+.. ..++|.|+.+|.+. |+++..+|+|||.+|
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 89999999999999999988764 57899999999998765555554 68999999999998 999999999999999
Q ss_pred cCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHH
Q 004073 583 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVS 660 (775)
Q Consensus 583 s~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~ 660 (775)
+-+. +....++++|+++.|+++|...+..++..|+.++.|++.+.+.+...+...|+++.|..++. +....++..|++
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 9655 45666678999999999999988888899999999999988888877666799999999998 556669999999
Q ss_pred HHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 661 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 661 ~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
++.||+.++.++.+.++++|++|.|+.++.++..++|+.|++.+.++..-..
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999998764433
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.7e-24 Score=223.62 Aligned_cols=278 Identities=21% Similarity=0.262 Sum_probs=250.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
++..|+...... ..++|+.++..|.+|+.. ++||..|+..|++.+|.++-++ .|..+|.++..+|+|+. +..+
T Consensus 127 Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks----kdirvqrnatgaLlnmT-hs~E 199 (550)
T KOG4224|consen 127 GLDLLILQMMTD-GVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS----KDIRVQRNATGALLNMT-HSRE 199 (550)
T ss_pred ChHHHHHHhcCC-CcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc----chhhHHHHHHHHHHHhh-hhhh
Confidence 455666666666 789999999999999987 7899999999999999997776 89999999999999996 5788
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccC--chHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSH--AVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g--~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
||..++.+|++|.|+.+|++++. +..++.++.+++.+..++..+.+.+ .||.||.|++++ ++.++-.|.-||.||
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhh
Confidence 99999999999999999999886 5779999999999999999998876 999999999999 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC-CHHHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAVSC 661 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~-s~~~~e~Av~~ 661 (775)
+++.+-...++++|.+|.|++||+++.....-..++.+.|++-++-+..-|.+. |++.+||.+|+.+ +.++|-+|+.+
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~da-gfl~pLVrlL~~~dnEeiqchAvst 357 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADA-GFLRPLVRLLRAGDNEEIQCHAVST 357 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecc-cchhHHHHHHhcCCchhhhhhHHHH
Confidence 999999999999999999999999887777788899999999999888888875 9999999999976 55699999999
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
|++|+..+..++..+.+.|+||+|..|+.++...+|..-...+..|.-.+..
T Consensus 358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 358 LRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred HHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 9999988878899999999999999999999999998888777777655444
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.9e-23 Score=217.31 Aligned_cols=272 Identities=22% Similarity=0.278 Sum_probs=242.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHH
Q 004073 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELM 511 (775)
Q Consensus 432 l~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i 511 (775)
+.+|...++..+|+.+..+|-+++.. .+||..++.+|++|.||.+|++ .|..+|+.++++|.|++. +..+|+.+
T Consensus 172 ltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaV-d~~~Rk~L 245 (550)
T KOG4224|consen 172 LTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAV-DRRARKIL 245 (550)
T ss_pred hHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhh-hHHHHHHH
Confidence 33466555889999999999999865 8899999999999999999999 899999999999999987 68889999
Q ss_pred HhhC--cHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC
Q 004073 512 LAAG--VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 512 ~~~G--~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
+++| .+|.|+.++++++++ ..|.-+|.+|+...+|...|.+.|++|.||+||+++ .....-....++.|++.++.
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIHPL 324 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccccC
Confidence 9888 999999999999885 457778899999999999999999999999999988 66677778889999999999
Q ss_pred ChHHHHHcCcHHHHHHhccCCC-hHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 588 NIPNLLSAGIISGLQSLAVPGD-PMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~~-~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
|-..++++|.+.+||++|..++ ..++-.|..+|+||+.+ ..++..|.+ .|+|+.+..++..++-.+|+..-+++..|
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 9999999999999999997754 55889999999999984 556667776 59999999999999999999999999999
Q ss_pred hcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 666 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 666 c~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
+..+ ..+..+.+.|.++.|+.+..+.+.+++.+|+..|-+|+...+
T Consensus 404 al~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 404 ALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred Hhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 8776 578889999999999999999999999999999988875433
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=2.5e-22 Score=207.36 Aligned_cols=278 Identities=18% Similarity=0.200 Sum_probs=242.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..|+..+.+....-.|.+|+++|.+++.+.......++++|++|.++++|.+ .+..+.++++|+|.|++-+++..
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s----~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS----TEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC----chHHHHHHHHHHhccccCCchhH
Confidence 44566666443255678999999999999887777778999999999999998 78899999999999999777778
Q ss_pred hHHHHhhCcHHHHHHHhccCCh----HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 508 KELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~----~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
|..+.+.|++.+|+.+|.+... ..++.|+|.||+....-...-.. +.++|.|.+|+.+. ++++..+|+|||..|
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYl 270 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR-DPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHh
Confidence 9999999999999999986543 37899999999987544332222 57899999999998 999999999999999
Q ss_pred cCCCCC-hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004073 583 STIPSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 583 s~~~~n-k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
+-.+.. ...+++.|+.+.|+++|.+.+..++..|+..+.|+....+.+..++...|+++.+..+|.+....++..|+++
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 977654 4556689999999999999999999999999999999988888777767999999999999888999999999
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+.|+..++.+..+.+++...+|+|+.++....-.+|+.|++.+.+....
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999887654
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.8e-21 Score=212.71 Aligned_cols=279 Identities=20% Similarity=0.200 Sum_probs=241.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh-hHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEA-RVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~n-r~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
....+..+.+. +...|..+...+|.+....... -..+...|.||.||.+|... .++.+|..|+|+|.|+|++..+
T Consensus 68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC---CChhHHHHHHHHHHHHhcCchh
Confidence 45667778888 8888999999999988653322 22344459999999999862 5689999999999999998888
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.-..++++|++|.++.+|.+++. ++.|+|+|.|++.+. .+|..+...|++++|+.++...........+.|+|.|||
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 88889999999999999999886 588999999999864 678888899999999999998733478999999999999
Q ss_pred CCCCChHHHHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 584 ~~~~nk~~iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
.+..-...+.. ..++|.|..++.+.+..+...|+|+|.+|+..+..+..++...|+++.||++|...++.++-.|++++
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 88765555444 77999999999999999999999999999987777766665579999999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHHHhHhc
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~~ 710 (775)
.|+..++....+.++..|+++.|..|+. +.....|+.|++++.++..-
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG 352 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG 352 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999888 56777899999999998753
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.85 E-value=4.8e-22 Score=168.34 Aligned_cols=72 Identities=47% Similarity=0.815 Sum_probs=63.9
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|+++++..+|+||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 599999999999999999999999999999999999989999999999999999999999999999999985
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.85 E-value=8.5e-21 Score=196.16 Aligned_cols=277 Identities=17% Similarity=0.172 Sum_probs=236.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..++.+...|-+. +.+.|..|+.+.|.+... ....-..+.++|.+|.+|.|+... .....|-.|+|+|.|++++.
T Consensus 71 ~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 71 SELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhccCc
Confidence 4567888888888 999999999999988754 333445678899999999999652 45678899999999999866
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCC-CCHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALY 580 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~-~~~~~k~~Al~aL~ 580 (775)
......++++|++|.++.+|.++.. ++.|+|+|.|++.+. .++..+...|++.+|+.+|.+. .+.....++.|+|.
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 6666667899999999999998875 688999999999875 5788888999999999999865 34588999999999
Q ss_pred HhcCCCC---ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHH
Q 004073 581 NLSTIPS---NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 581 nLs~~~~---nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~ 657 (775)
|||.... +-..+ .-++|.|..|+...++.+.-.|+|+|..|+..+..+..++-..|+-..||++|.+.+..++..
T Consensus 227 NlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 227 NLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred HhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 9996432 22222 237899999999999999999999999999988776655555699999999999999999999
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
|++...|+..++....+.+++.|+++.+..|+.+...++|+.|++.+.++.
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc
Confidence 999999999998889999999999999999999999999999999887764
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=3.5e-17 Score=191.20 Aligned_cols=278 Identities=20% Similarity=0.245 Sum_probs=232.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++ +.+....++..|+.|+-. .+|+..|++.|+|+.|++++.+ .+..++..++++|+|||. +.+
T Consensus 291 iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s----~~~~l~~~aLrlL~NLSf-d~~ 363 (708)
T PF05804_consen 291 IVSLLVKCLDRE-NEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS----ENEDLVNVALRLLFNLSF-DPE 363 (708)
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhCc-CHH
Confidence 455677778777 899999999999999876 5799999999999999999998 788999999999999986 788
Q ss_pred hhHHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 004073 507 NKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 586 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~ 586 (775)
+|..|++.|++|.|+.+|..++.+..+.++|++||.++++|..+...+++|.|+++|-++.+.++...++.++.|||.++
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 99999999999999999998877788999999999999999999999999999998876646777888999999999999
Q ss_pred CChHHHHHcCcHHHHHHhc-cC-------------------------------------CChHHHHHHHHHHHHHhCCcc
Q 004073 587 SNIPNLLSAGIISGLQSLA-VP-------------------------------------GDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 587 ~nk~~iv~aG~V~~Lv~LL-~~-------------------------------------~~~~i~e~al~~L~nLa~~~e 628 (775)
.|...+.+.|+++.|++.. .. .+..+.-+++++|+||...+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 9999999988998887632 11 133455679999999998888
Q ss_pred cHHHHhhCCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHH
Q 004073 629 GKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLL 704 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL 704 (775)
.+..++...+.+|.|.++|..+ .++..-.++..+..+|... .+...+.+.|+++.|+.|+... +++.--.....+
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~-~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP-ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH-HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 8899988779999999999865 4567778888888888654 7888889999999999988764 455554444444
Q ss_pred HHhHhccC
Q 004073 705 MLFREQRQ 712 (775)
Q Consensus 705 ~~L~~~~~ 712 (775)
..|-.+.+
T Consensus 603 ~~ll~h~~ 610 (708)
T PF05804_consen 603 YQLLFHEE 610 (708)
T ss_pred HHHHcChH
Confidence 44444433
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.71 E-value=2.4e-16 Score=184.33 Aligned_cols=216 Identities=21% Similarity=0.235 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhc
Q 004073 487 SYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK 564 (775)
Q Consensus 487 ~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~ 564 (775)
..+...++.+|+|++. +.+++..|++.|+++.|+++|++++. ...++++|.+||...+||..+++.|+|++|++++.
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3455678889999985 78899999999999999999998875 35688899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004073 565 GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
++ +..+...|+++|+|||.++++|..|++.|+||.|+.+|.+++.. ..|+.+|.+|+..+++|..+..+ ++|+.|+
T Consensus 342 s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~--~val~iLy~LS~dd~~r~~f~~T-dcIp~L~ 417 (708)
T PF05804_consen 342 SE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFR--EVALKILYNLSMDDEARSMFAYT-DCIPQLM 417 (708)
T ss_pred CC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchH--HHHHHHHHHhccCHhhHHHHhhc-chHHHHH
Confidence 98 99999999999999999999999999999999999999876544 78999999999999999988876 8999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 645 TVLDTG-ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 645 ~lL~~~-s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
++|..+ ++.++..+++++.||+... .+.+.+.+.|+++.|+.......+. -..+++|+++.+.
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD 481 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence 987754 5566667888889988876 7889999999999999777655432 2336777777765
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.66 E-value=8.2e-17 Score=132.49 Aligned_cols=63 Identities=57% Similarity=0.919 Sum_probs=60.5
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 345 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~ 345 (775)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..|++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 77999999999999999999999999998
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.61 E-value=5.5e-15 Score=174.31 Aligned_cols=265 Identities=18% Similarity=0.160 Sum_probs=222.1
Q ss_pred HHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccC--------CCHHHHHHHHHHHHHhhccCCchhHHHHh-hCc
Q 004073 446 NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCE--------RNSYAQEIGAMALFNLAVNNNRNKELMLA-AGV 516 (775)
Q Consensus 446 ~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~--------~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-~G~ 516 (775)
.|+..|-.+.. +++.|..|.+.|++..+-.||.-.+.- ..-.++..|.++|.||..++..||..+.. .|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 55555555554 589999999999999999988643211 23467899999999999988889988875 689
Q ss_pred HHHHHHHhccCCh--HHHHHHHHhcccccC--CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CCChHH
Q 004073 517 IPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPN 591 (775)
Q Consensus 517 i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~--~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~nk~~ 591 (775)
+..||..|.+... .+.-+.+|.||+... ..|..+.+.|-+.+|+..--........+..+.|||||+.+ .+||..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999998774 466888999999853 34667777899999987654433667899999999999964 589999
Q ss_pred HHH-cCcHHHHHHhccC----CChHHHHHHHHHHHHHhC----CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 592 LLS-AGIISGLQSLAVP----GDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 592 iv~-aG~V~~Lv~LL~~----~~~~i~e~al~~L~nLa~----~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
|.. -|++..||.+|.. ....+.|.+-+||.|+++ +++.|.-+.++ .|+..|+..|++.+-.+-.+++++|
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~-NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH-NCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh-hHHHHHHHHhhhcceEEeecchhhh
Confidence 998 7999999999864 347889999999999755 66666666665 9999999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
|||...+++..+++++.|+|+.|..|+.+.+..+-+.+++.|++|-.+++
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999988883
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=2.4e-13 Score=141.49 Aligned_cols=273 Identities=13% Similarity=0.139 Sum_probs=228.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhh
Q 004073 435 LNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA 514 (775)
Q Consensus 435 L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~ 514 (775)
|.+..+...-.+++.+|-.+....++ +.++-+...++.+|.... ++.++-..++..+..-+..++.||..+++.
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~ 188 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMEL 188 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34444778888999999999987764 557788899999997533 566777778888888777889999999999
Q ss_pred CcHHHHHHHhcc-CCh--HHHHHHHHhcccccCCcccc----------ccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 515 GVIPLLEKMISN-SNS--HGAATALYLNLSFLDDAKPI----------IGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 515 G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~~~k~~----------I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
++++.+...|.. |.+ ...+++++.-|...|+.|.. |...|++..|++.|.-+.++.....++.+|..
T Consensus 189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKA 268 (461)
T ss_pred hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 999999988865 333 36688889888888776654 44467889999999988889999999999999
Q ss_pred hcCCCCChHHHHHcCcHHHHHHhccCC----ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc--CCCHHHH
Q 004073 582 LSTIPSNIPNLLSAGIISGLQSLAVPG----DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD--TGELIEQ 655 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~LL~~~----~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~--~~s~~~~ 655 (775)
|+..++-+..++++|++..|++++.+. +..+...++..|..|+.++..+..|++. |+.+.++.++. ..+|.+-
T Consensus 269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~Vi 347 (461)
T KOG4199|consen 269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKIITLALRHSDDPLVI 347 (461)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHHHHHHHcCCChHHH
Confidence 999999999999999999999999762 2345578999999999999999999996 99999999886 4789999
Q ss_pred HHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-C-ChHHHHHHHHHHHHhHhccCCC
Q 004073 656 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-G-STRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 656 e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g-~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
+.++.++..||-.++++...+++.|+-...++-+.. + ...++++|+.++|++....+..
T Consensus 348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999988887766554 3 4567899999999998665544
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.57 E-value=3.5e-14 Score=162.76 Aligned_cols=280 Identities=20% Similarity=0.171 Sum_probs=223.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.....+.+|.+. +..+|-.|+..|..++..+.+.|..+.+.|+|+.||.+|.+ .+..+|.+|+++|.||......
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~----~~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH----RNDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC----CcHHHHHHHHHHHHhhhcccCC
Confidence 466778889888 89999999999999999999999999999999999999998 7899999999999999876665
Q ss_pred --hhHHHHhhCcHHHHHHHhcc-CC-h-HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCC-------------C
Q 004073 507 --NKELMLAAGVIPLLEKMISN-SN-S-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT-------------E 568 (775)
Q Consensus 507 --nk~~i~~~G~i~~Lv~lL~s-~~-~-~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~-------------~ 568 (775)
||..|.+.++||.++++|+. ++ + ++..+++|.||+..|..|..|. ..++..|..-+-.+. +
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH-HHHHHHHHHhhcccccccCCCCccccccc
Confidence 99999999999999999985 33 2 6889999999999988888776 456666665553221 2
Q ss_pred HHHHHHHHHHHHHhcC-CCCChHHHHH-cCcHHHHHHhcc------CCChHHHHHHHHHHHHHhCCcc------------
Q 004073 569 HQCKLDALHALYNLST-IPSNIPNLLS-AGIISGLQSLAV------PGDPMWTEKSLAVLLNLAASAA------------ 628 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~-~~~nk~~iv~-aG~V~~Lv~LL~------~~~~~i~e~al~~L~nLa~~~e------------ 628 (775)
..+..++..+|.|+++ ..+.|.+|.+ .|.|..|+..+. +.+...+|.|+.+|.||+-.-+
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 5688899999999997 6678888888 899999999875 2355667999999999964211
Q ss_pred -------------------cHH-HHh---------------------hCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhh
Q 004073 629 -------------------GKE-EMN---------------------STPGLVSGLATVLD-TGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 629 -------------------~~~-~i~---------------------~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc 666 (775)
.+. ... -++.+|..-..+|. +..+.+.|.++++|.||+
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT 547 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence 000 000 01122333333444 467899999999999999
Q ss_pred cCC----hHhHHHH-HHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 667 NGN----EKCCQMV-LQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 667 ~~~----~~~~~~v-~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
.+. ...+..+ .++.+.+.|+.|+.++++++.+-++.+|++|+....
T Consensus 548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence 653 2345555 788899999999999999999999999999986543
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=7.1e-12 Score=130.65 Aligned_cols=264 Identities=13% Similarity=0.110 Sum_probs=216.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC---------chhHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN---------RNKEL 510 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~---------~nk~~ 510 (775)
+.++-...+.-++.-+-.++.||+.+.+.|+.+.+...|... ....+.+.+.+++..|...++ .....
T Consensus 160 ~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ 236 (461)
T KOG4199|consen 160 SEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE---GKTRTVRELYDAIRALLTDDDIRVVFGQAHGHART 236 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCCCceeeecchhhHHHHH
Confidence 677888888888888888999999999999999999888652 233677888999999865333 23455
Q ss_pred HHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCC---HHHHHHHHHHHHHhcC
Q 004073 511 MLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTE---HQCKLDALHALYNLST 584 (775)
Q Consensus 511 i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~---~~~k~~Al~aL~nLs~ 584 (775)
|+..|++..|+..|..+-. -..+..+|..|+..++....|.+.|++..|++++.+... ....+.++..|..|+.
T Consensus 237 ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG 316 (461)
T KOG4199|consen 237 IAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG 316 (461)
T ss_pred HHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC
Confidence 7788899999999986532 467888899999999999999999999999999987312 3356788999999999
Q ss_pred CCCChHHHHHcCcHHHHHHhcc--CCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcC--CCHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAV--PGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAV 659 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~--~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~--~s~~~~e~Av 659 (775)
++++|..+|+.|+.+.++.++. ..++.+.+.+++++..||- .+++-..+++. |+-...|..|+. .-..+|.+|+
T Consensus 317 ~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~-G~a~~avqAmkahP~~a~vQrnac 395 (461)
T KOG4199|consen 317 SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEA-GAADLAVQAMKAHPVAAQVQRNAC 395 (461)
T ss_pred CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhc-chHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999999999763 4688999999999999986 66777777774 777888888985 3457899999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..+.||..++.+++..++..| +..|+......++..+..|...||-|.
T Consensus 396 ~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 396 NMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 999999999878888877775 777887777777778888888888764
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.47 E-value=3.2e-12 Score=146.81 Aligned_cols=283 Identities=17% Similarity=0.119 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh-
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA- 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~--nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs- 501 (775)
..+|..+|..|.+. +.++|+.|+.+||+|.-++.. |+..|.+.|+|+.|+++|... .|.++++....+|.||+
T Consensus 274 lggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 274 LGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHT---QDDEVRELITGILWNLSS 349 (717)
T ss_pred hccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhh---cchHHHHHHHHHHhcccc
Confidence 35678889999988 999999999999999976554 999999999999999999864 35555555555555555
Q ss_pred -----------------------------------------------------ccCCchhHHHHh-hCcHHHHHHHhccC
Q 004073 502 -----------------------------------------------------VNNNRNKELMLA-AGVIPLLEKMISNS 527 (775)
Q Consensus 502 -----------------------------------------------------~~~~~nk~~i~~-~G~i~~Lv~lL~s~ 527 (775)
....+.|..|.+ .|.|..|+.++++.
T Consensus 350 ~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~ 429 (717)
T KOG1048|consen 350 NDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA 429 (717)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence 223345677765 68899999888641
Q ss_pred ------C--hHHHHHHHHhcccccCC------c---------------------------cc-------------c----
Q 004073 528 ------N--SHGAATALYLNLSFLDD------A---------------------------KP-------------I---- 549 (775)
Q Consensus 528 ------~--~~~~AaaaL~~Ls~~~~------~---------------------------k~-------------~---- 549 (775)
+ ..++++.+|.||+.--+ + +. .
T Consensus 430 i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pk 509 (717)
T KOG1048|consen 430 IQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPK 509 (717)
T ss_pred HHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCC
Confidence 1 24889999999985211 0 00 0
Q ss_pred ----ccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC-----ChHHH-HHcCcHHHHHHhccCCChHHHHHHHHH
Q 004073 550 ----IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-----NIPNL-LSAGIISGLQSLAVPGDPMWTEKSLAV 619 (775)
Q Consensus 550 ----I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~-----nk~~i-v~aG~V~~Lv~LL~~~~~~i~e~al~~ 619 (775)
+-...+|.+=..+|....+....++++.||-||+.... .+..+ .+..++++|++||..++..++..++.+
T Consensus 510 G~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~ 589 (717)
T KOG1048|consen 510 GSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGA 589 (717)
T ss_pred CceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHH
Confidence 00011222323334433377899999999999985443 34444 567899999999999999999999999
Q ss_pred HHHHhCCcccHHHHhhCCCcHHHHHHHhcCC------CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC-
Q 004073 620 LLNLAASAAGKEEMNSTPGLVSGLATVLDTG------ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG- 692 (775)
Q Consensus 620 L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~------s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g- 692 (775)
|.||+.+..++..|.. ++++.||+.|..+ +.++-..++.+|+++...+..+...+.+.+++++|+.|..+.
T Consensus 590 LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 590 LRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred HhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC
Confidence 9999999999999884 7999999999753 357788889999999999999999999999999999888774
Q ss_pred ChHHHHHHHHHHHHhHhccCC
Q 004073 693 STRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 693 ~~~~k~kA~~LL~~L~~~~~~ 713 (775)
+++.-+.|..+|..|+.+.+=
T Consensus 668 S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 668 SPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 568888899999888766543
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.44 E-value=7.6e-12 Score=131.10 Aligned_cols=191 Identities=23% Similarity=0.215 Sum_probs=164.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|...+++.+|.+|+.++.+.+.. +.++..|.+.|+++.+..+|.+ +++.+++.|+.+|-|++. +.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~----p~~~vr~~AL~aL~Nls~-~~ 85 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLND----PNPSVREKALNALNNLSV-ND 85 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCC----CChHHHHHHHHHHHhcCC-Ch
Confidence 56789999998776899999999999998764 6899999999999999999998 899999999999999986 67
Q ss_pred chhHHHHhhCcHHHHHHHhccCC--h--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSN--S--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~--~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
+|+..|-. .++.+...+.+.. + +..++.+|.+|+..+++...+. +.++.|+.||..| +..++..++++|.|
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G-~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSG-SEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 77776533 5777776554432 2 4678899999999999988885 5799999999999 99999999999999
Q ss_pred hcCCCCChHHHHHcCcHHHHHHhccCC-ChHHHHHHHHHHHHHhCCc
Q 004073 582 LSTIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~LL~~~-~~~i~e~al~~L~nLa~~~ 627 (775)
||.++.+...++.++++..++.|+... +..+...++.+..||..+-
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999764 5777889999999997643
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.39 E-value=1.3e-11 Score=129.28 Aligned_cols=195 Identities=22% Similarity=0.235 Sum_probs=168.7
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc
Q 004073 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF 542 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~ 542 (775)
+.+++.++.|+.+|... .|+.+|+.+..+|.|.+. .+.++..|.+.|+++.+..+|.+++. ++.|+.+|.|++.
T Consensus 8 ~l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST---EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred CcCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 46778899999999863 799999999999999975 78899999999999999999999876 5789999999999
Q ss_pred cCCccccccccCchHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHH
Q 004073 543 LDDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 543 ~~~~k~~I~~~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~ 621 (775)
..+++..|- ..++.+.+.+.+. .+..++.+++++|.||+...+.+..+. +.++.|+.+|..++..++..++.+|.
T Consensus 84 ~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 84 NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999885 3577777655443 467899999999999998887776664 47999999999999999999999999
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcC
Q 004073 622 NLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~-s~~~~e~Av~~L~~Lc~~ 668 (775)
||+.++.....++.. .++..++.++... +.+....++.++.+|..+
T Consensus 160 nLS~np~~~~~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 160 NLSENPDMTRELLSA-QVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HhccCHHHHHHHHhc-cchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999998888875 7899999999864 677889999999999753
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=5.5e-11 Score=128.58 Aligned_cols=256 Identities=19% Similarity=0.245 Sum_probs=199.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchh
Q 004073 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 508 (775)
Q Consensus 429 ~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk 508 (775)
.-||.-|... +.+.-.-++.-|..|.-- .+|+..|.+.|.|+.|+++... .+++.....++.|+||+. +..++
T Consensus 307 ~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSF-D~glr 379 (791)
T KOG1222|consen 307 AMLVKALDRS-NSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSF-DSGLR 379 (791)
T ss_pred HHHHHHHccc-chHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccc-ccccc
Confidence 3455566655 666666666667766654 5799999999999999999988 789999999999999986 67899
Q ss_pred HHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCC
Q 004073 509 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 588 (775)
Q Consensus 509 ~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~n 588 (775)
..|+..|.+|.|+.+|.+.....-|+.+|+.+|+++..|.+++-..+|+.|.+.+-.+.+.++-.+.+..-.|||.+..|
T Consensus 380 ~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 99999999999999999988788899999999999999999999999999999887775555555555445688888888
Q ss_pred hHHHHHcCcHHHHHHh-cc-------------------------------------CCChHHHHHHHHHHHHHhCCcccH
Q 004073 589 IPNLLSAGIISGLQSL-AV-------------------------------------PGDPMWTEKSLAVLLNLAASAAGK 630 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~L-L~-------------------------------------~~~~~i~e~al~~L~nLa~~~e~~ 630 (775)
...+++..++..|++. +. +.+....-+|+++|+||.-..-.+
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 8777776666665552 21 112234457999999999988999
Q ss_pred HHHhhCCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC
Q 004073 631 EEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG 692 (775)
Q Consensus 631 ~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g 692 (775)
..|+.+...||.+-..|..| ..+..-..+-.+..++. +..+...+..+|+|+.|++|+..+
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhh
Confidence 99999999999999999865 22333333333344333 446777777889999999988765
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=1.5e-10 Score=137.63 Aligned_cols=273 Identities=16% Similarity=0.100 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchh--------------ccCCCHHHHHHHHHHHHHhhccCC
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESA--------------VCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~--------------~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+.+.+..|-.+|.++....++-+..=.+.-+++.|=++.... .+..+..-...|+.+|..+++ ++
T Consensus 251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DE 329 (2195)
T KOG2122|consen 251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DE 329 (2195)
T ss_pred hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cH
Confidence 456788888999999887665544333333444333222210 000122223477888999986 78
Q ss_pred chhHHHHhhCcHHHHHHHhcc-----CC-h--------HHHHHHHHhcccccCC-ccccccc-cCchHHHHHhhcCCCCH
Q 004073 506 RNKELMLAAGVIPLLEKMISN-----SN-S--------HGAATALYLNLSFLDD-AKPIIGS-SHAVPFLVELCKGKTEH 569 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s-----~~-~--------~~~AaaaL~~Ls~~~~-~k~~I~~-~g~i~~LV~LL~~~~~~ 569 (775)
+.|..|-+-|++..|.++|.- +. + +..|.-+|.||...+. ||..+-. .|++..+|..|.+. ..
T Consensus 330 EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-pe 408 (2195)
T KOG2122|consen 330 EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PE 408 (2195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hH
Confidence 899999999999999988742 21 1 2448888999998775 6776654 79999999999998 77
Q ss_pred HHHHHHHHHHHHhcCC-CCC-hHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHH
Q 004073 570 QCKLDALHALYNLSTI-PSN-IPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~-~~n-k~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~ 645 (775)
++...-+.+|.||+=. +.| +..+-+.|-|..|+. .|...........|.+||||+. +.+++..|+...|++..||.
T Consensus 409 eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg 488 (2195)
T KOG2122|consen 409 ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVG 488 (2195)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHh
Confidence 8999999999999943 334 555667999999999 5665555666889999999977 67999999999999999999
Q ss_pred HhcCC----CHHHHHHHHHHHHHhhc---CChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCCC
Q 004073 646 VLDTG----ELIEQEQAVSCLFLLCN---GNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 646 lL~~~----s~~~~e~Av~~L~~Lc~---~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
+|... .-.+-|+|-+||.|+.+ ....+++.+.+...+..|+..+++.+-.+--+|+..|++|..-...+
T Consensus 489 ~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D 564 (2195)
T KOG2122|consen 489 TLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED 564 (2195)
T ss_pred hccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH
Confidence 99843 45789999999999885 34578999999999999999999888888888888888886544443
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.16 E-value=3.1e-10 Score=104.32 Aligned_cols=117 Identities=27% Similarity=0.274 Sum_probs=104.7
Q ss_pred ccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc
Q 004073 550 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 550 I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e 628 (775)
+.+.|+++.|+++|.++ +...+..|+++|.+++.+ ++++..+++.|+++.|+++|.+.+..++..++++|.||+....
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 44579999999999998 899999999999999987 6788899999999999999999999999999999999999875
Q ss_pred cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 629 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
....+....|+++.|+++|...+..+++.|+.+|.+||.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 444443335999999999999999999999999999974
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.14 E-value=7.2e-09 Score=119.90 Aligned_cols=271 Identities=17% Similarity=0.195 Sum_probs=210.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...|.+. +..+|.-++..|+.++.++......+.+.+.++.++..|.. +|..+...|+.+|.+++. +...-.
T Consensus 81 ~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~-~~~~~~ 154 (503)
T PF10508_consen 81 FLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD----PDLSVAKAAIKALKKLAS-HPEGLE 154 (503)
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhC-CchhHH
Confidence 445577777 89999999999999998887777778889999999999988 899999999999999985 555666
Q ss_pred HHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 586 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~ 586 (775)
.+...+.++.|..++...++ +-.+..++.+++.. ++....+...|.++.+++.|+++ |.-++.+|+..|..|+..+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcCh
Confidence 67788889999999988554 56677777777654 45566666789999999999997 9999999999999999988
Q ss_pred CChHHHHHcCcHHHHHHhccCC--Ch---H-HHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004073 587 SNIPNLLSAGIISGLQSLAVPG--DP---M-WTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 587 ~nk~~iv~aG~V~~Lv~LL~~~--~~---~-i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
.+...+.+.|+++.|+.++.+. ++ . ..-..+....+++.... ..-+...+..+..|.+++.+.++..+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~-~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP-QEVLELYPAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 9999999999999999988542 22 1 22234466677776421 1112222355666777778899999999999
Q ss_pred HHHHhhcCChHhHHHH-HHC-CCHHHH----HHhhhcCChHHHHHHHHHHHHhHh
Q 004073 661 CLFLLCNGNEKCCQMV-LQE-GVIPAL----VSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 661 ~L~~Lc~~~~~~~~~v-~~~-G~i~~L----v~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+|..||+.. +....+ ... +.+... -....+++.+.|..+...|..+-.
T Consensus 313 tlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 313 TLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999999766 455555 443 344444 455667888999999988887753
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.12 E-value=1.3e-09 Score=100.15 Aligned_cols=117 Identities=22% Similarity=0.233 Sum_probs=108.4
Q ss_pred HHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 591 NLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 591 ~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
.+++.|+++.|+++|.+++..++..++.+|.+++.. ++.+..+... |+++.|+++|.+.++.++..|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 468899999999999998899999999999999998 6777787774 99999999999999999999999999999988
Q ss_pred hHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 670 EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 670 ~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
+.....+.+.|+++.|+.++..++.++++.|..+|.+|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 778888899999999999999999999999999999875
No 25
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.05 E-value=7.3e-09 Score=111.43 Aligned_cols=279 Identities=12% Similarity=0.081 Sum_probs=211.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCC---HHHHHHHHHHHHHhhccC
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERN---SYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d---~~~qe~A~~aL~nLs~~~ 504 (775)
++.|.+...+. +.++-.+..++|.+.+-++.++|..+.+.|+-..++++|+..+..++ ......+...|.|....+
T Consensus 89 le~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~ 167 (604)
T KOG4500|consen 89 LELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDS 167 (604)
T ss_pred HHHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCc
Confidence 33444444555 78899999999999999999999999999998888898876543333 344566678899998777
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh----HHHHHHHHhccccc-CC-ccccccccCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFL-DD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~----~~~AaaaL~~Ls~~-~~-~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
+..+.++++.|+++.|..++.=+-. .+...+..+||... .+ .+.....+.....|+++|....+++..+.....
T Consensus 168 ~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fei 247 (604)
T KOG4500|consen 168 RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEI 247 (604)
T ss_pred HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHH
Confidence 7789999999999999998854321 35556666665442 22 244445567778888998876678889999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccC-CChHHHHH-------HHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEK-------SLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG 650 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~-------al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~ 650 (775)
|...+.++..+..+++.|.+..+++++.. .+..-++. +......|...++.-..+...+..+..++..+.+.
T Consensus 248 la~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~ 327 (604)
T KOG4500|consen 248 LAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSD 327 (604)
T ss_pred HHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCC
Confidence 99999999999999999999999998865 22222233 33334444445555555655544788889999988
Q ss_pred CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh-----cCChHHHHHHHHHHHHhH
Q 004073 651 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-----NGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 651 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-----~g~~~~k~kA~~LL~~L~ 708 (775)
+...+-.++-++.|+++.+ .++..+++.|.+..|+.++. .|+.+.+..+...||+|.
T Consensus 328 d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 328 DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 8888888888999999988 67888889999999997653 367788888889999886
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.02 E-value=1.8e-10 Score=86.39 Aligned_cols=39 Identities=36% Similarity=0.869 Sum_probs=31.1
Q ss_pred cccccccccCceecCCCCccchHHHHHHHhcCC---CCCCCC
Q 004073 285 CPISLQLMYDPVIIASGQTYERICIEKWLSDGH---STCPKT 323 (775)
Q Consensus 285 CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~---~~CP~t 323 (775)
||||+++|+|||+++|||+||+.||++|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997532 469986
No 27
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.98 E-value=3.4e-10 Score=111.48 Aligned_cols=61 Identities=26% Similarity=0.541 Sum_probs=53.4
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc---------------CCCCCCCCCCCCCCCCCcccHH
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD---------------GHSTCPKTQQKLPHLCLTPNYC 337 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~---------------~~~~CP~t~~~l~~~~l~pn~~ 337 (775)
....++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 345678999999999999999999999999999999842 2357999999999999999864
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=5e-09 Score=113.74 Aligned_cols=197 Identities=21% Similarity=0.243 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcC
Q 004073 488 YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG 565 (775)
Q Consensus 488 ~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~ 565 (775)
.....|+..|+|++. +-..-..|...+.+..|++.|+..+. .......|..||..++||..+++.|.|..|++|+..
T Consensus 278 qLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 444668889999985 44456667888999999999987764 344666677899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHH
Q 004073 566 KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 566 ~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~ 645 (775)
. +++.++..+..|+|||.+.+++.+||..|.+|.|+.+|.+.... .-|+.+|..++.....+.-+.-+ .||+.+++
T Consensus 357 ~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayT-dci~~lmk 432 (791)
T KOG1222|consen 357 Q-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYT-DCIKLLMK 432 (791)
T ss_pred C-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHH-HHHHHHHH
Confidence 8 99999999999999999999999999999999999999876554 56888999998887777777665 89999999
Q ss_pred HhcCCCHHHHHHH-HHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh
Q 004073 646 VLDTGELIEQEQA-VSCLFLLCNGNEKCCQMVLQEGVIPALVSISV 690 (775)
Q Consensus 646 lL~~~s~~~~e~A-v~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~ 690 (775)
.+-.++...-..+ ++.-.|||-+. .+.+.+.+..++..|+...-
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~ 477 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAI 477 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHh
Confidence 8876544333333 33447788654 56777877778888876543
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.91 E-value=2.6e-07 Score=107.07 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=207.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+.+..++..|... +.++...|+..|..+++... ....+...+.+..|..++.. .+..++..+..++.+++..++
T Consensus 119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCH
Confidence 4455666677777 89999999999999998754 44567788889999999976 577888889999999987677
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCC-CCH----HHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-TEH----QCKLDALHA 578 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~-~~~----~~k~~Al~a 578 (775)
+....+.+.|.++.++.-|++.+. +.+|+.+|..|+..+++...+.+.|+++.|+.++.+. .++ -..-..+..
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 777778889999999999999664 5789999999999988988998899999999999754 122 122233355
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHH-hhCCCcHHHHHH----HhcCCCHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM-NSTPGLVSGLAT----VLDTGELI 653 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i-~~~~g~I~~Lv~----lL~~~s~~ 653 (775)
..+++........-.--..+..|.+++.+.+...+..|+.+|+.+++..+|+..+ ....+.+...++ ...++..+
T Consensus 273 ~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 273 FGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 6666665333222112335556666777888888999999999999999999999 544444444444 44567889
Q ss_pred HHHHHHHHHHHhhcCCh----Hh----HHHH---HHCCCHH-HHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 654 EQEQAVSCLFLLCNGNE----KC----CQMV---LQEGVIP-ALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 654 ~~e~Av~~L~~Lc~~~~----~~----~~~v---~~~G~i~-~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.|..++.+|.++-.... +. .... ...+-.. .++.++..+=+++|-.|..+|+.+..+.
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 99999999999843211 11 1111 1123344 5668888888999999999999887664
No 30
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=1.5e-09 Score=119.29 Aligned_cols=71 Identities=24% Similarity=0.480 Sum_probs=64.1
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
.+...|.||||+++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|+.|.++|+.|....
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 45578999999999999999999999999999999975 458999999998889999999999999996643
No 31
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.4e-09 Score=109.48 Aligned_cols=76 Identities=36% Similarity=0.424 Sum_probs=71.9
Q ss_pred CCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV 351 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i 351 (775)
..++|+.++|.|++++|+|||+.|+|.||+|..|+.+++.-....|+|+.+|+...++||++|+..|..|...|+.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 3478999999999999999999999999999999999998778999999999999999999999999999999874
No 32
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.78 E-value=1.3e-07 Score=102.02 Aligned_cols=280 Identities=15% Similarity=0.072 Sum_probs=203.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccC----CCHHHHHHHHHHHHHhhccC
Q 004073 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCE----RNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 429 ~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~----~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+++.|.+. -.+...+.+-+|-.-+.+++..+-.++++|.++-++.++..-... ++...-..++....-+..+
T Consensus 226 ~~l~~ll~~~-v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG- 303 (604)
T KOG4500|consen 226 FMLLQLLPSM-VREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG- 303 (604)
T ss_pred HHHHHHHHHh-hccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC-
Confidence 3444445443 222233333444444456778888999999999999999752111 1112223333333333333
Q ss_pred CchhHHHHhhC-cHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcC-----CCCHHHHHHHH
Q 004073 505 NRNKELMLAAG-VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG-----KTEHQCKLDAL 576 (775)
Q Consensus 505 ~~nk~~i~~~G-~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~-----~~~~~~k~~Al 576 (775)
++.-..+...+ ++..++..+.+.+.. ..++-++.|++..|++...+.+.|.+..|+.+|.. | +.+.+.+++
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdg-nV~~qhA~l 382 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDG-NVERQHACL 382 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhHHHHH
Confidence 33433344444 888999999887764 45666678999999999999999999999999963 4 889999999
Q ss_pred HHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHH-H
Q 004073 577 HALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELI-E 654 (775)
Q Consensus 577 ~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~-~ 654 (775)
.||.||...-.||..++.+|+++.++..+....+.++-+-+++|.-+....+ ...++..+...+..||+.-++.+-. +
T Consensus 383 sALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv 462 (604)
T KOG4500|consen 383 SALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGV 462 (604)
T ss_pred HHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchh
Confidence 9999999999999999999999999999988888888999999998877666 4456666766777777777665433 6
Q ss_pred HHHHHHHHHHhhcCC--hHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 655 QEQAVSCLFLLCNGN--EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 655 ~e~Av~~L~~Lc~~~--~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.-...+.|..+-+++ .+....+-+.|+|..++.+....+-..+..|.-.|..+....
T Consensus 463 ~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 463 AGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred hhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 667778888887763 355677788899999999988888888888887776665443
No 33
>PRK09687 putative lyase; Provisional
Probab=98.77 E-value=5.1e-07 Score=96.69 Aligned_cols=218 Identities=12% Similarity=0.022 Sum_probs=139.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...+.+. +..+|..|+..|..+-..... ..-+++.|..++.. +.++.++..|+.+|.++... ....
T Consensus 58 ~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~-~~~~- 125 (280)
T PRK09687 58 LAIELCSSK-NPIERDIGADILSQLGMAKRC------QDNVFNILNNLALE---DKSACVRASAINATGHRCKK-NPLY- 125 (280)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhc---CCCHHHHHHHHHHHhccccc-cccc-
Confidence 333344444 677777777777766432110 12345666665332 16777777888888777421 1111
Q ss_pred HHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
...+++.+...+...+. +..|+.+|.. ++...+++.|+.+|++. +..++..|+.+|..+....
T Consensus 126 ---~~~a~~~l~~~~~D~~~~VR~~a~~aLg~----------~~~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~- 190 (280)
T PRK09687 126 ---SPKIVEQSQITAFDKSTNVRFAVAFALSV----------INDEAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDN- 190 (280)
T ss_pred ---chHHHHHHHHHhhCCCHHHHHHHHHHHhc----------cCCHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCC-
Confidence 12244555555555443 3445555532 23345788888888887 8888888888888873211
Q ss_pred ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 588 NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
..+++.|+.+|.+.+..++..|+..|..+-. ..+|+.|++.|..+. .+..|+.+|..+-.
T Consensus 191 -------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 191 -------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred -------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 1466778888888888888888888876421 357888888887765 45566666666544
Q ss_pred CChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHH
Q 004073 668 GNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLM 705 (775)
Q Consensus 668 ~~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~ 705 (775)
. -++|.|..++. +.+.+++.+|.+.|.
T Consensus 251 ~-----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred H-----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 3 26899998886 889999999988775
No 34
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.75 E-value=3.5e-09 Score=84.77 Aligned_cols=44 Identities=36% Similarity=0.745 Sum_probs=31.9
Q ss_pred CccccccccccccCceec-CCCCccchHHHHHHHh-cCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLS-DGHSTCPKTQ 324 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~-~~~~~CP~t~ 324 (775)
-.|.||||+..|.|||.. .|||+|||.+|..|+. .+...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 479999999999999986 8999999999999995 4456799954
No 35
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.69 E-value=3.2e-07 Score=100.04 Aligned_cols=232 Identities=16% Similarity=0.129 Sum_probs=161.6
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh------hCcHHHHHHHhccCCh--HHHHHHHHhcc
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA------AGVIPLLEKMISNSNS--HGAATALYLNL 540 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~------~G~i~~Lv~lL~s~~~--~~~AaaaL~~L 540 (775)
+....++.+|... ..+.++....+..+..+...++.....+.. ...+.++++++.+++. ...|+.+|..|
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4466777788763 257788888888888886544444444444 1267888888888875 45677777777
Q ss_pred cccCCccccccccCchHHHHHhhcCCC---CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc------c-CCCh
Q 004073 541 SFLDDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA------V-PGDP 610 (775)
Q Consensus 541 s~~~~~k~~I~~~g~i~~LV~LL~~~~---~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL------~-~~~~ 610 (775)
......+..-...+.++.++..|.+.. +.+....|+.+|.+|...++.|..+.+.|+++.|+.++ . ..+.
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 666554444333577888888887531 34566899999999999999999999999999999988 2 2356
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChH-hHHHHHHCCCHHHHHHh
Q 004073 611 MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEK-CCQMVLQEGVIPALVSI 688 (775)
Q Consensus 611 ~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~-~~~~v~~~G~i~~Lv~L 688 (775)
.++-+++-+++.|+-+++....+... +.|+.|+++++. ...++..-++++|.|++..+.. ....|+..|+.+.|-.|
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 78889999999999999999999886 699999999984 5788999999999999986643 78888888887777766
Q ss_pred hhc--CChHHHHHHHHH
Q 004073 689 SVN--GSTRGRDKAQRL 703 (775)
Q Consensus 689 l~~--g~~~~k~kA~~L 703 (775)
... .+++..+--..+
T Consensus 292 ~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HSS--SSHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHH
Confidence 654 466666554444
No 36
>PRK09687 putative lyase; Provisional
Probab=98.68 E-value=1.7e-06 Score=92.66 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=161.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.+. +..++..|+..|..+- ...+++.+..++.+ .|+.++..|+++|..|.. ..
T Consensus 24 ~~~~L~~~L~d~-d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~--~~ 85 (280)
T PRK09687 24 NDDELFRLLDDH-NSLKRISSIRVLQLRG-----------GQDVFRLAIELCSS----KNPIERDIGADILSQLGM--AK 85 (280)
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC--Cc
Confidence 455677778777 8999999999987653 24567788888877 799999999999999842 21
Q ss_pred hhHHHHhhCcHHHHHHHh-ccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMI-SNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL-~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.. ...+++.|..++ +..+. +..|+.+|.++..... .....++..|..++.+. +..++..|+.+|..+.
T Consensus 86 ~~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 86 RC----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK-STNVRFAVAFALSVIN 156 (280)
T ss_pred cc----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC-CHHHHHHHHHHHhccC
Confidence 11 234778888874 44443 5678888887743221 11234567788888888 9999999999997653
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
...+++.|+.+|.+.+..++..|+.+|..+... ++..++.|+.+|.+.++.++..|+..|.
T Consensus 157 ----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 157 ----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 123889999999999999999999999988321 2356788999999999999999999987
Q ss_pred HhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 664 LLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 664 ~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.+-.. -+++.|+..+.++. ++..|...|-.+
T Consensus 218 ~~~~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 218 LRKDK-----------RVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred ccCCh-----------hHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 75332 26777777776655 334444444433
No 37
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.64 E-value=1.7e-08 Score=74.62 Aligned_cols=38 Identities=39% Similarity=0.929 Sum_probs=33.5
Q ss_pred cccccccccCc-eecCCCCccchHHHHHHHhcCCCCCCCC
Q 004073 285 CPISLQLMYDP-VIIASGQTYERICIEKWLSDGHSTCPKT 323 (775)
Q Consensus 285 CPIs~~~m~dP-V~~~~G~ty~r~~I~~w~~~~~~~CP~t 323 (775)
|||+++.+.|| |+++|||+|++.||++|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 7899986
No 38
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.3e-06 Score=100.94 Aligned_cols=257 Identities=15% Similarity=0.113 Sum_probs=196.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLK-DDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak-~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..|+..|....++..|.+|+.+|+.... .+++.-.-+--.-+||.|+.+|+.. .+.+++..|+.+|.+|.---
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhc
Confidence 4677899988765478899999999987664 4444333333357899999999874 68999999999999997656
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
++....+++.++||.|+.-|..=.. -|.++.+|..++..+ . ..|.+.|++-..+..|+== +..+++.|+.+-.|
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~-~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN 320 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-P-KAILQAGALSAVLSYLDFF-SIHAQRVALAIAAN 320 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-c-HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7788888999999999998765332 477999999888653 3 3455589999888888755 67799999999999
Q ss_pred hcCC--CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC----cccHHHHhhCCCcHHHHHHHhcCC----C
Q 004073 582 LSTI--PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS----AAGKEEMNSTPGLVSGLATVLDTG----E 651 (775)
Q Consensus 582 Ls~~--~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~----~e~~~~i~~~~g~I~~Lv~lL~~~----s 651 (775)
+|.. ++.=..++ .++|.|..+|...+....+.++-.+..++.. ++--+++..+ |.|.....+|... +
T Consensus 321 ~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 321 CCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQLLSVTPTILS 397 (1051)
T ss_pred HHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHHHhcCccccc
Confidence 9943 33333333 3799999999888888888888888888763 3344566665 9999999998743 3
Q ss_pred HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc
Q 004073 652 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN 691 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~ 691 (775)
....--.++.|..+|++++-.....+..++...|-.++..
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 3455666788888999988888888888888888766653
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.59 E-value=4.7e-06 Score=93.26 Aligned_cols=277 Identities=16% Similarity=0.109 Sum_probs=189.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-----cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-----NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-----~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
+..|+..|......++....+.-+..+..+++..-..+.+ .....+++++|.. +|.-++..|+..|..+..
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~----~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR----QDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC----CchhHHHHHHHHHHHHHh
Confidence 3345555554446677778888888888776654444444 3567788888876 788899999999988864
Q ss_pred cCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCC-CHHHHHHHHHH
Q 004073 503 NNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT-EHQCKLDALHA 578 (775)
Q Consensus 503 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~-~~~~k~~Al~a 578 (775)
....+.......-.+..|...|.+++. ...|+..|..|...+++|..+...++++.|+.+|+... +.+..-.++-+
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 333221111111134455566665432 45577888888899999998888889999999998753 57899999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccC-CChHHHHHHHHHHHHHhCCcc-------cHHHHhhC--------------
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA-------GKEEMNST-------------- 636 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e-------~~~~i~~~-------------- 636 (775)
++-|+.+++....+...|.|+.|++++.. ....+..-++++|.||...+. ....++..
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99999988877777778999999999865 456778889999999988542 11122221
Q ss_pred -------------------------------------------------------------CCcHHHHHHHhc-CCCHHH
Q 004073 637 -------------------------------------------------------------PGLVSGLATVLD-TGELIE 654 (775)
Q Consensus 637 -------------------------------------------------------------~g~I~~Lv~lL~-~~s~~~ 654 (775)
-..+..|+++|. +.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 012334444442 223333
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 655 QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 655 ~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..-|+.=+..+++.-|..+..+-+-|+=..++.|+.+.++++|..|...++.|-
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333333344444444556667777888788889999999999999998887663
No 40
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.55 E-value=9.1e-07 Score=96.46 Aligned_cols=223 Identities=22% Similarity=0.176 Sum_probs=162.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc------cCchHHHHHHhchhccCCCHHHHHHHHHHHHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA------NGFVVALLRFLESAVCERNSYAQEIGAMALFN 499 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~------~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~n 499 (775)
..+..++..+ +. +.+....++.-|..+..+++.....+.. .....++++++.+ +|..++..|+..|..
T Consensus 58 ~~~l~lL~~~-~~-~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~----~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 58 SLFLNLLNKL-SS-NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR----NDSFIQLKAAFILTS 131 (312)
T ss_dssp ----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-----SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-cC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC----CCHHHHHHHHHHHHH
Confidence 4555777776 33 7788889999999999888766555554 1257888888877 799999999999999
Q ss_pred hhccCCchhHHHHhhCcHHHHHHHhccCCh------HHHHHHHHhcccccCCccccccccCchHHHHHhh------cCCC
Q 004073 500 LAVNNNRNKELMLAAGVIPLLEKMISNSNS------HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC------KGKT 567 (775)
Q Consensus 500 Ls~~~~~nk~~i~~~G~i~~Lv~lL~s~~~------~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL------~~~~ 567 (775)
+....+ .+..-...++++.++.+|.+... ...|+.+|.+|...+++|..+.+.|+++.|+.+| .+..
T Consensus 132 Ll~~~~-~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 132 LLSQGP-KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HHTSTT-T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred HHHcCC-ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence 976433 33322236788888888876332 2558888899999999999999999999999999 3444
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccC-CChHHHHHHHHHHHHHhCCcc--cHHHHhhCCCcHHHHH
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA--GKEEMNSTPGLVSGLA 644 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e--~~~~i~~~~g~I~~Lv 644 (775)
+.+..-.++-++|-|+.+++....+...+.|+.|++++.. ....+..-++++|.||..... ....++.. | +..++
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~-~-~l~~l 288 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC-G-LLKTL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH---HHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc-c-HHHHH
Confidence 6889999999999999999999999999999999998865 467888999999999999776 66677764 4 45555
Q ss_pred HHhcC---CCHHHHHH
Q 004073 645 TVLDT---GELIEQEQ 657 (775)
Q Consensus 645 ~lL~~---~s~~~~e~ 657 (775)
..|.. ++++..+.
T Consensus 289 ~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 289 QNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHSS--SSHHHHHH
T ss_pred HHHhcCCCCCHHHHHH
Confidence 55543 46666654
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.48 E-value=1.7e-05 Score=98.27 Aligned_cols=225 Identities=19% Similarity=0.182 Sum_probs=126.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.+. +..+|..|+..|..+. ..++++.|+..|.+ .+..++..|+.+|..+.....
T Consensus 622 ~~~~L~~~L~D~-d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~- 684 (897)
T PRK13800 622 SVAELAPYLADP-DPGVRRTAVAVLTETT-----------PPGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLP- 684 (897)
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccC-
Confidence 455777788777 8999999998887653 34577888888876 788888888888876631100
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-----------C--cc----ccccccCchHHHHHhhcCCC
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-----------D--AK----PIIGSSHAVPFLVELCKGKT 567 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-----------~--~k----~~I~~~g~i~~LV~LL~~~~ 567 (775)
..+.|...|.+.+. +..|+.+|..+...+ + .+ ..++..+..+.|..++.+.
T Consensus 685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~- 754 (897)
T PRK13800 685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDE- 754 (897)
T ss_pred ---------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-
Confidence 11334444444333 222333332221000 0 00 0000011223444555555
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 647 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL 647 (775)
++.++..++.+|..+... ..+.++.|+.++.+.++.++..|+.+|.++... ...+..|+..|
T Consensus 755 ~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL 816 (897)
T PRK13800 755 NREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP----------PDDVAAATAAL 816 (897)
T ss_pred CHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chhHHHHHHHh
Confidence 555555555555555321 122356667777777777777777777665321 11234455566
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 648 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 648 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.+.++.++..|+.+|..+.... +++.|+.++.+.+..+|..|...|..+
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~~~-----------a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAADV-----------AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCChHHHHHHHHHHHhccccc-----------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 6666666666666665553221 457777777777777777777777654
No 42
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.48 E-value=6e-08 Score=72.89 Aligned_cols=36 Identities=25% Similarity=0.752 Sum_probs=23.3
Q ss_pred cccccccccC----ceecCCCCccchHHHHHHHhcC---CCCCC
Q 004073 285 CPISLQLMYD----PVIIASGQTYERICIEKWLSDG---HSTCP 321 (775)
Q Consensus 285 CPIs~~~m~d----PV~~~~G~ty~r~~I~~w~~~~---~~~CP 321 (775)
||||.+ |.+ |++++||||||+.||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 34577
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=3e-05 Score=89.52 Aligned_cols=270 Identities=15% Similarity=0.163 Sum_probs=193.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
++++.|+.++.+.-=.+.|+.|+..|+.+++ ..|..++.. ++++|++.|..+. .|+++...++.+++++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~--~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDY--MDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhcc--CCHHHHHHHHHHHHHHHhcCc
Confidence 7899999999877456899999999999996 467666654 5899999998743 689999999999999976543
Q ss_pred ------chh----------HHHH-hhCcHHHHHHHhccCCh--HHHHHHHHhccccc--CCccccccc-cCchHHHHHhh
Q 004073 506 ------RNK----------ELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGS-SHAVPFLVELC 563 (775)
Q Consensus 506 ------~nk----------~~i~-~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~--~~~k~~I~~-~g~i~~LV~LL 563 (775)
+.+ ..++ ..+.|..|+..+...+- +-.|...+.++-.. .+.+..+.. +-+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 222 1222 36788888888876553 45577777654432 355666655 68999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCChHHHHH-cCcHHHHHHhccC-C---ChHHHHHHHHHHHHHhCCcccHHHHhhCCC
Q 004073 564 KGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVP-G---DPMWTEKSLAVLLNLAASAAGKEEMNSTPG 638 (775)
Q Consensus 564 ~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~-~---~~~i~e~al~~L~nLa~~~e~~~~i~~~~g 638 (775)
.+. ...++-+|+-.|..|+.+..+..++|. .++...|..++.. | ..-+.+.|+..|-||-.....-..+....+
T Consensus 176 ~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 176 RDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred hhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 987 778999999999999988888888877 8899999999854 2 235789999999999886665555555569
Q ss_pred cHHHHHHHhcC---CCH-------H---HHHHHHHHHHHhhcCC------hHhHHHHHHCCCHHHHHHhhhcC--ChHHH
Q 004073 639 LVSGLATVLDT---GEL-------I---EQEQAVSCLFLLCNGN------EKCCQMVLQEGVIPALVSISVNG--STRGR 697 (775)
Q Consensus 639 ~I~~Lv~lL~~---~s~-------~---~~e~Av~~L~~Lc~~~------~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k 697 (775)
.||.|.++|.. ++. . .--.|+.++..+...+ ..+..++.+.+++..|..++.+. ...++
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 99999998862 331 1 1123344444444321 12345677788999998666554 23444
Q ss_pred HHHHH
Q 004073 698 DKAQR 702 (775)
Q Consensus 698 ~kA~~ 702 (775)
..+.-
T Consensus 335 tesii 339 (970)
T KOG0946|consen 335 TESII 339 (970)
T ss_pred HHHHH
Confidence 44443
No 44
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.41 E-value=1.1e-07 Score=99.00 Aligned_cols=68 Identities=25% Similarity=0.436 Sum_probs=62.6
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
-.-++|-||.+.|+-||++|||||||--||.+++.. ++.||.|..+.....|+-|+.|..+|+.+-..
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 356899999999999999999999999999999986 88999999999999999999999999988543
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.41 E-value=9.8e-08 Score=76.65 Aligned_cols=58 Identities=21% Similarity=0.442 Sum_probs=34.1
Q ss_pred ccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 282 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
-++|++|.++|++||.+ .|.|+||+.||...+.. .||+|+.|....+++-|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 47999999999999975 89999999999887654 499999999999999999998886
No 46
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.37 E-value=2.5e-07 Score=69.08 Aligned_cols=39 Identities=41% Similarity=1.010 Sum_probs=36.4
Q ss_pred cccccccccCce-ecCCCCccchHHHHHHHh-cCCCCCCCC
Q 004073 285 CPISLQLMYDPV-IIASGQTYERICIEKWLS-DGHSTCPKT 323 (775)
Q Consensus 285 CPIs~~~m~dPV-~~~~G~ty~r~~I~~w~~-~~~~~CP~t 323 (775)
|||+++.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 667789986
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.31 E-value=7.5e-05 Score=92.71 Aligned_cols=227 Identities=17% Similarity=0.081 Sum_probs=146.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC-
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN- 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~- 504 (775)
+.+..|+..|... +..++..|+..|..+.... ...+.|...|.+ .|+.++..|+.+|..+....
T Consensus 652 ~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~----~d~~VR~~A~~aL~~~~~~~~ 716 (897)
T PRK13800 652 GFGPALVAALGDG-AAAVRRAAAEGLRELVEVL----------PPAPALRDHLGS----PDPVVRAAALDVLRALRAGDA 716 (897)
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcC----CCHHHHHHHHHHHHhhccCCH
Confidence 3456667777666 8999999999887774321 112345555554 45566666655555442100
Q ss_pred ---------Cc--hhHHHH----hhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCC
Q 004073 505 ---------NR--NKELML----AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT 567 (775)
Q Consensus 505 ---------~~--nk~~i~----~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~ 567 (775)
++ .|...+ .-+..+.|..+|...+. +..++.+|..+... ..+.++.|..++++.
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~- 787 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDP- 787 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCC-
Confidence 00 000000 00112334444444433 23344444433221 123478999999998
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 647 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL 647 (775)
++.++..|+.+|.++.... .+++.|+..|.+.+..++..|+.+|..+.. ...++.|+.+|
T Consensus 788 d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L 847 (897)
T PRK13800 788 DPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEAL 847 (897)
T ss_pred CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHh
Confidence 9999999999999884321 123567888888889999999999987642 35679999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004073 648 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 648 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
.+.++.+|..|+.+|..+- .++. +.+.|...+.+.+..+|..|...|..
T Consensus 848 ~D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred cCCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999998862 2221 46777788899999999999998863
No 48
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.29 E-value=4.4e-07 Score=70.95 Aligned_cols=47 Identities=28% Similarity=0.602 Sum_probs=41.3
Q ss_pred CccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+++.|+||++-+.++++++|||. ||..|+.+|+. ....||+|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 47899999999999999999999 99999999998 5789999998864
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4e-05 Score=82.39 Aligned_cols=184 Identities=20% Similarity=0.243 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPL 519 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~ 519 (775)
+.+.+..|+..|..++.+ -+|-..+...|++.+|+.+|.+ .+..+++.|+++|...+.+++.....+++.|+++.
T Consensus 96 ~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~----~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLEN----SDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred CHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcC----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 789999999999999965 7788889999999999999988 89999999999999998776666666666665555
Q ss_pred HHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcH
Q 004073 520 LEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGII 598 (775)
Q Consensus 520 Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V 598 (775)
|+..| .+..+..++..|+.|+++|-.+. ....++...++.
T Consensus 171 Ll~~l---------------------------------------s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 171 LLKIL---------------------------------------SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HHHHH---------------------------------------ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 55544 43325567778888888887654 466777788899
Q ss_pred HHHHHhccC--CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 599 SGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 599 ~~Lv~LL~~--~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
..|...|.+ .+..++.+++..|..|.........+....+....++.+....+....|.|+.+++.+..
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 999999987 578888999999999987554444455555777788888888899999999999888765
No 50
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.28 E-value=5.8e-07 Score=92.64 Aligned_cols=48 Identities=21% Similarity=0.619 Sum_probs=41.3
Q ss_pred CCccccccccccccCc--------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDP--------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP--------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.++..||||++.+.+| |+.+|||+||+.||.+|+.. +.+||.||+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4578999999988774 56689999999999999975 779999998764
No 51
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.9e-07 Score=91.61 Aligned_cols=58 Identities=26% Similarity=0.551 Sum_probs=52.4
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHh--cCCCCCCCCCCCCCCCCCcccHH
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLS--DGHSTCPKTQQKLPHLCLTPNYC 337 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~--~~~~~CP~t~~~l~~~~l~pn~~ 337 (775)
-..|-|-||++.-+|||+..|||-||=-||-+|++ .+...||+|+...+...++|-|.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 36899999999999999999999999999999997 34567999999999999999764
No 52
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.8e-07 Score=96.53 Aligned_cols=71 Identities=28% Similarity=0.613 Sum_probs=61.8
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV 351 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i 351 (775)
...+++.||||++.|.+|++++|||+||+.||..|+. +...||.|+. ....+.||..+..++......+..
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~--~~~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP--PSRNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC--chhccCccHHHHHHHHHHHhcCCc
Confidence 3457999999999999999999999999999999998 6778999996 233788999999999998877653
No 53
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=8.4e-07 Score=85.40 Aligned_cols=53 Identities=25% Similarity=0.559 Sum_probs=45.2
Q ss_pred CccccccccccccCce--ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004073 281 EELRCPISLQLMYDPV--IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV--~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p 334 (775)
.-|.||||++-+..=| ...|||.||+.||+..+.. ...||.|+.++++..+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 5599999999988755 4689999999999999986 558999999998877654
No 54
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.2e-06 Score=104.29 Aligned_cols=73 Identities=30% Similarity=0.435 Sum_probs=67.6
Q ss_pred CCCCCCccccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
..++|++|..||+..+|+|||++| +|+|.||+.|++++.. ..+.|.||++|+..+++||..||.-|+.|...+
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 356999999999999999999998 8999999999999875 568899999999999999999999999997654
No 55
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.7e-05 Score=92.05 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=126.9
Q ss_pred cccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc-CCCCChHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhCC
Q 004073 549 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS-TIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 549 ~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs-~~~~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~ 626 (775)
.+-..-++|.||.||++..+.++...|++||.+|+ ..+.....+|+.|+||.|++ |+.-.-..+.|+++.+|..|+..
T Consensus 206 ~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~ 285 (1051)
T KOG0168|consen 206 GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR 285 (1051)
T ss_pred cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 34446789999999999989999999999999999 58889999999999999999 55555566779999999999863
Q ss_pred cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHH
Q 004073 627 AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 627 ~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~ 705 (775)
.-.+++.+ |++...+..|.--+..+|..|+++..|+|.. .++.-..+++ ++|.|-.|+...+...-+.+.-.+.
T Consensus 286 --H~~AiL~A-G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ 360 (1051)
T KOG0168|consen 286 --HPKAILQA-GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLT 360 (1051)
T ss_pred --ccHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHH
Confidence 33567774 9999999999988999999999999999964 2233333333 5888999999888888887776665
Q ss_pred HhHhc
Q 004073 706 LFREQ 710 (775)
Q Consensus 706 ~L~~~ 710 (775)
.+.+.
T Consensus 361 ri~d~ 365 (1051)
T KOG0168|consen 361 RIADG 365 (1051)
T ss_pred HHHHh
Confidence 55443
No 56
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.15 E-value=1.2e-05 Score=74.52 Aligned_cols=156 Identities=18% Similarity=0.119 Sum_probs=130.8
Q ss_pred ccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc
Q 004073 550 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG 629 (775)
Q Consensus 550 I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~ 629 (775)
|...+-+..||.=..+.++.++++....-|.|.+-++-|-..+.+..++...+.-|...+..+++-+++.|.|||-.+.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 44456788888888777799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004073 630 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
...|... ++++.++..+.+....+-..|+..|..||-+....+..++...++........+.+.+-+.-|...|.-
T Consensus 92 ~~~I~ea-~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 92 AKFIREA-LGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHHHHh-cCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999885 889999999988888888999999999998776677777776666666655555555555555555543
No 57
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.13 E-value=2.3e-06 Score=64.40 Aligned_cols=44 Identities=39% Similarity=0.973 Sum_probs=39.4
Q ss_pred ccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 284 RCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 284 ~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
.||||++.+.+|+.+. |||+|+..|+..|+..++..||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999886 9999999999999988788899998753
No 58
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=6.5e-05 Score=80.83 Aligned_cols=147 Identities=20% Similarity=0.166 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHH
Q 004073 566 KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 566 ~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv 644 (775)
..+.+-++.|+.-|..++.+-+|...++..|+..+|+.++.+.+..+++.|+++|...+.+ +..+..+++. |+...|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL-GALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccHHHHH
Confidence 3478899999999999999999999999999999999999999999999999999999885 5667777875 8999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc--CChHHHHHHHHHHHHhHhccCC
Q 004073 645 TVLDTG-ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN--GSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 645 ~lL~~~-s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~--g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
.++.+. +..++.+|+.++.++-++.+.....+...++...|...+.+ .+.+.|+||..|+..|-.....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 999864 55677999999999999887788888888889999998888 5788899999999888754433
No 59
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.09 E-value=1.9e-06 Score=88.24 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=60.5
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
.-++|-||.+.++-|++.+||||||--||.+++.. ++.||+|+.+....-++-+..++..++.+...
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 45799999999999999999999999999999986 88999999998888899898888888887553
No 60
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.07 E-value=1.4e-06 Score=66.25 Aligned_cols=40 Identities=33% Similarity=0.855 Sum_probs=33.9
Q ss_pred cccccccccc---CceecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004073 284 RCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQ 324 (775)
Q Consensus 284 ~CPIs~~~m~---dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~ 324 (775)
.||||++-|. .++.++|||+|.+.||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 5667799999999999999987 56999985
No 61
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.01 E-value=0.00017 Score=84.04 Aligned_cols=250 Identities=15% Similarity=0.160 Sum_probs=166.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...|.+. ++.+|.+|+..+..+.+.+++. +... .++.|.++|.+ .|+.++..|+.++..+ ..+++.-.
T Consensus 118 ~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i-~~~~~~~~ 187 (526)
T PF01602_consen 118 DVIKLLSDP-SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSD----KDPSVVSAALSLLSEI-KCNDDSYK 187 (526)
T ss_dssp HHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTH----SSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred HHHHHhcCC-chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccC----CcchhHHHHHHHHHHH-ccCcchhh
Confidence 344456666 8999999999999999876642 2223 68999999977 7899999999999998 21221111
Q ss_pred HHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
-.-...+..|..++...++ +...+.++..++........- ...++.+..++++. ++.+.-.|+.++..+.....
T Consensus 188 -~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 188 -SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp -THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH
T ss_pred -hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH
Confidence 1122334444444445554 345666666555433211100 45678888888877 88889999999998866544
Q ss_pred ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhh
Q 004073 588 NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc 666 (775)
.-..++++|+.+|.+.+..++-.++..|..++... ...+. + ....+..+. +.++.++..++.+|..++
T Consensus 264 -----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~-~---~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF-N---QSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp -----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG-T---HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred -----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh-h---hhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 44558888999998888888899999999998765 23332 2 233344555 778889999999999998
Q ss_pred cCChHhHHHHHHCCCHHHHHHhh-hcCChHHHHHHHHHHHHhHhcc
Q 004073 667 NGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 667 ~~~~~~~~~v~~~G~i~~Lv~Ll-~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
... +... +++.|...+ ..+++..++.+...+..+....
T Consensus 333 ~~~--n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 333 NES--NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp -HH--HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred ccc--chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 743 3333 466676666 4457778888777776665443
No 62
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=5e-06 Score=86.07 Aligned_cols=54 Identities=22% Similarity=0.545 Sum_probs=47.6
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT 333 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~ 333 (775)
.+..+.|-||++-++||--+||||.||=+||..|..+ ..-||.||+++++..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3467999999999999999999999999999999987 44599999998876653
No 63
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.98 E-value=5.7e-06 Score=59.98 Aligned_cols=39 Identities=49% Similarity=1.107 Sum_probs=36.3
Q ss_pred cccccccccCceecCCCCccchHHHHHHHhcCCCCCCCC
Q 004073 285 CPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKT 323 (775)
Q Consensus 285 CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t 323 (775)
|||+++...+|++++|||.|+..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789986
No 64
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.94 E-value=0.00021 Score=83.28 Aligned_cols=251 Identities=17% Similarity=0.221 Sum_probs=174.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+-.+...|.+. ++.+|.-|++.|..+.. ++... -.++.+.++|.+ .++.++..|+.++..+...++
T Consensus 81 ~n~l~kdl~~~-n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~----~~~~VRk~A~~~l~~i~~~~p-- 146 (526)
T PF01602_consen 81 INSLQKDLNSP-NPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSD----PSPYVRKKAALALLKIYRKDP-- 146 (526)
T ss_dssp HHHHHHHHCSS-SHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHS----SSHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHhhcCC-CHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcC----CchHHHHHHHHHHHHHhccCH--
Confidence 44566678777 89999999999999872 33322 246778888887 789999999999999964322
Q ss_pred hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcc-cccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 508 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNL-SFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~L-s~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
..+... .++.|..+|...+. ...|+.++..+ ...+.+...+ ...+..|.+++... ++-.+..++..|..++.
T Consensus 147 -~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~--~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 -DLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI--PKLIRILCQLLSDP-DPWLQIKILRLLRRYAP 221 (526)
T ss_dssp -CCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH--HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTS
T ss_pred -HHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH--HHHHHHhhhccccc-chHHHHHHHHHHHhccc
Confidence 222233 79999999977765 35566666667 1111111111 34455566666666 88899999999988875
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 664 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~ 664 (775)
...... -....++.+..++.+.+..+.-.|+.++..+..... +.. .++..|+.+|.+.++.++-.++..|..
T Consensus 222 ~~~~~~--~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 222 MEPEDA--DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQ 293 (526)
T ss_dssp SSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred CChhhh--hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--hhHHHHHHHhhcccchhehhHHHHHHH
Confidence 443222 115678888888888888899999999998887655 332 578999999999999999999999999
Q ss_pred hhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 665 LCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 665 Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
++...+ ..+. .....+..+..+.+..+|.+|..+|..+...
T Consensus 294 l~~~~~----~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 294 LAQSNP----PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HCCHCH----HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred hhcccc----hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 998652 2222 2222233444478899999999988877654
No 65
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.00089 Score=81.03 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=107.3
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH--cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc--ccHH
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA--AGKE 631 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~--e~~~ 631 (775)
++.+-.+|.+. +..-+++|+.||..++.+- ...|.. ..+++..+..|.++++.++-.|+-++..++.+= +-..
T Consensus 350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 350 FEALEAMLQST-EWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 44455677788 9999999999999886432 222222 346666777889999999999999999998853 2222
Q ss_pred HHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHH-HHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 632 EMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIP-ALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~-~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.. ++-.++.|+..+.+ ++++++.+|+.+|.+.....+...-.=.=.+.+. .|..|..++++.+|+.|...|--...
T Consensus 427 ~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 427 KH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 22 34677788888875 6889999999999998865432211111124555 55578889999999999988866554
Q ss_pred ccC
Q 004073 710 QRQ 712 (775)
Q Consensus 710 ~~~ 712 (775)
..+
T Consensus 505 AA~ 507 (1075)
T KOG2171|consen 505 AAQ 507 (1075)
T ss_pred HHh
Confidence 443
No 66
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.86 E-value=0.0036 Score=70.47 Aligned_cols=238 Identities=12% Similarity=0.073 Sum_probs=162.8
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh-----hCcHHHHHHHhccCCh--HHHHHHHHhccc
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-----AGVIPLLEKMISNSNS--HGAATALYLNLS 541 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-----~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls 541 (775)
..+..++.+|+.. .+..+....+..+-.+...++.-...+.+ .+...+++.+|.+++. ...|+.+|..+.
T Consensus 53 ~y~~~~l~ll~~~---~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 53 QYVKTFVNLLSQI---DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 5677888888763 55667777777776665433222233333 2467778888887664 356777766554
Q ss_pred ccCCcc-ccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC--ChHHHHHHHH
Q 004073 542 FLDDAK-PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG--DPMWTEKSLA 618 (775)
Q Consensus 542 ~~~~~k-~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~--~~~i~e~al~ 618 (775)
.....+ ......-.+.-|...|+++.+...+.-|+.+|.+|...++.|..+.++++++.|+.+|... +..++-+++-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 432211 0000011233455566654357788889999999999999999999999999999999652 5678899999
Q ss_pred HHHHHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC------hHhHHHHHHCCCHHHHHHhhhc
Q 004073 619 VLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGN------EKCCQMVLQEGVIPALVSISVN 691 (775)
Q Consensus 619 ~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~------~~~~~~v~~~G~i~~Lv~Ll~~ 691 (775)
+++.|+-.+++...... .+.|+.|+++++. .-.++..-++++|.||...+ ......+++.|+.+.|-.|...
T Consensus 210 ~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r 288 (429)
T cd00256 210 CIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR 288 (429)
T ss_pred HHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence 99999998887666554 5999999999985 45678888999999998743 2345677777777666566554
Q ss_pred --CChHHHHHHHHHHHHhHhc
Q 004073 692 --GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 692 --g~~~~k~kA~~LL~~L~~~ 710 (775)
.+++..+--..+-..|.+.
T Consensus 289 k~~DedL~edl~~L~e~L~~~ 309 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNS 309 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 4677776666665555433
No 67
>PHA02926 zinc finger-like protein; Provisional
Probab=97.85 E-value=1e-05 Score=80.81 Aligned_cols=56 Identities=18% Similarity=0.462 Sum_probs=44.1
Q ss_pred CCCCccccccccccccC---------ceecCCCCccchHHHHHHHhcC-----CCCCCCCCCCCCCCCCccc
Q 004073 278 LPPEELRCPISLQLMYD---------PVIIASGQTYERICIEKWLSDG-----HSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~d---------PV~~~~G~ty~r~~I~~w~~~~-----~~~CP~t~~~l~~~~l~pn 335 (775)
...++..|+||++...+ +++.+|||+||..||.+|.... ..+||.||+.+. .++|+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 34678999999998754 4677999999999999999742 356999999864 44443
No 68
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.80 E-value=0.00021 Score=81.64 Aligned_cols=147 Identities=20% Similarity=0.108 Sum_probs=111.3
Q ss_pred HHHHHHHHhc--cccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCChHHHHHcCcHHHHHHhc
Q 004073 530 HGAATALYLN--LSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLA 605 (775)
Q Consensus 530 ~~~AaaaL~~--Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~nk~~iv~aG~V~~Lv~LL 605 (775)
...|+|.+.. ++.. +.-+.......++.+||.+|.++ +..++..+++||.||.. ...-|..+++.|+|..|..++
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh
Confidence 3445555543 3321 22233344567899999999988 99999999999999995 556799999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhCCcccHHHH--hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHH
Q 004073 606 VPGDPMWTEKSLAVLLNLAASAAGKEEM--NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ 678 (775)
Q Consensus 606 ~~~~~~i~e~al~~L~nLa~~~e~~~~i--~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~ 678 (775)
.+.+...+..++++|.++.-+.+..... ... =.-..|+.+..+.+..+||.+...|.|+..+..+....+++
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k-i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK-IPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHH-hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999999999999998765544332 221 23356778888999999999999999999876444444443
No 69
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.80 E-value=0.00066 Score=77.66 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHH
Q 004073 568 EHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~ 645 (775)
+.....+|+..+.+++..- .-+..+-+..++.+||+++.+++..+...++++|.||+..- .-+..++.. |+|..|.+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId~l~s 468 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN-NGIDILES 468 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHHHHHH
Confidence 6778888888888876321 11112445679999999999999999999999999998754 457777875 99999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC-CHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 646 VLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG-VIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 646 lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
++.+..+..+..++++|+++.-++.+..+...... ....|+.+..+.+..+++.+..+||+|.-.
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987755555544444 344567899999999999999999999754
No 70
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0045 Score=65.36 Aligned_cols=275 Identities=16% Similarity=0.178 Sum_probs=181.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhh-ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~-~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
....++..|.+. ++.+|..|+.-+-.++.. ..+.... +.-.++.|.+++.. .++ -+.|+++|.|++- +.
T Consensus 4 ~l~elv~ll~~~-sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~----~~~--~~~a~~alVnlsq-~~ 73 (353)
T KOG2973|consen 4 ELVELVELLHSL-SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD----LDP--AEPAATALVNLSQ-KE 73 (353)
T ss_pred HHHHHHHHhccC-ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC----ccc--ccHHHHHHHHHHh-hH
Confidence 445677778887 889999999988888876 2222222 24567888888876 333 5678999999975 56
Q ss_pred chhHHHHhhCcHHHHHHHhccCC-h-HHHHHHHHhcccccCCcccccc-------ccCchHHHHHhhcCCCCH-HHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSN-S-HGAATALYLNLSFLDDAKPIIG-------SSHAVPFLVELCKGKTEH-QCKLDA 575 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~-~-~~~AaaaL~~Ls~~~~~k~~I~-------~~g~i~~LV~LL~~~~~~-~~k~~A 575 (775)
.-+..+++. .+..+++++-+.. . ....+.+|.||+..++....+. ..|.+...+...+.+.+. .-....
T Consensus 74 ~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 74 ELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHH
Confidence 667777766 8888888887653 3 3557777789998765433221 145555555666655342 234456
Q ss_pred HHHHHHhcCCCCChHHHHHcCcHH--HHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCC-CcHHHH---------
Q 004073 576 LHALYNLSTIPSNIPNLLSAGIIS--GLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTP-GLVSGL--------- 643 (775)
Q Consensus 576 l~aL~nLs~~~~nk~~iv~aG~V~--~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~-g~I~~L--------- 643 (775)
+-.+.||+.....|..+.....++ .|+.+-..++.-=+.-.+++|.|.|-.......++... ..++.|
T Consensus 153 A~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 153 APVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccc
Confidence 677889999888888887755333 23333332222223457888999887766666555410 111111
Q ss_pred ------------HHHhc-----CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHH
Q 004073 644 ------------ATVLD-----TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLM 705 (775)
Q Consensus 644 ------------v~lL~-----~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~ 705 (775)
+.+|- ..+|.++..-+-+|+.||.-. ..++.+...|+.+.|-.+=.+ .++.+++..-.+..
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq 311 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQ 311 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 12332 357889999999999999865 567888888888877777665 46777787778888
Q ss_pred HhHhccCC
Q 004073 706 LFREQRQR 713 (775)
Q Consensus 706 ~L~~~~~~ 713 (775)
+|.+-.+.
T Consensus 312 ~Lv~~e~~ 319 (353)
T KOG2973|consen 312 MLVRLEPE 319 (353)
T ss_pred HHHhcccc
Confidence 88774443
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.75 E-value=0.00012 Score=68.13 Aligned_cols=120 Identities=12% Similarity=0.029 Sum_probs=101.7
Q ss_pred CcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHH
Q 004073 515 GVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN 591 (775)
Q Consensus 515 G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~ 591 (775)
+.+..|+.-...... ++...|-|.|++.++.|-..+.+.+++...|.-|... +...++.++.+|+|||.+..|+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHHH
Confidence 456666665554432 5778888999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhh
Q 004073 592 LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNS 635 (775)
Q Consensus 592 iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~ 635 (775)
|+++|++|..+..++++...+...++..|..|+.... .|..+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 9999999999999999888888999999999987543 3444443
No 72
>PF05536 Neurochondrin: Neurochondrin
Probab=97.75 E-value=0.00026 Score=82.62 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=115.1
Q ss_pred cHHHHHHHhccCChHHH--HHHHHhcccccCC----ccccccccCchHHHHHhhcCCC------CHHHHHHHHHHHHHhc
Q 004073 516 VIPLLEKMISNSNSHGA--ATALYLNLSFLDD----AKPIIGSSHAVPFLVELCKGKT------EHQCKLDALHALYNLS 583 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~~~~--AaaaL~~Ls~~~~----~k~~I~~~g~i~~LV~LL~~~~------~~~~k~~Al~aL~nLs 583 (775)
.+...+.+|++.++.+. +...+..+...++ .+..|.+.=+.+.|-+||+++. ....+.-|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45666778887765444 3333345544333 2334666656799999999841 3567888999999999
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCCh-HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDP-MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~-~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
..++....=--.+-||.|++.+...+. .+...|+.+|..++.+++|+..++.. |+|+.|++.+.+ .+...|.|+.+|
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~-g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLES-GAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhc-CCHHHHHHHHHh-CcchHHHHHHHH
Confidence 977643222224579999998876655 89999999999999999999999995 999999999987 777899999999
Q ss_pred HHhhcCC
Q 004073 663 FLLCNGN 669 (775)
Q Consensus 663 ~~Lc~~~ 669 (775)
.+++...
T Consensus 164 ~~Lls~~ 170 (543)
T PF05536_consen 164 LNLLSRL 170 (543)
T ss_pred HHHHHhc
Confidence 9998754
No 73
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=6.1e-06 Score=87.32 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=57.4
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASW 345 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~-~~l~pn~~l~~~i~~~ 345 (775)
+--+|.||||+++++--.+. .|+|.||+.||-+-+..|+..||.|++.+.. ..|.+....-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 45689999999999999988 6999999999999999999999999999865 4677666666777654
No 74
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00041 Score=80.46 Aligned_cols=195 Identities=16% Similarity=0.111 Sum_probs=152.0
Q ss_pred CcHHHHHHHhccCC---hHHHHHHHHhcccccCCccccccccCchHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCCC---
Q 004073 515 GVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS--- 587 (775)
Q Consensus 515 G~i~~Lv~lL~s~~---~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs~~~~--- 587 (775)
..|+.|..-+.+.. ++..|+..|..+| ..+|..+| ..|+++|+..|..+ .+++..+.++.+++++.++++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s--rkYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS--RKYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHH--HHHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 35777777776654 3677888887665 46788887 45689999999765 589999999999999987763
Q ss_pred ---ChH-----------HHH-HcCcHHHHHHhccCCChHHHHHHHHHHHHHhC--CcccHHHHhhCCCcHHHHHHHhcCC
Q 004073 588 ---NIP-----------NLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA--SAAGKEEMNSTPGLVSGLATVLDTG 650 (775)
Q Consensus 588 ---nk~-----------~iv-~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~--~~e~~~~i~~~~g~I~~Lv~lL~~~ 650 (775)
+-. .++ ..+-|..|+..+...+..++..++..|.+|-+ ..+.+..+..++.+|..|+.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 222 233 36788899999988899999999999999965 4577889999999999999999988
Q ss_pred CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-CCh---HHHHHHHHHHHHhHhccC
Q 004073 651 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GST---RGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 651 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~~---~~k~kA~~LL~~L~~~~~ 712 (775)
-.-+|..|+-.|..|.+.++...+.+.-+.++..|..++.. |.. -+-+-+..+|.+|-+...
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 88899999999999999887777777778899999988865 212 345666666665544433
No 75
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=4e-05 Score=86.16 Aligned_cols=75 Identities=27% Similarity=0.323 Sum_probs=67.4
Q ss_pred CCCCCCCCccccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 274 GQMPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 274 ~~~~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
.+..++|++|..|++..+|+|||++| +|.|.||+.|..++-. ..|.|..|.||+-.+.+||-.||.-|-.|....
T Consensus 846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 35678999999999999999999996 6999999999999875 568999999999999999999999999886543
No 76
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.69 E-value=0.0052 Score=67.41 Aligned_cols=276 Identities=17% Similarity=0.139 Sum_probs=181.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-------cCchHHHHHHhchhccCCCHHHHHHHHHHHHH
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-------NGFVVALLRFLESAVCERNSYAQEIGAMALFN 499 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-------~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~n 499 (775)
.+-.++..++.....+...-++..+-.+..++. .|..+.. .-.-+..+++|.. .|.-+++.+.+.|..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r----~d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDR-SRVDLFHDYAHKLKRTEWLSFLNLLNR----QDTFIVEMSFRILSK 140 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHhhhccchHHHHHHHhc----CChHHHHHHHHHHHH
Confidence 344455555443234555556666666665543 2222211 1235677888877 688888878888888
Q ss_pred hhccCCchhHHHHhhC-cHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhh-cCCCCHHHHHH
Q 004073 500 LAVNNNRNKELMLAAG-VIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC-KGKTEHQCKLD 574 (775)
Q Consensus 500 Ls~~~~~nk~~i~~~G-~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL-~~~~~~~~k~~ 574 (775)
++..... +....+-. ....|...++++.. ..-|+..|-.+...+++|..+....++..|+..| .+..+.+.+-.
T Consensus 141 la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq 219 (442)
T KOG2759|consen 141 LACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQ 219 (442)
T ss_pred HHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence 8753222 21111111 23444555655332 3557778888999999999999888889999988 44457899999
Q ss_pred HHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC-ChHHHHHHHHHHHHHhCCcccH-------HHHhhC----------
Q 004073 575 ALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGK-------EEMNST---------- 636 (775)
Q Consensus 575 Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~-~~~i~e~al~~L~nLa~~~e~~-------~~i~~~---------- 636 (775)
.+-+++-|+.++.-...+-..+.|+.|.+++.+. ...+..-+++++.||......+ ..++..
T Consensus 220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999999998888887789999999999763 4667788999999999877422 222220
Q ss_pred -----------------------------------------------------------------CCcHHHHHHHhcCC-
Q 004073 637 -----------------------------------------------------------------PGLVSGLATVLDTG- 650 (775)
Q Consensus 637 -----------------------------------------------------------------~g~I~~Lv~lL~~~- 650 (775)
-..+..|+++|...
T Consensus 300 ~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~ 379 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN 379 (442)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence 01122333333321
Q ss_pred CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 651 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 651 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
+|.+-.-|+.=+...-+..|+.+..+.+-|+=..++.|+.+.++++|-.|...++.|-
T Consensus 380 Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 2332223333333333344677788888899999999999999999999998887664
No 77
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.67 E-value=6.1e-05 Score=80.05 Aligned_cols=53 Identities=19% Similarity=0.464 Sum_probs=41.8
Q ss_pred Ccccccccccc-ccCce----ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004073 281 EELRCPISLQL-MYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT 333 (775)
Q Consensus 281 ~~f~CPIs~~~-m~dPV----~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~ 333 (775)
++..||+|..- ...|= +.+|||+||++||.+.|..|...||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 46789999982 33442 2379999999999998888888999999998766643
No 78
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.67 E-value=6.5e-05 Score=56.00 Aligned_cols=40 Identities=33% Similarity=0.282 Sum_probs=37.6
Q ss_pred ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004073 458 DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 458 ~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
+++++..+++.|+||.|+++|.+ .+..+|++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS----PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS----SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcC----CCHHHHHHHHHHHHHHh
Confidence 47899999999999999999997 89999999999999996
No 79
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.67 E-value=0.0077 Score=67.14 Aligned_cols=270 Identities=14% Similarity=0.117 Sum_probs=192.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...+.+. +.+++..+.+.+|.+..+. +.-..+.+.+.--.++.-|.... .+..-+++|+..+..+.. -..+..
T Consensus 29 ~i~~~lL~~-~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~-~~~~~~ 103 (371)
T PF14664_consen 29 RIQCMLLSD-SKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLE-IKKGPK 103 (371)
T ss_pred HHHHHHCCC-cHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHHH-hcCCcc
Confidence 333356666 6899999999999999874 44555667676666677776532 344556889888887743 222222
Q ss_pred HHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
-+..|++..|+.+....++ +..|.++|..++..+ -..+..+||+..|++.+-++ ..+..+..+.++..+-..+.
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcc
Confidence 2366889999999988665 467888998887653 34566689999999999987 77788999999999988888
Q ss_pred ChHHHHHcCcHHHHHHhccCC-------Ch--HHHHHHHHHHHHHhCCcccHHHHhhCC-CcHHHHHHHhcCCCHHHHHH
Q 004073 588 NIPNLLSAGIISGLQSLAVPG-------DP--MWTEKSLAVLLNLAASAAGKEEMNSTP-GLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~-------~~--~i~e~al~~L~nLa~~~e~~~~i~~~~-g~I~~Lv~lL~~~s~~~~e~ 657 (775)
.|..+...--+..++.-+.+. +. .....+..++..+-.+..|-..+.... .++..|+..|...++.+++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 887766544455555533221 22 233456666666667777777766543 68999999999999999999
Q ss_pred HHHHHHHhhcCC-----------------hHh-----------------------------------HHHHHHCCCHHHH
Q 004073 658 AVSCLFLLCNGN-----------------EKC-----------------------------------CQMVLQEGVIPAL 685 (775)
Q Consensus 658 Av~~L~~Lc~~~-----------------~~~-----------------------------------~~~v~~~G~i~~L 685 (775)
.+.+|..+-.-. ... ....++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 999888774210 000 2234567999999
Q ss_pred HHhhhcC-ChHHHHHHHHHHHHhH
Q 004073 686 VSISVNG-STRGRDKAQRLLMLFR 708 (775)
Q Consensus 686 v~Ll~~g-~~~~k~kA~~LL~~L~ 708 (775)
+.+..+. ++....||.-||..+-
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHH
Confidence 9998887 8889999999887553
No 80
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.64 E-value=0.00083 Score=73.70 Aligned_cols=242 Identities=14% Similarity=0.138 Sum_probs=166.6
Q ss_pred hHHhhccCchHHHHHHhchhccCCCH--HHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHH
Q 004073 462 RVFTGANGFVVALLRFLESAVCERNS--YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATAL 536 (775)
Q Consensus 462 r~~i~~~G~I~~Lv~lL~s~~~~~d~--~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~Aaaa 536 (775)
+..|...|++..|++++.+ .+. .++..+...|-.+. ..+|+..++.-| +..|+.+-+-..+ ....+.+
T Consensus 173 CD~iR~~~~lD~Llrmf~a----Pn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~i 245 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQA----PNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGI 245 (832)
T ss_pred hhHhhccchHHHHHHHHhC----CchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHH
Confidence 3457778999999999987 444 44678888887774 367888888766 4455555433222 2446777
Q ss_pred Hhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC--CCChHHHHHcCcHHHHHHhccCCChHHH
Q 004073 537 YLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQSLAVPGDPMWT 613 (775)
Q Consensus 537 L~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~--~~nk~~iv~aG~V~~Lv~LL~~~~~~i~ 613 (775)
|.++-.+ ++....+.+.|++..++-..+.. ++....+++-||.|++.+ ...+.+||+..+-+.|..|-.+.+.-++
T Consensus 246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 246 LEHMFKHSEETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLR 324 (832)
T ss_pred HHHHhhhhHHHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence 7776654 44566777789999998888887 899999999999999865 4589999999999999998877777777
Q ss_pred HHHHHHHHHHhCCcccHHHHhhC------------------------------CCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 614 EKSLAVLLNLAASAAGKEEMNST------------------------------PGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 614 e~al~~L~nLa~~~e~~~~i~~~------------------------------~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
-.|+-+.+.|+.+.+.-..+..+ ..-+..|+.+|.+ .+.-..++++++
T Consensus 325 ~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS--~R~EAq~i~AF~ 402 (832)
T KOG3678|consen 325 LHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDS--NRLEAQCIGAFY 402 (832)
T ss_pred HHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhc--chhhhhhhHHHH
Confidence 88888888888876544433321 1224445555542 222334444443
Q ss_pred Hhhc---CChHh-HHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004073 664 LLCN---GNEKC-CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 664 ~Lc~---~~~~~-~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
-.+. .+... ....-+-|+|+.|-.+..+.+..+-.-|...|+.+.+.-+.
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~ 456 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPY 456 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccCh
Confidence 2221 11122 33444559999999998877777777888899988765544
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.60 E-value=0.0069 Score=67.48 Aligned_cols=256 Identities=16% Similarity=0.090 Sum_probs=174.7
Q ss_pred HHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccC
Q 004073 448 VEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS 527 (775)
Q Consensus 448 l~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~ 527 (775)
+..|..+.+..++.|..+.-.-.++.+..++-+ ++..++..|..++..+. .+...-..+.+.+.--.++.-|...
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~----~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~ 78 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLS----DSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhccc
Confidence 345666677777777776666666666654444 45888888999998885 4677777777877666677777654
Q ss_pred C----hHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHH
Q 004073 528 N----SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS 603 (775)
Q Consensus 528 ~----~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~ 603 (775)
. +++.|...+..+.........+ ..|++..||.+..+. +...+..|+.+|..|+.. |-..++.+||+..|++
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~-~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~ 154 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHE-DDRLRRICLETLCELALL--NPELVAECGGIRVLLR 154 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHH
Confidence 3 2567888877665554332223 368899999999987 889999999999999863 3346678999999999
Q ss_pred hccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC-------C---HHHHHHHHHHHHHhhcCChHhH
Q 004073 604 LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-------E---LIEQEQAVSCLFLLCNGNEKCC 673 (775)
Q Consensus 604 LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~-------s---~~~~e~Av~~L~~Lc~~~~~~~ 673 (775)
.+.++...+.+.++.++..+-.++..|.-+... --+..++.-.... . ...+..+..+...|-+.+ .-.
T Consensus 155 ~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-GLl 232 (371)
T PF14664_consen 155 ALIDGSFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-GLL 232 (371)
T ss_pred HHHhccHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-cee
Confidence 777776668899999999999999998877653 2344444433321 1 123333333333333333 121
Q ss_pred HHHHHC-CCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCCC
Q 004073 674 QMVLQE-GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 674 ~~v~~~-G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
..-... .++..|+..+..+++++|+....+|.-+=+...-.
T Consensus 233 ~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~ 274 (371)
T PF14664_consen 233 YLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPS 274 (371)
T ss_pred eeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 111122 47888999999999999999988877666555443
No 82
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.59 E-value=5.7e-05 Score=56.33 Aligned_cols=40 Identities=38% Similarity=0.375 Sum_probs=37.3
Q ss_pred CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
++|+..++++|+||+|+.+|.+++..+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999984
No 83
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.57 E-value=5.9e-05 Score=57.27 Aligned_cols=41 Identities=20% Similarity=0.525 Sum_probs=35.3
Q ss_pred ccccccccc---cCceecCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004073 284 RCPISLQLM---YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQ 325 (775)
Q Consensus 284 ~CPIs~~~m---~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~ 325 (775)
.||||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999988 457888999999999999999 45678999974
No 84
>PF05536 Neurochondrin: Neurochondrin
Probab=97.52 E-value=0.003 Score=73.93 Aligned_cols=238 Identities=15% Similarity=0.167 Sum_probs=154.1
Q ss_pred hHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc---hhHHHHhhCcHHHHHHHhccCCh---------HHHHHHHHh
Q 004073 471 VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR---NKELMLAAGVIPLLEKMISNSNS---------HGAATALYL 538 (775)
Q Consensus 471 I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~---nk~~i~~~G~i~~Lv~lL~s~~~---------~~~AaaaL~ 538 (775)
+..-+++|++ .+-.-+-.|+..+-++...++. .+..+.++=+.+-|-++|+++.. ..-|+++|.
T Consensus 7 l~~c~~lL~~----~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 7 LEKCLSLLKS----ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHhcc----CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4556678877 4423334555566666543332 24456676668899999987431 244888888
Q ss_pred cccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHH
Q 004073 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLA 618 (775)
Q Consensus 539 ~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~ 618 (775)
.++..++....-.-.+-||.|++.+.+..+.....+|+.+|..++..++.+..+++.|+|+.|++.+.+ .....+.|+.
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 888866554322224789999999988733499999999999999999999999999999999998876 3445699999
Q ss_pred HHHHHhCCcccHHHHhhCCC----cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHh-HHHHHHCC----CHHHHHHhh
Q 004073 619 VLLNLAASAAGKEEMNSTPG----LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC-CQMVLQEG----VIPALVSIS 689 (775)
Q Consensus 619 ~L~nLa~~~e~~~~i~~~~g----~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~-~~~v~~~G----~i~~Lv~Ll 689 (775)
+|.+++.... ...+-.+.. .+..|...........+-.++..|..+-...+.. ........ +..-|..++
T Consensus 162 lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 9999987543 222212222 3344444444444455666677777766544211 12222223 333445556
Q ss_pred hc-CChHHHHHHHHHHHHhHhccCCC
Q 004073 690 VN-GSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 690 ~~-g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
.+ -++..|..|..+...|-+....+
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 55 46777888888887777764433
No 85
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.48 E-value=0.0095 Score=67.20 Aligned_cols=131 Identities=16% Similarity=0.042 Sum_probs=69.3
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh-
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN- 634 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~- 634 (775)
.++|..+|++. ++.++..|+.+|..|- ...+++.|...+.+.++.++..|+..|..+-. ++....+.
T Consensus 149 ~~~L~~~L~d~-d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 149 GPALEAALTHE-DALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 45555555555 5555555555555542 12344445555555555555555555544322 11111110
Q ss_pred --------------------hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCCh
Q 004073 635 --------------------STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGST 694 (775)
Q Consensus 635 --------------------~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~ 694 (775)
..+..++.|..+++. +.+++.++.+|..+-.. .+++.|+..+.+.
T Consensus 217 ~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~-- 281 (410)
T TIGR02270 217 FQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALRAVGLVGDV-----------EAAPWCLEAMREP-- 281 (410)
T ss_pred HHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--
Confidence 011334445555543 22555555555544332 3688888877544
Q ss_pred HHHHHHHHHHHHhHhccCC
Q 004073 695 RGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 695 ~~k~kA~~LL~~L~~~~~~ 713 (775)
..++.|...++.+.+.+-.
T Consensus 282 ~~aR~A~eA~~~ItG~~l~ 300 (410)
T TIGR02270 282 PWARLAGEAFSLITGMDVA 300 (410)
T ss_pred HHHHHHHHHHHHhhCCCcc
Confidence 4999999999999875544
No 86
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=7.9e-05 Score=76.42 Aligned_cols=54 Identities=20% Similarity=0.430 Sum_probs=46.9
Q ss_pred CCCC-CccccccccccccCceecCCCCccchHHHHH-HHhcCCCCCCCCCCCCCCC
Q 004073 277 PLPP-EELRCPISLQLMYDPVIIASGQTYERICIEK-WLSDGHSTCPKTQQKLPHL 330 (775)
Q Consensus 277 ~~~p-~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~-w~~~~~~~CP~t~~~l~~~ 330 (775)
+-+| .+|.|+||++.|.+|+-.+|||.||=.||-. |-.+....||.||+...+.
T Consensus 209 pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 209 PFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred CcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 3344 7899999999999999999999999999999 8877677899999876544
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.41 E-value=6.9e-05 Score=81.29 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=47.4
Q ss_pred cccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 283 LRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
|.|.|++++-++||+.+ +||.|||+.|++++.+ +.+||+|+++|+..+|+|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence 57999999999999985 8999999999999987 7799999999998888763
No 88
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.37 E-value=0.00016 Score=81.01 Aligned_cols=68 Identities=26% Similarity=0.469 Sum_probs=57.5
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP-NYCVKGLIASWCE 347 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p-n~~l~~~i~~~~~ 347 (775)
+.+++.||+|..++.||+.. .|||.||+.||.+|+.. +..||.|++.+......| -..++..+..|-.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPI 87 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccc
Confidence 56889999999999999994 99999999999999988 889999999887776665 3456777766633
No 89
>PTZ00429 beta-adaptin; Provisional
Probab=97.37 E-value=0.033 Score=67.37 Aligned_cols=258 Identities=11% Similarity=0.027 Sum_probs=165.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+...+..+.+. +.+.|+-+--.|...++.+++.-. -+|..|.+-|.+ .|+.++-.|+.+|.++-. +
T Consensus 68 ~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d----~Np~IRaLALRtLs~Ir~--~ 135 (746)
T PTZ00429 68 YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTN----SSPVVRALAVRTMMCIRV--S 135 (746)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCC----CCHHHHHHHHHHHHcCCc--H
Confidence 5566666666666 888888888888888876655321 123445555554 799999999998888732 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
. + -.-.++.+.+.|...+. +..|+-++..+-.. +...+-..|.++.|.++|.+. ++.+..+|+.+|+.+.
T Consensus 136 ~----i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~--~pelv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 136 S----V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD--DMQLFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVN 207 (746)
T ss_pred H----H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--CcccccccchHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence 1 1 12356667777776665 45555555555332 223444568899999999988 9999999999999998
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
........ ...+.+..|+..|.+.+.-.+-..+.+|.... +...... ...+..+...|.+.++.+.=.|+.+++
T Consensus 208 ~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il 281 (746)
T PTZ00429 208 DYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVA 281 (746)
T ss_pred HhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 65443322 33556677777776666665666666664422 2222221 246777788888888999999999999
Q ss_pred HhhcCC-hHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 664 LLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 664 ~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
++.... ++....+. ..+.++|+.|+ ++.+++|--+..-|..+....
T Consensus 282 ~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 282 NLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred HhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC
Confidence 887542 22211111 11235566663 566778877776665555433
No 90
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00015 Score=80.25 Aligned_cols=73 Identities=23% Similarity=0.446 Sum_probs=61.3
Q ss_pred CCCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCC-----CCcccHHHHHHHHHHHHH
Q 004073 275 QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL-----CLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~-----~l~pn~~l~~~i~~~~~~ 348 (775)
....++.+|-|-||...+.+||+++|||+||+.||.+.++ ...-||.|+.++... ...+|+.+..+|..++..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456789999999999999999999999999999999777 367899999988742 345678888888888765
No 91
>PTZ00429 beta-adaptin; Provisional
Probab=97.28 E-value=0.045 Score=66.19 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=163.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..+-..|.+. +...+++|++.|-.....+.+. .-+.+-.++++.+ .|...+.-....|.+++..+++.
T Consensus 34 ~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S----~d~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 34 GAELQNDLNGT-DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS----TDLELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccChHH
Confidence 44555667777 7778888888776655443322 2345566777777 78888888888888886432221
Q ss_pred hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004073 508 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
.. =++..|.+=|.+.+. +..|..+|.++-..+ +. .-.++++.+.|.+. ++-+++.|+.++..|-..
T Consensus 103 -al----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~-e~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 103 -AL----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL-EYTLEPLRRAVADP-DPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred -HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Confidence 11 145666776776665 455666666543211 11 23467778888887 999999999999999643
Q ss_pred CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
.. ..+.+.|.++.|.++|.+.++.++..|+.+|..+.......-.+. .+.+..|+..|...++..|-..+.+|...
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 33 344567899999999999999999999999999986543332222 24577788888777888888766666432
Q ss_pred hcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 666 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 666 c~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
.-.+.... ..++..+...+.+.++-+.-.|.+++-.+.
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 21111111 134555555566667777777776665554
No 92
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00017 Score=80.34 Aligned_cols=71 Identities=24% Similarity=0.453 Sum_probs=56.9
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhc----CCCCCCCCCCCCCCCCCcccH----HHHHHHHHHHHHcCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD----GHSTCPKTQQKLPHLCLTPNY----CVKGLIASWCEMNGV 351 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~----~~~~CP~t~~~l~~~~l~pn~----~l~~~i~~~~~~~~i 351 (775)
.+..||||++-..=|+...|||.||=.||-.+|.. +...||.|+..+...+|.|-+ .-+.-++..+..||+
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 38999999999999999999999999999998863 456799999988877666632 234446667777773
No 93
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.25 E-value=0.00026 Score=59.99 Aligned_cols=39 Identities=33% Similarity=0.763 Sum_probs=32.1
Q ss_pred cccccccccCc-------------eecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004073 285 CPISLQLMYDP-------------VIIASGQTYERICIEKWLSDGHSTCPKTQ 324 (775)
Q Consensus 285 CPIs~~~m~dP-------------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~ 324 (775)
|+||++-|.|| +..+|||.|-..||.+|+.. +.+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999554 33489999999999999986 45999996
No 94
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.15 E-value=0.0002 Score=75.72 Aligned_cols=65 Identities=15% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL----CLTPNYCVKGLIAS 344 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~----~l~pn~~l~~~i~~ 344 (775)
+-....|++|..+|.|+-++ -|=|||||+||-++|.. ..+||.|+..+..+ .+.+..+|+.++..
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 44578999999999999987 69999999999999998 88999999777654 36777788777744
No 95
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.14 E-value=0.00056 Score=70.68 Aligned_cols=66 Identities=27% Similarity=0.428 Sum_probs=56.8
Q ss_pred cccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHH
Q 004073 283 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQK-LPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~-l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
+.||+|+.|++.|+-. +|||+||..||+..+-+....||.|... +--..|+|.+..+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999988 7899999999999988778899999653 3346799999888888887664
No 96
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.09 E-value=0.004 Score=64.44 Aligned_cols=180 Identities=17% Similarity=0.127 Sum_probs=108.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhccC--hhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHH
Q 004073 436 NEGENLGQKCNIVEQIRLLLKDD--EEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELM 511 (775)
Q Consensus 436 ~s~~~~~~q~~Al~~L~~Lak~~--~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i 511 (775)
.+. +|+.|.+|+..|+.+.+.+ ......+.+ ...+..+...+.+ ....+...|+.++..++..-. +...-
T Consensus 17 ~~~-~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~-~~~~~ 90 (228)
T PF12348_consen 17 SES-DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLG-SHFEP 90 (228)
T ss_dssp T-S-SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHG-GGGHH
T ss_pred Ccc-CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHh-HhHHH
Confidence 344 9999999999999999887 333333332 2455666666665 566788889999888875322 22222
Q ss_pred HhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCc-hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC-
Q 004073 512 LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHA-VPFLVELCKGKTEHQCKLDALHALYNLSTIPS- 587 (775)
Q Consensus 512 ~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~-i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~- 587 (775)
.-...+|.|+..+..+.. ++.|..+|..+...-.+. ... ++.+...+.+. ++.++..++..|..+.....
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccc
Confidence 234588999999988765 466777776665543211 123 56666777777 99999999999999875444
Q ss_pred ChHHHHH----cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc
Q 004073 588 NIPNLLS----AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 588 nk~~iv~----aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~ 627 (775)
+...+-. ..+++.+...+.++++.+++.|-.++..+...-
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 2222222 346777888899999999999999999886543
No 97
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0073 Score=63.83 Aligned_cols=191 Identities=14% Similarity=0.132 Sum_probs=132.7
Q ss_pred HHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHH-hhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccc
Q 004073 472 VALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML-AAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPII 550 (775)
Q Consensus 472 ~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~-~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I 550 (775)
..|+.||.+ .++.++..|+.-|.+++. . ..+.... +.-.++.+..++......+.|+.+|-|++.....+..+
T Consensus 6 ~elv~ll~~----~sP~v~~~AV~~l~~lt~-~-~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 6 VELVELLHS----LSPPVRKAAVEHLLGLTG-R-GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHhcc----CChHHHHHHHHHHhhccc-c-chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHH
Confidence 357888988 788999999999999964 2 3333322 23478888999877665678999999999998887777
Q ss_pred cccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH--c----CcHHHHHH-hccCC-C-hHHHHHHHHHHH
Q 004073 551 GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--A----GIISGLQS-LAVPG-D-PMWTEKSLAVLL 621 (775)
Q Consensus 551 ~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~--a----G~V~~Lv~-LL~~~-~-~~i~e~al~~L~ 621 (775)
.+. .+..|++++-+. ....-+..+..|.||+..++-...+.. . .++..|+. +...+ + ..-....+-++.
T Consensus 80 l~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 655 888999999877 556778899999999988775544432 2 33444444 33332 1 122367888999
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCh
Q 004073 622 NLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE 670 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~ 670 (775)
||+....||.-+....-+....+..+.. ++.--+...+++|.|.|-...
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~ 207 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK 207 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch
Confidence 9999999999887642111111111222 445557788999999887653
No 98
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.05 E-value=0.013 Score=64.75 Aligned_cols=231 Identities=16% Similarity=0.160 Sum_probs=155.5
Q ss_pred HHHHHHHHHhcCCCHHH--HHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 427 RYQDFLNVLNEGENLGQ--KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~--q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
.+..|+.++.+. +.+. +.++.+.|..+.. .+||..++.-| +..++.+-+. ...++.+...+..|.++=.++
T Consensus 181 ~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~---~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 181 GLDLLLRMFQAP-NLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKE---REPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hHHHHHHHHhCC-chhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhh---cCcHHHHHHHHHHHHHHhhhh
Confidence 344567777777 5544 8888888888775 47888888866 5555554443 256788888899999986666
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC--CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~--~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
++....+++.|++..++-..+..+. ...++-+|.|++.+. +.+..|.+..+-+-|.-|-.+. +.-.+-+|+-|..
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AClAV~ 332 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHACLAVA 332 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHHHHHh
Confidence 6667888999999998888776655 366778888877653 4566677666667777776666 7889999999999
Q ss_pred HhcCCCCChHHHHHcC---cHHHHHHhccCC-------------ChHH-------------HHHHHHHHHHHhC----Cc
Q 004073 581 NLSTIPSNIPNLLSAG---IISGLQSLAVPG-------------DPMW-------------TEKSLAVLLNLAA----SA 627 (775)
Q Consensus 581 nLs~~~~nk~~iv~aG---~V~~Lv~LL~~~-------------~~~i-------------~e~al~~L~nLa~----~~ 627 (775)
-|+++.+.-..+-+.| .|++|+..++.+ .+.+ -..++++....+. ..
T Consensus 333 vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~ 412 (832)
T KOG3678|consen 333 VLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSL 412 (832)
T ss_pred hhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHh
Confidence 9999888777766666 445555544311 0111 1234444433222 23
Q ss_pred ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 628 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 628 e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
.|+..+...-|+|..|-++.++.+......|-.+|--|
T Consensus 413 Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 413 QGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred ccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 45555555558899988888866555555555555444
No 99
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00022 Score=83.14 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=49.2
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p 334 (775)
.-++||.|..=.+|-|++.|||.||-.||++-+......||.|+..+...++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 457999999999999999999999999999999987899999999998777655
No 100
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.051 Score=66.37 Aligned_cols=266 Identities=16% Similarity=0.151 Sum_probs=166.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.+. +.+++.+|-+.+..+..... .++.|..++... .|+.++.-|+-.++.+....-
T Consensus 4 ~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~---~~p~~Rq~aaVl~Rkl~~~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSP-DNEVRRQAEEALETLAKTEP----------LLPALAHILATS---ADPQVRQLAAVLLRKLLTKHW 69 (1075)
T ss_pred hHHHHHHHHhcCC-CchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHh
Confidence 4577889999998 88889999999988876532 678888888774 788888777777777753211
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.+-..=.....-..|+..+.+... +..-+-++..++..+--- .=.+.++.|++-++++ ++..++.|+.+|+++
T Consensus 70 ~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~-~~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 70 SRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSP-NPSLRESALLILSSL 145 (1075)
T ss_pred hcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCC-CcchhHHHHHHHHhh
Confidence 010001112233344555544432 334444444444432111 1157788888888898 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhc----CCCHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLD----TGELIEQEQ 657 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~----~~s~~~~e~ 657 (775)
...-.|...=.=....+.+.+-+.+++..++-.|+.++...+..-+ +....-.-...+|.++..+. .++.+.-..
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 8655553321001123333444556555588899998888876443 33322222245676666665 466666777
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHHHHhHhc
Q 004073 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL~~L~~~ 710 (775)
+..+|-.+....+......+.. ++..-+.+..+. ++.+|..|..+|-.+.+.
T Consensus 226 ~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 226 ALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 8888888877665554444332 444445555553 678888888888777776
No 101
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.99 E-value=0.064 Score=61.47 Aligned_cols=240 Identities=16% Similarity=0.142 Sum_probs=156.2
Q ss_pred CCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccC-CCHHHHHHHHHHHHHhhccCCchhHHHHh-hCc
Q 004073 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCE-RNSYAQEIGAMALFNLAVNNNRNKELMLA-AGV 516 (775)
Q Consensus 439 ~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-~G~ 516 (775)
.+.++..+|++.|.++.-.++..|..+.+.|..+.++..|+..... .+.++.--....|+-++......+..+++ .++
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 3789999999999999999999999999999999999999874221 25667777777777776545556666664 578
Q ss_pred HHHHHHHhcc--------CC--------h---HHHHHHHHhcccccCCccccccccCchHHHHHhhcC--------CCCH
Q 004073 517 IPLLEKMISN--------SN--------S---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG--------KTEH 569 (775)
Q Consensus 517 i~~Lv~lL~s--------~~--------~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~--------~~~~ 569 (775)
+..|+..|.. .. . ...+..++||+.........-...+.++.|+.+|.. ....
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~ 203 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLD 203 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence 8888877632 00 1 134777788887754433321124556666665431 1134
Q ss_pred HHHHHHHHHHHHhcCCC-C-------ChHH----HHHcCcHHHHHHhccC----C---C-hHHHHHHHHHHHHHhCCcc-
Q 004073 570 QCKLDALHALYNLSTIP-S-------NIPN----LLSAGIISGLQSLAVP----G---D-PMWTEKSLAVLLNLAASAA- 628 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~-~-------nk~~----iv~aG~V~~Lv~LL~~----~---~-~~i~e~al~~L~nLa~~~e- 628 (775)
....+++.+|.|+-... . +... -....++..|+.+|.. . . .....-.+.+|.+++....
T Consensus 204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~ 283 (446)
T PF10165_consen 204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE 283 (446)
T ss_pred hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence 57888888888882110 0 0101 1123366777777642 1 1 1334567778888887643
Q ss_pred cHHHHhh---------------CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC
Q 004073 629 GKEEMNS---------------TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 680 (775)
Q Consensus 629 ~~~~i~~---------------~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G 680 (775)
.|..+.. ....-..|++++.+..+.++..+...|+.||..+ ..+.+..-|
T Consensus 284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d--~~~~v~~~G 348 (446)
T PF10165_consen 284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED--ASRFVKYVG 348 (446)
T ss_pred HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh--HHHHHHHcC
Confidence 3333322 3345667999998888999999999999999876 344444444
No 102
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.083 Score=58.44 Aligned_cols=240 Identities=14% Similarity=0.107 Sum_probs=167.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh---------hhhHHhhccCchHHHHHHhchhccC--CCHHHHHHHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE---------EARVFTGANGFVVALLRFLESAVCE--RNSYAQEIGA 494 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~---------~nr~~i~~~G~I~~Lv~lL~s~~~~--~d~~~qe~A~ 494 (775)
..+..|+..|.+. +.++-..++.-|..|+..+. ..-..+++.++++.||+-+..-..+ ++.....+++
T Consensus 125 n~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 125 NAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred ccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 4577888999888 89999999999999987531 2334577889999999888652111 2234456667
Q ss_pred HHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh----HHHHHHHHhcc-cccCCccccccccCchHHHHHhhc-----
Q 004073 495 MALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNL-SFLDDAKPIIGSSHAVPFLVELCK----- 564 (775)
Q Consensus 495 ~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~----~~~AaaaL~~L-s~~~~~k~~I~~~g~i~~LV~LL~----- 564 (775)
..+-|+..-.+.-...+++.|.+..|+.-+..... ...|.-+|.-+ ...++++...+.-.+|..|++-+.
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 78888876555566777788877776665544321 34566666544 344568889998888888887663
Q ss_pred C---CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH---HHhhCCC
Q 004073 565 G---KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE---EMNSTPG 638 (775)
Q Consensus 565 ~---~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~---~i~~~~g 638 (775)
+ +...+..++-...|+.+...+.|+.+++...+++...=++.. ....+-.++.+|-.+..++++.. .+++. +
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~-l 361 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI-L 361 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH-H
Confidence 2 113567888889999999999999999999888877666655 33445778999999888887554 55553 5
Q ss_pred cHHHHHHHhc----------CCCHHHHHHHHHHHHHhhcC
Q 004073 639 LVSGLATVLD----------TGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 639 ~I~~Lv~lL~----------~~s~~~~e~Av~~L~~Lc~~ 668 (775)
|...+..+.- ......-|+.+.+|+++-.+
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 5555554432 12345678888899888653
No 103
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.035 Score=66.44 Aligned_cols=117 Identities=10% Similarity=0.121 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhc----cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHH
Q 004073 443 QKCNIVEQIRLLLKDDEEARVFTGA----NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 518 (775)
Q Consensus 443 ~q~~Al~~L~~Lak~~~~nr~~i~~----~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~ 518 (775)
.-.-++.+|+++.+.+++.-..++. -|-.+.+..+|... .++.+|.-|+.++..+.. +.+...-|++.|++.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 3345788999999988865554433 37778888888763 678899999998888754 677888899999999
Q ss_pred HHHHHhccCCh-HHHHHHHHhcccccCCccccccccCchHHHHHhh
Q 004073 519 LLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC 563 (775)
Q Consensus 519 ~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL 563 (775)
.|+.+|.+..+ ++.+.-+|+.|+.+.+.-..-.+.|++.-+..++
T Consensus 1817 ~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~ 1862 (2235)
T KOG1789|consen 1817 TLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSIL 1862 (2235)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHH
Confidence 99999998665 7778888888887765444444456555555444
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.85 E-value=0.037 Score=63.44 Aligned_cols=265 Identities=16% Similarity=0.146 Sum_probs=168.5
Q ss_pred HHHHHHHHhccChhhhHHhhccCchHHHHHHhc------hhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHH
Q 004073 447 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLE------SAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL 520 (775)
Q Consensus 447 Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~------s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~L 520 (775)
++..||.+.++ +.+-..+....++..|+++-. ......+..+...|+.+|.|+...++..|...++.|+.+.+
T Consensus 1 ~L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 35677777765 445556666666777766551 11223678899999999999988778889888999999999
Q ss_pred HHHhccCC-----h--HHHHHHHHhcccc-cCCccccccc-cCchHHHHHhhcC--------C--------CCHHHHHHH
Q 004073 521 EKMISNSN-----S--HGAATALYLNLSF-LDDAKPIIGS-SHAVPFLVELCKG--------K--------TEHQCKLDA 575 (775)
Q Consensus 521 v~lL~s~~-----~--~~~AaaaL~~Ls~-~~~~k~~I~~-~g~i~~LV~LL~~--------~--------~~~~~k~~A 575 (775)
+..|+... . .--...+||.+.. ..+.+..+.. .+++..|+..|.. . .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 99998762 2 2337777776554 3445544444 5777777766531 0 145678889
Q ss_pred HHHHHHhcCCCCChHHHHHcCcHHHHHHhcc------C---CChHHHHHHHHHHHHHhCC-ccc-------HHHH---hh
Q 004073 576 LHALYNLSTIPSNIPNLLSAGIISGLQSLAV------P---GDPMWTEKSLAVLLNLAAS-AAG-------KEEM---NS 635 (775)
Q Consensus 576 l~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~------~---~~~~i~e~al~~L~nLa~~-~e~-------~~~i---~~ 635 (775)
+++|||+..+......--..+.++.|+.++. . +.....-.++.+|.|+--. ... ...+ ..
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 9999999865443332233455555555432 1 1234456777888877211 010 0000 11
Q ss_pred CCCcHHHHHHHhcC----CC----HHHHHHHHHHHHHhhcCChHhHHHHHHC--------------C--CHHHHHHhhhc
Q 004073 636 TPGLVSGLATVLDT----GE----LIEQEQAVSCLFLLCNGNEKCCQMVLQE--------------G--VIPALVSISVN 691 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~----~s----~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--------------G--~i~~Lv~Ll~~ 691 (775)
....+..|+.+|.. .. ...-.-.+.+|..+|..+...++.+... | .-..|+.|+.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 23467778888762 11 1334455667777777664555555442 2 45578999999
Q ss_pred CChHHHHHHHHHHHHhHhccC
Q 004073 692 GSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 692 g~~~~k~kA~~LL~~L~~~~~ 712 (775)
..+.+|..+..+|..|++...
T Consensus 320 ~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred CCchHHHHHHHHHHHHHhhhH
Confidence 999999999999988876544
No 105
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0072 Score=67.83 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=133.5
Q ss_pred HHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhcc
Q 004073 447 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN 526 (775)
Q Consensus 447 Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s 526 (775)
++..|..+.+.-.-.|.-+.++...++|+++|+. ++..+.--+...+.|+....+.-+..+.+.|.|..|+.++.+
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~----Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN----PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC----ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 3445555555545567778888999999999987 566666667788999877666678889999999999999987
Q ss_pred CCh--HHHHHHHHhcccccCCcc--ccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CC---hHHHHHcC--
Q 004073 527 SNS--HGAATALYLNLSFLDDAK--PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SN---IPNLLSAG-- 596 (775)
Q Consensus 527 ~~~--~~~AaaaL~~Ls~~~~~k--~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~n---k~~iv~aG-- 596 (775)
.++ +.+..|.+..+..++++- -...+.-++..++.+.+++ ...++...+..|.|+..+. .| +.-.+++-
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 655 577899999888776543 3444566789999999998 9999999999999996532 22 33333322
Q ss_pred --cHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh
Q 004073 597 --IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 634 (775)
Q Consensus 597 --~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~ 634 (775)
....|++.+...++-..+..+.+|.++|.+.+....++
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 22334444555666666777888988888877766544
No 106
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.75 E-value=0.0026 Score=46.75 Aligned_cols=39 Identities=28% Similarity=0.276 Sum_probs=35.5
Q ss_pred hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004073 459 EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 459 ~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
++++..+.+.|+|+.|+.+|.+ .+..++..|+++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~----~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKS----EDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHc
Confidence 4588889999999999999986 78999999999999996
No 107
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.69 E-value=0.0029 Score=46.47 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=36.4
Q ss_pred CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
++++..+++.|+++.|+++|.+++..++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889999999999999998899999999999999973
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.17 Score=56.03 Aligned_cols=234 Identities=15% Similarity=0.071 Sum_probs=162.0
Q ss_pred HHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc----C-Cc----hhHHHHhhCcH
Q 004073 447 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN----N-NR----NKELMLAAGVI 517 (775)
Q Consensus 447 Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~----~-~~----nk~~i~~~G~i 517 (775)
.+.++..+|.- ++.--.+++.++++.|+.+|.. +|.++-...+..|..|+-. . .+ -...+++.+++
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgH----eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGH----ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcC----CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 45666666654 6677778999999999999998 7888888888888888621 1 11 14455678899
Q ss_pred HHHHHHhccCCh--------HHHHHHHHhcccccC-CccccccccCchHHHHHhhc-CCCCHHHHHHHHHHHHHhcCCCC
Q 004073 518 PLLEKMISNSNS--------HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 518 ~~Lv~lL~s~~~--------~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~-~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
+.|+.-+..-+. ..++.+++.|+...+ +....+.+.|.+.-|+.-+. .+.-..-+..|..+|.-+-.+.+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 999988865322 245777777776543 45556666676666665333 22123456777788877776554
Q ss_pred -ChHHHHHcCcHHHHHHhcc-----C---C-ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHH
Q 004073 588 -NIPNLLSAGIISGLQSLAV-----P---G-DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 588 -nk~~iv~aG~V~~Lv~LL~-----~---~-~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~ 657 (775)
|+..+-...+|..|++-+. + . ...+.+.....|+.+...++++..++.. .++... .++-......+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlqLm-~Lmlr~Kk~sr~S 336 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQLM-NLMLREKKVSRGS 336 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHHHH-HHHHHHHHHhhhh
Confidence 8888888999999988552 1 1 2455566777777777789999999986 445543 3443335567788
Q ss_pred HHHHHHHhhcCCh--HhHHHHHHCCCHHHHHH
Q 004073 658 AVSCLFLLCNGNE--KCCQMVLQEGVIPALVS 687 (775)
Q Consensus 658 Av~~L~~Lc~~~~--~~~~~v~~~G~i~~Lv~ 687 (775)
|+.+|-.+..+.+ .++...++.++...+..
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~ 368 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFP 368 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHH
Confidence 9999988776654 67888888887777763
No 109
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.015 Score=65.37 Aligned_cols=185 Identities=14% Similarity=0.040 Sum_probs=133.9
Q ss_pred HHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHH
Q 004073 494 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQ 570 (775)
Q Consensus 494 ~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~ 570 (775)
+.+|..++.+-.--|.-+.+..+..+|+.+|..+..+ ..+...++|+..- ..-+..+...|.|..|++++.+. +..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-Dda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-DDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-hhh
Confidence 3444555432222355566778999999999997764 3477777777654 44466666789999999999988 889
Q ss_pred HHHHHHHHHHHhcCCCCC--hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc----ccHHHHhh---CCCcHH
Q 004073 571 CKLDALHALYNLSTIPSN--IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA----AGKEEMNS---TPGLVS 641 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~n--k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~----e~~~~i~~---~~g~I~ 641 (775)
.+.+..|.|++|..+.++ +-+.+..-++..++++.+++...+++.++.+|.|+.-+. +.+.-... ..-...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999876543 566777889999999999999999999999999996522 12221111 112345
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC
Q 004073 642 GLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 642 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 679 (775)
.|++.+....|-..+..+.+|.+++..+..-.+.+.+.
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 67777888888877788999998887765555655544
No 110
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.62 E-value=0.0031 Score=54.64 Aligned_cols=85 Identities=25% Similarity=0.364 Sum_probs=68.7
Q ss_pred hHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh
Q 004073 556 VPFLVELC-KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 634 (775)
Q Consensus 556 i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~ 634 (775)
||.|++.| +++ ++.++..|+.+|.++- ...+++.|++++.++++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 68999999 666 9999999999998441 2246999999999999999999999999772
Q ss_pred hCCCcHHHHHHHhcCC-CHHHHHHHHHHH
Q 004073 635 STPGLVSGLATVLDTG-ELIEQEQAVSCL 662 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~-s~~~~e~Av~~L 662 (775)
. ...++.|.+++.+. +..++..|+.+|
T Consensus 60 ~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 D-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp H-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 1 35789999999875 556688888876
No 111
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.61 E-value=0.027 Score=54.77 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=97.7
Q ss_pred ccccCchHHHHHhhcCCCC-----HHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC--ChHHHHHHHHHHHH
Q 004073 550 IGSSHAVPFLVELCKGKTE-----HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG--DPMWTEKSLAVLLN 622 (775)
Q Consensus 550 I~~~g~i~~LV~LL~~~~~-----~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~--~~~i~e~al~~L~n 622 (775)
+.+.||+..|++++.++.. ......++.|+..|-.++-.-...++.-.|...+.+++.. +..+...|+++|.+
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 3447899999999998832 3677889999999877666566667777888888877543 68889999999999
Q ss_pred HhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 623 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 623 La~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
++.+....-..+..+=.++.|+..|..+++.+|.+|++.+-+|....
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99988876666665678999999999999999999999999988643
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.49 E-value=0.013 Score=60.67 Aligned_cols=180 Identities=16% Similarity=0.094 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHHhhccC--CchhHHHHh--hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHH
Q 004073 485 RNSYAQEIGAMALFNLAVNN--NRNKELMLA--AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPF 558 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~--~~nk~~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~ 558 (775)
.|-..+..|+.-|..+..++ ......+.. ...+..++..+.+..+ ...|+.++..|+..-.....-.....+|.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 68888999999998887544 222333322 1455566666655443 25577777666654332221112468899
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC--
Q 004073 559 LVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-- 636 (775)
Q Consensus 559 LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-- 636 (775)
|++.+.++ +..+++.|..+|..++.+-.....+ .++.+...+.+.++.++..++..|..+.............
T Consensus 99 Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDS-KKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 99999998 8899999999999998754411121 1455666778889999999999998887654411111111
Q ss_pred --CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 637 --PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 637 --~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
...++.+...+.+.++.+|+.|-.+++.+...-
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 246788888899999999999999999987643
No 113
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.43 E-value=0.28 Score=53.79 Aligned_cols=185 Identities=19% Similarity=0.184 Sum_probs=128.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..++..+.+. +..++..|+..+..+. ..-+++.|..+|.+ .+..++..|+.+|..+- +
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d----~~~~vr~~a~~aLg~~~--~-- 103 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGELG-----------SEEAVPLLRELLSD----EDPRVRDAAADALGELG--D-- 103 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcC----CCHHHHHHHHHHHHccC--C--
Confidence 455666677766 7888888887754433 23568899999988 78889999998777762 1
Q ss_pred hhHHHHhhCcHHHHHHHhcc-CCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCH------------HH
Q 004073 507 NKELMLAAGVIPLLEKMISN-SNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH------------QC 571 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~------------~~ 571 (775)
..+++.|+..|.+ .+. +..|+.+|..+- ...++.+|+.++.+. .. ..
T Consensus 104 -------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~-~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 104 -------PEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDE-DSGSAAAALDAALLDV 165 (335)
T ss_pred -------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccc-hhhhhhhhccchHHHH
Confidence 2367888999985 443 466777776433 345589999999886 42 23
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCC
Q 004073 572 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE 651 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s 651 (775)
+..++.+|..+- ..-.++.|.+++.+....++..+..+|..+.... ...+..+...+...+
T Consensus 166 r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~ 226 (335)
T COG1413 166 RAAAAEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDES 226 (335)
T ss_pred HHHHHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCC
Confidence 444444444331 2236778888888887788888998888876644 245677888888888
Q ss_pred HHHHHHHHHHHHHhhcC
Q 004073 652 LIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~~ 668 (775)
..++..++..|..+-..
T Consensus 227 ~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 227 LEVRKAALLALGEIGDE 243 (335)
T ss_pred HHHHHHHHHHhcccCcc
Confidence 88888877777665443
No 114
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.41 E-value=0.057 Score=52.54 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=98.4
Q ss_pred HHHHHcCcHHHHHHhccCCC------hHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCC--CHHHHHHHHH
Q 004073 590 PNLLSAGIISGLQSLAVPGD------PMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVS 660 (775)
Q Consensus 590 ~~iv~aG~V~~Lv~LL~~~~------~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av~ 660 (775)
..++..||+..|+.++.++. ..+...++.++..|-.+.. +++.+- ..+|..++..+... ++.+.+.|++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~--~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS--DSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc--HHHHHHHHHHHccccccchHHHHHHH
Confidence 46788999999999998765 3666778999999988765 565443 36899999999853 5889999999
Q ss_pred HHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 661 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 661 ~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+|-++..+++.....+.++=-++.|+..+...++..+.+|..|+..|---
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 99999999877778888887899999999999999999999999766533
No 115
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.32 E-value=0.013 Score=50.76 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=65.9
Q ss_pred hHHHHHHh-chhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcc
Q 004073 471 VVALLRFL-ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK 547 (775)
Q Consensus 471 I~~Lv~lL-~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k 547 (775)
||.|++.| .+ .++.++..++.+|.++- ...++|.|+.++++++. +..|+.+|..+
T Consensus 1 i~~L~~~l~~~----~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------- 58 (88)
T PF13646_consen 1 IPALLQLLQND----PDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRI------- 58 (88)
T ss_dssp HHHHHHHHHTS----SSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-------
Confidence 68899988 44 79999999999998552 12469999999987765 46688888765
Q ss_pred ccccccCchHHHHHhhcCCCCHHHHHHHHHHHH
Q 004073 548 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 548 ~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
+...+++.|.+++.++.+..++..|+.+|.
T Consensus 59 ---~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ---GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 346789999999988746677899998874
No 116
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.32 E-value=0.11 Score=58.89 Aligned_cols=147 Identities=16% Similarity=0.057 Sum_probs=100.6
Q ss_pred HHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH
Q 004073 517 IPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS 594 (775)
Q Consensus 517 i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~ 594 (775)
+..|+..|...+. +..++.+|. .|+..++.+.|+.+|++. ++.++..++.++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg----------~i~~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------r~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALG----------WLGGRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------HR 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh----------cCCchHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------hc
Confidence 6777777776654 233444443 344567888999999888 88888888877766 12
Q ss_pred cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHH
Q 004073 595 AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQ 674 (775)
Q Consensus 595 aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~ 674 (775)
....+.|..+|.+.++.+...|+.+|..|-. ...++.|...+.+.++.++..|+..|..+-..
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~------ 208 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR------ 208 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH------
Confidence 3356678888888889999999999987643 35678888888889999999999988665331
Q ss_pred HHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 675 MVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 675 ~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
+++..|..+...........+..++.+.
T Consensus 209 -----~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 209 -----LAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred -----hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 2345666644444444444444455543
No 117
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.18 Score=58.10 Aligned_cols=264 Identities=14% Similarity=0.139 Sum_probs=165.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHH-HHHHHHHhhccCCchh
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEI-GAMALFNLAVNNNRNK 508 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~-A~~aL~nLs~~~~~nk 508 (775)
.+.+.+... ....|..++..+..+.++.. -..+.+.+++..|-..+.. ........ +..+.-.... +-
T Consensus 138 ~l~~ll~~~-~~~~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~d----k~~~~~re~~~~a~~~~~~----~L 206 (569)
T KOG1242|consen 138 LLLELLTST-KIAERAGAAYGLAGLVNGLG--IESLKEFGFLDNLSKAIID----KKSALNREAALLAFEAAQG----NL 206 (569)
T ss_pred HHHHHhccc-cHHHHhhhhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcc----cchhhcHHHHHHHHHHHHH----hc
Confidence 344455555 78899999999999998753 3346667888888888875 22222222 2111111111 11
Q ss_pred HHHHhhCcHHHHHHHhccCCh-----HHHHHHHHh-cccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 509 ELMLAAGVIPLLEKMISNSNS-----HGAATALYL-NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 509 ~~i~~~G~i~~Lv~lL~s~~~-----~~~AaaaL~-~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
....+.+.+|.+-.+|.+-.+ ++.|..+.. .+.+.+.+ +..-.+|+++.-+... ..+.+.+++..|..+
T Consensus 207 g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~----aVK~llpsll~~l~~~-kWrtK~aslellg~m 281 (569)
T KOG1242|consen 207 GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY----AVKLLLPSLLGSLLEA-KWRTKMASLELLGAM 281 (569)
T ss_pred CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc----hhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHH
Confidence 123466778888888865322 233322222 12222211 1123456666666665 789999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH--HHh----h---------------------
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE--EMN----S--------------------- 635 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~--~i~----~--------------------- 635 (775)
+....-.....-..+||.|.+.|.+..+.+++.+..+|..+++.-++-. .++ +
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTF 361 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence 8888888788888999999999999999999999999998876333222 000 0
Q ss_pred ----CCCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhcC--ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH-
Q 004073 636 ----TPGLVSGLATVLDT----GELIEQEQAVSCLFLLCNG--NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL- 704 (775)
Q Consensus 636 ----~~g~I~~Lv~lL~~----~s~~~~e~Av~~L~~Lc~~--~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL- 704 (775)
.+-.+..++.+|.+ .+...+..++.+.+|+|+- ++....-.+. -.+|.|-..+.+..|++|.-|...|
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 12345566666654 3556778889999999974 3322222211 2556666666667899999999888
Q ss_pred HHhHhc
Q 004073 705 MLFREQ 710 (775)
Q Consensus 705 ~~L~~~ 710 (775)
.++.+.
T Consensus 441 ~l~e~~ 446 (569)
T KOG1242|consen 441 ALLERL 446 (569)
T ss_pred HHHHHH
Confidence 444443
No 118
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0026 Score=66.54 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=45.3
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCC-Ccc
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC-LTP 334 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~-l~p 334 (775)
-.|+||+.-|.-||.++|+|.||--||+--...+..+||+|+.+++++. +.|
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 3699999999999999999999999999876667789999999997753 444
No 119
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.22 E-value=0.0045 Score=53.36 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=36.6
Q ss_pred CCccccccccccccC-ceec-CCCCccchHHHHHHHhc--CCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYD-PVII-ASGQTYERICIEKWLSD--GHSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~d-PV~~-~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l~ 328 (775)
+-+-.||.|...=.| |++. .|||.|-..||.+|++. .+.+||.||++..
T Consensus 30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 334456666555445 6555 89999999999999984 4679999999753
No 120
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.22 E-value=0.88 Score=50.50 Aligned_cols=231 Identities=11% Similarity=0.079 Sum_probs=160.0
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh-------hCcHHHHHHHhccCCh--HHHHHHHHhc
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-------AGVIPLLEKMISNSNS--HGAATALYLN 539 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-------~G~i~~Lv~lL~s~~~--~~~AaaaL~~ 539 (775)
-.+.+++.+++.- ...++....+..+-.+- +.+..+..+.. .-..+..+.+|..++. .+.+..++..
T Consensus 65 ~~v~~fi~LlS~~---~kdd~v~yvL~li~DmL-s~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 65 QYVKTFINLLSHI---DKDDTVQYVLTLIDDML-SEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSK 140 (442)
T ss_pred HHHHHHHHHhchh---hhHHHHHHHHHHHHHHH-hhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3566778888752 33445555555555553 24444444432 1246778888888776 3557788877
Q ss_pred ccccCCccccccccC-chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc-c-CCChHHHHHH
Q 004073 540 LSFLDDAKPIIGSSH-AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA-V-PGDPMWTEKS 616 (775)
Q Consensus 540 Ls~~~~~k~~I~~~g-~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL-~-~~~~~i~e~a 616 (775)
++.....+...++.. ....|-..+.+..+.+...-|+.+|.-+...++-|..++.+.++..|+..+ + ..+..++-..
T Consensus 141 la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs 220 (442)
T KOG2759|consen 141 LACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQS 220 (442)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence 777655554443333 234555666664478888999999999999999999999999999999977 3 2567888999
Q ss_pred HHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCh------HhHHHHHHCCCHHHHHHhh
Q 004073 617 LAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE------KCCQMVLQEGVIPALVSIS 689 (775)
Q Consensus 617 l~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~------~~~~~v~~~G~i~~Lv~Ll 689 (775)
+-.++.|.-++...+.+ ...+.|+.|+++++. .-.++..-+++++.|++...+ +....++..++.+.+-.|.
T Consensus 221 ifciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 221 IFCIWLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred HHHHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 99999999888777666 446999999999985 456777788899999997653 4456677777777666665
Q ss_pred hcC--ChHHHHHHHHHH
Q 004073 690 VNG--STRGRDKAQRLL 704 (775)
Q Consensus 690 ~~g--~~~~k~kA~~LL 704 (775)
..+ ++....--..|-
T Consensus 300 ~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hcCCCcHHHHHHHHHHH
Confidence 543 444444333333
No 121
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.17 E-value=0.0036 Score=66.46 Aligned_cols=54 Identities=13% Similarity=0.311 Sum_probs=43.4
Q ss_pred CCCccccccccccccC--c-ee-cCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004073 279 PPEELRCPISLQLMYD--P-VI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~d--P-V~-~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p 334 (775)
-...|.||||+..|.. + |. .+|||+|...+|..-- ....||+|++++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3568999999999954 2 33 3999999999999873 3567999999999877654
No 122
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0032 Score=68.32 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=40.2
Q ss_pred cccccccccccC--c-eecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYD--P-VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 283 f~CPIs~~~m~d--P-V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+.|-||+|-+.+ - +++||+|.|-..||..|+...+.+||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 899999998874 3 367999999999999999987788999998653
No 123
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.13 E-value=0.2 Score=54.92 Aligned_cols=180 Identities=24% Similarity=0.238 Sum_probs=120.7
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCc
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDA 546 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~ 546 (775)
-.++.++++|.+ .+..++..|+..|..+. ..-++|.|..+|...+.. ..|+.+|.
T Consensus 43 ~~~~~~~~~l~~----~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg-------- 99 (335)
T COG1413 43 EAADELLKLLED----EDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALG-------- 99 (335)
T ss_pred hhHHHHHHHHcC----CCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHH--------
Confidence 467888888887 67888888887755542 234788999999887763 33444332
Q ss_pred cccccccCchHHHHHhhcC-CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChH------------HH
Q 004073 547 KPIIGSSHAVPFLVELCKG-KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPM------------WT 613 (775)
Q Consensus 547 k~~I~~~g~i~~LV~LL~~-~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~------------i~ 613 (775)
.++...++++|+++|.+ . +..++..|..+|..+-. ..++.+|+.++.+.... ++
T Consensus 100 --~~~~~~a~~~li~~l~~d~-~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 100 --ELGDPEAVPPLVELLENDE-NEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred --ccCChhHHHHHHHHHHcCC-cHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 33345689999999994 6 99999999999998843 22488888888765422 22
Q ss_pred HHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCC
Q 004073 614 EKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS 693 (775)
Q Consensus 614 e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~ 693 (775)
..++..|..+ ..+..++.+...+......++..|+.+|..+...+ ..+.+.++..+.+..
T Consensus 167 ~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~ 226 (335)
T COG1413 167 AAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDES 226 (335)
T ss_pred HHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCC
Confidence 2233333222 23467889999999988999999999999888764 223334444444445
Q ss_pred hHHHHHHHHHH
Q 004073 694 TRGRDKAQRLL 704 (775)
Q Consensus 694 ~~~k~kA~~LL 704 (775)
..++..+...|
T Consensus 227 ~~vr~~~~~~l 237 (335)
T COG1413 227 LEVRKAALLAL 237 (335)
T ss_pred HHHHHHHHHHh
Confidence 55544444444
No 124
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.14 Score=58.36 Aligned_cols=230 Identities=11% Similarity=0.088 Sum_probs=151.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+...-|+.+|... +.++|.-+=..|..+.++= .+.-.-.+ ...++.|+.-+.+ .++.+|..|+.-|..+.. -
T Consensus 208 ~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~s----s~~~iq~~al~Wi~efV~-i 280 (675)
T KOG0212|consen 208 SLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQS----SEPEIQLKALTWIQEFVK-I 280 (675)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccC----CcHHHHHHHHHHHHHHhc-C
Confidence 3445677778776 7777755544444443320 01111112 4567788887877 799999999988888743 2
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChH-HHHHHH-----HhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNSH-GAATAL-----YLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~-~~Aaaa-----L~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
..+.....-+|++..+...+.....+ ..-++. |..+......+..|.-...+..|.+.+.+. ..+.+..++.-
T Consensus 281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~W 359 (675)
T KOG0212|consen 281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNW 359 (675)
T ss_pred CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHH
Confidence 33333334567777777777665442 111222 223333333343333234688888999888 89999999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~A 658 (775)
+..|-....|+.......+.+.|+.-|.+.+..+...++.+|+++|.++....- -.++..|+++......-....+
T Consensus 360 i~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~----~~fl~sLL~~f~e~~~~l~~Rg 435 (675)
T KOG0212|consen 360 IILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL----RKFLLSLLEMFKEDTKLLEVRG 435 (675)
T ss_pred HHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH----HHHHHHHHHHHhhhhHHHHhhh
Confidence 999988888887777788999999999998899999999999999998876522 1234455555555555566777
Q ss_pred HHHHHHhhc
Q 004073 659 VSCLFLLCN 667 (775)
Q Consensus 659 v~~L~~Lc~ 667 (775)
.-|+..||.
T Consensus 436 ~lIIRqlC~ 444 (675)
T KOG0212|consen 436 NLIIRQLCL 444 (675)
T ss_pred hHHHHHHHH
Confidence 777777774
No 125
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.31 Score=56.99 Aligned_cols=217 Identities=15% Similarity=0.172 Sum_probs=134.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
....+++..|.+. -+-+|.+|+..+..+.-. .+..|. .+|.|+.=|.. +|+.+|-.|+.+++.||..+
T Consensus 144 DLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeD----pDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 144 DLADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLED----PDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccC----CCchHHHHHHHHHHHHHhhC
Confidence 4556788889888 667888888777665543 333333 46888888887 89999999999999999877
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh-H--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHH-
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS-H--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY- 580 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~-~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~- 580 (775)
+.|-.. .-|.+.++|...+. + ..-.-+..+|+..+ ..+| ...+++|.+++.+..-....-.++.++.
T Consensus 213 PknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLg-KKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 213 PQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLG-KKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred Cccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccC---chhh-hhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 777544 34667777755432 2 33333334454432 2333 3467888888876522222222333222
Q ss_pred -HhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 581 -NLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 581 -nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
|++....+....+.. +|+.|-.++.+.++.++--.+-++..++... -..+..+ -..++..|...++.++-.|+
T Consensus 284 ~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktH--p~~Vqa~---kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTH--PKAVQAH---KDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred ehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhC--HHHHHHh---HHHHHHHhccCCchhHHHHH
Confidence 344444466666655 6777777777777777777777776665432 1222222 24456666666777777777
Q ss_pred HHHHHhhcC
Q 004073 660 SCLFLLCNG 668 (775)
Q Consensus 660 ~~L~~Lc~~ 668 (775)
..|+.+.+.
T Consensus 358 dLl~gmVsk 366 (877)
T KOG1059|consen 358 DLLYGMVSK 366 (877)
T ss_pred HHHHHHhhh
Confidence 777776653
No 126
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.05 E-value=0.0028 Score=70.28 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=43.7
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHh---c-CCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLS---D-GHSTCPKTQQKLPHL 330 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~---~-~~~~CP~t~~~l~~~ 330 (775)
..+..|-+|.+.-.||+...|.|+|||.||..|.. + .+-+||.|...|+-.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 35789999999999999999999999999999865 2 356899998887644
No 127
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0042 Score=64.89 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=46.2
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
|.|-||.+.|.+||+..|||+||..|-.+.++. ...|++|++.. +..+.+..-|..+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t-~g~~~~akeL~~~L 299 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT-HGSFNVAKELLVSL 299 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc-ccccchHHHHHHHH
Confidence 889999999999999999999999998888875 56899999875 44444444444333
No 128
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0032 Score=73.87 Aligned_cols=47 Identities=23% Similarity=0.619 Sum_probs=42.1
Q ss_pred CCccccccccccccC-----ceecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYD-----PVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 280 p~~f~CPIs~~~m~d-----PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
..+-.|+||.|.|.. |-.++|||.|...|+.+|+.. ..+||.|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 447799999999999 788999999999999999987 77999998743
No 129
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=3.7 Score=50.30 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCC-CCChHHHH----HcCcHHHHHHhcc-CCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHH
Q 004073 570 QCKLDALHALYNLSTI-PSNIPNLL----SAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 643 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~-~~nk~~iv----~aG~V~~Lv~LL~-~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~L 643 (775)
.-...++.||.||... ++-...+- =-|-.+.+..++. .+++.++..|+.++..+..+.+....+... +.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-NVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-hHHHHH
Confidence 3567799999999754 43222211 1366666666664 467788899999999999999988888875 777777
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHH-hhhcCChHHHHHHHHHHHHhHhc
Q 004073 644 ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 644 v~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~-Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+.+|. .-|.-++.++.+|++|++.. +......+.|++..+.. +..+.++..|..|+.||--|...
T Consensus 1819 L~lLH-S~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1819 LTLLH-SQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHh-cChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 77775 46888999999999999876 66777778887777764 55566788888889998777544
No 130
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.70 E-value=0.0093 Score=61.39 Aligned_cols=62 Identities=27% Similarity=0.307 Sum_probs=44.8
Q ss_pred CccccccccccccCceec-CCCCccchHHHHHHHhc-CCCCCCCCCCC--C--CCCCCcccHHHHHHH
Q 004073 281 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQK--L--PHLCLTPNYCVKGLI 342 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~CP~t~~~--l--~~~~l~pn~~l~~~i 342 (775)
-+++|||+......||+. .|||.|+|..|+..+.. -...||+-+-+ . ....+.+...++.-|
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kI 242 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKI 242 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHH
Confidence 368999999999999987 79999999999999864 24569995433 2 233444443444444
No 131
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.68 E-value=0.3 Score=58.64 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=154.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.++.++.+. +-+.|.-|...|-.-...+.-+-..=.+...+..|+++|.. .+.++|..|+.+|.-|+..-.+.+.
T Consensus 9 ~Llekmtss-DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D----~ngEVQnlAVKClg~lvsKvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSS-DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED----KNGEVQNLAVKCLGPLVSKVKEDQL 83 (1233)
T ss_pred HHHHHccCC-CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhhchHHHH
Confidence 677777777 78888888887766554432111111235678889999987 7899999999999999743222221
Q ss_pred HHHhhCcHHHHHHHhccCChH---HHHHHHHhcccccCCccccccccCchHHHHHhhcCC-----CCHHHHHHHHHHHHH
Q 004073 510 LMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-----TEHQCKLDALHALYN 581 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~~---~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~-----~~~~~k~~Al~aL~n 581 (775)
. . .+..|..-+-++..+ ..+.+.....+.............+++.+...|..+ ....++-.++..|..
T Consensus 84 e---~-~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d 159 (1233)
T KOG1824|consen 84 E---T-IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILAD 159 (1233)
T ss_pred H---H-HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Confidence 1 1 112222211222222 234444333333221111112233444444444322 123366666666665
Q ss_pred hcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHH
Q 004073 582 LSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAV 659 (775)
Q Consensus 582 Ls~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av 659 (775)
.-+.-+ --.. ...+.+..|+.-+.+....++.+++.+|..|+..- ++.... +.|..|++=|. +.++....--+
T Consensus 160 ~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~---~li~~Ll~~L~~~~q~~~~rt~I 234 (1233)
T KOG1824|consen 160 VLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYV---ELIEHLLKGLSNRTQMSATRTYI 234 (1233)
T ss_pred HHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHH---HHHHHHHhccCCCCchHHHHHHH
Confidence 543222 1111 44566777777777788889999999999998743 222222 34555555554 24555555566
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhh---hcCChHHHHHHHHHHHHhHhccCCC
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSIS---VNGSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll---~~g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
.+|..+|+.. .++---.-...+|.+.+.. ...+++.|++....|..|-...+.+
T Consensus 235 q~l~~i~r~a-g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 235 QCLAAICRQA-GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHh-cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 7778888654 1221111223677777777 7789999999999998876665554
No 132
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.6 Score=54.01 Aligned_cols=220 Identities=18% Similarity=0.091 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
...+..|+..+... +..+|+.....|..+..... .....-+.+.+.+++.. .+..-+..|...+..+. +
T Consensus 95 ~~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~~----~~~~~~~~aa~~~ag~v--~ 163 (569)
T KOG1242|consen 95 ISIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLTS----TKIAERAGAAYGLAGLV--N 163 (569)
T ss_pred hHHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhcc----ccHHHHhhhhHHHHHHH--c
Confidence 45667778888877 88999998888877764322 11223456777888876 67777888888888884 2
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhc---CCCCHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~---~~~~~~~k~~Al~a 578 (775)
...-..+.+.+.+..|...+..... ++.+.-+......+-. .-.+...++.|..+|. +. ...++.+|..+
T Consensus 164 g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 164 GLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDK-INKVREAAVEA 239 (569)
T ss_pred CcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhcc-chhhhHHHHHH
Confidence 3344555677888888888876543 3311111111111100 2233566666666664 33 45566655555
Q ss_pred HHHhcCCCCChHHHHHcCcHHH----HHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISG----LQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIE 654 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~----Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~ 654 (775)
...+-.. +.+++|+. ++.-+.+..=..+..++..|..++.+...+-.... +..||.|.+.|-+..+.+
T Consensus 240 ~kai~~~-------~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~ev 311 (569)
T KOG1242|consen 240 AKAIMRC-------LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEV 311 (569)
T ss_pred HHHHHHh-------cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHH
Confidence 5444211 22333333 33322222223346788999999998877777766 489999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004073 655 QEQAVSCLFLLCN 667 (775)
Q Consensus 655 ~e~Av~~L~~Lc~ 667 (775)
++.+..+|..+|+
T Consensus 312 r~a~~~~l~~~~s 324 (569)
T KOG1242|consen 312 RKAGIETLLKFGS 324 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 133
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.0086 Score=60.78 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=32.2
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHh
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLS 314 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~ 314 (775)
+-+.-+|.+|++.++|||+.+.||.|||.||..++-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 444459999999999999999999999999999875
No 134
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.4 Score=56.16 Aligned_cols=259 Identities=13% Similarity=0.132 Sum_probs=158.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+.+|+.+|..+ ++.+|-.|+..|+.||+.++.|.-.+ -|.+.++|... .|-=+...-+....+|+--.+
T Consensus 181 ~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttS---sNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 181 PCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTS---SNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred hhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhcc---CCCeehHHHHHHHhhccccCc
Confidence 5678899999888 99999999999999999999886554 47788888652 232233445566667754333
Q ss_pred chhHHHHhhCcHHHHHHHhccCChHH---HHHHHHh--ccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNSHG---AATALYL--NLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~~---~AaaaL~--~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
+-. .-.+|+|..++++..... .+.-++- +++.. .++-..| .-++..|-.++.+. ++-.+--++-|+
T Consensus 252 RLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fieds-DqNLKYlgLlam 323 (877)
T KOG1059|consen 252 RLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDS-DQNLKYLGLLAM 323 (877)
T ss_pred hhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcC-CccHHHHHHHHH
Confidence 322 237899999998876321 1111111 23222 1222222 12456666777777 888999999999
Q ss_pred HHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCC-HHHHHHH
Q 004073 580 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE-LIEQEQA 658 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s-~~~~e~A 658 (775)
+.+.-.+ ...|.+ --..++..|.+.+..++-.|+..|.-+++. ++-.+ .|..|+..+...+ ..-+..-
T Consensus 324 ~KI~ktH---p~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~e------IVk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 324 SKILKTH---PKAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSK-KNLME------IVKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHHhhhC---HHHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHH------HHHHHHHHHHhccchhHHHHH
Confidence 8887432 233332 123456778899999999999999988763 23333 3455665554333 3667777
Q ss_pred HHHHHHhhcCChHhHHHHHHCC-CHHHHHHhhhc-CChHHHHHHHHHHHHhHhccCCC
Q 004073 659 VSCLFLLCNGNEKCCQMVLQEG-VIPALVSISVN-GSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 659 v~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
+.-+..+|+.+ +-+-+.+-. .+..|++|..- |+..+..-|-.++...-+.+.-+
T Consensus 393 l~~II~iCS~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR 448 (877)
T KOG1059|consen 393 LTRIISICSQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIR 448 (877)
T ss_pred HHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhh
Confidence 77778888765 222222222 34455555443 34555555555555544444333
No 135
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=0.33 Score=58.92 Aligned_cols=235 Identities=14% Similarity=0.021 Sum_probs=151.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHH--HHHHHHhhcc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIG--AMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A--~~aL~nLs~~ 503 (775)
++++-.++-|.+ .--|..|+.-|..+..-++=.-..-..-|+.|-.++||.+ .-.+++-.- +|+ .-||.
T Consensus 472 eQLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS----~a~ELrpiLVFIWA-KILAv- 542 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS----SARELRPILVFIWA-KILAV- 542 (1387)
T ss_pred HhcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc----chHhhhhhHHHHHH-HHHhc-
Confidence 444444554443 2345556666665555444333334457999999999998 333333222 222 22444
Q ss_pred CCchhHHHHhhCcHHHHHHHhccCCh-----HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHH
Q 004073 504 NNRNKELMLAAGVIPLLEKMISNSNS-----HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH 577 (775)
Q Consensus 504 ~~~nk~~i~~~G~i~~Lv~lL~s~~~-----~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~ 577 (775)
++.....+++.++-...+.+|..+.. +..|+-+|..+..+ .-.+..-.+.+.|..-+..|.++..+-.+.-++-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 46677778888777778888876321 23344445444433 2233344445677777788887535778888889
Q ss_pred HHHHhcCC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-----cccHHHH---h-------hCCCcHH
Q 004073 578 ALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-----AAGKEEM---N-------STPGLVS 641 (775)
Q Consensus 578 aL~nLs~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-----~e~~~~i---~-------~~~g~I~ 641 (775)
+|..|-.+ +++|-.=++.++...|+.+|.+.-+.++..|+-+|..+-++ ++....+ + ..+..|.
T Consensus 623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 99998754 45777777899999999999999999999999999998774 2221111 0 0123333
Q ss_pred ----HHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 642 ----GLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 642 ----~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
.++.+++.+++-++...+-+|.....+.
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 7888888999999888888887776654
No 136
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.56 E-value=0.048 Score=49.15 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh
Q 004073 444 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 513 (775)
Q Consensus 444 q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~ 513 (775)
+...++.|.+++..+..++..+.+.|+||.++..-.- +..+|-+++.|+.+|.||...+.+|+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i--D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI--DDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC--CcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5567888999999999999999999999999987643 4478999999999999999888888887664
No 137
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.7 Score=49.56 Aligned_cols=243 Identities=16% Similarity=0.116 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPL 519 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~ 519 (775)
+.-.|..++.-|-.+..-+++.-...-..|.+..|..-|+.. .|.-+..+.+.....|+. .+..+..+.+.|.|..
T Consensus 184 ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDtLVianciElvteLae-teHgreflaQeglIdl 259 (524)
T KOG4413|consen 184 NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDTLVIANCIELVTELAE-TEHGREFLAQEGLIDL 259 (524)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHH
Confidence 445666777777777777777666667789888888877753 566677777777788874 5668888889999999
Q ss_pred HHHHhccCCh--HHH--HHH----HHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCCh
Q 004073 520 LEKMISNSNS--HGA--ATA----LYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI 589 (775)
Q Consensus 520 Lv~lL~s~~~--~~~--Aaa----aL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk 589 (775)
|-.++...++ -+. ++- .+.+++..+..-..+.+ .-+|..-.+++... ++...+.|+.+|..|-++.+.+
T Consensus 260 icnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGa 338 (524)
T KOG4413|consen 260 ICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGA 338 (524)
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchh
Confidence 9999976553 122 222 12233333322223322 23455666777777 8999999999999999999999
Q ss_pred HHHHHcC--cHHHHHH-hccCCChHHHHHHHHHHHHHhCC--------cccHHHH------hhC------CCcHHHHHHH
Q 004073 590 PNLLSAG--IISGLQS-LAVPGDPMWTEKSLAVLLNLAAS--------AAGKEEM------NST------PGLVSGLATV 646 (775)
Q Consensus 590 ~~iv~aG--~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~--------~e~~~~i------~~~------~g~I~~Lv~l 646 (775)
..+.+.| +...|+. ........-++.++.+|.++++- .+|+... .+. -.-...+..+
T Consensus 339 dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgi 418 (524)
T KOG4413|consen 339 DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGI 418 (524)
T ss_pred HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHH
Confidence 8888877 3444444 44333333357788888888762 1233211 110 0223455667
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHH
Q 004073 647 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 687 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~ 687 (775)
++...|++.-.+..++-.|+...=......-.+|.|.....
T Consensus 419 lqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 419 LQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence 77789999999999999998876444555555666655543
No 138
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.46 Score=55.17 Aligned_cols=275 Identities=16% Similarity=0.120 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHH--hhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHh
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNL 500 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~--i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nL 500 (775)
.+....|...|.+. +...+..|..+|..++.++.+.-.. .-+ .-.||.++++.+. .++.++..|+.++-.+
T Consensus 127 pelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h----~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 127 PELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH----PSPKIRSHAVGCVNQF 201 (885)
T ss_pred hhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC----CChhHHHHHHhhhhhe
Confidence 57788888888887 7788889999999999887654322 111 2467889999988 7899999999888776
Q ss_pred hccCCchhHHHHhhC-cHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHH
Q 004073 501 AVNNNRNKELMLAAG-VIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH 577 (775)
Q Consensus 501 s~~~~~nk~~i~~~G-~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~ 577 (775)
.. .++...+..-+ .+..|..+-...+. +.+.+.++..|-...-.|..=--.+.|+-++..-++. +..+.-.|+.
T Consensus 202 i~--~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACE 278 (885)
T KOG2023|consen 202 II--IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACE 278 (885)
T ss_pred ee--cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHH
Confidence 44 33455555433 55555555433333 4556666544443322221111147788888888877 8889999999
Q ss_pred HHHHhcCCCCChHHHHH--cCcHHHHHHhcc-CC-Ch-------------------------------------------
Q 004073 578 ALYNLSTIPSNIPNLLS--AGIISGLQSLAV-PG-DP------------------------------------------- 610 (775)
Q Consensus 578 aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~-~~-~~------------------------------------------- 610 (775)
-...++..+-.+..+.. ...||.|+.=+. +. +.
T Consensus 279 Fwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 279 FWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence 99999988855555544 467787776331 10 00
Q ss_pred -----------HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC
Q 004073 611 -----------MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 611 -----------~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 679 (775)
.++..++++|.-|+.. -+..++. -..|.|-+.|.+..=.+||.++-+|.+++.+. -+-+...
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~ 431 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPH 431 (885)
T ss_pred ccccccccccccHhhccHHHHHHHHHh--hHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccc
Confidence 1233344444444321 1122222 12333333444444568999999999998653 1222222
Q ss_pred --CCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCCC
Q 004073 680 --GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 680 --G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
..||.|+.++.+..+-+|.-.++.|..+..+--.+
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~ 468 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD 468 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC
Confidence 26888889999999999999999888877664443
No 139
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.017 Score=59.76 Aligned_cols=50 Identities=24% Similarity=0.431 Sum_probs=42.4
Q ss_pred CCCccccccccccccCceecC-CCCccchHHHHHHHh-cCCCCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLS-DGHSTCPKTQQKLP 328 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~-~~~~~CP~t~~~l~ 328 (775)
--.+-.||+|++.-+-|.++. |||.||--||.+-+. ....+||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 346789999999999999885 999999999999765 34679999997754
No 140
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.77 Score=49.26 Aligned_cols=249 Identities=14% Similarity=0.154 Sum_probs=158.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhhH----HhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARV----FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 431 Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~----~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
|-..|... +..++.-++..+.-+..+.+.|-. .++.+|..+.++..+.. +|..+-..|...|..++. ...
T Consensus 87 LQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg----eddeVAkAAiesikrial-fpa 160 (524)
T KOG4413|consen 87 LQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG----EDDEVAKAAIESIKRIAL-FPA 160 (524)
T ss_pred HHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC----CcHHHHHHHHHHHHHHHh-cHH
Confidence 33345555 777888889888888887764432 25578999999999887 788888899999988875 455
Q ss_pred hhHHHHhhCcHHHHHHH--hccCCh--HHHHHHHHhcc-cccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 507 NKELMLAAGVIPLLEKM--ISNSNS--HGAATALYLNL-SFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~l--L~s~~~--~~~AaaaL~~L-s~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
.-..+.....+..+-.. -...++ +......+..+ |..++.......+|.+..|..=|+...+.-++.+++...+.
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 55555555544433221 111221 23334443333 33334444444578777777666643377788899999999
Q ss_pred hcCCCCChHHHHHcCcHHHHHHhccC--CChHHHHHHHHHHHHHhCC----cccHHHHhhC-CCcHHHHHHHhcCCCHHH
Q 004073 582 LSTIPSNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAAS----AAGKEEMNST-PGLVSGLATVLDTGELIE 654 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~LL~~--~~~~i~e~al~~L~nLa~~----~e~~~~i~~~-~g~I~~Lv~lL~~~s~~~ 654 (775)
|+..+-.+..+.+.|.|+.+..++.. .++--+-.++.....+-+. .-.-+++++. .-+|....+++...+|..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 99888889999999999999998753 2332223344443333321 1112222221 123455566777889999
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHHCC--CHHHHH
Q 004073 655 QEQAVSCLFLLCNGNEKCCQMVLQEG--VIPALV 686 (775)
Q Consensus 655 ~e~Av~~L~~Lc~~~~~~~~~v~~~G--~i~~Lv 686 (775)
++.|+.+|..|.++. +..+.++..| ....|+
T Consensus 321 ieaAiDalGilGSnt-eGadlllkTgppaaehll 353 (524)
T KOG4413|consen 321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLL 353 (524)
T ss_pred HHHHHHHHHhccCCc-chhHHHhccCChHHHHHH
Confidence 999999999998876 5677777776 344444
No 141
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=2.1 Score=51.09 Aligned_cols=227 Identities=19% Similarity=0.153 Sum_probs=141.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc-----------CCCHHHHHHHHHHHH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-----------ERNSYAQEIGAMALF 498 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~-----------~~d~~~qe~A~~aL~ 498 (775)
.+-..|.+. +..+-..++.-+..+++.++++-....+ .++.||..|+.-.. -.||-+|...+..|.
T Consensus 183 ~~~~lL~ek-~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr 259 (866)
T KOG1062|consen 183 AFRKLLCEK-HHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR 259 (866)
T ss_pred HHHHHHhhc-CCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH
Confidence 334445544 6667777788888888887766555544 66777777754211 257889999998888
Q ss_pred HhhccCCchhHHHHh--------------------hCcHHHHHHHhccCChHHHHHHHHhccc-ccCCcccccccc----
Q 004073 499 NLAVNNNRNKELMLA--------------------AGVIPLLEKMISNSNSHGAATALYLNLS-FLDDAKPIIGSS---- 553 (775)
Q Consensus 499 nLs~~~~~nk~~i~~--------------------~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls-~~~~~k~~I~~~---- 553 (775)
-|-.++.+....|-+ -..+..+..+...+.-++.|+-+|..+- ..+.|-..++-.
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 886544433333321 0123334444433434566777775433 333443333311
Q ss_pred ------Cch----HHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 004073 554 ------HAV----PFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623 (775)
Q Consensus 554 ------g~i----~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL 623 (775)
.++ ..+++.|++. +..+++.|+..++.| .+..|...|++ .|+++|...+...+..++.-+..+
T Consensus 340 ~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~l-vn~~Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 340 VVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYAL-VNESNVRVMVK-----ELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred hhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH-hccccHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHH
Confidence 122 2567788887 999999999999988 45556665554 478878777777888888888888
Q ss_pred hCC--cccHH------HHhh------CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 624 AAS--AAGKE------EMNS------TPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 624 a~~--~e~~~------~i~~------~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
+.. ++.+= .+.. +...+..++.++..+.++..+.++.-|+.-.
T Consensus 413 aEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~ 469 (866)
T KOG1062|consen 413 AEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLAL 469 (866)
T ss_pred HHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 762 33221 1111 3467889999998887777777777666543
No 142
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.0079 Score=63.67 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=46.0
Q ss_pred CCCCCCCccccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 275 QMPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
..+.+|+.=.||||++--.+|-++. +|.+||-.||-++.. .+..||+|+.|..-
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 3445678889999999999998885 599999999999998 48899999988643
No 143
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.016 Score=60.71 Aligned_cols=47 Identities=21% Similarity=0.651 Sum_probs=38.9
Q ss_pred ccccccccccc--Cce-ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMY--DPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 283 f~CPIs~~~m~--dPV-~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.-|-||++=+. |-+ ++||.|.|-+.||++|+......||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999987653 444 579999999999999999778899999987754
No 144
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.00 E-value=0.029 Score=44.36 Aligned_cols=55 Identities=18% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 004073 569 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL 623 (775)
+.++..|+++|.+++........-....+++.|+.+|.+++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887666655556678999999999988889999999999875
No 145
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.02 Score=58.27 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=46.9
Q ss_pred CccccccccccccCce----ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 281 EELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
..|.||+|.+.+++-+ +-+|||+++..|.++.+. +...||+|+.++...++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 6799999999998864 348999999999999886 46799999999999888874
No 146
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.88 E-value=0.0094 Score=64.74 Aligned_cols=34 Identities=26% Similarity=0.647 Sum_probs=30.6
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHH
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWL 313 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~ 313 (775)
-+++.||||...++||+|++|||+.||.|-..-+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 3689999999999999999999999999977544
No 147
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.80 E-value=0.75 Score=47.62 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=120.5
Q ss_pred HHHHHHHhcccccCCccccccccCchHHHHHhhc----CCCCHHHHHHHHHHHHHhcCCCC--ChHHHHHcCcHHHHHHh
Q 004073 531 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----GKTEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSL 604 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~----~~~~~~~k~~Al~aL~nLs~~~~--nk~~iv~aG~V~~Lv~L 604 (775)
-+|.++|.-++++++.|..+.....---|-..|. +...+-.+-.++++|..|..+++ ....+...++||..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 5677777778888888887775443223333332 33345678889999999986554 56677789999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCC---cH----HHH-HHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004073 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPG---LV----SGL-ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g---~I----~~L-v~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
+..|+..-+..|..++..+-.++.|-.-+..+.. .| ..+ ..+.+.++++.-.+++++...||.+. ..+..+
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-rar~aL 255 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-RARAAL 255 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-HHHHHH
Confidence 9999888888899999999888888776655321 12 222 22334689999999999999998765 444444
Q ss_pred HHC---CCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 677 LQE---GVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 677 ~~~---G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
... +.-..-...+-..++..|+--+.++.++.
T Consensus 256 ~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 256 RSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 332 22222223334456677777777777765
No 148
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=1.3 Score=50.66 Aligned_cols=275 Identities=18% Similarity=0.167 Sum_probs=169.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhH-HhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARV-FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~-~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+-+.+.++..+ +....+.+++-+-.+.++-..-+. .+ -++.++.+|+......++.++..-+.-|..|-. .
T Consensus 124 n~iFdvL~klsaD-sd~~V~~~aeLLdRLikdIVte~~~tF----sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~ 197 (675)
T KOG0212|consen 124 NEIFDVLCKLSAD-SDQNVRGGAELLDRLIKDIVTESASTF----SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-V 197 (675)
T ss_pred HHHHHHHHHHhcC-CccccccHHHHHHHHHHHhcccccccc----CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-C
Confidence 4455666777665 334444556666555554211111 12 234444444433323678887777776666621 2
Q ss_pred CchhHHHHh--hCcHHHHHHHhccCCh--HHHHHHHHhc-ccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 505 NRNKELMLA--AGVIPLLEKMISNSNS--HGAATALYLN-LSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL~~-Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
+ ... |+. ...++.|..+|...+. +..+-.+|.+ |.... ++....+ ...++.||.-+.+. ++..+..|+.-
T Consensus 198 P-~~~-m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~-s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~W 273 (675)
T KOG0212|consen 198 P-DLE-MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR-SSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTW 273 (675)
T ss_pred C-cHH-HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-cCccccCcccchhhccccccCC-cHHHHHHHHHH
Confidence 2 222 333 4578888888876664 2223333322 22211 2222223 46788999999888 89999999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccCCCh-HHHHHHHH---HHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP-MWTEKSLA---VLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIE 654 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~-~i~e~al~---~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~ 654 (775)
|.....-.++....--+|++..++..+.+.+. .+++.+.. .|..+++.+.....+ +-...|..|.+.+.+.....
T Consensus 274 i~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d~~~ii~vl~~~l~~~~~~t 352 (675)
T KOG0212|consen 274 IQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-DYGSIIEVLTKYLSDDREET 352 (675)
T ss_pred HHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-chHHHHHHHHHHhhcchHHH
Confidence 99988777776666678899999998876544 34444432 355566666555543 32356777888888888888
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 655 QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 655 ~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
+-.++.-+..|-+.-+ +.-.+......+.|+.-+.+.++.+-..+..+|..+....+
T Consensus 353 ri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 353 RIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 8877776666655432 23334445688888888888888888888888877765433
No 149
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.70 E-value=0.14 Score=51.78 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHc----------------CcHHHHHHhccC------CChHHHHHHHHHHHHHhC
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSA----------------GIISGLQSLAVP------GDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~a----------------G~V~~Lv~LL~~------~~~~i~e~al~~L~nLa~ 625 (775)
+......++..|.||+..++.+..++.. .++..|++++.. ....-.+..+.+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3446677888899998887777766542 367778886644 123345789999999999
Q ss_pred CcccHHHHhhCC-Cc--HHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC--CCHHHHHHhhh
Q 004073 626 SAAGKEEMNSTP-GL--VSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE--GVIPALVSISV 690 (775)
Q Consensus 626 ~~e~~~~i~~~~-g~--I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--G~i~~Lv~Ll~ 690 (775)
.++||..++... +. +..|+..+.+.+..-|.-+++++-|+|-....+...+-.. +++|.|+.-+.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999998743 33 6677777777788889999999999998765554444433 57777764444
No 150
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=0.72 Score=56.10 Aligned_cols=200 Identities=14% Similarity=0.092 Sum_probs=136.4
Q ss_pred hHHHHhhCcHHHHHHHhccCCh-HHHHHHHHh--cccccCCccccccccCchHHHHHhhcC-C-CCHHHHHHHHHHHHHh
Q 004073 508 KELMLAAGVIPLLEKMISNSNS-HGAATALYL--NLSFLDDAKPIIGSSHAVPFLVELCKG-K-TEHQCKLDALHALYNL 582 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~--~Ls~~~~~k~~I~~~g~i~~LV~LL~~-~-~~~~~k~~Al~aL~nL 582 (775)
...-..-|++|-.+++|++... -...+..+. -|+.++.++.-+...++-.-.+..|.. . .+++-+..|+-+|..+
T Consensus 505 V~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAvi 584 (1387)
T KOG1517|consen 505 VDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVI 584 (1387)
T ss_pred hhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHH
Confidence 3334567999999999998764 233444443 467777777766665544445555554 2 3567788888889888
Q ss_pred cCCC-CChHHHHHcCcHHHHHHhccCC-ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004073 583 STIP-SNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 583 s~~~-~nk~~iv~aG~V~~Lv~LL~~~-~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
+.+- -.+....+.+.|..-++.|.++ .+-++.=++-.|..|-.+-+...-.....++...|..+|....|+++..|+-
T Consensus 585 v~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVF 664 (1387)
T KOG1517|consen 585 VRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVF 664 (1387)
T ss_pred HcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHH
Confidence 8654 4677778889999888888875 4555566677777776665544444444588999999999999999999999
Q ss_pred HHHHhhcCC----hHhHHHH-----------HHCCCHH----HHHHhhhcCChHHHHHHHHHHHHh
Q 004073 661 CLFLLCNGN----EKCCQMV-----------LQEGVIP----ALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 661 ~L~~Lc~~~----~~~~~~v-----------~~~G~i~----~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
+|..+-.+. ++....+ .-+..+. .|+.+...|++-++...+-.|..+
T Consensus 665 ALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 665 ALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred HHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 998887642 2222221 1122233 667788889998887766555444
No 151
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.66 E-value=2.1 Score=49.14 Aligned_cols=265 Identities=16% Similarity=0.075 Sum_probs=135.6
Q ss_pred hhHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004073 425 FERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 425 ~~~i~~Ll~-~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
...+.+|+. .|++. -.-++.++++.+..++..+- -.... .-+|..|-.+|++ .....+-.|+..|-.|+..
T Consensus 262 ~~q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s----~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 262 LLQLRPFLNSWLSDK-FEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKS----TRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhc----chHHHHHHHHHHHHHHHhh
Confidence 345666666 45443 56789999999999886641 01111 1345556666666 7888999999999988853
Q ss_pred CCc-------hhHHHH-hhC---cHHHHHHHhccCChH--HHHHHHHhcccc--cCCccccccc-------------cCc
Q 004073 504 NNR-------NKELML-AAG---VIPLLEKMISNSNSH--GAATALYLNLSF--LDDAKPIIGS-------------SHA 555 (775)
Q Consensus 504 ~~~-------nk~~i~-~~G---~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~--~~~~k~~I~~-------------~g~ 555 (775)
.++ +...++ +.+ ..-.+..+|+.|... ..-+..+-++.. .|..|..+.+ .-.
T Consensus 334 ~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 334 YPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred CCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 332 122222 111 344566667766542 122222222221 1233333221 001
Q ss_pred hHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHH
Q 004073 556 VPFLVELC-KGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 633 (775)
Q Consensus 556 i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i 633 (775)
+..|...| +.| ..+.++.+..||.....+. +.|.++ +..|..++.+..-. +-++.+|..|-.. |-.+-
T Consensus 414 l~FL~~~L~~eG-g~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDcey~--~I~vrIL~iLG~E--gP~a~ 483 (898)
T COG5240 414 LDFLGSSLLQEG-GLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCEYH--QITVRILGILGRE--GPRAK 483 (898)
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcchh--HHHHHHHHHhccc--CCCCC
Confidence 22333333 233 5566666666666655433 444443 33455555544332 3444444444321 10000
Q ss_pred hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 634 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 634 ~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
- -...|..+..-+--.+.-++..|+.+|...+-+-. ..+....+...|-..+.+.++++|+.|.-+|+.++..+
T Consensus 484 ~-P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 484 T-PGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred C-cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 0 00122333333323455678888888855443210 01112223344557788899999999999999998543
No 152
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.47 E-value=0.022 Score=62.79 Aligned_cols=45 Identities=24% Similarity=0.575 Sum_probs=37.6
Q ss_pred CccccccccccccCce----ecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+--+||||+|-|-+-| ++.|.|+|--.|+.+|+.. +||+||--..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 4459999999998887 4689999999999999754 9999985443
No 153
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.03 Score=60.03 Aligned_cols=47 Identities=23% Similarity=0.673 Sum_probs=39.7
Q ss_pred CCccccccccccccCc-------------eecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDP-------------VIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP-------------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
-.+-.|-||++-|-.| =-++|||.+--+|+..|... ..|||.|+.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 3577899999875433 68999999999999999986 77999999985
No 154
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.30 E-value=0.59 Score=55.54 Aligned_cols=245 Identities=14% Similarity=0.086 Sum_probs=152.4
Q ss_pred HHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHH-HhhccCCchhHHHHhhCcHHHHHHHhccCC
Q 004073 450 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF-NLAVNNNRNKELMLAAGVIPLLEKMISNSN 528 (775)
Q Consensus 450 ~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~-nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~ 528 (775)
....++.....-|...+..|+...|+++... ..+.....+..+|. .++. +.++. ..+++++...+++..
T Consensus 485 ~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f--~~~~~----~~v~~~~~s~~~~d~ 554 (748)
T KOG4151|consen 485 KNEYLAAKEKYERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDF--PGERS----YEVVKPLDSALHNDE 554 (748)
T ss_pred HHHHHhhhhHHhcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCC--CCCch----hhhhhhhcchhhhhH
Confidence 3444554445566678889999999999887 45566666666665 3322 22221 245666666665443
Q ss_pred h-HH--HHHHHHhcccccCC-ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHH-H-cCcHHHHH
Q 004073 529 S-HG--AATALYLNLSFLDD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLL-S-AGIISGLQ 602 (775)
Q Consensus 529 ~-~~--~AaaaL~~Ls~~~~-~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv-~-aG~V~~Lv 602 (775)
. .+ .++-++.||+..++ .|..|...-+++.+-.++... ++-.+..++..+.||..++.--.+.+ + ...++...
T Consensus 555 ~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~ 633 (748)
T KOG4151|consen 555 KGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWN 633 (748)
T ss_pred HHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHH
Confidence 2 22 37778888887654 455566555555555556666 89999999999999987776433333 3 33555555
Q ss_pred HhccCCChHHHHHHHHHHHHHhCCcccHHH-HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCC
Q 004073 603 SLAVPGDPMWTEKSLAVLLNLAASAAGKEE-MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 681 (775)
Q Consensus 603 ~LL~~~~~~i~e~al~~L~nLa~~~e~~~~-i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 681 (775)
..+........-.+++++..+....++... +...-..-..++.++.++++.+|...+.+.+++.....+....+.....
T Consensus 634 ~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~ 713 (748)
T KOG4151|consen 634 LNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEV 713 (748)
T ss_pred HHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchH
Confidence 555444444444555566645444333332 3333345677888888999999999999888877666566666766677
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHH
Q 004073 682 IPALVSISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 682 i~~Lv~Ll~~g~~~~k~kA~~LL~ 705 (775)
++.+..+........++.|..-|.
T Consensus 714 ~~~l~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 714 MELLSGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHH
Confidence 777765555444444444444443
No 155
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.27 E-value=2.4 Score=51.82 Aligned_cols=242 Identities=16% Similarity=0.078 Sum_probs=134.9
Q ss_pred HhhccCchHHHHHHhchhccC-CCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhc----cCC----h--HHH
Q 004073 464 FTGANGFVVALLRFLESAVCE-RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMIS----NSN----S--HGA 532 (775)
Q Consensus 464 ~i~~~G~I~~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~----s~~----~--~~~ 532 (775)
.+.+.|++..|+.+|.+-.+. .+.......+..|... ..-..||..+++.|+++.|+..|. .+. . .+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c-~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYC-CKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHH-HhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 456789999999999864321 2223333344444444 457889999999999999999985 222 1 233
Q ss_pred HHHHHhccccc---CCcc---cccccc-------CchHHHHHhhcCC---CCHHHHHHHHHHHHHhcCCCCChHHHHHcC
Q 004073 533 ATALYLNLSFL---DDAK---PIIGSS-------HAVPFLVELCKGK---TEHQCKLDALHALYNLSTIPSNIPNLLSAG 596 (775)
Q Consensus 533 AaaaL~~Ls~~---~~~k---~~I~~~-------g~i~~LV~LL~~~---~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG 596 (775)
-..++..|... +... ...... .-+..|++.+.+. .++.+....+.+|-+|+.....+..++-.-
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 33333322211 1111 111111 2366777777654 368899999999999987776554433211
Q ss_pred cHHHHHHh--ccC---CCh-HHHHHHHHHHHHHhCCcc---cHHHHhhCCCcHHHHHHHhcC--------CCHHHHH---
Q 004073 597 IISGLQSL--AVP---GDP-MWTEKSLAVLLNLAASAA---GKEEMNSTPGLVSGLATVLDT--------GELIEQE--- 656 (775)
Q Consensus 597 ~V~~Lv~L--L~~---~~~-~i~e~al~~L~nLa~~~e---~~~~i~~~~g~I~~Lv~lL~~--------~s~~~~e--- 656 (775)
.-+.| ++ +.. .+. -..+..+.+..++-.+.. -|..|+.. |.+...+++|.. .+++.++
T Consensus 271 F~p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~-GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 FKPYL-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILES-GIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHHhc-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-hHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 11111 21 111 111 222333333444433332 34566764 999988888862 4566655
Q ss_pred -----HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHHHhHh
Q 004073 657 -----QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 657 -----~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~ 709 (775)
.++.+|..||.+. ...+.++..++++.|-.|=. .++..+-.-|-.+|..|++
T Consensus 349 ~psLp~iL~lL~GLa~gh-~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGH-EPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 4788999999877 34555566767755543322 1234444455555555544
No 156
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.08 E-value=0.43 Score=51.00 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHH-HhhCcHHHHHHHhccCC--h--HHHHHHHHhcccccCCccccccc-cCchHH
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELM-LAAGVIPLLEKMISNSN--S--HGAATALYLNLSFLDDAKPIIGS-SHAVPF 558 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i-~~~G~i~~Lv~lL~s~~--~--~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~ 558 (775)
-++.++.-|+.+|.++.. ..+.|..+ ++...-..++.+|++.- . +-+..-++..|+...+...-|.. ...|.-
T Consensus 161 i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 455677888999999976 44444443 44556677888887633 2 23455556666666655544443 467888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCC--CCChHHHHHcCcHHHHHHhccCC---ChHHHHHH---HHHHHH----Hh--
Q 004073 559 LVELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQSLAVPG---DPMWTEKS---LAVLLN----LA-- 624 (775)
Q Consensus 559 LV~LL~~~~~~~~k~~Al~aL~nLs~~--~~nk~~iv~aG~V~~Lv~LL~~~---~~~i~e~a---l~~L~n----La-- 624 (775)
|+.+++......+.+.++.++.|++.- .+....+.-.|-+.+-+++|..+ +..++... -.+|.+ ||
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 888888765677888999999999862 24555666677666667755432 22222211 111111 11
Q ss_pred -------------CCcc---------cHHHHh-hCCCcHHHHHHHhcCCCHH-HHHHHHHHHHHhhcCChHhHHHHHHCC
Q 004073 625 -------------ASAA---------GKEEMN-STPGLVSGLATVLDTGELI-EQEQAVSCLFLLCNGNEKCCQMVLQEG 680 (775)
Q Consensus 625 -------------~~~e---------~~~~i~-~~~g~I~~Lv~lL~~~s~~-~~e~Av~~L~~Lc~~~~~~~~~v~~~G 680 (775)
-++. +...+. +....+..|.++++...+. .-.-|+.=+.++.+..|+....+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 1111 111221 2234567788888866554 445566667777777788888999999
Q ss_pred CHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 681 VIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 681 ~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+=..++.|+.+.++++|-.|.+.++.+-.
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999887653
No 157
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=93.96 E-value=0.26 Score=44.49 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCChHhHHHHHHC
Q 004073 612 WTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 612 i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 679 (775)
++...+.+|+|||- ++..+..+... |+|+.++..-. ..+|-.+|.|+.++.+||.+++++...+.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 35678899999987 45667777775 77999988754 5789999999999999999998887777654
No 158
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.95 E-value=0.37 Score=46.59 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=67.5
Q ss_pred cccccchHHHHHhhHHHHHHHHHhhccCccccCCC----ChhhHHHHHHHHHHHHHHHHHHhhccCCCceeehhhchHHH
Q 004073 12 AASDAKLHGDMCKKLSALYCKILSVFPSLEASRPR----SKSGIQALCSLHIALEKAKNILHHCSECSKLYLAITGDSVL 87 (775)
Q Consensus 12 ~~~~~~~~~~~c~~l~~~~rri~ll~p~lEe~r~~----~~s~~~~l~~L~~~l~kak~Ll~~c~~~Sklyl~~~~~~i~ 87 (775)
+.+.....+..+.++..++.+| .|.++|+... +..-..-++.|...|++|+.|++.|++.++ |=++.-....
T Consensus 25 ~~~k~~~fk~~l~~L~sTl~~i---~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r-~n~~kk~~y~ 100 (147)
T PF05659_consen 25 ASKKSLSFKSILKRLESTLESI---IPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRR-WNLYKKPRYA 100 (147)
T ss_pred HHHHHHhhhhHHHHHHHHHHHh---hhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccH-HHHHhhHhHH
Confidence 3444445566666665555555 9999999632 222267789999999999999999998864 4445666677
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHh
Q 004073 88 LKFEKARSALAESLRRVED-IVPQSIGCQILEIVNELE 124 (775)
Q Consensus 88 ~~f~~~~~~l~~~L~~~~~-~~p~~~~~~i~~~~~~l~ 124 (775)
.+.++ |+.+|...-+ .+|......+.++...+.
T Consensus 101 ~Ki~~----le~~l~~f~~v~~q~~~~~D~~~l~~~~~ 134 (147)
T PF05659_consen 101 RKIEE----LEESLRRFIQVDLQLHQLRDIKELLAKMS 134 (147)
T ss_pred HHHHH----HHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 77777 5555554433 245554444555544444
No 159
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=0.51 Score=55.82 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
-.+.++...+.+. +..+|..|+-.+..+-..+. ....+.|+++.|-.++.+ .++.+..+|+.+|..+...+
T Consensus 121 y~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 YLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHhccCC-ChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhC
Confidence 3455777778777 88999999888888776544 345668999999999986 79999999999999986543
No 160
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=0.33 Score=56.34 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=116.1
Q ss_pred cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh--------hCcHHHHHHHhccCChH--HHHHHHH
Q 004073 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA--------AGVIPLLEKMISNSNSH--GAATALY 537 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~--------~G~i~~Lv~lL~s~~~~--~~AaaaL 537 (775)
...+|.|..+|.+ .|...++.|..||..++.+.. .+.+ .-.+|.++.+.++.+.+ ..|++.+
T Consensus 127 pelLp~L~~~L~s----~d~n~~EgA~~AL~KIcEDsa----~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv 198 (885)
T KOG2023|consen 127 PELLPQLCELLDS----PDYNTCEGAFGALQKICEDSA----QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV 198 (885)
T ss_pred hhHHHHHHHHhcC----CcccccchhHHHHHHHHhhhH----HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence 5678899999988 788899999999999964221 1111 12689999999988764 4455544
Q ss_pred hcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHH
Q 004073 538 LNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKS 616 (775)
Q Consensus 538 ~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~a 616 (775)
-..... ..+..+.. ...+..|..+-.+. +++++++.+.+|..|......|..=--.|+|+.++....+.+..+.-+|
T Consensus 199 Nq~i~~-~~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEA 276 (885)
T KOG2023|consen 199 NQFIII-QTQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEA 276 (885)
T ss_pred hheeec-CcHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHH
Confidence 322211 12222222 35677788887777 9999999999999997554443322235788888888888888888999
Q ss_pred HHHHHHHhCCcccHHHHhhC-CCcHHHHHHHh
Q 004073 617 LAVLLNLAASAAGKEEMNST-PGLVSGLATVL 647 (775)
Q Consensus 617 l~~L~nLa~~~e~~~~i~~~-~g~I~~Lv~lL 647 (775)
+.....+|..+.-+..+..+ ...||.|+.-|
T Consensus 277 CEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 277 CEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 99999999988666554332 24566665533
No 161
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.73 E-value=0.2 Score=50.03 Aligned_cols=79 Identities=24% Similarity=0.281 Sum_probs=66.1
Q ss_pred hHHHHHcCcHHHHHHhccC---------CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 589 IPNLLSAGIISGLQSLAVP---------GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~LL~~---------~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
...+++.||+..|+.+|.. .+......++..|..|..+..|...++.++++|..|+..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 4467788999999997742 2346678899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 004073 660 SCLFLLCN 667 (775)
Q Consensus 660 ~~L~~Lc~ 667 (775)
.+|..+|.
T Consensus 180 eiL~~lc~ 187 (187)
T PF06371_consen 180 EILAALCL 187 (187)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999983
No 162
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.57 E-value=0.46 Score=55.72 Aligned_cols=150 Identities=10% Similarity=0.045 Sum_probs=102.3
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCCh---HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI---PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK 630 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk---~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~ 630 (775)
..+..+++.|++. ++.++..|+..+..|+.--.++ ..+...|+| |.+.|....+.+.-..+.+|..++..-..-
T Consensus 799 qi~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 799 QICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3456677888888 9999999999999987544444 233445654 777888888888777777777776532211
Q ss_pred HHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004073 631 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 631 ~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
...--..+.+|.|..+|++...+++++++..+..||..+++....--=--+---|++++..-...+|+.|...+-.
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1111123789999999999999999999999999998776532111000122346677777777777777654433
No 163
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=4 Score=48.62 Aligned_cols=256 Identities=14% Similarity=0.124 Sum_probs=156.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc-
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR- 506 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~- 506 (775)
..+|+......+..-+..+|+.++..|...+.. .+. -++..|--||++ ..+.++-.|+++|..+|..++.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flss----p~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSS----PKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHhCCcc
Confidence 445555433333778899999999988765432 122 167777778877 7888999999999998854432
Q ss_pred ----hh--HHHH-hhC---cHHHHHHHhccCChH--HH----HHHHHhcccccCCccccccc-------------cCchH
Q 004073 507 ----NK--ELML-AAG---VIPLLEKMISNSNSH--GA----ATALYLNLSFLDDAKPIIGS-------------SHAVP 557 (775)
Q Consensus 507 ----nk--~~i~-~~G---~i~~Lv~lL~s~~~~--~~----AaaaL~~Ls~~~~~k~~I~~-------------~g~i~ 557 (775)
|+ ..++ +.+ +-+.+..+|+.|.+. .. ....+.+++ ++.|..+.+ .+.+.
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~ 394 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMN 394 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHH
Confidence 11 1112 222 567778888887741 22 222222332 455553321 24556
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC
Q 004073 558 FLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST 636 (775)
Q Consensus 558 ~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~ 636 (775)
.|-++|+.....+.+++...++..+.. +++.|.. ++..|.+.+.+.... .-+..+|..|-. +|-.+..-
T Consensus 395 FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~--~i~~rILhlLG~--EgP~a~~P- 464 (865)
T KOG1078|consen 395 FLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFT--QIAVRILHLLGK--EGPKAPNP- 464 (865)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccch--HHHHHHHHHHhc--cCCCCCCc-
Confidence 677777654367788888888877764 5555544 456677777654443 667777776643 11111111
Q ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 637 PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 637 ~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+..|..+...+--.+..++..|+.+|..+..+++.- ..-+.-.|...+.+.++.+|+.|...|+.+.+
T Consensus 465 skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 465 SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 133444444444467788999999999887444211 11223334477888999999999999999983
No 164
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.28 E-value=0.035 Score=54.60 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=38.7
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
|.|-||.+-++.||+..|||.||-.|--+-++. ...|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 999999999999999999999999997777665 56899998654
No 165
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=2.2 Score=50.63 Aligned_cols=217 Identities=12% Similarity=0.077 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHHHhccChhhhHH-hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC-------------
Q 004073 439 ENLGQKCNIVEQIRLLLKDDEEARVF-TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN------------- 504 (775)
Q Consensus 439 ~~~~~q~~Al~~L~~Lak~~~~nr~~-i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~------------- 504 (775)
++.++|.+|+..|..+..-..+.-.. |.+ .....-+.-.++ .+..+..+|+..-.+++-..
T Consensus 229 ~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amks----~~deValQaiEFWsticeEEiD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 229 PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMKS----DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ 303 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 38899999999999888755443222 322 222333333344 67777777776666554110
Q ss_pred ---CchhHHHHh--hCcHHHHHHHhccCC------hH--HHHHHH-HhcccccCCccccccccCchHHHHHhhcCCCCHH
Q 004073 505 ---NRNKELMLA--AGVIPLLEKMISNSN------SH--GAATAL-YLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQ 570 (775)
Q Consensus 505 ---~~nk~~i~~--~G~i~~Lv~lL~s~~------~~--~~Aaaa-L~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~ 570 (775)
+.++..... .+++|.|+++|...+ ++ ..|+++ |..++..- +..|. .-++|.+=.-++++ +.+
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv-~~Vl~Fiee~i~~p-dwr 379 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIV-PHVLPFIEENIQNP-DWR 379 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccch-hhhHHHHHHhcCCc-chh
Confidence 011222211 368899999996522 11 333333 43333321 12232 24555555577788 999
Q ss_pred HHHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC---CCcHHHHHHH
Q 004073 571 CKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---PGLVSGLATV 646 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~---~g~I~~Lv~l 646 (775)
-++.|+.|+..+-..++ .+..-+-.+++|.++.++.++..-+++.+.++|..++..-. ..+... ...+..++.=
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEG 457 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHH
Confidence 99999999998876654 56666668899999999998888888999999999987432 222221 1233333333
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 004073 647 LDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~ 667 (775)
| ...|++-.++++++.+|+.
T Consensus 458 L-~DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 458 L-NDEPRVASNVCWAFISLAE 477 (859)
T ss_pred h-hhCchHHHHHHHHHHHHHH
Confidence 3 3689999999999999983
No 166
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.063 Score=54.97 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCccccccccccccCce----ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004073 280 PEELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT 333 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~ 333 (775)
-..|.|||++-.|.+-. +-+|||+|.-.++.+- +..+||+|++.+..++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeE
Confidence 36799999999999864 4589999988887665 356999999999877533
No 167
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.061 Score=58.79 Aligned_cols=43 Identities=19% Similarity=0.500 Sum_probs=38.0
Q ss_pred ccccccccccccC---ceecCCCCccchHHHHHHHhcCC--CCCCCCC
Q 004073 282 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGH--STCPKTQ 324 (775)
Q Consensus 282 ~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~--~~CP~t~ 324 (775)
-|.|||..+-=.| |+.+.|||+.+|.+|.+-...|. .-||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 3899999887776 99999999999999999998887 6799983
No 168
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.00 E-value=0.96 Score=51.60 Aligned_cols=151 Identities=21% Similarity=0.170 Sum_probs=114.4
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCCh----HHHHHHHHHHHHHhCCcc-c
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAASAA-G 629 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~----~i~e~al~~L~nLa~~~e-~ 629 (775)
....+.+++.++ +...+..|++.|..|+.+..-...+++..++..|..++.+++. .+...++.++..|-.+.- .
T Consensus 84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 456778889999 8888888999999999999999999999999999999987643 344455555555544322 1
Q ss_pred HHHHhhCCCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 630 KEEMNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
+..+.. .+|...+.++. .....+-..|+.+|-++..++....+.+.++--+..|+..+..++.+++.+|..+|..+
T Consensus 163 W~~~~~--~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 163 WESVSN--DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeccc--HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 222221 34555555553 23556778899999999888877888888888999999999999999999999998765
Q ss_pred H
Q 004073 708 R 708 (775)
Q Consensus 708 ~ 708 (775)
-
T Consensus 241 ~ 241 (713)
T KOG2999|consen 241 F 241 (713)
T ss_pred H
Confidence 4
No 169
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.96 E-value=0.14 Score=40.35 Aligned_cols=54 Identities=19% Similarity=0.057 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 611 MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 611 ~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
.++..|+.+|.+++........-.. ...++.|+.+|.+.++.++..|+.+|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678899999998875544443333 36899999999999999999999999765
No 170
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.91 E-value=2.2 Score=44.37 Aligned_cols=140 Identities=17% Similarity=0.110 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC-----ChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHH
Q 004073 572 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG-----DPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~-----~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~ 645 (775)
.-+|+..|.-++++++.|..++++.+--.|..+|... ..-++-.++++++.|...++ +...+.-..+.||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4467778888899999999999999888888887532 34566789999999988654 33444444599999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCChH---hHHHHHHCC----CHHHHH-HhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 646 VLDTGELIEQEQAVSCLFLLCNGNEK---CCQMVLQEG----VIPALV-SISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 646 lL~~~s~~~~e~Av~~L~~Lc~~~~~---~~~~v~~~G----~i~~Lv-~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.+..||...|.-|.-||..+-..+.. .++..-+-- ++..++ .+...++.+.-+.+..+.-.|.+..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999887765522 123222222 334444 6667788888888877776665543
No 171
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.87 E-value=0.094 Score=40.96 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=24.7
Q ss_pred ccccccccccccCceec-CCCC--ccchHHHHH-HHhcCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVII-ASGQ--TYERICIEK-WLSDGHSTCPKTQQK 326 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~--ty~r~~I~~-w~~~~~~~CP~t~~~ 326 (775)
.++||||...|.-||-. .|-| .||-...-. ....+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999965 6765 488754444 444566789999874
No 172
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.055 Score=59.01 Aligned_cols=60 Identities=27% Similarity=0.559 Sum_probs=48.0
Q ss_pred cccccccccccCce-----ecCCCCccchHHHHHHHhc-CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 283 LRCPISLQLMYDPV-----IIASGQTYERICIEKWLSD-GHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 283 f~CPIs~~~m~dPV-----~~~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..||||++-..-|+ ++.|||-|--.||++|+.. -...||.|.-+-.-..+.|-+.+|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 57999999888774 6789999999999999952 235699998777667888887776554
No 173
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=0.96 Score=52.65 Aligned_cols=221 Identities=14% Similarity=0.038 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh------hhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE------EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFN 499 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~------~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~n 499 (775)
..+...+..++.. ..++|..|+..+..+.+..+ .+...+.+ .+...+-+.+.. ....++..|+.+|..
T Consensus 234 ~~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D----~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 234 ACYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRD----RSLSVRVEAAKALGE 307 (823)
T ss_pred HHHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhc----CceeeeehHHHHhch
Confidence 3455666677666 77888888888877765431 11111211 223333344433 445566667777666
Q ss_pred hhccCCchhHHHHhhCcHHHHHHHhccCCh-HHHHHHHHhcc--cc------------cCCccccccccCchHHHHHhhc
Q 004073 500 LAVNNNRNKELMLAAGVIPLLEKMISNSNS-HGAATALYLNL--SF------------LDDAKPIIGSSHAVPFLVELCK 564 (775)
Q Consensus 500 Ls~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~~L--s~------------~~~~k~~I~~~g~i~~LV~LL~ 564 (775)
+-.-++ .++..-.=..++.-|+...+ .+.....+.+. |. .++.-..|..+|+..++|.=|.
T Consensus 308 ~~~vSe----e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlE 383 (823)
T KOG2259|consen 308 FEQVSE----EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLE 383 (823)
T ss_pred HHHhHH----HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeech
Confidence 531111 11111111111111111111 12222223222 11 2334456777899999999998
Q ss_pred CCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHH
Q 004073 565 GKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 643 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~L 643 (775)
+. =-+++++|...++.|+.+. .-... ++..|++++++....++.+|+.+|..++.+-.-+ +.-++.+
T Consensus 384 DE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~------eeql~~i 451 (823)
T KOG2259|consen 384 DE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR------EEQLRQI 451 (823)
T ss_pred HH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec------HHHHHHH
Confidence 87 7899999999999998644 33333 6778999999988889999999999998762222 3456778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 644 ATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 644 v~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
.+.|...++++++..--+|. .|+.+
T Consensus 452 l~~L~D~s~dvRe~l~elL~-~~~~~ 476 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLK-NARVS 476 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHH-hcCCC
Confidence 88888889999887555443 34433
No 174
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.54 E-value=2.6 Score=47.06 Aligned_cols=245 Identities=19% Similarity=0.151 Sum_probs=134.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
...+..++..|..+.+...|+.++-.|..-+.+ ++.|..+.+.|.+..+++.+.... .+...-..++.+++-++ .+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~--~d~~~~l~~a~i~~~l~-~d 95 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAP--DDDILALATAAILYVLS-RD 95 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhcccc--chHHHHHHHHHHHHHHc-cC
Confidence 355777888887555778999999999888875 788889999999999999996531 23333333344444453 23
Q ss_pred CchhHHHHhhCcHHHHHHHhcc--CCh-HHHHHHH-HhcccccCCccccccccCchHHHHHhhcC--------CCCHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISN--SNS-HGAATAL-YLNLSFLDDAKPIIGSSHAVPFLVELCKG--------KTEHQCK 572 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s--~~~-~~~Aaaa-L~~Ls~~~~~k~~I~~~g~i~~LV~LL~~--------~~~~~~k 572 (775)
..+-..+.+.+.+..++.+|.. ... ....-.. =.+++. +. ...+....+++.. .....-+
T Consensus 96 ~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 96 GLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQ-QKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred CcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------HH-HHHHHHHHHHHhccccccccCCcccccc
Confidence 4444444466777777888871 100 0000000 000000 00 0011111111100 0012223
Q ss_pred HHHHHHHHHhc---------------CCCCChHHHHHcCcHHHHHHhccC----C------------ChHHHHHHHHHHH
Q 004073 573 LDALHALYNLS---------------TIPSNIPNLLSAGIISGLQSLAVP----G------------DPMWTEKSLAVLL 621 (775)
Q Consensus 573 ~~Al~aL~nLs---------------~~~~nk~~iv~aG~V~~Lv~LL~~----~------------~~~i~e~al~~L~ 621 (775)
..|+.+|-.++ ..+--|..+...|++..+++++.+ . +....+.++.+|.
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 34444444442 112236777788999999997641 0 1345577999999
Q ss_pred HHhCC-cccHHHHhhCC-CcHHHHHH-HhcC---CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCC
Q 004073 622 NLAAS-AAGKEEMNSTP-GLVSGLAT-VLDT---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 681 (775)
Q Consensus 622 nLa~~-~e~~~~i~~~~-g~I~~Lv~-lL~~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 681 (775)
|.+-. .+++....... +.++.+.. ++.. ..+.....++++|.||+.+++..+..+...++
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 98653 44455444332 22233332 2222 23344678999999999988766666655543
No 175
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=92.01 E-value=0.15 Score=51.76 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=45.4
Q ss_pred ccccccccccccCceec-CCCCccchHHHHHHHh-cCCCCCCC--CCCCCCCCCCcccHHH
Q 004073 282 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLS-DGHSTCPK--TQQKLPHLCLTPNYCV 338 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~-~~~~~CP~--t~~~l~~~~l~pn~~l 338 (775)
+.+|||+++...-|++. .|.|.|||..|++.++ .....||. |.|.+....++-.+-|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 46999999999999876 7999999999999998 45677997 7677666655544433
No 176
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.95 E-value=4.7 Score=47.97 Aligned_cols=236 Identities=9% Similarity=0.102 Sum_probs=138.1
Q ss_pred hhhHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 424 VFERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 424 ~~~~i~~Ll~-~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
+...+.+|++ .+.++ +|..+..|+.+......+.+..+..=...+++|.++.++.. ...-+...+.|+|..++.
T Consensus 361 Iv~~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D----~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD----PSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred chhhhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC----chhhhcchHHHHHHHHHh
Confidence 3467888888 78887 99999999999999998877777666667999999999985 566777889999999875
Q ss_pred cCCchhHH-HHhhCcHHHHHHHhccCCh-HHHHHHHHhccccc--CCccc----cccc---cCchHHHHHhhc--CCCCH
Q 004073 503 NNNRNKEL-MLAAGVIPLLEKMISNSNS-HGAATALYLNLSFL--DDAKP----IIGS---SHAVPFLVELCK--GKTEH 569 (775)
Q Consensus 503 ~~~~nk~~-i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~--~~~k~----~I~~---~g~i~~LV~LL~--~~~~~ 569 (775)
+..+...- ..-.+.++.++.-|..... ..+++|++.+|+.. +.... .... ...|..|++.-+ ++...
T Consensus 436 ~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqs 515 (859)
T KOG1241|consen 436 FLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQS 515 (859)
T ss_pred hchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchh
Confidence 43322111 1123455555555554443 47899999999842 21111 1221 112333333332 22235
Q ss_pred HHHHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHH---------hccCCC----hHHHHHHHHHHHHHhC-CcccHHHHh
Q 004073 570 QCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQS---------LAVPGD----PMWTEKSLAVLLNLAA-SAAGKEEMN 634 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~---------LL~~~~----~~i~e~al~~L~nLa~-~~e~~~~i~ 634 (775)
..+..|-.||..|..+.. ....++ .+....... .+...+ ..++..-+.+|..+-. ....+..+.
T Consensus 516 NLR~AAYeALmElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~ 594 (859)
T KOG1241|consen 516 NLRSAAYEALMELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS 594 (859)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH
Confidence 688888899998875443 333332 222222222 121111 1223333444444322 122333343
Q ss_pred hCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 004073 635 STPGLVSGLATVLDT-GELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~ 667 (775)
+ .....++.++.+ .|..+.|.|..+...+..
T Consensus 595 d--~iM~lflri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 595 D--QIMGLFLRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred H--HHHHHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 3 345566677766 566677777766666654
No 177
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.69 E-value=3.4 Score=49.82 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=37.0
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
+++++.+++.++ ++.+++.|+-|+.+| +.-++....++|.+..+..++.+.++.++..|+.+|..+.
T Consensus 128 ~~~~ik~~l~d~-~ayVRk~Aalav~kl--y~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 128 IIDPIKKLLTDP-HAYVRKTAALAVAKL--YRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHccCC-cHHHHHHHHHHHHHH--HhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 455555555555 555666666555555 2333444455555555555555555555555555555554
No 178
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=3.8 Score=50.94 Aligned_cols=211 Identities=16% Similarity=0.192 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHHHh--hCcHHHHHHHhccCCh--HHHHHHHH---hcccccCCccccccccCchH
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELMLA--AGVIPLLEKMISNSNS--HGAATALY---LNLSFLDDAKPIIGSSHAVP 557 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL---~~Ls~~~~~k~~I~~~g~i~ 557 (775)
.+..+|..+..+|..++.. +.......+ ......|..-+++... +..++.+| +.+.. .+....| ...|+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI--PKLIP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH--HHHHH
Confidence 4678899998888888643 222222211 1123333333333222 22233333 32222 1222222 24555
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcC------cHHHHHHhccCC----ChHHHHHHHHHHHHHhCCc
Q 004073 558 FLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG------IISGLQSLAVPG----DPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 558 ~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG------~V~~Lv~LL~~~----~~~i~e~al~~L~nLa~~~ 627 (775)
.++-.+++. +...++.|...|+.++. .....+.| +|...+.++..+ ...++-..+-++..+....
T Consensus 742 EvIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 555555666 89999999999999972 11112222 444444444332 2222222133333332211
Q ss_pred ccHHHHhhC---CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 628 AGKEEMNST---PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 628 e~~~~i~~~---~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
..++.. .+.+..+...|..+++.+...|++.+-.++..-++.+-.-..+-+++.+..++...+...|.+...||
T Consensus 817 ---~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 817 ---KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred ---hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 112221 24556666677789999999999999999987665555555555888888999888899998888888
Q ss_pred HHh
Q 004073 705 MLF 707 (775)
Q Consensus 705 ~~L 707 (775)
..|
T Consensus 894 ekL 896 (1176)
T KOG1248|consen 894 EKL 896 (1176)
T ss_pred HHH
Confidence 655
No 179
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=13 Score=43.99 Aligned_cols=242 Identities=12% Similarity=0.117 Sum_probs=137.1
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHH
Q 004073 433 NVLNEGEN-LGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 510 (775)
Q Consensus 433 ~~L~s~~~-~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~ 510 (775)
..|.++.+ .-++.+|+-.|-.|.+.+++ ++. .+-+..++.+|.. .+..+...+...+--|+..+++.-
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D----~~~gv~ta~~sLi~~lvk~~p~~y-- 222 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDD----QHMGVVTAATSLIEALVKKNPESY-- 222 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCc----cccceeeehHHHHHHHHHcCCHHH--
Confidence 34555522 34555666666666666653 334 4677889999987 455555555555555554333221
Q ss_pred HHhhCcHHHHHHHhc-----cCCh--------------HHHHHHHHhcccccCCccccccccCchHHHHHhhcCC---CC
Q 004073 511 MLAAGVIPLLEKMIS-----NSNS--------------HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK---TE 568 (775)
Q Consensus 511 i~~~G~i~~Lv~lL~-----s~~~--------------~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~---~~ 568 (775)
.+++++-+.-|. .+.+ ..+.+.+|.++-..++.-....-..++..++...+.. .+
T Consensus 223 ---k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~ 299 (938)
T KOG1077|consen 223 ---KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKK 299 (938)
T ss_pred ---hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccc
Confidence 122333232221 1111 1446666665533333221111123334444433321 01
Q ss_pred H---HHHHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004073 569 H---QCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 569 ~---~~k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
. -++.+.+--..+|+.+-+ ....+++ ++..|-.+|.+.+..++-.++..+..||++.....++-.+ ...++
T Consensus 300 vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii 374 (938)
T KOG1077|consen 300 VQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTII 374 (938)
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHH
Confidence 1 123333333345555444 3333333 5778888999888899999999999999997777777665 67888
Q ss_pred HHhc-CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHH
Q 004073 645 TVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDK 699 (775)
Q Consensus 645 ~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~k 699 (775)
..|+ ..+-.++..|+..|+.+|..+ +...+ |.-|++-+.+.+..+|+.
T Consensus 375 ~sLkterDvSirrravDLLY~mcD~~--Nak~I-----V~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 375 NSLKTERDVSIRRRAVDLLYAMCDVS--NAKQI-----VAELLQYLETADYSIREE 423 (938)
T ss_pred HHhccccchHHHHHHHHHHHHHhchh--hHHHH-----HHHHHHHHhhcchHHHHH
Confidence 8888 467789999999999999865 33333 334555555555555543
No 180
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.20 E-value=7.2 Score=43.01 Aligned_cols=198 Identities=14% Similarity=0.056 Sum_probs=137.6
Q ss_pred HhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH-----HHHh--hCcHHHHHHHhccCChHHHHHHH
Q 004073 464 FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE-----LMLA--AGVIPLLEKMISNSNSHGAATAL 536 (775)
Q Consensus 464 ~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~-----~i~~--~G~i~~Lv~lL~s~~~~~~Aaaa 536 (775)
.+...|.+..|+..|.. -+-+.+..++....++-.....++. .+.. ..++..|+.--...+.--.+-.+
T Consensus 71 Ei~~~dll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHH
Confidence 34556889999998887 6888888888888777543333332 2222 23555555554544434556666
Q ss_pred HhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CCChHHHHHc---CcHHHHHHhccCCChHH
Q 004073 537 YLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSA---GIISGLQSLAVPGDPMW 612 (775)
Q Consensus 537 L~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~nk~~iv~a---G~V~~Lv~LL~~~~~~i 612 (775)
|.....++.....|.....+-.+.+.+..+ +-++..+|..++..|-.. ..-....+.. ..+.....||.+++-.+
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 666777666555666677888899999988 999999999999997654 3334444443 35566777999999999
Q ss_pred HHHHHHHHHHHhCCcccHHH---HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 613 TEKSLAVLLNLAASAAGKEE---MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 613 ~e~al~~L~nLa~~~e~~~~---i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
+..++..|..|-..+.+... .+.++.-+..++.+|++.+..+|-.|..++=-..
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 99999999999988887664 4555567888999999999999999998875443
No 181
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.14 Score=55.40 Aligned_cols=53 Identities=30% Similarity=0.448 Sum_probs=48.5
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
.-.|.+++..|.|||-...|-.||-..|-.|+.. +.+-|.|++++...+|++-
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKL 92 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceee
Confidence 4589999999999999999999999999999986 7788999999999888874
No 182
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.96 E-value=0.93 Score=40.61 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=55.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHH--CCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ--EGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~--~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..++.++..+.+.+.++|..|+.+|++++... +..++. ..++..|..++.+.++.+|..|.-|-++|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 57888999999999999999999999999753 223332 458889999999999999999987777764
No 183
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.76 E-value=3.6 Score=47.68 Aligned_cols=148 Identities=14% Similarity=0.049 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcc---ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKD---DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~---~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+...+..|.+. ++.++.+|+.....|++- .-+ -..+...|. .|-...+..++++.-..+.|+..+....
T Consensus 606 vStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~------iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 606 VSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGE-TKELAKLGN------ILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred HHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhH------HHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 44556677777 889999999888887752 100 012333332 3333333477887766666666653222
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
.-.+.+---.|.+|.|..+|++...+ .+..+.+..++..........+ -..--.|+++|++- +.+.+.+|..++..
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~-nKeiRR~A~~tfG~ 756 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW-NKEIRRNATETFGC 756 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh-hHHHHHhhhhhhhh
Confidence 11111112368999999999987753 5566666666554332222222 23445788999887 99999999999988
Q ss_pred hcC
Q 004073 582 LST 584 (775)
Q Consensus 582 Ls~ 584 (775)
++.
T Consensus 757 Is~ 759 (975)
T COG5181 757 ISR 759 (975)
T ss_pred HHh
Confidence 763
No 184
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=2.4 Score=50.40 Aligned_cols=241 Identities=17% Similarity=0.127 Sum_probs=137.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.-+.+++...... +.+.++-.---|.+.++..++-. .+++..+++ +..++++.++.-|++.+.-+-. +
T Consensus 49 slF~dvvk~~~T~-dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~k----D~~d~np~iR~lAlrtm~~l~v--~ 116 (734)
T KOG1061|consen 49 SLFPDVVKCMQTR-DLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLK----DCEDPNPLIRALALRTMGCLRV--D 116 (734)
T ss_pred hhhHHHHhhcccC-CchHHHHHHHHHHHhhccCchHH-----Hhhhhhhhc----cCCCCCHHHHHHHhhceeeEee--h
Confidence 4566677767666 77777777777777777765421 233333333 3344788888887777666532 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
+ +-...+.+|...++.++.-....+++..-...+.+.......|.++.|-+++.+. ++.+..+|+.+|..+...
T Consensus 117 -~----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 117 -K----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHES 190 (734)
T ss_pred -H----HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHh
Confidence 1 1234678899999988875554444444445566677777789999999999987 999999999999999854
Q ss_pred CCC-hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC---CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004073 586 PSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA---SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 586 ~~n-k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~---~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
+.+ -.-.+..-.+..++..+...+.-- -+.+|.+|+. .+. +++ ...+..+...|.+..+.+.-.++.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~---qi~IL~~l~~y~p~d~-~ea----~~i~~r~~p~Lqh~n~avvlsavKv 262 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWG---QIFILDCLAEYVPKDS-REA----EDICERLTPRLQHANSAVVLSAVKV 262 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhh---HHHHHHHHHhcCCCCc-hhH----HHHHHHhhhhhccCCcceEeehHHH
Confidence 443 111111123333444343322221 2233333433 221 111 1234444555556666666666666
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCC
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGS 693 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~ 693 (775)
++.+...-.. .....-..+-++|+.++....
T Consensus 263 ~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 263 ILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHHH-HHHHHHHHhcccceeeecccc
Confidence 6665543322 222222334455555554443
No 185
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=90.51 E-value=5 Score=42.31 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccC---C--CH---HHHHHHHHHHHHhhccCCchhHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCE---R--NS---YAQEIGAMALFNLAVNNNRNKEL 510 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~---~--d~---~~qe~A~~aL~nLs~~~~~nk~~ 510 (775)
+.+.|..|+.+|..--...++.--.+-. .|.+..|++=+-+-... . .. .-..+|+..|--+|. +++-|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 5677888887776554444444434444 68888887644332111 1 11 222455555666665 7889999
Q ss_pred HHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCc--cccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 511 MLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 511 i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~--k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
++++...--|..+|+..+. +-.+.+++..|...++. -..+...+.+|..++.+..| +.-.|..|.-++..
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQK 165 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHH
Confidence 9999877777777765542 23477777777664432 22334579999999999999 99999999999988
Q ss_pred hcCCCC-------ChHHHHH-cCcHHHHHH-hccCCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004073 582 LSTIPS-------NIPNLLS-AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 582 Ls~~~~-------nk~~iv~-aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
+-.++. +..++-. +.++..+|. +..+.++.+.+..+..-..|+.++.++.++..
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 865543 2333333 335555565 45677899999999999999999999988764
No 186
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.50 E-value=0.48 Score=54.50 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=102.8
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN---IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~n---k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~ 631 (775)
.+..++.+|++. .+.++..|+.....|+.--.+ -..+...|.| |.+-|....+.+.-..+.++..+.+.-.-+.
T Consensus 605 ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 466677889998 899999999988888643222 2334445554 6677777778777777777776655332221
Q ss_pred HHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 632 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
----..|.+|.|..+|++...+++++.+..+..+|..++++...--=--+---|+.++.+.+.+.|++|...+-.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 10012488999999999999999999999999999887654211100112234677778888888988876654443
No 187
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=90.10 E-value=9.1 Score=41.31 Aligned_cols=221 Identities=14% Similarity=0.127 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHH-hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh-hCcH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVF-TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-AGVI 517 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~-i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-~G~i 517 (775)
+.-.+.-|+..+.+++-. .+.|.. .++...-..++.+|++.. .+..+|.+.+.++.-|+. +......+-+ ...+
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli 237 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYV--GVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 334666777788777765 445554 455656677888887644 567899999999988875 3333322222 3466
Q ss_pred HHHHHHhccCCh---HHHHHHHHhcccccCCccccccc---cCchHHHHHhhcCC--CCHHHHHHHHHH-----------
Q 004073 518 PLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS---SHAVPFLVELCKGK--TEHQCKLDALHA----------- 578 (775)
Q Consensus 518 ~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~---~g~i~~LV~LL~~~--~~~~~k~~Al~a----------- 578 (775)
.-|+.+.+.... -.-+++++.|+.. ...|..|.. .|-+.+-|++|..+ .+.+.+.+.-..
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 677777765432 1347788877665 233444443 45456666666543 233322211110
Q ss_pred ------HHHh-------cC-------CCCChHHHHHc--CcHHHHHHhccCCChH-HHHHHHHHHHHHhC-CcccHHHHh
Q 004073 579 ------LYNL-------ST-------IPSNIPNLLSA--GIISGLQSLAVPGDPM-WTEKSLAVLLNLAA-SAAGKEEMN 634 (775)
Q Consensus 579 ------L~nL-------s~-------~~~nk~~iv~a--G~V~~Lv~LL~~~~~~-i~e~al~~L~nLa~-~~e~~~~i~ 634 (775)
+..| |. .+.|..++.+. .++..|.++++..++. +...|+.=|..+.. .|+++.-+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 1111 11 12367777764 4788889988765544 33445555555544 688888777
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
.. |+=..++++|.+.+++++=.|+.++..+-
T Consensus 397 Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KY-GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred Hh-hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 75 99999999999999999999999987654
No 188
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=89.97 E-value=1.6 Score=44.15 Aligned_cols=105 Identities=14% Similarity=0.035 Sum_probs=78.0
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhC---------------CCcHHHHHHHhcC------CCHHHHHHHHHHHH
Q 004073 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---------------PGLVSGLATVLDT------GELIEQEQAVSCLF 663 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~---------------~g~I~~Lv~lL~~------~s~~~~e~Av~~L~ 663 (775)
+.+.+....+.++.+|+||+...++...++.. ...+..|++.+.. .....-.+.+.+|.
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 33445556789999999999999998866542 1356677777665 23456788999999
Q ss_pred HhhcCChHhHHHHHHC--CC--HHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 664 LLCNGNEKCCQMVLQE--GV--IPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 664 ~Lc~~~~~~~~~v~~~--G~--i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
|+++.. +.++.+++. +. +..|+.+....+..-|+.++.+|+++.=.
T Consensus 84 NlS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 84 NLSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HhcCCH-HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 998875 677777775 34 77888888888666677888999998733
No 189
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=3.8 Score=47.93 Aligned_cols=213 Identities=11% Similarity=0.083 Sum_probs=120.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC-----Cc
Q 004073 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN-----NR 506 (775)
Q Consensus 432 l~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-----~~ 506 (775)
+..+.++.+..++..|++.|-.|.....-.+ -.....+..++. .+..++..|+.++.-.+.-. .+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD----~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSD----DYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcc----hHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3334333388899999999887765321111 223566778877 67888888877665543111 11
Q ss_pred -hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHH-HH-HhhcCCCCHHHHHHHHHHHHH
Q 004073 507 -NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPF-LV-ELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 507 -nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~-LV-~LL~~~~~~~~k~~Al~aL~n 581 (775)
+...+ ...++..+-+.++..+- +..|+.+|..+-...+ ..|.- |= +++.+..........-+.|+.
T Consensus 273 ~~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe--------e~i~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 273 SEEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE--------EIIQQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred hhhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH--------HHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 11111 23355555666655442 3444444433222110 00000 00 011100001111112222222
Q ss_pred hc---C------------CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHH
Q 004073 582 LS---T------------IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV 646 (775)
Q Consensus 582 Ls---~------------~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~l 646 (775)
=- + .++.-..++..|+-..+|.=|.+.-..+++.|+..+..|+.+..+-. ..++.-||++
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDM 418 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDM 418 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHH
Confidence 11 0 12234457788888888988877777888999999999988655433 2467889999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC
Q 004073 647 LDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
+.+.-..++..|+.+|..|+.+
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHH
Confidence 9888889999999999888764
No 190
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=89.21 E-value=0.4 Score=37.26 Aligned_cols=40 Identities=25% Similarity=0.648 Sum_probs=31.2
Q ss_pred cccccc--cccCceecCCC-----CccchHHHHHHHhc-CCCCCCCCC
Q 004073 285 CPISLQ--LMYDPVIIASG-----QTYERICIEKWLSD-GHSTCPKTQ 324 (775)
Q Consensus 285 CPIs~~--~m~dPV~~~~G-----~ty~r~~I~~w~~~-~~~~CP~t~ 324 (775)
|-||++ --.+|.+.||. +-+=+.|+.+|+.. ++.+||.|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 677775 45678888874 66889999999974 467899985
No 191
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.08 E-value=15 Score=41.84 Aligned_cols=192 Identities=20% Similarity=0.114 Sum_probs=111.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHh-chhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL-ESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL-~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+..++....+..+...+..++..+..++..-...- .+ ..++..+...+ ............+..+|..-.|...+
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4455666665555467888888888888875411000 00 12233333333 11111112222233334433333211
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChHHHHHHHHhccccc-CCc-------------cccccccCchHHHHHhhcCCCCHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL-DDA-------------KPIIGSSHAVPFLVELCKGKTEHQ 570 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~-~~~-------------k~~I~~~g~i~~LV~LL~~~~~~~ 570 (775)
+.. ....+..|+.+|.+......|+..+..|..+ ++. |..+. ...+|.|++-.+.. +..
T Consensus 266 ~~~-----~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~-~~~ 338 (415)
T PF12460_consen 266 HPL-----ATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEA-DDE 338 (415)
T ss_pred Cch-----HHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhc-Chh
Confidence 111 1235777888888755445566666554443 221 11121 35688888888876 666
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc
Q 004073 571 CKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~ 627 (775)
.+.+-+.||.++..+-.....+-+ ...+|.|++-|..++..++..++.+|..+....
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 899999999999876553333333 458888889888888888899999999988755
No 192
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.97 E-value=41 Score=40.69 Aligned_cols=248 Identities=11% Similarity=0.088 Sum_probs=132.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh
Q 004073 434 VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 513 (775)
Q Consensus 434 ~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~ 513 (775)
.|+.. ++-++.+|+.....+-...++.-. -+++....+|.+ .+..+...++..+..++..++++-..+.+
T Consensus 150 Ll~~~-~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~e----k~hGVL~~~l~l~~e~c~~~~~~l~~fr~ 219 (866)
T KOG1062|consen 150 LLQHR-DPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCE----KHHGVLIAGLHLITELCKISPDALSYFRD 219 (866)
T ss_pred HHhCC-CHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhh----cCCceeeeHHHHHHHHHhcCHHHHHHHHH
Confidence 44555 788888888777666655554322 345666677766 56677777777777776544433333322
Q ss_pred hCcHHHHHHHhccCChHHHHHHHHhcccccCCcccccccc--C-chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC---
Q 004073 514 AGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSS--H-AVPFLVELCKGKTEHQCKLDALHALYNLSTIPS--- 587 (775)
Q Consensus 514 ~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~--g-~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~--- 587 (775)
.++.|+..|+.-.. ..++...++ .-|-+. . -|-.|+++|..+ +++..+.-...|..++.+.+
T Consensus 220 --l~~~lV~iLk~l~~--------~~yspeydv-~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvatntdssk 287 (866)
T KOG1062|consen 220 --LVPSLVKILKQLTN--------SGYSPEYDV-HGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVATNTDSSK 287 (866)
T ss_pred --HHHHHHHHHHHHhc--------CCCCCccCc-cCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccccc
Confidence 66666666643110 001100000 001000 0 012344555555 66666666666666665433
Q ss_pred ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhh----------CCCc----HHHHHHHhcCCCHH
Q 004073 588 NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS----------TPGL----VSGLATVLDTGELI 653 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~----------~~g~----I~~Lv~lL~~~s~~ 653 (775)
|...++=-..|..++.+.. +..++..|+.+|...-.++++-...+. .+.+ =..+++.|++.++.
T Consensus 288 N~GnAILYE~V~TI~~I~~--~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~S 365 (866)
T KOG1062|consen 288 NAGNAILYECVRTIMDIRS--NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVS 365 (866)
T ss_pred cchhHHHHHHHHHHHhccC--CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHH
Confidence 3333333233333333332 233345555555555444432221111 0011 24577788888888
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHH-HHHHHhHhccC
Q 004073 654 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ-RLLMLFREQRQ 712 (775)
Q Consensus 654 ~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~-~LL~~L~~~~~ 712 (775)
+|..|+..++.|...+ +.+.+ +..|+.++...++..|...+ ++...-.++.+
T Consensus 366 IkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 366 IKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 9999999888888764 44444 55688888888888885555 44444444444
No 193
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=47 Score=39.63 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=42.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHHHhHhccC
Q 004073 639 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 639 ~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
++..|-.+|.+....+|--|+..+..||+.. .....+... ...++..+. ..+..+|++|..||..+++..+
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~--~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSE--FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhcc--chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence 4555555555555555555555555555542 222222222 455555555 6788999999999999987654
No 194
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.73 E-value=1.1 Score=46.53 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHhhCC------CcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChHhH-HHHHHCCCH
Q 004073 611 MWTEKSLAVLLNLAASAAGKEEMNSTP------GLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCC-QMVLQEGVI 682 (775)
Q Consensus 611 ~i~e~al~~L~nLa~~~e~~~~i~~~~------g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G~i 682 (775)
.-+..|+.+|..|+-.+.+..-+..++ ..+..|+++|. +.++..+|-|+.+|.+||..+...+ ....+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 446899999999999888888776642 24555666665 4688999999999999999886665 555777899
Q ss_pred HHHHHhhhcCChHHHHH
Q 004073 683 PALVSISVNGSTRGRDK 699 (775)
Q Consensus 683 ~~Lv~Ll~~g~~~~k~k 699 (775)
..|+.+++.+...++..
T Consensus 219 ~~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998766555443
No 195
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.71 E-value=1.6 Score=39.11 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC-CCcHHHHHHHhcCC
Q 004073 572 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDTG 650 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-~g~I~~Lv~lL~~~ 650 (775)
++.++.+|...+..-.....-.-.-++++++..+.+.+..++..|+.+|.|++.... ..+..+ ......|.+++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 556777777776543333222234589999999999999999999999999986543 333322 25667778888888
Q ss_pred CHHHHHHHHHHHHHh
Q 004073 651 ELIEQEQAVSCLFLL 665 (775)
Q Consensus 651 s~~~~e~Av~~L~~L 665 (775)
++.+|..| ..|-.|
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 88877665 444443
No 196
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=0.27 Score=53.90 Aligned_cols=49 Identities=18% Similarity=0.448 Sum_probs=40.7
Q ss_pred CCccccccccccccCce-----e---cCCCCccchHHHHHHHhcC------CCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPV-----I---IASGQTYERICIEKWLSDG------HSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV-----~---~~~G~ty~r~~I~~w~~~~------~~~CP~t~~~l~ 328 (775)
-.+..|-||++.-.+++ . ..|.|+||-.||.+|-... ...||.|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 47899999999999998 3 4699999999999997532 367999987643
No 197
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=88.44 E-value=7 Score=46.40 Aligned_cols=254 Identities=14% Similarity=0.084 Sum_probs=132.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~--nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
..+..|.+. +..++.+|+..+..+++--.. --..|+..|.| |...|.. +++++.-..+.||..+.....-.
T Consensus 803 tiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylge----eypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 803 TILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGE----EYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCc----ccHHHHHHHHHHHHHHHHhcccc
Confidence 345566666 889999999998888753100 01124444532 4455544 77877655555554442111111
Q ss_pred hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 508 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
|..==-.|.+|.|..+|++.+. ++++...+..++..........+ -..--.|+++|+.- +.+.+.+|..++..++.
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHH
Confidence 1111135799999999998876 46777777777654332222221 13445788888887 88999999999988863
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChH---HHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPM---WTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~---i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
--+- ..++..|+.-|...+.. .+..|+++.+.-|.- -.++|.|+.=-+.....+|.-.+.+
T Consensus 955 aIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p----------FtVLPalmneYrtPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 955 AIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP----------FTVLPALMNEYRTPEANVQNGVLKA 1018 (1172)
T ss_pred hcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc----------hhhhHHHHhhccCchhHHHHhHHHH
Confidence 1111 22333344333222111 111223332222221 1234444444445566667665555
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
|..+...-.+.....+ .-+.|.|-.-+.+.+.--|.-|..+++++.
T Consensus 1019 lsf~FeyigemskdYi-yav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYI-YAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHHHHHHHHHhhhHH-HHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 5554432111111110 113444445556666666677777776665
No 198
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=0.14 Score=53.02 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=41.8
Q ss_pred CccccccccccccCce----------ecCCCCccchHHHHHHHhcC-CCCCCCCCCCCCCCCCc
Q 004073 281 EELRCPISLQLMYDPV----------IIASGQTYERICIEKWLSDG-HSTCPKTQQKLPHLCLT 333 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV----------~~~~G~ty~r~~I~~w~~~~-~~~CP~t~~~l~~~~l~ 333 (775)
++=.|-||++-+-+-| .++|+|+|---||.-|.--| ..|||.|+++.+-+.+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 4568999988777666 68999999999999997654 57999998876544433
No 199
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=87.56 E-value=0.55 Score=36.21 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=22.0
Q ss_pred cccccccc--cCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 285 CPISLQLM--YDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 285 CPIs~~~m--~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
||+|.+.| +|--.. +||.-+||-|..+-...++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888 332334 57999999997777766788999999876
No 200
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.55 E-value=1.4 Score=37.25 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhcc-CCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004073 572 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~-~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
.+.|++|+.|+++.+.....+-+.++|+.++++.. ++...++--|..+|..++...+|.+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67899999999998888877778899999999875 46678889999999999999999887654
No 201
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=87.54 E-value=2.8 Score=44.15 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=116.9
Q ss_pred HHHHHHHhcccccCCccccccccCchHHHHHhhcCC----CCHHHHHHHHHHHHHhcCCC--CChHHHHHcCcHHHHHHh
Q 004073 531 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK----TEHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSL 604 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~----~~~~~k~~Al~aL~nLs~~~--~nk~~iv~aG~V~~Lv~L 604 (775)
.+|.+.+..++.+++.|..+.+....--|.-.|+.. .-+-.+-.+++++..|...+ +....+...++||..+..
T Consensus 68 cnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 68 CNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 457888888999999999888877655555555433 12457888999999998633 356666779999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCC-------cHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004073 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPG-------LVSGLAT-VLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g-------~I~~Lv~-lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
+..|+.--+..|.-++..+-.++.|-.-+..+.. ++..+|. +....+++.-.+.+++-..|+.+. ..+.++
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL 226 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREAL 226 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHH
Confidence 9888887778899999998888888777665432 2222332 233679999999999999998876 445544
Q ss_pred HHCCCHHH-H----HHhhhcCChHHHHHHHHHHHHhH
Q 004073 677 LQEGVIPA-L----VSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 677 ~~~G~i~~-L----v~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
.+ .+|. | ..-...+++.+|+.=..++.++.
T Consensus 227 ~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 227 RQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp HH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 43 2222 2 11222357777877777777664
No 202
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.43 E-value=23 Score=40.30 Aligned_cols=137 Identities=15% Similarity=0.214 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhhccC---CchhHHHHhhCcHHHHHHHhccCCh---------HHHHHHHHhcccccCCccccccccCc
Q 004073 488 YAQEIGAMALFNLAVNN---NRNKELMLAAGVIPLLEKMISNSNS---------HGAATALYLNLSFLDDAKPIIGSSHA 555 (775)
Q Consensus 488 ~~qe~A~~aL~nLs~~~---~~nk~~i~~~G~i~~Lv~lL~s~~~---------~~~AaaaL~~Ls~~~~~k~~I~~~g~ 555 (775)
.-|-.|+-....+..++ ..||+.+.++=+++.+-++|.+++. +.-+.++|.-++..++-...----..
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~~ 105 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVSR 105 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHHh
Confidence 33455554455554322 2468888888888899999976431 24466666666666553321111367
Q ss_pred hHHHHHhhcCCCCHH------HHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc--cCCChHHHHHHHHHHHHHhC
Q 004073 556 VPFLVELCKGKTEHQ------CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA--VPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 556 i~~LV~LL~~~~~~~------~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL--~~~~~~i~e~al~~L~nLa~ 625 (775)
||.|..++..+.+++ ..+++-..|+.+++.+.....++..|+++.+-++- .+.... ...++.++..++.
T Consensus 106 IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d-~alal~Vlll~~~ 182 (698)
T KOG2611|consen 106 IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHD-MALALKVLLLLVS 182 (698)
T ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchh-HHHHHHHHHHHHH
Confidence 999999998664444 88999999999999999999999999999999843 333222 1344444444443
No 203
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=87.12 E-value=26 Score=38.31 Aligned_cols=190 Identities=18% Similarity=0.167 Sum_probs=104.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
+.+...+..|... ....|..++..|..+.....-. ..+.+ .-.+..+.+.++. +...-+.-|+.++.-++..
T Consensus 43 ~~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkk----g~~~E~~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 43 DKLKEAIDLLTEK-SSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKK----GKSEEQALAARALALLALT 116 (309)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhhh
Confidence 3456667777666 7889999999999988654322 22222 3456677777776 4445555566555444432
Q ss_pred --CCchhHHHHhhCcHHHHHHHhccCCh----HHHHH---HHHhcccccCCccccccc-cCchHHHH--HhhcC-C----
Q 004073 504 --NNRNKELMLAAGVIPLLEKMISNSNS----HGAAT---ALYLNLSFLDDAKPIIGS-SHAVPFLV--ELCKG-K---- 566 (775)
Q Consensus 504 --~~~nk~~i~~~G~i~~Lv~lL~s~~~----~~~Aa---aaL~~Ls~~~~~k~~I~~-~g~i~~LV--~LL~~-~---- 566 (775)
.......+. ....|.|..++..+.. +..++ +++..++..+. ..+.. -..+..+. ..++. +
T Consensus 117 lg~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~--~~~~~~~~~le~if~~~~~~~~~~~~~ 193 (309)
T PF05004_consen 117 LGAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE--EETEELMESLESIFLLSILKSDGNAPV 193 (309)
T ss_pred cCCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHhcCcCCCccc
Confidence 223333333 3578888888876653 12222 33333333221 11100 01222111 11121 1
Q ss_pred ----CCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 567 ----TEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 567 ----~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
.++.+..+|+.+-.-|.+.- .....-.-...++.|+.+|.+.+..++..|-.+|+-|.
T Consensus 194 ~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 194 VAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred ccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 13567777777766665433 32222222457999999999999888887777776664
No 204
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.79 E-value=1.3 Score=45.83 Aligned_cols=81 Identities=23% Similarity=0.229 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHcCc-------HHHHHHhccC-CChHHHHHHHHHHHHHhCCcccHH-HHhhCCCcH
Q 004073 570 QCKLDALHALYNLSTIPSNIPNLLSAGI-------ISGLQSLAVP-GDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLV 640 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~~nk~~iv~aG~-------V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e~~~-~i~~~~g~I 640 (775)
.-+..|+.+|+.||..+.|...++..|- +..|+++|.. ++...+|-|+.+|.|||...+... .+....++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4588999999999999999988887653 3445555543 678889999999999999877655 455556899
Q ss_pred HHHHHHhcCC
Q 004073 641 SGLATVLDTG 650 (775)
Q Consensus 641 ~~Lv~lL~~~ 650 (775)
..|+..|...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999643
No 205
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.60 E-value=0.41 Score=50.63 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=37.8
Q ss_pred CCccccccccccccC---ceecCCCCccchHHHHHHHhcCC--CCCCCCC
Q 004073 280 PEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGH--STCPKTQ 324 (775)
Q Consensus 280 p~~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~--~~CP~t~ 324 (775)
-.-|.||+..+.-+| ||.++|||..-+.+..+--+.|. ..||.|-
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 346999999998876 99999999999999988877774 4599983
No 206
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.42 E-value=2.2 Score=39.66 Aligned_cols=73 Identities=11% Similarity=0.180 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
+.+..|+..|..+.+.....-|+..|..+++..+..|..+-+.|+-..+..++.. .|++++.+|+.++-.+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h----~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH----EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC----CCHHHHHHHHHHHHHHHH
Confidence 5666777777443367777889999999999999988888889999999999998 899999999999877743
No 207
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=85.75 E-value=13 Score=44.98 Aligned_cols=140 Identities=13% Similarity=0.096 Sum_probs=76.4
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
.+-+++.+.+. |.++|+-.--=|.+.+....+.. +. ++..++.=+.+.++.++-.|+++|..|= -.++..
T Consensus 57 f~dViK~~~tr-d~ElKrL~ylYl~~yak~~P~~~-lL---avNti~kDl~d~N~~iR~~AlR~ls~l~-----~~el~~ 126 (757)
T COG5096 57 FPDVIKNVATR-DVELKRLLYLYLERYAKLKPELA-LL---AVNTIQKDLQDPNEEIRGFALRTLSLLR-----VKELLG 126 (757)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHhccCHHHH-HH---HHHHHHhhccCCCHHHHHHHHHHHHhcC-----hHHHHH
Confidence 34445555544 66666644444444443333111 11 3444444455566666666666665442 123332
Q ss_pred CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 636 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
..++.+.+++.++++.+|..|+-++..+-+-+ .....+.|.+..+..|+.+.+|.+..+|...|..+...
T Consensus 127 --~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 --NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred --HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 35666666666666677777666666666544 24455566666666666666666666666666555444
No 208
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.71 E-value=52 Score=34.87 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=118.2
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc
Q 004073 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF 542 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~ 542 (775)
+....+|+.|+..|... +..+.++..|..+|.++- .. +.++.+.+..+.+.. ++.+..++..+-.
T Consensus 63 ~~~~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred hccchhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 34467889999888752 256778888888888873 22 233344444422211 2323333332221
Q ss_pred cC---C--ccccc--------cccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCC
Q 004073 543 LD---D--AKPII--------GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGD 609 (775)
Q Consensus 543 ~~---~--~k~~I--------~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~ 609 (775)
.+ . +.... ...+-+..|-..|.+.+.+-..+. .++|.|--.. -..+|..|++=+..++
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LRn~g-------~EeaI~al~~~l~~~S 200 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLRNIG-------TEEAINALIDGLADDS 200 (289)
T ss_pred hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhhccC-------cHHHHHHHHHhcccch
Confidence 11 0 11111 112334555555544412333222 4444441110 0125666777676667
Q ss_pred hHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHH
Q 004073 610 PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 687 (775)
Q Consensus 610 ~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~ 687 (775)
.-.+..+..+|..|-+ .-.|+.|.+.|.. ..|-+|..|+.+|..++... .++.|..
T Consensus 201 alfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e 258 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKE 258 (289)
T ss_pred HHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHH
Confidence 7778888888877633 4678999998874 57899999999999987754 4666777
Q ss_pred hhhcCChHHHHHHHHHHHHhHh
Q 004073 688 ISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 688 Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.+.+..+-+++.+.-.|.++..
T Consensus 259 ~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHHH
Confidence 7777888888888888877653
No 209
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=85.63 E-value=0.21 Score=41.88 Aligned_cols=47 Identities=23% Similarity=0.712 Sum_probs=23.1
Q ss_pred cccccccccccc-C---ceec----CCCCccchHHHHHHHhc--CC--------CCCCCCCCCCC
Q 004073 282 ELRCPISLQLMY-D---PVII----ASGQTYERICIEKWLSD--GH--------STCPKTQQKLP 328 (775)
Q Consensus 282 ~f~CPIs~~~m~-d---PV~~----~~G~ty~r~~I~~w~~~--~~--------~~CP~t~~~l~ 328 (775)
+..|+||..... + |+++ .||++|=..|+.+||.. +. .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999998754 2 5554 57999999999999962 21 25999988764
No 210
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.45 E-value=7 Score=46.82 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC-ccccccc-cCchHHHHHhhcCC
Q 004073 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD-AKPIIGS-SHAVPFLVELCKGK 566 (775)
Q Consensus 491 e~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~-~k~~I~~-~g~i~~LV~LL~~~ 566 (775)
-.++.+|.||+..++..|..|.+.-+++.|-.++-..+. +..++..+.||...+. +...|++ ....+.....+...
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence 567889999988777778888888778777766655554 4556677788887654 5566776 56778888777776
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChHH-HHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhCC
Q 004073 567 TEHQCKLDALHALYNLSTIPSNIPN-LLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~nk~~-iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~ 626 (775)
......+++.++..+.+..+|.-. +.+ ......++.++.+.+..++...+.+..|+...
T Consensus 640 -~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 640 -DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred -hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 888888888888877776665444 443 56777888888888888888888888886554
No 211
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=85.21 E-value=4 Score=43.08 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHH
Q 004073 444 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKM 523 (775)
Q Consensus 444 q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~l 523 (775)
...|+..|.-++--++..|..+.....+..|+++|... ..+.+|..++.+|..+-.++..|...+-+.+++..++.+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~---~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS---NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC---CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 45577788888877899999999999999999999542 578899999999988878888999988999999999999
Q ss_pred hccCCh
Q 004073 524 ISNSNS 529 (775)
Q Consensus 524 L~s~~~ 529 (775)
+++...
T Consensus 185 lk~~~~ 190 (257)
T PF08045_consen 185 LKSKST 190 (257)
T ss_pred Hccccc
Confidence 998764
No 212
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=0.47 Score=53.06 Aligned_cols=50 Identities=18% Similarity=0.482 Sum_probs=37.7
Q ss_pred CCccccccccccc-----------------cCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLM-----------------YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m-----------------~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
-..--|+||+.-. ++=++.||.|.|-|.|+++|.+.-.-.||+|+.+|++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3445799987531 1123458999999999999998655689999999864
No 213
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=84.79 E-value=7.6 Score=47.34 Aligned_cols=174 Identities=19% Similarity=0.150 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChHHHHHHHHhccccc--CCccccccccCchHHHHHh
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVEL 562 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~--~~~k~~I~~~g~i~~LV~L 562 (775)
.|.++++.|+.++..+...-. .....--...++.+++-|.+..++-.|+.++..++.. +-++..++ ..+++.|+..
T Consensus 582 ~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l-~~il~~l~~f 659 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVL-TEILPELASF 659 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhH-HHHHHHHHHH
Confidence 688999999988876643111 1111112457888888888888888888888765543 33333333 4578899998
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCC--CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcH
Q 004073 563 CKGKTEHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV 640 (775)
Q Consensus 563 L~~~~~~~~k~~Al~aL~nLs~~~--~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I 640 (775)
++.. ....+...+.++-.|..+. .....++++ ++..|-.|+.+.+..++..|+..|..++........-.. .-.+
T Consensus 660 lrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~-~~iL 736 (1233)
T KOG1824|consen 660 LRKN-QRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKIS-NPIL 736 (1233)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHh-hhhH
Confidence 8875 5555666666666665322 223333333 444455567777888899999999999886654443333 3678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 641 SGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
..++.+++ ||-.+-.|..+++.+
T Consensus 737 ~~ii~ll~--Spllqg~al~~~l~~ 759 (1233)
T KOG1824|consen 737 DEIIRLLR--SPLLQGGALSALLLF 759 (1233)
T ss_pred HHHHHHhh--CccccchHHHHHHHH
Confidence 88888886 456666666665543
No 214
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=0.62 Score=49.07 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=28.0
Q ss_pred CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 299 ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 299 ~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+|||+.|-+|...-|..|...||.|+..|-
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 899999999999999999999999988764
No 215
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=84.31 E-value=8.2 Score=44.41 Aligned_cols=150 Identities=14% Similarity=0.052 Sum_probs=101.2
Q ss_pred HHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCC---CHHHHHHHHHHHHHhcCCCCChHHHH
Q 004073 519 LLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 519 ~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~---~~~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
.+..++.+|+. +..|...|..|+.+......+....++..|..++.+|. +.....-.+.++..|-.+.-.--..+
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~ 166 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESV 166 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeec
Confidence 34556666654 33366667777777766666677788999999999882 23566666777766643332222223
Q ss_pred HcCcHHHHHHhcc--CCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004073 594 SAGIISGLQSLAV--PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 594 ~aG~V~~Lv~LL~--~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
...+|.....+.. .-+..+-..|+.+|.++..+.......+..+--+..|+..|..++..++-+|.+.+-++...
T Consensus 167 ~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 167 SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 3334444444432 22445558899999999988876555555568899999999999999999999988888753
No 216
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=84.24 E-value=16 Score=38.64 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh
Q 004073 613 TEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV 690 (775)
Q Consensus 613 ~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~ 690 (775)
...|+.+|.-+|- ++..+..+.. ...+..|+++|. ..++.++-.++.+|..+...++.+.+...+.+|+..++.++.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3456677777776 5666666666 488999999995 468999999999999999998899999999999999999887
Q ss_pred cC--ChHHHHHHHHHHHHhHhc
Q 004073 691 NG--STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 691 ~g--~~~~k~kA~~LL~~L~~~ 710 (775)
+. +..+|-|....|..+--.
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 64 677888888776655433
No 217
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.08 E-value=0.28 Score=57.51 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=40.6
Q ss_pred CccccccccccccCceec---CCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVII---ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~---~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
..-.||+|+.-+.|-.+. .|||-||.+||..|-.- -.|||.|+..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 345899999999999875 69999999999999863 5699999987754
No 218
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=83.77 E-value=0.26 Score=58.93 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=39.5
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhc-CCCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQKLPHL 330 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~ 330 (775)
+.|+||.+ ..+||++.|||.||+.|+.+.+.. ....||.|+..+.+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 99999999 888999999999999999997763 334699998766543
No 219
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=83.42 E-value=5.8 Score=39.50 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC-CHHHHHHh
Q 004073 610 PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG-VIPALVSI 688 (775)
Q Consensus 610 ~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~L 688 (775)
+.++-.++.+|.-|+..-. .+++ ..++.+...|.+.++.+|..|+.+|..|-..+. +.-.| .+..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 5567788888888876443 3332 568899999999999999999999999987541 11223 34777788
Q ss_pred hhcCChHHHHHHHHHHHHhHhccCC
Q 004073 689 SVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 689 l~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
+.+.++.++..|..++..+......
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~ 96 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNP 96 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999888877533
No 220
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=83.32 E-value=0.54 Score=51.21 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=39.5
Q ss_pred ccccccccccCceecCCCCccchHHHHHHHhc-CCCCCCCCCCCCCC
Q 004073 284 RCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQKLPH 329 (775)
Q Consensus 284 ~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~ 329 (775)
+|-||-+==+|=-|=+|||-.|-.|+..|... +..+||.|+-.+..
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 79999998888777799999999999999964 47899999866643
No 221
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.18 E-value=2.2 Score=39.69 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=55.9
Q ss_pred CcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 638 GLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 638 g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..+..|+++|. +.++.+..-|+.=|..+++.-+..+..+-+.|+=..++.|+.+.++++|..|...++.+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46788899995 346666777777788888877788888888888889999999999999999999887664
No 222
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.09 E-value=1.7 Score=30.09 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
+|.+++++.++ +++++..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 78999999999 99999999999999864
No 223
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=82.25 E-value=0.88 Score=35.99 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=33.5
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 330 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~ 330 (775)
..|=.+...=...++++|||..++.| |-.+.-+-||.|+.++...
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~---f~~~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNC---FPGERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEccccccccccccccceeeccc---cChhhccCCCCCCCcccCC
Confidence 34445566667788999999999988 4334566799999998654
No 224
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.24 E-value=0.73 Score=53.14 Aligned_cols=60 Identities=25% Similarity=0.424 Sum_probs=42.0
Q ss_pred Cccccccccccc----cCceecCCCCccchHHHHHHHhcCCCCCCCCCCC---C-CCCCCcccHHHHHHHH
Q 004073 281 EELRCPISLQLM----YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK---L-PHLCLTPNYCVKGLIA 343 (775)
Q Consensus 281 ~~f~CPIs~~~m----~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~---l-~~~~l~pn~~l~~~i~ 343 (775)
+-++|+||..+| ..||.+-||||.||.|.++-.+. +||.-+.. + ..++.--|++|-+++.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhhc
Confidence 457999997766 47999999999999999998754 78832211 1 1234555777766663
No 225
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.04 E-value=7 Score=38.89 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcH-HHHHHH
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV-SGLATV 646 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I-~~Lv~l 646 (775)
++.++.+++.+|.-|+....|- ++ ..++.+...|.++++.++..|+.+|..|...+--+. .|-+ ..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-----hhhhhHHHHHH
Confidence 4678999999999998755442 22 257788888999999999999999999987532222 2333 788888
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC
Q 004073 647 LDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
+.+.++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998865
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=82.02 E-value=15 Score=46.00 Aligned_cols=252 Identities=14% Similarity=0.113 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh---ccCCchhHHHHhhC
Q 004073 440 NLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA---VNNNRNKELMLAAG 515 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs---~~~~~nk~~i~~~G 515 (775)
..+.+.+|++-|..|+.. +++++. .-++|-+|.++.. .+..+|..|+.+|..+- ..-+.+-..+.-.-
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~D----s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY 507 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMD----SEADVRATALETLTELLALVRDIPPSDANIFPEY 507 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcC----chHHHHHHHHHHHHHHHhhccCCCcccchhhHhh
Confidence 568899999999999864 233322 3568999999987 78899999988876652 11222233344556
Q ss_pred cHHHHHHHhccCCh---HHH--------HHHHHh--cccc--------cCCccccccc---cCchHHHH--------Hhh
Q 004073 516 VIPLLEKMISNSNS---HGA--------ATALYL--NLSF--------LDDAKPIIGS---SHAVPFLV--------ELC 563 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~---~~~--------AaaaL~--~Ls~--------~~~~k~~I~~---~g~i~~LV--------~LL 563 (775)
.+|.|-.++...+. +.. |-.++. +++. ++.+-..... ......|+ .||
T Consensus 508 lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLl 587 (1431)
T KOG1240|consen 508 LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLL 587 (1431)
T ss_pred hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 88999999876332 111 111111 1111 1111110110 01111111 222
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcC----cHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCc
Q 004073 564 KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG----IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGL 639 (775)
Q Consensus 564 ~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG----~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~ 639 (775)
.+. .+-+|..-+. +|+. -+.-+.+.+ +++.|+.+|++.+..++-.-...|.-+|.. -|+..+ .+..
T Consensus 588 sd~-~~~Vkr~Lle---~i~~---LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~-VG~rs~--seyl 657 (1431)
T KOG1240|consen 588 SDS-PPIVKRALLE---SIIP---LCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF-VGWRSV--SEYL 657 (1431)
T ss_pred cCC-chHHHHHHHH---HHHH---HHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEE-EeeeeH--HHHH
Confidence 222 2222221111 1211 111222221 445556666655444332222222222211 111111 2467
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 640 VSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 640 I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
+|.|..-|.++.+.+-..|+++|..||...--.+..+.+ .++-..-++-.++.-+|+.+..++-...++-
T Consensus 658 lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 658 LPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 888888888999999999999999999754211122211 2333446677888999999998876555443
No 227
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=0.68 Score=50.37 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=43.2
Q ss_pred ccccccccccccC---ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 331 (775)
Q Consensus 282 ~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~ 331 (775)
.+.|.|++++|-| |++.|.|++|-..+|+.|-...+-.||.++..+....
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 3789999999987 9999999999999999998765589999998876543
No 228
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=81.37 E-value=31 Score=42.17 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+....+....|-...+..++..++..+.++++.-.. .....+.++.++.++.. +...+++.|...+.++...-
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~D----dqdsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRD----DQDSVREAAVESLVSLLDLL 307 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhc----chhhHHHHHHHHHHHHHHhc
Confidence 344556666665555778899999999888876433 56678999999999986 45567888877776664211
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+ ...=...-..+.++.....++.+ -+.+.....|+..- ....+...-+++...++++. ..+.+..++.-...+
T Consensus 308 ~--~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~~l~~~~-~~e~r~a~a~~~~~l 382 (759)
T KOG0211|consen 308 D--DDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV--GPSATRTQLVPPVSNLLKDE-EWEVRYAIAKKVQKL 382 (759)
T ss_pred C--CchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh--ccccCcccchhhHHHHhcch-hhhhhHHhhcchHHH
Confidence 1 11022345677788887776643 12222222222211 11333455678888888876 555665555555555
Q ss_pred cC--CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004073 583 ST--IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 583 s~--~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
+. +.+....+....++|.+..++.+.+..++...+..+.++.-.-. +..-+ +-..+.+...+++..+.++.+-..
T Consensus 383 ~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti--~~llp~~~~~l~de~~~V~lnli~ 459 (759)
T KOG0211|consen 383 ACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI--SELLPLLIGNLKDEDPIVRLNLID 459 (759)
T ss_pred hhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc--cccChhhhhhcchhhHHHHHhhHH
Confidence 53 33456666666677888877777776666665555555533111 11111 124455555555556666666554
Q ss_pred HH
Q 004073 661 CL 662 (775)
Q Consensus 661 ~L 662 (775)
.|
T Consensus 460 ~l 461 (759)
T KOG0211|consen 460 KL 461 (759)
T ss_pred HH
Confidence 33
No 229
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=80.56 E-value=1.1 Score=37.96 Aligned_cols=28 Identities=25% Similarity=0.729 Sum_probs=25.5
Q ss_pred CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 299 ASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 299 ~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
.|.|.|--.||.+|++. ...||.++|+.
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 69999999999999997 77999999875
No 230
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.48 E-value=4.1 Score=47.84 Aligned_cols=108 Identities=18% Similarity=0.056 Sum_probs=71.4
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC-----CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHh
Q 004073 598 ISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-----PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC 672 (775)
Q Consensus 598 V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-----~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~ 672 (775)
...+++||++.+..++-..+.+.+|++.+-....+++++ ...+..|++-+.+..|-.+..|+.++..+|.-+...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 345778888888877788888999987744333333331 123445555556789999999999999999654221
Q ss_pred HHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 673 CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 673 ~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.. .++.++...+.-+.+-+..+|++|.+++.-|
T Consensus 381 ~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 381 VG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 10 1112233344667788899999999988533
No 231
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=79.97 E-value=33 Score=39.02 Aligned_cols=131 Identities=17% Similarity=0.126 Sum_probs=86.1
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CC--------ChHHHHH----cCcHHHHHHhccCCChHHHHHHHHHH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PS--------NIPNLLS----AGIISGLQSLAVPGDPMWTEKSLAVL 620 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~--------nk~~iv~----aG~V~~Lv~LL~~~~~~i~e~al~~L 620 (775)
..+..|+++|.+ ++....|+.++.-|..+ ++ |...+-+ .-++|.|++-....+...+...+.+|
T Consensus 271 ~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 271 ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 356778888875 45677788888888765 22 2222222 33677777777665555678888888
Q ss_pred HHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHh
Q 004073 621 LNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 688 (775)
Q Consensus 621 ~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~L 688 (775)
.++..+-....-+.+-+..+|.|++-|...++.++..++.+|..+....++....=++ .+|+.|+.+
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~l 414 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLKL 414 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHhc
Confidence 8887754322222233467888888888889999999999999998876443332111 355555543
No 232
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=79.68 E-value=3.3 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 640 VSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 640 I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
+|.+++++.+.++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
No 233
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.53 E-value=1.2 Score=48.71 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=34.7
Q ss_pred CccccccccccccC---ce-ecCCCCccchHHHHHHHhcC--CCCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYD---PV-IIASGQTYERICIEKWLSDG--HSTCPKTQQKLPHLC 331 (775)
Q Consensus 281 ~~f~CPIs~~~m~d---PV-~~~~G~ty~r~~I~~w~~~~--~~~CP~t~~~l~~~~ 331 (775)
-.-.|.||-+.+-. -- |-.|||+|.-.|+..||... +.+||.|+-.+....
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence 34568888554321 11 33599999999999999854 358999985554443
No 234
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.21 E-value=0.46 Score=39.86 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=25.1
Q ss_pred cCCCCccchHHHHHHHhc--CCCCCCCCCCCC
Q 004073 298 IASGQTYERICIEKWLSD--GHSTCPKTQQKL 327 (775)
Q Consensus 298 ~~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l 327 (775)
=.|-|.|-+.||.+|+.. ....||.|||..
T Consensus 49 G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 49 GYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 378999999999999974 346799999865
No 235
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.92 E-value=0.93 Score=54.43 Aligned_cols=45 Identities=20% Similarity=0.561 Sum_probs=34.2
Q ss_pred ccccccccccc--Cc---eec--CCCCccchHHHHHHHh-cCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMY--DP---VII--ASGQTYERICIEKWLS-DGHSTCPKTQQKL 327 (775)
Q Consensus 283 f~CPIs~~~m~--dP---V~~--~~G~ty~r~~I~~w~~-~~~~~CP~t~~~l 327 (775)
=-|+||--++. |- --- .|.|.|--+|+-|||. .|+.+||.||..+
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 37999998865 32 111 2568899999999998 5688999999654
No 236
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=78.76 E-value=42 Score=36.60 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=85.4
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC---CCChHHHHHcCcHHHHHHhccCCC--hHHHHHHHHHHHHH---hC
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTI---PSNIPNLLSAGIISGLQSLAVPGD--PMWTEKSLAVLLNL---AA 625 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~---~~nk~~iv~aG~V~~Lv~LL~~~~--~~i~e~al~~L~nL---a~ 625 (775)
-.+..+.+.++.| ..+-+..|+.++.-|+.. ......+.+ ...|.|...+.++. ..++..|+.+|+.+ +.
T Consensus 86 tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~ 163 (309)
T PF05004_consen 86 TLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGG 163 (309)
T ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc
Confidence 3567888888888 555566677777777643 345555555 47888888887654 33434444444444 33
Q ss_pred Cc-ccHHHHhhCCCcHHHH--HHHhcC-C---------CHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhc
Q 004073 626 SA-AGKEEMNSTPGLVSGL--ATVLDT-G---------ELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVN 691 (775)
Q Consensus 626 ~~-e~~~~i~~~~g~I~~L--v~lL~~-~---------s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~ 691 (775)
.. +.....+. .+..+ ...++. + ++.+...|+..-.-|... +....... -...++.|+.++.+
T Consensus 164 ~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 164 SDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDS 239 (309)
T ss_pred CChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcC
Confidence 22 11111111 12211 111221 1 234455544443223322 22122222 23469999999999
Q ss_pred CChHHHHHHHHHHHHhHhccC
Q 004073 692 GSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 692 g~~~~k~kA~~LL~~L~~~~~ 712 (775)
.+..+|-.|-..|-+|-+...
T Consensus 240 ~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 240 DDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999988887765544
No 237
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=78.66 E-value=59 Score=35.13 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCc--c-------cccccc
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA--K-------PIIGSS 553 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~--k-------~~I~~~ 553 (775)
.++.+++.|+.+|.-++.-+.+. ....++.+...+..++. +..|+.+++.+...... - ......
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 78999999999998887643311 22357788888876654 46688888765543211 1 112234
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccC----CChHHHHHHHHHHHHHhCCcc-
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP----GDPMWTEKSLAVLLNLAASAA- 628 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~----~~~~i~e~al~~L~nLa~~~e- 628 (775)
..+..+.+.|.+. +++++..|+..+..|-..+.... ...++..|+-+-.+ .+..++..-...+-..|....
T Consensus 114 ~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 114 SLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 5788888999998 99999999999999876654333 22344445443322 234443333333444555444
Q ss_pred cHHHHhhCCCcHHHHHHHhcCC----CHHH---HHHHHHHHHHhhcC
Q 004073 629 GKEEMNSTPGLVSGLATVLDTG----ELIE---QEQAVSCLFLLCNG 668 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~----s~~~---~e~Av~~L~~Lc~~ 668 (775)
++..+.. .+++.+-.+.... ++.. -.+.+..+..++..
T Consensus 190 ~Q~~l~~--~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 190 NQERLAE--AFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred HHHHHHH--HHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence 4444443 6788877777643 2221 33556666666653
No 238
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=78.48 E-value=16 Score=44.97 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=87.3
Q ss_pred cccCchHHHHHhhcCC----CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhcc----CCC----hHHHHHHHH
Q 004073 551 GSSHAVPFLVELCKGK----TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV----PGD----PMWTEKSLA 618 (775)
Q Consensus 551 ~~~g~i~~LV~LL~~~----~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~----~~~----~~i~e~al~ 618 (775)
.+.|++..|+.+|.+- .........++.|..++.-..||.++++.|+++.|++.+. .+. ..+.+..+.
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 3467777777777542 1345666677888888888999999999999999999663 333 677788888
Q ss_pred HHHHHhCCcccHH-----HHhhC-------CCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhcCChHhHHHHHHC
Q 004073 619 VLLNLAASAAGKE-----EMNST-------PGLVSGLATVLDT----GELIEQEQAVSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 619 ~L~nLa~~~e~~~-----~i~~~-------~g~I~~Lv~lL~~----~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 679 (775)
++.-|........ ..... ..-|..|++.+.+ .++.+.+..+++|-.|+.++.+..+.+++.
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 8887765322110 00111 1126666666664 368889999999999999886665555543
No 239
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=78.46 E-value=32 Score=43.42 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=84.9
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 634 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~ 634 (775)
.++.|+..|++. +...+-+=...|..+|..-+- +-++.+.+|.|.+-|.+++..+...|+..|..|+...--+...+
T Consensus 618 iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v 694 (1431)
T KOG1240|consen 618 ILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV 694 (1431)
T ss_pred hHHHHHHHhcCc-cHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH
Confidence 578899999988 888888777777777754433 23677889999999999999999999999999998765555443
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
. ..+....-+|-..+..+|..+++++..+..
T Consensus 695 ~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 695 K--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred H--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 3 345556667778899999999999998875
No 240
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=77.89 E-value=2.3 Score=47.90 Aligned_cols=195 Identities=13% Similarity=0.064 Sum_probs=109.7
Q ss_pred HHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccC--ChHHHHHHHHhcccccCCcc-cc-
Q 004073 474 LLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS--NSHGAATALYLNLSFLDDAK-PI- 549 (775)
Q Consensus 474 Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~--~~~~~AaaaL~~Ls~~~~~k-~~- 549 (775)
++-|+....+..+.-+...|+.++..+..+..-....+.-.++...+...|.+. +.++.+++++.|++.--..+ ..
T Consensus 392 ~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~ 471 (728)
T KOG4535|consen 392 CITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTP 471 (728)
T ss_pred hHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCc
Confidence 444554322222333445566666666554333333334456666667766553 23688999998886421111 11
Q ss_pred --ccc--cC-chHHHHHhhc--CCCCHHHHHHHHHHHHHhcCCC----CChHHHHHcCcHHHHHH-hccCCChHHHHHHH
Q 004073 550 --IGS--SH-AVPFLVELCK--GKTEHQCKLDALHALYNLSTIP----SNIPNLLSAGIISGLQS-LAVPGDPMWTEKSL 617 (775)
Q Consensus 550 --I~~--~g-~i~~LV~LL~--~~~~~~~k~~Al~aL~nLs~~~----~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al 617 (775)
..+ .| .+..++.+-. +..+..++.+|..+|.|++..- +-.-..+..|.+..++. ....+...++-.++
T Consensus 472 ~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaC 551 (728)
T KOG4535|consen 472 DSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNAC 551 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHH
Confidence 111 12 1222222211 1125679999999999997421 22223334455555555 44556788889999
Q ss_pred HHHHHHhCCcccHHHHhh-CCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 004073 618 AVLLNLAASAAGKEEMNS-TPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 618 ~~L~nLa~~~e~~~~i~~-~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~ 668 (775)
.+|.||..++.-.-+-.. .....+.|..++.+ .+-+++-+|+++|..-...
T Consensus 552 ya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 552 YAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 999999998765222111 22345666666654 4668889999998877653
No 241
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=0.68 Score=36.28 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=35.3
Q ss_pred cccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
-.|-||.+--.|-|+--|||- .|-.|=.+-+..++.+||.|+.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 468999999899999999984 456665555555789999998764
No 242
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=77.38 E-value=2.5 Score=33.44 Aligned_cols=38 Identities=16% Similarity=0.414 Sum_probs=22.1
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhc-CCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQ 325 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-~~~~CP~t~~ 325 (775)
+.|.||.|++-+... .+.+.+.+....+ ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 479999988732222 3434444444433 2457999964
No 243
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=76.80 E-value=52 Score=40.36 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCcccccc-c--cCchHH
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIG-S--SHAVPF 558 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~-~--~g~i~~ 558 (775)
..+...-.+.+++..++.....+...+ .-.+...+..+.-... +..|+.++.... +..+. . .+.+..
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILDG 534 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHHH
Confidence 344444467777776654322232221 1122333333332221 455666665444 22222 1 578888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc--cCCChHHHHHHHHHHHHHhCCcccHHHHhhC
Q 004073 559 LVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA--VPGDPMWTEKSLAVLLNLAASAAGKEEMNST 636 (775)
Q Consensus 559 LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL--~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~ 636 (775)
|..+.... +.++.-....+|...+..+.-.....++-+.|..+.++ .+.++.+...+-.++..|+...++..-+..
T Consensus 535 L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e- 612 (1005)
T KOG2274|consen 535 LLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE- 612 (1005)
T ss_pred HHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-
Confidence 88888766 78888889999999999888888888888888888855 346778888888888888775555555543
Q ss_pred CCcHHHHHHHhcCCC----HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHh-hhcCChHHHHHHHHHHHHhHhc
Q 004073 637 PGLVSGLATVLDTGE----LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI-SVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 637 ~g~I~~Lv~lL~~~s----~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~L-l~~g~~~~k~kA~~LL~~L~~~ 710 (775)
-+||.|+.+|.... +....-|+.+|-.+-++.+.-....+-.-++|++.++ +.+++..+-.+|...|+.+-..
T Consensus 613 -~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 613 -RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred -HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 58999999998654 4556666777766665433223333333467888754 5567777788999999887654
No 244
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.60 E-value=96 Score=40.36 Aligned_cols=278 Identities=13% Similarity=0.100 Sum_probs=148.6
Q ss_pred chhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHh
Q 004073 423 NVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNL 500 (775)
Q Consensus 423 ~~~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nL 500 (775)
+....+-+|+..-.+.-.|..+..|+--+..+++.. +..+.- .-.||.|.++=.+ +|..+|.. ..-+.|.
T Consensus 953 ~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yD----P~~~Vq~a-M~sIW~~ 1024 (1702)
T KOG0915|consen 953 GQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYD----PDKKVQDA-MTSIWNA 1024 (1702)
T ss_pred CChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccC----CcHHHHHH-HHHHHHH
Confidence 334566666666655557888888988888888653 333322 2356666665554 67777764 5556665
Q ss_pred hccCCchhHHHHhhCcHHHHHHHhccCCh-----HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHH
Q 004073 501 AVNNNRNKELMLAAGVIPLLEKMISNSNS-----HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLD 574 (775)
Q Consensus 501 s~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-----~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~ 574 (775)
-.-+ .| .+++.-+-..+-.+|.+-.. ++.++-+|..|-.....-...-. ......+.+..++= ...++++
T Consensus 1025 Li~D--~k-~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~a 1100 (1702)
T KOG0915|consen 1025 LITD--SK-KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREA 1100 (1702)
T ss_pred hccC--hH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4422 22 23443333333344443222 47788888766655433222211 23344444554443 5556665
Q ss_pred HH---HHHHHhcC---C--CCChHHHHHcCcHHHHHH--hccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004073 575 AL---HALYNLST---I--PSNIPNLLSAGIISGLQS--LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 575 Al---~aL~nLs~---~--~~nk~~iv~aG~V~~Lv~--LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
|- .+|..||. + ...+..-+-+-++|.|++ .+ +.-..++.-++.+|.-|+.+..+.-.- -.+..|+.|+
T Consensus 1101 a~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll 1178 (1702)
T KOG0915|consen 1101 ADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLL 1178 (1702)
T ss_pred HHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHH
Confidence 54 44555541 1 223333333457777776 45 455778899999999999876542211 1235667776
Q ss_pred HHhcCCCHH-----------HHHHHHHHHH-HhhcCCh--HhHHHHHH-------CCCHHHHHHhhhcC-ChHHHHHHHH
Q 004073 645 TVLDTGELI-----------EQEQAVSCLF-LLCNGNE--KCCQMVLQ-------EGVIPALVSISVNG-STRGRDKAQR 702 (775)
Q Consensus 645 ~lL~~~s~~-----------~~e~Av~~L~-~Lc~~~~--~~~~~v~~-------~G~i~~Lv~Ll~~g-~~~~k~kA~~ 702 (775)
.....-+|. ....|+..+. +.++.++ +.....++ +..+|.+.+++..+ .-.+|-.++.
T Consensus 1179 ~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~ 1258 (1702)
T KOG0915|consen 1179 NAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCAS 1258 (1702)
T ss_pred HHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHH
Confidence 666543332 2333444442 2333332 11222222 24677777777765 4455666666
Q ss_pred HHHHhHhccCCC
Q 004073 703 LLMLFREQRQRD 714 (775)
Q Consensus 703 LL~~L~~~~~~~ 714 (775)
.+..|......+
T Consensus 1259 fI~~L~~r~~~e 1270 (1702)
T KOG0915|consen 1259 FISLLVQRLGSE 1270 (1702)
T ss_pred HHHHHHHHhccc
Confidence 666665444433
No 245
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=76.41 E-value=42 Score=38.28 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=93.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHcCcHHHHHHhccCC-------ChHHHHHHHHHHHHHhCCc
Q 004073 559 LVELCKGKTEHQCKLDALHALYNLSTIPS----NIPNLLSAGIISGLQSLAVPG-------DPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 559 LV~LL~~~~~~~~k~~Al~aL~nLs~~~~----nk~~iv~aG~V~~Lv~LL~~~-------~~~i~e~al~~L~nLa~~~ 627 (775)
+..++... +.+-+-+|+-..-.++.+.+ ||..+.++=+.+-+=+||..+ +...+.-++.+|...|+.+
T Consensus 16 ~~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 55565555 66667777777777876554 888899988888888888542 2344566888999999987
Q ss_pred cc--HHHHhhCCCcHHHHHHHhcCC-CHH------HHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh
Q 004073 628 AG--KEEMNSTPGLVSGLATVLDTG-ELI------EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV 690 (775)
Q Consensus 628 e~--~~~i~~~~g~I~~Lv~lL~~~-s~~------~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~ 690 (775)
+- ...++. .||.|.+++..+ +++ .-+.+-.+|..++... ...+.++..|+++.+.++-.
T Consensus 95 ElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 95 ELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHh
Confidence 63 345554 489999999743 333 6788899999998874 56778889999999985543
No 246
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.94 E-value=25 Score=42.10 Aligned_cols=182 Identities=15% Similarity=0.132 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
++.+...|.+. ..-+|+.|+-+|..+-+..+. +. ..+=+.+-.+|... .|+.+.++|...|+..- ++.
T Consensus 136 ~p~IracleHr-hsYVRrNAilaifsIyk~~~~----L~-pDapeLi~~fL~~e---~DpsCkRNAFi~L~~~D---~Er 203 (948)
T KOG1058|consen 136 MPSIRACLEHR-HSYVRRNAILAIFSIYKNFEH----LI-PDAPELIESFLLTE---QDPSCKRNAFLMLFTTD---PER 203 (948)
T ss_pred HHHHHHHHhCc-chhhhhhhheeehhHHhhhhh----hc-CChHHHHHHHHHhc---cCchhHHHHHHHHHhcC---HHH
Confidence 34445577777 788999999888887765321 11 23334445667653 68888898877666542 211
Q ss_pred h--------HHHHhhC--cHHHHHHHhcc-----CChHHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHH
Q 004073 508 K--------ELMLAAG--VIPLLEKMISN-----SNSHGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQC 571 (775)
Q Consensus 508 k--------~~i~~~G--~i~~Lv~lL~s-----~~~~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~ 571 (775)
. ..+-.-| ..-.+++++.. +..+..-...+++|-... .-..+.+ .|. |+.| +. ++.+
T Consensus 204 Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~st-ssaV~fEaa~t---lv~l--S~-~p~a 276 (948)
T KOG1058|consen 204 ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSST-SSAVIFEAAGT---LVTL--SN-DPTA 276 (948)
T ss_pred HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcC-Cchhhhhhcce---EEEc--cC-CHHH
Confidence 1 1111111 11123333322 111222333444433322 2223333 232 2332 23 6788
Q ss_pred HHHHHHHHHHhcC-CCCChHHHHHc---------------CcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc
Q 004073 572 KLDALHALYNLST-IPSNIPNLLSA---------------GIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 572 k~~Al~aL~nLs~-~~~nk~~iv~a---------------G~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e 628 (775)
.+.|+.++..|.. .++|...++-. |.+--.+.+|..++..++.+++.+..-|+++.+
T Consensus 277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 8888888888874 34555444321 112223344566777777888887777777553
No 247
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=75.86 E-value=25 Score=36.30 Aligned_cols=177 Identities=14% Similarity=0.176 Sum_probs=109.0
Q ss_pred HHHHHHHhcccccCCccccccccCc---hHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCCC--ChHHHHHcCcHHHHHHh
Q 004073 531 GAATALYLNLSFLDDAKPIIGSSHA---VPFLVELCKGK-TEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSL 604 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~---i~~LV~LL~~~-~~~~~k~~Al~aL~nLs~~~~--nk~~iv~aG~V~~Lv~L 604 (775)
-+|..+|.-++.+++.|..+.+... +-+.+.+.++. .-.-.+-.+++++..|..+++ ....+....+||.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 4566667677777877777765432 22223333322 123456677888888876654 56667778899999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCC-------CcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004073 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTP-------GLVSGLAT-VLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~-------g~I~~Lv~-lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
+..++..-+..|+-++..+-.++.|-.-+..+- ..+..++. +++.++.+.-.+++++-..||... ..+..+
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p-~aR~lL 276 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP-HARALL 276 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH-hHHHHH
Confidence 988877667778888888888888877665421 12222222 345688899999999999998764 333333
Q ss_pred HH---CCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 677 LQ---EGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 677 ~~---~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
.. .|....-..+.-..+...|++-+.++-.+.
T Consensus 277 ~~~lP~~Lrd~tfs~vl~dD~~sk~ClAqll~~ln 311 (315)
T COG5209 277 SSKLPDGLRDDTFSLVLADDGGSKECLAQLLTFLN 311 (315)
T ss_pred hccCCccccccHHHHHHHhcCChHHHHHHHHHHHH
Confidence 22 244433333333333344555555555544
No 248
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.97 E-value=26 Score=43.97 Aligned_cols=142 Identities=12% Similarity=0.059 Sum_probs=99.1
Q ss_pred chHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhcc-CCh--HHHHHHHHhcccccCCc
Q 004073 470 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN-SNS--HGAATALYLNLSFLDDA 546 (775)
Q Consensus 470 ~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~~~ 546 (775)
+.|.++...++...-.|+.+|..|.-+|..+.+-+.+ .-.-.+|.|+.++.. ++. +.+++.++.-|+.--.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~-----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE-----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4455566665443446899999999999888642221 123468999999984 444 57788777766542211
Q ss_pred cccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 547 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 547 k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
+. .-.-+.|...|.+. ++.+++.|+.+|.+|-.++-.| --|.++-+...|.+++..+.+-|=.....|+.
T Consensus 995 ---li-e~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 ---LI-EPWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ---cc-chhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 11 23457888999998 9999999999999997765322 26888899999999998887777755544544
No 249
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=74.83 E-value=1.9 Score=46.13 Aligned_cols=47 Identities=19% Similarity=0.434 Sum_probs=33.9
Q ss_pred cccccccccc--Cceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004073 284 RCPISLQLMY--DPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 330 (775)
Q Consensus 284 ~CPIs~~~m~--dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~ 330 (775)
.||+|.+.|- |-=.. +||...||-|...--+.-+..||.||..++..
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 3999999884 44344 57888888885443334467899999988764
No 250
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=74.71 E-value=1e+02 Score=32.84 Aligned_cols=207 Identities=16% Similarity=0.104 Sum_probs=123.4
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhh
Q 004073 435 LNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA 514 (775)
Q Consensus 435 L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~ 514 (775)
|.+. +...|.+|+..|......-+... ....-+..|+.++.+.. .|......++.+|..|.. ... ...
T Consensus 8 Ltse-d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~-~~~-----~~~ 75 (262)
T PF14500_consen 8 LTSE-DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVK-MKN-----FSP 75 (262)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHh-CcC-----CCh
Confidence 5565 88899999999988876544221 33344788888887644 466666556777766642 111 111
Q ss_pred C-cHHHHHHHhccCCh-------HHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 515 G-VIPLLEKMISNSNS-------HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 515 G-~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
+ +...+-.+.+.-+. +..+..++..|..+ +...+.. .+.+..++++++.+.||+....+...+..+..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1 22222233332221 33455555544332 2233322 46788999999877899999999999988875
Q ss_pred CCCChHHHHHcCcHHHHHHhcc---------C-CCh-HH-HHH-HHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCC
Q 004073 585 IPSNIPNLLSAGIISGLQSLAV---------P-GDP-MW-TEK-SLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE 651 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~---------~-~~~-~i-~e~-al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s 651 (775)
.-+. ...++-|.+.+. . +++ .+ .+. ..+....|++++ .+. +-++|.|++.|.+++
T Consensus 154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa--~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 154 EFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFA--PFAFPLLLEKLDSTS 221 (262)
T ss_pred hccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhH--HHHHHHHHHHHcCCC
Confidence 4442 334444555432 1 121 22 223 333333344433 232 358999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 004073 652 LIEQEQAVSCLFLLCN 667 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~ 667 (775)
+.+|..++.+|...+.
T Consensus 222 ~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIE 237 (262)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 251
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=74.54 E-value=79 Score=36.99 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=127.6
Q ss_pred cCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC-C----------
Q 004073 437 EGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN-N---------- 505 (775)
Q Consensus 437 s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-~---------- 505 (775)
.+++.++|.+|...+..+..-....-....+.-....+.++.++ .+.++...|+..-.-++... +
T Consensus 231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks----~nd~va~qavEfWsticeEeid~~~e~~~~pe 306 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS----QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE 306 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence 34488999999999988886555444455555444555667776 56666666654332222100 0
Q ss_pred ---chhH--HHHhhCcHHHHHHHhccCC------hH---HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHH
Q 004073 506 ---RNKE--LMLAAGVIPLLEKMISNSN------SH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQC 571 (775)
Q Consensus 506 ---~nk~--~i~~~G~i~~Lv~lL~s~~------~~---~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~ 571 (775)
.|-. .-.-++++|-|+++|.... .+ ..|.+.|...+....+ .|.+. ++...=.-++++ +..-
T Consensus 307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~-~w~n 382 (858)
T COG5215 307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSE-SWAN 382 (858)
T ss_pred CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCc-hhhh
Confidence 1111 1112458999999997622 11 3344455444443322 23322 333333445666 8888
Q ss_pred HHHHHHHHHHhcCCCC--ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-
Q 004073 572 KLDALHALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD- 648 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~--nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~- 648 (775)
++.|..|+...-..+. ....+| ..++|.+..++.+...-+++.+++.+..++.+- ..++.-.|-++..+....
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~li 458 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLI 458 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHh
Confidence 9999999988764332 233333 458888888888777777888889998887632 222222233333333322
Q ss_pred --CCCHHHHHHHHHHHHHhhcC
Q 004073 649 --TGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 649 --~~s~~~~e~Av~~L~~Lc~~ 668 (775)
...|..--++.+...++..+
T Consensus 459 Gl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 459 GLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred hhhccchHHhhhHHHHHhHHHh
Confidence 24567777777777777654
No 252
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=1.9 Score=46.99 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=36.5
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
+.|..-.|-||.+=..+-|.++|||+.| |+.-.. ....||+|++..
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 4566778999999999999999999988 654332 355699998764
No 253
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.36 E-value=44 Score=39.58 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=99.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhh---ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG---ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 431 Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~---~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
.+..+..- +++.+.=|+..||.+++...-+-..+- ...++..++..+. .++.-|.-++++|.|+ ..+..+
T Consensus 549 ~l~~l~~w-p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~-f~~~~g 621 (745)
T KOG0301|consen 549 ALAILLQW-PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANL-FSNPAG 621 (745)
T ss_pred HHHHHhcC-CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHh-ccCHHH
Confidence 34455555 789999999999999987655443332 1345666666665 3677888899999999 456767
Q ss_pred hHHHHhhCcHHHHHHHh---ccCCh--HHHHHHHH-hcccc--cCCccccccccCchHHHHHhh----cCCCCHHHHHHH
Q 004073 508 KELMLAAGVIPLLEKMI---SNSNS--HGAATALY-LNLSF--LDDAKPIIGSSHAVPFLVELC----KGKTEHQCKLDA 575 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL---~s~~~--~~~AaaaL-~~Ls~--~~~~k~~I~~~g~i~~LV~LL----~~~~~~~~k~~A 575 (775)
+..+... ...+...+ ++++. ...|.+++ +|++. ...+-. .|+.+.|..++ ..-.+.++.-.+
T Consensus 622 ~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~ 695 (745)
T KOG0301|consen 622 RELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRL 695 (745)
T ss_pred HHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHH
Confidence 7766654 22222222 23332 23344444 45543 222222 23444444333 322245677788
Q ss_pred HHHHHHhcCCCCChHHHHHcCcHHHHHHhcc
Q 004073 576 LHALYNLSTIPSNIPNLLSAGIISGLQSLAV 606 (775)
Q Consensus 576 l~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~ 606 (775)
+.||.+|+..+.+..++...--|..++.-+.
T Consensus 696 l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 696 LVALGTLMTVDASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHHHhhccccHHHHHHHHhcCHHHHHHHHH
Confidence 9999999998888888877666666666554
No 254
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.12 E-value=35 Score=35.25 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=119.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchh--------ccCCCHHHHHHHHHHHH
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESA--------VCERNSYAQEIGAMALF 498 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~--------~~~~d~~~qe~A~~aL~ 498 (775)
+-..+..+..+ ++.+| |+.+|..--+..++.--.+-. .|..-.|++-+-+. .+.....-..+|+..|-
T Consensus 49 vy~wicqlv~g-~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQ 125 (315)
T COG5209 49 VYSWICQLVVG-NPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQ 125 (315)
T ss_pred HHHHHHHHhcC-CHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHH
Confidence 44455666677 66655 777776666655554433333 46555555433221 00111222355555566
Q ss_pred HhhccCCchhHHHHhhCcHHHHHHHhcc---CCh----HHHHHHHHhcccccCCc--cccccccCchHHHHHhhcCCCCH
Q 004073 499 NLAVNNNRNKELMLAAGVIPLLEKMISN---SNS----HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEH 569 (775)
Q Consensus 499 nLs~~~~~nk~~i~~~G~i~~Lv~lL~s---~~~----~~~AaaaL~~Ls~~~~~--k~~I~~~g~i~~LV~LL~~~~~~ 569 (775)
-++ ++++.|..++++..--.|-.+|.. ... +..+.+++..|..+++- -..+....++|.+++++..| +.
T Consensus 126 cla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g-SE 203 (315)
T COG5209 126 CLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG-SE 203 (315)
T ss_pred HHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh-hH
Confidence 665 478888888877643334444433 222 35588888777766542 11233478999999999999 77
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHH--------cCcHHHHHH-hccCCChHHHHHHHHHHHHHhCCcccHHHH
Q 004073 570 QCKLDALHALYNLSTIPSNIPNLLS--------AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEM 633 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~~nk~~iv~--------aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~~e~~~~i 633 (775)
-.+..|+-++..+-.++..-..+.+ ..++..++. +.+.+...+...++.+-..||..+..|..+
T Consensus 204 lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 204 LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 7777777777766665554333321 223344444 344566777788888888888888777755
No 255
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=74.12 E-value=87 Score=34.64 Aligned_cols=159 Identities=12% Similarity=0.011 Sum_probs=113.7
Q ss_pred ccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChH-----HHHHc--CcHHHHHHhccCCChHHHHHHHHHHH
Q 004073 550 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIP-----NLLSA--GIISGLQSLAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 550 I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~-----~iv~a--G~V~~Lv~LL~~~~~~i~e~al~~L~ 621 (775)
+...+.+..|+..|..- +.+.++++.....++.... +++. .+... .++..|+.--. ++.+.-.+-.+|.
T Consensus 72 i~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlR 148 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLR 148 (335)
T ss_dssp HHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHH
Confidence 33468899999999988 9999999999999998653 3332 22221 23333443333 4445577888888
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC---CHHHHHHhhhcCChHHHH
Q 004073 622 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG---VIPALVSISVNGSTRGRD 698 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G---~i~~Lv~Ll~~g~~~~k~ 698 (775)
..+..+.-...+.. ...+..+.+.+..++=++...|..++-.|-..........+... .+...-.|+.+++--+|+
T Consensus 149 ec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 149 ECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 88887766666666 47889999999999999999999999887766555555555543 566667899999999999
Q ss_pred HHHHHHHHhHhccC
Q 004073 699 KAQRLLMLFREQRQ 712 (775)
Q Consensus 699 kA~~LL~~L~~~~~ 712 (775)
.+.+||.-+--.+.
T Consensus 228 qslkLL~ellldr~ 241 (335)
T PF08569_consen 228 QSLKLLGELLLDRS 241 (335)
T ss_dssp HHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHchh
Confidence 99999976654443
No 256
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.12 E-value=1.9 Score=46.43 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=39.1
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
++=.||||--=--..|..||||.-|..||.+++-. .+.|-.|+...
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 78899999988888889999999999999999864 56787776443
No 257
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.74 E-value=1.1e+02 Score=37.08 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=130.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
-.+|..+|.+. ....+++|...|-.+...+.+. ....|..|+...+ .|.++..-.---|+..|.. ..+
T Consensus 37 ~~dL~~lLdSn-kd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVas----kn~EVKkLVyvYLlrYAEe-qpd 104 (968)
T KOG1060|consen 37 HDDLKQLLDSN-KDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVAS----KNIEVKKLVYVYLLRYAEE-QPD 104 (968)
T ss_pred hHHHHHHHhcc-ccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhc----cCHHHHHHHHHHHHHHhhc-CCC
Confidence 44778888887 6677888887776665544432 2356778887777 7888887766666666642 222
Q ss_pred hHHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-
Q 004073 508 KELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP- 586 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~- 586 (775)
-.. =-|..+-+-|..++. .--+++|..|+.. |..+...=.+-++-+...+. ++-+++.|+.||-.|=+.+
T Consensus 105 LAL----LSIntfQk~L~DpN~-LiRasALRvlSsI---Rvp~IaPI~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 105 LAL----LSINTFQKALKDPNQ-LIRASALRVLSSI---RVPMIAPIMLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred cee----eeHHHHHhhhcCCcH-HHHHHHHHHHHhc---chhhHHHHHHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCCh
Confidence 111 124455556666654 2223334434432 22222122223333445566 8999999999999996544
Q ss_pred CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 587 SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 587 ~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
+.+.++++ .+=.||.+.++.+.-.|+.+...+|- +.-+-|. +-...|..+|...+...|-..+..|..-|
T Consensus 176 e~k~qL~e-----~I~~LLaD~splVvgsAv~AF~evCP--erldLIH---knyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 176 EQKDQLEE-----VIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLIH---KNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred hhHHHHHH-----HHHHHhcCCCCcchhHHHHHHHHhch--hHHHHhh---HHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 44554433 34447888888888888888887763 4334433 34688888888888888888888886666
Q ss_pred c
Q 004073 667 N 667 (775)
Q Consensus 667 ~ 667 (775)
+
T Consensus 246 R 246 (968)
T KOG1060|consen 246 R 246 (968)
T ss_pred H
Confidence 4
No 258
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.26 E-value=59 Score=40.50 Aligned_cols=254 Identities=17% Similarity=0.154 Sum_probs=149.8
Q ss_pred HHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccC
Q 004073 448 VEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS 527 (775)
Q Consensus 448 l~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~ 527 (775)
-..|-.+.|++.+|...+.++.++..++.+|-+. .-+-.-+..+.-|...+. +. +.+..+-.++..|++|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind------ehRSslLrivscLitvdp--kq--vhhqelmalVdtLksg 732 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND------EHRSSLLRIVSCLITVDP--KQ--VHHQELMALVDTLKSG 732 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech------HHHHHHHHHHHHHhccCc--cc--ccHHHHHHHHHHHHhc
Confidence 3467788899999999999998888888888551 111111222222222111 11 2334556778888775
Q ss_pred ChH--------------HHHHHHHhccc-ccCCccccccccCchHHHHHhhcC---------CCCHHHHHHHHHHHHHh-
Q 004073 528 NSH--------------GAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKG---------KTEHQCKLDALHALYNL- 582 (775)
Q Consensus 528 ~~~--------------~~AaaaL~~Ls-~~~~~k~~I~~~g~i~~LV~LL~~---------~~~~~~k~~Al~aL~nL- 582 (775)
-.+ ...++++..+. .+...+..+++.++...|...|.. ..+.-.-..-...|+.+
T Consensus 733 mvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlf 812 (2799)
T KOG1788|consen 733 MVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLF 812 (2799)
T ss_pred ceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHH
Confidence 321 22445555443 344567788888888888777631 11333333344455543
Q ss_pred ----cCCCCChHHHH-------------HcC---------cHHHHHHh----ccCCChHHHHHHHHHHHHHhC------C
Q 004073 583 ----STIPSNIPNLL-------------SAG---------IISGLQSL----AVPGDPMWTEKSLAVLLNLAA------S 626 (775)
Q Consensus 583 ----s~~~~nk~~iv-------------~aG---------~V~~Lv~L----L~~~~~~i~e~al~~L~nLa~------~ 626 (775)
|.++.|+..+- +.| +|..|.++ +..+...--..|++.+-.+-. .
T Consensus 813 TlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavnt 892 (2799)
T KOG1788|consen 813 TLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNT 892 (2799)
T ss_pred HHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeecc
Confidence 35566765532 233 22233221 111111100122233322211 1
Q ss_pred c-----ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhh---hcCChHHHH
Q 004073 627 A-----AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS---VNGSTRGRD 698 (775)
Q Consensus 627 ~-----e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll---~~g~~~~k~ 698 (775)
+ ..++.|.. .|++..|+..+....|+.|-.-+..|-.+++.++.+....-..|.+..|+++. .+|+...--
T Consensus 893 PsGqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLs 971 (2799)
T KOG1788|consen 893 PSGQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLS 971 (2799)
T ss_pred CCCCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhh
Confidence 1 13445665 48999999998888999999999999999998888888888889999887664 456777777
Q ss_pred HHHHHHHHhHhccC
Q 004073 699 KAQRLLMLFREQRQ 712 (775)
Q Consensus 699 kA~~LL~~L~~~~~ 712 (775)
.|.+++.+|.-.+-
T Consensus 972 halkIvemLgayrl 985 (2799)
T KOG1788|consen 972 HALKIVEMLGAYRL 985 (2799)
T ss_pred ccHHHHHHHhhccC
Confidence 77777777765543
No 259
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.94 E-value=80 Score=38.67 Aligned_cols=230 Identities=18% Similarity=0.143 Sum_probs=125.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+.+...+..+... ...+|-.|+..|+.+.+.- +....+...+++...+..|+. .|+-+--+|+..+.-|+-
T Consensus 727 e~~qeai~sl~d~-qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkd----edsyvyLnaI~gv~~Lce--- 797 (982)
T KOG4653|consen 727 EPLQEAISSLHDD-QVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKD----EDSYVYLNAIRGVVSLCE--- 797 (982)
T ss_pred HHHHHHHHHhcCC-cccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcc----cCceeeHHHHHHHHHHHH---
Confidence 4455556666665 6778888888888888643 334445567788888888877 666666666665555542
Q ss_pred chhHHHHhhCcHHHHHHHhccCChHHHHHHHHhccccc--CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~--~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
+.....+|.+...-.+.. .. .+.+-.+| +++.+++..-.+.-.+..| .|.+.
T Consensus 798 -----vy~e~il~dL~e~Y~s~k-------------~k~~~d~~lkVG-----Eai~k~~qa~Gel~~~y~~--~Li~t- 851 (982)
T KOG4653|consen 798 -----VYPEDILPDLSEEYLSEK-------------KKLQTDYRLKVG-----EAILKVAQALGELVFKYKA--VLINT- 851 (982)
T ss_pred -----hcchhhHHHHHHHHHhcc-------------cCCCccceehHH-----HHHHHHHHHhccHHHHHHH--HHHHH-
Confidence 123345555555332211 11 12333333 5555555432133333322 22222
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCL 662 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L 662 (775)
.+..+.+++..++..++++|++||.--.++..-.-+ .++..++.+.. ++++-+|..|+..+
T Consensus 852 -----------------fl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li 913 (982)
T KOG4653|consen 852 -----------------FLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLL 913 (982)
T ss_pred -----------------HHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHH
Confidence 233344556667788888888887643322111111 35666666666 46788888888888
Q ss_pred HHhhcCChHhHHHHHHCC---CHHHHHHhh-hcCChHHHHHHHHHHHHhH
Q 004073 663 FLLCNGNEKCCQMVLQEG---VIPALVSIS-VNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G---~i~~Lv~Ll-~~g~~~~k~kA~~LL~~L~ 708 (775)
..+-.+-.+..-.+.++- ....+.... .+.++.+|-.|...|..+.
T Consensus 914 ~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 914 AELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 887765433323333222 222333333 3455666777776555444
No 260
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=72.89 E-value=16 Score=35.70 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
.+.+..++..+-...+.+....++..+..+.-..++....+.. .|+++.++.+... ...+...|..++.+|..-+.
T Consensus 41 ~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~--~~~~~~~~~~~lell~aAc~- 117 (157)
T PF11701_consen 41 KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR--KSKDRKVQKAALELLSAACI- 117 (157)
T ss_dssp HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH---CTS-HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHHc-
Confidence 4567777775543324567888999999998888887776654 8999999999981 11688888888877766653
Q ss_pred CCchhHHHHhhCcHHHHHHHhccCC
Q 004073 504 NNRNKELMLAAGVIPLLEKMISNSN 528 (775)
Q Consensus 504 ~~~nk~~i~~~G~i~~Lv~lL~s~~ 528 (775)
++++...+...+++.|...++.+.
T Consensus 118 -d~~~r~~I~~~~~~~L~~~~~~~~ 141 (157)
T PF11701_consen 118 -DKSCRTFISKNYVSWLKELYKNSK 141 (157)
T ss_dssp -SHHHHHCCHHHCHHHHHHHTTTCC
T ss_pred -cHHHHHHHHHHHHHHHHHHHcccc
Confidence 455555666778899999996544
No 261
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.06 E-value=70 Score=39.86 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhcC-----------CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCC
Q 004073 569 HQCKLDALHALYNLST-----------IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTP 637 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~-----------~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~ 637 (775)
...-..|+..++.+-. ....+.++..+|++..|+..+-...+.++-+-+..|..++.....-.....+.
T Consensus 870 LtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~ 949 (2799)
T KOG1788|consen 870 LTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSA 949 (2799)
T ss_pred hhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcc
Confidence 3334456666666521 12357788899999999996555567788889999999988555444555557
Q ss_pred CcHHHHHHHhc---CCCHHHHHHHHHHHHHhhc
Q 004073 638 GLVSGLATVLD---TGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 638 g~I~~Lv~lL~---~~s~~~~e~Av~~L~~Lc~ 667 (775)
|||..|++++. +|+.-.-.+|..|..-||.
T Consensus 950 gcvellleIiypflsgsspfLshalkIvemLga 982 (2799)
T KOG1788|consen 950 GCVELLLEIIYPFLSGSSPFLSHALKIVEMLGA 982 (2799)
T ss_pred cHHHHHHHHhhhhhcCCchHhhccHHHHHHHhh
Confidence 99999999986 4666677888888888874
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.77 E-value=20 Score=34.50 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
.+.+..+..+|.++ ++.+|..|+..|..+.++. ......++..+++..|++++.. ..++.++..++..+.+.+.
T Consensus 40 k~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHH
Confidence 56777888899998 9999999999999999984 5577788899999999999975 2678899999988888763
No 263
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=71.03 E-value=97 Score=34.88 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhc---hhc---cCCCHHHHHHHHHHHH
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE---SAV---CERNSYAQEIGAMALF 498 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~---s~~---~~~d~~~qe~A~~aL~ 498 (775)
++....++.-|..+....-+...++.+|.|+.+..-. .-+-..-.+..|+.+-. +.. ...|..+...+..+|.
T Consensus 44 ~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L-~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLc 122 (532)
T KOG4464|consen 44 KELGERIFEVLENGEPLTHRVVCLETVRILSRDKDGL-EPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLC 122 (532)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccccc-ccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHH
Confidence 4556666777777755667778899999998763210 00111111222222221 110 0135578888999999
Q ss_pred HhhccCCchhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhccccc-CCcccc-ccccCchHHHHHhhcCC--C
Q 004073 499 NLAVNNNRNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFL-DDAKPI-IGSSHAVPFLVELCKGK--T 567 (775)
Q Consensus 499 nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~-~~~k~~-I~~~g~i~~LV~LL~~~--~ 567 (775)
|+..++...+....+......+.+.+.+.-. ..-=+..|+-|... .+.+.. +...+|++.+.+.|.+. .
T Consensus 123 Nlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgi 202 (532)
T KOG4464|consen 123 NLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGI 202 (532)
T ss_pred HHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccC
Confidence 9988777777777777766666665533211 12234445544432 234444 44478899999988753 0
Q ss_pred ------------CHHHHHHHHHHHHHhcCCC
Q 004073 568 ------------EHQCKLDALHALYNLSTIP 586 (775)
Q Consensus 568 ------------~~~~k~~Al~aL~nLs~~~ 586 (775)
.......|+++++|+..+.
T Consensus 203 dse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 203 DSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1235566888899997544
No 264
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.84 E-value=3e+02 Score=35.10 Aligned_cols=175 Identities=14% Similarity=0.114 Sum_probs=83.2
Q ss_pred HHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHHhccC
Q 004073 531 GAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVP 607 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~ 607 (775)
..+..+|..++..+........ ......|.+-+++- +..++..++.+|..|-.... -...++..-+.+.++.+ .+
T Consensus 672 kK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke 749 (1176)
T KOG1248|consen 672 KKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KE 749 (1176)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-cc
Confidence 4466666666555333333322 12333444444444 55677777777766653332 12222222233333333 55
Q ss_pred CChHHHHHHHHHHHHHhC----CcccHHHHhhCCCcHHHHHHHhcCC--CHHHHHHH--HHHHHHhhcCChHhHHHHHHC
Q 004073 608 GDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTG--ELIEQEQA--VSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 608 ~~~~i~e~al~~L~nLa~----~~e~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~A--v~~L~~Lc~~~~~~~~~v~~~ 679 (775)
.+...+..+...|..++. ..+|.+. .+..|...+.+|..| .....-.| +-++..+............-+
T Consensus 750 ~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 750 VNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred ccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 666677888888888873 1122111 012444555555433 22222222 222233322111111111112
Q ss_pred CCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 680 GVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 680 G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+++..+...+.+++..++..|...++.+...
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 3344445667788888888888888776543
No 265
>PF04641 Rtf2: Rtf2 RING-finger
Probab=70.83 E-value=4.2 Score=43.20 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.6
Q ss_pred CccccccccccccCceec-CCCCccchHHHHHHHhcC
Q 004073 281 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDG 316 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~ 316 (775)
.-+.|+||++.+.+||+. .-|+-|.+..|-.|+-..
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 357999999999999976 469999999999999753
No 266
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=70.75 E-value=74 Score=35.84 Aligned_cols=163 Identities=10% Similarity=0.099 Sum_probs=105.1
Q ss_pred HHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc---C-------------------CC----HHHHHHHHHHHHH
Q 004073 446 NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC---E-------------------RN----SYAQEIGAMALFN 499 (775)
Q Consensus 446 ~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~---~-------------------~d----~~~qe~A~~aL~n 499 (775)
.|+..|-.+.......-..+.+.|++..+++.|...+. . .+ +--|...+..|++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 35555666665555555566777888888777753211 0 01 1123444445444
Q ss_pred hh---cc-CCch---hHHHHh-hCcHHHHHHHhccCCh-----HHHHHHHHhcccccCCc-cccccccCchHHHHHhhc-
Q 004073 500 LA---VN-NNRN---KELMLA-AGVIPLLEKMISNSNS-----HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCK- 564 (775)
Q Consensus 500 Ls---~~-~~~n---k~~i~~-~G~i~~Lv~lL~s~~~-----~~~AaaaL~~Ls~~~~~-k~~I~~~g~i~~LV~LL~- 564 (775)
+- .. .... -.-+++ ...+..|..++++... ...|+.++..+..++-. -..|.+.|.++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 31 22 1222 222344 4466677777777543 35566667666665544 446666899999999988
Q ss_pred CC--CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC
Q 004073 565 GK--TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG 608 (775)
Q Consensus 565 ~~--~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~ 608 (775)
.+ .+.++....-.+|..||.+.....++.+.+.++.+++++.+.
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 54 467788888888999999999999999999999999988764
No 267
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=70.28 E-value=22 Score=43.48 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=95.1
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH--cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-c
Q 004073 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-G 629 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~ 629 (775)
...+|.|+...... ....|..=+.+|.++-.+-.- ..+.. .-..|.|++-|.-.+..++-.++.+|.-+..-.. -
T Consensus 866 ~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 46899999999865 666788888889888764332 33332 4577778887777777776777777776654322 2
Q ss_pred HHHHhhCCCcHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHH
Q 004073 630 KEEMNSTPGLVSGLATVLDTGE---LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~~~s---~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~ 702 (775)
...-+. -.||.++.+=++.+ -.+++-|+.+|..|...-|...-.--+..++..|...+.+..--+|+.|..
T Consensus 944 ~t~~~~--Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 944 QTEHLS--TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred chHHHh--HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 222232 35666666655443 578999999999999843322222223346667777777766667777764
No 268
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=70.23 E-value=2e+02 Score=33.85 Aligned_cols=176 Identities=9% Similarity=0.012 Sum_probs=88.9
Q ss_pred HHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCc-
Q 004073 521 EKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGI- 597 (775)
Q Consensus 521 v~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~- 597 (775)
...|.+...+ ..|+.++..++..+-.-..- .|.+..+|....++....++.+++.++.+.|....-...+-..++
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~w--p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~i 177 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLW--PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVI 177 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccccc--hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHH
Confidence 3445555544 34555555444322100000 355666666666664567899999999999966554333333333
Q ss_pred HHHHHH-hccC-CChHHHHHHHHHHHH-HhC------CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004073 598 ISGLQS-LAVP-GDPMWTEKSLAVLLN-LAA------SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 598 V~~Lv~-LL~~-~~~~i~e~al~~L~n-La~------~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
+-.++. -++. .+..++-.++.+|.+ |-. .++.|.-+ ....++.-...+..++..|.++|..|-.-
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~------mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF------MQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh------heeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 333333 3433 456677778888877 211 11122222 22223333345556666666666655443
Q ss_pred ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 669 NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 669 ~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
.-...+-.++.-....+...+.+.++++.-.|...-
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfW 287 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFW 287 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 223333333333333333555555555555555544
No 269
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=69.47 E-value=1.1e+02 Score=38.01 Aligned_cols=181 Identities=15% Similarity=0.087 Sum_probs=106.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchh
Q 004073 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 508 (775)
Q Consensus 429 ~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk 508 (775)
..|...+.+. +|..+.+|++.+.....+.. .....|....+..++.....+.+..+...|+..|-.++.. .+
T Consensus 256 ~~l~t~~~s~-~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~---lr 327 (815)
T KOG1820|consen 256 KNLETEMLSK-KWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK---LR 327 (815)
T ss_pred hHHHHhhhcc-chHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh---cc
Confidence 3445566666 99999999999998887643 2223333333333333222224666666677777666532 22
Q ss_pred HHHH--hhCcHHHHHHHhccCC--hHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 509 ELML--AAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 509 ~~i~--~~G~i~~Lv~lL~s~~--~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
.... ..+++|.|..-+..-. .+..+..++-.... .......++.+..+++++ +++.+..+...+-....
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGK-NPQIKGECLLLLDRKLR 400 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHh
Confidence 2222 3457777777765432 23444444332211 111245678888999999 99988876666655542
Q ss_pred C-C-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 585 I-P-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 585 ~-~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
. . .+...-.-.++++.++....+.+..++..|..++..+-
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2 2 23222223457777888888888888888887776553
No 270
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.71 E-value=24 Score=44.35 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=102.3
Q ss_pred CchHHHHHhhcCC---CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhcc-CCChHHHHHHHHHHHHHhCCccc
Q 004073 554 HAVPFLVELCKGK---TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAG 629 (775)
Q Consensus 554 g~i~~LV~LL~~~---~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~-~~~~~i~e~al~~L~nLa~~~e~ 629 (775)
...|.++++.++. .+++.+.+|.-||+.+..-.. .+. +-.+|.|+..|. ++++.++-.++.+|+-|+-.-.+
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fc-es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHH-HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 3567777777543 378999999999998864221 111 235677888775 67888888888888887764433
Q ss_pred HHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 630 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
- + +-.-+.|...|...++.+|+.|+-+|.+|-..+ ++.-.|.++....++.+++.+++.-|....+-|
T Consensus 995 l---i--e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 L---I--EPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred c---c--chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 2 2 234567788888999999999999999987654 455578889999999999999999999444433
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.56 E-value=30 Score=32.68 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~-nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
.+.+..+-.+|.++ ++.+|..|+..|-.+.++... .+..++...++..|++++... ...+..++..++..|.+.+.
T Consensus 36 k~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 46677778899998 999999999999999998755 677788878888899999763 22578899999988888764
No 272
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=68.53 E-value=17 Score=42.62 Aligned_cols=97 Identities=22% Similarity=0.361 Sum_probs=59.2
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH
Q 004073 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~ 631 (775)
..+|.++++|+.+. +..++..|++.|..+|.+ ++...++ +..|++||..+++.-...+-.+|..|-..+
T Consensus 58 ~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d---- 127 (556)
T PF05918_consen 58 EEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD---- 127 (556)
T ss_dssp HHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC----
Confidence 35789999999998 999999999999999975 4566664 467899998776554444444444443211
Q ss_pred HHhhCCCcHHHHHHHhc---CCCHHHHHHHHHHHH
Q 004073 632 EMNSTPGLVSGLATVLD---TGELIEQEQAVSCLF 663 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~---~~s~~~~e~Av~~L~ 663 (775)
..+.+..|...+. .+++.++|.++..|.
T Consensus 128 ----~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 128 ----PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ----HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1133444555554 567778888887663
No 273
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=67.72 E-value=2.3 Score=50.35 Aligned_cols=65 Identities=18% Similarity=0.440 Sum_probs=50.1
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHh--cCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLS--DGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 345 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~--~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~ 345 (775)
....||||.+...+|+.+.|-|.||+.|+..-|. .+...||+|+.......+.--..-.++++++
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 4678999999999999999999999999998654 4467899998665544444444556666644
No 274
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=67.48 E-value=15 Score=36.48 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=54.8
Q ss_pred HHhhCCCcHHHHHHHhcC---------CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHH
Q 004073 632 EMNSTPGLVSGLATVLDT---------GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~---------~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~ 702 (775)
.++.. ||+..|+++|.. ........++.+|..|+.........+...+++..|+..+.+.+.++|.-|..
T Consensus 102 ~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 102 EFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 44443 667777776652 34567888999999999877544444445689999999999999999999999
Q ss_pred HHHHhH
Q 004073 703 LLMLFR 708 (775)
Q Consensus 703 LL~~L~ 708 (775)
+|..+.
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997764
No 275
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=67.23 E-value=6.4 Score=44.56 Aligned_cols=152 Identities=20% Similarity=0.132 Sum_probs=83.6
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc---cCCchhHHHHhhCcHH-HHHHHhcc----CC--h--HHHHHHH
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAV---NNNRNKELMLAAGVIP-LLEKMISN----SN--S--HGAATAL 536 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~---~~~~nk~~i~~~G~i~-~Lv~lL~s----~~--~--~~~Aaaa 536 (775)
.+...++..|.+ ..-..|+.+++++.|++- .+-.+.....+ .++. .|..++.. .. + +.+|..+
T Consensus 433 ~aa~~il~sl~d----~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~e-R~sg~ll~~~~~~A~~~~Ad~dkV~~navra 507 (728)
T KOG4535|consen 433 DAANAILMSLED----KSLNVRAKAAWSLGNITDALIVNMPTPDSFQE-RFSGLLLLKMLRSAIEASADKDKVKSNAVRA 507 (728)
T ss_pred HHHHHHHHHhhh----HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 344455555544 456788999999999851 01111111111 1111 12222221 11 1 3668888
Q ss_pred HhcccccCC--ccccccc--cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH-cC-cHHHHHHhccC-CC
Q 004073 537 YLNLSFLDD--AKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AG-IISGLQSLAVP-GD 609 (775)
Q Consensus 537 L~~Ls~~~~--~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~-aG-~V~~Lv~LL~~-~~ 609 (775)
|.|+...-+ -+-..++ .|.+..+.+-.-......++-+|+.+|.||-.++.-+-+=.+ +| +.+.|..|+.+ .+
T Consensus 508 LgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 508 LGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN 587 (728)
T ss_pred HhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc
Confidence 877765322 1111111 344444443322223778999999999999887765333222 33 56677777754 67
Q ss_pred hHHHHHHHHHHHHHhC
Q 004073 610 PMWTEKSLAVLLNLAA 625 (775)
Q Consensus 610 ~~i~e~al~~L~nLa~ 625 (775)
..++..|+++|..-..
T Consensus 588 FKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 588 FKVRIRAAAALSVPGK 603 (728)
T ss_pred ceEeehhhhhhcCCCC
Confidence 8888999999876554
No 276
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=65.88 E-value=2.7e+02 Score=35.25 Aligned_cols=226 Identities=17% Similarity=0.148 Sum_probs=133.3
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCC---hHHHHHHHHhcccccCC
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDD 545 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~---~~~~AaaaL~~Ls~~~~ 545 (775)
++|+.|+..|++ .|..+.-.|+.-+..++...+ .. ....+|..++.++.-.. ....|+-+|..|+.-.
T Consensus 341 ~vie~Lls~l~d----~dt~VrWSaAKg~grvt~rlp---~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG- 411 (1133)
T KOG1943|consen 341 FVIEHLLSALSD----TDTVVRWSAAKGLGRVTSRLP---PE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG- 411 (1133)
T ss_pred HHHHHHHHhccC----CcchhhHHHHHHHHHHHccCc---HH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-
Confidence 556666666666 788899999999988865333 21 23346667777555433 2456777776666421
Q ss_pred ccccccc--cCchHHHHHhhcCC-------CCHHHHHHHHHHHHHhcCCCC-C--hHHHHHcCcHHHH-HHhccCCChHH
Q 004073 546 AKPIIGS--SHAVPFLVELCKGK-------TEHQCKLDALHALYNLSTIPS-N--IPNLLSAGIISGL-QSLAVPGDPMW 612 (775)
Q Consensus 546 ~k~~I~~--~g~i~~LV~LL~~~-------~~~~~k~~Al~aL~nLs~~~~-n--k~~iv~aG~V~~L-v~LL~~~~~~i 612 (775)
..+.. ..++|.+++-|.-+ ....++.+|+-+.|.++...+ + +. ++.. ..+.| +..+.+.+..+
T Consensus 412 --lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~-L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 412 --LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQS-LASALLIVALFDREVNC 487 (1133)
T ss_pred --CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHH-HHHHHHHHHhcCchhhH
Confidence 11111 24566666555311 135689999999999874322 2 22 2222 22333 33556777788
Q ss_pred HHHHHHHHHHHhCCc----ccHH----------------------HHhhCCCcHHHHHHHhcC-----CCHHHHHHHHHH
Q 004073 613 TEKSLAVLLNLAASA----AGKE----------------------EMNSTPGLVSGLATVLDT-----GELIEQEQAVSC 661 (775)
Q Consensus 613 ~e~al~~L~nLa~~~----e~~~----------------------~i~~~~g~I~~Lv~lL~~-----~s~~~~e~Av~~ 661 (775)
+..|.++|-....-. .|-. .|..-+|....+++-|-+ =++.++|.|+.+
T Consensus 488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 888888877665421 1111 122234555566655542 378999999999
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHH----HHHHHHHhHhcc
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDK----AQRLLMLFREQR 711 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~k----A~~LL~~L~~~~ 711 (775)
|..|....+++ ...+..++|+.-...++...+.. +..++..++...
T Consensus 568 L~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 568 LHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred HHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence 99988655433 34567888886655565555543 334555555554
No 277
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=65.64 E-value=2.7e+02 Score=32.88 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 428 YQDFLNVLNEGE---NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 428 i~~Ll~~L~s~~---~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..++++.+.+.. +......-++.+-.+.+.+.+.+.. +..+|.+...+.-..++..++.++..++..+
T Consensus 225 ~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q---------~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n 295 (898)
T COG5240 225 QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQ---------LRPFLNSWLSDKFEMVFLEAARAVCALSEEN 295 (898)
T ss_pred HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHH---------HHHHHHHHhcCcchhhhHHHHHHHHHHHHhc
Confidence 445566555442 2222333445555666666655443 4455554443355788989999999887422
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL 543 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~ 543 (775)
--...+ ..++..|-.+|.+... +-.|+.+|-.|+..
T Consensus 296 --v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 296 --VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred --cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 011111 2355666666766553 56688888878764
No 278
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.23 E-value=5.5 Score=43.03 Aligned_cols=51 Identities=22% Similarity=0.411 Sum_probs=41.3
Q ss_pred ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCC--C---CCCcccHHHHHHHHHH
Q 004073 295 PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP--H---LCLTPNYCVKGLIASW 345 (775)
Q Consensus 295 PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~--~---~~l~pn~~l~~~i~~~ 345 (775)
|=++.||||+|-.|+.+-+..+...||.||++.. . ..|..|+.+-..|+..
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4444599999999999988887888999998842 2 4588899998888776
No 279
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=64.91 E-value=1e+02 Score=32.11 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=85.2
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 634 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~ 634 (775)
++.|..-+....+++.....+.+|..++.+. .+...+ +..|+.+...+.....--++..+..+.......-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 4555554455558999999999999999887 555554 3446666666655543456666666655433221
Q ss_pred hCCCcHHHHHHH--hc-----CCCHHHHHHH---HHHHHHhhcCChHhHHHHHHCCCHHHHHHhh-hcCChHHHHHHHHH
Q 004073 635 STPGLVSGLATV--LD-----TGELIEQEQA---VSCLFLLCNGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRL 703 (775)
Q Consensus 635 ~~~g~I~~Lv~l--L~-----~~s~~~~e~A---v~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll-~~g~~~~k~kA~~L 703 (775)
+.+..++.. ++ .+.....+.- +.....+|...+.+-. ..++.|..++ ..+.+.++..|...
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHH
Confidence 223333333 11 1222223333 3477888887755211 2466777778 78889999999999
Q ss_pred HHHhHhc
Q 004073 704 LMLFREQ 710 (775)
Q Consensus 704 L~~L~~~ 710 (775)
|..|.+.
T Consensus 146 l~~Lc~~ 152 (234)
T PF12530_consen 146 LAPLCEA 152 (234)
T ss_pred HHHHHHH
Confidence 9888743
No 280
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=63.79 E-value=35 Score=32.25 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
.+.+..+-.+|.++ ++.+|..|+..|-.+.++. ......++..+++..|+.++.... ..+.++..++..+...+.
T Consensus 36 k~a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~--~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY--PLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHHHHH
Confidence 46677777899988 9999999999999999984 557778888999999999998732 223488888888877653
No 281
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=63.68 E-value=29 Score=29.39 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChHhHHHHHHCC
Q 004073 613 TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 680 (775)
Q Consensus 613 ~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G 680 (775)
.+.|++++.++++.+.|..-+.. .+.|+.++++... ....+|--|..+|.-+++.. +..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~-~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE-EGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 36799999999999999887775 4899999999874 56788888888888877654 4555554444
No 282
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=63.66 E-value=17 Score=42.61 Aligned_cols=128 Identities=17% Similarity=0.168 Sum_probs=77.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHh
Q 004073 557 PFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMN 634 (775)
Q Consensus 557 ~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~ 634 (775)
..++...+ | +...|+.|+.-|...-.+ ++-... ++..+++|..+.+..++..|+..|-.+|.+. +....
T Consensus 26 ~~il~~~k-g-~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-G-SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-C-CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 34444433 4 677888888888776643 333333 5666888888888889999999999998863 33332
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh---cCChHHHHHHHHHHH
Q 004073 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV---NGSTRGRDKAQRLLM 705 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~---~g~~~~k~kA~~LL~ 705 (775)
.+..|+.+|.+.++.....+-.+|..|-..++.. .+..|..-+. ++++.+|+++.+.|+
T Consensus 97 ----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 ----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 3456788888888877777777777777665432 2333443222 677778888777663
No 283
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=62.95 E-value=21 Score=37.83 Aligned_cols=171 Identities=19% Similarity=0.169 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-c-CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-N-GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~-G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
...++..+..- +.+.+.=++..+|.++....... .+.. . |....+..++...........+.-+++++.|+ ..+.
T Consensus 65 ~~~~~~~~~~W-p~~~~fP~lDLlRl~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~Nl-F~~~ 141 (268)
T PF08324_consen 65 LILLLKILLSW-PPESRFPALDLLRLAALHPPASD-LLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANL-FSHP 141 (268)
T ss_dssp HHHHHHHHCCS--CCC-HHHHHHHHHHCCCHCHHH-HHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHH-TTSC
T ss_pred HHHHHHHHHhC-CCccchhHHhHHHHHHhCccHHH-HHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHh-hCCC
Confidence 33444444443 44567777888887776543333 3333 2 23556666665544446778888999999999 4567
Q ss_pred chhHHHHhhC--cHHHHHHHhccC----Ch--HHHHHHHHhcccccCCcccc--ccccCchHHHHHhh-cCCCCHHHHHH
Q 004073 506 RNKELMLAAG--VIPLLEKMISNS----NS--HGAATALYLNLSFLDDAKPI--IGSSHAVPFLVELC-KGKTEHQCKLD 574 (775)
Q Consensus 506 ~nk~~i~~~G--~i~~Lv~lL~s~----~~--~~~AaaaL~~Ls~~~~~k~~--I~~~g~i~~LV~LL-~~~~~~~~k~~ 574 (775)
..+..+.+.. .+-..+..+... +. +..++.+++|++..-..... -.....+..+++.+ ....++++.-.
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 7777776532 233333333332 11 34455566798864221111 11123566777743 33248999999
Q ss_pred HHHHHHHhcCCCCChHHHHH-cCcHHHH
Q 004073 575 ALHALYNLSTIPSNIPNLLS-AGIISGL 601 (775)
Q Consensus 575 Al~aL~nLs~~~~nk~~iv~-aG~V~~L 601 (775)
++.||.+|...+.....+.+ .|+-..+
T Consensus 222 ~LvAlGtL~~~~~~~~~~~~~l~~~~~~ 249 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQLAKSLDVKSVL 249 (268)
T ss_dssp HHHHHHHHHCCSHHHHHHCCCCTHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHcChHHHH
Confidence 99999999976666555555 3444333
No 284
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=62.88 E-value=72 Score=39.96 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=95.0
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCC-hHHHHHHHHHHHHHhCCcccHH
Q 004073 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGD-PMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~-~~i~e~al~~L~nLa~~~e~~~ 631 (775)
.+++..|+..|++. +..++-.|++.+..+..... ..+++ .+|...++++...+ ...-.-++-+|+.||.-.--..
T Consensus 340 E~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 57788888999888 99999999999999986555 33333 36667777664422 3333577778888876433222
Q ss_pred HHhhCCCcHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcCC-hHhHHHHHHCCCHHHH-HHhhhcCChHHHHHHH
Q 004073 632 EMNSTPGLVSGLATVLD--------TGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPAL-VSISVNGSTRGRDKAQ 701 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~--------~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~i~~L-v~Ll~~g~~~~k~kA~ 701 (775)
.... ..+|.+++-|. +.+..+|+.|+.++|++.+.. +....-+++. ....| ..-+-+..-..|+.|.
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHH
Confidence 2232 46677776664 245679999999999999753 2222222221 22222 2344556777888888
Q ss_pred HHHHHhH
Q 004073 702 RLLMLFR 708 (775)
Q Consensus 702 ~LL~~L~ 708 (775)
.+|.-.-
T Consensus 493 AAlqE~V 499 (1133)
T KOG1943|consen 493 AALQENV 499 (1133)
T ss_pred HHHHHHh
Confidence 7665443
No 285
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=62.87 E-value=1.2e+02 Score=37.24 Aligned_cols=261 Identities=14% Similarity=0.119 Sum_probs=129.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchh
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 508 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk 508 (775)
.+...+... .++.+.+++.....++.. +.+.+..+...-.+|.+-.+..+ .+..+....+..+.+++--.. +
T Consensus 359 ~~~~l~~~~-~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d----~~~~vr~a~a~~~~~~~p~~~--k 431 (759)
T KOG0211|consen 359 PVSNLLKDE-EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD----NALHVRSALASVITGLSPILP--K 431 (759)
T ss_pred hHHHHhcch-hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc----ccchHHHHHhccccccCccCC--c
Confidence 344444444 567777777777666643 33344556666667777666665 566666555555555532111 1
Q ss_pred HHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCcccccc----ccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 509 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIG----SSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 509 ~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~----~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
..- -.-.+|.++..++.... +.-..++..++..+.....+| ....+|.++.+-... ..+++.+.++.+.-++.
T Consensus 432 ~~t-i~~llp~~~~~l~de~~-~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 432 ERT-ISELLPLLIGNLKDEDP-IVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLAL 508 (759)
T ss_pred CcC-ccccChhhhhhcchhhH-HHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHH
Confidence 100 01234444444443221 111111212223333333333 245688888887776 88999999999988876
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 664 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~ 664 (775)
... ..+...-..+.+..-+.+....+++.|+..|..++..-. ...-.. ..|+.++.....++=..|.-.+.++..
T Consensus 509 q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~ 583 (759)
T KOG0211|consen 509 QLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHE 583 (759)
T ss_pred hhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH--HhhHHHHHHhcCcccchhhHHHHHHHH
Confidence 444 233322222222223444445677777777777765322 111111 234554444444333333332222222
Q ss_pred hhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 665 LCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 665 Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
|+. ...+.+..+-.+|.+..+..+..+.+|-++++.|..+-
T Consensus 584 la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 584 LAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 221 01112223335666667777777777777776665543
No 286
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=62.70 E-value=1.3e+02 Score=33.96 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcC-CCCCh---HHHHHcC-cHHHHHHhccCC---ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHH
Q 004073 571 CKLDALHALYNLST-IPSNI---PNLLSAG-IISGLQSLAVPG---DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSG 642 (775)
Q Consensus 571 ~k~~Al~aL~nLs~-~~~nk---~~iv~aG-~V~~Lv~LL~~~---~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~ 642 (775)
..+.-++.|..+.. ...+. ..+++.+ .+..|..++.+. .+.+.-.|+.++..+..++...-.++...|.++.
T Consensus 76 llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~ 155 (379)
T PF06025_consen 76 LLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDA 155 (379)
T ss_pred HHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHH
Confidence 34444444444444 33322 2244524 445555567654 3677788999999888876666666666799999
Q ss_pred HHHHhc-CC---CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc
Q 004073 643 LATVLD-TG---ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN 691 (775)
Q Consensus 643 Lv~lL~-~~---s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~ 691 (775)
+++.+. .+ +.++-...-.+|.+||-++ ...+.+.+.+.++.++.+..+
T Consensus 156 ~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 156 FLDAITAKGILPSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCC
Confidence 999988 43 5666666777888899876 667778888888888776543
No 287
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=62.70 E-value=50 Score=39.58 Aligned_cols=179 Identities=18% Similarity=0.176 Sum_probs=116.2
Q ss_pred hCcHHHHHHHhccCChHHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHH
Q 004073 514 AGVIPLLEKMISNSNSHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNL 592 (775)
Q Consensus 514 ~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~i 592 (775)
.-.+|.|..+++.....+.-+-++.++... ...+..-....++|.|..-+++. +..+++.++..+-..+..-+ ...
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~ 424 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPF 424 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHH
Confidence 346777777776543334344444444221 11111222245678888888887 89999999999999886555 556
Q ss_pred HHcCcHHHHHHhc-cCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChH
Q 004073 593 LSAGIISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK 671 (775)
Q Consensus 593 v~aG~V~~Lv~LL-~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~ 671 (775)
++.-++|.|-.+. ...+..++-.++.++..+. ..-.+..+++ -+..+.+-++..+|.+.-..+.+..++......
T Consensus 425 vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-q~lD~~~v~d---~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 425 VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI-QRLDKAAVLD---ELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-HHHHHHHhHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 6666888888863 4456777888888888887 2223333333 255566666678898888888888777754322
Q ss_pred hHHHHHHCCCHHHHHHhhhcCChHHHHHH
Q 004073 672 CCQMVLQEGVIPALVSISVNGSTRGRDKA 700 (775)
Q Consensus 672 ~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA 700 (775)
. +.++.+.++|.++.+...+.-...+.+
T Consensus 501 g-~ev~~~~VlPlli~ls~~~~L~~~Qy~ 528 (700)
T KOG2137|consen 501 G-VEVMAENVLPLLIPLSVAPSLNGEQYN 528 (700)
T ss_pred c-eeeehhhhhhhhhhhhhcccccHHHHH
Confidence 2 567777899999988888765544433
No 288
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.16 E-value=5.5 Score=35.59 Aligned_cols=27 Identities=22% Similarity=0.754 Sum_probs=23.8
Q ss_pred CCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004073 299 ASGQTYERICIEKWLSDGHSTCPKTQQK 326 (775)
Q Consensus 299 ~~G~ty~r~~I~~w~~~~~~~CP~t~~~ 326 (775)
.|+|.|--.||.+|+.. +..||.+.++
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 58899999999999986 7799998765
No 289
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=60.81 E-value=4e+02 Score=32.79 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=86.0
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC-CcccHHH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEE 632 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~-~~e~~~~ 632 (775)
..-..+...+.++ +....+..+.++.+++.-..-...- ...-+++-..-.+..-..+.+....+|..++. .++....
T Consensus 441 ~lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 441 NLWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4556777777877 8899999999999998644311111 11111111122222223455777888888887 4566677
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--hHhHHHHHHCCC
Q 004073 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN--EKCCQMVLQEGV 681 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~--~~~~~~v~~~G~ 681 (775)
+....++...++.++-++.+++.+.|..+|......+ .+..+.+++...
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~ 569 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNF 569 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhH
Confidence 7777799999999999999999999999999998533 356666666643
No 290
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=60.67 E-value=1.4e+02 Score=33.63 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCC-CHHHHHHHHHHHHHhhccCCchh-HHHHhhCcH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCER-NSYAQEIGAMALFNLAVNNNRNK-ELMLAAGVI 517 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~-d~~~qe~A~~aL~nLs~~~~~nk-~~i~~~G~i 517 (775)
+.++-.+|+..|.++.-.+...|....+......+.+++....... -..++..=+..|+-++.-....| ..+++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 4577888999999999999999988888777777777665422111 11233333444444432223334 445678999
Q ss_pred HHHHHHhccC---------Ch---H-----HHHHHHHhcccccC
Q 004073 518 PLLEKMISNS---------NS---H-----GAATALYLNLSFLD 544 (775)
Q Consensus 518 ~~Lv~lL~s~---------~~---~-----~~AaaaL~~Ls~~~ 544 (775)
+.+.+.|... +. + ..|..++||+.++.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 9999999642 11 1 23666678887654
No 291
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.58 E-value=45 Score=31.45 Aligned_cols=76 Identities=21% Similarity=0.188 Sum_probs=59.3
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-HhHHHHHHCCCHHHHHHhhhc---CChHHHHHHHHHHHHhHhccCC
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVN---GSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~---g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
.++..|-+.|.+++|.++-.|+.+|-.+..+.. .....+.....+..|+.++.+ ..+.+|.++..++......-.+
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 457778888999999999999999988887653 356666666777778888865 4778999999999887765443
No 292
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=57.96 E-value=51 Score=31.76 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=61.1
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-hHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHHHhHhccC
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~~~ 712 (775)
.++..|.+.|.+.++.++-.|+.+|-.+..+. ......+.....+..|+.++.. .+..++++...+++.....-.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 46777888889999999999999998888654 3566677777889999988887 789999999999888765443
No 293
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=57.48 E-value=3.4 Score=51.82 Aligned_cols=44 Identities=27% Similarity=0.498 Sum_probs=38.5
Q ss_pred CCcccccccccccc-CceecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004073 280 PEELRCPISLQLMY-DPVIIASGQTYERICIEKWLSDGHSTCPKTQ 324 (775)
Q Consensus 280 p~~f~CPIs~~~m~-dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~ 324 (775)
-..|.|+||+++|+ -=-+.-|||-||-.|++-|+.. +..||.|.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 45679999999999 5667799999999999999985 77899996
No 294
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.41 E-value=1.8e+02 Score=38.08 Aligned_cols=265 Identities=12% Similarity=0.087 Sum_probs=131.8
Q ss_pred hHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhccChhhhHH-hhccCchHHHHHHhchhccCCCHHHHHHHHHHH---HHh
Q 004073 426 ERYQDFLNVL-NEGENLGQKCNIVEQIRLLLKDDEEARVF-TGANGFVVALLRFLESAVCERNSYAQEIGAMAL---FNL 500 (775)
Q Consensus 426 ~~i~~Ll~~L-~s~~~~~~q~~Al~~L~~Lak~~~~nr~~-i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL---~nL 500 (775)
..+...+..+ .+. +++.|..++.=|-.+.+.-...+.. ...........++|.. .|+-.|..|..-| +.|
T Consensus 817 ~~~~~~l~~~~~s~-nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd----~dEf~QDvAsrGlglVYel 891 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSP-NPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSD----NDEFSQDVASRGLGLVYEL 891 (1702)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcc----cHHHHHHHHhcCceEEEec
Confidence 3444444444 444 6666665543333333221111111 1223344778888887 7888888887544 344
Q ss_pred hccCCchhHHHHhhCcHHHHHHHhccCChH------------------------HHHHHHHhcccccCCccccccccCch
Q 004073 501 AVNNNRNKELMLAAGVIPLLEKMISNSNSH------------------------GAATALYLNLSFLDDAKPIIGSSHAV 556 (775)
Q Consensus 501 s~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~------------------------~~AaaaL~~Ls~~~~~k~~I~~~g~i 556 (775)
++...|..+ +..|+.-|-.|... .....-|+||+. -+++.+.|
T Consensus 892 --gd~~~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLV 958 (1702)
T KOG0915|consen 892 --GDSSLKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLV 958 (1702)
T ss_pred --CCchhHHHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHH
Confidence 344445443 44556655444311 001111222221 12223333
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhh
Q 004073 557 PFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNS 635 (775)
Q Consensus 557 ~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~ 635 (775)
=....|-++......++-|+--+..|+....-+.+=----.||.|.+.=.+++..++.....+=..|...+ ........
T Consensus 959 YKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n 1038 (1702)
T KOG0915|consen 959 YKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN 1038 (1702)
T ss_pred HHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 34444444433344555555555555543322211111336777777777888887665555444454432 22233332
Q ss_pred CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChH--hHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 636 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK--CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~--~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
....-|+.-|.+..=++||.++.+|..|-.+.+. ....+- ..-..+...+.+-.+.+|+.|-++.+.+.+.--
T Consensus 1039 --eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1039 --EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred --HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2445555555555668999999999999886531 112111 122233344444556666666666666655433
No 295
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=57.37 E-value=39 Score=32.90 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=84.3
Q ss_pred hHHHHHhhcC-CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhC-CcccHHH
Q 004073 556 VPFLVELCKG-KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA-SAAGKEE 632 (775)
Q Consensus 556 i~~LV~LL~~-~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~-~~e~~~~ 632 (775)
+..++.-|.. .....++..|+-++..+- +..+.... ..+...+. ++.+++..-.-.++.+|..|-- .++--..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~--~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK--EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH--HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555543 225667888888887772 21222211 12333333 4443322233566666666644 4555566
Q ss_pred HhhCCCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCC-hH-HHHHHHHHH
Q 004073 633 MNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS-TR-GRDKAQRLL 704 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~-~~-~k~kA~~LL 704 (775)
+...+|..+.++.++. ..+...+..++.+|..=|.. +.++..+...+++-|-.+..+.. +. +|..|.-.|
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 7767899999999999 66777777777777665554 34555555556888888886554 44 566555443
No 296
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=57.24 E-value=54 Score=31.56 Aligned_cols=74 Identities=8% Similarity=0.036 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~-~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
.+.+..+..+|.+. ++.+|..|+..|..++++.. .....++...++..|++++... .+..++...+..|...+.
T Consensus 36 k~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHH
Confidence 56677788899988 99999999999999999865 4566788899999999999863 578899998888888763
No 297
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=56.72 E-value=1.3e+02 Score=37.27 Aligned_cols=145 Identities=10% Similarity=0.026 Sum_probs=95.2
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004073 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
.|.+-.+.+....+.|..+...|+..|-.|+..-....+=...++.+.|++-+.+....+++.++.++...+..
T Consensus 293 ~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------ 366 (815)
T KOG1820|consen 293 TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------ 366 (815)
T ss_pred chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------
Confidence 45566666666555588888889998888875333222223356778888877777777778888777766651
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-HhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
.......+.+...++.++|..+..+...|........ .....---.++++.++....+....+|..|...+
T Consensus 367 -~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 367 -TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV 438 (815)
T ss_pred -ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence 1112456778888999999999987777655544321 1222222234677777777788888888777544
No 298
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=56.61 E-value=1.9e+02 Score=35.31 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=99.0
Q ss_pred HHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhh---------------
Q 004073 450 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA--------------- 514 (775)
Q Consensus 450 ~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~--------------- 514 (775)
.|.....+++++...+.+.|++..+...+... .....+..++..|.|++...+.....+...
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f---~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF---DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 88899999999999999999999999999874 566788899999999975322111111111
Q ss_pred ------CcHHHHHHHhccCCh------HHHHHHHHh-cccccCCccccccccCchHH-HHHhhcCCCCHHHHHHHHHHHH
Q 004073 515 ------GVIPLLEKMISNSNS------HGAATALYL-NLSFLDDAKPIIGSSHAVPF-LVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 515 ------G~i~~Lv~lL~s~~~------~~~AaaaL~-~Ls~~~~~k~~I~~~g~i~~-LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
.+...|..++.+++. +..+...+. ................-+.+ +..++.....+.....|++++.
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~ 650 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK 650 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence 122333333332111 111111111 11111111111111223334 5566665546778999999999
Q ss_pred HhcC-CCCChHHHHHcCcHHHHHHhccC-CChHHHHHHHHHH
Q 004073 581 NLST-IPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVL 620 (775)
Q Consensus 581 nLs~-~~~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~al~~L 620 (775)
++.. +++++..+.+.|+++.+..+-.. ....+++.+..++
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 651 NVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 9984 56788888889999888875432 2333444444443
No 299
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=56.09 E-value=8 Score=35.15 Aligned_cols=52 Identities=23% Similarity=0.543 Sum_probs=32.2
Q ss_pred CCccccccccccccCceecC-C-C----CccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVIIA-S-G----QTYERICIEKWLSDGHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~-~-G----~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l 332 (775)
.+.+.|||++++-..=|.+. + | .-||..++.+-...| ..=|.+|+|++..++
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~sMI 95 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPSMI 95 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTE
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChhhE
Confidence 46789999999999999883 2 2 469999999988864 345888888876654
No 300
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=55.83 E-value=51 Score=31.62 Aligned_cols=74 Identities=14% Similarity=-0.005 Sum_probs=59.9
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHHHhHhcc
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.++..|.+.|.++++.++-.|+.+|-.+..+ .......+...+.+..|+.++. ...+.+|+++..++..-...-
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4677888889999999999999988888765 4456777778888999998776 467789999999888777543
No 301
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=55.28 E-value=1.2e+02 Score=32.45 Aligned_cols=68 Identities=21% Similarity=0.131 Sum_probs=53.0
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
...+-.|+++|.++ ..-.+...+..|+.|-..-+.+.. ..+..+.+|++++..+ . ..+|+.+|.+...
T Consensus 187 ~~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~-~--~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 187 FQILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTD-L--WMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCc-c--HHHHHHHHHHHHh
Confidence 35678899999998 888999999999999876664444 6677999999999653 2 3778888877654
No 302
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=54.13 E-value=59 Score=30.94 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHH--HHHHHHHHHHHhh
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSY--AQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~--~qe~A~~aL~nLs 501 (775)
.+.+..+-.+|.++ ++.+|..|+..|-.+.++. +..+..++...++..|++++.+.. .+.. +++.++..|...+
T Consensus 41 kea~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~--~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK--TDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT--THHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC--CCchhHHHHHHHHHHHHHH
Confidence 45666777799998 9999999999999999986 567788888899999999998632 2222 7888887777765
No 303
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=53.46 E-value=9.8 Score=42.14 Aligned_cols=35 Identities=31% Similarity=0.633 Sum_probs=25.5
Q ss_pred eecCCCCccch-----HHHHHHHhc------------CCCCCCCCCCCCCCC
Q 004073 296 VIIASGQTYER-----ICIEKWLSD------------GHSTCPKTQQKLPHL 330 (775)
Q Consensus 296 V~~~~G~ty~r-----~~I~~w~~~------------~~~~CP~t~~~l~~~ 330 (775)
..-+|++-||| +|+-|||.. |..+||.||.+++-.
T Consensus 302 ~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 302 NEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred cCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 34467777765 799999963 245799999987643
No 304
>PLN02189 cellulose synthase
Probab=52.95 E-value=9.5 Score=47.47 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=37.1
Q ss_pred cccccccc-----cccCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 283 LRCPISLQ-----LMYDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 283 f~CPIs~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
-.|+||++ .+-+|-+. .||.-.||.|.+.=-.+|+..||.|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 38999987 45567654 477789999998777889999999998876
No 305
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=52.77 E-value=1.1e+02 Score=36.72 Aligned_cols=256 Identities=18% Similarity=0.154 Sum_probs=138.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.++..|.-- +.+.+.+=...|..-.. ..-+.++..-.+|.|+..+.. .+ .-...+..|+.+....+ ...
T Consensus 258 ~fLeel~lk-s~~eK~~Ff~~L~~~l~---~~pe~i~~~kvlp~Ll~~~~~----g~--a~~~~ltpl~k~~k~ld-~~e 326 (690)
T KOG1243|consen 258 LFLEELRLK-SVEEKQKFFSGLIDRLD---NFPEEIIASKVLPILLAALEF----GD--AASDFLTPLFKLGKDLD-EEE 326 (690)
T ss_pred HHHHhcccC-cHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhc----cc--cchhhhhHHHHhhhhcc-ccc
Confidence 344444443 56666665555554332 222334555566667666655 23 12223444444432111 111
Q ss_pred HHHhhCcHHHHHHHhccCChHHHHHHHHhccc-ccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNSHGAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 588 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls-~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~n 588 (775)
...+++|.|++++...+.... ...|.++- ..+.--..+.+...+|.+..-+.+. ++.+++.++.++..|+.--.-
T Consensus 327 --yq~~i~p~l~kLF~~~Dr~iR-~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 --YQVRIIPVLLKLFKSPDRQIR-LLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred --cccchhhhHHHHhcCcchHHH-HHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhch
Confidence 566799999999988774222 22222222 1223334555677889999888887 999999999999988742221
Q ss_pred hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004073 589 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
+ .+....+..|-.+-.+....++....-+|..++..-. ...+..-.+.....-+++.-+..+..++..|+..+..
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccc---hhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 1 1222233334443333344444444444444443211 1112212233344455555556678888888777754
Q ss_pred ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 669 NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 669 ~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
-+ +.-+..-++|.++-+..+...-+|..|-+.++.+-
T Consensus 478 ~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 478 FD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cc---hhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 31 11223346778888888888888888887776553
No 306
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=52.57 E-value=56 Score=34.49 Aligned_cols=135 Identities=21% Similarity=0.122 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcC--cHHHHHHhc-cCC---ChHHHHHHHHHHHHHhCCcc-cH-HHHhhCCCc
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAG--IISGLQSLA-VPG---DPMWTEKSLAVLLNLAASAA-GK-EEMNSTPGL 639 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG--~V~~Lv~LL-~~~---~~~i~e~al~~L~nLa~~~e-~~-~~i~~~~g~ 639 (775)
.+..+.-++++|.|+-.+...+..+.+.. .+-..+..+ ... +..++-.++.++.|++..-- .+ ..-.. ...
T Consensus 123 ~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~l 201 (268)
T PF08324_consen 123 PPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SEL 201 (268)
T ss_dssp SHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHH
T ss_pred cHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHH
Confidence 67889999999999999999998888743 344444433 332 67788888899999975110 00 00000 013
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhh-hcCChHHHHHHHHH
Q 004073 640 VSGLATVLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRL 703 (775)
Q Consensus 640 I~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll-~~g~~~~k~kA~~L 703 (775)
+..+++.+.. .++++.-.++.+|.+|+..+..........|+-..+-... ....+++++.+..+
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 4555553332 5889999999999999987755555554455555544433 45678888877653
No 307
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.38 E-value=1.8e+02 Score=35.33 Aligned_cols=129 Identities=14% Similarity=0.085 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPL 519 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~ 519 (775)
+...|...++.|+..+..++.-+ +-.|..+..+|.+ .+..+...|+++|.+++. ++ +-..-. ...
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~s----tssaV~fEaa~tlv~lS~-~p-~alk~A----a~~ 283 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSS----TSSAVIFEAAGTLVTLSN-DP-TALKAA----AST 283 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhc----CCchhhhhhcceEEEccC-CH-HHHHHH----HHH
Confidence 45677778888888887665433 3457788899988 677888888888888853 33 222111 223
Q ss_pred HHHHhccCCh-HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 004073 520 LEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 586 (775)
Q Consensus 520 Lv~lL~s~~~-~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~ 586 (775)
++.++...++ .....- |..|+.....-..|. .|.+--.+.+|... +.++++.++.....|++..
T Consensus 284 ~i~l~~kesdnnvklIv-ldrl~~l~~~~~~il-~~l~mDvLrvLss~-dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIV-LDRLSELKALHEKIL-QGLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHHHHHhccCcchhhhh-HHHHHHHhhhhHHHH-HHHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhc
Confidence 3333332221 111111 112222221112222 35556667888888 9999999999999887644
No 308
>PLN02195 cellulose synthase A
Probab=51.45 E-value=11 Score=46.67 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=37.4
Q ss_pred ccccccc-----cccCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 284 RCPISLQ-----LMYDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 284 ~CPIs~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.|.||++ .+-+|-+. .||.-.||.|.+.=-.+|+..||.|+..+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5888877 66787665 578889999997767789999999998887
No 309
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.24 E-value=15 Score=40.85 Aligned_cols=59 Identities=17% Similarity=0.455 Sum_probs=39.3
Q ss_pred CccccccccccccC---ceecCCCCccchHHHHHHHh----cCCC---CCCCCCCCCCCCCCcccHHHHHHHH
Q 004073 281 EELRCPISLQLMYD---PVIIASGQTYERICIEKWLS----DGHS---TCPKTQQKLPHLCLTPNYCVKGLIA 343 (775)
Q Consensus 281 ~~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~----~~~~---~CP~t~~~l~~~~l~pn~~l~~~i~ 343 (775)
.-|.|.||.+-..- =+.+||+|.|||.|...+|. +|.. .||.++ ......|+ .|+.++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~---C~~~a~~g-~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK---CGSVAPPG-QVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC---CcccCCch-HHHHHHH
Confidence 46899999886543 34679999999999999985 3433 366543 22333343 5666663
No 310
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.21 E-value=5.6e+02 Score=31.59 Aligned_cols=206 Identities=11% Similarity=0.147 Sum_probs=125.2
Q ss_pred HHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChHHHHHHH--HhcccccCCccccc
Q 004073 473 ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATAL--YLNLSFLDDAKPII 550 (775)
Q Consensus 473 ~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~Aaaa--L~~Ls~~~~~k~~I 550 (775)
-|..+|.+ ........|..-|.++..+ ..+ -...+|..|+-..+.+....-+.- |...+....+-..+
T Consensus 39 dL~~lLdS----nkd~~KleAmKRIia~iA~-G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL 108 (968)
T KOG1060|consen 39 DLKQLLDS----NKDSLKLEAMKRIIALIAK-GKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL 108 (968)
T ss_pred HHHHHHhc----cccHHHHHHHHHHHHHHhc-CCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee
Confidence 46777877 4445566677666665332 223 234677777777666653222222 22233322222222
Q ss_pred cccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-ccc
Q 004073 551 GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAG 629 (775)
Q Consensus 551 ~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~ 629 (775)
-|..+=+-|.+. |+.++--|+.+|..+ |.-++.-=++-.+-+...+..+-++..|+-+|-.|-+- ++.
T Consensus 109 ----SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 109 ----SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred ----eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence 356677778888 999999888888765 22222111111122244677888888888888888653 444
Q ss_pred HHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 630 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+.++ +..+=.+|.+.+|.+--.|+.+.-.+|-.. ...+ ++-...|..++.+-++..|--...+|-...+
T Consensus 178 k~qL------~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 178 KDQL------EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred HHHH------HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 4433 344555778889999999999999998653 2222 3447788888888888888877766554444
Q ss_pred c
Q 004073 710 Q 710 (775)
Q Consensus 710 ~ 710 (775)
+
T Consensus 247 ~ 247 (968)
T KOG1060|consen 247 H 247 (968)
T ss_pred h
Confidence 3
No 311
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.17 E-value=1.5e+02 Score=36.92 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=87.9
Q ss_pred HHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhc------CC-CCHHHHHHHHHHHHHhcCC-CC--ChHH
Q 004073 522 KMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK------GK-TEHQCKLDALHALYNLSTI-PS--NIPN 591 (775)
Q Consensus 522 ~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~------~~-~~~~~k~~Al~aL~nLs~~-~~--nk~~ 591 (775)
.+...+.+-..|+..+...+.....|..+ .|.++.++.+|. .. .+++.+.-|+.++.+|+.- .+ --.-
T Consensus 380 Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~ 457 (1010)
T KOG1991|consen 380 DIFEDGYSPDTAALDFLTTLVSKRGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS 457 (1010)
T ss_pred chhcccCCCcHHHHHHHHHHHHhcchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH
Confidence 33444443233444444444444455555 588999999997 11 3678899999999999831 11 1112
Q ss_pred HHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCC
Q 004073 592 LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 592 iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
..+.=+++.+...+.++..-++.+|++++...++-.-.-..+.. .+.....+.|. +.+--++-.|+-+|..+-++.
T Consensus 458 ~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 458 QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 33344566666677777777889999999999953222122221 23455555565 445567778888887776655
No 312
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=50.91 E-value=19 Score=42.96 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=44.4
Q ss_pred CCCCCCCccccccccccccCce----ecC---CCCccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 275 QMPLPPEELRCPISLQLMYDPV----IIA---SGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV----~~~---~G~ty~r~~I~~w~~~-----~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..+..++.-.|++|-.-+.+|| +.+ +|+.+|-.||.+|.+. .+..||.| ..-|
T Consensus 89 ~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC---------------~~Ci 153 (1134)
T KOG0825|consen 89 VDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC---------------EECV 153 (1134)
T ss_pred cCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH---------------HHHh
Confidence 4456678899999999999976 334 8999999999999862 24456776 5566
Q ss_pred HHHHHH
Q 004073 343 ASWCEM 348 (775)
Q Consensus 343 ~~~~~~ 348 (775)
..||.-
T Consensus 154 ~sWsR~ 159 (1134)
T KOG0825|consen 154 GSWSRC 159 (1134)
T ss_pred hhhhhh
Confidence 778663
No 313
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=50.68 E-value=1.1e+02 Score=37.33 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=120.6
Q ss_pred HHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchH--HHHHhhcCCCCHH
Q 004073 496 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVP--FLVELCKGKTEHQ 570 (775)
Q Consensus 496 aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~--~LV~LL~~~~~~~ 570 (775)
+|.++...+.++...+++.|+...+...++.-.. ...+.+.+.+++...+++........+. .+-.++..-.+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7778877778888999999999999999986532 4678999999998877666554322222 2223444431336
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH-hCCcccHHHHhhCCCcHHH-HHHHhc
Q 004073 571 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL-AASAAGKEEMNSTPGLVSG-LATVLD 648 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL-a~~~e~~~~i~~~~g~I~~-Lv~lL~ 648 (775)
.--.|+..|..+..+.+. ....+.= +.+...+... .........+... ..+.. +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r---------------~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFR---------------NSVNELLVEAISRWLTSEIRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccch---------------HHHHHHHHHHhhccCccceeehhh-hhcchhHHHHhc
Confidence 777788888887765543 1111111 1122111111 1111111211111 22222 444555
Q ss_pred -CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC-ChHHHHHHHHHHHHhH
Q 004073 649 -TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-STRGRDKAQRLLMLFR 708 (775)
Q Consensus 649 -~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g-~~~~k~kA~~LL~~L~ 708 (775)
+.++..+-.|+.++.+++..++++++.+.+.|+++.+..+-... ...+++.|..++....
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 45777888999999999988888999999999999998554332 6667777777665543
No 314
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=50.52 E-value=11 Score=40.12 Aligned_cols=44 Identities=27% Similarity=0.660 Sum_probs=32.8
Q ss_pred Cccccccccccc----cCceecCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004073 281 EELRCPISLQLM----YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQ 325 (775)
Q Consensus 281 ~~f~CPIs~~~m----~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~ 325 (775)
.++.|||+.+.+ .+|..++|||+--..|.+.....+ .+||.|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 356699998875 567788999998655555554455 99999965
No 315
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=50.48 E-value=87 Score=30.01 Aligned_cols=76 Identities=8% Similarity=0.062 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhc--cCCCHHHHHHHHHHHHHhh
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~--~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.++ ++.++..|+..|-.+.++. ...+..++..+++.-|++++.... ...+..++...+..|...+
T Consensus 37 k~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 46677788899988 9999999999999999975 557778888999999999996311 1256789988888887765
No 316
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=50.43 E-value=40 Score=29.86 Aligned_cols=69 Identities=20% Similarity=0.128 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
+.+...+..|.++ ...+|..++..|+.|..... ..+.. .+++..+...|+. +|+-+=-+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d----~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDP-LPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKD----EDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCC-CcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHHH
Confidence 4566778888887 78999999999999998755 12222 4555555566655 788888999999999874
No 317
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=49.80 E-value=15 Score=39.72 Aligned_cols=59 Identities=14% Similarity=0.358 Sum_probs=43.4
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIAS 344 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~ 344 (775)
..+-|-||||.+.|.-|+.= .-||.-|-.|=. +-...||.|+.++.+. -++++.+.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~~---R~~amEkV~e~ 104 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGNI---RCRAMEKVAEA 104 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCccccccccH---HHHHHHHHHHh
Confidence 45678999999999999554 349999988843 2356899999888632 45666666654
No 318
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.38 E-value=62 Score=39.58 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=92.9
Q ss_pred HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHH-hccCCC
Q 004073 531 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGD 609 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~-LL~~~~ 609 (775)
..+...|..+....+.+..+...+++....++|++. ++=+--+|+..+..||.- ....++|-|.+ ..+..+
T Consensus 745 ~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s~k~ 816 (982)
T KOG4653|consen 745 GYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLSEKK 816 (982)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHhccc
Confidence 334445555555554555565577888888888877 666666777766666631 22346777777 443221
Q ss_pred ---hHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHH
Q 004073 610 ---PMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL 685 (775)
Q Consensus 610 ---~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~L 685 (775)
+..+-.+-.++.+++... +-.....+ -.+...+..++..+...|..++++|..||........... ..++..+
T Consensus 817 k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev~~~I 893 (982)
T KOG4653|consen 817 KLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HEVLQLI 893 (982)
T ss_pred CCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HHHHHHH
Confidence 222333445555554311 11111111 2344455555555555699999999999964321111111 1234444
Q ss_pred HH-hhhcCChHHHHHHHHHHHHhHh
Q 004073 686 VS-ISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 686 v~-Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+. ...+|..-+|+.|+.++..+-.
T Consensus 894 l~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 894 LSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHccCCchhhHHHHHHHHHHHHh
Confidence 43 3446788889999888876654
No 319
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.20 E-value=1.1e+02 Score=33.27 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=88.7
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHH
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 633 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i 633 (775)
++...+..|.+. +...+-+++..|..|+.++. ....+. .-+|-.+++-+.+....+...|+.++.-+.+.-.....-
T Consensus 89 al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777887 89999999999999987664 222222 236666777777777888888888988887754333221
Q ss_pred hhCCCcHHHHHHHh-cC---CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 634 NSTPGLVSGLATVL-DT---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 634 ~~~~g~I~~Lv~lL-~~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
....++..| .. ...-++|.|-.+|..+...-.- .-+++.|+..+.+-.++++.+|....
T Consensus 167 -----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 167 -----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred -----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccc
Confidence 123333333 33 2345789999999888765311 11456677677778888888877554
No 320
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=48.23 E-value=51 Score=34.93 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=72.5
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccC--CChHHHHHHHHHHHHHhCCcccHH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~--~~~~i~e~al~~L~nLa~~~e~~~ 631 (775)
.+|.+|++=+..+ +.-.+..++-++..|-+ --+|+.|.+.|.+ .++.++..|+.+|..++.
T Consensus 187 eaI~al~~~l~~~-SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------ 249 (289)
T KOG0567|consen 187 EAINALIDGLADD-SALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------ 249 (289)
T ss_pred HHHHHHHHhcccc-hHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------
Confidence 4688888888888 88889999988887733 3378889996643 467888899999987764
Q ss_pred HHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 632 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
+.++..|.+.+...++-+++.|..+|-.+-.
T Consensus 250 -----e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 250 -----EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred -----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998888765543
No 321
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=48.19 E-value=2.5e+02 Score=30.20 Aligned_cols=188 Identities=14% Similarity=0.159 Sum_probs=110.6
Q ss_pred CcHHHHH-HHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCCh--
Q 004073 515 GVIPLLE-KMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI-- 589 (775)
Q Consensus 515 G~i~~Lv-~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk-- 589 (775)
+.+..|+ .-+++.+. ++.|...|...+..+. .++ ...++.+...+..+ +..++..|+.+|+.+....+-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhc
Confidence 3343333 44555544 5677777776665543 121 24567788888777 9999999999999997543311
Q ss_pred HH-------HHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC----CCHHHHHHH
Q 004073 590 PN-------LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT----GELIEQEQA 658 (775)
Q Consensus 590 ~~-------iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~----~s~~~~e~A 658 (775)
.. .-....+..+...+.+.++.++..|+..++.|--...-.. .+..+..|+-+--+ ..+..+..-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 1123466777778877788888888888888755432211 01334444433322 234555555
Q ss_pred HHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCC----hHHHHHHHHHHHHhHhccC
Q 004073 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS----TRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 659 v~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~----~~~k~kA~~LL~~L~~~~~ 712 (775)
...+-..|..+..+ +..+..+.++.+..+..... +...-.+..+.+.+-++.+
T Consensus 177 ~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 177 SVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 55556666666444 56777778888877666543 2222234445555544433
No 322
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=47.67 E-value=92 Score=29.85 Aligned_cols=73 Identities=19% Similarity=0.113 Sum_probs=58.5
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhc------CChHHHHHHHHHHHHhHhc
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVN------GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~------g~~~~k~kA~~LL~~L~~~ 710 (775)
.++..|.+.|.++++.++-.|+.+|-.+..+ .......+...+.+..|+.++.. ....+|.+...++..-...
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999888764 34567777778888889988853 4679999998888777654
No 323
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.39 E-value=3.8 Score=43.28 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=30.0
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCC--CCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGH--STCPKTQQK 326 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~--~~CP~t~~~ 326 (775)
+.+|-||++.-+|=|.++|||-.- ++.-|. ..||+||+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVt------Ct~CGkrm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVT------CTKCGKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEe------ehhhccccccCchHHHH
Confidence 789999999999999999999761 222232 369999764
No 324
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=45.73 E-value=1.3e+02 Score=37.34 Aligned_cols=183 Identities=16% Similarity=0.188 Sum_probs=105.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHH--hhc----------cCchHHHHHHhchhccCCCHHHHHHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TGA----------NGFVVALLRFLESAVCERNSYAQEIG 493 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~--i~~----------~G~I~~Lv~lL~s~~~~~d~~~qe~A 493 (775)
+....|+..|+.. +.--.|+..+..+.++++..+.. .++ ...+|.|++.... .+.....+-
T Consensus 815 ~ia~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t----~~~~~K~~y 887 (1030)
T KOG1967|consen 815 EIAEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFET----APGSQKHNY 887 (1030)
T ss_pred hHHHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhcc----CCccchhHH
Confidence 4455666666542 33344566666666655432211 111 3567777777764 233334445
Q ss_pred HHHHHHhhccCCchhHHHHh--hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCC
Q 004073 494 AMALFNLAVNNNRNKELMLA--AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKT 567 (775)
Q Consensus 494 ~~aL~nLs~~~~~nk~~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~ 567 (775)
+.+|.+.-. +--+..+.. ...+|.|++-|.-.+. +..+..++--+-... -..+.. .-.+|.|+.+=.+..
T Consensus 888 l~~LshVl~--~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~--~tL~t~~~~Tlvp~lLsls~~~~ 963 (1030)
T KOG1967|consen 888 LEALSHVLT--NVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES--ETLQTEHLSTLVPYLLSLSSDND 963 (1030)
T ss_pred HHHHHHHHh--cCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc--cccchHHHhHHHHHHHhcCCCCC
Confidence 566666532 112333332 4578888888876653 333444443221111 111111 346777777766552
Q ss_pred C--HHHHHHHHHHHHHhcC-CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHH
Q 004073 568 E--HQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAV 619 (775)
Q Consensus 568 ~--~~~k~~Al~aL~nLs~-~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~ 619 (775)
+ ..++..|+..|..|.. .+.+.-.--+-.++..|...|+++...++++|+.+
T Consensus 964 n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 964 NNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2 6789999999999987 55555555556688889999988777777887765
No 325
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=45.64 E-value=4.5e+02 Score=28.87 Aligned_cols=153 Identities=15% Similarity=0.098 Sum_probs=99.0
Q ss_pred hHHHHHHhchhccCCCHHHHHHHHHHHHHhhc-cCCchhHHHHh-hC-cHHHHHHHhccC---------------ChHHH
Q 004073 471 VVALLRFLESAVCERNSYAQEIGAMALFNLAV-NNNRNKELMLA-AG-VIPLLEKMISNS---------------NSHGA 532 (775)
Q Consensus 471 I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~~nk~~i~~-~G-~i~~Lv~lL~s~---------------~~~~~ 532 (775)
+..+.+.|++ .....+..++..|..+.. ........+.. -+ -.+.+.+++... +.+.+
T Consensus 58 ~k~lyr~L~~----~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~ 133 (330)
T PF11707_consen 58 LKLLYRSLSS----SKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTN 133 (330)
T ss_pred HHHHHHHhCc----CcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHH
Confidence 5667777776 566677788888888865 32233444443 23 455666666321 11233
Q ss_pred HHHHHhcc-cc-cCCccccc-cccCchHHHHHhhcCCCCHHHHHHHHHHHHH-hcCCC----CChHHHHHcCcHHHHHHh
Q 004073 533 ATALYLNL-SF-LDDAKPII-GSSHAVPFLVELCKGKTEHQCKLDALHALYN-LSTIP----SNIPNLLSAGIISGLQSL 604 (775)
Q Consensus 533 AaaaL~~L-s~-~~~~k~~I-~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n-Ls~~~----~nk~~iv~aG~V~~Lv~L 604 (775)
....+..+ .. +...+..+ ...+.+..+.+-|..+ +.++....+.+|.. +..+. ..|..+....++..|+.+
T Consensus 134 fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~L 212 (330)
T PF11707_consen 134 FIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASL 212 (330)
T ss_pred HHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHH
Confidence 33333322 22 22344444 4467799999999988 89999999999995 44333 356666677789999997
Q ss_pred ccCCCh----HHHHHHHHHHHHHhCCcc
Q 004073 605 AVPGDP----MWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 605 L~~~~~----~i~e~al~~L~nLa~~~e 628 (775)
....+. .+.+.+-..|..+|.++.
T Consensus 213 y~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 213 YSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred hcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 766555 778999999999997553
No 326
>PF14353 CpXC: CpXC protein
Probab=45.36 E-value=13 Score=34.83 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=34.3
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKL 327 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l 327 (775)
+..||-|+..+.=.|-..-.-+-+....++=++. ...+||.||...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 4689999999988877666666777777776642 245799999775
No 327
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=45.04 E-value=5.9e+02 Score=30.10 Aligned_cols=165 Identities=20% Similarity=0.176 Sum_probs=91.1
Q ss_pred cHHHHHHHhccCCh-HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCC---CCHHHHHHHHHHHHHhc----CCC
Q 004073 516 VIPLLEKMISNSNS-HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK---TEHQCKLDALHALYNLS----TIP 586 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~---~~~~~k~~Al~aL~nLs----~~~ 586 (775)
++..|...+.++.. ...|+.++..+... ...- ...+..+..|+.++ .++.++..|+-++.+|. .+.
T Consensus 358 a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 358 ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-----EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 77778888877653 23344444332211 1111 24567777887753 24556777777777664 333
Q ss_pred CChHHHHHcCcHHHHHHhccC----CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc---CCCHHHHHHHH
Q 004073 587 SNIPNLLSAGIISGLQSLAVP----GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD---TGELIEQEQAV 659 (775)
Q Consensus 587 ~nk~~iv~aG~V~~Lv~LL~~----~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~---~~s~~~~e~Av 659 (775)
..+...+....++.|.+.|.. .+..-+-.++.+|.|+.. ...+..|..++. ..++.+|-.|+
T Consensus 433 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av 501 (574)
T smart00638 433 PSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAI 501 (574)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 333223333467777776532 233333446677776533 344556666665 23678999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc--CChHHHHHHHHHH
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVN--GSTRGRDKAQRLL 704 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~--g~~~~k~kA~~LL 704 (775)
.+|..++...+.. +.+.|+.+..+ .++++|-.|..+|
T Consensus 502 ~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 502 LALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999887533222 33445555554 3455565555444
No 328
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.89 E-value=6.8e+02 Score=30.79 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=62.8
Q ss_pred cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC
Q 004073 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD 545 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~ 545 (775)
..+..++..+|.+........++..|+.++.+|.. . +-..+.- ++..|--+|.+... +-.|..+|..++...-
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~--~-~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPN--T-NSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccc--c-CHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 45666777787765544678899999999999852 2 2222222 66677777777654 4567778877765322
Q ss_pred ccc---------ccccc---CchHHHHHhhcCCCCHHHHHHHHHHHH
Q 004073 546 AKP---------IIGSS---HAVPFLVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 546 ~k~---------~I~~~---g~i~~LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
.+. .|... =+..++..+|+.| +...+..-..-+.
T Consensus 315 ~~v~~cN~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~ 360 (865)
T KOG1078|consen 315 QAVTVCNLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQIS 360 (865)
T ss_pred ccccccchhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHH
Confidence 221 22221 2455666777777 4443333333333
No 329
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=44.54 E-value=2.3e+02 Score=33.96 Aligned_cols=158 Identities=13% Similarity=0.011 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHhhccCCchhHHHH---hhCcHHHHHHHhccCCh-HHHHHHHHhcccccCCcccccccc--CchHHH
Q 004073 486 NSYAQEIGAMALFNLAVNNNRNKELML---AAGVIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSS--HAVPFL 559 (775)
Q Consensus 486 d~~~qe~A~~aL~nLs~~~~~nk~~i~---~~G~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~~k~~I~~~--g~i~~L 559 (775)
....+--|+.+|+-+..++.-+-..+- .+..+..++..+..... ...++..|.|+-.+...+..+... -.+.++
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPV 636 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhh
Confidence 556666777777776655444433322 23356666666662222 455888888887776666655542 122222
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhcC--CCCChHHHHHcCcHHHHHHhccC-----CChHHHHHHHHHHHHHhCCcccHHH
Q 004073 560 VELCKGKTEHQCKLDALHALYNLST--IPSNIPNLLSAGIISGLQSLAVP-----GDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 560 V~LL~~~~~~~~k~~Al~aL~nLs~--~~~nk~~iv~aG~V~~Lv~LL~~-----~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
+. .....+..++.+-+....|++. ..+|-. .|+.+.|..++.. .+.+..-..+.+|.+|+..+....+
T Consensus 637 ~~-~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 637 IE-ASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hh-hhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 22 2333244555555555566652 222221 4555555554321 2344567788999999998888888
Q ss_pred HhhCCCcHHHHHHHhcC
Q 004073 633 MNSTPGLVSGLATVLDT 649 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~ 649 (775)
+... -.|..+++.++.
T Consensus 712 ~A~~-~~v~sia~~~~~ 727 (745)
T KOG0301|consen 712 LAKN-RSVDSIAKKLKE 727 (745)
T ss_pred HHHh-cCHHHHHHHHHH
Confidence 8774 568888888874
No 330
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=43.46 E-value=1.6e+02 Score=28.70 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=78.8
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 633 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i 633 (775)
..++.|.++|+++.+..++..++++|..|-.-+.-+-+.+..+.=.. .-.+.+....... +.+....+.. +..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~---l~~~~~~~~~-ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDIS---LPMMGISPSS-EEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhH---HhhccCCCch-HHH
Confidence 35677888888876799999999999999665555544333211100 0001111111111 1111111112 222
Q ss_pred hhCCCcHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 634 NSTPGLVSGLATVLDTGEL-IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 634 ~~~~g~I~~Lv~lL~~~s~-~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.-+ -++..|+.+|+..+- .-...++.++..+...-.-.+.-.+ .-++|.++..+.++++..++--..-|..|
T Consensus 83 y~~-vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPT-VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 222 467888888886543 2344667777777643211222111 23789999999988887777655444433
No 331
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=42.65 E-value=19 Score=28.59 Aligned_cols=27 Identities=26% Similarity=0.689 Sum_probs=23.9
Q ss_pred ccccccccccc--cCceec--CCCCccchHH
Q 004073 282 ELRCPISLQLM--YDPVII--ASGQTYERIC 308 (775)
Q Consensus 282 ~f~CPIs~~~m--~dPV~~--~~G~ty~r~~ 308 (775)
.-+||+|++.+ .|.+++ .||-.|=|.|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 45899999999 889887 5899999999
No 332
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=42.64 E-value=78 Score=29.65 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=51.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHC-CCHHHHHHhhh-----cC---ChHHHHHHHHHHHHhH
Q 004073 639 LVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQE-GVIPALVSISV-----NG---STRGRDKAQRLLMLFR 708 (775)
Q Consensus 639 ~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~-G~i~~Lv~Ll~-----~g---~~~~k~kA~~LL~~L~ 708 (775)
....|.+-|...++.++-.|+.+|-.||.. ++.++..+.+. -+|..+..... .| ...+|..|..++.++-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 455677778888999999999999999974 44555555443 36666666654 22 3578999999998876
Q ss_pred hc
Q 004073 709 EQ 710 (775)
Q Consensus 709 ~~ 710 (775)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 43
No 333
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=41.82 E-value=1.9e+02 Score=28.32 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=68.7
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC-CCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhc---CChH
Q 004073 597 IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDT-GELIEQEQAVSCLFLLCN---GNEK 671 (775)
Q Consensus 597 ~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~---~~~~ 671 (775)
.+..+..+|.+.+..-+-.++..+..++... +.+.+.++ .-.+..|+.+|.. .++...+.|+.+|..|.. +-++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4445666787766665566777776666532 24444332 2356778888875 566789999999988874 3334
Q ss_pred hHHHHHHC---CCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 672 CCQMVLQE---GVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 672 ~~~~v~~~---G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
..+.+.-. +.++.++.++.. ......+..+|..+-..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 44444333 345555666654 55666777777666554
No 334
>PRK14707 hypothetical protein; Provisional
Probab=41.62 E-value=1.2e+03 Score=32.54 Aligned_cols=234 Identities=13% Similarity=-0.003 Sum_probs=122.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.++...+.-|+.=.+......|+..|..-..++.+.+..|-. -.|..+++-|+.. .+..+...|+.+|-.--.++.
T Consensus 373 q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~-Q~van~lnalsKW---Pd~~~C~~aa~~lA~~la~d~ 448 (2710)
T PRK14707 373 QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP-QGVSNALNALAKW---PDLPICGQAVSALAGRLAHDT 448 (2710)
T ss_pred hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch-hhHHHHHHHhhcC---CcchhHHHHHHHHHHHHhccH
Confidence 456666666665546778888999998888888888887744 4456666666553 677777777777744323344
Q ss_pred chhHHHHhhCcHHHHHHHhcc-CChH--HHHHHHH-hcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISN-SNSH--GAATALY-LNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s-~~~~--~~AaaaL-~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
+-+..|--.+ |--.++.|+. +++. ..|+..| ..|+...+.+..+-..++...|-.|=+-+....+.+.+.+.-..
T Consensus 449 ~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~r 527 (2710)
T PRK14707 449 ELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAER 527 (2710)
T ss_pred HHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 4444332223 3333333332 3332 3344444 45666555544444334444443433333234455555555555
Q ss_pred hcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC--CCHHHHHHHH
Q 004073 582 LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAV 659 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~--~s~~~~e~Av 659 (775)
+.....-...+-.-++...|-.+-+.++...++.++..|..+.........-.. .-.|..+++.|+. ..+..++-+.
T Consensus 528 l~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~ 606 (2710)
T PRK14707 528 VVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVN 606 (2710)
T ss_pred hccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHH
Confidence 543222222222222222233344455666667777777666544433333333 2567888888873 3344444333
Q ss_pred HHHHHh
Q 004073 660 SCLFLL 665 (775)
Q Consensus 660 ~~L~~L 665 (775)
.+-..|
T Consensus 607 ~LA~~l 612 (2710)
T PRK14707 607 ALAERL 612 (2710)
T ss_pred HHHHHh
Confidence 333333
No 335
>PLN02436 cellulose synthase A
Probab=41.28 E-value=19 Score=45.13 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=36.9
Q ss_pred cccccccc-----cccCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 283 LRCPISLQ-----LMYDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 283 f~CPIs~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
-.|.||++ ..-||-+. .||.-.||.|.+.=-.+|+..||.|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 38999986 35567654 477889999998777889999999998876
No 336
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=40.86 E-value=27 Score=32.97 Aligned_cols=51 Identities=16% Similarity=0.374 Sum_probs=40.7
Q ss_pred CCccccccccccccCceec----CCCCccchHHHHH-HHh-cCCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVII----ASGQTYERICIEK-WLS-DGHSTCPKTQQKLPHL 330 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~----~~G~ty~r~~I~~-w~~-~~~~~CP~t~~~l~~~ 330 (775)
|.-+.|-||.|.-.|+--+ .||...|-.|--. |-- .-++.||+|+.++...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3568899999999999887 4799999999887 532 4578999998877543
No 337
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=40.61 E-value=19 Score=45.09 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=36.4
Q ss_pred cccccccc-----ccCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 284 RCPISLQL-----MYDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 284 ~CPIs~~~-----m~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.|.||++= .-||-+. .||--.||.|.|.=-.+|+..||.|+..+.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 79998863 5567654 577889999998777899999999998775
No 338
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=40.57 E-value=11 Score=33.85 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=28.3
Q ss_pred CCCCCCccccccccccccCceec--CCCCccchHHHH
Q 004073 276 MPLPPEELRCPISLQLMYDPVII--ASGQTYERICIE 310 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~--~~G~ty~r~~I~ 310 (775)
...+.++-.|++|++.+.+++.. |+||.|-..|+.
T Consensus 72 ~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 72 SVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred eEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34567778899999999988754 999999888864
No 339
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=40.04 E-value=13 Score=22.47 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=7.4
Q ss_pred ccceeecCCc
Q 004073 760 AFSFLWKSKS 769 (775)
Q Consensus 760 ~~~~~~~~~~ 769 (775)
--+||||+.+
T Consensus 7 CknffWK~~t 16 (18)
T PF03002_consen 7 CKNFFWKTFT 16 (18)
T ss_pred ccceeecccc
Confidence 3479999764
No 340
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.86 E-value=5.8e+02 Score=32.11 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=78.2
Q ss_pred cCchHHHHHHhchhcc----CCCHHHHHHHHHHHHHhhc---cCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHh
Q 004073 468 NGFVVALLRFLESAVC----ERNSYAQEIGAMALFNLAV---NNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYL 538 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~----~~d~~~qe~A~~aL~nLs~---~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~ 538 (775)
.|+++-+++.|.+... ..++.-.+.|+.++.+|+. ..+..+. +++.=.++.+...+++... +..||+++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 5777788888873221 2355556777777777752 1222222 2333355555556666543 788999998
Q ss_pred cccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHH
Q 004073 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISG 600 (775)
Q Consensus 539 ~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~ 600 (775)
.++..+ -+..-.-..++....+.|.+..+..++..|+-||..+-++.+....-+++-+.+.
T Consensus 488 ~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 488 QFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 887443 1221111456677777777333778999999999999877765544445433333
No 341
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.51 E-value=75 Score=30.23 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=56.6
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-hHhHHHHHHCCCHHHHHHhhhcC-ChH---HHHHHHHHHHHhHhcc
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVNG-STR---GRDKAQRLLMLFREQR 711 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~g-~~~---~k~kA~~LL~~L~~~~ 711 (775)
.++..|.+-|.+++|.++-.|+.+|-.+..+. +.....+.....+..|..++.+. +.. +|+++..+|......-
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999998888765 45566666667888888877653 443 7999988887776554
No 342
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.44 E-value=7.9e+02 Score=30.00 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=74.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
-++....+. +-.+|..++..|+.+...+.+. ..-+-++.++.|..-|.. ..+.++.+|+.+|..+- +++.+-
T Consensus 89 hlLRg~Esk-dk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~D----rep~VRiqAv~aLsrlQ-~d~~de- 160 (892)
T KOG2025|consen 89 HLLRGTESK-DKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKD----REPNVRIQAVLALSRLQ-GDPKDE- 160 (892)
T ss_pred HHHhcccCc-chhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhc----cCchHHHHHHHHHHHHh-cCCCCC-
Confidence 344444454 7889999999999998754332 222334666666655554 67899999999999984 222111
Q ss_pred HHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCcccccc
Q 004073 510 LMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIG 551 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~ 551 (775)
+..++..+..++++.+..+.--++|.+++.+......|.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIV 199 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHH
Confidence 234677888899888877766677888888776665554
No 343
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=38.96 E-value=99 Score=27.37 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=53.5
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh
Q 004073 599 SGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 670 (775)
Q Consensus 599 ~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~ 670 (775)
...+..+.++.+.++-.++..|..|..... ..+..-++.+..+...|++.++-+-=+|+..|..||...+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 344566778888899999999999988776 2222223566777777888889999999999999997654
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.75 E-value=16 Score=44.10 Aligned_cols=43 Identities=23% Similarity=0.488 Sum_probs=35.8
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQ 325 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~ 325 (775)
+-+.-.|..|.-.+.=|++- .|||.|-++|.+ .+...||.|.-
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 33556899999999999885 999999999988 56778999964
No 345
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=38.58 E-value=77 Score=26.12 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=32.6
Q ss_pred ChhhhhHHHHHHHHHhccCCCCCCCCchhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 131 DPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALTERRALKK 187 (775)
Q Consensus 131 d~~e~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a~~l~i~s~~~~~~E~~~l~k 187 (775)
.+.+.++.+-|.+-+.+. .+.| .+..||+.+|+.|...+..-+.+|++
T Consensus 5 T~rQ~~vL~~I~~~~~~~-----G~~P----t~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 5 TERQKEVLEFIREYIEEN-----GYPP----TVREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp -HHHHHHHHHHHHHHHHH-----SS-------HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc-----CCCC----CHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345566666666666542 1222 56689999999999999988888876
No 346
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.48 E-value=15 Score=38.13 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=29.3
Q ss_pred cCce-ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 293 YDPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 293 ~dPV-~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
.||. +++|+|.||-.|-..-. ...||.|++++..-.+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 5666 45999999988854332 2389999999766667666
No 347
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=38.26 E-value=18 Score=34.97 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=23.3
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHh-cCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLS-DGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~-~~~~~CP~t~~~l~~ 329 (775)
...|.||-| |++|.-.-.....+ .|..+||.|+.+|..
T Consensus 97 ~~~Y~Cp~C------------~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNC------------QSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCC------------CCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 568999954 44554322222222 355789999998753
No 348
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=38.19 E-value=1.2e+02 Score=28.70 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=56.9
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhcCC--hHHHHHHHHHHHHhHhc
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVNGS--TRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~g~--~~~k~kA~~LL~~L~~~ 710 (775)
.++..|-+-|.+++|.++-.|+.+|-.+..+ .......+...+.+..|+.++.... +.+++++..++......
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999888765 4456777778888999998776643 33899988888776654
No 349
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=37.99 E-value=20 Score=36.37 Aligned_cols=44 Identities=20% Similarity=0.466 Sum_probs=35.9
Q ss_pred cccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
-.|.+|..+.-.=+-- .||..|-+.||++++++ ...||.|+.-.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 4899999987665543 67888999999999998 88999997543
No 350
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.38 E-value=30 Score=31.61 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHH
Q 004073 571 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMW 612 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i 612 (775)
-...++..|..|+..++-=..+++.|+++.|+.||.+.+..+
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 455678889999999999999999999999999998877653
No 351
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=37.38 E-value=2.5e+02 Score=25.22 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004073 632 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
.+......+..|++.....+.-.++.++..|..+.... ...+.+..-|++.-|-++-.+-++..+...-.++..
T Consensus 24 dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~-~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 24 DLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP-YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc-HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 33333345556666666666668999999999988776 567788889999998888888888888777777653
No 352
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=37.24 E-value=2.9e+02 Score=27.58 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=71.4
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 634 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~ 634 (775)
.++.++++..+. +..++..|+..|.-+...+=..+. -++|.|+.|..++++.++..|...+..|....++--.-.
T Consensus 9 yl~~Il~~~~~~-~~~vr~~Al~~l~~il~qGLvnP~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSS-DDSVRLAALQVLELILRQGLVNPK----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcCCCChH----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356677777777 888999999988776432211111 167889999999999999999999999987654433221
Q ss_pred hCCCcHHHHHHHhcC--CCHH--H---HHHHHHHHHHhhcCChHhHHHH
Q 004073 635 STPGLVSGLATVLDT--GELI--E---QEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~--~s~~--~---~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
-. .+|..-..+-.. ++.. . ...-.+-|+.+++.+...+...
T Consensus 84 ~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F 131 (187)
T PF12830_consen 84 YS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF 131 (187)
T ss_pred HH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH
Confidence 11 223333333221 1111 1 4555666777777554455444
No 353
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.65 E-value=27 Score=24.65 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=8.3
Q ss_pred CCCCCCCCCCC
Q 004073 316 GHSTCPKTQQK 326 (775)
Q Consensus 316 ~~~~CP~t~~~ 326 (775)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45689999864
No 354
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=36.58 E-value=1.1e+02 Score=36.60 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=75.7
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH------cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS------AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA- 628 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~------aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e- 628 (775)
...++++|++. +.-.+-.-+.+..|+..+..-..++++ +..|..|++-|.+.++-++.+|+.++..++.-+.
T Consensus 301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 45788999988 888888888999999866555556665 2344444444556788888999999999887432
Q ss_pred ---cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 629 ---GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 629 ---~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
.|. ..+...+.-|.+.+..++.+|+.++..|-.
T Consensus 380 ~~~~r~------ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 380 TVGRRH------EVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred ccchHH------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 222 334455666777888999999999888764
No 355
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.43 E-value=7.9e+02 Score=29.13 Aligned_cols=47 Identities=13% Similarity=0.021 Sum_probs=26.2
Q ss_pred HHHHHHHhhccCccccCCC--ChhhHHHHHHHHHHHHHHHHHHhhccCC
Q 004073 28 ALYCKILSVFPSLEASRPR--SKSGIQALCSLHIALEKAKNILHHCSEC 74 (775)
Q Consensus 28 ~~~rri~ll~p~lEe~r~~--~~s~~~~l~~L~~~l~kak~Ll~~c~~~ 74 (775)
..-+++..+--.++|+... .+.-...|..-+..|..+..+.+.+...
T Consensus 186 ~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~ 234 (563)
T TIGR00634 186 ELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNA 234 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3456666666666666532 2344555666666666666665555433
No 356
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.26 E-value=24 Score=44.09 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=37.2
Q ss_pred ccccccccc-----cccCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQ-----LMYDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 282 ~f~CPIs~~-----~m~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.-.|.||++ ..-||-+. .||.-.||.|.+.=..+|+..||.|+.++.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 346888876 35667654 577889999997777899999999998875
No 357
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.24 E-value=25 Score=39.57 Aligned_cols=68 Identities=12% Similarity=0.244 Sum_probs=41.4
Q ss_pred cccccccc-ccccCc---eecCCCCccchHHHHHHHhc-----CCCCCCC--CCCCCCCC---CCcccHHHHHHHHHHHH
Q 004073 282 ELRCPISL-QLMYDP---VIIASGQTYERICIEKWLSD-----GHSTCPK--TQQKLPHL---CLTPNYCVKGLIASWCE 347 (775)
Q Consensus 282 ~f~CPIs~-~~m~dP---V~~~~G~ty~r~~I~~w~~~-----~~~~CP~--t~~~l~~~---~l~pn~~l~~~i~~~~~ 347 (775)
...|+||. +.+.-. .+..|||-||..|..+++.. ....||. |...++.. .+.|+ .++.+.++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 57899998 332221 14579999999999999872 2346776 54555543 23333 45555555554
Q ss_pred HcC
Q 004073 348 MNG 350 (775)
Q Consensus 348 ~~~ 350 (775)
+.-
T Consensus 225 e~~ 227 (384)
T KOG1812|consen 225 EEV 227 (384)
T ss_pred HHh
Confidence 443
No 358
>PHA02862 5L protein; Provisional
Probab=35.81 E-value=26 Score=33.54 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=28.6
Q ss_pred cccccccccCceecCCC-----CccchHHHHHHHh-cCCCCCCCCCCCCCC
Q 004073 285 CPISLQLMYDPVIIASG-----QTYERICIEKWLS-DGHSTCPKTQQKLPH 329 (775)
Q Consensus 285 CPIs~~~m~dPV~~~~G-----~ty~r~~I~~w~~-~~~~~CP~t~~~l~~ 329 (775)
|=||.+-=.|. .-||. .-.-+.|+++|++ .++..||.|+.++.-
T Consensus 5 CWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 5 CWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 55555543333 23443 2345899999997 456789999988753
No 359
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=35.27 E-value=18 Score=38.44 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=18.4
Q ss_pred cccccccccccc--Cc-eecCCCCccchHH
Q 004073 282 ELRCPISLQLMY--DP-VIIASGQTYERIC 308 (775)
Q Consensus 282 ~f~CPIs~~~m~--dP-V~~~~G~ty~r~~ 308 (775)
.|.||+|.+.|. +. ..=+.||+||..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999885 32 2224578887653
No 360
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.06 E-value=1.8e+02 Score=33.52 Aligned_cols=149 Identities=11% Similarity=0.003 Sum_probs=80.3
Q ss_pred cCchHHHHHhh----cCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhCCc
Q 004073 553 SHAVPFLVELC----KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 553 ~g~i~~LV~LL----~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~~ 627 (775)
.|.+..++..+ .++ +...+..|+..|.|.++....+.+-...-.+..++. |....+..+.-+++..|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 45555444444 344 678899999999999987433333222335555555 444445666677777777665543
Q ss_pred ccHHH--HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh---cCC--hHhHHHHHHCCCHHHHHHhhhcCChHHHHHH
Q 004073 628 AGKEE--MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC---NGN--EKCCQMVLQEGVIPALVSISVNGSTRGRDKA 700 (775)
Q Consensus 628 e~~~~--i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc---~~~--~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA 700 (775)
.++.- +.. ...-.+..+..+..++.+-.|...+..|. .+. ......+.+ + ..+|+..+.+.++.+-...
T Consensus 332 ~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k-~-~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 332 SNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKK-R-LAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHh-c-cccceeeeCCCChHHHHHH
Confidence 33331 111 12334455566778888888877666655 332 122222222 2 2334444455555555444
Q ss_pred HHHHHH
Q 004073 701 QRLLML 706 (775)
Q Consensus 701 ~~LL~~ 706 (775)
...++.
T Consensus 408 r~~~~~ 413 (533)
T KOG2032|consen 408 RSELRT 413 (533)
T ss_pred HHHHHh
Confidence 444443
No 361
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=35.03 E-value=6.4e+02 Score=27.63 Aligned_cols=164 Identities=10% Similarity=-0.031 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cChhhhHHhhc--cCchHHHHHHhchhccCCC---------HHHHHHHHH
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLK-DDEEARVFTGA--NGFVVALLRFLESAVCERN---------SYAQEIGAM 495 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak-~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d---------~~~qe~A~~ 495 (775)
...+-..|.+. ....+..+++-|..++. ++......+.. .--.+.|.+++........ +.++...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 33445566666 66778888999999988 66454444433 3345677777743211111 277788887
Q ss_pred HHHHhhc-cCCchhHHHHh-hCcHHHHHHHhccCCh--HHHHHHHHh-ccccc----CCccccccccCchHHHHHhhcCC
Q 004073 496 ALFNLAV-NNNRNKELMLA-AGVIPLLEKMISNSNS--HGAATALYL-NLSFL----DDAKPIIGSSHAVPFLVELCKGK 566 (775)
Q Consensus 496 aL~nLs~-~~~~nk~~i~~-~G~i~~Lv~lL~s~~~--~~~AaaaL~-~Ls~~----~~~k~~I~~~g~i~~LV~LL~~~ 566 (775)
.++.+-. .+..-+..+++ .+.+..+.+-|...+. ......+|. ++..+ ...|..+....++..|+.+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 7666533 23344666664 5678888888877442 233444443 22222 23455666677899999988766
Q ss_pred CCH----HHHHHHHHHHHHhcCCCCChHHHH
Q 004073 567 TEH----QCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 567 ~~~----~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
++ .+.+.+-..|..+|+++.+-...-
T Consensus 217 -~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~ 246 (330)
T PF11707_consen 217 -GEDEKSSVADLVHEFLLALCTDPKHGVCFP 246 (330)
T ss_pred -CCcccchHHHHHHHHHHHHhcCCCcccccC
Confidence 55 788999999999998776544333
No 362
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.74 E-value=1.5e+02 Score=35.88 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred cccCchHHHHHh-hcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC-ChHHHHHHHHHHHHHhCCcc
Q 004073 551 GSSHAVPFLVEL-CKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 551 ~~~g~i~~LV~L-L~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~-~~~i~e~al~~L~nLa~~~e 628 (775)
++.++|..|+.. +++. |.+++..|..+|.-++..+.+ .++..|++|.+. ++-++--++.+|..-|....
T Consensus 551 gnnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 551 GNNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred CchhhHHHhhccccccc-chHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC
Q ss_pred cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH-HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 629 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL-FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L-~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
.++ +|..|=.++.+...-+|+-|+-++ +.++..++..+..+ .|....|..+..+.++.+-.|=-.+|
T Consensus 622 ~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 622 LKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred cHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHHHHHHHHH
No 363
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=33.44 E-value=6.2e+02 Score=26.96 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhhc-------cCCchhHHHHhhCcHHHHHHHhccCC-----h-HHHHHHHHhcccccCCccccccccC
Q 004073 488 YAQEIGAMALFNLAV-------NNNRNKELMLAAGVIPLLEKMISNSN-----S-HGAATALYLNLSFLDDAKPIIGSSH 554 (775)
Q Consensus 488 ~~qe~A~~aL~nLs~-------~~~~nk~~i~~~G~i~~Lv~lL~s~~-----~-~~~AaaaL~~Ls~~~~~k~~I~~~g 554 (775)
...+.++..|..|+. ++.+++..+.=-+.+|.+..-++.+. . ...+|..|..++... . .+
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-~------~~ 149 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-G------LP 149 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-C------Cc
Confidence 455667777777652 12224444444567787777777766 2 234555555555211 0 12
Q ss_pred chHHHHHhhcCC---CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH
Q 004073 555 AVPFLVELCKGK---TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 555 ~i~~LV~LL~~~---~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~ 631 (775)
.+..+......+ ...+....++..|+.-.. ++ .+..++..|+++|.++...++...+.+|..|-..-+-+.
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~ 223 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRS 223 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCC
Confidence 233333333333 134566666666665432 11 223466778999998888999999999999987666655
Q ss_pred HHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 632 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
... ++.|..|+++|.+. -...|+.+|-.+-
T Consensus 224 ~~~--~dlispllrlL~t~---~~~eAL~VLd~~v 253 (262)
T PF14225_consen 224 PHG--ADLISPLLRLLQTD---LWMEALEVLDEIV 253 (262)
T ss_pred Ccc--hHHHHHHHHHhCCc---cHHHHHHHHHHHH
Confidence 533 46899999999753 3456666665544
No 364
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=33.24 E-value=44 Score=32.57 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=33.2
Q ss_pred CccccccccccccCceecCCCC-----ccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQ-----TYERICIEKWLSD-GHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~-----ty~r~~I~~w~~~-~~~~CP~t~~~l~ 328 (775)
.+-.|=||.+-.. +..-||.. -.-++|+++|++. +...||.|++++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3457778877643 34456643 2368999999984 5678999998875
No 365
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.22 E-value=25 Score=38.47 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=36.4
Q ss_pred ccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
--.|=||+.=-+|=|++||=|. .|..|-+.- .-.++.||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L-r~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSL-RYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHH-HHhhcCCCccccchH
Confidence 3589999999999999999885 578776543 223568999999874
No 366
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=33.13 E-value=1.1e+03 Score=29.74 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=91.0
Q ss_pred hCcHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcC-CCCHHHHHHHHHHHHHhcCCCCChH
Q 004073 514 AGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG-KTEHQCKLDALHALYNLSTIPSNIP 590 (775)
Q Consensus 514 ~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~-~~~~~~k~~Al~aL~nLs~~~~nk~ 590 (775)
.+++..|.++....+.. ..-+-+|......+.-...-.++-..|.+..+... ..++.+...+-..+..|+....|..
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 56777777776544321 22333344333344333444445566776666532 1267777777777777776555555
Q ss_pred HHHHcCcHHHHHHhccCCC----hHHHHHHHHHHHHHhCCcc--cHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHH
Q 004073 591 NLLSAGIISGLQSLAVPGD----PMWTEKSLAVLLNLAASAA--GKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLF 663 (775)
Q Consensus 591 ~iv~aG~V~~Lv~LL~~~~----~~i~e~al~~L~nLa~~~e--~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~ 663 (775)
-+.+. .||.|+..|.... ..+..-++.+|..+.+... --..+.. -+.|.+.+..- +++...-.++-.+|.
T Consensus 609 ~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 609 PMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred chHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHH
Confidence 55544 7899999886543 5666777777776655322 1222222 35666666654 567777888888887
Q ss_pred HhhcCChH
Q 004073 664 LLCNGNEK 671 (775)
Q Consensus 664 ~Lc~~~~~ 671 (775)
.+-+.+.+
T Consensus 686 a~Is~~~e 693 (1005)
T KOG2274|consen 686 ALISVTLE 693 (1005)
T ss_pred HHHhcCHH
Confidence 77665433
No 367
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.84 E-value=97 Score=31.06 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=51.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC-CCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 639 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE-GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 639 ~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~-G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
.++.++++..+.+..++..|+.++..+-+..- ... -.+|.|+.|..+.++.++..|..+++.+.+-.+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGL------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 45667777777888888888888877665431 011 158999999999999999999999998865544
No 368
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=32.42 E-value=2.9e+02 Score=26.99 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhcc--CchHHHHHHhchhccCCCHHHHHHHHHHHHHh---
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGAN--GFVVALLRFLESAVCERNSYAQEIGAMALFNL--- 500 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~--G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nL--- 500 (775)
..+..+...|.+. +.+.+-.++.-++.....+. ...+.+. -.+..|+.+|... +...+.+.++.+|..+
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~---~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKP---DPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHH
Confidence 4455666677776 78889999999998887642 3455443 3668888888873 4566677777666554
Q ss_pred hccCCchhHHHHh---hCcHHHHHHHhccCChHHHHHHHHhc
Q 004073 501 AVNNNRNKELMLA---AGVIPLLEKMISNSNSHGAATALYLN 539 (775)
Q Consensus 501 s~~~~~nk~~i~~---~G~i~~Lv~lL~s~~~~~~AaaaL~~ 539 (775)
..+.++-.+.+.. .+.++.++.+++.+...+.++.+|..
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ 140 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALAT 140 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3333443444443 23566666666643334445555443
No 369
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=32.41 E-value=1.4e+02 Score=26.82 Aligned_cols=69 Identities=20% Similarity=0.055 Sum_probs=52.1
Q ss_pred HcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 594 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 594 ~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
..+.+..|++-++.......+.++..|..|..++.+...+..- |++.-|-++-...++..+...-.++-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~i-G~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDI-GAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHc-cHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3456667777777666668899999999999999988888775 88888666666667777766655554
No 370
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=31.73 E-value=4.6e+02 Score=30.29 Aligned_cols=141 Identities=15% Similarity=0.046 Sum_probs=76.3
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHH-HHHHHHhCCcccHHHHh
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSL-AVLLNLAASAAGKEEMN 634 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al-~~L~nLa~~~e~~~~i~ 634 (775)
+..+++.|.+..+...++.|++.|..++.++..+-.=-..=+|..+++.-.+....+...|. .++..|++...
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P------ 404 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP------ 404 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc------
Confidence 45677888873378889999999999988765432222233566666655544443333333 23333343321
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
..+|..+..+|.+.+...--.++..+-.|+.+=..---.-+-..+.|.+++--.+.+..+|+.|+..|
T Consensus 405 --~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCL 472 (516)
T KOG2956|consen 405 --LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCL 472 (516)
T ss_pred --hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhH
Confidence 13455555556553333333333344455543211111111234677777777777888888888644
No 371
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.13 E-value=9.6e+02 Score=28.50 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=39.9
Q ss_pred HHHHHHHhhccCccccCCC--ChhhHHHHHHHHHHHHHHHHHHhhccCCCceeehhhch----HHHHHHHHHHHH
Q 004073 28 ALYCKILSVFPSLEASRPR--SKSGIQALCSLHIALEKAKNILHHCSECSKLYLAITGD----SVLLKFEKARSA 96 (775)
Q Consensus 28 ~~~rri~ll~p~lEe~r~~--~~s~~~~l~~L~~~l~kak~Ll~~c~~~Sklyl~~~~~----~i~~~f~~~~~~ 96 (775)
...+|+.+|--.++||-.. .+.-...|.+-+.-|..+..|.+.|. ..|-++.|| ++......+...
T Consensus 182 e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~---~a~~~L~ge~~~~~~~~~l~~a~~~ 253 (557)
T COG0497 182 ERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQ---NALELLSGEDDTVSALSLLGRALEA 253 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHH---HHHHHHhCCCCchhHHHHHHHHHHH
Confidence 3466777777777777532 23456777777777877777777774 345556553 355554443333
No 372
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.10 E-value=31 Score=34.02 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=17.6
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK 326 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~ 326 (775)
.+.||+| |+|... +....||+|+.+
T Consensus 134 ~~vC~vC------------Gy~~~g--------e~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVC------------GYTHEG--------EAPEVCPICGAP 158 (166)
T ss_pred EEEcCCC------------CCcccC--------CCCCcCCCCCCh
Confidence 7899998 445432 146689999876
No 373
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=30.59 E-value=9e+02 Score=28.01 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=68.3
Q ss_pred cHHHHHHHhccC-Ch--HHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHH-HHHHhcCCCCCh
Q 004073 516 VIPLLEKMISNS-NS--HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALH-ALYNLSTIPSNI 589 (775)
Q Consensus 516 ~i~~Lv~lL~s~-~~--~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~-aL~nLs~~~~nk 589 (775)
.+..++++|... +. +..|..+|..+..+... .+.+ .-+|..+++.-.+. ...+...|.. ++.-|+++..-+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCchh
Confidence 345566666542 21 45566666655443221 1111 12444445544444 3333333333 333444444322
Q ss_pred HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC--cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 590 PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS--AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 590 ~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~--~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
.. ..+..++...+...--.++..+..|+.. .+.-..++ ....|.+++.-.+.+..+|..||.+|..+-.
T Consensus 407 ~I-------~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 CI-------VNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HH-------HHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 21 1222322222222223334444555442 12222233 3678888888889999999999999988754
No 374
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.47 E-value=1.4e+02 Score=35.12 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=63.5
Q ss_pred cCchHHHHHh-hcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccC-CChHHHHHHHHHHHHHhCCcccH
Q 004073 553 SHAVPFLVEL-CKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAAGK 630 (775)
Q Consensus 553 ~g~i~~LV~L-L~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e~~ 630 (775)
.|++..|+.. +.++ +.+++++|..||.-+|..+.+ .++..|++|.+ .++-++.-.+-+|..-|.....+
T Consensus 550 ~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccC-chHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 5778888887 5666 999999999999988876654 45566776644 56666666666666666544332
Q ss_pred HHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 631 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 631 ~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
. ++..|-.++....+-+++.|+-++.-+.
T Consensus 621 ~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 621 V-------ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred H-------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 2 2333444455566666776666554443
No 375
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=30.46 E-value=6.3e+02 Score=26.17 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChHH--HHHHHHhcccccCCccccccccCchHHHHHh
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG--AATALYLNLSFLDDAKPIIGSSHAVPFLVEL 562 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~--~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~L 562 (775)
.++..+...+.+|-.++.+++.+.. -++..|..+...+...- .+...+..+-..+ .+ .. +.+..++..
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r--~f--~~L~~~L~~ 82 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DR--HF--PFLQPLLLL 82 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-ch--HH--HHHHHHHHH
Confidence 7889999999999999864312222 23444555555554322 2333333332221 11 11 444444444
Q ss_pred h--------cC-CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc-cCCChHHHHHHHHHHHHHh
Q 004073 563 C--------KG-KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA-VPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 563 L--------~~-~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL-~~~~~~i~e~al~~L~nLa 624 (775)
+ .+ ....+.....+.++..+|....+ .-...++.+..+| .+.+..++..++..|..||
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1 11 11345555556788888866555 2233667777788 6777888899999999999
No 376
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.27 E-value=7.7e+02 Score=29.45 Aligned_cols=100 Identities=24% Similarity=0.179 Sum_probs=67.8
Q ss_pred cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CChHh
Q 004073 595 AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN--GNEKC 672 (775)
Q Consensus 595 aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~--~~~~~ 672 (775)
+|.+..+++-+.+.+..++..++.+|+.+..+-......+.+ |.+..|.+-+-...+.++-.|+.+|..+-. .++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N-~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLAN-GLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 456666677777888889999999999998765544455553 788888888888888999998888866542 22222
Q ss_pred HHHHHHCCCHHHHHHhh-hcCChHHHHHHHH
Q 004073 673 CQMVLQEGVIPALVSIS-VNGSTRGRDKAQR 702 (775)
Q Consensus 673 ~~~v~~~G~i~~Lv~Ll-~~g~~~~k~kA~~ 702 (775)
. ++..|+.++ .+++.++|+.|..
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 223444443 4467777776643
No 377
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=30.08 E-value=15 Score=37.82 Aligned_cols=45 Identities=24% Similarity=0.602 Sum_probs=33.7
Q ss_pred Cccccccccc-cccCc--eec--C-CCCccchHHHHHHHhcCCCCCC--CCCC
Q 004073 281 EELRCPISLQ-LMYDP--VII--A-SGQTYERICIEKWLSDGHSTCP--KTQQ 325 (775)
Q Consensus 281 ~~f~CPIs~~-~m~dP--V~~--~-~G~ty~r~~I~~w~~~~~~~CP--~t~~ 325 (775)
.+-+||||.. .+-.| +++ | |=|..|-+|..+-|..|...|| -|+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 4678999863 33333 332 4 8899999999999999999999 4643
No 378
>PRK14707 hypothetical protein; Provisional
Probab=30.04 E-value=1.7e+03 Score=31.08 Aligned_cols=262 Identities=17% Similarity=0.068 Sum_probs=139.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHH-HhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF-NLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~-nLs~~~ 504 (775)
..+..++.-++.=.+......|+..|.....++...+.. .+.-.|...++-|+.. .+..+..+|+.+|- .++ .+
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~-~~~q~va~~lN~lsKw---p~~~~C~~a~~~lA~rl~-~~ 279 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE-LKPQELGNALNALSKW---ADTPVCAAAASALAERLV-DD 279 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh-CChHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHh-hh
Confidence 445566666654434556667777777777665544443 4555666777777653 56666666766663 443 23
Q ss_pred CchhHHHHhhCcHHHHHHHhcc-CChH---HHHHHHHhcccccCCccccccccCchHHHHHhhcC-CCCHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISN-SNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG-KTEHQCKLDALHAL 579 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s-~~~~---~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~-~~~~~~k~~Al~aL 579 (775)
..-+..+-.. -+.-.++-|+. .+.. ..|..+-..|....+-+..+-. ..+...++-|.. +.+..+.+.|...-
T Consensus 280 ~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~-~~~~~~LNalsKWpd~~~C~~Aa~~LA 357 (2710)
T PRK14707 280 PGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNA-RGLSTALNALSKWPDNPVCAAAVSALA 357 (2710)
T ss_pred HHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccch-HHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 3334433222 22222333322 3322 2333333456665554444432 233344444432 22566777776666
Q ss_pred HHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHH-HHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHH
Q 004073 580 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL-NLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQ 657 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~-nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~ 657 (775)
..|+.+++-+..+--.|+-..|-.+-+.++...+..++..|. .|+.+.+-+..+-. ..|..+++-|.. .+..+...
T Consensus 358 ~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~--Q~van~lnalsKWPd~~~C~~ 435 (2710)
T PRK14707 358 ERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP--QGVSNALNALAKWPDLPICGQ 435 (2710)
T ss_pred HHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch--hhHHHHHHHhhcCCcchhHHH
Confidence 677777766665554444444444545565555555555444 45666666666543 467777777763 56666667
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHH
Q 004073 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRG 696 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~ 696 (775)
++..|..--..+.+.++.+--.++...|=-|.+=.+.++
T Consensus 436 aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~ 474 (2710)
T PRK14707 436 AVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPI 474 (2710)
T ss_pred HHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChh
Confidence 777765544455455544433344444434444444443
No 379
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.18 E-value=3.7e+02 Score=35.41 Aligned_cols=127 Identities=8% Similarity=0.046 Sum_probs=82.6
Q ss_pred HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCC--hHHHHHcCcHHHHHHhccCC
Q 004073 531 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN--IPNLLSAGIISGLQSLAVPG 608 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~n--k~~iv~aG~V~~Lv~LL~~~ 608 (775)
.+|.++.+.|+...+.-..+ .+.+..++..|..+ ...++..|+++|.++..-+.. ....|..|+... +.+.
T Consensus 795 ~~a~li~~~la~~r~f~~sf--D~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Ds 867 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARSFSQSF--DPYLKLILSVLGEN-AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDS 867 (1692)
T ss_pred hhHHHHHHHHHhhhHHHHhh--HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccc
Confidence 44555555555433221111 35678888888877 889999999999999865542 233344444443 3355
Q ss_pred ChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh
Q 004073 609 DPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 670 (775)
Q Consensus 609 ~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~ 670 (775)
...+++.|+..+.....+ ++--.+ .-..+.+-+..++-.+|.+++.+|..+|...+
T Consensus 868 sasVREAaldLvGrfvl~~~e~~~q------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPELIFQ------YYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHHHHH------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 677889999998855432 222222 23345555667889999999999999997543
No 380
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.12 E-value=9.4e+02 Score=28.58 Aligned_cols=93 Identities=20% Similarity=0.130 Sum_probs=57.2
Q ss_pred cCchHHHHHhhc----CCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC---ChHHHHHHHHHHHHHhC
Q 004073 553 SHAVPFLVELCK----GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG---DPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 553 ~g~i~~LV~LL~----~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~---~~~i~e~al~~L~nLa~ 625 (775)
...++.|...|. .+ +..-+..++.||.|+-. ...++.|..++... ...++-.|+.+|..++.
T Consensus 485 ~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 456777777766 34 67889999999999942 23788888877654 46667778888877644
Q ss_pred CcccHHHHhhCCCcHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 004073 626 SAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAVSCLFL 664 (775)
Q Consensus 626 ~~e~~~~i~~~~g~I~~Lv~lL~~--~s~~~~e~Av~~L~~ 664 (775)
... . .+.+.|..+..+ ..+++|-.|+.+|..
T Consensus 554 ~~~--~------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 554 HCP--E------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp T-H--H------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cCc--H------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 321 1 234556666654 345566665544444
No 381
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.04 E-value=2.8e+02 Score=25.04 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=50.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhh------hcCChHHHHHHHHHHHHhH
Q 004073 639 LVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSIS------VNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 639 ~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll------~~g~~~~k~kA~~LL~~L~ 708 (775)
++..|.+.|.+.++.++-.|+.+|-.+..+ ++.....+.....+..++.+. ..-+..+|+++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 566777778888999999999999999865 455666666666555554431 1226788999999887653
No 382
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=28.75 E-value=4.7e+02 Score=31.14 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchh
Q 004073 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 508 (775)
Q Consensus 429 ~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk 508 (775)
--++..+.+. +-.+|...+..|+.+...-.+.- ....+|.++.|..-+-. ..+.++..|+.+|..+-. ...|-
T Consensus 94 ~h~lRg~esk-dk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~D----RE~~VR~eAv~~L~~~Qe-~~~ne 166 (885)
T COG5218 94 YHLLRGTESK-DKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFD----REKAVRREAVKVLCYYQE-MELNE 166 (885)
T ss_pred HHHHhcccCc-chhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHh-ccCCh
Confidence 3344455555 78899999999988874322221 23346777777665544 578899999999988742 22221
Q ss_pred HHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCcccccc
Q 004073 509 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIG 551 (775)
Q Consensus 509 ~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~ 551 (775)
. ......|+.++++.++.+.--++|.|++.+......|.
T Consensus 167 e----n~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~Il 205 (885)
T COG5218 167 E----NRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCIL 205 (885)
T ss_pred H----HHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHH
Confidence 1 12334778888887776666667778887665554443
No 383
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=28.72 E-value=2e+02 Score=34.62 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=82.7
Q ss_pred HHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccc
Q 004073 472 VALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKP 548 (775)
Q Consensus 472 ~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~ 548 (775)
..++.+|....+..+..+|+.++..+-.++..-+ ...+..-++|.|-.+-..... +.+++.++..+... -.+.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-lD~~ 463 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-LDKA 463 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-HHHH
Confidence 3334444443334889999999998888764222 445666788888887433322 35566666555511 1112
Q ss_pred cccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCCh
Q 004073 549 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP 610 (775)
Q Consensus 549 ~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~ 610 (775)
.+ ..-+.++.+-.+.. ++.++...+.+..++....-+...++...++|.++.+...+..
T Consensus 464 ~v--~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 464 AV--LDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred Hh--HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccc
Confidence 22 24455566666666 8888888888888887766665556667788888887766543
No 384
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.31 E-value=2.3e+02 Score=34.23 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=72.2
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004073 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
.|.+..|++-..+. +..++...+..|.-|+........-+-.|....|..-+.+..+.++.+|+-+|..+=..+..-+
T Consensus 84 ~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE- 161 (892)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence 45666666666666 8889999999998888766666666777777777776777888899999999999875332211
Q ss_pred HhhCCCcHHHHHHHhcC-CCHHHHHHHH
Q 004073 633 MNSTPGLVSGLATVLDT-GELIEQEQAV 659 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~-~s~~~~e~Av 659 (775)
-.++-.++.+++. +|++++..|+
T Consensus 162 ----~~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 162 ----CPVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred ----ccHHHHHHHHHhcCCcHHHHHHHH
Confidence 1345566777764 5777777643
No 385
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=27.79 E-value=8.9e+02 Score=27.03 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHHhccCh--hhhHHhhccCchHHHHHHhchhccC-------CCHHHHHHHHHHHHHhhccCCchhHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDE--EARVFTGANGFVVALLRFLESAVCE-------RNSYAQEIGAMALFNLAVNNNRNKEL 510 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~--~nr~~i~~~G~I~~Lv~lL~s~~~~-------~d~~~qe~A~~aL~nLs~~~~~nk~~ 510 (775)
+.+.|..|-..|.+..+..+ ..+..+ ..=++.|++++..+... .+..+-.+|+.+|..+-. +..--..
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l--~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~~~ 82 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQAL--QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIVST 82 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHHhh
Confidence 45566666666655554322 112222 22244555555433222 356777888888888843 3332222
Q ss_pred HHhh--C-cHHHHHHHhccCCh-HHHHHHHHhcccccCCccccccccCchHHHHHhhc---CC-CCHHHHHHHHHHHHHh
Q 004073 511 MLAA--G-VIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GK-TEHQCKLDALHALYNL 582 (775)
Q Consensus 511 i~~~--G-~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~---~~-~~~~~k~~Al~aL~nL 582 (775)
+-+. . .+...+..|..++. +..+...|.-|+... ....+.....+..|+..+. ++ .+..+...++.++.+|
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 2211 1 45666666765554 444444444444332 2222333444444544443 21 2566778888888888
Q ss_pred cCCCCChHHHHH-cC-cHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 583 STIPSNIPNLLS-AG-IISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 583 s~~~~nk~~iv~-aG-~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
... ....|++ ++ -++.|+..+-+....++..|..++..+.
T Consensus 162 l~q--~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 162 LSQ--FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 653 3334444 33 6677777555555666666666666554
No 386
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=27.69 E-value=3.5e+02 Score=26.35 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+.+.-|+..|+.+.++..|+++++.|..+-.=++.....+.... + .......+..... ..+.+... .
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~------~~~~~~~~~~~~~---~~l~~~~~--~ 76 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--D------SKSSENSNDESTD---ISLPMMGI--S 76 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--C------ccccccccccchh---hHHhhccC--C
Confidence 34445566666666799999999999988776554333221110 0 0000000111111 11222211 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
..-....-..++..|+.+|+..+- ...++.++.++-.....+..-.-..++|.++..+++. +...++.-+.-|..|
T Consensus 77 ~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~-~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 77 PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC-PDSLREFYFQQLADL 155 (160)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 122333344577888888876653 2334444433332222222111157899999999977 667777766666655
No 387
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=27.27 E-value=4.3e+02 Score=31.46 Aligned_cols=165 Identities=19% Similarity=0.153 Sum_probs=90.9
Q ss_pred cHHHHHHHhccCCh-HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCC---CCHHHHHHHHHHHHHhc----CCC
Q 004073 516 VIPLLEKMISNSNS-HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGK---TEHQCKLDALHALYNLS----TIP 586 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~---~~~~~k~~Al~aL~nLs----~~~ 586 (775)
++..+..++.++.. ...|+.+|..|...- .-- ...+..+..|++.. .++.++..|+-++..|. ...
T Consensus 396 av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 67788888877554 344666665554322 111 23456677777642 25667777887777774 331
Q ss_pred ------CChHHHHHcCcHHHHHHhcc----CCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC---CHH
Q 004073 587 ------SNIPNLLSAGIISGLQSLAV----PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG---ELI 653 (775)
Q Consensus 587 ------~nk~~iv~aG~V~~Lv~LL~----~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~---s~~ 653 (775)
..+...+..-.++.|...+. .++..-+..++.+|.|+-. +..++.|..++... +..
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchH
Confidence 12222333446677776554 3455556778888888742 34677777777655 667
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHH
Q 004073 654 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLL 704 (775)
Q Consensus 654 ~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL 704 (775)
+|-.|+.+|..+....+.. +.+.|+.+..+. +.++|-.|..+|
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 8888888888775554322 234555555553 445555555443
No 388
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=26.99 E-value=51 Score=41.74 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=28.2
Q ss_pred CCCCCcccccccc--ccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 277 PLPPEELRCPISL--QLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 277 ~~~p~~f~CPIs~--~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
-++|.+++||=|. +...|+ .+-+|.-. -...||+|+.+|.
T Consensus 909 NPL~PHY~Cp~Cky~Ef~~d~-svgsGfDL-----------pdK~CPkCg~pl~ 950 (1444)
T COG2176 909 NPLPPHYLCPECKYSEFIDDG-SVGSGFDL-----------PDKDCPKCGTPLK 950 (1444)
T ss_pred CCCCccccCCCCceeeeecCC-CcCCCCCC-----------CCCCCCcCCCccc
Confidence 3567899999986 456666 33444322 4679999999975
No 389
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=26.74 E-value=32 Score=33.29 Aligned_cols=23 Identities=26% Similarity=0.785 Sum_probs=16.8
Q ss_pred CCCCccchHHHHHHHhc----------CCCCCCCCCCC
Q 004073 299 ASGQTYERICIEKWLSD----------GHSTCPKTQQK 326 (775)
Q Consensus 299 ~~G~ty~r~~I~~w~~~----------~~~~CP~t~~~ 326 (775)
.+||+||- ||.. |.-+||+|+..
T Consensus 9 ~~gH~FEg-----WF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFEG-----WFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCccce-----ecCCHHHHHHHHHcCCccCCCCCCC
Confidence 35899964 8863 45689999854
No 390
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.59 E-value=3.8e+02 Score=24.20 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchh--ccCCCHHHHHHHHHHHHHh
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESA--VCERNSYAQEIGAMALFNL 500 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~--~~~~d~~~qe~A~~aL~nL 500 (775)
+.+..+..+|.+. ++.++.+|+..|..++++. +.....++...++..++++.... ....+..+++.+..++...
T Consensus 37 ~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4555667788888 9999999999999999875 45666677777777776652221 1123667777776665543
No 391
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=26.36 E-value=30 Score=27.07 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=11.3
Q ss_pred CCCCccccccccc
Q 004073 278 LPPEELRCPISLQ 290 (775)
Q Consensus 278 ~~p~~f~CPIs~~ 290 (775)
.+|++|.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 392
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=26.20 E-value=54 Score=28.02 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=21.8
Q ss_pred cccccccccc-----cCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLM-----YDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 283 f~CPIs~~~m-----~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
-.|.||++=. -+|.+. .||--.||.|.+.=..+|+..||.|+.++.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 3577776522 344443 467788999999989999999999987764
No 393
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=25.84 E-value=35 Score=27.16 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=19.5
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.|.||.|++-+.=|=... |..+ .||.|+..|.-
T Consensus 2 ~~~CP~CG~~iev~~~~~-GeiV--------------~Cp~CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEIELENPEL-GELV--------------ICDECGAELEV 34 (54)
T ss_pred ccCCCCCCCEEecCCCcc-CCEE--------------eCCCCCCEEEE
Confidence 478999988543221111 3322 79999877643
No 394
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=25.44 E-value=46 Score=38.77 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=32.9
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCH
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI 682 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i 682 (775)
+.|..||+.|-..+.+-.+--+.=|.++|.++.++.-.+-+.|+|
T Consensus 486 ~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGVi 530 (812)
T KOG1451|consen 486 DAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVI 530 (812)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhccccccccccee
Confidence 457888888866666666777777888888777777777777753
No 395
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.38 E-value=9.9 Score=31.83 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=21.0
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+..||.|.+.| .-..|+.+|-.|-..+.. ...||.|+++|.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECcccccccee--cccCCCcccHHH
Confidence 46899998753 333477777777443221 357999999874
No 396
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.31 E-value=2.5e+02 Score=30.90 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHcC--cHHHHHHhccCC---ChHHHHHHHHHHHHHhCCcccHHHHhh------CCCc
Q 004073 571 CKLDALHALYNLSTIPSNIPNLLSAG--IISGLQSLAVPG---DPMWTEKSLAVLLNLAASAAGKEEMNS------TPGL 639 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~nk~~iv~aG--~V~~Lv~LL~~~---~~~i~e~al~~L~nLa~~~e~~~~i~~------~~g~ 639 (775)
++-.|+..|..+...+..-..+...+ .+.-|++++..+ ...++..|+.+|..++........|+. .-|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 45556666666666666677777766 888899988643 367788899999999886654444433 1266
Q ss_pred HHHHHHH
Q 004073 640 VSGLATV 646 (775)
Q Consensus 640 I~~Lv~l 646 (775)
++.+++.
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 6665543
No 397
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.26 E-value=37 Score=38.72 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=51.5
Q ss_pred CCCCCccccccc-cccccCceec--CCCCccchHHHHHHHhc-CCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 004073 277 PLPPEELRCPIS-LQLMYDPVII--ASGQTYERICIEKWLSD-GHSTCPKTQQKLPHLCLTPNYCVKGLIASWCE 347 (775)
Q Consensus 277 ~~~p~~f~CPIs-~~~m~dPV~~--~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~ 347 (775)
...|++..||+| .+.|.|-+.+ .|+.+||-.||++.+-. +...|+.|.. ....+.|+..++..+..-..
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINRILA 286 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHHHHh
Confidence 467899999999 9999999988 68999999999998764 3345666543 23456777777776655433
No 398
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.09 E-value=64 Score=27.06 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.5
Q ss_pred CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004073 299 ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336 (775)
Q Consensus 299 ~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~ 336 (775)
.--+|||..|-+.-| +..||.|+-.|.....+|.-
T Consensus 26 tfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa 60 (84)
T COG3813 26 TFECTFCADCAENRL---HGLCPNCGGELVARPIRPAA 60 (84)
T ss_pred EEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHH
Confidence 346899999998777 45999999888777777753
No 399
>PHA03096 p28-like protein; Provisional
Probab=25.08 E-value=42 Score=36.15 Aligned_cols=43 Identities=19% Similarity=0.516 Sum_probs=29.8
Q ss_pred cccccccccccC--------ceecCCCCccchHHHHHHHhcC--CCCCCCCCC
Q 004073 283 LRCPISLQLMYD--------PVIIASGQTYERICIEKWLSDG--HSTCPKTQQ 325 (775)
Q Consensus 283 f~CPIs~~~m~d--------PV~~~~G~ty~r~~I~~w~~~~--~~~CP~t~~ 325 (775)
-.|-||++.-.+ =++..|.|+||-.||..|-.+. ..+||.|++
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 457787775432 2234689999999999998643 456777754
No 400
>PLN02400 cellulose synthase
Probab=25.01 E-value=38 Score=42.59 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=36.0
Q ss_pred cccccccc-----ccCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 284 RCPISLQL-----MYDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 284 ~CPIs~~~-----m~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.|.||++= .-||-+. .||--.||.|.|.=-.+|+..||.|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 89998863 5566554 577789999997667789999999998875
No 401
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=24.85 E-value=8e+02 Score=25.51 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC---------C---------hHHHHHHHHHHHHHhCCccc
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG---------D---------PMWTEKSLAVLLNLAASAAG 629 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~---------~---------~~i~e~al~~L~nLa~~~e~ 629 (775)
+..-...++..+..|...++....+.+.+.++.+.+.|..- + ..+...=...|..|+.++.|
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 45666777777777777777666666778888777755321 1 12333455678888999999
Q ss_pred HHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHH-HhhhcCChHHHHHHHHHHHHhH
Q 004073 630 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV-SISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv-~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
...+-.. +....+.++....+. ......+|.+|=... .|-.-.++ ..+.+++..+|..|.+.|+.+-
T Consensus 157 l~lLe~~-~if~~l~~i~~~~~~--~~l~klil~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERW-NIFTMLYHIFSLSSR--DDLLKLILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHC-CHHHHHHHHHccCch--HHHHHHHHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 8766664 888888888876433 222222334442222 22233333 6788999999999999988764
No 402
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.51 E-value=50 Score=23.96 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=18.6
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
.+|.||-|+..+.-...... .....||.|+..+
T Consensus 4 Y~y~C~~Cg~~fe~~~~~~~--------------~~~~~CP~Cg~~~ 36 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKISD--------------DPLATCPECGGDV 36 (41)
T ss_pred EEEEcCCCCCEEEEEEecCC--------------CCCCCCCCCCCcc
Confidence 67888766665443221110 1345799998743
No 403
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.43 E-value=39 Score=35.90 Aligned_cols=27 Identities=19% Similarity=0.540 Sum_probs=21.5
Q ss_pred ccchHHHHHHHhc------------CCCCCCCCCCCCCC
Q 004073 303 TYERICIEKWLSD------------GHSTCPKTQQKLPH 329 (775)
Q Consensus 303 ty~r~~I~~w~~~------------~~~~CP~t~~~l~~ 329 (775)
-.||+|+-+||.. |..+||.|++.++-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 5789999999852 45789999988754
No 404
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.93 E-value=4.7e+02 Score=24.93 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHH-HHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVA-LLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~-Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+-.+|.++.+..++..|+..|..++++. ......|+..+++.- |++++.... .....++...+..+...+
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~-~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKN-NPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccC-CCcHHHHHHHHHHHHHHH
Confidence 4666777778875447889999999999999986 456667888999987 999996311 124578888888887775
No 405
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.91 E-value=1.9e+02 Score=26.67 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=31.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHH
Q 004073 639 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ 678 (775)
Q Consensus 639 ~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~ 678 (775)
+|+.|+.-|.+.++.+...|+.+|...|... .+...++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999999999999999999876 45444443
No 406
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=23.68 E-value=57 Score=25.00 Aligned_cols=29 Identities=28% Similarity=0.723 Sum_probs=17.8
Q ss_pred ceecCCCC-----ccchHHHHHHHh-cCCCCCCCC
Q 004073 295 PVIIASGQ-----TYERICIEKWLS-DGHSTCPKT 323 (775)
Q Consensus 295 PV~~~~G~-----ty~r~~I~~w~~-~~~~~CP~t 323 (775)
|.+.||+- -.=+.|+++|+. .++.+|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67777642 335889999997 467779876
No 407
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.04 E-value=5e+02 Score=30.25 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=69.7
Q ss_pred cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHH---hhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCC-
Q 004073 595 AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGN- 669 (775)
Q Consensus 595 aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i---~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~- 669 (775)
.+.|+.+++.+. .+.+.+--+.++. +..+++...+ +...+.|+.|+.+|. ..++..+.+|+.+|..|.+-+
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456666666554 3344444444444 3333344433 334699999999998 457889999998887774311
Q ss_pred ------------hHhHHHHHHCCCHHHHHHhhh--cCChHHHHHHHHHHHHhHhccC
Q 004073 670 ------------EKCCQMVLQEGVIPALVSISV--NGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 670 ------------~~~~~~v~~~G~i~~Lv~Ll~--~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
..-.+.+..+..|..|+..+- .++..+-....-++.++|+...
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknns 152 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNS 152 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhccc
Confidence 233556666778899986655 4444444444457777866533
No 408
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.73 E-value=35 Score=26.32 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=8.3
Q ss_pred CCCCccccccccc
Q 004073 278 LPPEELRCPISLQ 290 (775)
Q Consensus 278 ~~p~~f~CPIs~~ 290 (775)
.+|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5799999999964
No 409
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=22.62 E-value=81 Score=31.22 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=20.4
Q ss_pred hHHHHHH---HhcCCCCCCCCCCCCCCC-CCcc
Q 004073 306 RICIEKW---LSDGHSTCPKTQQKLPHL-CLTP 334 (775)
Q Consensus 306 r~~I~~w---~~~~~~~CP~t~~~l~~~-~l~p 334 (775)
|...++. ...|++.||.|++|+++. ++.|
T Consensus 142 Rafa~Ra~~VVaAGRP~CPlCg~PldP~GH~Cp 174 (177)
T TIGR03847 142 RAFAKRARRVVAAGRPPCPLCGRPIDPDGHICP 174 (177)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCCccCC
Confidence 4444443 457999999999999754 5544
No 410
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=22.45 E-value=4.7e+02 Score=27.95 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=50.0
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChH--HHHHcCcHHHHHHhc----c--------CCChHHHHHHHHH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIP--NLLSAGIISGLQSLA----V--------PGDPMWTEKSLAV 619 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~--~iv~aG~V~~Lv~LL----~--------~~~~~i~e~al~~ 619 (775)
=.+|+++.++++. ++..|..++.+|..+...-.... .+.+.|..+.+-+.+ . +....+...+..+
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4789999999998 99999999999999986443332 355677665544422 2 2345566777777
Q ss_pred HHHHhC
Q 004073 620 LLNLAA 625 (775)
Q Consensus 620 L~nLa~ 625 (775)
|..|+.
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 777754
No 411
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=21.95 E-value=43 Score=32.60 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=18.0
Q ss_pred CccccccccccccCceecCCC
Q 004073 281 EELRCPISLQLMYDPVIIASG 301 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G 301 (775)
++.+||||++--.+.|++-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467999999999999998553
No 412
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.90 E-value=47 Score=38.16 Aligned_cols=69 Identities=19% Similarity=0.109 Sum_probs=47.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHc-CcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 557 PFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA-GIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 557 ~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~a-G~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
..+.+.+.-+.+++++..|..++.|++.+.+||...+-. ..-..+++++....+.+-+.+..+|..+-.
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 344444444448999999999999999999998876643 344556777766555555666666655543
No 413
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.75 E-value=62 Score=29.40 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=15.5
Q ss_pred ccccccccccc----cCceecC-CCCccchHHH
Q 004073 282 ELRCPISLQLM----YDPVIIA-SGQTYERICI 309 (775)
Q Consensus 282 ~f~CPIs~~~m----~dPV~~~-~G~ty~r~~I 309 (775)
...||=|+.-| +||++.| ||.+|-|+..
T Consensus 9 KridPetg~KFYDLNrdPiVsPytG~s~P~s~f 41 (129)
T COG4530 9 KRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYF 41 (129)
T ss_pred cccCccccchhhccCCCccccCcccccchHHHH
Confidence 45667666544 4565554 5666655443
No 414
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.57 E-value=1.9e+02 Score=34.07 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=47.3
Q ss_pred cCcHHHHHHh-ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCC
Q 004073 595 AGIISGLQSL-AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 595 aG~V~~Lv~L-L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
.|+|..|+.. +++++..++..|+-+|.-+|..+ ...+...|++|. +.++.++.-.+-+|..-|.+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 4677778875 67788888899998888877542 355666777776 457777777777776666543
No 415
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=21.55 E-value=58 Score=30.91 Aligned_cols=43 Identities=16% Similarity=0.463 Sum_probs=32.5
Q ss_pred ccccccccccccC--cee-cCCCC------ccchHHHHHHHhcCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYD--PVI-IASGQ------TYERICIEKWLSDGHSTCPKTQQ 325 (775)
Q Consensus 282 ~f~CPIs~~~m~d--PV~-~~~G~------ty~r~~I~~w~~~~~~~CP~t~~ 325 (775)
..-|.||.+-..+ =|+ +++|. -||..|+++|-. .+...|.-|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccc
Confidence 6789999998888 554 57775 488999999964 3667787543
No 416
>PRK10869 recombination and repair protein; Provisional
Probab=21.41 E-value=1.4e+03 Score=27.09 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=67.1
Q ss_pred HHHHHHHhhccCccccCCC--ChhhHHHHHHHHHHHHHHHHHHhhccCCCceeehhhc-h--HHHHHHHHHHHHHHHHHH
Q 004073 28 ALYCKILSVFPSLEASRPR--SKSGIQALCSLHIALEKAKNILHHCSECSKLYLAITG-D--SVLLKFEKARSALAESLR 102 (775)
Q Consensus 28 ~~~rri~ll~p~lEe~r~~--~~s~~~~l~~L~~~l~kak~Ll~~c~~~Sklyl~~~~-~--~i~~~f~~~~~~l~~~L~ 102 (775)
...+|+..+--.++||... .+.-...|..-+..|..+..+.+.+...- -++.+ + .+...+..+...|..
T Consensus 182 ~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~---~~L~~~~~~~~~~~l~~~~~~l~~--- 255 (553)
T PRK10869 182 ERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNAL---QLLADGEEVNILSQLYSAKQLLSE--- 255 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCcccHHHHHHHHHHHHHH---
Confidence 3456667777677777532 23445556666666666666666554331 11222 1 344444443333222
Q ss_pred HhhhcCC---------hhHHHHHHHHHHHHhhhhccCChhhhhHHHHHHHHHhccCCCCCCCCchhHHHHHHHHhhcCCC
Q 004073 103 RVEDIVP---------QSIGCQILEIVNELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGIT 173 (775)
Q Consensus 103 ~~~~~~p---------~~~~~~i~~~~~~l~~~~f~~d~~e~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a~~l~i~ 173 (775)
+...-| .+...+++++..+++...-.++.+++++ +.|.+ .+..+..+..|-| .
T Consensus 256 -~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l-~~ie~---------------Rl~~l~~L~rKyg-~ 317 (553)
T PRK10869 256 -LIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRL-AELEQ---------------RLSKQISLARKHH-V 317 (553)
T ss_pred -HhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-HHHHH---------------HHHHHHHHHHHhC-C
Confidence 111111 1112345555555554332222222221 11111 1345556667777 4
Q ss_pred CHHHHHHHHHHHHHHHHHhh
Q 004073 174 SSRAALTERRALKKLIERAR 193 (775)
Q Consensus 174 s~~~~~~E~~~l~k~~~~~~ 193 (775)
|..++..-...++++++...
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 67777766666666665544
No 417
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.08 E-value=88 Score=33.70 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=35.6
Q ss_pred CCccccccccccc--------------cCc-----eecCCCCccchHHHHHHHhc----C----CCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLM--------------YDP-----VIIASGQTYERICIEKWLSD----G----HSTCPKTQQKLPHL 330 (775)
Q Consensus 280 p~~f~CPIs~~~m--------------~dP-----V~~~~G~ty~r~~I~~w~~~----~----~~~CP~t~~~l~~~ 330 (775)
+.+-.||+|+.+= -|+ -.-||||.........|-+- | +..||.|.+.|...
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 5678899987642 121 12489999988888888652 2 45799998888643
No 418
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.04 E-value=51 Score=23.49 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q 004073 317 HSTCPKTQQK 326 (775)
Q Consensus 317 ~~~CP~t~~~ 326 (775)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3589999875
No 419
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.01 E-value=4.3e+02 Score=32.61 Aligned_cols=192 Identities=17% Similarity=0.215 Sum_probs=96.2
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHh-hccCCchhHHHHhhCcHH-----HHHHHhcc---CChH--HHHHHHH
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNL-AVNNNRNKELMLAAGVIP-----LLEKMISN---SNSH--GAATALY 537 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nL-s~~~~~nk~~i~~~G~i~-----~Lv~lL~s---~~~~--~~AaaaL 537 (775)
..+|.++++|.+ +...+...|+.++-.+ .. .+.+...+..++-++ .+..+... +... +-.+.++
T Consensus 498 ~~~p~li~~L~a----~s~vvhsYAA~aiEkil~v-re~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaI 572 (960)
T KOG1992|consen 498 ALLPRLIRFLEA----ESRVVHSYAAIAIEKLLTV-RENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAI 572 (960)
T ss_pred HHHHHHHHhccC----cchHHHHHHHHHHHhcccc-ccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHH
Confidence 467888999987 6667777777777443 33 233334444433222 23333322 2211 3344444
Q ss_pred h-cccccCCccccccccCchHHHH----HhhcCCCCHHHHHHHHHHHHHh----cCCCCChHHHHHcCcHHHHHHhccCC
Q 004073 538 L-NLSFLDDAKPIIGSSHAVPFLV----ELCKGKTEHQCKLDALHALYNL----STIPSNIPNLLSAGIISGLQSLAVPG 608 (775)
Q Consensus 538 ~-~Ls~~~~~k~~I~~~g~i~~LV----~LL~~~~~~~~k~~Al~aL~nL----s~~~~nk~~iv~aG~V~~Lv~LL~~~ 608 (775)
. .++..++.-...+ ...+..|. .+.+++.++..-..-..++.-+ |..........+...+|.+...|.++
T Consensus 573 mRii~i~~~~i~p~~-~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD 651 (960)
T KOG1992|consen 573 MRIISILQSAIIPHA-PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED 651 (960)
T ss_pred HHHHHhCHHhhhhhh-hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3 3444433221111 12233333 3334555665544444443333 22222222233445666666677665
Q ss_pred ChHHHHHHHHHHHHHhCCccc-----HH---------HHhhCCCcHHHHHHHhc----CCCHHHH-----HHHHHHHHHh
Q 004073 609 DPMWTEKSLAVLLNLAASAAG-----KE---------EMNSTPGLVSGLATVLD----TGELIEQ-----EQAVSCLFLL 665 (775)
Q Consensus 609 ~~~i~e~al~~L~nLa~~~e~-----~~---------~i~~~~g~I~~Lv~lL~----~~s~~~~-----e~Av~~L~~L 665 (775)
-....-.++.+|+.|.....+ -. .+-+..|-||.+|.+|. .|+.... ...++++..|
T Consensus 652 I~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkL 731 (960)
T KOG1992|consen 652 IQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKL 731 (960)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHH
Confidence 555666777777777665444 11 22334588999998876 4544333 2345555555
Q ss_pred h
Q 004073 666 C 666 (775)
Q Consensus 666 c 666 (775)
.
T Consensus 732 i 732 (960)
T KOG1992|consen 732 I 732 (960)
T ss_pred h
Confidence 4
No 420
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=20.92 E-value=86 Score=34.19 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCCccccccccccccCceecCCCCccchHHHHHHHh-cCCCCCCCCCCCC
Q 004073 267 RPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLS-DGHSTCPKTQQKL 327 (775)
Q Consensus 267 ~p~~~~~~~~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~-~~~~~CP~t~~~l 327 (775)
.|+.-+++....--++-.|-||-+-.+=-.++||||..|..|--+--. -..+.||.|+..-
T Consensus 46 EPnlttsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 46 EPNLTTSSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred CCccccccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 354333333333356789999999988888999999999999766321 1356899998654
No 421
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.88 E-value=3.9e+02 Score=33.27 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcH---HHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHH
Q 004073 567 TEHQCKLDALHALYNLSTIP-SNIPNLLSAGII---SGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSG 642 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V---~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~ 642 (775)
.++++++.|+.+|.|+...+ +++...+.+=+- ..=..+=........+..++-.++-+.. ..+|..
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~----------ndGIki 743 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG----------NDGIKI 743 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc----------CccHHH
Q ss_pred HHHHhc-----CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCH
Q 004073 643 LATVLD-----TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI 682 (775)
Q Consensus 643 Lv~lL~-----~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i 682 (775)
|+++|. +.-+.++.-|+.+|..|++.+ ..++.+-..-.+
T Consensus 744 Ll~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~-tVrQIltKLpLv 787 (1516)
T KOG1832|consen 744 LLKLLQYKNPPTTADCIRALACRVLLGLARDD-TVRQILTKLPLV 787 (1516)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHhccccCc-HHHHHHHhCccc
No 422
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.66 E-value=43 Score=26.33 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCC
Q 004073 318 STCPKTQQKLPH 329 (775)
Q Consensus 318 ~~CP~t~~~l~~ 329 (775)
..||+|+.+|+.
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 389999887653
No 423
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=20.58 E-value=49 Score=33.95 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=13.4
Q ss_pred CccccccccccccCce
Q 004073 281 EELRCPISLQLMYDPV 296 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV 296 (775)
--|.||+|+.+|..|+
T Consensus 259 ~GfvCsVCLsvfc~p~ 274 (296)
T COG5242 259 LGFVCSVCLSVFCRPV 274 (296)
T ss_pred EeeehhhhheeecCCc
Confidence 3599999999998874
No 424
>PRK12495 hypothetical protein; Provisional
Probab=20.01 E-value=1.4e+02 Score=30.83 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 004073 180 TERRALKKLI 189 (775)
Q Consensus 180 ~E~~~l~k~~ 189 (775)
.|++.|++..
T Consensus 8 aEREkLREKy 17 (226)
T PRK12495 8 AEREKLREKY 17 (226)
T ss_pred HHHHHHHHHH
Confidence 4676666643
Done!