Query 004074
Match_columns 775
No_of_seqs 464 out of 2686
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.4E-30 4.9E-35 285.7 20.6 269 442-713 47-338 (354)
2 3nmz_A APC variant protein; pr 100.0 1.4E-29 4.8E-34 286.1 20.2 266 443-711 164-452 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 3.3E-29 1.1E-33 284.6 21.2 278 427-711 3-362 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 3E-28 1E-32 281.4 23.7 280 426-712 48-387 (584)
5 1xm9_A Plakophilin 1; armadill 100.0 3.5E-27 1.2E-31 267.9 25.0 280 426-714 44-454 (457)
6 3ul1_B Importin subunit alpha- 99.9 2E-26 6.7E-31 265.3 27.1 278 427-710 101-388 (510)
7 3tpo_A Importin subunit alpha- 99.9 4E-26 1.4E-30 263.8 29.1 279 426-710 119-407 (529)
8 3now_A UNC-45 protein, SD10334 99.9 2.3E-26 7.9E-31 273.9 24.9 279 426-710 421-738 (810)
9 3nmz_A APC variant protein; pr 99.9 9.7E-27 3.3E-31 262.9 19.8 280 428-709 72-408 (458)
10 3ul1_B Importin subunit alpha- 99.9 5.6E-26 1.9E-30 261.5 24.7 280 427-710 58-346 (510)
11 3l6x_A Catenin delta-1; cateni 99.9 1.1E-25 3.7E-30 260.1 25.0 277 426-710 90-477 (584)
12 3nmw_A APC variant protein; AR 99.9 2.1E-26 7E-31 252.6 16.7 226 440-671 97-338 (354)
13 3tpo_A Importin subunit alpha- 99.9 9.4E-25 3.2E-29 252.3 26.8 281 426-710 76-365 (529)
14 3now_A UNC-45 protein, SD10334 99.9 3.6E-25 1.2E-29 263.7 22.5 281 427-715 496-788 (810)
15 4hxt_A De novo protein OR329; 99.9 1.4E-24 4.8E-29 223.6 23.2 242 469-716 2-248 (252)
16 4b8j_A Importin subunit alpha- 99.9 7.4E-24 2.5E-28 244.0 31.5 279 426-710 117-401 (528)
17 4b8j_A Importin subunit alpha- 99.9 3.6E-24 1.2E-28 246.5 28.1 280 425-709 73-358 (528)
18 4db8_A Armadillo-repeat protei 99.9 1.8E-24 6.2E-29 224.0 18.2 235 426-667 12-251 (252)
19 4hxt_A De novo protein OR329; 99.9 1.3E-23 4.3E-28 216.4 22.5 236 427-669 3-243 (252)
20 4db8_A Armadillo-repeat protei 99.9 5E-24 1.7E-28 220.7 19.2 236 468-709 11-251 (252)
21 1wa5_B Importin alpha subunit; 99.9 8.2E-23 2.8E-27 235.6 30.2 278 427-710 131-413 (530)
22 2jdq_A Importin alpha-1 subuni 99.9 2.2E-22 7.5E-27 225.4 32.3 277 427-710 65-348 (450)
23 1wa5_B Importin alpha subunit; 99.9 6.6E-23 2.3E-27 236.4 27.9 278 426-709 87-370 (530)
24 1jdh_A Beta-catenin; beta-cate 99.9 5.8E-23 2E-27 235.3 24.2 277 426-710 59-340 (529)
25 2z6h_A Catenin beta-1, beta-ca 99.9 1.1E-22 3.6E-27 240.6 25.0 276 426-709 56-336 (644)
26 3tt9_A Plakophilin-2; cell adh 99.9 1.9E-23 6.6E-28 215.1 12.7 194 469-668 8-230 (233)
27 2jdq_A Importin alpha-1 subuni 99.9 1.8E-21 6.1E-26 218.0 26.8 275 428-709 22-305 (450)
28 3tt9_A Plakophilin-2; cell adh 99.9 8.6E-23 2.9E-27 210.2 12.0 195 426-626 8-230 (233)
29 1jdh_A Beta-catenin; beta-cate 99.9 1.4E-21 4.7E-26 223.8 23.3 276 426-710 101-386 (529)
30 2z6g_A B-catenin; FULL-length, 99.9 4.3E-21 1.5E-25 231.7 26.2 276 426-709 192-472 (780)
31 2z6h_A Catenin beta-1, beta-ca 99.9 9.6E-21 3.3E-25 223.9 24.0 276 426-710 98-383 (644)
32 3opb_A SWI5-dependent HO expre 99.9 8.3E-21 2.8E-25 222.5 22.9 249 461-714 449-733 (778)
33 4db6_A Armadillo repeat protei 99.8 1.9E-20 6.6E-25 188.4 18.0 194 427-626 13-210 (210)
34 4db6_A Armadillo repeat protei 99.8 2.9E-20 9.9E-25 187.1 18.1 195 513-709 10-209 (210)
35 2z6g_A B-catenin; FULL-length, 99.8 6E-20 2.1E-24 221.7 22.9 275 426-709 234-518 (780)
36 1wgm_A Ubiquitin conjugation f 99.8 6.4E-21 2.2E-25 169.7 9.6 77 275-352 15-92 (98)
37 2kr4_A Ubiquitin conjugation f 99.8 3.5E-21 1.2E-25 167.1 6.5 75 275-350 7-81 (85)
38 2kre_A Ubiquitin conjugation f 99.8 7.2E-21 2.5E-25 170.0 7.3 74 276-350 23-96 (100)
39 2f42_A STIP1 homology and U-bo 99.8 2.6E-20 8.8E-25 182.5 7.7 76 277-352 101-176 (179)
40 1t1h_A Gspef-atpub14, armadill 99.8 3.7E-19 1.3E-23 151.7 6.6 76 277-352 3-78 (78)
41 1xqr_A HSPBP1 protein; armadil 99.8 7.7E-18 2.6E-22 180.0 17.9 236 426-667 28-287 (296)
42 3opb_A SWI5-dependent HO expre 99.8 9.2E-18 3.1E-22 196.8 19.0 276 426-708 334-682 (778)
43 1xqr_A HSPBP1 protein; armadil 99.7 2.1E-17 7.2E-22 176.6 15.0 179 530-710 57-239 (296)
44 2c2l_A CHIP, carboxy terminus 99.7 1.8E-18 6.1E-23 183.2 6.5 77 276-352 202-278 (281)
45 2yu4_A E3 SUMO-protein ligase 99.7 4.4E-18 1.5E-22 150.5 4.3 72 279-350 4-84 (94)
46 3m62_A Ubiquitin conjugation f 99.6 4.9E-16 1.7E-20 183.9 6.6 74 276-350 885-959 (968)
47 2bay_A PRE-mRNA splicing facto 99.6 2.2E-16 7.6E-21 127.6 2.1 55 282-337 3-58 (61)
48 3ztg_A E3 ubiquitin-protein li 99.6 6.2E-15 2.1E-19 129.5 9.1 75 277-351 8-85 (92)
49 3htk_C E3 SUMO-protein ligase 99.5 1.5E-14 5.3E-19 147.9 10.3 71 278-348 177-251 (267)
50 3fl2_A E3 ubiquitin-protein li 99.4 1E-13 3.6E-18 128.7 6.3 69 279-347 49-118 (124)
51 1z6u_A NP95-like ring finger p 99.4 1.7E-13 5.9E-18 131.5 5.1 69 279-347 75-144 (150)
52 3grl_A General vesicular trans 99.4 1E-11 3.4E-16 142.5 19.6 275 425-707 20-340 (651)
53 2y43_A E3 ubiquitin-protein li 99.3 1.1E-12 3.9E-17 116.7 5.3 70 279-349 19-89 (99)
54 2egp_A Tripartite motif-contai 99.3 1.5E-13 5.2E-18 116.9 -0.8 66 277-342 7-78 (79)
55 2ecw_A Tripartite motif-contai 99.3 9.6E-13 3.3E-17 113.2 3.1 66 277-342 14-84 (85)
56 2ckl_A Polycomb group ring fin 99.3 2.1E-12 7.3E-17 116.8 4.7 67 279-346 12-83 (108)
57 3l11_A E3 ubiquitin-protein li 99.3 1.3E-12 4.4E-17 119.6 3.1 70 278-347 11-87 (115)
58 2ecv_A Tripartite motif-contai 99.2 1.7E-12 5.7E-17 111.7 2.9 66 277-342 14-84 (85)
59 3lrq_A E3 ubiquitin-protein li 99.2 2.7E-12 9.3E-17 114.5 4.3 71 279-349 19-90 (100)
60 1jm7_B BARD1, BRCA1-associated 99.2 2.9E-12 9.9E-17 117.7 4.2 68 279-349 19-87 (117)
61 3hct_A TNF receptor-associated 99.2 3.4E-12 1.2E-16 117.4 4.7 69 277-345 13-81 (118)
62 2csy_A Zinc finger protein 183 99.2 3.1E-12 1E-16 109.5 4.1 63 278-342 11-73 (81)
63 2yur_A Retinoblastoma-binding 99.2 9.6E-12 3.3E-16 104.6 6.9 60 276-335 9-71 (74)
64 2ckl_B Ubiquitin ligase protei 99.2 3.3E-12 1.1E-16 124.6 3.8 70 278-347 50-121 (165)
65 2ecy_A TNF receptor-associated 99.2 1.3E-11 4.6E-16 101.2 6.9 56 277-332 10-65 (66)
66 2djb_A Polycomb group ring fin 99.2 2.5E-11 8.7E-16 101.3 7.0 59 276-335 9-68 (72)
67 1jm7_A BRCA1, breast cancer ty 99.2 1.1E-11 3.6E-16 112.7 4.4 70 279-348 18-89 (112)
68 3grl_A General vesicular trans 99.2 2.2E-09 7.4E-14 123.3 23.0 278 426-708 60-393 (651)
69 2ysl_A Tripartite motif-contai 99.1 6.2E-11 2.1E-15 99.0 7.5 56 277-332 15-72 (73)
70 4ayc_A E3 ubiquitin-protein li 99.1 1.6E-11 5.5E-16 116.1 4.4 64 280-346 51-114 (138)
71 3ltm_A Alpha-REP4; protein eng 99.1 3.6E-09 1.2E-13 106.0 19.2 190 467-714 17-208 (211)
72 1g25_A CDK-activating kinase a 99.1 5.8E-11 2E-15 97.0 4.6 55 281-335 2-61 (65)
73 3hcs_A TNF receptor-associated 99.1 4.7E-11 1.6E-15 117.0 3.8 68 278-345 14-81 (170)
74 1rmd_A RAG1; V(D)J recombinati 99.1 6.4E-11 2.2E-15 108.4 4.2 66 279-344 20-86 (116)
75 2ysj_A Tripartite motif-contai 99.1 2.1E-10 7.1E-15 93.0 6.7 47 277-323 15-63 (63)
76 3knv_A TNF receptor-associated 99.1 2E-11 6.8E-16 115.8 0.4 66 278-343 27-101 (141)
77 1oyz_A Hypothetical protein YI 99.0 8.3E-09 2.8E-13 108.1 19.7 224 426-708 23-249 (280)
78 3ltm_A Alpha-REP4; protein eng 99.0 1.1E-08 3.7E-13 102.5 19.4 185 426-669 19-205 (211)
79 3ltj_A Alpharep-4; protein eng 99.0 1.2E-08 4.1E-13 101.4 19.1 185 467-709 12-198 (201)
80 3ltj_A Alpharep-4; protein eng 99.0 2.3E-08 7.7E-13 99.4 20.1 182 426-666 14-197 (201)
81 3ng2_A RNF4, snurf, ring finge 99.0 1.4E-10 4.6E-15 96.3 3.2 57 279-336 7-70 (71)
82 2ecj_A Tripartite motif-contai 99.0 5.2E-10 1.8E-14 88.8 6.0 46 278-323 11-58 (58)
83 2d8t_A Dactylidin, ring finger 99.0 3E-10 1E-14 94.5 4.5 50 279-329 12-61 (71)
84 2ct2_A Tripartite motif protei 98.9 1E-09 3.6E-14 94.9 6.8 54 277-330 10-69 (88)
85 2ea6_A Ring finger protein 4; 98.9 8.1E-10 2.8E-14 90.9 4.8 52 277-329 10-68 (69)
86 2xeu_A Ring finger protein 4; 98.9 3.9E-10 1.3E-14 91.4 1.8 55 281-336 2-63 (64)
87 2ect_A Ring finger protein 126 98.9 2.1E-09 7.2E-14 90.9 6.0 57 278-335 11-70 (78)
88 1e4u_A Transcriptional repress 98.8 3E-09 1E-13 90.1 6.3 55 278-332 7-65 (78)
89 1oyz_A Hypothetical protein YI 98.8 7.3E-08 2.5E-12 100.9 18.0 199 465-708 19-220 (280)
90 2ecn_A Ring finger protein 141 98.7 6.4E-09 2.2E-13 86.0 2.2 52 278-331 11-62 (70)
91 4ap4_A E3 ubiquitin ligase RNF 98.7 7.7E-09 2.6E-13 96.3 2.9 55 280-335 5-66 (133)
92 4fdd_A Transportin-1; heat rep 98.7 4.9E-08 1.7E-12 118.6 10.8 275 426-711 174-473 (852)
93 2ep4_A Ring finger protein 24; 98.6 2.9E-08 9.8E-13 83.0 6.0 52 277-329 10-64 (74)
94 4gmo_A Putative uncharacterize 98.6 9.5E-08 3.2E-12 113.5 12.9 190 516-708 35-257 (684)
95 4fdd_A Transportin-1; heat rep 98.6 1.5E-07 5.2E-12 114.2 14.8 271 426-711 128-431 (852)
96 1chc_A Equine herpes virus-1 r 98.6 1.7E-08 5.6E-13 82.9 4.1 48 281-329 4-52 (68)
97 2ecm_A Ring finger and CHY zin 98.6 1.7E-08 5.9E-13 79.1 4.0 47 281-328 4-54 (55)
98 1bor_A Transcription factor PM 98.6 8.1E-09 2.8E-13 81.6 1.6 46 280-329 4-49 (56)
99 2kiz_A E3 ubiquitin-protein li 98.6 7.3E-08 2.5E-12 79.3 6.3 50 279-329 11-63 (69)
100 1iym_A EL5; ring-H2 finger, ub 98.6 4.3E-08 1.5E-12 76.8 4.2 48 280-328 3-54 (55)
101 2l0b_A E3 ubiquitin-protein li 98.5 3.7E-08 1.3E-12 86.0 4.2 50 279-329 37-89 (91)
102 4gmo_A Putative uncharacterize 98.5 1.8E-07 6E-12 111.2 10.9 155 554-710 34-215 (684)
103 1v87_A Deltex protein 2; ring- 98.5 6.8E-08 2.3E-12 87.8 5.3 50 280-329 23-94 (114)
104 1x4j_A Ring finger protein 38; 98.5 4.4E-08 1.5E-12 82.1 3.5 49 280-329 21-72 (75)
105 2vgl_B AP-2 complex subunit be 98.5 3.1E-06 1.1E-10 98.6 20.0 262 428-709 123-419 (591)
106 1b3u_A Protein (protein phosph 98.5 1.1E-06 3.7E-11 101.0 15.7 257 431-709 329-587 (588)
107 1b3u_A Protein (protein phosph 98.5 1.9E-06 6.6E-11 98.9 17.7 264 427-709 164-431 (588)
108 1ibr_B P95, importin beta-1 su 98.5 1.5E-06 5.1E-11 96.6 16.0 276 426-713 128-441 (462)
109 4ic3_A E3 ubiquitin-protein li 98.4 4.2E-08 1.4E-12 82.2 1.5 45 280-329 22-67 (74)
110 2y1n_A E3 ubiquitin-protein li 98.4 1.2E-07 4.2E-12 103.1 4.2 49 282-330 332-380 (389)
111 2vgl_B AP-2 complex subunit be 98.4 4E-06 1.4E-10 97.7 16.5 253 427-709 14-268 (591)
112 4ap4_A E3 ubiquitin ligase RNF 98.3 7.2E-08 2.5E-12 89.6 0.9 56 280-336 70-132 (133)
113 2ecg_A Baculoviral IAP repeat- 98.3 3.2E-07 1.1E-11 77.0 3.1 45 280-329 23-68 (75)
114 1wim_A KIAA0161 protein; ring 98.2 2.2E-07 7.6E-12 81.4 0.8 66 281-347 4-83 (94)
115 2ecl_A Ring-box protein 2; RNF 98.2 1E-06 3.5E-11 75.0 4.0 48 281-329 14-76 (81)
116 1w63_A Adapter-related protein 98.1 0.00012 4.2E-09 85.7 21.6 248 428-709 144-414 (618)
117 2vje_A E3 ubiquitin-protein li 98.1 1.8E-06 6.1E-11 70.1 3.5 48 280-328 6-56 (64)
118 1qgr_A Protein (importin beta 98.1 3.3E-05 1.1E-09 93.2 16.1 273 428-710 174-480 (876)
119 1qgr_A Protein (importin beta 98.0 0.00025 8.6E-09 85.4 22.3 275 426-712 128-440 (876)
120 2vje_B MDM4 protein; proto-onc 98.0 2.7E-06 9.1E-11 68.8 3.2 47 281-328 6-55 (63)
121 2bpt_A Importin beta-1 subunit 98.0 2.1E-05 7.2E-10 94.7 11.5 268 432-710 375-669 (861)
122 1w63_A Adapter-related protein 98.0 0.00026 8.8E-09 82.9 20.2 257 426-710 70-380 (618)
123 3dpl_R Ring-box protein 1; ubi 97.9 5.5E-06 1.9E-10 74.2 4.3 47 281-328 36-100 (106)
124 2ea5_A Cell growth regulator w 97.9 1.3E-05 4.5E-10 65.7 6.2 46 279-329 12-58 (68)
125 2yho_A E3 ubiquitin-protein li 97.9 2E-06 6.8E-11 72.9 1.2 45 280-329 16-61 (79)
126 1u6g_C TIP120 protein, CAND1; 97.9 1.8E-05 6.2E-10 99.9 10.5 270 426-712 6-287 (1230)
127 3t6p_A Baculoviral IAP repeat- 97.9 1.8E-06 6.3E-11 93.3 1.2 46 279-329 292-338 (345)
128 3b2a_A TON_1937, putative unch 97.9 0.00024 8.2E-09 71.5 16.1 215 428-660 35-254 (265)
129 1ibr_B P95, importin beta-1 su 97.9 8.2E-05 2.8E-09 82.4 14.3 232 428-668 174-438 (462)
130 2bpt_A Importin beta-1 subunit 97.9 0.00016 5.6E-09 86.9 17.8 267 432-712 230-532 (861)
131 2qk2_A LP04448P; mini spindles 97.9 8.2E-05 2.8E-09 76.0 12.2 180 430-625 19-205 (242)
132 3dad_A FH1/FH2 domain-containi 97.8 0.00013 4.4E-09 77.6 13.4 152 557-709 121-286 (339)
133 2d8s_A Cellular modulator of i 97.8 2.9E-05 9.8E-10 65.8 6.5 56 279-334 12-76 (80)
134 2qk2_A LP04448P; mini spindles 97.7 0.0002 7E-09 73.0 12.1 183 519-712 19-208 (242)
135 3b2a_A TON_1937, putative unch 97.7 0.00061 2.1E-08 68.6 14.7 218 469-709 33-261 (265)
136 2vgl_A Adaptor protein complex 97.6 0.0046 1.6E-07 72.3 24.0 249 430-708 150-432 (621)
137 2qk1_A Protein STU2; STU2P, XM 97.6 0.00034 1.2E-08 72.2 11.9 190 430-625 20-220 (249)
138 4a0k_B E3 ubiquitin-protein li 97.5 1.5E-05 5.1E-10 72.5 0.0 46 282-328 48-111 (117)
139 1te4_A Conserved protein MTH18 97.5 3.4E-05 1.2E-09 71.2 2.4 118 514-664 11-130 (131)
140 1te4_A Conserved protein MTH18 97.4 1.5E-05 5E-10 73.7 -1.1 119 553-705 11-129 (131)
141 1u6g_C TIP120 protein, CAND1; 97.3 0.0025 8.7E-08 80.2 17.3 267 426-710 133-464 (1230)
142 2qk1_A Protein STU2; STU2P, XM 97.2 0.0019 6.5E-08 66.6 11.5 186 522-713 23-224 (249)
143 2vgl_A Adaptor protein complex 97.1 0.01 3.5E-07 69.3 18.3 258 427-709 75-398 (621)
144 3dad_A FH1/FH2 domain-containi 96.7 0.022 7.4E-07 60.6 14.9 175 426-607 118-316 (339)
145 2iw3_A Elongation factor 3A; a 96.7 0.045 1.5E-06 66.6 19.7 248 445-713 70-328 (986)
146 4ady_A RPN2, 26S proteasome re 96.7 0.12 4E-06 62.5 22.5 222 441-710 451-677 (963)
147 3oc3_A Helicase MOT1, MOT1; re 96.6 0.014 4.8E-07 65.5 12.8 248 421-705 170-432 (800)
148 2ct0_A Non-SMC element 1 homol 96.6 0.0049 1.7E-07 51.1 7.0 48 281-328 14-63 (74)
149 2db0_A 253AA long hypothetical 96.5 0.19 6.4E-06 48.8 18.0 211 468-708 31-245 (253)
150 2db0_A 253AA long hypothetical 96.4 0.52 1.8E-05 45.8 20.5 211 426-666 32-245 (253)
151 1ho8_A Vacuolar ATP synthase s 96.4 0.031 1.1E-06 62.2 13.8 222 486-709 181-476 (480)
152 1vyx_A ORF K3, K3RING; zinc-bi 96.3 0.0039 1.3E-07 49.5 4.5 48 281-328 5-58 (60)
153 3tjz_B Coatomer subunit gamma; 96.1 0.019 6.3E-07 62.2 10.2 208 426-665 138-351 (355)
154 1ho8_A Vacuolar ATP synthase s 96.1 0.039 1.3E-06 61.5 12.9 233 430-666 171-475 (480)
155 3tjz_B Coatomer subunit gamma; 96.0 0.035 1.2E-06 60.0 11.9 246 428-713 70-320 (355)
156 4ffb_C Protein STU2; tubulin f 96.0 0.071 2.4E-06 55.3 13.7 183 431-625 14-212 (278)
157 4ady_A RPN2, 26S proteasome re 95.6 0.54 1.8E-05 56.8 20.5 224 440-708 408-640 (963)
158 2iw3_A Elongation factor 3A; a 95.2 0.92 3.1E-05 55.2 21.2 217 430-666 99-323 (986)
159 3k1l_B Fancl; UBC, ring, RWD, 95.0 0.004 1.4E-07 65.9 0.0 49 281-329 307-373 (381)
160 3vk6_A E3 ubiquitin-protein li 94.7 0.021 7.2E-07 49.5 3.7 46 284-329 3-49 (101)
161 3i2d_A E3 SUMO-protein ligase 94.4 0.024 8E-07 61.0 4.0 62 282-343 249-314 (371)
162 2fv2_A RCD1 required for cell 93.2 1.7 5.9E-05 44.3 14.8 231 426-665 3-266 (268)
163 4fo9_A E3 SUMO-protein ligase 93.1 0.065 2.2E-06 57.4 4.6 64 281-344 214-281 (360)
164 1wa5_C Importin alpha RE-expor 92.7 1 3.4E-05 55.0 15.2 255 441-711 375-672 (960)
165 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.059 2E-06 47.1 3.0 34 281-314 2-38 (101)
166 4ffb_C Protein STU2; tubulin f 91.9 0.8 2.7E-05 47.2 11.0 151 554-712 55-215 (278)
167 3ebb_A Phospholipase A2-activa 91.4 0.81 2.8E-05 48.3 10.4 147 558-707 151-304 (304)
168 3ebb_A Phospholipase A2-activa 90.7 1.4 4.8E-05 46.4 11.5 174 440-615 115-296 (304)
169 2fv2_A RCD1 required for cell 90.4 2.3 7.8E-05 43.4 12.0 172 531-707 74-266 (268)
170 1upk_A MO25 protein; transfera 90.3 9.6 0.00033 40.4 17.2 197 465-666 74-282 (341)
171 2of3_A ZYG-9; multifunctional 89.7 2.7 9.2E-05 43.3 12.3 179 430-625 50-236 (266)
172 3eg5_B Protein diaphanous homo 89.6 1.8 6.1E-05 47.2 11.5 102 609-710 133-247 (383)
173 2f31_A Diaphanous protein homo 88.7 10 0.00034 38.1 15.7 181 430-611 4-214 (233)
174 1wa5_C Importin alpha RE-expor 87.2 20 0.00068 43.5 19.9 218 440-666 418-669 (960)
175 3eg5_B Protein diaphanous homo 85.9 20 0.00067 38.9 16.9 182 428-611 68-280 (383)
176 3oc3_A Helicase MOT1, MOT1; re 85.8 1.6 5.5E-05 49.3 8.1 163 427-621 264-432 (800)
177 3nw0_A Non-structural maintena 85.7 0.74 2.5E-05 46.8 5.1 48 283-330 181-230 (238)
178 2f31_A Diaphanous protein homo 84.4 3.8 0.00013 41.2 9.7 116 595-710 42-181 (233)
179 2of3_A ZYG-9; multifunctional 84.2 7.3 0.00025 40.1 11.8 101 554-667 132-236 (266)
180 2bnx_A Diaphanous protein homo 83.8 29 0.001 37.5 17.2 182 430-612 8-219 (386)
181 2x19_B Importin-13; nuclear tr 83.0 41 0.0014 40.5 19.9 156 439-605 461-621 (963)
182 1lrv_A LRV, leucine-rich repea 81.8 2.6 9E-05 42.8 7.3 43 641-702 197-239 (244)
183 2x1g_F Cadmus; transport prote 79.6 13 0.00044 45.1 13.8 215 440-667 477-722 (971)
184 2bnx_A Diaphanous protein homo 78.2 9.3 0.00032 41.5 10.7 116 595-710 46-185 (386)
185 3u0r_A Apoptosis inhibitor 5; 72.8 14 0.00048 41.0 10.1 119 565-704 39-158 (507)
186 3u0r_A Apoptosis inhibitor 5; 69.5 9.6 0.00033 42.3 7.9 97 553-664 64-160 (507)
187 1upk_A MO25 protein; transfera 69.5 36 0.0012 36.0 12.0 197 427-629 79-287 (341)
188 2x1g_F Cadmus; transport prote 64.3 78 0.0027 38.1 15.6 168 530-709 481-663 (971)
189 1weo_A Cellulose synthase, cat 63.4 14 0.00046 31.2 5.7 47 282-328 16-69 (93)
190 3c2g_A SYS-1 protein; beta-cat 63.2 46 0.0016 35.4 11.0 107 496-605 265-376 (619)
191 4hat_C Exportin-1; heat repeat 60.9 20 0.00068 44.0 9.4 100 567-668 465-570 (1023)
192 4hat_C Exportin-1; heat repeat 60.8 25 0.00085 43.2 10.2 154 469-627 447-620 (1023)
193 2kkx_A Uncharacterized protein 59.5 7.6 0.00026 33.4 3.7 53 279-332 24-82 (102)
194 1x5b_A Signal transducing adap 58.7 29 0.00098 32.8 8.1 73 425-501 51-124 (163)
195 3m1i_C Exportin-1; heat repeat 56.1 2.4E+02 0.008 34.3 18.0 219 426-668 16-264 (1049)
196 2x19_B Importin-13; nuclear tr 55.7 27 0.00091 42.1 9.3 96 564-668 459-557 (963)
197 3ibv_A Exportin-T; karyopherin 55.6 3.5E+02 0.012 32.8 19.9 224 426-668 6-261 (980)
198 1lrv_A LRV, leucine-rich repea 52.6 9.3 0.00032 38.7 3.8 141 473-704 78-218 (244)
199 3mjh_B Early endosome antigen 51.5 3.5 0.00012 28.5 0.2 15 282-296 5-19 (34)
200 1juq_A ADP-ribosylation factor 51.5 34 0.0011 32.6 7.3 77 425-502 49-128 (171)
201 3ldz_A STAM-1, signal transduc 50.8 44 0.0015 30.6 7.8 72 425-501 41-113 (140)
202 2jvx_A NF-kappa-B essential mo 50.7 4.4 0.00015 26.7 0.6 16 280-295 1-16 (28)
203 1mhq_A ADP-ribosylation factor 50.2 44 0.0015 31.0 7.7 77 425-502 37-116 (148)
204 3zyq_A Hepatocyte growth facto 48.8 46 0.0016 33.0 8.2 73 425-501 44-117 (226)
205 1lsh_A Lipovitellin (LV-1N, LV 48.8 95 0.0033 38.1 12.7 135 516-670 357-510 (1056)
206 1vdy_A Hypothetical protein (R 48.1 53 0.0018 30.2 7.8 75 639-713 50-134 (140)
207 3ldz_A STAM-1, signal transduc 45.5 39 0.0013 30.9 6.5 73 638-710 42-115 (140)
208 1x5b_A Signal transducing adap 44.1 43 0.0015 31.5 6.7 73 638-710 52-126 (163)
209 3c2g_A SYS-1 protein; beta-cat 44.0 1.7E+02 0.0057 31.2 11.5 110 579-690 266-377 (619)
210 1dvp_A HRS, hepatocyte growth 41.5 68 0.0023 31.5 8.1 73 425-501 41-114 (220)
211 1mhq_A ADP-ribosylation factor 40.1 49 0.0017 30.6 6.3 73 638-710 38-117 (148)
212 3g2s_A C-terminal fragment of 39.9 88 0.003 28.9 8.0 77 425-502 47-126 (149)
213 3gae_A Protein DOA1; UFD3, CDC 39.8 28 0.00095 35.3 5.0 128 443-584 70-217 (253)
214 3pwf_A Rubrerythrin; non heme 39.5 18 0.00063 34.4 3.3 29 279-327 135-163 (170)
215 1juq_A ADP-ribosylation factor 37.4 47 0.0016 31.6 5.8 74 638-711 50-130 (171)
216 3m1i_C Exportin-1; heat repeat 36.6 88 0.003 38.2 9.7 99 568-668 466-570 (1049)
217 3qml_C Protein SLS1, nucleotid 35.4 2.2E+02 0.0076 29.6 10.8 149 555-709 23-189 (315)
218 3g2s_A C-terminal fragment of 35.3 89 0.0031 28.9 7.3 73 638-710 48-127 (149)
219 3l9t_A Putative uncharacterize 32.7 3.9E+02 0.013 26.7 13.0 138 426-586 70-209 (240)
220 2jne_A Hypothetical protein YF 32.4 13 0.00044 31.9 0.8 40 283-328 33-72 (101)
221 6rxn_A Rubredoxin; electron tr 31.9 14 0.00048 27.3 0.8 13 278-290 26-38 (46)
222 3pst_A Protein DOA1; protein d 29.6 68 0.0023 35.1 6.2 128 443-584 242-389 (425)
223 1elk_A Target of MYB1; superhe 29.5 1.4E+02 0.0049 27.6 7.8 76 425-501 52-129 (157)
224 3l9t_A Putative uncharacterize 28.9 3.3E+02 0.011 27.2 10.6 114 554-679 103-219 (240)
225 3a6p_A Exportin-5; exportin-5, 28.7 4.3E+02 0.015 32.7 14.2 221 427-669 12-278 (1204)
226 2xqn_T Testin, TESS; metal-bin 27.7 30 0.001 30.6 2.5 47 280-329 28-75 (126)
227 1e8j_A Rubredoxin; iron-sulfur 27.1 21 0.00072 27.0 1.1 13 278-290 32-44 (52)
228 4rxn_A Rubredoxin; electron tr 26.6 19 0.00066 27.5 0.8 13 278-290 32-44 (54)
229 3l3f_X Protein DOA1, DOA1/UFD3 26.4 63 0.0021 34.6 5.1 128 443-584 179-326 (362)
230 1m3v_A FLIN4, fusion of the LI 25.3 38 0.0013 29.9 2.7 52 280-332 30-84 (122)
231 3gjx_A Exportin-1; transport, 25.3 9.9E+02 0.034 29.1 16.2 218 426-667 28-275 (1073)
232 3ibv_A Exportin-T; karyopherin 25.2 6.8E+02 0.023 30.2 14.7 215 440-667 456-730 (980)
233 3zyq_A Hepatocyte growth facto 24.9 1.1E+02 0.0036 30.4 6.2 73 638-710 45-119 (226)
234 1lsh_A Lipovitellin (LV-1N, LV 24.4 5.3E+02 0.018 31.5 13.6 130 431-587 445-579 (1056)
235 1yk4_A Rubredoxin, RD; electro 23.4 24 0.00082 26.7 0.8 13 278-290 31-43 (52)
236 2kn9_A Rubredoxin; metalloprot 23.3 26 0.00089 29.1 1.1 14 278-291 56-69 (81)
237 2v3b_B Rubredoxin 2, rubredoxi 22.6 25 0.00085 27.0 0.8 13 278-290 32-44 (55)
238 2cs3_A Protein C14ORF4, MY039 22.5 1.2E+02 0.0042 25.0 4.8 42 281-322 14-63 (93)
239 1dx8_A Rubredoxin; electron tr 20.9 28 0.00097 28.0 0.8 14 278-291 36-49 (70)
240 2xjy_A Rhombotin-2; oncoprotei 20.4 59 0.002 28.8 3.0 49 280-329 27-78 (131)
241 2ee8_A Protein ODD-skipped-rel 20.0 1.2E+02 0.0041 24.9 4.9 16 280-295 15-30 (106)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.4e-30 Score=285.69 Aligned_cols=269 Identities=19% Similarity=0.181 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhc-------cCCCHHHHHHHHHHHHHhhccCCchhHHHHh-
Q 004074 442 GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAVNNNRNKELMLA- 513 (775)
Q Consensus 442 ~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~-------~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~- 513 (775)
+.+..|++.|.+++.+ +++|..|++.|++++|+.+|.... +..++.+|+.|+++|.||+.+++.+|..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4566899999999987 799999999999999999996421 1124679999999999999766668887764
Q ss_pred hCcHHHHHHHhccCCh--HHHHHHHHhccccc--CCccccccccCchHHHHHhh-cCCCCHHHHHHHHHHHHHhcC-CCC
Q 004074 514 AGVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLST-IPS 587 (775)
Q Consensus 514 ~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~--~~~k~~I~~~g~i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~-~~~ 587 (775)
.|+||.|+.+|++++. ++.|+++|.||+.. +++|..|.+.|+||+||++| +++ +..+++.|+.+|+||+. +++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChh
Confidence 5679999999998875 58899999999985 46899999999999999975 566 89999999999999998 568
Q ss_pred ChHHHH-HcCcHHHHHHhccCCCh----HHHHHHHHHHHHHhC----CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHH
Q 004074 588 NIPNLL-SAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658 (775)
Q Consensus 588 nk~~iv-~aG~V~~Lv~LL~~~~~----~i~e~al~~L~nLa~----~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~A 658 (775)
|+..++ .+|+|+.|+.+|.+++. .+++.|+++|.||+. +++++..+.+. |+|+.|+.+|.+++..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHTTCSCHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc-CCHHHHHHHHcCCChHHHHHH
Confidence 999998 69999999999986543 588999999999995 78888888874 999999999999999999999
Q ss_pred HHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004074 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 659 v~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
+++|++|+.+++++++.+.+.|+++.|+.|+.++++++++.|...|++|....+.
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999988889999999999999999999999999999999999999976444
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=286.11 Aligned_cols=266 Identities=20% Similarity=0.186 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhc-------cCCCHHHHHHHHHHHHHhhccCCchhHHHHh-h
Q 004074 443 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAVNNNRNKELMLA-A 514 (775)
Q Consensus 443 ~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~-------~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-~ 514 (775)
.+++|++.|.+++.+ +++|..|.+.|++++|+.+|.... +..++.+|++|+++|.||+.+++.+|..+.. .
T Consensus 164 ~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 164 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp TTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence 355899999999765 899999999999999999996421 1134678999999999999766667777754 5
Q ss_pred CcHHHHHHHhccCCh--HHHHHHHHhccccc--CCccccccccCchHHHHHhh-cCCCCHHHHHHHHHHHHHhcC-CCCC
Q 004074 515 GVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLST-IPSN 588 (775)
Q Consensus 515 G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~--~~~k~~I~~~g~i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~-~~~n 588 (775)
|+||.|+.+|.+++. ++.|+++|.||+.. +++|..|.+.|+||+||++| .++ +..+++.|+.+|+||+. +++|
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHH
Confidence 679999999998875 58899999999985 46889999999999999975 556 89999999999999998 7789
Q ss_pred hHHHH-HcCcHHHHHHhccCCCh----HHHHHHHHHHHHHhC----CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004074 589 IPNLL-SAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 589 k~~iv-~aG~V~~Lv~LL~~~~~----~i~e~al~~L~nLa~----~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
+..++ .+|+|+.|+.+|..++. .+++.|+++|.||+. +++++..+.+. |+|+.|+.+|.+++..++++|+
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc-ccHHHHHHHHcCCChHHHHHHH
Confidence 99998 69999999999976543 488999999999995 78888888875 9999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004074 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
++|++|+.++++++..+.+.|+++.|+.|+.+++.++++.|...|++|....
T Consensus 401 ~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999888899999999999999999999999999999999999998764
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=3.3e-29 Score=284.64 Aligned_cols=278 Identities=20% Similarity=0.183 Sum_probs=237.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.++.++..|.++ +.++|..|+..|++++.+++.++..+++.|+||.||++|++ .++.+|+.|+++|.||+.++++
T Consensus 3 ~l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHH
Confidence 467889999998 89999999999999999888899999999999999999998 7899999999999999986689
Q ss_pred hhHHHHhhCcHHHHHHHhc-cCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhc--------CC-------CC
Q 004074 507 NKELMLAAGVIPLLEKMIS-NSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK--------GK-------TE 568 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~-s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~--------~~-------~~ 568 (775)
+|..|++.|++|+|+.+|. +++. ++.|+++|.||+..+++|..|.+ |++|+|+++|. ++ .+
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 9999999999999999998 6664 58899999999999999999998 99999999993 22 14
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHc-CcHHHHHHhccC------CChHHHHHHHHHHHHHhCC---------------
Q 004074 569 HQCKLDALHALYNLSTIPSNIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAAS--------------- 626 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~nk~~iv~a-G~V~~Lv~LL~~------~~~~i~e~al~~L~nLa~~--------------- 626 (775)
..+.++|+++|+|||.+++++..++++ |++++|+.+|.+ .+..+++.|+.+|.||+..
T Consensus 157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 566779999999999988899999998 999999999974 3456789999999999731
Q ss_pred ------------------------------------cccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC
Q 004074 627 ------------------------------------AAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 627 ------------------------------------~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~ 669 (775)
+.+.+.+.. .|+++.|+.+|.. .++.++|.|+++|++||.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 112223333 4778999999985 57999999999999999865
Q ss_pred hHh----HH-HHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004074 670 EKC----CQ-MVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 670 ~~~----~~-~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
... .+ .+.++|++|.|+.|+.+++.++++.|+++|++|....
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 322 13 3446899999999999999999999999999998743
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=3e-28 Score=281.40 Aligned_cols=280 Identities=18% Similarity=0.162 Sum_probs=237.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc-C
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-N 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~ 504 (775)
..+..||..|.++ +.++|..|+..|++++..++++|..|++.|+||+||++|.+ .+..+|+.|+++|.||+.+ +
T Consensus 48 ~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s----~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 48 PELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH----PKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC----SSHHHHHHHHHHHHHHTSSSC
T ss_pred ccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC----CCHHHHHHHHHHHHHHHccCC
Confidence 4688999999998 89999999999999999999999999999999999999998 7999999999999999874 5
Q ss_pred CchhHHHHhhCcHHHHHHHhccC-Ch--HHHHHHHHhcccccCCccccccccCchHHHHHhhc-----------------
Q 004074 505 NRNKELMLAAGVIPLLEKMISNS-NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----------------- 564 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~-~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~----------------- 564 (775)
++||..|++.|+||+|+.+|.++ +. ++.|+++|++||.++++|..|.. +++|+||++|.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence 78999999999999999999974 33 58899999999999999999984 67999999872
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH-cCcHHHHHHhccC------CChHHHHHHHHHHHHHhCCcc--------
Q 004074 565 GKTEHQCKLDALHALYNLSTIPS-NIPNLLS-AGIISGLQSLAVP------GDPMWTEKSLAVLLNLAASAA-------- 628 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~~~~-nk~~iv~-aG~V~~Lv~LL~~------~~~~i~e~al~~L~nLa~~~e-------- 628 (775)
+..+..+++.|+++|+||+.+.+ +|..+++ .|+|+.||.+|.+ .+...++.|+++|.||+..-+
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 11157899999999999998775 5888988 4677899998863 456788999999999987521
Q ss_pred ------------------cHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCh----HhHHHHHHCCCHHHH
Q 004074 629 ------------------GKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNE----KCCQMVLQEGVIPAL 685 (775)
Q Consensus 629 ------------------~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~----~~~~~v~~~G~i~~L 685 (775)
|...+.. .++|+.|+.+|. ..++.++|+|+++|++||.++. ..+..+.++|+++.|
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp --------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 1111121 245778899996 5689999999999999998652 233455567899999
Q ss_pred HHhhhcCChHHHHHHHHHHHHhHhccC
Q 004074 686 VSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 686 v~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
+.|+.+++.++++.|..+|++|.....
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999997643
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=3.5e-27 Score=267.94 Aligned_cols=280 Identities=14% Similarity=0.138 Sum_probs=241.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhc-hhccCCCHHHHHHHHHHHHHhhccC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE-SAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..|+..|.++ +.++|..|+++|++++.+++++|..|++.|+||.|+++|. + .+..+++.|+++|.||+.+
T Consensus 44 g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~- 117 (457)
T 1xm9_A 44 GGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSST- 117 (457)
T ss_dssp THHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS-
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcC-
Confidence 4678889899888 9999999999999999998999999999999999999998 5 6899999999999999974
Q ss_pred CchhHHHHhhCcHHHHHHHhc--------cCCh--H--------HHHHHHHhcccccCCcccccccc-CchHHHHHhhcC
Q 004074 505 NRNKELMLAAGVIPLLEKMIS--------NSNS--H--------GAATALYLNLSFLDDAKPIIGSS-HAVPFLVELCKG 565 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~--------s~~~--~--------~~AaaaL~~Ls~~~~~k~~I~~~-g~i~~LV~LL~~ 565 (775)
+.+|..+++ |++|.|+.+|. ++.. + .+|+++|.||+..++++..+.+. |++++|+.+|.+
T Consensus 118 ~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 118 DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 789999999 99999999993 2211 1 38999999999988888888886 999999988863
Q ss_pred C-------------------------------------------------------------------------------
Q 004074 566 K------------------------------------------------------------------------------- 566 (775)
Q Consensus 566 ~------------------------------------------------------------------------------- 566 (775)
+
T Consensus 197 ~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (457)
T 1xm9_A 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276 (457)
T ss_dssp HHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred hccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence 0
Q ss_pred -------------------CCHHHHHHHHHHHHHhcCCCCCh-----HHHH-HcCcHHHHHHhccCCChHHHHHHHHHHH
Q 004074 567 -------------------TEHQCKLDALHALYNLSTIPSNI-----PNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 567 -------------------~~~~~k~~Al~aL~nLs~~~~nk-----~~iv-~aG~V~~Lv~LL~~~~~~i~e~al~~L~ 621 (775)
.++..++.|+++|.||+...... ..++ ++|++|.|+++|.+++..++..|+++|.
T Consensus 277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 13567778999999999866542 2344 5899999999999999999999999999
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcCCC------HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC-Ch
Q 004074 622 NLAASAAGKEEMNSTPGLVSGLATVLDTGE------LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-ST 694 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s------~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g-~~ 694 (775)
||+.+++.+..|.. |+|+.|+++|..++ +++...++++|.++...++++...+.+.|++++|+.|+.++ ++
T Consensus 357 nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 357 NMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 99999888877764 78999999999763 46888999999999988888999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhHhccCCC
Q 004074 695 RGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 695 ~~k~kA~~LL~~L~~~~~~~ 714 (775)
+++++|..+|.++..+.+-+
T Consensus 435 ~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 435 KAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHHHHcchhhh
Confidence 99999999999998765543
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=2e-26 Score=265.35 Aligned_cols=278 Identities=16% Similarity=0.204 Sum_probs=247.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.++.||..|...++.++|..|+++|.+++..+++++..+++.|+||.|+.+|.+ .+..+++.|+++|.||+.+++.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s----~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHH
Confidence 567788888766478999999999999999999999999999999999999998 7999999999999999976677
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHH
Q 004074 507 NKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
++..+++.|++++|+.+|.+.+. ...++++|.+++........+.. .|++|.|+++|.++ +.+++..|+++
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~a 255 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 89999999999999999987653 35689999999987766655543 68999999999998 99999999999
Q ss_pred HHHhcCCCCCh-HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc-HHHHhhCCCcHHHHHHHhcCCCHHHHH
Q 004074 579 LYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGLATVLDTGELIEQE 656 (775)
Q Consensus 579 L~nLs~~~~nk-~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~-~~~i~~~~g~I~~Lv~lL~~~s~~~~e 656 (775)
|.+|+.+..++ ..+++.|+++.|+++|.+.+..++..++.+|.||+...+. +..+.. .|+++.|+.+|.+.++.+++
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~ 334 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQK 334 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHH
Confidence 99999877655 4556799999999999999999999999999999876554 445555 59999999999999999999
Q ss_pred HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
.|+++|.+|+.++......+.+.|+++.|+.++.+++..+|+.|++.|.++...
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 999999999999989999999999999999999999999999999999988754
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=4e-26 Score=263.82 Aligned_cols=279 Identities=16% Similarity=0.197 Sum_probs=249.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..||..|...++.++|..|+++|.+++..+.+++..+++.|+||.|+.+|.+ .+..+++.|+++|.||+.+++
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s----~~~~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGAGS 194 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhccCH
Confidence 3577888888766578999999999999999999999999999999999999998 899999999999999997677
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHH
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALH 577 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~ 577 (775)
.++..+++.|++++|+.+|..... ...++++|.+++.+......+.. .|++|.|+.+|.++ +++++.+|++
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~ 273 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCW 273 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHH
Confidence 889999999999999999987553 35689999999988766555543 78999999999999 9999999999
Q ss_pred HHHHhcCCCCCh-HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHH
Q 004074 578 ALYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQ 655 (775)
Q Consensus 578 aL~nLs~~~~nk-~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~ 655 (775)
+|.+|+.+..++ ..++++|+++.|+.+|.+.+..++..++.+|.||+...+ .+..+.. .|+++.|+.+|.++++.++
T Consensus 274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~ 352 (529)
T 3tpo_A 274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQ 352 (529)
T ss_dssp HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHH
T ss_pred HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHH
Confidence 999999877654 456679999999999999999999999999999987654 4555665 5999999999999999999
Q ss_pred HHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 656 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 656 e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+.|+++|.+|+.++......+.+.|+++.|+.++.+++..++..|++.|.++...
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999989999999999999999999999999999999999988754
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=2.3e-26 Score=273.94 Aligned_cols=279 Identities=15% Similarity=0.163 Sum_probs=246.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-----------------------------hhh---HHhhccCchHH
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-----------------------------EAR---VFTGANGFVVA 473 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~-----------------------------~nr---~~i~~~G~I~~ 473 (775)
..++.|+..|.++ +..++..|++.|.+++.+.+ .++ ..++++|+||.
T Consensus 421 g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 421 ASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred chHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 4577888889887 88999999999999998542 233 57889999999
Q ss_pred HHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcccccc
Q 004074 474 LLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIG 551 (775)
Q Consensus 474 Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~ 551 (775)
|+.+|++ .++.+|++|+++|.|++. +++++..++++|++|+|+.+|.+++. ++.|+++|.+|+...+....+.
T Consensus 500 LV~LL~s----~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 500 LCALAKT----ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred HHHHHcC----CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 9999998 789999999999999985 67899999999999999999999876 6889999999987655444332
Q ss_pred c---cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc
Q 004074 552 S---SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 552 ~---~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~ 627 (775)
. .|++|+|+.+|.++.+...+..|++||.||+..+ +++..++++|+++.|+.+|.+++..++..|+++|.||+.++
T Consensus 575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 1 4799999999987635556679999999999875 68999999999999999999989999999999999999999
Q ss_pred ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHH-CCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004074 628 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ-EGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 628 e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~-~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
+.+..+....|+++.|+.++.+.+..+|+.|+++|.+|+.+++..++.+++ +|+++.|+.|+.+++.++|+.|.+.|.+
T Consensus 655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999888864599999999999999999999999999999977788888888 8999999999999999999999999999
Q ss_pred hHhc
Q 004074 707 FREQ 710 (775)
Q Consensus 707 L~~~ 710 (775)
+...
T Consensus 735 L~~~ 738 (810)
T 3now_A 735 MINA 738 (810)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8763
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=9.7e-27 Score=262.91 Aligned_cols=280 Identities=15% Similarity=0.109 Sum_probs=237.4
Q ss_pred HHHHHHHHhcCC-----------CHHHHHHHHHHHHHHhccChhhhHHhhccCch----------HHHHHHhchhccCCC
Q 004074 428 YQDFLNVLNEGE-----------NLGQKCNIVEQIRLLLKDDEEARVFTGANGFV----------VALLRFLESAVCERN 486 (775)
Q Consensus 428 i~~Ll~~L~s~~-----------~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I----------~~Lv~lL~s~~~~~d 486 (775)
++.||+.|.... +.+.|.+|+++|.+++...++......+.|++ +.++++|.+.....+
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMD 151 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSC
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Confidence 556677776531 37999999999999999988888888888888 777777876421111
Q ss_pred ----------HHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccC--------C-----hHHHHHHHHhccccc
Q 004074 487 ----------SYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS--------N-----SHGAATALYLNLSFL 543 (775)
Q Consensus 487 ----------~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~--------~-----~~~~AaaaL~~Ls~~ 543 (775)
...+.+|+++|.|++. +++||..|++.|++++|+.+|... + .+.+|+++|.||+..
T Consensus 152 ~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~ 230 (458)
T 3nmz_A 152 QDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG 230 (458)
T ss_dssp CCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC
Confidence 1123489999999975 688999999999999999999521 1 157899999999987
Q ss_pred CC-ccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC--CCChHHHHHcCcHHHHHHh-ccCCChHHHHHHHH
Q 004074 544 DD-AKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQSL-AVPGDPMWTEKSLA 618 (775)
Q Consensus 544 ~~-~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~--~~nk~~iv~aG~V~~Lv~L-L~~~~~~i~e~al~ 618 (775)
++ +|..|.. .|+||+||.+|.++ ++++++.|+++|.||+.. ++||..++++|+|++|+++ +.+++..+++.|+.
T Consensus 231 ~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~ 309 (458)
T 3nmz_A 231 DVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 309 (458)
T ss_dssp CHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred CcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 65 7777754 56799999999998 999999999999999975 4689999999999999996 56678889999999
Q ss_pred HHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCH----HHHHHHHHHHHHhhc---CChHhHHHHHHCCCHHHHHHhhh
Q 004074 619 VLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGEL----IEQEQAVSCLFLLCN---GNEKCCQMVLQEGVIPALVSISV 690 (775)
Q Consensus 619 ~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~----~~~e~Av~~L~~Lc~---~~~~~~~~v~~~G~i~~Lv~Ll~ 690 (775)
+|+||+. +++++..|....|+|+.|+.+|.++++ .++++|+++|.+|+. .++++++.+.+.|+++.|+.++.
T Consensus 310 aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~ 389 (458)
T 3nmz_A 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389 (458)
T ss_dssp HHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS
T ss_pred HHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc
Confidence 9999999 778899998557999999999997655 489999999999997 67789999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhHh
Q 004074 691 NGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 691 ~g~~~~k~kA~~LL~~L~~ 709 (775)
+++..+++.|+++|.+|..
T Consensus 390 ~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHc
Confidence 9999999999999999984
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=5.6e-26 Score=261.52 Aligned_cols=280 Identities=19% Similarity=0.185 Sum_probs=246.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.+..+|..|.++ +.+.|.+|+..+|.+... .......+++.|+||.||++|++. +++.+|..|+++|.|++.+++
T Consensus 58 ~i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 58 SVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCH
Confidence 478899999999 999999999999987643 333456788999999999999762 578999999999999998888
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCC----CCHHHHHHHHHH
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK----TEHQCKLDALHA 578 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~----~~~~~k~~Al~a 578 (775)
+++..++++|++|.|+.+|.+++. ++.|+++|.||+.+ ++++..+...|++++|+.+|... .....+..++++
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 899999999999999999999876 58899999999986 46788888899999999999865 134678899999
Q ss_pred HHHhcCCCCChHHHH-HcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHH
Q 004074 579 LYNLSTIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 579 L~nLs~~~~nk~~iv-~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~ 657 (775)
|.|++.+..+...+. ..|+++.|+.+|.+.+..++..|+++|.+|+.....+..++...|+++.|+.+|.++++.++..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 999998876655544 4789999999999999999999999999999987776666555799999999999999999999
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
|+.+|.+|+..++..+..+++.|+++.|+.++.++++.+++.|+++|.++...
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999988999999999999999999999999999999999998753
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=1.1e-25 Score=260.09 Aligned_cols=277 Identities=16% Similarity=0.112 Sum_probs=227.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..||..|.++ +.++|..|+++|++|+.. +++||..|++.|+||+||++|.+. .+..+|++|+++|.||+. +
T Consensus 90 G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~---~~~~~~e~aa~aL~nLS~-~ 164 (584)
T 3l6x_A 90 KGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA---RDMDLTEVITGTLWNLSS-H 164 (584)
T ss_dssp THHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC---CSHHHHHHHHHHHHHHTT-S
T ss_pred CCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC-C
Confidence 4678899999998 999999999999999985 799999999999999999999873 478899999999999986 6
Q ss_pred CchhHHHHhhCcHHHHHHHhc---cC---------------Ch--HHHHHHHHhcccccCC-ccccccc-cCchHHHHHh
Q 004074 505 NRNKELMLAAGVIPLLEKMIS---NS---------------NS--HGAATALYLNLSFLDD-AKPIIGS-SHAVPFLVEL 562 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~---s~---------------~~--~~~AaaaL~~Ls~~~~-~k~~I~~-~g~i~~LV~L 562 (775)
+.+|..|++ |++|+|+.+|. ++ +. .++|+++|.||+...+ +|..|.+ .|++++||.+
T Consensus 165 ~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~ 243 (584)
T 3l6x_A 165 DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243 (584)
T ss_dssp GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence 788998885 56999999872 11 11 4678888888887653 3665555 3445566655
Q ss_pred hc-------------------------------------------------------------------------CCCCH
Q 004074 563 CK-------------------------------------------------------------------------GKTEH 569 (775)
Q Consensus 563 L~-------------------------------------------------------------------------~~~~~ 569 (775)
|+ ...++
T Consensus 244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~ 323 (584)
T 3l6x_A 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323 (584)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH
Confidence 53 21245
Q ss_pred HHHHHHHHHHHHhcCCCC-----ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004074 570 QCKLDALHALYNLSTIPS-----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~~-----nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
.++++|++||.|||.+.. ++..+.+.|+++.|++||.+++..+++.|+++|.||+.+...+..| . .|+|+.||
T Consensus 324 ~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV 401 (584)
T 3l6x_A 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLV 401 (584)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHH
Confidence 666777777777765432 2333345799999999999999999999999999999999998877 4 38999999
Q ss_pred HHhcCC--------CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHHHHhHhc
Q 004074 645 TVLDTG--------ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 645 ~lL~~~--------s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL~~L~~~ 710 (775)
.+|..+ +..+...|+++|.+|+..++++.+.+.+.|+|+.|+.|+.++ .+++++.|..+|.++..+
T Consensus 402 ~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 999876 578899999999999999999999999999999999999987 899999999999998643
No 12
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=2.1e-26 Score=252.65 Aligned_cols=226 Identities=18% Similarity=0.117 Sum_probs=201.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc-CCchhHHHHhhCcH
Q 004074 440 NLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRNKELMLAAGVI 517 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~nk~~i~~~G~i 517 (775)
+.+.|..|++.|++++.+++++|..+.. .|+||.|+++|.+ .+..+|+.|+++|.||+.. ++++|..+++.|+|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~I 172 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 172 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC----CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCH
Confidence 4678999999999999998889998865 6779999999998 7999999999999999874 45789999999999
Q ss_pred HHHHHHh-ccCCh--HHHHHHHHhcccc-cCCcccccc-ccCchHHHHHhhcCCCCH----HHHHHHHHHHHHhcC----
Q 004074 518 PLLEKMI-SNSNS--HGAATALYLNLSF-LDDAKPIIG-SSHAVPFLVELCKGKTEH----QCKLDALHALYNLST---- 584 (775)
Q Consensus 518 ~~Lv~lL-~s~~~--~~~AaaaL~~Ls~-~~~~k~~I~-~~g~i~~LV~LL~~~~~~----~~k~~Al~aL~nLs~---- 584 (775)
|.|+.+| ++++. ++.|+++|.||+. .+++|..|. ..|+||+|+++|.++ +. .+++.|+++|+||+.
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~ 251 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIAT 251 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccC
Confidence 9999985 55553 5789999999998 668888888 689999999999977 43 589999999999995
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004074 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
+++++..++++|+|+.|+.+|.+++..+++.|+++|.||+. +++.+..+.+. |+|+.|+++|.++++.+++.|+++|.
T Consensus 252 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM-GAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT-THHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999994 67888888874 99999999999999999999999999
Q ss_pred HhhcCChH
Q 004074 664 LLCNGNEK 671 (775)
Q Consensus 664 ~Lc~~~~~ 671 (775)
+|+.+++.
T Consensus 331 nL~~~~~~ 338 (354)
T 3nmw_A 331 NLMANRPA 338 (354)
T ss_dssp HHHTTCCG
T ss_pred HHHcCCHH
Confidence 99987654
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=9.4e-25 Score=252.34 Aligned_cols=281 Identities=19% Similarity=0.182 Sum_probs=248.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..++..+.++ +.+.|..|+..+|.+... .......+++.|+||.||++|... .++.+|..|+++|.|++.++
T Consensus 76 ~~l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~ 151 (529)
T 3tpo_A 76 WSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGT 151 (529)
T ss_dssp CCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCC
Confidence 4578899999998 999999999999987643 333466788999999999999752 57899999999999999877
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCC----CCHHHHHHHHH
Q 004074 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK----TEHQCKLDALH 577 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~----~~~~~k~~Al~ 577 (775)
+.++..+++.|++|.|+.+|.+++. ++.|+++|.||+.+ ++++..+...|++++|+.+|... .....+..+++
T Consensus 152 ~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 152 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 7888999999999999999999886 58899999999976 57888999999999999999865 13467889999
Q ss_pred HHHHhcCCCCChHHHH-HcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHH
Q 004074 578 ALYNLSTIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQE 656 (775)
Q Consensus 578 aL~nLs~~~~nk~~iv-~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e 656 (775)
+|.|++.+..+...+. ..|++|.|+.+|.+++..++..|+++|.+|+.....+..++...|+++.|+.+|.+.++.++.
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 9999998876555444 478999999999999999999999999999998777666655569999999999999999999
Q ss_pred HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
.|+.+|.+|+.+++.....+++.|+++.|+.++.++++.+++.|+++|.++...
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999988999999999999999999999999999999999998754
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=3.6e-25 Score=263.72 Aligned_cols=281 Identities=14% Similarity=0.094 Sum_probs=245.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++ +..+|.+|++.|.+++. +.++|..+++.|+||+|+.+|.+ .+..+|+.|+++|.||+.+.+.
T Consensus 496 aVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 496 ITTALCALAKTE-SHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHHHHHHHTCC-CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCCh
Confidence 466778888888 99999999999999996 57799999999999999999988 6889999999999999864332
Q ss_pred hhHHH---HhhCcHHHHHHHhccCCh---HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004074 507 NKELM---LAAGVIPLLEKMISNSNS---HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 507 nk~~i---~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
...+ ...|++|+|+.+|.++.. ...|+++|.||+.. ++++..|.+.|+++.|+.+|.++ ++.+++.|+++|
T Consensus 570 -~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L 647 (810)
T 3now_A 570 -EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL 647 (810)
T ss_dssp -HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred -hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 2211 124699999999987643 35699999999987 46788888899999999999998 899999999999
Q ss_pred HHhcCCCCChHHHHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHH
Q 004074 580 YNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~ 657 (775)
.||+.+++++..+++ .|+++.|+.|+.+.+..+++.|+++|+||+. ++.....++...|+|+.|+.+|.+++..++..
T Consensus 648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~ 727 (810)
T 3now_A 648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHR 727 (810)
T ss_dssp HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHH
T ss_pred HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHH
Confidence 999999999999986 7999999999999999999999999999998 67777888875699999999999999999999
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC---ChHHHHHHHHHHHHhHhccCCCC
Q 004074 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG---STRGRDKAQRLLMLFREQRQRDH 715 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g---~~~~k~kA~~LL~~L~~~~~~~~ 715 (775)
|+++|.||+..+.+....+.+.|++++|+.|+... +.++.+.|...|..+-++..-+.
T Consensus 728 A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 728 GIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 99999999988888999999999999999998644 78999999999999987765443
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.4e-24 Score=223.58 Aligned_cols=242 Identities=21% Similarity=0.253 Sum_probs=221.0
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CC
Q 004074 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DD 545 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~ 545 (775)
|.|+.|+.+|.+ .++.++..|+++|.+++..+++++..+++.|+++.|+.+|.+++. +..|+++|.+|+.. ++
T Consensus 2 ~~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 679999999998 789999999999999987666689999999999999999998875 57899999999987 77
Q ss_pred ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc-CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004074 546 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS-TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 546 ~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs-~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
++..+.+.|+++.|+.+|+++ ++.++..|+++|.||+ ..++++..+++.|+++.|+++|.+++..++..++++|.||+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888898899999999999998 9999999999999999 56678999999999999999999999999999999999999
Q ss_pred CCcccH-HHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHH
Q 004074 625 ASAAGK-EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 703 (775)
Q Consensus 625 ~~~e~~-~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~L 703 (775)
...+.. ..+.. .|+++.|+.+|.++++.+++.|+.+|.+||..++.....+.+.|+++.|+.++.++++.+++.|..+
T Consensus 157 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 157 SGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 865554 55665 5999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHHhHhccCCCCC
Q 004074 704 LMLFREQRQRDHP 716 (775)
Q Consensus 704 L~~L~~~~~~~~~ 716 (775)
|.+|........+
T Consensus 236 L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 236 LENIKSGGWLEHH 248 (252)
T ss_dssp HHHHHHTCBCCC-
T ss_pred HHHHHcCCCcccc
Confidence 9999988766544
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=7.4e-24 Score=243.95 Aligned_cols=279 Identities=18% Similarity=0.166 Sum_probs=247.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++++..+|..|++.|.+++.++++++..+++.|+|+.|+.+|.+ .+..+++.|+++|.|++..++
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCCh
Confidence 3567788888877339999999999999999999999999999999999999998 789999999999999987667
Q ss_pred chhHHHHhhCcHHHHHHHhc-cCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMIS-NSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~-s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|+++.|+.+|. +.+. +..|+++|.+|+............|+++.|+.+|.++ ++.++..|+++|.+|
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYL 271 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 77889999999999999994 4443 5789999999998765555555589999999999998 999999999999999
Q ss_pred cCCCCCh-HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCC-CHHHHHHHH
Q 004074 583 STIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTG-ELIEQEQAV 659 (775)
Q Consensus 583 s~~~~nk-~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~-s~~~~e~Av 659 (775)
+....++ ..+++.|+++.|+.+|.+.+..++..|+++|.||+.... ....+.. .|+++.|+.+|.++ ++.++..|+
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~ 350 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEAC 350 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHH
Confidence 9876654 567789999999999999999999999999999998544 4455555 59999999999998 999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
++|.+|+.++......+.+.|+++.|+.++.++++.++..|..+|.++...
T Consensus 351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999998888888999999999999999999999999999999999866
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=3.6e-24 Score=246.54 Aligned_cols=280 Identities=16% Similarity=0.143 Sum_probs=248.2
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhhHHhhccCchHHHHHHhchhccCCC-HHHHHHHHHHHHHhhc
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERN-SYAQEIGAMALFNLAV 502 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~-~nr~~i~~~G~I~~Lv~lL~s~~~~~d-~~~qe~A~~aL~nLs~ 502 (775)
.+.+..++..|.++ +++.|..|+..|+.++.... .++..+++.|+||.|+.+|.+ .+ +.+|..|+++|.+++.
T Consensus 73 ~~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~----~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 73 LESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR----EDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp --CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC----TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC----CCCHHHHHHHHHHHHHHhC
Confidence 35688899999888 89999999999999987654 677888999999999999987 44 8999999999999997
Q ss_pred cCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004074 503 NNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 503 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
.+.+++..+++.|++|.|+.+|.+++. ++.|+++|.+|+.. +.++..+...|++++|+.+|....+..++..|+++|
T Consensus 148 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 148 GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 667889999999999999999998775 57899999999876 456778888899999999994433899999999999
Q ss_pred HHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004074 580 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
.||+....+....+..|+++.|+.+|.+.+..++..|+++|.+|+.....+...+...|+++.|+.+|.++++.+++.|+
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 99998876666677799999999999999999999999999999988776644433359999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC-ChHHHHHHHHHHHHhHh
Q 004074 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-STRGRDKAQRLLMLFRE 709 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g-~~~~k~kA~~LL~~L~~ 709 (775)
++|.+|+.++....+.+++.|+++.|+.++.++ ++.++..|.++|.++..
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999999998888899999999999999999999 99999999999999975
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=1.8e-24 Score=224.03 Aligned_cols=235 Identities=22% Similarity=0.257 Sum_probs=212.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..|.++ +.++|..|++.|+.++..+.+++..+.+.|+|+.|+.+|.+ .++.++..|+++|.|++.+++
T Consensus 12 ~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 12 SELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp CSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCH
Confidence 4578899999998 89999999999988777678889999999999999999998 679999999999999987678
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcc-ccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK-PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k-~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|++|.|+.+|++++. ++.|+++|.+|+..+.++ ..+...|+++.|+++|.++ +..++..|+++|.||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 899999999999999999999875 578999999999998888 7788899999999999998 999999999999999
Q ss_pred cCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004074 583 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 583 s~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
+... +++..+++.|+++.|+.+|.+++..+++.|+++|.||+.. ++.+..+.. .|+++.|+.++.++++.+++.|+.
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHH
Confidence 9755 5777888999999999999999999999999999999964 455666666 599999999999999999999999
Q ss_pred HHHHhhc
Q 004074 661 CLFLLCN 667 (775)
Q Consensus 661 ~L~~Lc~ 667 (775)
+|.+|++
T Consensus 245 ~L~~l~~ 251 (252)
T 4db8_A 245 ALEKLQS 251 (252)
T ss_dssp HHHTTC-
T ss_pred HHHHHhc
Confidence 9999985
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=1.3e-23 Score=216.43 Aligned_cols=236 Identities=21% Similarity=0.248 Sum_probs=213.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++ +.++|..|+..|++++..+++++..+.+.|+++.|+++|.+ .+..++..|+++|.+++.+++.
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChH
Confidence 467888899888 89999999999999999999999999999999999999998 7899999999999999876688
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccc-ccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004074 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls-~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
++..+++.|+++.|+.+|.+++. +..|+++|.+|+ ..++++..+.+.|+++.|+++|+++ ++.++..|+++|.||+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999998775 578999999999 5667888888899999999999998 9999999999999999
Q ss_pred CCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004074 584 TIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 584 ~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
... .++..+++.|+++.|+.+|.+++..++..|+++|.||+.. ++.+..+.. .|+++.|++++.++++.+++.|+.+
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 855 4567888999999999999999999999999999999984 445556666 5999999999999999999999999
Q ss_pred HHHhhcCC
Q 004074 662 LFLLCNGN 669 (775)
Q Consensus 662 L~~Lc~~~ 669 (775)
|.+|+...
T Consensus 236 L~~l~~~~ 243 (252)
T 4hxt_A 236 LENIKSGG 243 (252)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99999754
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=5e-24 Score=220.70 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=213.7
Q ss_pred cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc-cC
Q 004074 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF-LD 544 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~~ 544 (775)
....+.++..|.+ +|+.+|..|+++|.++...++.++..+++.|++|.|+.+|.+++. +..|+++|.+++. .+
T Consensus 11 ~~~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4568899999998 788999999999988655566778889999999999999998875 5779999999997 56
Q ss_pred CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 004074 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk-~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL 623 (775)
+++..+.+.|+++.|+.+|+++ ++.+++.|+++|.||+.+..++ ..+++.|+++.|+.+|.+++..++..|+++|.||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7888888899999999999998 9999999999999999999888 8899999999999999999999999999999999
Q ss_pred hCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHH
Q 004074 624 AASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702 (775)
Q Consensus 624 a~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~ 702 (775)
+.... .+..+.. .|+++.|+.+|.++++.+++.|+.+|.+|+..++.....+.+.|+++.|+.++.++++.+++.|..
T Consensus 166 ~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 166 ASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp TTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred HcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHH
Confidence 98654 4455555 599999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHhHh
Q 004074 703 LLMLFRE 709 (775)
Q Consensus 703 LL~~L~~ 709 (775)
+|.+|..
T Consensus 245 ~L~~l~~ 251 (252)
T 4db8_A 245 ALEKLQS 251 (252)
T ss_dssp HHHTTC-
T ss_pred HHHHHhc
Confidence 9998864
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=8.2e-23 Score=235.60 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=245.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++.++.+|..|++.|.+++..+++++..+++.|+++.|+.+|.+ .+..+++.|+++|.+++..++.
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCcc
Confidence 466777777764478999999999999999988999999999999999999998 7999999999999999875567
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004074 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
++..++..|+++.|+.+|.+.+. +..|+++|.+|+... .........|+++.|+.+|.++ ++.++..|+++|.+|+
T Consensus 207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 88888999999999999998664 577999999999875 4445555589999999999998 9999999999999999
Q ss_pred CCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004074 584 TIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 584 ~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
... +....+++.|+++.|+.+|.+.+..++..|+.+|.||+...+ ....+.. .|+++.|+.+|.++++.+++.|+++
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~a 364 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWT 364 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHH
Confidence 765 467778889999999999999899999999999999997644 4445555 5999999999999999999999999
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
|.+|+.+++...+.+++.|+++.|+.++.++++.++..|.++|.++...
T Consensus 365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999998888888899999999999999999999999999999999765
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=2.2e-22 Score=225.42 Aligned_cols=277 Identities=19% Similarity=0.163 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++.+.++|..|++.|.+++..+.+++..+.+.|+++.|+.+|.+ .++.+++.|+++|.+++..++.
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS----EFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCHH
Confidence 466777778766478999999999999999888888888899999999999998 7999999999999999876567
Q ss_pred hhHHHHhhCcHHHHHHHhcc-CCh--HHHHHHHHhcccccC--CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004074 507 NKELMLAAGVIPLLEKMISN-SNS--HGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~--~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
++..+++.|+++.|+.+|.+ .+. +..|+++|.+|+... ..+..+. .+++|.|+.+|.++ +..++..|+++|.+
T Consensus 141 ~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS-DTDVLADACWALSY 218 (450)
T ss_dssp HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 88888999999999999986 343 578999999999764 3333333 79999999999998 99999999999999
Q ss_pred hcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH-HHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004074 582 LSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 582 Ls~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~-~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
|+... +++..+++.|+++.|+.+|.+.+..++..|+++|.+|+...+... .+.. .|+++.|+.+|.+.++.++..|+
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~ 297 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEAC 297 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHHH
Confidence 99764 567778889999999999998899999999999999998766544 4454 59999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
++|.+|+.+++...+.+.+.|+++.|+.++.++++++|..|..+|.++...
T Consensus 298 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 298 WTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999998888888899999999999999999999999999999999754
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=6.6e-23 Score=236.42 Aligned_cols=278 Identities=16% Similarity=0.156 Sum_probs=247.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..++..|.++ ++++|..|+..|+.++... ..++..+++.|++|.|+.+|.+. .++.+|..|+++|.+++..+
T Consensus 87 ~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCC
Confidence 4578899999988 8999999999999997643 45567788899999999999872 28999999999999998766
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004074 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
+.++..+++.|++|.|+.+|.+++. ++.|+++|.+|+.. ++++..+...|++++|+.+|.+. +..++..|+++|.+
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 6788888899999999999998775 58899999999976 46777888889999999999997 99999999999999
Q ss_pred hcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004074 582 LSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 582 Ls~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
|+.+. .+....+..|+++.|+.+|.+++..++..++++|.+|+... +....+.. .|+++.|+.+|.+.++.+++.|+
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~ 320 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPAL 320 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHH
Confidence 99876 66667778999999999999999999999999999999864 44566666 49999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.+|.+|+.+++...+.+++.|+++.|+.++.+++..++..|.++|.++..
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999888888889999999999999999999999999999999975
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=5.8e-23 Score=235.25 Aligned_cols=277 Identities=21% Similarity=0.178 Sum_probs=244.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..|.++.+++++..|+..|++++.+ ++++..+++.|+||.|+++|.+ .++.+|..|+++|.|++..++
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 133 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCc
Confidence 45777888887654899999999999999876 5699999999999999999998 789999999999999987667
Q ss_pred chhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|++|.|+.+|.+++.. ..++.+|.+++.. ++++..+...|+++.|+++|+++.....+..++.+|.||
T Consensus 134 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 7788888999999999999987753 5566788899874 678888888999999999999875677888899999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004074 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+.+++++..+++.|+++.|+.++.+++..++..++++|.||+....... . ..++++.|+++|.+.++.+++.|+++|
T Consensus 214 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~-~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--H-HHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999998899999999999999998754332 1 137899999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHHHHhHhc
Q 004074 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL~~L~~~ 710 (775)
.+|+..+++.+..+.+.|+++.|+.++.+. .+.+++.|..+|.+|...
T Consensus 291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 999998888999999999999999888763 379999999999999653
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=240.58 Aligned_cols=276 Identities=21% Similarity=0.178 Sum_probs=244.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..|.++.+.++|..|+..|+.++.. .+++..+.+.|+|+.|+.+|.+ .++.+|..|+++|.|++..++
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~ 130 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE 130 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcc
Confidence 45777888888655789999999999999887 5699999999999999999998 789999999999999987666
Q ss_pred chhHHHHhhCcHHHHHHHhccCChHHH--HHHHHhcccc-cCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSF-LDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~--AaaaL~~Ls~-~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|++|.|+.+|.+++.+.. ++.+|.+|+. +++++..+.+.|+++.|+++|++......+..++.+|+||
T Consensus 131 ~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL 210 (644)
T 2z6h_A 131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210 (644)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 778888899999999999999876533 4558889986 6788889999999999999999875678889999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004074 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+.+++++..++++|+++.|+.++.+++..+++.++++|.||+....... .. .++++.|+.+|.+.++.+++.|+++|
T Consensus 211 s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~--~~-~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 211 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GM-EGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC--SC-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh--hh-hhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999998899999999999999997643321 11 37899999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhc-CC-hHHHHHHHHHHHHhHh
Q 004074 663 FLLCNGNEKCCQMVLQEGVIPALVSISVN-GS-TRGRDKAQRLLMLFRE 709 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~-~~~k~kA~~LL~~L~~ 709 (775)
.+|+..+++++..+.+.|+++.|+.++.+ ++ +.++..|..+|.+|..
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 99999888899999999999999988876 33 7999999999999964
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=215.11 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=172.8
Q ss_pred CchHHHHHHhchhccCCCH--HHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc-c
Q 004074 469 GFVVALLRFLESAVCERNS--YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF-L 543 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~--~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~ 543 (775)
-.||.||++|.+ +++ .+|..|+++|.+++..++.+|..+++.|+||+|+.+|++++. ++.|+++|.||+. +
T Consensus 8 ~~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 8 MTLERAVSMLEA----DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CCHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 468999999998 555 899999999999998788899999999999999999999876 6889999999998 5
Q ss_pred CCccccccccCchHHHHHhhc-CCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhcc----------------
Q 004074 544 DDAKPIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV---------------- 606 (775)
Q Consensus 544 ~~~k~~I~~~g~i~~LV~LL~-~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~---------------- 606 (775)
+++|..|.+.|+||+||++|+ ++ +.++++.|+.+|+||+..+.||..+++. +|++|++++.
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence 789999999999999999998 46 8999999999999999999999999974 7999999663
Q ss_pred CCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCC------CHHHHHHHHHHHHHhhcC
Q 004074 607 PGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTG------ELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 607 ~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~------s~~~~e~Av~~L~~Lc~~ 668 (775)
..+..+++.|.++|.||+. ++++|..|.+.+|+|+.||.+++.+ +.+.+|+|+.+|+|||.+
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1256889999999999988 5689999998889999999999852 568999999999999975
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=1.8e-21 Score=217.99 Aligned_cols=275 Identities=16% Similarity=0.165 Sum_probs=236.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc--cChhhhHHhhcc-CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004074 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLK--DDEEARVFTGAN-GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak--~~~~nr~~i~~~-G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+..++..|.++ +.++|..|+..|+.++. .++..+. +.+. |+++.|+++|.+. .++.+|..|+++|.+++..+
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~~~~~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDE-VISTPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHH-HHTSTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHH-HHHcCCcHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCC
Confidence 67788888888 89999999999999864 3444443 5555 9999999999872 38999999999999998766
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004074 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
.++...+++.|++|.|+.+|.+++. ++.|+++|.+++... +++..+...|+++.|+.+|.+..+..++..|+++|.|
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6777778899999999999998775 578999999999865 5677777789999999999963389999999999999
Q ss_pred hcCCC--CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHH
Q 004074 582 LSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658 (775)
Q Consensus 582 Ls~~~--~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~A 658 (775)
|+.+. ..+..++ .|+++.|+.++.+++..++..++++|.+|+... +.+..+.. .|+++.|+.+|.+.++.+++.|
T Consensus 177 l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a 254 (450)
T 2jdq_A 177 LCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPA 254 (450)
T ss_dssp HHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHH
T ss_pred HhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHH
Confidence 99764 3444444 899999999999999999999999999999865 44555555 5999999999999999999999
Q ss_pred HHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 659 v~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+.+|.+|+.+++...+.+.+.|+++.|+.++.++++.+|..|..+|.++..
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999887888888999999999999999999999999999999875
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=8.6e-23 Score=210.24 Aligned_cols=195 Identities=21% Similarity=0.187 Sum_probs=171.7
Q ss_pred hHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004074 426 ERYQDFLNVLNEGENL--GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~--~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
..++.++..|.++ +. ++|..|+..|++++..++++|..|++.|+||+||++|++ .+..+|+.|+++|.||+..
T Consensus 8 ~~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s----~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 8 MTLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CCHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhC
Confidence 5688899999988 66 889999999999999999999999999999999999998 7899999999999999976
Q ss_pred CCchhHHHHhhCcHHHHHHHhcc-CCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhc---CC-----------
Q 004074 504 NNRNKELMLAAGVIPLLEKMISN-SNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GK----------- 566 (775)
Q Consensus 504 ~~~nk~~i~~~G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~---~~----------- 566 (775)
+++||..|+++|+||+|+++|.+ ++. +++|+++|++||..+++|..|.+ +++|+|+.++. +|
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccc
Confidence 78899999999999999999984 453 68899999999999999999986 57999999773 11
Q ss_pred -CCHHHHHHHHHHHHHhcCCC-CChHHHHHc-CcHHHHHHhccC------CChHHHHHHHHHHHHHhCC
Q 004074 567 -TEHQCKLDALHALYNLSTIP-SNIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 567 -~~~~~k~~Al~aL~nLs~~~-~nk~~iv~a-G~V~~Lv~LL~~------~~~~i~e~al~~L~nLa~~ 626 (775)
.+..++.+|..+|+||++.+ ++|..|.+. |+|+.|+.++.. .+...+|.|+.+|.||+-.
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 26799999999999999854 899999985 778999999864 2457789999999999864
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=1.4e-21 Score=223.79 Aligned_cols=276 Identities=17% Similarity=0.108 Sum_probs=242.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +.++|..|++.|++++.+++.++..+.+.|++|.|+.+|.+ .+..++..++.+|.+++..++
T Consensus 101 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 101 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCH
Confidence 4677888888887 89999999999999999988889999999999999999988 788999999999999998778
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+++..+.+.|+++.|+.+|++++. ...++.+|.+|+..++++..+.+.|+++.|+.++.++ ++.++..|+++|.||
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 899999999999999999988764 3557888999999999999999899999999999998 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcC--CCHHHHHHHH
Q 004074 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDT--GELIEQEQAV 659 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~--~s~~~~e~Av 659 (775)
+....... ...|+++.|+++|.+.+..+++.|+++|.+|+... +++..+... |+++.|+++|.. .++.+++.|+
T Consensus 255 ~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~ 331 (529)
T 1jdh_A 255 SDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp HTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHH
Confidence 97654322 23589999999999999999999999999999864 577788774 999999999985 3489999999
Q ss_pred HHHHHhhcCChH---hHHHHHHCCCHHHHHHhhhcCC-hHHHHHHHHHHHHhHhc
Q 004074 660 SCLFLLCNGNEK---CCQMVLQEGVIPALVSISVNGS-TRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~~---~~~~v~~~G~i~~Lv~Ll~~g~-~~~k~kA~~LL~~L~~~ 710 (775)
.+|.+|+..++. .+..+.+.|+++.|+.++.++. ..+++.|.++|.++...
T Consensus 332 ~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 999999986433 4678899999999999999876 58999999999998753
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=4.3e-21 Score=231.72 Aligned_cols=276 Identities=21% Similarity=0.178 Sum_probs=241.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++.+.++|..|+..|++++.. .+++..+++.|+|+.|+.+|.+ .+..++..|+++|.||+...+
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGS----PVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCh
Confidence 45677788887655899999999999998876 6788899999999999999988 689999999999999998667
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc-cCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF-LDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|+++.|+.+|.+++. +..|+.+|.+++. +++++..+...|+++.|+.+|+++.....+..++.+|.+|
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 788888899999999999998765 4567778888886 4678888888899999999999885566778899999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004074 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+.+..++..++++|+++.|+.++.+.+..++..|+++|.+|+....... . ..++++.|+.+|.+.++.+++.|+++|
T Consensus 347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~--~-~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh--h-hhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999998899999999999999998654321 1 237899999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhc-CC-hHHHHHHHHHHHHhHh
Q 004074 663 FLLCNGNEKCCQMVLQEGVIPALVSISVN-GS-TRGRDKAQRLLMLFRE 709 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~-~~~k~kA~~LL~~L~~ 709 (775)
.+|+..+.+.+..+.+.|+++.|+.++.+ ++ +.+++.|..+|.+|..
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 99999988899999999999999988876 33 4899999999999964
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.86 E-value=9.6e-21 Score=223.86 Aligned_cols=276 Identities=17% Similarity=0.101 Sum_probs=240.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +..+|..|+..|++++..++.++..+.+.|+|+.|+.+|.+ .+..++..++.+|.+++..++
T Consensus 98 g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 98 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp THHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCc
Confidence 3567788888887 89999999999999999888888899999999999999998 678888888999999987678
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+++..+++.|+++.|+.+|+++.. ...++.+|.+|+..++++..+.+.|+++.|+.++.++ +..++..|+++|.||
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 899999999999999999998764 3668999999999999999999999999999999998 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcCC--CHHHHHHHH
Q 004074 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTG--ELIEQEQAV 659 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av 659 (775)
+...... ....|+++.|+.+|.+.+..+++.|+++|.+|+... +++..+.. .|+++.|+.+|... .+.+++.|+
T Consensus 252 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 252 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp GGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHH
Confidence 9755332 122489999999999999999999999999999864 56777777 49999999999863 389999999
Q ss_pred HHHHHhhcCCh---HhHHHHHHCCCHHHHHHhhhcCC-hHHHHHHHHHHHHhHhc
Q 004074 660 SCLFLLCNGNE---KCCQMVLQEGVIPALVSISVNGS-TRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~---~~~~~v~~~G~i~~Lv~Ll~~g~-~~~k~kA~~LL~~L~~~ 710 (775)
.+|.+|+..++ .....+.+.|+++.|+.++.+.+ ..+++.|.++|.+|...
T Consensus 329 ~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 99999997543 23455888999999999998875 69999999999998754
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.3e-21 Score=222.46 Aligned_cols=249 Identities=13% Similarity=0.157 Sum_probs=211.8
Q ss_pred hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh-----HHHHHH
Q 004074 461 ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS-----HGAATA 535 (775)
Q Consensus 461 nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-----~~~Aaa 535 (775)
+|..+.++|+||.|+.++++ .++.+|+.|+++|+||+. +.++|..+++.|++++|+.+|.++.. ++.|+.
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ 523 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHN----LSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCR 523 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHH
Confidence 67789999999999999998 799999999999999985 68899999999999999999988752 578999
Q ss_pred HHhcccccCCccccccc---cCchHHHHHhhcCCCC-------------HHHHHHHHHHHHHhcCCCCC-----hHHHHH
Q 004074 536 LYLNLSFLDDAKPIIGS---SHAVPFLVELCKGKTE-------------HQCKLDALHALYNLSTIPSN-----IPNLLS 594 (775)
Q Consensus 536 aL~~Ls~~~~~k~~I~~---~g~i~~LV~LL~~~~~-------------~~~k~~Al~aL~nLs~~~~n-----k~~iv~ 594 (775)
+|.+|....+....++. .|+|++|+.||..+.. ...+..|+.||.||++.++| +..+++
T Consensus 524 ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 524 ALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603 (778)
T ss_dssp HHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 99998876655544431 4999999999983201 12377999999999998854 788999
Q ss_pred c-CcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccH-HHHhhCC-----CcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004074 595 A-GIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK-EEMNSTP-----GLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 595 a-G~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~-~~i~~~~-----g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
. |+++.|..+|.+++..++..|+.+|.||+.+++++ ..+...+ +.++.||.++..++..+|..|+++|.+++.
T Consensus 604 ~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 5 99999999999889999999999999999999886 3554332 137899999999999999999999999988
Q ss_pred CChHhHHHHHHC-CCHHHHHHhhhc--CChHHHHHHHHHHHHhHhccCCC
Q 004074 668 GNEKCCQMVLQE-GVIPALVSISVN--GSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 668 ~~~~~~~~v~~~-G~i~~Lv~Ll~~--g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
.++..++.+++. ++++.|+.++.+ .++.++..+..++.+|.+....+
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~ 733 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDN 733 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCST
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccC
Confidence 777788888887 799999999998 89999999999999999865443
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=1.9e-20 Score=188.37 Aligned_cols=194 Identities=20% Similarity=0.224 Sum_probs=175.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.+. +.++|..|++.|.+++..+++++..+.+.|+|+.|+++|.+ .++.+++.|+++|.|++.+++.
T Consensus 13 ~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 13 ELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred hhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcH
Confidence 455667777777 99999999999999999999999999999999999999998 7899999999999999876778
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004074 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
++..+++.|++|.|+.+|++++. +..|+++|.+|+... +.+..+.+.|+++.|+++|+++ +..+++.|+++|.||+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999998875 578999999999654 4555677799999999999998 9999999999999999
Q ss_pred CC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC
Q 004074 584 TI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 584 ~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~ 626 (775)
.. ++++..+++.|+++.|+.++.+++..+++.|+++|.+|+++
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 87 66888899999999999999999999999999999999863
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.84 E-value=2.9e-20 Score=187.10 Aligned_cols=195 Identities=18% Similarity=0.228 Sum_probs=175.0
Q ss_pred hhCcHHHHHHHhccCCh--HHHHHHHHhcccc-cCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCC
Q 004074 513 AAGVIPLLEKMISNSNS--HGAATALYLNLSF-LDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSN 588 (775)
Q Consensus 513 ~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~n 588 (775)
..|+.+.|+.+|++++. +..|+++|.+++. .++++..+.+.|+++.|+++|.++ ++.++..|+++|.||+. ++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 46789999999998876 5789999999994 566778888899999999999998 99999999999999995 5578
Q ss_pred hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004074 589 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
+..+++.|+++.|+.+|.+++..++..|+++|.||+.... .+..+.. .|+++.|+++|.++++.+++.|+++|.+||.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999997544 4456665 5999999999999999999999999999999
Q ss_pred CChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 668 GNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 668 ~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.++..+..+.+.|+++.|+.++.++++.++++|..+|..|..
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 988899999999999999999999999999999999998864
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.84 E-value=6e-20 Score=221.70 Aligned_cols=275 Identities=18% Similarity=0.124 Sum_probs=239.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +..+|..|+..|.+++..++.++..+.+.|+|+.|+.+|.+ .+..++..++.+|.+++..++
T Consensus 234 g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~----~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 234 GGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHhcCCh
Confidence 4567788888887 89999999999999999988899999999999999999987 788999999999999987778
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+++..+++.|+++.|+.+|++++. .+.++++|.+|+....++..+...|+++.|+.+|.++ +...+..|+++|.+|
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHH
Confidence 899999999999999999998764 3568899999999888999999999999999999998 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcC-C-CHHHHHHHH
Q 004074 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDT-G-ELIEQEQAV 659 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~-~-s~~~~e~Av 659 (775)
+...... ....|+++.|+.+|.+.+..+++.|+++|.+|+... +.+..+.. .|+++.|+.+|.. + .+.+++.|+
T Consensus 388 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al 464 (780)
T 2z6g_A 388 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAI 464 (780)
T ss_dssp HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHH
Confidence 9765431 123579999999999999999999999999999875 55666666 5999999999985 3 358999999
Q ss_pred HHHHHhhcCChH---hHHHHHHCCCHHHHHHhhhcCCh-HHHHHHHHHHHHhHh
Q 004074 660 SCLFLLCNGNEK---CCQMVLQEGVIPALVSISVNGST-RGRDKAQRLLMLFRE 709 (775)
Q Consensus 660 ~~L~~Lc~~~~~---~~~~v~~~G~i~~Lv~Ll~~g~~-~~k~kA~~LL~~L~~ 709 (775)
.+|.+|+..+.+ .+..+...|+++.|+.++.+++. .+++.|+++|.+|..
T Consensus 465 ~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 999999975433 35578889999999999988875 999999999999974
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.83 E-value=6.4e-21 Score=169.73 Aligned_cols=77 Identities=27% Similarity=0.328 Sum_probs=71.7
Q ss_pred CCCCCCCccccccccccccCceecCCC-CccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004074 275 QMPLPPEELRCPISLQLMYDPVIIASG-QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~~G-~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
....+|++|.||||+++|+|||+++|| |||||.||++||.. +.+||+|++++....|+||+.|+++|+.|+.+|+..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 345689999999999999999999999 99999999999986 679999999999999999999999999999999753
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.83 E-value=3.5e-21 Score=167.08 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=70.1
Q ss_pred CCCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004074 275 QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
....+|++|.||||+++|+|||+++|||||||.||++|+.. +.+||.|++++....|+||..|+++|+.|+.+|+
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999999999999999985 7899999999999999999999999999999875
No 38
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.82 E-value=7.2e-21 Score=170.04 Aligned_cols=74 Identities=31% Similarity=0.423 Sum_probs=69.9
Q ss_pred CCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004074 276 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|+++++...|+||+.|+++|+.|+.+|+
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 4467999999999999999999999999999999999984 7899999999999999999999999999999886
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.80 E-value=2.6e-20 Score=182.53 Aligned_cols=76 Identities=34% Similarity=0.418 Sum_probs=71.4
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
..+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+++++...|+||+.|+++|+.|+..||+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 4679999999999999999999999999999999999875558999999999999999999999999999999874
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.76 E-value=3.7e-19 Score=151.71 Aligned_cols=76 Identities=63% Similarity=1.145 Sum_probs=72.1
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
..+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++....++||+.|+++|+.|..+|+++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 3578999999999999999999999999999999999987899999999999999999999999999999999873
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=7.7e-18 Score=180.02 Aligned_cols=236 Identities=16% Similarity=0.092 Sum_probs=186.1
Q ss_pred hHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHH-HhchhccCCCHHHHHHH
Q 004074 426 ERYQDFLNVLNEG-----------ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIG 493 (775)
Q Consensus 426 ~~i~~Ll~~L~s~-----------~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~-lL~s~~~~~d~~~qe~A 493 (775)
+.+...+..|.+. .+.+.+..|+..|..++.+ .+|...+...|++|+|+. +|.+ .++.+++.|
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s----~~~~vr~~A 102 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA----GAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC----SSHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC----CCHHHHHHH
Confidence 4555666666653 1346888999999999975 568888899999999999 9988 799999999
Q ss_pred HHHHHHhhccCCchhHHHHhhCcHHHHHHHhccC-Ch--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCH
Q 004074 494 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-NS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEH 569 (775)
Q Consensus 494 ~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~-~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~ 569 (775)
+++|.|++.+++.++..+++.|++|+|+.+|+++ +. +.+|+++|.+|+.+. ..+..+...|+++.|+.+|+++ +.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~ 181 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQ 181 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CH
Confidence 9999999987778899999999999999999864 33 588999999998754 4455677789999999999998 99
Q ss_pred HHHHHHHHHHHHhcCC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc-HHHHhhCCCcHHHH----
Q 004074 570 QCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGL---- 643 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~-~~~i~~~~g~I~~L---- 643 (775)
.++..|+++|.||+.. ++.+..++++|++++|+.+|.+++..+++.|+.+|.||+..... +.........+..+
T Consensus 182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~ 261 (296)
T 1xqr_A 182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261 (296)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence 9999999999999864 56889999999999999999999999999999999999987322 22222110112222
Q ss_pred HHHhc-CC-CHHHHHHHHHHHHHhhc
Q 004074 644 ATVLD-TG-ELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 644 v~lL~-~~-s~~~~e~Av~~L~~Lc~ 667 (775)
.+.|. .. ..++.+.|..++-....
T Consensus 262 ~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 262 CQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHccchHHHHHHHHHHHHHHHHHcC
Confidence 22233 22 35677777777766654
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.76 E-value=9.2e-18 Score=196.83 Aligned_cols=276 Identities=14% Similarity=0.114 Sum_probs=221.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+....+...|..+ +.+.+..|++.|..++.+ ++.|..+++ .|+++.|+.+|+.. .+..++..++.+|.|++...
T Consensus 334 ~La~~~~~~L~~~-~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~---~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 334 QLSEIFINAISRR-IVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQ---KMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HHHHHHHHHTTTC-CHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTT---CCTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCC
Confidence 4455666677776 677799999999999876 678888887 68899999999852 56778999999999997422
Q ss_pred Cc--------------------------------------hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC
Q 004074 505 NR--------------------------------------NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD 544 (775)
Q Consensus 505 ~~--------------------------------------nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~ 544 (775)
+. ++..++++|++|.|+.++.+++. ++.|+++|.+|+.+.
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 21 45667789999999999998875 688999999999999
Q ss_pred CccccccccCchHHHHHhhcCCCCHH---HHHHHHHHHHHhcCCCCChHHHH--H-cCcHHHHHHhccC--CCh------
Q 004074 545 DAKPIIGSSHAVPFLVELCKGKTEHQ---CKLDALHALYNLSTIPSNIPNLL--S-AGIISGLQSLAVP--GDP------ 610 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~---~k~~Al~aL~nLs~~~~nk~~iv--~-aG~V~~Lv~LL~~--~~~------ 610 (775)
++|..+.+.|++++|+.+|.++ +.. ++..|+.||.+|+...+....+- . .|+|++|++||.. +..
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 9999999999999999999988 443 89999999999986554433221 1 3999999999972 211
Q ss_pred ------HHHHHHHHHHHHHhCCc-----ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhH-HHHHH
Q 004074 611 ------MWTEKSLAVLLNLAASA-----AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCC-QMVLQ 678 (775)
Q Consensus 611 ------~i~e~al~~L~nLa~~~-----e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~ 678 (775)
.-+..|+.+|.|||+.+ +.|..|+.+.|+++.|..+|.++++.+|..|+.++.||+... +.. +.+..
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~ 646 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFN 646 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHh
Confidence 12578999999999987 347778874489999999999999999999999999999855 332 23322
Q ss_pred C------CCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004074 679 E------GVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 679 ~------G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
. +.++.|+.|+..++.++|+.|.++|.++.
T Consensus 647 ~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 647 LENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp CSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 2 23788999999999999999999999995
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.73 E-value=2.1e-17 Score=176.62 Aligned_cols=179 Identities=15% Similarity=0.042 Sum_probs=161.6
Q ss_pred HHHHHHHHhcccccCCccccccccCchHHHHH-hhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccC
Q 004074 530 HGAATALYLNLSFLDDAKPIIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVP 607 (775)
Q Consensus 530 ~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~-LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~ 607 (775)
+..|+..|.++....+++..+...|++|+||. +|.++ ++.++..|+++|.|++.+. .++..+++.|++++|+.+|.+
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 46688888888888788888888999999999 99998 9999999999999999765 578889999999999999985
Q ss_pred -CChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHH
Q 004074 608 -GDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL 685 (775)
Q Consensus 608 -~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~L 685 (775)
.+..+++.|+++|.||+.+ +.+...+... |+++.|+.+|.++++.++..|+++|.+|+.++++.+..+++.|+++.|
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 4788999999999999975 4556677774 899999999999999999999999999999888899999999999999
Q ss_pred HHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 686 VSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 686 v~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+.|+.+++..+++.|...|.++...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999888754
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.73 E-value=1.8e-18 Score=183.16 Aligned_cols=77 Identities=34% Similarity=0.406 Sum_probs=72.4
Q ss_pred CCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004074 276 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
...+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+++++...++||..|+++|+.|+..|++.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 45689999999999999999999999999999999999987777999999999999999999999999999999874
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-18 Score=150.49 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=64.6
Q ss_pred CCCccccccccccccCceecC-CCCccchHHHHHHHhcC-----CCCCCCCC--CC-CCCCCCcccHHHHHHHHHHHHHc
Q 004074 279 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDG-----HSTCPKTQ--QK-LPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~-----~~~CP~t~--~~-l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
.+++|.||||+++|+|||+++ |||||||.||++||..+ ..+||+|+ +. +....|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 478999999999999999996 99999999999999753 46899954 44 88899999999999999999887
Q ss_pred C
Q 004074 350 G 350 (775)
Q Consensus 350 ~ 350 (775)
+
T Consensus 84 ~ 84 (94)
T 2yu4_A 84 H 84 (94)
T ss_dssp C
T ss_pred c
Confidence 6
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.59 E-value=4.9e-16 Score=183.93 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCCCCccccccccccccCceecCCC-CccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004074 276 MPLPPEELRCPISLQLMYDPVIIASG-QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G-~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
..++|++|+|||++++|+|||++++| +||||.+|++|+.. +.+||.|+++|++.+++||++||+.|++||..|+
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 35789999999999999999999997 79999999999987 6799999999999999999999999999999986
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.59 E-value=2.2e-16 Score=127.60 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=50.3
Q ss_pred ccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 004074 282 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 337 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~ 337 (775)
.|.||||+++|+|||++ +|||||||.+|++|+.. +.+||+|+++|...+|+||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 69999999999999999 99999999999999986 457999999999999999853
No 48
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=129.52 Aligned_cols=75 Identities=28% Similarity=0.468 Sum_probs=68.3
Q ss_pred CCCCCccccccccccccCceecC-CCCccchHHHHHHHhc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcCC
Q 004074 277 PLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSD-GHSTCPKTQQKL-PHLCLTPNYCVKGLIASWCEMNGV 351 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~-~~~~CP~t~~~l-~~~~l~pn~~l~~~i~~~~~~~~i 351 (775)
..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.||+.|+++|+.|...+++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 45789999999999999999999 9999999999999974 457999999998 567899999999999999998875
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-14 Score=147.92 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=64.7
Q ss_pred CCCCccccccccccccCceec-CCCCccchHHHHHHHhc-CCCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 004074 278 LPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPK--TQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~CP~--t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
....+|.||||+++|+|||++ .|||+|||.||.+||.. +..+||+ |++++....|+||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 346899999999999999985 99999999999999986 4568999 99999999999999999999999775
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=128.71 Aligned_cols=69 Identities=13% Similarity=0.333 Sum_probs=63.7
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 004074 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASWCE 347 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~-~~l~pn~~l~~~i~~~~~ 347 (775)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.||+.|+++|+.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 467899999999999999999999999999999999767799999999987 789999999999988854
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=131.48 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=64.0
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 004074 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL-CLTPNYCVKGLIASWCE 347 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~-~l~pn~~l~~~i~~~~~ 347 (775)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.||..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999997777999999999887 89999999999998863
No 52
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.37 E-value=1e-11 Score=142.54 Aligned_cols=275 Identities=15% Similarity=0.174 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
.+++..|+.+|.+.--.+.|+.|+..|+.++++ .|..+ ..++++.|+..|+... .|.++...++.+|+++-..+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCC
Confidence 378999999998875689999999999999875 34444 3678999999998743 68888899999998875433
Q ss_pred Cc-----------------hhHHH-HhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC--Cccccccc-cCchHHHHH
Q 004074 505 NR-----------------NKELM-LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGS-SHAVPFLVE 561 (775)
Q Consensus 505 ~~-----------------nk~~i-~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~--~~k~~I~~-~g~i~~LV~ 561 (775)
+. +...+ .+.+.|+.|+.+|++.+. +-.++..|..|+... .++..|.. .++|+.||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 22 11223 346799999999998775 567888888777653 36777774 699999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH-cCcHHHHHHhccCC----ChHHHHHHHHHHHHHhCCcc-cHHHHhh
Q 004074 562 LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPG----DPMWTEKSLAVLLNLAASAA-GKEEMNS 635 (775)
Q Consensus 562 LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~~----~~~i~e~al~~L~nLa~~~e-~~~~i~~ 635 (775)
+|++. ...++-.|+..|.+|+.+..+..+++. .|+++.|+.++... ...+...|+.+|.||..... ++..+.+
T Consensus 174 lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 174 LLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998 899999999999999998888777777 69999999999653 34778999999999998654 6777777
Q ss_pred CCCcHHHHHHHhcCCCH------HHHHH---HHHHHHHhhcC------ChHhHHHHHHCCCHHHHHHhhhcC--ChHHHH
Q 004074 636 TPGLVSGLATVLDTGEL------IEQEQ---AVSCLFLLCNG------NEKCCQMVLQEGVIPALVSISVNG--STRGRD 698 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~------~~~e~---Av~~L~~Lc~~------~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~ 698 (775)
. |+++.|..++..+.+ ....+ ++.++.-|+.. ...+...+.+.|+++.|+.++... ...++.
T Consensus 253 t-~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~ 331 (651)
T 3grl_A 253 G-SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT 331 (651)
T ss_dssp T-TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred c-CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence 5 999999999975322 12333 56666677765 235677889999999999887754 566777
Q ss_pred HHHHHHHHh
Q 004074 699 KAQRLLMLF 707 (775)
Q Consensus 699 kA~~LL~~L 707 (775)
.|...+-.+
T Consensus 332 ~Al~tla~~ 340 (651)
T 3grl_A 332 ETINTVSEV 340 (651)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666443
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=116.69 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=64.7
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004074 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
+++++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|++++....+.||+.++++|+.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45789999999999999998 89999999999999985 579999999998889999999999999998765
No 54
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-13 Score=116.87 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=58.1
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcC------CCCCCCCCCCCCCCCCcccHHHHHHH
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG------HSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~------~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..+.+++.||||++.|.|||+++|||+||+.||.+|+... ...||.|++++....+.||+.|+++|
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 3467899999999999999999999999999999999753 67899999999988999998776543
No 55
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=9.6e-13 Score=113.24 Aligned_cols=66 Identities=30% Similarity=0.612 Sum_probs=58.3
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-----~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..+.++|.||||++.|.+||+++|||+||+.||.+|+.. +...||.|++++....+.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 346789999999999999999999999999999999976 367899999999988999998766543
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=2.1e-12 Score=116.82 Aligned_cols=67 Identities=13% Similarity=0.327 Sum_probs=61.1
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 004074 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL----CLTPNYCVKGLIASWC 346 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~----~l~pn~~l~~~i~~~~ 346 (775)
+++++.||||+++|.|||++ +|||+||+.||.+|+.. +.+||.|++++... .+.+|..+.++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 56799999999999999998 99999999999999986 48999999999865 7899999999998774
No 57
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=119.61 Aligned_cols=70 Identities=16% Similarity=0.319 Sum_probs=62.7
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHH
Q 004074 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-------LCLTPNYCVKGLIASWCE 347 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~-------~~l~pn~~l~~~i~~~~~ 347 (775)
...++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|..+|+.|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 3457899999999999999999999999999999998878899999999864 577889999999998853
No 58
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=111.73 Aligned_cols=66 Identities=26% Similarity=0.552 Sum_probs=58.3
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-----~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++....+.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 356789999999999999999999999999999999875 467899999999988999998766543
No 59
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=2.7e-12 Score=114.53 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=64.5
Q ss_pred CCCccccccccccccCcee-cCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004074 279 PPEELRCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~-~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
+.++|.||||+++|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+++|+.+..+++..-...
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4578999999999999999 9999999999999999876689999999999999999999999888776654
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.9e-12 Score=117.72 Aligned_cols=68 Identities=16% Similarity=0.310 Sum_probs=63.2
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004074 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|++++....+.||+.|+++++.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 46789999999999999999 9999999999999997 78999999998889999999999999987764
No 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.24 E-value=3.4e-12 Score=117.41 Aligned_cols=69 Identities=28% Similarity=0.449 Sum_probs=63.1
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 345 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~ 345 (775)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 356789999999999999999999999999999999987666999999999988899999999988764
No 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.1e-12 Score=109.50 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=55.0
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004074 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.||..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHH
Confidence 45678999999999999999999999999999999975 679999999996 7788996665544
No 63
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.24 E-value=9.6e-12 Score=104.56 Aligned_cols=60 Identities=32% Similarity=0.483 Sum_probs=51.0
Q ss_pred CCCCCCccccccccccccCceecC-CCCccchHHHHHHHhc-CCCCCCCCCCCCC-CCCCccc
Q 004074 276 MPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSD-GHSTCPKTQQKLP-HLCLTPN 335 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~-~~~l~pn 335 (775)
...+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++. ...+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345789999999999999999999 9999999999999985 4579999999854 4456665
No 64
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.22 E-value=3.3e-12 Score=124.60 Aligned_cols=70 Identities=26% Similarity=0.438 Sum_probs=62.7
Q ss_pred CCCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 004074 278 LPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASWCE 347 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~-~~l~pn~~l~~~i~~~~~ 347 (775)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++.. ..+.||..|.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 345789999999999999998 9999999999999999878899999999854 579999999999998844
No 65
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=101.16 Aligned_cols=56 Identities=14% Similarity=0.337 Sum_probs=49.9
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l 332 (775)
..+++++.||||++.|.+||+++|||+||+.||.+|+..++.+||.|++++....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34578999999999999999999999999999999998677899999999876543
No 66
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.5e-11 Score=101.32 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCCCCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004074 276 MPLPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
...+.+++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|++++....+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 34567899999999999999998 99999999999999976 6799999999988887776
No 67
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.1e-11 Score=112.72 Aligned_cols=70 Identities=24% Similarity=0.511 Sum_probs=61.2
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004074 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|++++....+.+|..+..+++.+...
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999985 346899999999999999998877777776543
No 68
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.15 E-value=2.2e-09 Score=123.31 Aligned_cols=278 Identities=17% Similarity=0.148 Sum_probs=206.7
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChh-----------------hh-HHhhccCchHHHHHHhchhccCCC
Q 004074 426 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEE-----------------AR-VFTGANGFVVALLRFLESAVCERN 486 (775)
Q Consensus 426 ~~i~~Ll~~L~s~-~~~~~q~~Al~~L~~Lak~~~~-----------------nr-~~i~~~G~I~~Lv~lL~s~~~~~d 486 (775)
.++..|+..|... ++.+.-..+++.|.++...+++ +. ..+.+.+.|+.|+.+|.+ .|
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----~d 135 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----FD 135 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC----CC
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----cc
Confidence 4567777777654 4778888888888877664432 11 224557999999999988 89
Q ss_pred HHHHHHHHHHHHHhhccCCc-hhHHHHh-hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCc-cccccccCchHHHHH
Q 004074 487 SYAQEIGAMALFNLAVNNNR-NKELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVE 561 (775)
Q Consensus 487 ~~~qe~A~~aL~nLs~~~~~-nk~~i~~-~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~-k~~I~~~g~i~~LV~ 561 (775)
..++..++.+|..|+.+... ++..|.. .++++.|+.+|+.... +..|+.+|.+|+.+... +..++-.|+++.|+.
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 99999999999999865554 6777774 5999999999998765 45688888888876654 555555799999999
Q ss_pred hhcCCC---CHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCCh-------HH--HHHHHHHHHHHhCCc-
Q 004074 562 LCKGKT---EHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDP-------MW--TEKSLAVLLNLAASA- 627 (775)
Q Consensus 562 LL~~~~---~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~-------~i--~e~al~~L~nLa~~~- 627 (775)
++.... ...+..+++..|.||..+. .|+..+.+.|+++.|..+|..++. .+ ...++.++.-|+...
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998641 2368899999999999765 599999999999999999864321 11 123777777777642
Q ss_pred ------ccHHHHhhCCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCChHhHHHHHHCC-----CHHHHHH----hhh
Q 004074 628 ------AGKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEG-----VIPALVS----ISV 690 (775)
Q Consensus 628 ------e~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G-----~i~~Lv~----Ll~ 690 (775)
.++.++..+ |++..|++++... +..++..|+.++..+.++++.....+.+.. ..|.++. ++.
T Consensus 296 ~~~~t~~nQ~~~~~~-g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~ 374 (651)
T 3grl_A 296 PPGATSSCQKAMFQC-GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN 374 (651)
T ss_dssp CHHHHHHHHHHHHHT-THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHC-CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence 245677775 9999999998854 788999999999999999987777776542 2333433 333
Q ss_pred c-CChHHHHHHHHHHHHhH
Q 004074 691 N-GSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 691 ~-g~~~~k~kA~~LL~~L~ 708 (775)
+ .....|-.|...++.+-
T Consensus 375 ~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 375 ERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 3 35677777777776664
No 69
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.2e-11 Score=99.01 Aligned_cols=56 Identities=27% Similarity=0.527 Sum_probs=49.3
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l~~~~l 332 (775)
..+.+++.||||++.|.|||+++|||+||+.||.+|+.. +...||.|++++....+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 356789999999999999999999999999999999973 56789999999876544
No 70
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.15 E-value=1.6e-11 Score=116.09 Aligned_cols=64 Identities=19% Similarity=0.486 Sum_probs=53.1
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 004074 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWC 346 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~ 346 (775)
.++|.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++... .+|+.+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 457899999999999999999999999999999975 67899999998643 34566666666554
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.09 E-value=3.6e-09 Score=106.01 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=154.7
Q ss_pred ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC
Q 004074 467 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD 544 (775)
Q Consensus 467 ~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~ 544 (775)
..+.++.|+.+|.+ .+..++..|+.+|..+. . .++++.|+.+|.+++. +..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG--D---------ERAVEPLIKALKDEDAWVRRAAADALGQIG--- 78 (211)
T ss_dssp CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---
T ss_pred CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC--C---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Confidence 46789999999987 79999999999998873 1 3688999999998775 456777776543
Q ss_pred CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004074 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
..++++.|+.+|.+. ++.++..|+.+|.++.. .++++.|+.+|.+++..++..|+.+|.++.
T Consensus 79 -------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 79 -------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp -------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 357899999999998 99999999999999853 358899999999999999999999999884
Q ss_pred CCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004074 625 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 625 ~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
. ...++.|+.++.+.++.++..|+.+|..+.. ..+++.|..++.++++.+|..|...|
T Consensus 141 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 141 D-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2 3578999999999999999999999999853 23677888999999999999999999
Q ss_pred HHhHhccCCC
Q 004074 705 MLFREQRQRD 714 (775)
Q Consensus 705 ~~L~~~~~~~ 714 (775)
..+.....+.
T Consensus 199 ~~~~~~~~~~ 208 (211)
T 3ltm_A 199 ETHKSFNHHH 208 (211)
T ss_dssp HC--------
T ss_pred HhcCCCCCCC
Confidence 8887665443
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=5.8e-11 Score=97.02 Aligned_cols=55 Identities=18% Similarity=0.436 Sum_probs=50.4
Q ss_pred Cccccccccc-cccCc----eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004074 281 EELRCPISLQ-LMYDP----VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 281 ~~f~CPIs~~-~m~dP----V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
+++.||||++ .+.+| |+++|||+||+.||.+|+..+...||.|++++....++|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777899999999988888876
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.07 E-value=4.7e-11 Score=116.97 Aligned_cols=68 Identities=26% Similarity=0.419 Sum_probs=62.6
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004074 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 345 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~ 345 (775)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+.+.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 57899999999999999999999999999999999987667999999999988899999999888753
No 74
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=6.4e-11 Score=108.43 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=56.6
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 004074 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT-PNYCVKGLIAS 344 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~-pn~~l~~~i~~ 344 (775)
++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++....+. ++..+.+++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4578999999999999999999999999999999987678999999999877665 45666666643
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.1e-10 Score=93.05 Aligned_cols=47 Identities=32% Similarity=0.604 Sum_probs=42.4
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCC
Q 004074 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKT 323 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t 323 (775)
..+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356789999999999999999999999999999999974 46789987
No 76
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.05 E-value=2e-11 Score=115.79 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=56.8
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC---------CCCcccHHHHHHHH
Q 004074 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH---------LCLTPNYCVKGLIA 343 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~---------~~l~pn~~l~~~i~ 343 (775)
.+.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 4678999999999999999999999999999999998777799999986532 24568888887775
No 77
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.03 E-value=8.3e-09 Score=108.09 Aligned_cols=224 Identities=12% Similarity=0.070 Sum_probs=163.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +..+|..|+..|..+. ..++++.|+.+|.+ .++.++..|+.+|..+.. ..
T Consensus 23 ~~i~~L~~~L~~~-~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~-~~ 85 (280)
T 1oyz_A 23 LNDDELFRLLDDH-NSLKRISSARVLQLRG-----------GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKI-CK 85 (280)
T ss_dssp SCHHHHHHHTTCS-SHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCC-CT
T ss_pred hhHHHHHHHHHcC-CHHHHHHHHHHHHccC-----------CchHHHHHHHHHcC----CCHHHHHHHHHHHHHhcc-cc
Confidence 3467788888887 8999999999998775 23578899999987 789999999999999852 22
Q ss_pred chhHHHHhhCcHHHHHH-HhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEK-MISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~-lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.... ..++.|.. ++...+. +..|+.+|..+..... .....+++.|+.+|.++ ++.++..|+.+|.++
T Consensus 86 ~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 86 KCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-STNVRRATAFAISVI 155 (280)
T ss_dssp TTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC
T ss_pred ccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC-CHHHHHHHHHHHHhc
Confidence 1111 13444443 3444543 4668888877653221 11235789999999988 999999999999887
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004074 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
.. .++++.|+.++.+.+..++..|+.+|..+... .+..++.|+.++.+.++.++..|+.+|
T Consensus 156 ~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 156 ND----------KATIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 43 35899999999988899999999999887422 124678889999888999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004074 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..+.. ..+++.|+.++.+.+ ++..|...|..+.
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 88762 346777877776644 6677777666553
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.03 E-value=1.1e-08 Score=102.51 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=152.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+.+..|+..|.++ ++.+|..|+..|..+.. .++++.|+.+|.+ .+..++..|+.+|..+. +
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~--~- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD----EDAWVRRAAADALGQIG--D- 79 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----SCHHHHHHHHHHHHHHC--C-
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcC----CCHHHHHHHHHHHHhhC--C-
Confidence 5677888889887 99999999999987542 4789999999987 79999999999999883 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.++++.|+.+|.+.+. +..|+.+|..+. ..++++.|+.+|.++ ++.++..|+.+|.++.
T Consensus 80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDE-DWFVRIAAAFALGEIG 140 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC
Confidence 3578999999988775 466777776553 346899999999998 9999999999999984
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004074 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
. ..+++.|+.++.+.+..++..|+.+|..+.. ..+++.|..++.+.++.++..|+.+|.
T Consensus 141 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2 3588999999999999999999999998843 356888999999999999999999999
Q ss_pred HhhcCC
Q 004074 664 LLCNGN 669 (775)
Q Consensus 664 ~Lc~~~ 669 (775)
.+....
T Consensus 200 ~~~~~~ 205 (211)
T 3ltm_A 200 THKSFN 205 (211)
T ss_dssp C-----
T ss_pred hcCCCC
Confidence 887654
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.02 E-value=1.2e-08 Score=101.35 Aligned_cols=185 Identities=17% Similarity=0.139 Sum_probs=154.3
Q ss_pred ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC
Q 004074 467 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD 544 (775)
Q Consensus 467 ~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~ 544 (775)
..+..+.++.+|.+ .++.++..|+.+|..+. . .++++.|+.+|.+++. +..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~----~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG--D---------ERAVEPLIKALKDEDAWVRRAAADALGQIG--- 73 (201)
T ss_dssp CHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred CCcchHHHHHHhcC----CCHHHHHHHHHHHHhcC--C---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Confidence 35778899999988 89999999999998873 1 3578999999987775 455777776542
Q ss_pred CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004074 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
..++++.|+.+|.+. ++.++..|+++|.++.. ..+++.|+.+|.+.+..++..|+.+|..+.
T Consensus 74 -------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 74 -------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp -------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 347899999999998 99999999999999843 358899999999999999999999999885
Q ss_pred CCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004074 625 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 625 ~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
. ...++.|+.++.+.++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|...|
T Consensus 136 ~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 136 D-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 3678999999999999999999999999832 12678888899999999999999999
Q ss_pred HHhHh
Q 004074 705 MLFRE 709 (775)
Q Consensus 705 ~~L~~ 709 (775)
..+..
T Consensus 194 ~~l~~ 198 (201)
T 3ltj_A 194 ETHKS 198 (201)
T ss_dssp HHCC-
T ss_pred HHHHh
Confidence 87753
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.00 E-value=2.3e-08 Score=99.37 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=152.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.....++..|.++ ++.+|..|+..|..+.. .++++.|+.+|.+ .++.++..|+.+|..+. +
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~--~- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD----EDAWVRRAAADALGQIG--D- 74 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C-
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcC----CCHHHHHHHHHHHHhhC--C-
Confidence 5677888899888 99999999999986542 3678999999987 78999999999998873 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.++++.|+.+|.+.+. +..|+.+|..+. ...+++.|+.+|.+. ++.++..|+++|.++.
T Consensus 75 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDE-DWFVRIAAAFALGEIG 135 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 2578999999988775 466777777543 346899999999988 9999999999999984
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004074 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
. .++++.|+.++.+.+..++..|+.+|..+.. ..+++.|..++.+.++.++..|+.+|.
T Consensus 136 ~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 4689999999999999999999999998832 246888999999999999999999998
Q ss_pred Hhh
Q 004074 664 LLC 666 (775)
Q Consensus 664 ~Lc 666 (775)
.+-
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 764
No 81
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.00 E-value=1.4e-10 Score=96.33 Aligned_cols=57 Identities=26% Similarity=0.583 Sum_probs=51.5
Q ss_pred CCCccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004074 279 PPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~ 336 (775)
..+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.|++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 45789999999999999 89999999999999999986 46999999999988888764
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=5.2e-10 Score=88.85 Aligned_cols=46 Identities=30% Similarity=0.728 Sum_probs=41.8
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCC
Q 004074 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKT 323 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t 323 (775)
.+.+++.||||++.|.+||+++|||+||+.||.+|+.. ++.+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45688999999999999999999999999999999864 57889987
No 83
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3e-10 Score=94.49 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=45.4
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
..+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 4578999999999999999999999999999999986 4799999998764
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=94.87 Aligned_cols=54 Identities=28% Similarity=0.508 Sum_probs=47.7
Q ss_pred CCCCCccccccccccccC----ceecCCCCccchHHHHHHHhcC--CCCCCCCCCCCCCC
Q 004074 277 PLPPEELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDG--HSTCPKTQQKLPHL 330 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~d----PV~~~~G~ty~r~~I~~w~~~~--~~~CP~t~~~l~~~ 330 (775)
..+.+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.|++++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 346788999999999999 9999999999999999999853 57899999987653
No 85
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8.1e-10 Score=90.91 Aligned_cols=52 Identities=25% Similarity=0.560 Sum_probs=46.6
Q ss_pred CCCCCccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 277 PLPPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
...++++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3457899999999999999 89999999999999999986 6799999998764
No 86
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.88 E-value=3.9e-10 Score=91.42 Aligned_cols=55 Identities=25% Similarity=0.550 Sum_probs=49.5
Q ss_pred CccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004074 281 EELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336 (775)
Q Consensus 281 ~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~ 336 (775)
+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.|++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 478999999999998 88999999999999999986 67999999999888877753
No 87
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.87 E-value=2.1e-09 Score=90.92 Aligned_cols=57 Identities=21% Similarity=0.435 Sum_probs=49.0
Q ss_pred CCCCccccccccccccCc---eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004074 278 LPPEELRCPISLQLMYDP---VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dP---V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
...+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 445789999999999987 44699999999999999975 5799999999988777665
No 88
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.85 E-value=3e-09 Score=90.11 Aligned_cols=55 Identities=18% Similarity=0.427 Sum_probs=47.3
Q ss_pred CCCCccccccccccc--cCceecC--CCCccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004074 278 LPPEELRCPISLQLM--YDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m--~dPV~~~--~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l 332 (775)
...+++.||||++.| .||++.+ |||+||+.||.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999999 5777776 999999999999998778899999999876543
No 89
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.84 E-value=7.3e-08 Score=100.87 Aligned_cols=199 Identities=13% Similarity=0.029 Sum_probs=152.3
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc
Q 004074 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF 542 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~ 542 (775)
+...+.++.|+..|.+ .++.++..|+.+|.++. ..++++.|+.+|.+.+. +..|+.+|..+..
T Consensus 19 ~~~~~~i~~L~~~L~~----~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDD----HNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp HHHTSCHHHHHHHTTC----SSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred HHHHhhHHHHHHHHHc----CCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 4456889999999987 78999999999999984 13578999999998775 4668888876653
Q ss_pred cCCccccccccCchHHHHH-hhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHH
Q 004074 543 LDDAKPIIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 543 ~~~~k~~I~~~g~i~~LV~-LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~ 621 (775)
.... + ...++.|.. ++.+. ++.++..|+++|.++...... ....+++.|+.++.+++..++..|+.+|.
T Consensus 84 ~~~~---~--~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 84 CKKC---E--DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp CTTT---H--HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cccc---c--hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 2211 0 112334442 34566 899999999999999632211 12346889999999999999999999998
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHH
Q 004074 622 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ 701 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~ 701 (775)
++.. ++.++.|+.++.+.++.++..|+.+|..+...++ .+++.|+.++.+.++.+|..|.
T Consensus 154 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 154 VIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp TC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHH
T ss_pred hcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHH
Confidence 7643 3589999999999999999999999999864442 3578889999999999999999
Q ss_pred HHHHHhH
Q 004074 702 RLLMLFR 708 (775)
Q Consensus 702 ~LL~~L~ 708 (775)
..|..+.
T Consensus 214 ~aL~~~~ 220 (280)
T 1oyz_A 214 IGLSYRK 220 (280)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9988765
No 90
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=6.4e-09 Score=86.00 Aligned_cols=52 Identities=23% Similarity=0.527 Sum_probs=46.3
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004074 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 331 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~ 331 (775)
...+++.||||++.+.+ ++++|||+|++.||.+|+. .+.+||.|++++....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 9999999999999999998 4789999998886543
No 91
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.65 E-value=7.7e-09 Score=96.31 Aligned_cols=55 Identities=24% Similarity=0.512 Sum_probs=49.8
Q ss_pred CCccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004074 280 PEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
++++.||||++.|.|| |+++|||+|++.||.+|+.. +.+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5789999999999999 99999999999999999986 5699999999988777665
No 92
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.65 E-value=4.9e-08 Score=118.62 Aligned_cols=275 Identities=13% Similarity=0.116 Sum_probs=184.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..+.+. +.++|..|+..|..+.......-. -.-.++++.|+.++.+ .+..++..|+.+|.+++....
T Consensus 174 ~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~-~~~~~~l~~l~~~~~d----~~~~vr~~a~~~L~~l~~~~~ 247 (852)
T 4fdd_A 174 IMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALM-LHIDSFIENLFALAGD----EEPEVRKNVCRALVMLLEVRM 247 (852)
T ss_dssp HHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHH-TSHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhCH
Confidence 3445556666666 899999999999888765432110 0113577888887776 789999999999999975322
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccc--cCchHHHHHhh-----------cC--C--
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELC-----------KG--K-- 566 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL-----------~~--~-- 566 (775)
..-...+ .++++.++.++.+.+. +..|+..+..++.....+..+.. ...+|.|+..+ .+ .
T Consensus 248 ~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 248 DRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 1111111 2578888888877654 46677777777755433332221 25677777776 22 0
Q ss_pred ------CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcH
Q 004074 567 ------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV 640 (775)
Q Consensus 567 ------~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I 640 (775)
.+..+++.|+.+|..|+...+. .++ ..+++.|.+++.+.+...++.|+.+|.+++........-.. ++.+
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l 402 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELI 402 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHH
Confidence 1234688899999888753321 122 23667777788888899999999999999986542211111 3678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004074 641 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
+.|+..+.+.++.++..|+.+|..++...........-.++++.|+..+.+.++++|+.|...|..+.+..
T Consensus 403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998632111001111246788888888889999999999998887553
No 93
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.9e-08 Score=82.96 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=45.1
Q ss_pred CCCCCccccccccccccCceec---CCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 277 PLPPEELRCPISLQLMYDPVII---ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~---~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
....++..||||++.|.+|+.+ +|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 3456789999999999988766 99999999999999986 4599999998754
No 94
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.65 E-value=9.5e-08 Score=113.48 Aligned_cols=190 Identities=15% Similarity=0.086 Sum_probs=145.3
Q ss_pred cHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHH-HhhcCCCCHHHHHHHHHHHHHhcCC--CCChH
Q 004074 516 VIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLV-ELCKGKTEHQCKLDALHALYNLSTI--PSNIP 590 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV-~LL~~~~~~~~k~~Al~aL~nLs~~--~~nk~ 590 (775)
.+.+++..|++++. +..|+++|.+|+.+...+..+...|+|.+++ .+|.+. +.+++..|+++|.||+.. .+.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence 34456677888765 7889999999998888888888888888765 567777 999999999999999964 46789
Q ss_pred HHHHcCcHHHHHHhccCC--------------C-------hHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhc
Q 004074 591 NLLSAGIISGLQSLAVPG--------------D-------PMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLD 648 (775)
Q Consensus 591 ~iv~aG~V~~Lv~LL~~~--------------~-------~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~ 648 (775)
.+++.|++++|..+|... . ..+.+.++.+|++||...+ ....+.. .+.++.|+..|.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFRLI 192 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHHHH
Confidence 999999999999987421 0 1345678899999997544 4455665 589999999885
Q ss_pred C---CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHH---HHHHhhhcCChHHHHHHHHHHHHhH
Q 004074 649 T---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIP---ALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 649 ~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~---~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
. ....++..|+.+|+.++..+....+.+.+.|... .|+.+..+ +...+.-++.+|.++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 3 3578999999999999999988888888887533 33344443 4444667777877764
No 95
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.64 E-value=1.5e-07 Score=114.24 Aligned_cols=271 Identities=13% Similarity=0.115 Sum_probs=188.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHH--hh--ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TG--ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~--i~--~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
+.+..++..+.++ +...+..|+..|..++++.+..-.. +. -.+.++.|++++.+ .+..++..|+.+|.++.
T Consensus 128 ~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 128 DLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH----SSPKIRSHAVACVNQFI 202 (852)
T ss_dssp THHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC----SSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHH
Confidence 5677788888887 8899999999999998764332111 00 13456666776665 78999999999998885
Q ss_pred ccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCc--cccccccCchHHHHHhhcCCCCHHHHHHHHH
Q 004074 502 VNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALH 577 (775)
Q Consensus 502 ~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~--k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~ 577 (775)
.... ....-.-.+.++.|..++..++. +..|+.+|..++..... +..+ .+.++.++.++.+. +..++..|+.
T Consensus 203 ~~~~-~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~-~~~vr~~a~e 278 (852)
T 4fdd_A 203 ISRT-QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQ-DENVALEACE 278 (852)
T ss_dssp TTTC-HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred hccc-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCC-cHHHHHHHHH
Confidence 4222 11111113578888888877765 46688888777654221 1122 35788899999887 8999999999
Q ss_pred HHHHhcCCCCChHHHHH---cCcHHHHHHhc-----------cC-----------CChHHHHHHHHHHHHHhCCcccHHH
Q 004074 578 ALYNLSTIPSNIPNLLS---AGIISGLQSLA-----------VP-----------GDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 578 aL~nLs~~~~nk~~iv~---aG~V~~Lv~LL-----------~~-----------~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
.+..++.....+. .+. ...++.|+..+ .+ .+-.++..|..+|..|+.... ..
T Consensus 279 ~l~~l~~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~ 355 (852)
T 4fdd_A 279 FWLTLAEQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE 355 (852)
T ss_dssp HHHHHTTSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHhcchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 9999987553332 222 24566676665 22 122346778888888876432 12
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004074 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
+.. ..++.+...+.+.++..|+.|+.+|.+++.+..+.... .-.++++.|+.++.+.++.+|..|...|..+...-
T Consensus 356 ~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 356 LLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp GHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 332 46777888888889999999999999999876443222 22457889999999999999999999998888753
No 96
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.63 E-value=1.7e-08 Score=82.92 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=42.7
Q ss_pred CccccccccccccCc-eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 281 EELRCPISLQLMYDP-VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 281 ~~f~CPIs~~~m~dP-V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.+..||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999998 67899999999999999975 5799999988753
No 97
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.63 E-value=1.7e-08 Score=79.08 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=42.2
Q ss_pred CccccccccccccC----ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004074 281 EELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~d----PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46889999999977 8889999999999999999874 89999998874
No 98
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=8.1e-09 Score=81.64 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=41.0
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.+++.||||++.+.||++++|||+||+.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467999999999999999999999999999884 6689999988753
No 99
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=7.3e-08 Score=79.28 Aligned_cols=50 Identities=20% Similarity=0.589 Sum_probs=42.9
Q ss_pred CCCcccccccccccc---CceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 279 PPEELRCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~---dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
...+..||||++.|. +|++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 456789999999884 5678999999999999999986 4579999998754
No 100
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.55 E-value=4.3e-08 Score=76.80 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=42.5
Q ss_pred CCccccccccccccC---ceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYD---PVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~d---PV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.++..||||++.|.+ +++++ |||+|++.||.+|+.. +.+||.|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 457899999999999 88887 9999999999999976 679999998763
No 101
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.55 E-value=3.7e-08 Score=85.97 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=44.4
Q ss_pred CCCccccccccccccC---ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 279 PPEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
..++..||||++.|.+ +++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4568899999999988 888999999999999999975 6799999988754
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.54 E-value=1.8e-07 Score=111.18 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=128.4
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhCC--cccH
Q 004074 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS--AAGK 630 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~--~e~~ 630 (775)
..|.||++.|+++ ++..+..|++||.||+.++.++..++..|+|..++. +|.+.+..+++.|+++|.||+.. .+.+
T Consensus 34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 4567888999998 999999999999999998889999999999988766 78889999999999999999864 4556
Q ss_pred HHHhhCCCcHHHHHHHhcCCC---------------------HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhh
Q 004074 631 EEMNSTPGLVSGLATVLDTGE---------------------LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS 689 (775)
Q Consensus 631 ~~i~~~~g~I~~Lv~lL~~~s---------------------~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll 689 (775)
..+.+. |+++.|..++.... ....++++.+|++||..+.+....+...|+++.|+.++
T Consensus 113 ~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 113 VHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 677775 89999999885211 13456889999999988878888888999999999776
Q ss_pred hcC---ChHHHHHHHHHHHHhHhc
Q 004074 690 VNG---STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 690 ~~g---~~~~k~kA~~LL~~L~~~ 710 (775)
.+. ...++..|..+|..|.+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc
Confidence 442 457888888888888654
No 103
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.52 E-value=6.8e-08 Score=87.81 Aligned_cols=50 Identities=16% Similarity=0.394 Sum_probs=43.1
Q ss_pred CCccccccccccccCce------------------ecCCCCccchHHHHHHHh----cCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYDPV------------------IIASGQTYERICIEKWLS----DGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV------------------~~~~G~ty~r~~I~~w~~----~~~~~CP~t~~~l~~ 329 (775)
+.+..||||++.|.+|+ +++|||.|++.||.+|+. ..+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 45679999999999987 789999999999999996 346799999988753
No 104
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=4.4e-08 Score=82.12 Aligned_cols=49 Identities=18% Similarity=0.505 Sum_probs=43.8
Q ss_pred CCccccccccccccCc---eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYDP---VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP---V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.++..||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4678999999999998 77899999999999999986 5799999998764
No 105
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.50 E-value=3.1e-06 Score=98.62 Aligned_cols=262 Identities=12% Similarity=0.074 Sum_probs=175.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004074 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..+...|.+. ++.+|.+|+..+..+.+.+++ .+.+.|+++.|..+|.+ .|+.++.+|+.+|..++..+.+.
T Consensus 123 ~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 123 CEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCCc
Confidence 34456666666 999999999999999987654 23336889999999987 79999999999999997543322
Q ss_pred hHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004074 508 KELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
...-...+.++.|+..|...+.. ...+.++..+...+.. .....++.|..+|++. +..++..|++++.++...
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHA-NSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCS
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhc
Confidence 11112234577777777766653 3455555555432210 1135688888888887 889999999999999742
Q ss_pred ----CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cc---------------c----HHHH-----hhC
Q 004074 586 ----PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AA---------------G----KEEM-----NST 636 (775)
Q Consensus 586 ----~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e---------------~----~~~i-----~~~ 636 (775)
++.... +-..++++|+.++. .+..++..|+.+|..++.. ++ . +.++ +.+
T Consensus 270 ~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 270 LPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp CCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC
Confidence 222222 33446677887664 6777888888888877641 11 0 1110 001
Q ss_pred CC----cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 637 PG----LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 637 ~g----~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+. .+..|.+.+...+...+..++.++..+|...+... ...++.|+.++....+.++..+...++.+-.
T Consensus 348 ~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 22 34445556667889999999999999997654332 2357888888888888888777766665543
No 106
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.49 E-value=1.1e-06 Score=100.98 Aligned_cols=257 Identities=11% Similarity=0.002 Sum_probs=182.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHH
Q 004074 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 510 (775)
Q Consensus 431 Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~ 510 (775)
+...+.+. ++.+|..++..|..++..-.. .......+|.+..+|.+ .+..++..++.+|..+...... .
T Consensus 329 l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~--~- 397 (588)
T 1b3u_A 329 IKELVSDA-NQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKD----ECPEVRLNIISNLDCVNEVIGI--R- 397 (588)
T ss_dssp HHHHHTCS-CHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTC----SCHHHHHHHHTTCHHHHHHSCH--H-
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHhcCH--H-
Confidence 33445555 899999999999888753111 11123467888888876 6889999999888877532111 1
Q ss_pred HHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCC
Q 004074 511 MLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 588 (775)
Q Consensus 511 i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~n 588 (775)
......+|.|..++...+. +..++.++..++..-.. .......+|.++.+|.+. +..+++.|+.+|..++..-+.
T Consensus 398 ~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCc
Confidence 1234678899998877654 45566666666532111 112235689999999988 899999999999999754332
Q ss_pred hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004074 589 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
. .....++|.|+.++.+.+..++..++.++..++..- +...+.. ..++.|+..+.+..+.+|..++.+|..++..
T Consensus 475 ~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~~~~~~--~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 475 E--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-GQDITTK--HMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp H--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHH--HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred h--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-CHHHHHH--HHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 2 223457888888888888888999999999987632 2222332 5789999999999999999999999999864
Q ss_pred ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 669 NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 669 ~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
-.. ......++|.|..++.+.+..+|..|...|..+.+
T Consensus 550 ~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 550 LDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp SCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 211 12234567778788888999999999999987754
No 107
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.49 E-value=1.9e-06 Score=98.88 Aligned_cols=264 Identities=14% Similarity=0.108 Sum_probs=174.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+.+++..+...+++.+|..|+..|..++...... ......+|.|..++.+ ++..++..|+.+|..++...+.
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCH
Confidence 44455444433338999999999999998653321 1234677888888876 7889999999999988643221
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004074 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
......++|.+..++...+. +..|+.+|..++..-.. .......++.++.++++. ++.++..|+.+|..++.
T Consensus 237 ---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 237 ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCE 310 (588)
T ss_dssp ---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHH
Confidence 12334578888888877664 46677777666542111 111246789999999988 99999999999999985
Q ss_pred CCC--ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004074 585 IPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 585 ~~~--nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
.-. .+....-..++|.+..++.+.+..++..++.+|..++..-. ..... +..++.+..++.+.++.++..|+.+|
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l 387 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNIISNL 387 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHHHTTC
T ss_pred HhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHHH--HHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 432 22223345678888888888888888988888888875321 12222 24678888888888888888888887
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
..++..-... .....++|.|..++.+.+.++|..+...|..+..
T Consensus 388 ~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 388 DCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 7776421110 0112345555555555556666666655555543
No 108
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.48 E-value=1.5e-06 Score=96.62 Aligned_cols=276 Identities=13% Similarity=0.078 Sum_probs=180.6
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCC--CHHHHHHHHHHHHHhh
Q 004074 426 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCER--NSYAQEIGAMALFNLA 501 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~--d~~~qe~A~~aL~nLs 501 (775)
+.+..++..+.++. +...+..|+..|..++++. .+.-... -..+++.++.+|.+ . +..++..|+.++.++.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~----~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRK----EEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHST----TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHHH
Confidence 55666777776643 6788999999999998753 2110111 13467778888876 4 7899999999999864
Q ss_pred ccCCchh-HHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC--ccccccccCchHHHHHhhcCCCCHHHHHHHH
Q 004074 502 VNNNRNK-ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDAL 576 (775)
Q Consensus 502 ~~~~~nk-~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~--~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al 576 (775)
..-..+- ..+...-.++.|...+.+.+. +..++.+|..+..... .+..+. .+.++.++..+++. +..++..|+
T Consensus 203 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~v~~~a~ 280 (462)
T 1ibr_B 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD-IDEVALQGI 280 (462)
T ss_dssp TTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS-SHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-chHHHHHHH
Confidence 2111110 011112246666666665554 4557777766654322 112221 17788888888887 899999999
Q ss_pred HHHHHhcCCC------------------CChHHHHH---cCcHHHHHHhccC-------CChHHHHHHHHHHHHHhCCcc
Q 004074 577 HALYNLSTIP------------------SNIPNLLS---AGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 577 ~aL~nLs~~~------------------~nk~~iv~---aG~V~~Lv~LL~~-------~~~~i~e~al~~L~nLa~~~e 628 (775)
..+..++... .....+++ ..++|.|+..|.+ .+...+..|+.+|..|+..-.
T Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~ 360 (462)
T 1ibr_B 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (462)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc
Confidence 9999887532 01111221 3366777776643 234567888889988876433
Q ss_pred cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-HhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004074 629 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
..+.. ..++.+...+.+.+...++.|+.+|..++.+.. +..... -..++|.|+.++.+.++.+|..|...|..+
T Consensus 361 --~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~ 435 (462)
T 1ibr_B 361 --DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (462)
T ss_dssp --TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred --HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 12332 466777778888899999999999999997542 111111 146889999999999999999999999998
Q ss_pred HhccCC
Q 004074 708 REQRQR 713 (775)
Q Consensus 708 ~~~~~~ 713 (775)
...-..
T Consensus 436 ~~~~~~ 441 (462)
T 1ibr_B 436 CELLPE 441 (462)
T ss_dssp HHHGGG
T ss_pred HHhccc
Confidence 876543
No 109
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.44 E-value=4.2e-08 Score=82.17 Aligned_cols=45 Identities=22% Similarity=0.388 Sum_probs=41.4
Q ss_pred CCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.|++++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 467899999999999999999999 999999999 789999998753
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.40 E-value=1.2e-07 Score=103.10 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=44.8
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004074 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 330 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~ 330 (775)
...||||++.+.|||+++|||+||+.||..|+..++.+||.|++++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999986678999999988654
No 111
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.37 E-value=4e-06 Score=97.72 Aligned_cols=253 Identities=15% Similarity=0.161 Sum_probs=178.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..+-..|.++ +.+.+.+++..|-.+...+.+. ..+.+.+++++.+ .+...+..+..++.+++..+++
T Consensus 14 e~~~i~~~L~~~-~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s----~~~~~Krl~yl~l~~~~~~~~e 82 (591)
T 2vgl_B 14 EIFELKAELNNE-KKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQT----DNLELKKLVYLYLMNYAKSQPD 82 (591)
T ss_dssp HHHHHHHHTTSS-CHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSS----SCHHHHHHHHHHHHHHHHHSHH
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccCch
Confidence 455666678887 7888888887776654333321 2456678888877 7899999888888888542211
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004074 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
. -.-++..|.+-|.+++. +..|+.+|.++...+ + ....++.+.++|.+. ++.+++.|+.+|.++..
T Consensus 83 ~-----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~-----~-~~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~ 150 (591)
T 2vgl_B 83 M-----AIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDK-----I-TEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHD 150 (591)
T ss_dssp H-----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGG-----G-HHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHH-----H-HHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHh
Confidence 1 12346677777877776 456777776664111 1 134678899999988 99999999999999986
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004074 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 664 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~ 664 (775)
.... .+.+.|.++.|..+|.+.++.++..|+.+|..++........+.-..+.+..|+..+...++..+-..+.+|..
T Consensus 151 ~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~ 228 (591)
T 2vgl_B 151 INAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSN 228 (591)
T ss_dssp SSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred hChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 3322 22346889999999999999999999999999987643220000001346777888878899999999999988
Q ss_pred hhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 665 LCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 665 Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
++..++.... .+++.|..++.+.++.++..|..++..+..
T Consensus 229 l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 229 YNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp SCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred hCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 8866543322 346677777888888888888888877653
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.35 E-value=7.2e-08 Score=89.63 Aligned_cols=56 Identities=25% Similarity=0.549 Sum_probs=50.6
Q ss_pred CCccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004074 280 PEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~ 336 (775)
++.+.||||++.+.+| |+++|||+|+..||.+|+.. +.+||.|+.++....+.|++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 5789999999999998 88999999999999999986 56999999999888887764
No 113
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3.2e-07 Score=76.96 Aligned_cols=45 Identities=22% Similarity=0.388 Sum_probs=40.2
Q ss_pred CCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.+++.||||++.+.|||+++|||+ ||+.|+.++ ..||.|++++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 457899999999999999999999 999999643 689999998865
No 114
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.21 E-value=2.2e-07 Score=81.45 Aligned_cols=66 Identities=11% Similarity=0.320 Sum_probs=49.3
Q ss_pred CccccccccccccCceec---CCCCccchHHHHHHHh----cC---CCCCCC--CCCC--CCCCCCcccHHHHHHHHHHH
Q 004074 281 EELRCPISLQLMYDPVII---ASGQTYERICIEKWLS----DG---HSTCPK--TQQK--LPHLCLTPNYCVKGLIASWC 346 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~---~~G~ty~r~~I~~w~~----~~---~~~CP~--t~~~--l~~~~l~pn~~l~~~i~~~~ 346 (775)
+.|.||||++.+.+|+++ +|||+||+.||..|+. +| ...||. |++. ++...+. +....++++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence 578999999999999876 6999999999999986 33 247999 9887 5433222 333356667776
Q ss_pred H
Q 004074 347 E 347 (775)
Q Consensus 347 ~ 347 (775)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 5
No 115
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1e-06 Score=75.03 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=40.5
Q ss_pred CccccccccccccC--------------ceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 281 EELRCPISLQLMYD--------------PVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 281 ~~f~CPIs~~~m~d--------------PV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 56779999999988 4455 59999999999999986 5699999998753
No 116
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.11 E-value=0.00012 Score=85.67 Aligned_cols=248 Identities=15% Similarity=0.115 Sum_probs=167.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004074 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..+...|.+. ++.+|.+|+..+..+.+.+++.- .++++.|..+|.+ .|+.++..|+.+|..++..+.+.
T Consensus 144 ~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D----~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 144 AGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNE----KNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTC----CCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCC----CCHhHHHHHHHHHHHHHHhChHH
Confidence 45556667777 99999999999999998776532 2678888888876 79999999999999996422111
Q ss_pred hHHHHhhCcHHHHHHHhcc---------------CCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhc------
Q 004074 508 KELMLAAGVIPLLEKMISN---------------SNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK------ 564 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s---------------~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~------ 564 (775)
... -...+|.++.+|.. .+. +...+.+|..+...+.. . ....++.|..++.
T Consensus 214 ~~~--~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~---~-~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 214 LAH--FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD---S-SEAMNDILAQVATNTETSK 287 (618)
T ss_dssp HHH--HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH---H-HHTTHHHHHHHHHTSCCSS
T ss_pred HHH--HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHHHHhcccccc
Confidence 111 13678888888763 122 24455556555543211 0 1234555666553
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004074 565 GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
+. +..+.-.|++++.++... ..++. .++..|..+|.+.++.++..|+.+|..++... ..++. .....++
T Consensus 288 ~~-~~aV~~ea~~~i~~l~~~----~~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~--~~~~~i~ 356 (618)
T 1w63_A 288 NV-GNAILYETVLTIMDIKSE----SGLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ--RHRSTIV 356 (618)
T ss_dssp TH-HHHHHHHHHHHHHHSCCC----HHHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG--GGHHHHH
T ss_pred ch-HHHHHHHHHHHHHhcCCC----HHHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH--HHHHHHH
Confidence 22 457888889999887542 22222 47788888888888888899999999888642 22332 3567888
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 645 TVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 645 ~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
..+.+.+..++..|+.+|..|+..+. ... ++..|+..+.+.+...|..+...|..+..
T Consensus 357 ~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 357 DCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88888889999999999999987642 222 23556666666677777777766666654
No 117
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.07 E-value=1.8e-06 Score=70.06 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=43.1
Q ss_pred CCccccccccccccCceec--CCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYDPVII--ASGQT-YERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~--~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+++..|+||++-+.|+|++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4677999999999999988 99999 899999999975 568999999874
No 118
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.07 E-value=3.3e-05 Score=93.15 Aligned_cols=273 Identities=8% Similarity=0.035 Sum_probs=173.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhh-HHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 428 YQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEAR-VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 428 i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~~~nr-~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+..++..+...+ +.++|..|+..|..++..-..+- .......+++.+..++.+ .+..++..++.+|..+.....
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhH
Confidence 444555565542 57899999999998875422211 001111256666666654 688999999999999875333
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-------------------Cccccccc--cCchHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-------------------DAKPIIGS--SHAVPFLVEL 562 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-------------------~~k~~I~~--~g~i~~LV~L 562 (775)
..-...+....++.+...+...+. +..|+..+..++... .....+.. ...++.++.+
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 222223334788888887766543 344555555554321 00011110 3457778888
Q ss_pred hcCC------CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc--cHHHHh
Q 004074 563 CKGK------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA--GKEEMN 634 (775)
Q Consensus 563 L~~~------~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e--~~~~i~ 634 (775)
|... .+...++.|+.+|..|+..-.. .++. .+++.+...+.+.+..+++.|+.+|..++.... ......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7521 1456888999999888743221 1222 456666677778888999999999999987543 222333
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhH-HHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCC-QMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
...++.|+..+.+.++.++..|+.+|..++....... ..-.-..+++.|+..+.+. ++++..|.+.|..+...
T Consensus 407 --~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 --IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 2578999999999999999999999999996532210 0000123567777777664 89999999998888765
No 119
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.01 E-value=0.00025 Score=85.42 Aligned_cols=275 Identities=13% Similarity=0.081 Sum_probs=177.1
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccC-hhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004074 426 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDD-EEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~-~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
+.+..++..+.++. +..++..++..|..++..- ++. +.. ...++.++..|.+. ..+..++..|+.+|.++.
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSL 202 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH---HGGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh---HHhHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHH
Confidence 45666666676542 6788999999999998652 221 111 34566677777651 016889999999999875
Q ss_pred ccCCch-hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCc--cccccccCchHHHHHhhcCCCCHHHHHHHH
Q 004074 502 VNNNRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDAL 576 (775)
Q Consensus 502 ~~~~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~--k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al 576 (775)
..-..+ .........++.+...+...+. +..++.+|..+...... ...+ ....++.++..+.+. +..++..|+
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~v~~~al 280 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGI 280 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCC-chHHHHHHH
Confidence 321111 0111112367777777765554 35566666665543211 1111 136788888888877 889999999
Q ss_pred HHHHHhcCCC-------------------C--ChHHHHHcCcHHHHHHhccC-------CChHHHHHHHHHHHHHhCCcc
Q 004074 577 HALYNLSTIP-------------------S--NIPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 577 ~aL~nLs~~~-------------------~--nk~~iv~aG~V~~Lv~LL~~-------~~~~i~e~al~~L~nLa~~~e 628 (775)
..+.+++... . +...-.-..+++.++.+|.. .+..++..|+.+|..|+..-.
T Consensus 281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~ 360 (876)
T 1qgr_A 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc
Confidence 9998887431 0 11110113467777787742 234566788888888876432
Q ss_pred cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-HhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004074 629 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
. .+.. ..++.+...+.+.++..|+.|+.+|..++.+.. +.....+ ..+++.|+..+.+.++.+|..|...|..+
T Consensus 361 ~--~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 361 D--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (876)
T ss_dssp G--GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H--hhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1 2222 456667777778899999999999999997643 3222222 34788899999999999999999999988
Q ss_pred HhccC
Q 004074 708 REQRQ 712 (775)
Q Consensus 708 ~~~~~ 712 (775)
...-.
T Consensus 436 ~~~~~ 440 (876)
T 1qgr_A 436 CELLP 440 (876)
T ss_dssp HHHCG
T ss_pred HHhCc
Confidence 87643
No 120
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.01 E-value=2.7e-06 Score=68.78 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=42.3
Q ss_pred CccccccccccccCceec--CCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004074 281 EELRCPISLQLMYDPVII--ASGQT-YERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~--~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.+..|+||++-++|+|++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 466899999999999998 99998 999999999876 478999999875
No 121
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.96 E-value=2.1e-05 Score=94.71 Aligned_cols=268 Identities=12% Similarity=0.063 Sum_probs=169.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCh-hhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchh-H
Q 004074 432 LNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK-E 509 (775)
Q Consensus 432 l~~L~s~~~~~~q~~Al~~L~~Lak~~~-~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk-~ 509 (775)
...+.+. +|..|..|+..|..++.... +.-.... ..+++.|+..+.+ .++.++..++++|..++..-...- .
T Consensus 375 ~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 375 EQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMND----QSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 3345555 89999999999999996532 2111111 2467778887766 689999999999998864211100 0
Q ss_pred HHHhhCcHHHHHHHhccCCh-HHHHHHHHhcccccCC--ccccccc--cCchHHHHHhhcCC-CCHHHHHHHHHHHHHhc
Q 004074 510 LMLAAGVIPLLEKMISNSNS-HGAATALYLNLSFLDD--AKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLS 583 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~--~k~~I~~--~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs 583 (775)
.-.-..++|.|+..|..... +..|++++.+++..-. ....+.. ...++.|+.++.+. .+..++..++.+|..+.
T Consensus 449 ~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 00123467888888876522 4668888877664321 1122222 45688888999753 13678999999999998
Q ss_pred CCCCCh-HHHHHcCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhCCccc-HHHHhhCCCcHHHHHHH
Q 004074 584 TIPSNI-PNLLSAGIISGLQSLAVP---------------GDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGLATV 646 (775)
Q Consensus 584 ~~~~nk-~~iv~aG~V~~Lv~LL~~---------------~~~~i~e~al~~L~nLa~~~e~-~~~i~~~~g~I~~Lv~l 646 (775)
...... ...+ ...++.+++.+.. ....++..++.+|.+++..-.. ..... ...++.++.+
T Consensus 529 ~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~ 605 (861)
T 2bpt_A 529 EYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRL 605 (861)
T ss_dssp HHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHH
T ss_pred HHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHH
Confidence 544332 2222 2366777765532 1234566788888888763221 11112 2467777888
Q ss_pred hcCCCH-HHHHHHHHHHHHhhcCChH-hHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 647 LDTGEL-IEQEQAVSCLFLLCNGNEK-CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 647 L~~~s~-~~~e~Av~~L~~Lc~~~~~-~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+...+. .+++.++.++..++..... ....+ ..+++.|+..+.+.+..++..|..++..+.+.
T Consensus 606 l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 887766 7899999988888753222 22211 22678888777777888999999888766654
No 122
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.95 E-value=0.00026 Score=82.90 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=167.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
......+..+.+. +.+.|+-+--.+..+++.+++... -++..|.+-|.+ .++.++..|+.+|.++.. +
T Consensus 70 ~~~~~vik~~~s~-~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~----~n~~vr~lAL~~L~~i~~--~ 137 (618)
T 1w63_A 70 FGQLECLKLIASQ-KFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNH----STQFVQGLALCTLGCMGS--S 137 (618)
T ss_dssp GGHHHHHHHHHSS-SHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSC----SSSHHHHHHHHHHHHHCC--H
T ss_pred chHHHHHHHHcCC-chHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCC----CCHhHHHHHHHHHHhcCC--H
Confidence 3455566666666 888888888888888887665322 124456666665 789999999999999952 2
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.+ ....++.+...|.+.+. +..|+.++..+.... ...+ .+.++.|..+|.+. ++.++..|+.+|..++
T Consensus 138 ----~~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v--~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 138 ----EM-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELM--EMFLPATKNLLNEK-NHGVLHTSVVLLTEMC 207 (618)
T ss_dssp ----HH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGG--GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHC
T ss_pred ----HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHH--HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHH
Confidence 12 24678899999988776 567777777766532 1222 37888899999988 9999999999999998
Q ss_pred CCCCChHHHHHcCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhCCccc-HHH-------Hh------
Q 004074 584 TIPSNIPNLLSAGIISGLQSLAVP---------------GDPMWTEKSLAVLLNLAASAAG-KEE-------MN------ 634 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~---------------~~~~i~e~al~~L~nLa~~~e~-~~~-------i~------ 634 (775)
.......... ...++.|+.+|.+ .++-++-.++.+|..++..... ... +.
T Consensus 208 ~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 208 ERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS 286 (618)
T ss_dssp CSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCS
T ss_pred HhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 6432111112 3577777776542 2566666677777777653211 000 00
Q ss_pred ----------------hC-------CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc
Q 004074 635 ----------------ST-------PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN 691 (775)
Q Consensus 635 ----------------~~-------~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~ 691 (775)
.- ..++..|..+|.+.++.+|..|+.+|..++...+. +++ .....++..+.+
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGS
T ss_pred cchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHHccC
Confidence 00 01345555556666666666666666666543321 111 245567778888
Q ss_pred CChHHHHHHHHHHHHhHhc
Q 004074 692 GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 692 g~~~~k~kA~~LL~~L~~~ 710 (775)
.+..+|..|..+|..+...
T Consensus 362 ~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCS
T ss_pred CChhHHHHHHHHHHHHccc
Confidence 8999999999999877654
No 123
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.94 E-value=5.5e-06 Score=74.18 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=40.5
Q ss_pred CccccccccccccCc------------------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004074 281 EELRCPISLQLMYDP------------------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dP------------------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
++-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356799999999987 34699999999999999986 789999998753
No 124
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.3e-05 Score=65.70 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=40.8
Q ss_pred CCCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 279 PPEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
-.++..|+||++-..|||+++|||. ||..|+.+ ...||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3467899999999999999999999 99999984 4689999998864
No 125
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.93 E-value=2e-06 Score=72.88 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=40.7
Q ss_pred CCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.++..|+||++.+.|||+++|||. ||+.|+.+|. .||.|++++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 457899999999999999999999 9999999873 99999998864
No 126
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.93 E-value=1.8e-05 Score=99.86 Aligned_cols=270 Identities=11% Similarity=0.103 Sum_probs=179.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..+.+. +.++|..|...|....+.+...-..-.....++.|++.|.+ .+..++..|+.+|.+++....
T Consensus 6 ~~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d----~~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp HHHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCC
Confidence 3577889999888 99999999999998776531100001113567788888875 789999999999999974322
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcc----cccc--ccCchHHHHHhhcC-CCCHHHHHHHH
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK----PIIG--SSHAVPFLVELCKG-KTEHQCKLDAL 576 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k----~~I~--~~g~i~~LV~LL~~-~~~~~~k~~Al 576 (775)
. . .-..+++.|...|.+++. +..|+.+|..++..-... .... -...+|.|+..+.+ + +...+..|+
T Consensus 81 ~--~--~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al 155 (1230)
T 1u6g_C 81 E--Y--QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEAL 155 (1230)
T ss_dssp H--H--HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHH
T ss_pred H--H--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC-chHHHHHHH
Confidence 2 1 113467777887766554 445555665554321111 0111 14678999999984 6 899999999
Q ss_pred HHHHHhcCCCC--ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC-CHH
Q 004074 577 HALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-ELI 653 (775)
Q Consensus 577 ~aL~nLs~~~~--nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~-s~~ 653 (775)
.+|..++.... -... -...++.|+..|.+.+..++..|+.+|..++...... +. ...++.|+..|... ++.
T Consensus 156 ~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~--~~~l~~l~~~L~~~~~~~ 229 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF--VDLIEHLLSELSKNDSMS 229 (1230)
T ss_dssp HHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHHHhccCCchh
Confidence 99999984211 1111 1346777888888888899999999999998754322 22 35788888888643 235
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004074 654 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 654 ~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
.+..++.+|..++...+..... .-..+++.++..+.+.++.+|+.|...+..+.....
T Consensus 230 ~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 230 TTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp SCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 6667788888877532221100 113578888888888889999999988887776533
No 127
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.93 E-value=1.8e-06 Score=93.31 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=41.8
Q ss_pred CCCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 279 PPEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
+.+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3567999999999999999999999 999999998 689999998753
No 128
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.92 E-value=0.00024 Score=71.46 Aligned_cols=215 Identities=15% Similarity=0.113 Sum_probs=147.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~-nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
+.-++..|... +..++..|+..|..+.+.-+. .+..+. ...++.++.++.+ .|..+-..|+.+|..|-.+.+-
T Consensus 35 l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~----~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 35 LFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQ----ENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCS----TTHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhc----cchhHHHHHHHHHHHHHcCCCC
Confidence 33444555554 999999999999999998433 333333 4568999999988 8999999999999888544333
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004074 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
....+. -++..|..++.+++. ++.|+-.+..+.... -..+++..|..++.+. +.+++..|+.+|.|++.
T Consensus 109 ~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~------~~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 109 GSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE------DSKLVRTYINELVVSP-DLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC------CCHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGG
T ss_pred CHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc------chHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhc
Confidence 333322 245677888888876 577888888772222 2246778899999777 99999999999999997
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh--cCCCHHHHHHHHH
Q 004074 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL--DTGELIEQEQAVS 660 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL--~~~s~~~~e~Av~ 660 (775)
..++...+ .+++.-+-++|++.++.+++.|+.+|..+.+.+--...+-+- ..|...|+-| ..|.|..++.|=.
T Consensus 180 ~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 180 SSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL-LKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp GCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH-HHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred ccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH-HHHHHHHHHHHHhcCChhHHHHHHH
Confidence 55432211 234445667888889999999999999998864321111110 1233333333 3578887777643
No 129
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.91 E-value=8.2e-05 Score=82.42 Aligned_cols=232 Identities=7% Similarity=0.046 Sum_probs=147.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhhH-HhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 428 YQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEARV-FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 428 i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~~~nr~-~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+..++..|...+ +..+|..|+..+..++..-.++-. .....-.++.|...+.+ .+..++..++.+|..++....
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHH
Confidence 444555665542 589999999999987642111110 00011134555555544 788999999999999875332
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC------------Ccc------ccccc---cCchHHHHHh
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD------------DAK------PIIGS---SHAVPFLVEL 562 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~------------~~k------~~I~~---~g~i~~LV~L 562 (775)
..-...+..++++.++..+...+. +..|+..+..++... +.. ..+.. ...+|.|+..
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 211111112678888877776554 355666555554321 000 11111 2356777777
Q ss_pred hcCC------CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc--HHHHh
Q 004074 563 CKGK------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG--KEEMN 634 (775)
Q Consensus 563 L~~~------~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~--~~~i~ 634 (775)
|... .+...+..|+.+|..|+..-+. .++ ..+++.+...+.+.+...++.|+.+|..++..... -...+
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l 406 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7431 1346889999999999854331 222 35677777888888899999999999999974331 11112
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004074 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
...++.|+..|.+.++.+|..|+.+|..++..
T Consensus 407 --~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 407 --IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp --TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999864
No 130
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.90 E-value=0.00016 Score=86.87 Aligned_cols=267 Identities=10% Similarity=0.032 Sum_probs=169.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc-----
Q 004074 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR----- 506 (775)
Q Consensus 432 l~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~----- 506 (775)
...+.+. ++++|..|+..|..++...++.-........++.++..+.+ .+..++..|+.++..++.....
T Consensus 230 ~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~ 304 (861)
T 2bpt_A 230 CEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS----PNDKVASMTVEFWSTICEEEIDIAYEL 304 (861)
T ss_dssp HHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344455 89999999999999986543211111111455555556654 6889999999988888632100
Q ss_pred ---------hhHHH--HhhCcHHHHHHHhccCC---------hHHHHHHHHhcccccCCccccccccCchHHHHHhhcCC
Q 004074 507 ---------NKELM--LAAGVIPLLEKMISNSN---------SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 566 (775)
Q Consensus 507 ---------nk~~i--~~~G~i~~Lv~lL~s~~---------~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~ 566 (775)
.+..+ .-...+|.|+..|...+ .+..|..+|..++..-. ...+ ...++.+..++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~--~~l~~~l~~~l~~~ 381 (861)
T 2bpt_A 305 AQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHIL--EPVLEFVEQNITAD 381 (861)
T ss_dssp HHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGH--HHHHHHHHHHTTCS
T ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHH--HHHHHHHHHHcCCC
Confidence 00011 11457888888886421 13556777766665322 1111 34567777788887
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChHHHHH--cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccH---HHHhhCCCcHH
Q 004074 567 TEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK---EEMNSTPGLVS 641 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~---~~i~~~~g~I~ 641 (775)
+...++.|+.+|..++.... ...+.. ..+++.|+..+.+.++.++..++++|..++..-... .... ...++
T Consensus 382 -~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~ 457 (861)
T 2bpt_A 382 -NWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQ 457 (861)
T ss_dssp -SHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHH
T ss_pred -ChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHH
Confidence 89999999999999985433 112211 357888999888889999999999999998632110 1112 14677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCh----HhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHHHHhHhccC
Q 004074 642 GLATVLDTGELIEQEQAVSCLFLLCNGNE----KCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 642 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~----~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL~~L~~~~~ 712 (775)
.|+..+.+. +.++..|+.+|.+++..-. ....... ..+++.|+.++.+. ++.+|..|...|..+.....
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 788888765 8999999999999885310 1110011 23467777777643 37889888888887776543
No 131
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.86 E-value=8.2e-05 Score=75.98 Aligned_cols=180 Identities=18% Similarity=0.114 Sum_probs=128.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhc-hhccCCCHHHHHHHHHHHHHhhccCCchh
Q 004074 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE-SAVCERNSYAQEIGAMALFNLAVNNNRNK 508 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~~~nk 508 (775)
.++..+.+. +|..|..|+..|..++...+..-..- -..+++.|...|. + .+..++..|+.+|..|+..-. ..
T Consensus 19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~l~-~~ 91 (242)
T 2qk2_A 19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKD----SNVVLVAMAGKCLALLAKGLA-KR 91 (242)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHHG-GG
T ss_pred HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHHh-hh
Confidence 366677777 99999999999999997633211000 0234566666663 4 789999999999999974211 11
Q ss_pred HHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 004074 509 ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 586 (775)
Q Consensus 509 ~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~ 586 (775)
..-.-...+|.|+..+..... ++.|..+|..+..... + ...++.|...|++. ++.++..++..|..+....
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~--~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L--EAQQESIVESLSNK-NPSVKSETALFIARALTRT 164 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H--HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 111124488999999987765 4667777776654321 1 34688899999988 9999999999999965432
Q ss_pred C----ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004074 587 S----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 587 ~----nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
. .... +. .+++.|+.+|.+.+..++..|..+|..++.
T Consensus 165 ~~~~~~~~~-l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 165 QPTALNKKL-LK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CGGGCCHHH-HH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHH-HH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 2222 22 588999999999999999999999998875
No 132
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.84 E-value=0.00013 Score=77.59 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=127.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHH-hcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004074 557 PFLVELCKGKTEHQCKLDALHALYN-LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 557 ~~LV~LL~~~~~~~~k~~Al~aL~n-Ls~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
..+++-|.++ +.+.++.++.-|.. ++.+..-...+|..||+..|+.+...++...+..++.+|.+|-....|...++.
T Consensus 121 ~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 3444555666 77888889999988 667788899999999999999999888999999999999999999999999998
Q ss_pred CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC--------C--CHHHHHHhhh---cCChHHHHHHHH
Q 004074 636 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE--------G--VIPALVSISV---NGSTRGRDKAQR 702 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--------G--~i~~Lv~Ll~---~g~~~~k~kA~~ 702 (775)
+..+|..|+.++.+....+...|+.+|..+|..++.+...+.++ | -...|+.++. +++..++.+|..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 88899999999998889999999999999998775454444332 2 3778998887 789999999999
Q ss_pred HHHHhHh
Q 004074 703 LLMLFRE 709 (775)
Q Consensus 703 LL~~L~~ 709 (775)
|+..+-.
T Consensus 280 LIN~lL~ 286 (339)
T 3dad_A 280 LINKTLA 286 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9865543
No 133
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=2.9e-05 Score=65.83 Aligned_cols=56 Identities=16% Similarity=0.336 Sum_probs=45.2
Q ss_pred CCCccccccccccc--cCceecCCC-----CccchHHHHHHHhc-CCCCCCCCCCCCCCC-CCcc
Q 004074 279 PPEELRCPISLQLM--YDPVIIASG-----QTYERICIEKWLSD-GHSTCPKTQQKLPHL-CLTP 334 (775)
Q Consensus 279 ~p~~f~CPIs~~~m--~dPV~~~~G-----~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~-~l~p 334 (775)
..++..|+||++-+ .+|++++|+ |.|-+.||.+|+.. +..+||+|+.++... .+.|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 34677999999876 579999996 99999999999985 447999999998643 3444
No 134
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.70 E-value=0.0002 Score=73.03 Aligned_cols=183 Identities=9% Similarity=-0.043 Sum_probs=129.0
Q ss_pred HHHHHhccCCh--HHHHHHHHhccccc-CCcc-ccccccCchHHHHHhhc-CCCCHHHHHHHHHHHHHhcCCCCChHHHH
Q 004074 519 LLEKMISNSNS--HGAATALYLNLSFL-DDAK-PIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 519 ~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k-~~I~~~g~i~~LV~LL~-~~~~~~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
.+...+.+.+- +..|+..|..+... +... ..+ ...++.|..+|. +. +..++..|+.+|..|+..-...-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 35566665553 34466566555443 2211 111 356888889994 77 99999999999999995322211112
Q ss_pred HcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCChHh
Q 004074 594 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC-NGNEKC 672 (775)
Q Consensus 594 ~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc-~~~~~~ 672 (775)
-.-+++.|++.+.+.+..+++.|..+|.+++.... - ...++.|...|.+.++.+|+.++..|..+. ...++.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 23488999999999999999999999999987542 1 136788888899899999999999999965 433321
Q ss_pred -HHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004074 673 -CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 673 -~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
....+. .++|.|+.++.+...++|..|...|..+...-.
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 112222 478999999999999999999999888775543
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.69 E-value=0.00061 Score=68.55 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=155.4
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhccccc-CC
Q 004074 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DD 545 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~-~~ 545 (775)
+.+..|+.+|.. .|..++.+|+.+|-.+-..-+.....+.-...+|.++.++.+.+.+ -.|+.+|..|-.+ +-
T Consensus 33 ~~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 33 RALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred hHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 456788899977 8999999999999998542222233333466899999999888875 4577777654432 21
Q ss_pred ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004074 546 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 546 ~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
..... .-++.+|+.++.++ +.-....|+..|..|......+ +++..|.+|+.+.+..++..++.+|.|++.
T Consensus 109 ~~~~y--~Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 109 GSKTF--LKAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CHHHH--HHHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CHHHH--HHHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 22222 24578999999988 9999999999999994333222 356778888888999999999999999988
Q ss_pred CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHH------HH-Hhh-hcCChHHH
Q 004074 626 SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA------LV-SIS-VNGSTRGR 697 (775)
Q Consensus 626 ~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~------Lv-~Ll-~~g~~~~k 697 (775)
..+...-+ .+.+.-+-.+|.+.++..++.|+.+|..+.+..-. +.+++. .+ .|. ..|.|..+
T Consensus 180 ~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~ 249 (265)
T 3b2a_A 180 SSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL-------ENVKIELLKISRIVDGLVYREGAPIIR 249 (265)
T ss_dssp GCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC-------SCCHHHHHHHHHHHHHGGGCSSCHHHH
T ss_pred ccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc-------HhHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 54332211 13444566788889999999999999999876411 223333 33 344 56899999
Q ss_pred HHHHHHHHHhHh
Q 004074 698 DKAQRLLMLFRE 709 (775)
Q Consensus 698 ~kA~~LL~~L~~ 709 (775)
.+|..+-..+-.
T Consensus 250 ~ka~~v~~~le~ 261 (265)
T 3b2a_A 250 LKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988766643
No 136
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.64 E-value=0.0046 Score=72.28 Aligned_cols=249 Identities=12% Similarity=0.169 Sum_probs=160.9
Q ss_pred HHHHHH--hcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004074 430 DFLNVL--NEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 430 ~Ll~~L--~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
.+...| .+. ++-+|.+|+..+..+.+.+++. +-..++++.|..+|.+ .|+.++.+|+.+|..++..+.
T Consensus 150 ~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~~-- 219 (621)
T 2vgl_A 150 EIPKILVAGDT-MDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLND----QHLGVVTAATSLITTLAQKNP-- 219 (621)
T ss_dssp HHHHHHHCSSS-CHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHhCCCC-CHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCC----CCccHHHHHHHHHHHHHHhCh--
Confidence 444456 455 8999999999999999876642 2225899999999976 799999999999999975322
Q ss_pred hHHHHhhCcHHHHHHHhc----cC-------------Ch--HHHHHHHHhcccccCC--ccccccccCchHHHHHhhcCC
Q 004074 508 KELMLAAGVIPLLEKMIS----NS-------------NS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGK 566 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~----s~-------------~~--~~~AaaaL~~Ls~~~~--~k~~I~~~g~i~~LV~LL~~~ 566 (775)
..+ ...+|.++..|. .+ +. +.....+|..+...++ .+..+ .+.+..++..+.+.
T Consensus 220 -~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l--~~~L~~il~~~~~~ 294 (621)
T 2vgl_A 220 -EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL--TECLETILNKAQEP 294 (621)
T ss_dssp -HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHH--HHHHHHHHHHHHSC
T ss_pred -HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHH--HHHHHHHHHhhccC
Confidence 111 234555555443 22 22 2334555555543221 11111 12333343332111
Q ss_pred C--------CH--HHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC
Q 004074 567 T--------EH--QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST 636 (775)
Q Consensus 567 ~--------~~--~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~ 636 (775)
. +. .+.-.|+.++..+.. + ..++. .++..|..+|.+.++.++-.++..|..++........+.
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~---~-~~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~-- 367 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS---E-PNLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK-- 367 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC---C-HHHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC---c-HHHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--
Confidence 0 22 677788888888853 2 22222 367889999988889999999999999987653333332
Q ss_pred CCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004074 637 PGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 637 ~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
.....++..|. +.++.++..|+.+|..|+..+ +...+ +..|...+...+...++.+...+..+.
T Consensus 368 -~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 368 -THIETVINALKTERDVSVRQRAVDLLYAMCDRS--NAQQI-----VAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp -TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH--HHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh--hHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 35788888898 889999999999999999643 43333 445555556666676766665555444
No 137
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00034 Score=72.24 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=127.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC-c
Q 004074 430 DFLNVLNEGENLGQKCNIVEQIRL-LLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN-R 506 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~-Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~ 506 (775)
.|...+.+. +|..|.+|+.+|.. ++.+.++....-.+ ...+..|...|.. ..+..++..|+.+|..|+.+-. .
T Consensus 20 ~f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~---D~n~~v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 20 DFQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK---DANIQAVALAAQSVELICDKLKTP 95 (249)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHhcccc
Confidence 456667777 99999999999999 88654321100112 2345666666632 2688999999999999974211 1
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcccccc--ccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIG--SSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~--~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.-..-...-++|.|+..+..... +..+..+|..+...-+ ..... -...++.|+..|++. ++.++..++.+|..+
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-PLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNAS 173 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-TTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-ccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence 10001112378999999877654 3555556655544211 11111 135788999999998 999999999999999
Q ss_pred cCCCCCh-HHH---HHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004074 583 STIPSNI-PNL---LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 583 s~~~~nk-~~i---v~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
....... ..+ +...++|.|..++.+.+..+++.|..+|..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8544431 222 225799999999999999999999999988864
No 138
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.49 E-value=1.5e-05 Score=72.50 Aligned_cols=46 Identities=22% Similarity=0.510 Sum_probs=0.4
Q ss_pred ccccccccccccCcee------------------cCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004074 282 ELRCPISLQLMYDPVI------------------IASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~------------------~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+-.|+||++-|.+|.+ .+|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 3479999999998532 489999999999999986 779999998753
No 139
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.49 E-value=3.4e-05 Score=71.18 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=84.9
Q ss_pred hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHH
Q 004074 514 AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN 591 (775)
Q Consensus 514 ~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~ 591 (775)
...++.|+.+|++.+. +..|+.+|..+. ...++.|+.+|++. ++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------chHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-------
Confidence 4567778888876554 344555544332 12379999999988 99999999999999853
Q ss_pred HHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004074 592 LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 664 (775)
Q Consensus 592 iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~ 664 (775)
..+++.|+.+|.+.+..++..|+.+|.++.. ...++.|+.++.+.++.++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2368999999998999999999999998852 2468899999998899999999888754
No 140
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.42 E-value=1.5e-05 Score=73.71 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=91.0
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004074 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
...++.|+.+|+++ ++.++..|+++|.++.. ..++.|+.+|.+.+..++..|+.+|.++..
T Consensus 11 ~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE-NKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSS-CCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 46788999999988 88899999988876632 136899999999999999999999988753
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHH
Q 004074 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~ 705 (775)
...++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.++.+.++.+|..|...|.
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2468999999999999999999999998863 125788999888999999999988765
No 141
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.32 E-value=0.0025 Score=80.23 Aligned_cols=267 Identities=13% Similarity=0.114 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
+.+..++..+...+++.++..|+..|..++..... .+.. ...++.|+..|.+ .+..++..|+.+|..++..
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~---~l~~~~~~ll~~l~~~L~~----~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG---LLVNFHPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS---SCTTTHHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh---HHHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHh
Confidence 44555666776323889999999999998864221 1111 2345555555654 6789999999999999743
Q ss_pred CCchhHHHHhhCcHHHHHHHhccCC---hHHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHH
Q 004074 504 NNRNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 504 ~~~nk~~i~~~G~i~~Lv~lL~s~~---~~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
.. .. + -...++.|+..|.... .+..++.++..++..... .+.. ...++.++..+.+. ++.++..|+.+
T Consensus 206 ~~-~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~ 278 (1230)
T 1u6g_C 206 CG-NI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVD-DDELREYCIQA 278 (1230)
T ss_dssp C--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHH
T ss_pred cC-HH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 22 11 1 2346888888886543 234455555555432211 2222 57899999999887 88899999999
Q ss_pred HHHhcCCCC--ChHHHHHcCcHHHHHHhccCC-------------------------------------ChHHHHHHHHH
Q 004074 579 LYNLSTIPS--NIPNLLSAGIISGLQSLAVPG-------------------------------------DPMWTEKSLAV 619 (775)
Q Consensus 579 L~nLs~~~~--nk~~iv~aG~V~~Lv~LL~~~-------------------------------------~~~i~e~al~~ 619 (775)
+..++..-. .+.. + ..+++.++..+... ...++..|+.+
T Consensus 279 l~~l~~~~~~~~~~~-l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~ 356 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPH-V-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKC 356 (1230)
T ss_dssp HHHHHHCTTCCCHHH-H-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHH
T ss_pred HHHHHHHChHHHHHh-H-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHH
Confidence 998875332 2222 1 23556665544310 11346778888
Q ss_pred HHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh----------------HhHHHH--HHCC
Q 004074 620 LLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE----------------KCCQMV--LQEG 680 (775)
Q Consensus 620 L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~----------------~~~~~v--~~~G 680 (775)
|..++.... .-..+.. ..++.|+..+...++.++..++.+|..++.... .....+ .-..
T Consensus 357 l~~l~~~~~~~~~~~~~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (1230)
T 1u6g_C 357 LDAVVSTRHEMLPEFYK--TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN 434 (1230)
T ss_dssp HHHHHTTCCTTHHHHHT--TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTH
T ss_pred HHHHHHhchhHHHHHHH--HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhH
Confidence 888887432 2234443 578888888877788999999999888774210 001111 1123
Q ss_pred CHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 681 VIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 681 ~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+++.+...+.+.+.++|..+..+|..+...
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 566666678888999998888888777655
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0019 Score=66.57 Aligned_cols=186 Identities=10% Similarity=0.033 Sum_probs=127.5
Q ss_pred HHhccCCh--HHHHHHHHhc-ccccCCccccc---cc-cCchHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCCC---Ch-
Q 004074 522 KMISNSNS--HGAATALYLN-LSFLDDAKPII---GS-SHAVPFLVELC-KGKTEHQCKLDALHALYNLSTIPS---NI- 589 (775)
Q Consensus 522 ~lL~s~~~--~~~AaaaL~~-Ls~~~~~k~~I---~~-~g~i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~~~~---nk- 589 (775)
..+.+..- +..|+..|.. +... +...+ +. ...+..|.+.+ ++. +..++..|+.+|..|+..-. -.
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhcccccccH
Confidence 34455443 3445555655 5432 22222 22 35678888888 566 99999999999999984322 11
Q ss_pred HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhh-CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004074 590 PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS-TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 590 ~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~-~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
... .-++|.+++.+.+....+++.+..+|..++..-+. ..... -+.+++.|+..|.+..+.+|+.++.+|..++..
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 222 22789999999988889999999999988863211 00000 114677888889988999999999999998864
Q ss_pred ChH---hHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004074 669 NEK---CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 669 ~~~---~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
... .....+...++|.|..++.+.++.+|..|...|..+...-..
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 422 111222256899999999999999999999999887765443
No 143
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.11 E-value=0.01 Score=69.32 Aligned_cols=258 Identities=14% Similarity=0.135 Sum_probs=152.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.....+..+.+. +.+.|+-+--.+..+++.+++.- -..++.+..+..+.++.++-.|+.+|.++.. ++
T Consensus 75 ~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~~e~~---------~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e 142 (621)
T 2vgl_A 75 GHMEAVNLLSSN-RYTEKQIGYLFISVLVNSNSELI---------RLINNAIKNDLASRNPTFMGLALHCIANVGS--RE 142 (621)
T ss_dssp CHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCcHHH---------HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH
Confidence 455566666666 88888888888888888766432 2223333333334899999999999999942 21
Q ss_pred hhHHHHhhCcHHHHHHHh--ccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 507 NKELMLAAGVIPLLEKMI--SNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL--~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+ -...+|.+...| .+.+. +..|+-++..+.... ...+...+.++.|.++|.+. ++.++.+|+.+|..+
T Consensus 143 ----~-~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 143 ----M-AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTL 214 (621)
T ss_dssp ----H-HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHH
Confidence 2 235778888998 55554 466666666555432 22332258899999999887 999999999999999
Q ss_pred cCCCCC-----hH-------HHHHcCcH----------------HHHHHhcc----CCChHHHHHHHHHHHHHhC----C
Q 004074 583 STIPSN-----IP-------NLLSAGII----------------SGLQSLAV----PGDPMWTEKSLAVLLNLAA----S 626 (775)
Q Consensus 583 s~~~~n-----k~-------~iv~aG~V----------------~~Lv~LL~----~~~~~i~e~al~~L~nLa~----~ 626 (775)
+..... .. .++..|-. -.++++|. .+++...+....+|..+.. .
T Consensus 215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~ 294 (621)
T 2vgl_A 215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP 294 (621)
T ss_dssp HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 854321 01 11111100 01122221 1122322222222222110 0
Q ss_pred c-----ccH--------------------HHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCC
Q 004074 627 A-----AGK--------------------EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 681 (775)
Q Consensus 627 ~-----e~~--------------------~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 681 (775)
+ ..+ ..+.. .++..|..+|.+.++.+|-.|+..|..++...+. .. +++ ..
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~--~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~ 369 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV--RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-TH 369 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TT
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCcHHHHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HH
Confidence 0 000 01111 3456666777677778888888888888765421 11 122 24
Q ss_pred HHHHHHhhh-cCChHHHHHHHHHHHHhHh
Q 004074 682 IPALVSISV-NGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 682 i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~ 709 (775)
...++..+. +.+..+|.+|..+|..+..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 566667677 8888999999988876653
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.72 E-value=0.022 Score=60.64 Aligned_cols=175 Identities=11% Similarity=0.043 Sum_probs=124.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..|.++ +.+.++.++..|+.+..++.+.-..++..|++..|+++... .+...|..++.+|.+|.. +.
T Consensus 118 ~ra~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~----~~gN~q~Y~L~AL~~LM~-~v 191 (339)
T 3dad_A 118 VRVNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA----ADHNYQSYILRALGQLML-FV 191 (339)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT----SCHHHHHHHHHHHHHHTT-SH
T ss_pred HHHHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh----cChHHHHHHHHHHHHHHh-cc
Confidence 4677888889888 89999999999999555556666667777889999999987 688999999999999964 55
Q ss_pred chhHHHH-hhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccc-cccc--------cC--chHHHHHhhc---CCCC
Q 004074 506 RNKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKP-IIGS--------SH--AVPFLVELCK---GKTE 568 (775)
Q Consensus 506 ~nk~~i~-~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~-~I~~--------~g--~i~~LV~LL~---~~~~ 568 (775)
.....++ ....|..|..++.+... ...|..+|..+....+... .+.. .| -...|+.+|. .+ +
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D 270 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-D 270 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-C
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-C
Confidence 5555555 45689999999986543 3568888888776554222 2211 11 3779999997 55 8
Q ss_pred HHHHHHHHHHHHHhcCCCCC---hHHHH----HcCcHHHHHHhccC
Q 004074 569 HQCKLDALHALYNLSTIPSN---IPNLL----SAGIISGLQSLAVP 607 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~n---k~~iv----~aG~V~~Lv~LL~~ 607 (775)
.+.+.+|...|-.+-..... +..++ +.|.-..+...|..
T Consensus 271 ~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 271 PELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 99999988876665433222 33443 24544555556654
No 145
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.72 E-value=0.045 Score=66.59 Aligned_cols=248 Identities=15% Similarity=0.143 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhccChh---hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHH
Q 004074 445 CNIVEQIRLLLKDDEE---ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLE 521 (775)
Q Consensus 445 ~~Al~~L~~Lak~~~~---nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv 521 (775)
..|+..+..++..... .-..+ .+.+|.++..+.+ .+..++..|..++..+...- +...+ ..++|.|+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~d----k~~~v~~aa~~~~~~~~~~~--~~~a~--~~~~~~~~ 139 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGN----KDKEIQSVASETLISIVNAV--NPVAI--KALLPHLT 139 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHS--CGGGH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHhC--CHHHH--HHHHHHHH
Confidence 7788888888854321 11111 1456666666654 56778877766666554211 22222 45799999
Q ss_pred HHhccCChH---HHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcC
Q 004074 522 KMISNSNSH---GAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG 596 (775)
Q Consensus 522 ~lL~s~~~~---~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG 596 (775)
..|.++..+ ..|+.++..|+... ...++. ...||.+.+.+-+. .+++++.|..++-.+|..-+|+.. ..
T Consensus 140 ~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~---~~ 213 (986)
T 2iw3_A 140 NAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI---ER 213 (986)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT---GG
T ss_pred HHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch---hh
Confidence 999877653 44666666666533 445554 57888888888877 899999999999999987777543 45
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CChHhHH
Q 004074 597 IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN--GNEKCCQ 674 (775)
Q Consensus 597 ~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~--~~~~~~~ 674 (775)
.||.|++-+.+++. +.+++..|..-.-..+.-..-+. -.+|.|..-|...+..++..++-+.-|||+ .++....
T Consensus 214 ~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~ 289 (986)
T 2iw3_A 214 FIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIA 289 (986)
T ss_dssp GHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHh
Confidence 78999998876644 25555555443333332222111 235666666666788899999999999997 4544433
Q ss_pred HHHHCCCHHHHHHhhhc-CChHHHHHHHHHHHHhHhccCC
Q 004074 675 MVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 675 ~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
..+ ...+|.|-....+ ..|++|+.|.+.+..|.+....
T Consensus 290 ~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 290 PFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 332 3466666654443 6899999999999999877554
No 146
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.67 E-value=0.12 Score=62.47 Aligned_cols=222 Identities=12% Similarity=0.020 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHH
Q 004074 441 LGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL 520 (775)
Q Consensus 441 ~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~L 520 (775)
..++..|+..|....-++. +..+++.|..+|.. .+..+.+.|+.+|.-+-.+.. |.. ++..|
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~d----d~~~~~~~AalALGli~vGTg-n~~------ai~~L 512 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYN----DSATSGEAAALGMGLCMLGTG-KPE------AIHDM 512 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCC-CHH------HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccC-CHH------HHHHH
Confidence 4566677777776543321 12356778888876 455556667667665533222 222 34556
Q ss_pred HHHhccC-Ch--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCc
Q 004074 521 EKMISNS-NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGI 597 (775)
Q Consensus 521 v~lL~s~-~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~ 597 (775)
+..+... +. +..++-.|..+. ++....++.|++.|....++-++..|+.++.--.....|.. +
T Consensus 513 L~~~~e~~~e~vrR~aalgLGll~--------~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------a 578 (963)
T 4ady_A 513 FTYSQETQHGNITRGLAVGLALIN--------YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------A 578 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHT--------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------H
T ss_pred HHHHhccCcHHHHHHHHHHHHhhh--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------H
Confidence 6655433 22 223433343332 23356789999988754488888888888876666666643 4
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCChHhHHH
Q 004074 598 ISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQM 675 (775)
Q Consensus 598 V~~Lv~LL-~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~ 675 (775)
|+.|+..+ .+.+..++..|+..|+.++.... ..++.++.+| .++++.+|..|+.+|..+|.+++.
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---- 645 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---- 645 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----
Confidence 56666644 45567788888888887765432 3567777755 468999999999999999876531
Q ss_pred HHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 676 VLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 676 v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
..++..|..++.+.+..++..|...|-++-..
T Consensus 646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 11456677777788888888888777665433
No 147
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.60 E-value=0.014 Score=65.50 Aligned_cols=248 Identities=10% Similarity=0.072 Sum_probs=155.6
Q ss_pred CCchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hhHHhhccCchHHHHHHhchh-----c-cCCCHHHHHH
Q 004074 421 GNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESA-----V-CERNSYAQEI 492 (775)
Q Consensus 421 ~~~~~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~--nr~~i~~~G~I~~Lv~lL~s~-----~-~~~d~~~qe~ 492 (775)
+|-.. .+..|+..|-+. .|++|..|+..||.+.+.... .|..-......-.|+.+|.-+ + +.--..++|.
T Consensus 170 eWPfq-fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRET 247 (800)
T 3oc3_A 170 ENVLD-FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDA 247 (800)
T ss_dssp CSGGG-TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHH
T ss_pred CCHHH-HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHH
Confidence 56656 788889999998 999999999999999875431 111001112233344433211 0 0112468888
Q ss_pred HHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChHHH---HHHHHhcccccCCccccccc-cCchHHHHHhhcCCCC
Q 004074 493 GAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA---ATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTE 568 (775)
Q Consensus 493 A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~---AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~ 568 (775)
++.+|..+ .+-+.. ..++..|+..+... .++. ++-.|.++ +..+.. .++++.++.-|.+. +
T Consensus 248 aAQtLGaL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-D 312 (800)
T 3oc3_A 248 AAYLLSRI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-D 312 (800)
T ss_dssp HHHHHHHH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-S
T ss_pred HHHHHHHH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-c
Confidence 88888887 543332 34454555433333 3444 33334445 233322 57888999999988 9
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccC-CC-hHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHH
Q 004074 569 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GD-PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV 646 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~-~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~l 646 (775)
.+++..|+.+|..++ .++.... ++..|-+.|.+ ++ ..-+...+..|+.|++.+.. ....+..||.|...
T Consensus 313 DDVRAVAAetLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PF 383 (800)
T 3oc3_A 313 EDIKLLSAELLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPC 383 (800)
T ss_dssp HHHHHHHHHHHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGG
T ss_pred cHHHHHHHHHhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhh
Confidence 999999999999998 2222222 22223333322 21 22235677788888876642 12234789999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHH-HhhhcCChHHHHHHHHHHH
Q 004074 647 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV-SISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv-~Ll~~g~~~~k~kA~~LL~ 705 (775)
+++.-..+|..++.+|..+. .. .++..+. .++...++.+++.+..+.+
T Consensus 384 LRHtITSVR~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 384 FTSPVPEVRTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTCSSHHHHHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999999998877 11 1333333 6778888999998888876
No 148
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.59 E-value=0.0049 Score=51.08 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=38.4
Q ss_pred CccccccccccccCceec-CCCCccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004074 281 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~ 328 (775)
..-.|+||.+++..=+.- .|||.|=..||.+||.. +..+||.|+++..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345899999998743332 68999999999999975 3489999998765
No 149
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.19 Score=48.82 Aligned_cols=211 Identities=14% Similarity=0.143 Sum_probs=141.2
Q ss_pred cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccC
Q 004074 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD 544 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~ 544 (775)
..++..++.+|.. +-..+|.+|+..|.+++..-++-.. -.+..|+-+|+.... ...-+.++..++...
T Consensus 31 ~~~l~~lI~~LDD----DlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 31 ESVLKKLIELLDD----DLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp HHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcc----HHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC
Confidence 4567889999976 5578999999999999743332222 234455556554443 344455555554321
Q ss_pred CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 004074 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL 623 (775)
..+. .+.+|.|..-.+-| ++.++.+-..+|-.++. +++- -.+++.-+..++.+.+.. .=+.+|.-+
T Consensus 102 ---Pe~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l-----~~~v~rdi~smltskd~~---Dkl~aLnFi 168 (253)
T 2db0_A 102 ---PELV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPML-----MASIVRDFMSMLSSKNRE---DKLTALNFI 168 (253)
T ss_dssp ---HHHH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHTSCSSHH---HHHHHHHHH
T ss_pred ---HHHH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCCChH---HHHHHHHHH
Confidence 1111 35677777777788 99999999999998874 2221 234566677888877743 444555555
Q ss_pred hCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHH
Q 004074 624 AASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 703 (775)
Q Consensus 624 a~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~L 703 (775)
..-.++.-..+. -.+|.|..+|...+.-++..|+.+|.+++.-++..+..+ ..-+.=+.+.++-++.+...-
T Consensus 169 ~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 169 EAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp HTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHH
T ss_pred HHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHH
Confidence 555555555554 579999999999999999999999999999887755543 223344556677777777666
Q ss_pred HHHhH
Q 004074 704 LMLFR 708 (775)
Q Consensus 704 L~~L~ 708 (775)
|..+.
T Consensus 241 L~rl~ 245 (253)
T 2db0_A 241 ISRLL 245 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 150
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.39 E-value=0.52 Score=45.77 Aligned_cols=211 Identities=15% Similarity=0.154 Sum_probs=141.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHH-HHHHHHHHHHhhccC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYA-QEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~-qe~A~~aL~nLs~~~ 504 (775)
+.+..++..|... -|-+|..|+..|-.+++.-++....+ +..|+-+|+.. +.... |+. +.++..++.-+
T Consensus 32 ~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks---EaIpltqeI-a~a~G~la~i~ 101 (253)
T 2db0_A 32 SVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS---EAIPLTQEI-AKAFGQMAKEK 101 (253)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC---CSHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc---ccCchHHHH-HHHHhHHHHhC
Confidence 3444566666665 79999999999999999877654443 34566666651 44444 544 56777776432
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004074 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
++- + .+++|.|..=+.-|+. +.+-..+|..++... -..+ .+++.-+..||.+. +. .+-+.+|.-+
T Consensus 102 Pe~----v-~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~--~~v~rdi~smltsk-d~---~Dkl~aLnFi 168 (253)
T 2db0_A 102 PEL----V-KSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLM--ASIVRDFMSMLSSK-NR---EDKLTALNFI 168 (253)
T ss_dssp HHH----H-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHH--HHHHHHHHHHTSCS-SH---HHHHHHHHHH
T ss_pred HHH----H-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHH--HHHHHHHHHHhcCC-Ch---HHHHHHHHHH
Confidence 221 1 2456666666666776 355666666554321 1122 35677888999887 74 4445556666
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004074 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+.-.+|..+-+.- .+|.|..||.+++..++..|+.+|.+||.....-.. .|...++-+...|..++......|
T Consensus 169 ~alGen~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 169 EAMGENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp HTCCTTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred HHHhccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6667787777654 889999999999999999999999999986544322 344456667788888888877777
Q ss_pred HHhh
Q 004074 663 FLLC 666 (775)
Q Consensus 663 ~~Lc 666 (775)
..|.
T Consensus 242 ~rl~ 245 (253)
T 2db0_A 242 SRLL 245 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.36 E-value=0.031 Score=62.23 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHhhccCCchhHHHHhhC--cHHHHHHHhccC----C------------h---HHHHHHHHhcccccC
Q 004074 486 NSYAQEIGAMALFNLAVNNNRNKELMLAAG--VIPLLEKMISNS----N------------S---HGAATALYLNLSFLD 544 (775)
Q Consensus 486 d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G--~i~~Lv~lL~s~----~------------~---~~~AaaaL~~Ls~~~ 544 (775)
+...|..|+.+|-.|.. .++.|..+.+.+ .+|+++.++... . . .=.++-++..|+..+
T Consensus 181 ~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~ 259 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP 259 (480)
T ss_dssp CHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH
T ss_pred CCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH
Confidence 45567788888888864 677888887543 578887665421 1 1 122555566677776
Q ss_pred CccccccccCch--HHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHH----HH-HcCcHHHHHHhccC---CChHHH
Q 004074 545 DAKPIIGSSHAV--PFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPN----LL-SAGIISGLQSLAVP---GDPMWT 613 (775)
Q Consensus 545 ~~k~~I~~~g~i--~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~----iv-~aG~V~~Lv~LL~~---~~~~i~ 613 (775)
+....+...+.+ +.|+.+++......+.+-++.+|.||.... ++... ++ ..++ +++++.|.. .+..+.
T Consensus 260 ~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ 338 (480)
T 1ho8_A 260 VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELR 338 (480)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHH
Confidence 655555545533 778888887657899999999999998654 22222 22 3444 556665543 355544
Q ss_pred HHHHHHHHHH-------hC---------------CcccHH---------HHhh-CCCcHHHHHHHhcC----------CC
Q 004074 614 EKSLAVLLNL-------AA---------------SAAGKE---------EMNS-TPGLVSGLATVLDT----------GE 651 (775)
Q Consensus 614 e~al~~L~nL-------a~---------------~~e~~~---------~i~~-~~g~I~~Lv~lL~~----------~s 651 (775)
+..-.+...| ++ ++-.+. .+.+ ....+..|+++|.+ .+
T Consensus 339 edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d 418 (480)
T 1ho8_A 339 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 418 (480)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCC
Confidence 4333322222 11 111111 1211 12457889999973 24
Q ss_pred HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004074 652 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+.+..-|+.=+..+++..|..+..+-+.|+=..++.|+.+.++++|..|...++.+-.
T Consensus 419 ~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 419 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5566666666777887777788888888987788899999999999999988876543
No 152
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.28 E-value=0.0039 Score=49.50 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=40.0
Q ss_pred CccccccccccccCceecCCCC-----ccchHHHHHHHh-cCCCCCCCCCCCCC
Q 004074 281 EELRCPISLQLMYDPVIIASGQ-----TYERICIEKWLS-DGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~-----ty~r~~I~~w~~-~~~~~CP~t~~~l~ 328 (775)
+.-.|.||++-..+|.+.||.. -|=+.|+++|+. .++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3557999998888998888643 788999999997 46789999998875
No 153
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.11 E-value=0.019 Score=62.25 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=101.1
Q ss_pred hHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004074 426 ERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~-~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+...+. .|.+. ++-++..|+-....+...+++. ++ ++++.+-+++.+ .++.++.+|+.+|..+.. +
T Consensus 138 ~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe~----v~-~~~~~l~~ll~d----~n~~V~~~Al~lL~ei~~-~ 206 (355)
T 3tjz_B 138 QAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFDV----VK-RWVNEAQEAASS----DNIMVQYHALGLLYHVRK-N 206 (355)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHHH----HH-TTHHHHHHHTTC----SSHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHhcC----CCccHHHHHHHHHHHHHh-h
Confidence 44444444 55565 8999999999999999887764 22 688889899987 799999999999999963 2
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh-HHHHH-HHHh---cccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004074 505 NRNKELMLAAGVIPLLEKMISNSNS-HGAAT-ALYL---NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~-~~~Aa-aaL~---~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
+ +. ++..|+..|..+.. ...+. .+|. .+...++. -.....++.|..+|++. ++.+.-.|+++|
T Consensus 207 d--~~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I 274 (355)
T 3tjz_B 207 D--RL------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNK-HEMVVYEAASAI 274 (355)
T ss_dssp C--HH------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCS-SHHHHHHHHHHH
T ss_pred c--hH------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 2 22 34555666655421 12222 2222 22222200 01134567777888887 999999999999
Q ss_pred HHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004074 580 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
..|...+.. +...++..|..+|.+.++.++-.|+..|..++....+. +. .+-..+..++.+++..+...|+
T Consensus 275 ~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~---v~--~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 275 VNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA---VT--ACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp TC---------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred HhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH---HH--HHHHHHHHHccCCcHhHHHHHH
Confidence 998653221 22345677777888888888899999988887754322 21 3456677888888888888888
Q ss_pred HHHHHh
Q 004074 660 SCLFLL 665 (775)
Q Consensus 660 ~~L~~L 665 (775)
.+|+.-
T Consensus 346 ttllkt 351 (355)
T 3tjz_B 346 TTLLKT 351 (355)
T ss_dssp ------
T ss_pred HHhhhc
Confidence 888764
No 154
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.10 E-value=0.039 Score=61.47 Aligned_cols=233 Identities=13% Similarity=0.107 Sum_probs=147.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhcc-C-chHHHHHHhchhccC-------------CCHHHHHHHH
Q 004074 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGAN-G-FVVALLRFLESAVCE-------------RNSYAQEIGA 494 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~-G-~I~~Lv~lL~s~~~~-------------~d~~~qe~A~ 494 (775)
.++..|....+.+.+.-++..|..++.. ++.|..+.+. | .+++++.++....++ ....+|.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 3555666532456677788889888876 6788887764 3 578888777643211 1356789999
Q ss_pred HHHHHhhccCCchhHHHHhhCcH--HHHHHHhccCCh---HHHHHHHHhcccccC--Cccc----cccccCchHHHHHhh
Q 004074 495 MALFNLAVNNNRNKELMLAAGVI--PLLEKMISNSNS---HGAATALYLNLSFLD--DAKP----IIGSSHAVPFLVELC 563 (775)
Q Consensus 495 ~aL~nLs~~~~~nk~~i~~~G~i--~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~--~~k~----~I~~~g~i~~LV~LL 563 (775)
-++.-|+. ++.....+...+.. +.|+.+++.... ...+.+++.||.... +.+. .+...++ ++++..|
T Consensus 250 l~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99999976 44455556666643 677777776542 245888999987654 1122 2222344 5566666
Q ss_pred cCC--CCHHHHHHHHHHHHH-------hcCCC------------------------CChHHHHH--cCcHHHHHHhccC-
Q 004074 564 KGK--TEHQCKLDALHALYN-------LSTIP------------------------SNIPNLLS--AGIISGLQSLAVP- 607 (775)
Q Consensus 564 ~~~--~~~~~k~~Al~aL~n-------Ls~~~------------------------~nk~~iv~--aG~V~~Lv~LL~~- 607 (775)
... .|++..++--...-. +++.+ +|..++-+ -.++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 543 355555443222111 22111 12223332 1266788888863
Q ss_pred ---------CChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004074 608 ---------GDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 608 ---------~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
.++.+..-|+.=|..++. .|+||..+-. -|+=..++++|.+.+++++.+|+.++..+-
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 246666667777777777 5777776655 488889999999999999999999887654
No 155
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.01 E-value=0.035 Score=60.03 Aligned_cols=246 Identities=13% Similarity=0.052 Sum_probs=142.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004074 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+...+..+.+. +.+.|+-.--.+..+++..++. | =++..|.+=+.+ .++-++-.|+.+|.++.. ++-
T Consensus 70 f~~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~----~N~~iR~lALRtL~~I~~--~~m 136 (355)
T 3tjz_B 70 FFAMTKLFQSN-DPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTG----KEDSYRGPAVRALCQITD--STM 136 (355)
T ss_dssp HHHHHGGGGCC-CHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHS----SCHHHHHHHHHHHHHHCC--TTT
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCC----CcHhHHHHHHHHHhcCCC--HHH
Confidence 33445566666 8888888888888888764332 1 223455555555 789999999999999953 322
Q ss_pred hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004074 508 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
- ....+.+...|.+.++ +..|+-+...|. +.+...+ .+++..+-+++.+. ++.+.-+|+.+|+.+...
T Consensus 137 ~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~--~~~pe~v--~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 137 L-----QAIERYMKQAIVDKVPSVSSSALVSSLHLL--KCSFDVV--KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp H-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHT--TTCHHHH--HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTT
T ss_pred H-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--ccCHHHH--HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhh
Confidence 1 2356677778877776 344444444443 2333344 37899999999988 999999999999999865
Q ss_pred CCChHHHHHcCcHHHHHHhccCC---ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004074 586 PSNIPNLLSAGIISGLQSLAVPG---DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~---~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+ +. ++..|+.-+..+ ++-.+-..+.++..++...+.. .....+..|...|++.++.+.=.|+.++
T Consensus 207 d--~~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 207 D--RL------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp C--HH------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHH
T ss_pred c--hH------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3 21 455566655443 2333333344443333322111 1135566777778889999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004074 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
..+...+.. . ...++..|..++.+.++.+|--|...|..+....++
T Consensus 275 ~~l~~~~~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 275 VNLPGCSAK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp TC----------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred HhccCCCHH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 887653211 1 134567777888889999998888777666655443
No 156
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.071 Score=55.28 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=114.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhh--HH-hhccC-chHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC-
Q 004074 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEAR--VF-TGANG-FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN- 505 (775)
Q Consensus 431 Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr--~~-i~~~G-~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~- 505 (775)
|-.+|.+. +|..|.+|+.+|..+........ .. +..-+ .++.+-..+.+ .|..++..|+.+|..++....
T Consensus 14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D----sN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD----SNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC----SSHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhh
Confidence 45678887 99999999999998876543211 11 11122 34445566665 799999999999888753211
Q ss_pred ---ch-hHHHHhhCcHHHHHHH-hccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHH
Q 004074 506 ---RN-KELMLAAGVIPLLEKM-ISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 506 ---~n-k~~i~~~G~i~~Lv~l-L~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
.+ .....-..++|.|+.- |.++.. +..|..++..+....... ..+++.++..+.+. ++.++..++..
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~K-npkv~~~~l~~ 162 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKK-LPKLIAAAANC 162 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCS-CHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhcc-CHHHHHHHHHH
Confidence 11 1112234567777764 555543 355666665444322111 12356777778887 99999999999
Q ss_pred HHHhcCC--CC--ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004074 579 LYNLSTI--PS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 579 L~nLs~~--~~--nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
|..+... .. +-...+. .+++.+..+|.+.+..+++.|..++..+-.
T Consensus 163 l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9987532 11 2222222 255567778889999999999999988765
No 157
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.56 E-value=0.54 Score=56.81 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc-CC---CHHHHHHHHHHHHHhhccCCchhHHHHhhC
Q 004074 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-ER---NSYAQEIGAMALFNLAVNNNRNKELMLAAG 515 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~-~~---d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G 515 (775)
+..++..|+..|..+..+... .++..|...|.+... .. .+.++..|+..|.-...+.. + ..
T Consensus 408 ~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------ee 472 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IE 472 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HH
T ss_pred cHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HH
Confidence 678899999999988766431 156778888876310 01 25677777777776543222 1 13
Q ss_pred cHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHH
Q 004074 516 VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
+++.|..+|...+.. +.|+-+|..+-.... +..++..|+..+.+..+..+++.++.+|..+....+
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~------ 540 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ------ 540 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh------
Confidence 567788888766542 334444432212111 124677787776544378899999999988865433
Q ss_pred HcCcHHHHHHhcc-CCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChH
Q 004074 594 SAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEK 671 (775)
Q Consensus 594 ~aG~V~~Lv~LL~-~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~ 671 (775)
..++.+++.|. +.++-++..++.++..-.....+. ..|..|++.+. +.++.+|..|+..|..+..+++
T Consensus 541 --e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 541 --ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp --GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 36777788664 456666666666665443333222 23555666554 5678899999999988877653
Q ss_pred hHHHHHHCCCHHHHHH-hhhcCChHHHHHHHHHHHHhH
Q 004074 672 CCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 672 ~~~~v~~~G~i~~Lv~-Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..++.++. |+..+++.+|..|...|-++.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 24666664 566788888888888777665
No 158
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.20 E-value=0.92 Score=55.24 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=139.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004074 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.++..+..- ...+|..|-.++..+.+.-+.+ .+ ..++|.|+..|.+. ..-..+..|+.+|-.|+.. . ..
T Consensus 99 ~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~---~kw~~k~~~l~~~~~~~~~-~--~~ 167 (986)
T 2iw3_A 99 AICTNAGNK-DKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVET---NKWQEKIAILAAFSAMVDA-A--KD 167 (986)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH-S--HH
T ss_pred HHHHHhcCC-chHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHH-h--HH
Confidence 344444433 6788888888888887653221 11 56788999988762 3578889999999999742 2 33
Q ss_pred HHHh--hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004074 510 LMLA--AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 510 ~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
.+.. ...||.+...+..... ...|..++..++..-+|+... ..||.||+.+.++ +. ...++..|..-..-
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~---~~~~~~~~~~~~p-~~--~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE---RFIPSLIQCIADP-TE--VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG---GGHHHHHHHHHCT-TH--HHHHHHHHTTCCCC
T ss_pred HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh---hhHHHHHHHhcCh-hh--hHHHHHHhhcCeeE
Confidence 3332 4678887777765443 355667776666555555543 6789999999877 43 33344444444333
Q ss_pred CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc---HHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHH
Q 004074 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG---KEEMNSTPGLVSGLATVLDT-GELIEQEQAVSC 661 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~---~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~ 661 (775)
.+.-..... =.+|.|.+-|......++.+++-++.|||.-=+. ...++ +..+|.|-+.... ..|++|+.|-.+
T Consensus 242 ~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a 318 (986)
T 2iw3_A 242 AEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRA 318 (986)
T ss_dssp SCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred eeecchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHH
Confidence 333222221 1455666666777888899999999999984333 33344 3566666666654 689999988888
Q ss_pred HHHhh
Q 004074 662 LFLLC 666 (775)
Q Consensus 662 L~~Lc 666 (775)
+-.|-
T Consensus 319 ~~~l~ 323 (986)
T 2iw3_A 319 LKTLR 323 (986)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87773
No 159
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.03 E-value=0.004 Score=65.94 Aligned_cols=49 Identities=31% Similarity=0.670 Sum_probs=39.0
Q ss_pred CccccccccccccC----cee----cCCCCccchHHHHHHHhcCC----------CCCCCCCCCCCC
Q 004074 281 EELRCPISLQLMYD----PVI----IASGQTYERICIEKWLSDGH----------STCPKTQQKLPH 329 (775)
Q Consensus 281 ~~f~CPIs~~~m~d----PV~----~~~G~ty~r~~I~~w~~~~~----------~~CP~t~~~l~~ 329 (775)
...-|+||...+.+ |-. ..|||.|-..||.+||.... .+||.|+++++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34579999999988 533 36999999999999997421 469999998753
No 160
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.72 E-value=0.021 Score=49.53 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=38.1
Q ss_pred ccccccccccCce-ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 284 RCPISLQLMYDPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 284 ~CPIs~~~m~dPV-~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.||+|.-....=. ++||+|.||-.|+..|...+..+||.|++++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4777766555544 679999999999999998889999999988764
No 161
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.024 Score=61.00 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=52.5
Q ss_pred ccccccccccccCceec-CCCCc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004074 282 ELRCPISLQLMYDPVII-ASGQT--YERICIEKWLS-DGHSTCPKTQQKLPHLCLTPNYCVKGLIA 343 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~t--y~r~~I~~w~~-~~~~~CP~t~~~l~~~~l~pn~~l~~~i~ 343 (775)
.+.|||+...|..||-. .|.|. ||...+..... .+...||+|++.+....|+...-+...+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 68999999999999965 79987 99988887654 56788999999999899998877776664
No 162
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.16 E-value=1.7 Score=44.26 Aligned_cols=231 Identities=13% Similarity=0.108 Sum_probs=146.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhh-ccCchHHHHHHhchhccC---C--C---HHHHHHHHHH
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVCE---R--N---SYAQEIGAMA 496 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~-~~G~I~~Lv~lL~s~~~~---~--d---~~~qe~A~~a 496 (775)
+.+..++..|..+ +.|..|+.+|..--..-++.-..+= ..|.|..|++=+-+-... . . ..-..+|+..
T Consensus 3 ~~i~qli~~L~~p---~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaL 79 (268)
T 2fv2_A 3 EKIYQWINELSSP---ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALAL 79 (268)
T ss_dssp HHHHHHHHHTSST---TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc---hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHH
Confidence 4566777777655 4566776666543222233222333 368888887644331110 0 1 1122556666
Q ss_pred HHHhhccCCchhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCcc--ccccccCchHHHHHhhcCCC
Q 004074 497 LFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAK--PIIGSSHAVPFLVELCKGKT 567 (775)
Q Consensus 497 L~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~k--~~I~~~g~i~~LV~LL~~~~ 567 (775)
|--+|. +++-|..++++...--|-.+|+..+. +-.+.+++..|...++.- ..+.+.+.||..++.+..|
T Consensus 80 lQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G- 157 (268)
T 2fv2_A 80 LQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG- 157 (268)
T ss_dssp HHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-
T ss_pred HHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-
Confidence 666775 78899999999877777777876653 234777887777654421 1333578999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCh-------HHHHH-cCcHHHHHH-hccCCChHHHHHHHHHHHHHhCCcccHHHHhhC--
Q 004074 568 EHQCKLDALHALYNLSTIPSNI-------PNLLS-AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-- 636 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk-------~~iv~-aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-- 636 (775)
+.-.|..|.-++..+-.++..- .++-. +.++..+|. +..++++.+...++..-..|+.++.++.++...
T Consensus 158 selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP 237 (268)
T 2fv2_A 158 SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLP 237 (268)
T ss_dssp CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCc
Confidence 9999999999888876554422 22222 235555565 556788999999999999999999999887541
Q ss_pred ----CCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004074 637 ----PGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 637 ----~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
.|.... ++ .+++..+..-...|.|+
T Consensus 238 ~~Lrd~tf~~---~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 238 DQLKDTTFAQ---VL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp GGGTSSTTHH---HH-TSCHHHHHHHHHHHHHS
T ss_pred HHhhChHHHH---HH-hcCHHHHHHHHHHHHhc
Confidence 122222 22 35677777655555554
No 163
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.13 E-value=0.065 Score=57.43 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=53.7
Q ss_pred CccccccccccccCceec-CCCCc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 004074 281 EELRCPISLQLMYDPVII-ASGQT--YERICIEKWLS-DGHSTCPKTQQKLPHLCLTPNYCVKGLIAS 344 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~t--y~r~~I~~w~~-~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~ 344 (775)
-.+.|||+...|..||-. .|.|. ||...+..... .+...||+|++.+...+|.-..-+...+.+
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 468999999999999975 79887 99998888765 567889999999988889888777777653
No 164
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.75 E-value=1 Score=55.05 Aligned_cols=255 Identities=11% Similarity=0.104 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHH----hchh--ccCCCHHHHHHHHHHHHHhhccCCchhHHHHhh
Q 004074 441 LGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRF----LESA--VCERNSYAQEIGAMALFNLAVNNNRNKELMLAA 514 (775)
Q Consensus 441 ~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~l----L~s~--~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~ 514 (775)
...+..|...|..++..-. .. .++.++.+ |... ....+...++.|+.++..++......... ...
T Consensus 375 ~s~R~aa~~~L~~l~~~~~---~~-----v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~ 445 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE---VL-----VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSS 445 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH---HH-----HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCC
T ss_pred cCcHHHHHHHHHHHHHHcc---hh-----HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-ccc
Confidence 4567777778888876532 11 23334443 3310 01256778899999999997421100000 000
Q ss_pred -----CcHHHH----HHHhccC---Ch--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHH
Q 004074 515 -----GVIPLL----EKMISNS---NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 515 -----G~i~~L----v~lL~s~---~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
...+.+ +..|.+. +. +..|++++..++..- .+.. -..+++.++..|.+. +..++..|+.||.
T Consensus 446 ~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~ 521 (960)
T 1wa5_C 446 TNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTD-EYVVYTYAAITIE 521 (960)
T ss_dssp BCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHH
Confidence 222322 2334444 33 567888888777542 1111 145788899988887 8999999999999
Q ss_pred HhcCCCC---------ChHHHHH--cCcHHHHHHhccCCC---hH--HHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHH
Q 004074 581 NLSTIPS---------NIPNLLS--AGIISGLQSLAVPGD---PM--WTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGL 643 (775)
Q Consensus 581 nLs~~~~---------nk~~iv~--aG~V~~Lv~LL~~~~---~~--i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~L 643 (775)
+++...+ .+..+.. ..+++.|+.++.... .. ..+.++.+|..++..- +.-..+.. ..++.|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L 599 (960)
T 1wa5_C 522 KILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQF 599 (960)
T ss_dssp HHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHH
T ss_pred HHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHH
Confidence 9986422 2333321 335555666665531 11 2245556665554321 11111111 234444
Q ss_pred HHHhc----C-CCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004074 644 ATVLD----T-GELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 644 v~lL~----~-~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
+..+. + .++.....++.+|..++.. +++.. .-....++|.+..++.+......+.+..++..+....
T Consensus 600 ~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 600 IEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 44443 2 3566777788888888765 33332 2334457788888888777778888888888777665
No 165
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.70 E-value=0.059 Score=47.07 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.6
Q ss_pred Cccccccccc-cccCcee--cCCCCccchHHHHHHHh
Q 004074 281 EELRCPISLQ-LMYDPVI--IASGQTYERICIEKWLS 314 (775)
Q Consensus 281 ~~f~CPIs~~-~m~dPV~--~~~G~ty~r~~I~~w~~ 314 (775)
+++.|+||.+ .+.+||. +.|||+||+.|++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4689999996 4899999 89999999999999443
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.91 E-value=0.8 Score=47.16 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=101.2
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC----ChHH--HHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhCC
Q 004074 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS----NIPN--LLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~----nk~~--iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~ 626 (775)
..++.+-+.+.+. |..+...|+.+|..++.... .+.. ..-..+++.|++ .|.+....++..++.+|..++..
T Consensus 55 ~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 55 RDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp SCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 3455666778777 99999999999998875322 2222 223567888887 57888888889999888877653
Q ss_pred cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHh--HHHHHHCCCHHHHHHhhhcCChHHHHHHHHH
Q 004074 627 AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKC--CQMVLQEGVIPALVSISVNGSTRGRDKAQRL 703 (775)
Q Consensus 627 ~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~--~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~L 703 (775)
..... .++..++..+.+.+|.++..++..|..+... .... ....+ ..+++.|..++.+.++.+|..|..+
T Consensus 134 ~~~~~------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l 206 (278)
T 4ffb_C 134 DTSIT------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNL 206 (278)
T ss_dssp SSSSH------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHH
T ss_pred cCcHH------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 32211 1234555667788999999999988876532 1111 11111 1245566778899999999999998
Q ss_pred HHHhHhccC
Q 004074 704 LMLFREQRQ 712 (775)
Q Consensus 704 L~~L~~~~~ 712 (775)
+--+-.+-.
T Consensus 207 ~~~ly~~~G 215 (278)
T 4ffb_C 207 IVEIYKVTG 215 (278)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhC
Confidence 877765543
No 167
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.37 E-value=0.81 Score=48.26 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=98.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH--cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc---ccHHH
Q 004074 558 FLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA---AGKEE 632 (775)
Q Consensus 558 ~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~---e~~~~ 632 (775)
.+...+.+..++..+..+++++.|+-.++..+..+.. .-+++.+...+.+.+..++..+..++.|++... ...+.
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 3444444333566789999999999888887777765 235555666666678888899999999998621 11111
Q ss_pred HhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHHHh
Q 004074 633 MNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLF 707 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L 707 (775)
. ..++..+..++.. .+++..-.++.+|.+|...+.+..+.+..-|+-..+-.+... ..+++.+.|..+|..|
T Consensus 231 ~---~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 231 K---AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp H---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred H---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 1 1133444445543 578888889999999998776666666666655554455544 5788899999888654
No 168
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=90.70 E-value=1.4 Score=46.42 Aligned_cols=174 Identities=16% Similarity=0.096 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHH-HhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhh--Cc
Q 004074 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA--GV 516 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~--G~ 516 (775)
+.+.+.-++..+|.++.+ +.....+.+.+.-..++. ++........+..+.-+++++.|+- .+...+..+... .+
T Consensus 115 P~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF-~~~~g~~~l~~~~~~i 192 (304)
T 3ebb_A 115 PEDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCF-VGQAGQKLMMSQRESL 192 (304)
T ss_dssp CTTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGG-GSHHHHHHHHHTHHHH
T ss_pred CHHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHcc-CCchhHHHHHHHHHHH
Confidence 556777788888887764 444444444322233332 2221111245667888999999994 466677777652 35
Q ss_pred HHHHHHHhccCCh--HHHHHHHHhcccccCCcccccc-ccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHH
Q 004074 517 IPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIG-SSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 517 i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~-~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
++.+...+.+.+. +..++.+++|++........+- ...++..+..++....+.++.-.++.||.+|...+.....+.
T Consensus 193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~la 272 (304)
T 3ebb_A 193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLA 272 (304)
T ss_dssp HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHH
Confidence 5555555544433 3456666689887421111111 123455666677655589999999999999997665555555
Q ss_pred H-cCcHHHHHHhccC-CChHHHHH
Q 004074 594 S-AGIISGLQSLAVP-GDPMWTEK 615 (775)
Q Consensus 594 ~-aG~V~~Lv~LL~~-~~~~i~e~ 615 (775)
+ -|+-..+-.+... ....+.+.
T Consensus 273 k~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 273 KSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHcCHHHHHHHHHhCCCchhHHHH
Confidence 4 3444333334433 23444333
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=90.35 E-value=2.3 Score=43.40 Aligned_cols=172 Identities=14% Similarity=0.121 Sum_probs=123.7
Q ss_pred HHHHHHHhcccccCCccccccccCchHHHHHhhcCCC----CHHHHHHHHHHHHHhcCCC--CChHHHHHcCcHHHHHHh
Q 004074 531 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSL 604 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~----~~~~k~~Al~aL~nLs~~~--~nk~~iv~aG~V~~Lv~L 604 (775)
.+|.+.+..++.+++.|..+.+....-.|--.|+... -+-.+-.+++++..|...+ +....+.+.++||..++.
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 5688888889999999999888776555555565441 1357888999999998543 356666789999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCc-------HHHHHH-HhcCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004074 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGL-------VSGLAT-VLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~-------I~~Lv~-lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
+..|+.--+..|.-++..+-.++.|...+..+..= +..+|. +....+++.-.+.+++-..|+.+. ..+..+
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~-rar~aL 232 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP-RAREAL 232 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH-HHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH-HHHHHH
Confidence 99998888888999999998888888877654322 222222 224679999999999999998764 555555
Q ss_pred HHC-------CCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004074 677 LQE-------GVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 677 ~~~-------G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.+. |.+..++ .+++.+|+.=..++.++
T Consensus 233 ~~~LP~~Lrd~tf~~~l----~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQCLPDQLKDTTFAQVL----KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHSCGGGTSSTTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred HHhCcHHhhChHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 442 3333222 36777888777777665
No 170
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.26 E-value=9.6 Score=40.40 Aligned_cols=197 Identities=14% Similarity=0.033 Sum_probs=137.4
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHH---h--hCcHHHHHHHhccCChHHHHHHHHhc
Q 004074 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML---A--AGVIPLLEKMISNSNSHGAATALYLN 539 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~---~--~G~i~~Lv~lL~s~~~~~~AaaaL~~ 539 (775)
+...+.+..|+..|.. -+-+.+..++.+..++-.....++...+ . ...+..|+.-....+.--.+-.+|..
T Consensus 74 i~~~dll~~Li~~l~~----L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 74 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhccc----CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4556888999998887 7888999988888887543333322222 1 22344444433333323344445555
Q ss_pred ccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHcC---cHHHHHHhccCCChHHHHH
Q 004074 540 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAG---IISGLQSLAVPGDPMWTEK 615 (775)
Q Consensus 540 Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~-nk~~iv~aG---~V~~Lv~LL~~~~~~i~e~ 615 (775)
...++.....|..++.+-.+.+.+..+ +-++..+|..++..|-+.+. -....+... .....-.||.+++-.++..
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 666665555555667788888999988 99999999999999865432 333333322 4555667899999999999
Q ss_pred HHHHHHHHhCCcccHHHH---hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004074 616 SLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 616 al~~L~nLa~~~e~~~~i---~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
++..|..|-..+.+..-+ +.+..-+..++.+|++.+..+|-.|..++--..
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 999999998887776544 445567888999999999999999998875433
No 171
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.68 E-value=2.7 Score=43.33 Aligned_cols=179 Identities=12% Similarity=0.091 Sum_probs=112.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc--cCCch
Q 004074 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV--NNNRN 507 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~--~~~~n 507 (775)
.+...|-+. ++..+.+|+..|......+++ .++.. +..+++.+.-...+.+..+...++.+|..+.. .....
T Consensus 50 ~~~~~lfs~-d~k~~~~ale~L~~~l~~~~~--~~~~~---lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 50 SLMSQLFHK-DFKQHLAALDSLVRLADTSPR--SLLSN---SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHTCS-CHHHHHHHHHHHHHHHHHCHH--HHHHT---HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhhhChH--HHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 455667676 899999999999988765443 22222 22333322211112688888888877766521 01111
Q ss_pred hHHHHh-hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004074 508 KELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 508 k~~i~~-~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
+..-.+ .-.+|.|+.-|..... ++.+-.++..+... ......++.+++-+++. |.+.+..++..|..+-.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSK-NARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 111112 2378999888854443 34455444433321 11134678888888888 99999999999988864
Q ss_pred CCCChHHHHHcCcH---HHHHHhccCCChHHHHHHHHHHHHHhC
Q 004074 585 IPSNIPNLLSAGII---SGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 585 ~~~nk~~iv~aG~V---~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
..+-. ...++ +.+..++.+.+..+++.|+.++..+-.
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33322 24478 999999999999999999998886543
No 172
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.57 E-value=1.8 Score=47.18 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-Hh-HHHHHH--------
Q 004074 609 DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KC-CQMVLQ-------- 678 (775)
Q Consensus 609 ~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~-~~~v~~-------- 678 (775)
+......++.+|..|.....|...++.++.+|..|+..|.+..+.++..|+.+|..+|..+. +. ...+++
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 34666789999999999999999999999999999999999999999999999999997542 21 222222
Q ss_pred --CCCHHHHHHhhhc-CChHHHHHHHHHHHHhHhc
Q 004074 679 --EGVIPALVSISVN-GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 679 --~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~ 710 (775)
..-+..++..+.+ .+...+..+..++..+-..
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 247 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence 2457777876665 4556666666666655543
No 173
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=88.71 E-value=10 Score=38.06 Aligned_cols=181 Identities=20% Similarity=0.140 Sum_probs=106.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc-------CCCHHHHHHHHHHHHHhhc
Q 004074 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-------ERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~-------~~d~~~qe~A~~aL~nLs~ 502 (775)
.++..|.++...+.-.+.+..|+...+.++..+..=...||+..|+.+|..... ..+...+...+.+|..+.
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm- 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM- 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-
Confidence 345666655233333355667776666665444332257889999999875322 124677888899999884
Q ss_pred cCCchhHHHHh-hCcHHHHHHHhccCChH--HHHHHHHhcccccCC--c-ccc----------ccccCchHHHHHhhcCC
Q 004074 503 NNNRNKELMLA-AGVIPLLEKMISNSNSH--GAATALYLNLSFLDD--A-KPI----------IGSSHAVPFLVELCKGK 566 (775)
Q Consensus 503 ~~~~nk~~i~~-~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~--~-k~~----------I~~~g~i~~LV~LL~~~ 566 (775)
++......++. .+++..|+..|.+.... ..++-+|..++..++ + -.. .++..-..++|+.|++.
T Consensus 83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 44445555554 67899999999877653 445544544444332 2 111 12234567889888865
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-------hHHHHHcCcHHHHHHhccCCChH
Q 004074 567 TEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPM 611 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~n-------k~~iv~aG~V~~Lv~LL~~~~~~ 611 (775)
.+.+.+..++..+-.|....++ |..+..+|..+.|-.+=...++.
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~ 214 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED 214 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence 3667766655555555555543 44455677666665543333443
No 174
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.16 E-value=20 Score=43.51 Aligned_cols=218 Identities=9% Similarity=0.036 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhh---c-cCchHHHHH----HhchhccCCCHHHHHHHHHHHHHhhccCCchhHHH
Q 004074 440 NLGQKCNIVEQIRLLLKDDEEARVFTG---A-NGFVVALLR----FLESAVCERNSYAQEIGAMALFNLAVNNNRNKELM 511 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~---~-~G~I~~Lv~----lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i 511 (775)
+|..+..|+..+..++.........+. . ....+.++. .|.+.. ...+.++..|+++|..++..- .+.
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~--~~~-- 492 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQL--TKA-- 492 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGS--CHH--
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhC--CHH--
Confidence 788999999999999864211110000 0 023333333 334311 127899999999999997432 222
Q ss_pred HhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC---------ccccccc--cCchHHHHHhhcCCC-C-HH--HHHH
Q 004074 512 LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD---------AKPIIGS--SHAVPFLVELCKGKT-E-HQ--CKLD 574 (775)
Q Consensus 512 ~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~---------~k~~I~~--~g~i~~LV~LL~~~~-~-~~--~k~~ 574 (775)
.-..+++.++..|.+.+. +..|+.+|.++....+ .+..+.. ...++.|+.++.... . .. ..+.
T Consensus 493 ~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 134578888888876654 4778899988776422 2333432 346667777777630 0 11 2345
Q ss_pred HHHHHHHhcC--CCCChHHHHHcCcHHHHHHhc----cC-CChHHHHHHHHHHHHHhCC--cccHHHHhhCCCcHHHHHH
Q 004074 575 ALHALYNLST--IPSNIPNLLSAGIISGLQSLA----VP-GDPMWTEKSLAVLLNLAAS--AAGKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 575 Al~aL~nLs~--~~~nk~~iv~aG~V~~Lv~LL----~~-~~~~i~e~al~~L~nLa~~--~e~~~~i~~~~g~I~~Lv~ 645 (775)
+..+|..++. ..+....+. .+++.|+..+ .+ .++.....++.+|..++.. ++....+.. ..++.+..
T Consensus 573 l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~ 648 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHH
Confidence 5566655542 122222211 2445555544 22 3556666677777777664 333344443 46777777
Q ss_pred HhcCCCHHHHHHHHHHHHHhh
Q 004074 646 VLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 646 lL~~~s~~~~e~Av~~L~~Lc 666 (775)
+|........+.+..++..+.
T Consensus 649 iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHhhhHhhHHHHHHHHHHHH
Confidence 787655555666666655544
No 175
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=85.85 E-value=20 Score=38.87 Aligned_cols=182 Identities=20% Similarity=0.146 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHH-hhccCchHHHHHHhchhc-------cCCCHHHHHHHHHHHHH
Q 004074 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF-TGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFN 499 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~-i~~~G~I~~Lv~lL~s~~-------~~~d~~~qe~A~~aL~n 499 (775)
-..++..|.++...+.-.+.+..|+.....++-.+.. ++ .+++..|+.+|..-. ...+...|...+.+|..
T Consensus 68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka 146 (383)
T 3eg5_B 68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 3456777776623333345678888777766554432 44 778999999996421 12356788888999999
Q ss_pred hhccCCchhHHHHh-hCcHHHHHHHhccCCh--HHHHHHHHhcccccCC--c--ccc---------ccccCchHHHHHhh
Q 004074 500 LAVNNNRNKELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--A--KPI---------IGSSHAVPFLVELC 563 (775)
Q Consensus 500 Ls~~~~~nk~~i~~-~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~--~--k~~---------I~~~g~i~~LV~LL 563 (775)
+. ++......++. ..++..|+..|.+... +..|+-+|..++..++ + ... .++..-..++|..|
T Consensus 147 lm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L 225 (383)
T 3eg5_B 147 FM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 225 (383)
T ss_dssp HT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred Hh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 84 44545555554 5789999999988765 3445555544444332 1 111 23345578899999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCC-------hHHHHHcCcHHHHHHhccCCChH
Q 004074 564 KGKTEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPM 611 (775)
Q Consensus 564 ~~~~~~~~k~~Al~aL~nLs~~~~n-------k~~iv~aG~V~~Lv~LL~~~~~~ 611 (775)
+++.+.+.+..++..+-.|....++ |..+...|..+.+-.+=...+..
T Consensus 226 ~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 226 KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED 280 (383)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHH
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChh
Confidence 8754777777665555555554443 34455677777766643333443
No 176
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=85.79 E-value=1.6 Score=49.34 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.+..++..+... .|+++..++-.|+.+ + ..+.+ .++++.++.-|.+ .|.+++..|+.+|..++ ..
T Consensus 264 IL~qLV~~l~~~-~WEVRHGGLLGLKYL-~------DLL~~Ld~Vv~aVL~GL~D----~DDDVRAVAAetLiPIA--~p 329 (800)
T 3oc3_A 264 IIEQLVGFLDSG-DWQVQFSGLIALGYL-K------EFVEDKDGLCRKLVSLLSS----PDEDIKLLSAELLCHFP--IT 329 (800)
T ss_dssp HHHHHTTGGGCS-CHHHHHHHHHHHHHT-G------GGCCCHHHHHHHHHHHTTC----SSHHHHHHHHHHHTTSC--CS
T ss_pred HHHHHHhhcCCC-CeeehhhhHHHHHHH-H------HHHHHHHHHHHHHHhhcCC----cccHHHHHHHHHhhhhc--ch
Confidence 344444444555 899999999999998 1 12222 5667777777776 78899999999999997 12
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh----HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004074 506 RNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~----~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
... ..++..+...|.+-++ ....+..|..|...+.. .-.....+|.|.-.|++. -..++.+++.+|..
T Consensus 330 ~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~t 401 (800)
T 3oc3_A 330 DSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKN 401 (800)
T ss_dssp STH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTT
T ss_pred hhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHH
Confidence 111 1234444455544332 33334444444333321 111247899999999998 89999999999988
Q ss_pred hcCCCCChHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHH
Q 004074 582 LSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~ 621 (775)
+. ...++..+.+ +|-+.+..+.+.+..+..
T Consensus 402 fL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 402 LS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 87 1224444444 556677888787777764
No 177
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=85.69 E-value=0.74 Score=46.80 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=35.2
Q ss_pred cccccccccccCceec-CCCCccchHHHHHHHhc-CCCCCCCCCCCCCCC
Q 004074 283 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQKLPHL 330 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~ 330 (775)
..|.||.++..-=+.= .||+.|-+.|+.+|+.. ++..||.|+.+.+..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4577777766633222 28999999999999975 467999999876544
No 178
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=84.38 E-value=3.8 Score=41.23 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=80.4
Q ss_pred cCcHHHHHHhccC----C-------ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004074 595 AGIISGLQSLAVP----G-------DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 595 aG~V~~Lv~LL~~----~-------~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
.||+..|+.+|.. + +......++.+|..|.....|...++.++.+|..|+..|.+..+.++..++.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5666666665531 1 3455678999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCh-Hh-HHHHHH----------CCCHHHHHHhhh-cCChHHHHHHHHHHHHhHhc
Q 004074 664 LLCNGNE-KC-CQMVLQ----------EGVIPALVSISV-NGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 664 ~Lc~~~~-~~-~~~v~~----------~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~~ 710 (775)
.+|..+. .. ...+++ ..-+..++..+. +.+...+..+..++..+-..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~ 181 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 181 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence 9996542 12 222222 235566665554 34445555555555555443
No 179
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.22 E-value=7.3 Score=40.08 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=77.5
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004074 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
-.+|.|+.-+.+. ...+++.+-.+|..++. +.- ..+.+.+++-+.+.+...++.++..|..+-..... .
T Consensus 132 ~~lP~LveKlGd~-k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~-~- 201 (266)
T 2of3_A 132 AFVPYLLLKTGEA-KDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI-S- 201 (266)
T ss_dssp HHHHHHHHGGGCS-SHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS-G-
T ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC-C-
Confidence 4689999999887 78888888888777652 111 23666777777888899999999999888653222 1
Q ss_pred HhhCCCcH---HHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004074 633 MNSTPGLV---SGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 633 i~~~~g~I---~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
. ..++ +.+..++.+.+..+|+.|+.++..+..
T Consensus 202 --~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 --P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp --G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred --c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1 2468 999999999999999999999987765
No 180
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=83.79 E-value=29 Score=37.47 Aligned_cols=182 Identities=20% Similarity=0.138 Sum_probs=107.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc-------CCCHHHHHHHHHHHHHhhc
Q 004074 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-------ERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~-------~~d~~~qe~A~~aL~nLs~ 502 (775)
.++..|.++...+.-.+.+..|+...+.++-.+..=...||+..|+.+|..... ..+...+...+.+|..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm- 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM- 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-
Confidence 456667665232222345677777666665444331136889999998864321 125677888899999884
Q ss_pred cCCchhHHHH-hhCcHHHHHHHhccCChH--HHHHHHHhcccccCC--c-cc----------cccccCchHHHHHhhcCC
Q 004074 503 NNNRNKELML-AAGVIPLLEKMISNSNSH--GAATALYLNLSFLDD--A-KP----------IIGSSHAVPFLVELCKGK 566 (775)
Q Consensus 503 ~~~~nk~~i~-~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~--~-k~----------~I~~~g~i~~LV~LL~~~ 566 (775)
++......++ ..+++..|+..|.+.... ..++-+|..++..++ + -. ..++..-..+||+.|.++
T Consensus 87 N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 87 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 4444555454 467899999999876653 344444444444332 2 11 112334567899988865
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-------hHHHHHcCcHHHHHHhccCCChHH
Q 004074 567 TEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPMW 612 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~n-------k~~iv~aG~V~~Lv~LL~~~~~~i 612 (775)
.+.+.+..++..+-.|....++ |..+..+|..+.|-.+=...++.+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 4677766655555555555553 455666777777665544445544
No 181
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=83.01 E-value=41 Score=40.45 Aligned_cols=156 Identities=11% Similarity=0.043 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHH
Q 004074 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 518 (775)
Q Consensus 439 ~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~ 518 (775)
.+|..+..++..|..++..-.+ .....++.++..|..- ..+++.++..++++|..++..-..+.. .-..+++
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl~ 532 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPV--MINSVLP 532 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTHH
T ss_pred CchHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHH
Confidence 3888999999999998865332 1134566666665432 124678999999999988632111221 1246888
Q ss_pred HHHHHhccCChHHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCCC--ChHHHH
Q 004074 519 LLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS--NIPNLL 593 (775)
Q Consensus 519 ~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs~~~~--nk~~iv 593 (775)
.|+..|.+...+..|+.++.+++.. .+..+.. .+.+..|..++..+ .+...+..+..++..++...+ .....+
T Consensus 533 ~l~~~l~~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 533 LVLHALGNPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888887633367788888888743 3333432 34555666777653 257889999999999875433 232222
Q ss_pred HcCcHHHHHHhc
Q 004074 594 SAGIISGLQSLA 605 (775)
Q Consensus 594 ~aG~V~~Lv~LL 605 (775)
...+++++..+
T Consensus 611 -~~l~~~l~~~l 621 (963)
T 2x19_B 611 -HSLISPYIQQL 621 (963)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 23555555543
No 182
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=81.82 E-value=2.6 Score=42.84 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHH
Q 004074 641 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~ 702 (775)
+.|..++.+.+..++..++..| ..+.|..| .+.+..+++.|..
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l------------------~~~~L~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHA------------------SLEALREL-DEPDPEVRLAIAG 239 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHS------------------CHHHHHHC-CCCCHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHc-cCCCHHHHHHHHH
Confidence 3455556666666666665553 14556667 8888888888764
No 183
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=79.61 E-value=13 Score=45.07 Aligned_cols=215 Identities=12% Similarity=0.019 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhc-cCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHH
Q 004074 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-CERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 518 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~-~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~ 518 (775)
+|..+..|+..+..++..-.... ...++.++.++..-. ...++.++..++++|..++..-..+... -..+++
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~ 549 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAIN 549 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHH
Confidence 78899999999999986533211 244555555442211 0137889999999999986321222211 123566
Q ss_pred HHHHHhccCChHHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCC-CCHHHHHHHHHHHHHhcCC--CCChHHHH
Q 004074 519 LLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLSTI--PSNIPNLL 593 (775)
Q Consensus 519 ~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs~~--~~nk~~iv 593 (775)
.|+..|+ ......|+.++.+++.. .+..+.. .+.+..|..++..+ .+...+..+..++..++.. .+.+...+
T Consensus 550 ~l~~~l~-~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 550 LLVRGLN-SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHHHH-SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHhC-hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6777674 34468889999888743 3333332 35666777778764 2578888888888888643 23333333
Q ss_pred HcCcHHHHHHhc----cCC--ChHHHHHHHHHHHHHhC---Cc--------------ccHHHHhhCCCcHHHHHHHhcC-
Q 004074 594 SAGIISGLQSLA----VPG--DPMWTEKSLAVLLNLAA---SA--------------AGKEEMNSTPGLVSGLATVLDT- 649 (775)
Q Consensus 594 ~aG~V~~Lv~LL----~~~--~~~i~e~al~~L~nLa~---~~--------------e~~~~i~~~~g~I~~Lv~lL~~- 649 (775)
. ..+++++..+ ... +..........|..|+. .- +.-..+.. ..++.+..++..
T Consensus 627 ~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 627 D-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMW 703 (971)
T ss_dssp H-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhc
Confidence 2 2455555433 222 22223334444444432 10 01111221 466666666653
Q ss_pred -CCHHHHHHHHHHHHHhhc
Q 004074 650 -GELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 650 -~s~~~~e~Av~~L~~Lc~ 667 (775)
.++.+.+.++.++..++.
T Consensus 704 ~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 477899999999988764
No 184
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=78.24 E-value=9.3 Score=41.46 Aligned_cols=116 Identities=16% Similarity=0.032 Sum_probs=80.8
Q ss_pred cCcHHHHHHhccC-----------CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004074 595 AGIISGLQSLAVP-----------GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 595 aG~V~~Lv~LL~~-----------~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
.||+..|+.+|.. .+......++.+|..|.....|...++.++.+|..|+..|.+..+.++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4566666665521 13455678999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCh-Hh-HHHHHH----------CCCHHHHHHhhh-cCChHHHHHHHHHHHHhHhc
Q 004074 664 LLCNGNE-KC-CQMVLQ----------EGVIPALVSISV-NGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 664 ~Lc~~~~-~~-~~~v~~----------~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~~ 710 (775)
.+|..+. .. ...+++ ..-+..|+..+. +.+...+..+..++..+-..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~ 185 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 185 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCC
Confidence 9997542 11 222222 235666775554 34455555555565555443
No 185
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=72.83 E-value=14 Score=41.04 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHHHHhcC-CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHH
Q 004074 565 GKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 643 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~-~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~L 643 (775)
.| +...|+.|+.-|...-. .++-... ++..+++|..+.+..++..|+..|..+|.. +... ..+..|
T Consensus 39 kg-~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~------kiaDvL 105 (507)
T 3u0r_A 39 KG-GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP------RVADIL 105 (507)
T ss_dssp GS-CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH------HHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh------hHHHHH
Confidence 45 78888888888887764 3443433 566788999888999999999999999987 4433 345678
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004074 644 ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 644 v~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
+.+|.+.++......-.+|..|-..++.. .+..|..-+.++++.+|+++.+.|
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHH
Confidence 88999888888887777888777766432 345555555557788888877666
No 186
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=69.54 E-value=9.6 Score=42.33 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=67.6
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004074 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
..+|.++++|+.+. +..++..|++.|..+|.+ ++..+ ++..|++||...+..-...+-.+|..|-..+
T Consensus 64 ~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D----- 131 (507)
T 3u0r_A 64 DSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADILTQLLQTDDSAEFNLVNNALLSIFKMD----- 131 (507)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-----
Confidence 45789999999998 999999999999999988 77555 4567899998776543333334444333211
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004074 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 664 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~ 664 (775)
..+.+..|..-+..+++.+||.++..|..
T Consensus 132 ---pk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 132 ---AKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp ---HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 12445555555666778888888777744
No 187
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=69.50 E-value=36 Score=36.04 Aligned_cols=197 Identities=11% Similarity=0.009 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004074 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
.+..++..|..- +.+.|..++.....+.+.....|-..++ .. =|-++..|-.+.+ ++++--.+-..|+... .+
T Consensus 79 ll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe--~~diAl~~G~mLReci-r~ 153 (341)
T 1upk_A 79 LLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYE--SPEIALNCGIMLRECI-RH 153 (341)
T ss_dssp HHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGG--STTTHHHHHHHHHHHH-TS
T ss_pred HHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhc--cchhHhHHHHHHHHHH-Hh
Confidence 455667777777 8999999999999998876544333222 01 1333333333332 2233333334455554 45
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcc-cccCCccc-cccc--cCchHHHHHhhcCCCCHHHHHHHHHH
Q 004074 505 NRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNL-SFLDDAKP-IIGS--SHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~L-s~~~~~k~-~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
+.-...|...+.+-.+......++-. ..|.+++..| ..+...-. .+.. ...+...-+||.++ |--.+..+++.
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHH
Confidence 66666677777777788887776632 3466666543 32221111 1111 24567778899998 99999999999
Q ss_pred HHHhcCCCCChHHHHH----cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc
Q 004074 579 LYNLSTIPSNIPNLLS----AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG 629 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~----aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~ 629 (775)
|..|-.+..|-..|.+ ..-+..++.||.+.+..++-+|..+..-.+.++..
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 9999999998877765 34677788899999999999999999887776543
No 188
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=64.34 E-value=78 Score=38.11 Aligned_cols=168 Identities=11% Similarity=0.016 Sum_probs=93.3
Q ss_pred HHHHHHHHhcccccCCccccccccCchHHHHHhh---c--CCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHh
Q 004074 530 HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC---K--GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSL 604 (775)
Q Consensus 530 ~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL---~--~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~L 604 (775)
++.|+.++..++..-.... ...++.++.++ . +. ++.++..|+++|..++..-....... ..+++.|+..
T Consensus 481 ~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~l~~~ 554 (971)
T 2x1g_F 481 LEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI-PPAINLLVRG 554 (971)
T ss_dssp HHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHH
Confidence 4667777766654322111 23444444443 2 34 78999999999999985322111111 1255666665
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhC-CCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCC-hHhHHHHHHCC
Q 004074 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDT--GELIEQEQAVSCLFLLCNGN-EKCCQMVLQEG 680 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-~g~I~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G 680 (775)
|. +.++..|+.+|.+|+.. .+..+... +..+..|..++.. .+...++.+..++..+...- ++......+ .
T Consensus 555 l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ 628 (971)
T 2x1g_F 555 LN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-I 628 (971)
T ss_dssp HH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-H
T ss_pred hC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-H
Confidence 52 66789999999999952 33333211 2455566667766 46789999999998887532 122222221 1
Q ss_pred CHHHHH----HhhhcC--ChHHHHHHHHHHHHhHh
Q 004074 681 VIPALV----SISVNG--STRGRDKAQRLLMLFRE 709 (775)
Q Consensus 681 ~i~~Lv----~Ll~~g--~~~~k~kA~~LL~~L~~ 709 (775)
.+++++ .++.+. ++..+..+...|..|..
T Consensus 629 ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 629 IVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 333333 333333 44455666666666543
No 189
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.38 E-value=14 Score=31.23 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=36.6
Q ss_pred ccccccccccc-----cCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004074 282 ELRCPISLQLM-----YDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 282 ~f~CPIs~~~m-----~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.-.|.||++=. -+|.+. .|+...||.|.+.=..+|+..||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 35789988631 234443 578899999999989999999999998875
No 190
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=63.15 E-value=46 Score=35.43 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=78.2
Q ss_pred HHHHhhccCCchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCccc-cccc-cCchHHHHHhhcCCCCHHH
Q 004074 496 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKP-IIGS-SHAVPFLVELCKGKTEHQC 571 (775)
Q Consensus 496 aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~-~I~~-~g~i~~LV~LL~~~~~~~~ 571 (775)
-|+||-.++++...-++..+++..+..+++-+++. ......|...|. .|. .... ...+|.++..+.-..+.++
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD---aksL~~t~L~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD---AKALAKTPLENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT---CGGGGTSCCTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc---hHHHhhccccccchHHHHHhccCCCcce
Confidence 46677676666677889999999999999988863 333444444432 232 1122 5678999888864338899
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHHhc
Q 004074 572 KLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLA 605 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~LL 605 (775)
.-...+-|.|...+.. .|..++..|+|+.|-..+
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 9999999999987764 788888999999998855
No 191
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=60.86 E-value=20 Score=44.04 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCh-HHHHHcCcHHHHHHhccC-----CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcH
Q 004074 567 TEHQCKLDALHALYNLSTIPSNI-PNLLSAGIISGLQSLAVP-----GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV 640 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~nk-~~iv~aG~V~~Lv~LL~~-----~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I 640 (775)
.+...++++++|+..++...... ..-.=..+++.|+.++.. ....++..++++|+..+.--........ ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence 37999999999999998654422 211223467778887753 1223334555777665542111122222 345
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004074 641 SGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
..|++-|....+.+++.|+.+|..||..
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 5555556566789999999999999973
No 192
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=60.78 E-value=25 Score=43.21 Aligned_cols=154 Identities=8% Similarity=-0.035 Sum_probs=86.3
Q ss_pred CchHHHHHHhchhcc--CCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhc
Q 004074 469 GFVVALLRFLESAVC--ERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLN 539 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~--~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~ 539 (775)
..++.++..|..... ..+-...+.+++++..++..-......-.=..+++.|+.++..... +..+++++..
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 344455555543221 2468889999999999974333222222234578888888764221 1245566665
Q ss_pred ccccCC-ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH------cCcHHHHHH----hccCC
Q 004074 540 LSFLDD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS------AGIISGLQS----LAVPG 608 (775)
Q Consensus 540 Ls~~~~-~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~------aG~V~~Lv~----LL~~~ 608 (775)
.+.--. +...+ ..++..|+..+.+. ++++...|++||.+||.. .+..++. ..-++.++. .+..-
T Consensus 527 y~~wl~~~~~~L--~~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l 601 (1023)
T 4hat_C 527 YPRFLKAHWNFL--RTVILKLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADL 601 (1023)
T ss_dssp CHHHHHHCHHHH--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS
T ss_pred HHHHHhccHHHH--HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhC
Confidence 443211 11111 24455566666555 789999999999999863 3334432 113444444 23333
Q ss_pred ChHHHHHHHHHHHHHhCCc
Q 004074 609 DPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 609 ~~~i~e~al~~L~nLa~~~ 627 (775)
+..-...+..++..+...-
T Consensus 602 ~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 602 QPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 4444566677777776643
No 193
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=59.52 E-value=7.6 Score=33.43 Aligned_cols=53 Identities=19% Similarity=0.500 Sum_probs=41.2
Q ss_pred CCCccccccccccccCceecCC--C----CccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004074 279 PPEELRCPISLQLMYDPVIIAS--G----QTYERICIEKWLSDGHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~--G----~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l 332 (775)
+++.+.|||++++-..=|.+.- | .-||..++.+-..+| ..=|.+|++++..++
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~sMI 82 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITASII 82 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCTTTE
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCHhhE
Confidence 3477899999999999998832 2 359999999988764 355889998876654
No 194
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=58.75 E-value=29 Score=32.76 Aligned_cols=73 Identities=4% Similarity=-0.016 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.+. +..+|..|+..|-.+.++. ...+..++...++..|++++... .++.+++.++..|...+
T Consensus 51 keA~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~---~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK---AHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHH
Confidence 46667777889988 9999999999999999984 55677788889999999999642 57889998888877765
No 195
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=56.12 E-value=2.4e+02 Score=34.32 Aligned_cols=219 Identities=11% Similarity=0.033 Sum_probs=125.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc--
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-- 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-- 503 (775)
..+..++..+.++ +.+.|.+|-..|..+-+. .++...+..+|.+. .+..++..|+..|.|....
T Consensus 16 ~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~----------p~~~~~l~~iL~~s---~~~~vr~~aa~~Lk~~i~~~W 81 (1049)
T 3m1i_C 16 ALLDQVVSTFYQG-SGVQQKQAQEILTKFQDN----------PDAWQKADQILQFS---TNPQSKFIALSILDKLITRKW 81 (1049)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHS----------TTGGGGHHHHHHHC---SCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhC----------chHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHhhC
Confidence 5677777777777 667777777777766433 35666777777652 5888999999999887421
Q ss_pred ---CCchhHHHHhhCcHHHHHHHhccC-----Ch--HHHHHHHHhcccccCC-ccccccccCchHHHHHhhcCCCCHHHH
Q 004074 504 ---NNRNKELMLAAGVIPLLEKMISNS-----NS--HGAATALYLNLSFLDD-AKPIIGSSHAVPFLVELCKGKTEHQCK 572 (775)
Q Consensus 504 ---~~~nk~~i~~~G~i~~Lv~lL~s~-----~~--~~~AaaaL~~Ls~~~~-~k~~I~~~g~i~~LV~LL~~~~~~~~k 572 (775)
.++.|.. ++...+..+...-.++ .. +...+.++..++..+- ... .+.++.|+.+++ . +...+
T Consensus 82 ~~l~~~~~~~-ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~-~~~~~ 154 (1049)
T 3m1i_C 82 KLLPNDHRIG-IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-S-SVNVC 154 (1049)
T ss_dssp GGSCHHHHHH-HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-T-CHHHH
T ss_pred ccCCHHHHHH-HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-c-ChHHH
Confidence 1122222 3333444444332111 11 2233333433433321 111 578899999997 4 66678
Q ss_pred HHHHHHHHHhcCC-----CC----Ch-----HHHHHc--CcHHHHHHhccC-CChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004074 573 LDALHALYNLSTI-----PS----NI-----PNLLSA--GIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 573 ~~Al~aL~nLs~~-----~~----nk-----~~iv~a--G~V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
+.++.+|..|+.. .+ .+ ..+... .++..+..++.+ .+..+...++.++.+....-.. ..+..
T Consensus 155 ~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~ 233 (1049)
T 3m1i_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYE 233 (1049)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHS
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhh
Confidence 8888888888621 11 11 112221 122233334432 4567788889888877654332 22343
Q ss_pred CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004074 636 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
...+..+.+.+. .++..++.|+.+|..+...
T Consensus 234 -~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 234 -TNILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp -SSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred -hhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 356666663222 3788899999999888854
No 196
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=55.72 E-value=27 Score=42.09 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=65.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc---cCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcH
Q 004074 564 KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA---VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV 640 (775)
Q Consensus 564 ~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL---~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I 640 (775)
.+. +...++.|+.+|..++..-... ....++.++..+ .++++.++..++++|..++..-....... ...+
T Consensus 459 ~~~-~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl 531 (963)
T 2x19_B 459 EPY-SWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVL 531 (963)
T ss_dssp CSC-CHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTH
T ss_pred CCC-chHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHH
Confidence 444 8899999999999998543210 012334444432 33577888999999998876311112344 3688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004074 641 SGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
+.|+..|.. +.++..|+.+|..+|..
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 888888854 88999999999999963
No 197
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=55.58 E-value=3.5e+02 Score=32.79 Aligned_cols=224 Identities=11% Similarity=0.001 Sum_probs=123.2
Q ss_pred hHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc-
Q 004074 426 ERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN- 503 (775)
Q Consensus 426 ~~i~~Ll~-~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~- 503 (775)
+.+...+. .+....+.+.|.+|-..|..+-+. + ++......+|.... ..+..++.-|+.+|.+....
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~-~~~~~vr~fa~~~L~~~I~~l 74 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKT-KYKPSTRLICLQTLSEKVREW 74 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTT-TSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHhC
Confidence 34555554 333322577888887777766543 3 34556666775521 02788888888888665321
Q ss_pred CCc-h--hHHHHhhCcHHHHHHHhc-cCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCH-HHHHHHH
Q 004074 504 NNR-N--KELMLAAGVIPLLEKMIS-NSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH-QCKLDAL 576 (775)
Q Consensus 504 ~~~-n--k~~i~~~G~i~~Lv~lL~-s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~-~~k~~Al 576 (775)
.++ + ....+....+..+...-. .+.. +...+.++..+...+-. . .=.+.++-|+.++..+ +. .+....+
T Consensus 75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~--~Wp~~i~~l~~~~~~~-~~~~~~~~~L 150 (980)
T 3ibv_A 75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-S--NWNDFFASLQGVIAAS-SQSEFSNFYL 150 (980)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-T--TCTTHHHHHHHHHHHH-CCHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-c--cCchHHHHHHHHhcCC-ChhHHHHHHH
Confidence 222 0 223334445555554110 1111 23344444333322100 0 1146888999998765 43 4566667
Q ss_pred HHHHHhcC---CC---CC-----hH----HHHHcCc----HHHHHHhcc----CCChHHHHHHHHHHHHHhCCcccHHHH
Q 004074 577 HALYNLST---IP---SN-----IP----NLLSAGI----ISGLQSLAV----PGDPMWTEKSLAVLLNLAASAAGKEEM 633 (775)
Q Consensus 577 ~aL~nLs~---~~---~n-----k~----~iv~aG~----V~~Lv~LL~----~~~~~i~e~al~~L~nLa~~~e~~~~i 633 (775)
++|..|+. +. .. |. ..+.... ++....+|. ..+..+...++.+|......- .-..+
T Consensus 151 riL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i 229 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLI 229 (980)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHH
T ss_pred HHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhh
Confidence 77775541 11 11 11 1111111 333444442 356778888888888887742 33444
Q ss_pred hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004074 634 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 634 ~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
.. ...++.+..+|. ++..++.|+.+|..+.+.
T Consensus 230 ~~-~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 230 VN-EPCMNLLYSFLQ--IEELRCAACETMTEIVNK 261 (980)
T ss_dssp HC-HHHHHHHHHHTT--SHHHHHHHHHHHHHHHHS
T ss_pred hc-chHHHHHHHHcC--ChHHHHHHHHHHHHHHHc
Confidence 44 478888888875 489999999999998864
No 198
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=52.65 E-value=9.3 Score=38.73 Aligned_cols=141 Identities=13% Similarity=0.040 Sum_probs=89.7
Q ss_pred HHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccc
Q 004074 473 ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS 552 (775)
Q Consensus 473 ~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~ 552 (775)
.|..++.+ .+..++..++.. |. .+.|..++...+.....+++- ++.
T Consensus 78 ~l~~L~~D----~~~~VR~~aA~~---L~---------------~~~L~~ll~D~d~~VR~~aA~-~l~----------- 123 (244)
T 1lrv_A 78 ALTPLIRD----SDEVVRRAVAYR---LP---------------REQLSALMFDEDREVRITVAD-RLP----------- 123 (244)
T ss_dssp GGGGGTTC----SSHHHHHHHHTT---SC---------------SGGGGGTTTCSCHHHHHHHHH-HSC-----------
T ss_pred HHHHHccC----cCHHHHHHHHHH---CC---------------HHHHHHHHcCCCHHHHHHHHH-hCC-----------
Confidence 35556665 788888888753 21 134566666666533222222 221
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004074 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
.+.|..++++. +..++..++.. +. .+.|..++.+.+..++..++.. +
T Consensus 124 ---~~~L~~L~~D~-d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR~~aa~~---l--------- 170 (244)
T 1lrv_A 124 ---LEQLEQMAADR-DYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVRKLVAKR---L--------- 170 (244)
T ss_dssp ---TGGGGGGTTCS-SHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHHHHHHHH---S---------
T ss_pred ---HHHHHHHHcCC-CHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHHHHHHHc---C---------
Confidence 13456667777 99999988873 21 2234457778888887777764 1
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004074 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
..+.|..++...++.++..++..| ..+.|..|+.+....+|..++.-|
T Consensus 171 ------~~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 171 ------PEESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp ------CGGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred ------CHHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcC
Confidence 113344566788899999888652 246678889999999999988653
No 199
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=51.54 E-value=3.5 Score=28.51 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=12.0
Q ss_pred ccccccccccccCce
Q 004074 282 ELRCPISLQLMYDPV 296 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV 296 (775)
-|.||||+.-+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 499999998887763
No 200
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.52 E-value=34 Score=32.58 Aligned_cols=77 Identities=6% Similarity=0.012 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhc--cCCCHHHHHHHHHHHHHhh
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~--~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.++ +..+|..|+..|-.+.++. ...+..++...++..|++++.... ...+..+++.++..|...+
T Consensus 49 k~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45666777889988 9999999999999999985 456777888999999999986311 1246899999998887775
Q ss_pred c
Q 004074 502 V 502 (775)
Q Consensus 502 ~ 502 (775)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=50.84 E-value=44 Score=30.57 Aligned_cols=72 Identities=6% Similarity=0.012 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.+. ++.+|..|+..|..+.++. ......++...++..|+++++. .++.++...+..+...+
T Consensus 41 k~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~----~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK----GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHH
Confidence 45666777789988 9999999999999999875 4456677788899999999875 68899999888887765
No 202
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=50.72 E-value=4.4 Score=26.73 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.2
Q ss_pred CCccccccccccccCc
Q 004074 280 PEELRCPISLQLMYDP 295 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP 295 (775)
|..|.||||+..|-||
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 4578899999988887
No 203
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.16 E-value=44 Score=30.97 Aligned_cols=77 Identities=9% Similarity=0.035 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhc--cCCCHHHHHHHHHHHHHhh
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~--~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.+. ++.+|..|+..|-.+.++ +......++...++..|++++.... ...+..+++..+..|...+
T Consensus 37 k~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45667777889988 999999999999999998 4566778888999999999987411 1247899999888887775
Q ss_pred c
Q 004074 502 V 502 (775)
Q Consensus 502 ~ 502 (775)
.
T Consensus 116 ~ 116 (148)
T 1mhq_A 116 V 116 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.76 E-value=46 Score=33.03 Aligned_cols=73 Identities=10% Similarity=-0.013 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.+. ++.+|..|+..|-.+.++. ......|+...++..|++++... .+..+++..+..|...+
T Consensus 44 k~a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 44 KYAVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ---VEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHH
Confidence 46677788899988 9999999999999999874 44577788888999999998652 57889999988887775
No 205
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=48.75 E-value=95 Score=38.13 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=75.1
Q ss_pred cHHHHHHHhccCCh-HHHHHHHHhcccccCCccccccccCchHHHHHhhcCC---CCHHHHHHHHHHHHHh----cCCCC
Q 004074 516 VIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK---TEHQCKLDALHALYNL----STIPS 587 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~---~~~~~k~~Al~aL~nL----s~~~~ 587 (775)
++..+.+++.++.- ...|+.+|..+..... -....+..+..|+.++ .++.+++.|+-++.+| |.+..
T Consensus 357 a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~~-----Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~ 431 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ-----ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV 431 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCC
Confidence 67777777776543 3345444432221110 1134567777777653 2556666676666665 44433
Q ss_pred ChHHHHHcCcHHHHHHh----ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-------CCCHHHHH
Q 004074 588 NIPNLLSAGIISGLQSL----AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-------TGELIEQE 656 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~L----L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-------~~s~~~~e 656 (775)
.+. ...|+.+.++ +..++..-+..++.+|.|+.. +..++.|..+|. +...+++.
T Consensus 432 ~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~ 496 (1056)
T 1lsh_A 432 SCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQA 496 (1056)
T ss_dssp SCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred CCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHH
Confidence 221 1234555543 455666656778889998754 234555555553 12456777
Q ss_pred HHHHHHHHhhcCCh
Q 004074 657 QAVSCLFLLCNGNE 670 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~ 670 (775)
.|+.+|..+....+
T Consensus 497 aAi~ALr~~~~~~p 510 (1056)
T 1lsh_A 497 EAIMALRNIAKRDP 510 (1056)
T ss_dssp HHHHTTTTGGGTCH
T ss_pred HHHHHHHHhhhhch
Confidence 77777777765543
No 206
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=48.10 E-value=53 Score=30.19 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=53.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CChHhHHHHHHCC-CHHHHHHhhhcC--------ChHHHHHHHHHHHHhH
Q 004074 639 LVSGLATVLDTGELIEQEQAVSCLFLLCN-GNEKCCQMVLQEG-VIPALVSISVNG--------STRGRDKAQRLLMLFR 708 (775)
Q Consensus 639 ~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~-~~~~~~~~v~~~G-~i~~Lv~Ll~~g--------~~~~k~kA~~LL~~L~ 708 (775)
....|.+-|...++.++-+|+.+|-.||. +++.+...+.+.- .|..|..+.--. ...+|.+|..++.+|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 45667788888899999999999999996 4556666665553 444554433222 2578999999999998
Q ss_pred hccCC
Q 004074 709 EQRQR 713 (775)
Q Consensus 709 ~~~~~ 713 (775)
+....
T Consensus 130 d~~~~ 134 (140)
T 1vdy_A 130 SEENG 134 (140)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 76443
No 207
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=45.53 E-value=39 Score=30.91 Aligned_cols=73 Identities=10% Similarity=0.101 Sum_probs=54.9
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004074 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
.++..|.+.|.++++.++-.|+.+|-.+..+ .......+.....+..|+.++...++.++++...++......
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999887777654 334455555555677777777778899999999999876654
No 208
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=44.08 E-value=43 Score=31.52 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=55.3
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHHHhHhc
Q 004074 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~ 710 (775)
.++..|.+.|.++++.++-.|+.+|-.+..+ .......+.....+..|+.++.. .++.+|+++..++..-...
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999988877764 44555566666677778777765 5689999999988776654
No 209
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=44.01 E-value=1.7e+02 Score=31.22 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=85.3
Q ss_pred HHHhcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHH
Q 004074 579 LYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQE 656 (775)
Q Consensus 579 L~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e 656 (775)
|.||..++. ...-+|++.+|..+...+.-++..+.......|...+....-... .-...+|-++..+. ++++++--
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceEE
Confidence 445555554 456789999999999999888888888888888887764432221 22367888888887 67888989
Q ss_pred HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh
Q 004074 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV 690 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~ 690 (775)
...+.|.++..+..-.+..++..|+|+.|.....
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 9999999999888778888999999999976543
No 210
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.51 E-value=68 Score=31.55 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.+. +..+|..|+..|-.+.++. ...+..|+...++..|+.++.+. .+..+++.++..+...+
T Consensus 41 k~a~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST---PHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHH
Confidence 46677777899988 9999999999999999986 44667788888999999998762 57889988887777665
No 211
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=40.12 E-value=49 Score=30.63 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=57.0
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhc------CChHHHHHHHHHHHHhHhc
Q 004074 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVN------GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~------g~~~~k~kA~~LL~~L~~~ 710 (775)
.++..|.+.|.++++.++-.|+.+|-.+..+ +......+.....+..|+.++.. .+..+|+++..++..-...
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4577788889999999999999988887764 44556666666788888887763 3679999998888777654
No 212
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=39.86 E-value=88 Score=28.93 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhhHHhhccCchHHHHHHhchhc--cCCCHHHHHHHHHHHHHhh
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~-~nr~~i~~~G~I~~Lv~lL~s~~--~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.+. ++.+|..|+..|-.+.++.. .....|+...++..|++++.... ...+..++...+..|...+
T Consensus 47 k~a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 47 PLATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 45666777899988 99999999999999998764 44667888899999999996421 1257889999888887775
Q ss_pred c
Q 004074 502 V 502 (775)
Q Consensus 502 ~ 502 (775)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 213
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=39.77 E-value=28 Score=35.35 Aligned_cols=128 Identities=18% Similarity=0.118 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc-hhHHHHhhCcHHHHH
Q 004074 443 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR-NKELMLAAGVIPLLE 521 (775)
Q Consensus 443 ~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~-nk~~i~~~G~i~~Lv 521 (775)
.+.-++..+|.++.+... ++.+..++..... ..++..+.-+++++.|+- .+.. .+..+.+......++
T Consensus 70 ~~fP~lDllRl~~~~~~~-------~~~l~~~l~~~~~---~~~~~~~ml~lR~l~NlF-~~~~~g~~l~~~~~~~~~i~ 138 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLG---NKNITLTMLTVRILVNCF-NNENWGVKLLESNQVYKSIF 138 (253)
T ss_dssp CCHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHT-TCTTTHHHHHTSHHHHTTHH
T ss_pred ccchHHHHHHHHHcCCch-------HHHHHHHHHHhcC---CCchhHHHHHHHHHHHcc-cCCchHHHHHhcchhHHHHH
Confidence 466778888887766442 2334433332222 257788999999999994 4566 566665554455555
Q ss_pred HHhccCC-------h---HHHHHHHHhcccccCCc-cccccccCchHHHHHhhcC----C----CCHHHHHHHHHHHHHh
Q 004074 522 KMISNSN-------S---HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKG----K----TEHQCKLDALHALYNL 582 (775)
Q Consensus 522 ~lL~s~~-------~---~~~AaaaL~~Ls~~~~~-k~~I~~~g~i~~LV~LL~~----~----~~~~~k~~Al~aL~nL 582 (775)
..+.+.- . +..++.+++|++..-.. +. .......+++++.. . .+.++.-.++.||.+|
T Consensus 139 ~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL 215 (253)
T 3gae_A 139 ETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 215 (253)
T ss_dssp HHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHH
Confidence 5442211 1 23355556788874221 11 13445566666652 1 2678888899999999
Q ss_pred cC
Q 004074 583 ST 584 (775)
Q Consensus 583 s~ 584 (775)
..
T Consensus 216 ~~ 217 (253)
T 3gae_A 216 AT 217 (253)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 214
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=39.50 E-value=18 Score=34.42 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=19.7
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004074 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
.+..+.||+|+.+..+ .-...||+|+.+-
T Consensus 135 ~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 135 IKKVYICPICGYTAVD--------------------EAPEYCPVCGAPK 163 (170)
T ss_dssp CSCEEECTTTCCEEES--------------------CCCSBCTTTCCBG
T ss_pred CCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCH
Confidence 3567889887766541 2345899999764
No 215
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=37.37 E-value=47 Score=31.56 Aligned_cols=74 Identities=18% Similarity=0.071 Sum_probs=56.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-hHhHHHHHHCCCHHHHHHhhhc------CChHHHHHHHHHHHHhHhc
Q 004074 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVN------GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~------g~~~~k~kA~~LL~~L~~~ 710 (775)
.++..|.+.|.++++.++-.|+.+|-.+..+. ......+.....+..|+.++.. .+..+|+++..++..-...
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999988887654 3455566666778888888752 3679999999998776654
Q ss_pred c
Q 004074 711 R 711 (775)
Q Consensus 711 ~ 711 (775)
-
T Consensus 130 f 130 (171)
T 1juq_A 130 L 130 (171)
T ss_dssp C
T ss_pred c
Confidence 3
No 216
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=36.57 E-value=88 Score=38.19 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCh-HHHHHcCcHHHHHHhccC-----CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHH
Q 004074 568 EHQCKLDALHALYNLSTIPSNI-PNLLSAGIISGLQSLAVP-----GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVS 641 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk-~~iv~aG~V~~Lv~LL~~-----~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~ 641 (775)
+...++.|+.++..++..-... ..-.-..+++.|+.+... ..+.++..+++++...+..-........ ..++
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~ 543 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVIL 543 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHH
Confidence 7889999999999987532211 111112244444443321 1233333466777766542111123332 4677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004074 642 GLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 642 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
.|+..|.+.++.++..|+.+|..+|..
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777788788899999999999999974
No 217
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=35.40 E-value=2.2e+02 Score=29.61 Aligned_cols=149 Identities=13% Similarity=0.039 Sum_probs=96.2
Q ss_pred chHHHHHhhcCC--C---CHHHHHHHHHHHHHhcCCCCChHHHHHc--CcHHHHHHhccCCChHHHHHHHHHHHHHhCC-
Q 004074 555 AVPFLVELCKGK--T---EHQCKLDALHALYNLSTIPSNIPNLLSA--GIISGLQSLAVPGDPMWTEKSLAVLLNLAAS- 626 (775)
Q Consensus 555 ~i~~LV~LL~~~--~---~~~~k~~Al~aL~nLs~~~~nk~~iv~a--G~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~- 626 (775)
.+.....++++| . +......|+..|..+|.+-.-..+|++. ..+..|+ +.......+++.|.++|...-.+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 344555666655 1 2345778888888888777767777763 2333333 22334567889999998876664
Q ss_pred cccHHHHhh-CCCcHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHH
Q 004074 627 AAGKEEMNS-TPGLVSGLATVLDT-------GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRG 696 (775)
Q Consensus 627 ~e~~~~i~~-~~g~I~~Lv~lL~~-------~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~ 696 (775)
|.....|.. .+..|..+..-|.. .+...+..-++||..|...+.... ..++..|..+..-. .+.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHH
Confidence 444444433 34566666655543 355677788999999998763221 44678888777777 9999
Q ss_pred HHHHHHHHHHhHh
Q 004074 697 RDKAQRLLMLFRE 709 (775)
Q Consensus 697 k~kA~~LL~~L~~ 709 (775)
|.++..++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999988766553
No 218
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=35.29 E-value=89 Score=28.89 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=55.7
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhh------cCChHHHHHHHHHHHHhHhc
Q 004074 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISV------NGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~------~g~~~~k~kA~~LL~~L~~~ 710 (775)
.++..|.+.|.+.++.++-.|+.+|-.+..+ .......+.....+..|+.++. ..+..+|++...++......
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999988887754 3345556666667788887775 35788999999888877654
No 219
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=32.71 E-value=3.9e+02 Score=26.69 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc-cC
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV-NN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~ 504 (775)
+.+..+...|...+..++|.-|+..|..+ .. ....++.+...+.. ...-.+++.++.++..++. .+
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~---D~~WrVre~lA~a~~~~~~~~~ 136 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSK---DNNWRVQEVLAKAFDEFCKKIE 136 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGG---CSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCC---CCCccHHHHHHHHHHHHHHhcC
Confidence 45666777676654678888888876655 21 12234444443332 2678999999999988863 22
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccC-chHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004074 505 NRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSH-AVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g-~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.+ ..++.+...+.+.+....-+++...+--....+ ...... +++.|-.+..+. +.=+++...++|..++
T Consensus 137 pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~-~k~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 137 YK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY-FKENPNEAIRRIADLKEDV-SEYVRKSVGNALRDIS 206 (240)
T ss_dssp TT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT-TTTCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch-hhcCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHh
Confidence 21 156778888888886444333333221111011 111122 445555555555 8889999999999998
Q ss_pred CCC
Q 004074 584 TIP 586 (775)
Q Consensus 584 ~~~ 586 (775)
-.+
T Consensus 207 K~~ 209 (240)
T 3l9t_A 207 KKF 209 (240)
T ss_dssp TTC
T ss_pred hhC
Confidence 644
No 220
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.42 E-value=13 Score=31.90 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=24.9
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004074 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
..||.|...|. + ..|+.+|..|=..+. -...||.|+++|.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~--~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIE--MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEE--EEEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhh--ccccCcchhhHHH
Confidence 79999998775 2 233333665522111 1347999999884
No 221
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.90 E-value=14 Score=27.32 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=11.4
Q ss_pred CCCCccccccccc
Q 004074 278 LPPEELRCPISLQ 290 (775)
Q Consensus 278 ~~p~~f~CPIs~~ 290 (775)
.+|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5799999999985
No 222
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.64 E-value=68 Score=35.06 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch-hHHHHhhCcHHHHH
Q 004074 443 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN-KELMLAAGVIPLLE 521 (775)
Q Consensus 443 ~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n-k~~i~~~G~i~~Lv 521 (775)
.+.-++..||.++.+.+.+ +.|..++ ........+..+.-++++|.|+ ..+... +..+.+......++
T Consensus 242 ~~FPaLDLLRl~v~~p~~~-------~~l~~li---~~~l~~~~~an~MltlR~laNl-F~~~~~g~~ll~~~~~~~~i~ 310 (425)
T 3pst_A 242 IKTPAYDIVRLIVKKLPYS-------SDIKDYI---EEGLGNKNITLTMLTVRILVNC-FNNENWGVKLLESNQVYKSIF 310 (425)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHH---HHHTTCSSHHHHHHHHHHHHHH-TTCTTTHHHHHTSHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCchH-------HHHHHHH---HHhcCCCChhHHHHHHHHHHHh-cCCcchHHHHhhCchhHHHHH
Confidence 4677888888888764422 2333333 3222235778889999999999 445553 44443333456666
Q ss_pred HHhccC----Ch------HHHHHHHHhcccccCCc-cccccccCchHHHHHhhc-----C---CCCHHHHHHHHHHHHHh
Q 004074 522 KMISNS----NS------HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCK-----G---KTEHQCKLDALHALYNL 582 (775)
Q Consensus 522 ~lL~s~----~~------~~~AaaaL~~Ls~~~~~-k~~I~~~g~i~~LV~LL~-----~---~~~~~~k~~Al~aL~nL 582 (775)
..+... .. +..++.+++|+|..-.. +. ....+..+++++. . ..+.++.-.++.||.+|
T Consensus 311 ~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtL 387 (425)
T 3pst_A 311 ETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 387 (425)
T ss_dssp HHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHH
Confidence 655321 11 23344555798874221 11 1244556777666 1 12788999999999999
Q ss_pred cC
Q 004074 583 ST 584 (775)
Q Consensus 583 s~ 584 (775)
..
T Consensus 388 v~ 389 (425)
T 3pst_A 388 AT 389 (425)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 223
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.49 E-value=1.4e+02 Score=27.59 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHH-HHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004074 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVA-LLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~-Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
.+.+..+..+|.+..+..+|..|+..|-.+.++. ...+..++...++.. |++++.... .....+++.++..|...+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~-~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKN-NPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTT-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHHHH
Confidence 4667777788974228999999999999999985 666777888899988 888885311 134688888888777765
No 224
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=28.86 E-value=3.3e+02 Score=27.20 Aligned_cols=114 Identities=6% Similarity=0.003 Sum_probs=76.8
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcC--CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH
Q 004074 554 HAVPFLVELCKGKTEHQCKLDALHALYNLST--IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~--~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~ 631 (775)
..++.+...+..+.+-.+++.++.++..++. +++ + .++.+...+.+++..++..|...+.--+..+.
T Consensus 103 ~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-~-------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~--- 171 (240)
T 3l9t_A 103 EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-K-------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY--- 171 (240)
T ss_dssp HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-T-------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT---
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-H-------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccch---
Confidence 4567776634333389999999999999984 333 1 56777788888898888877766543232211
Q ss_pred HHhhCC-CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC
Q 004074 632 EMNSTP-GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 632 ~i~~~~-g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 679 (775)
..... -.++.|-.+..+.+.-+|......|..+++.+++.....++.
T Consensus 172 -~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 172 -FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp -TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred -hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 11111 234444445556788899999999999999988877766654
No 225
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=28.70 E-value=4.3e+02 Score=32.74 Aligned_cols=221 Identities=14% Similarity=0.059 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc--
Q 004074 427 RYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-- 503 (775)
Q Consensus 427 ~i~~Ll~~L~s~-~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-- 503 (775)
.+..++..+.++ .+.+.|.+|-..|..+-+.. .+...+...|.+ .+.+..++..|+..|.|....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~--~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAE--KTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHhc
Confidence 355555554443 25567888888887764432 233344443431 125788888898888886421
Q ss_pred ---CCchhHHHHhhCcHHHHHHHhcc---CCh--HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHH
Q 004074 504 ---NNRNKELMLAAGVIPLLEKMISN---SNS--HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLD 574 (775)
Q Consensus 504 ---~~~nk~~i~~~G~i~~Lv~lL~s---~~~--~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~ 574 (775)
.++.|. .++...+..+...-.. ... +...+.++..++..+-- .. .+.++.|+.++..+ ...++.
T Consensus 80 ~~l~~e~k~-~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~~--~~~~e~ 152 (1204)
T 3a6p_A 80 NGMSRLEKV-YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQG--ETQTEL 152 (1204)
T ss_dssp GGSCHHHHH-HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHTC--HHHHHH
T ss_pred ccCCHHHHH-HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcCC--HHHHHH
Confidence 122233 2334445444433211 122 23344444444433211 11 57889999998764 566888
Q ss_pred HHHHHHHhcCC---CCC----hHH-----HHHc--CcHHHHHHhccC-------------------CChHHHHHHHHHHH
Q 004074 575 ALHALYNLSTI---PSN----IPN-----LLSA--GIISGLQSLAVP-------------------GDPMWTEKSLAVLL 621 (775)
Q Consensus 575 Al~aL~nLs~~---~~n----k~~-----iv~a--G~V~~Lv~LL~~-------------------~~~~i~e~al~~L~ 621 (775)
++.+|..|+.. .+. |.. +.+. .+++.+..++.+ .+..+...++.+|.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 99999888632 111 111 1111 122333333322 11234455555555
Q ss_pred HHhCCcccHHHHhhCC-CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004074 622 NLAASAAGKEEMNSTP-GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~-g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
+.... ..-..+.... ..+..+..++. ++..+..|+.+|..++...
T Consensus 233 ~~l~W-i~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 233 GYIDW-VSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTTT-SCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHhc-cCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 44432 1222333321 25666665554 5778999999999998743
No 226
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=27.67 E-value=30 Score=30.63 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=38.5
Q ss_pred CCccccccccccccC-ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYD-PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~d-PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
|+-|.|..|...+.+ +....-|..||+.+..+-+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 567999999998876 5667889999999977654 4589999998764
No 227
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=27.06 E-value=21 Score=27.04 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q 004074 278 LPPEELRCPISLQ 290 (775)
Q Consensus 278 ~~p~~f~CPIs~~ 290 (775)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 5799999999985
No 228
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.57 E-value=19 Score=27.50 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=11.6
Q ss_pred CCCCccccccccc
Q 004074 278 LPPEELRCPISLQ 290 (775)
Q Consensus 278 ~~p~~f~CPIs~~ 290 (775)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999985
No 229
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.35 E-value=63 Score=34.58 Aligned_cols=128 Identities=17% Similarity=0.153 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc-hhHHHHhhCcHHHHH
Q 004074 443 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR-NKELMLAAGVIPLLE 521 (775)
Q Consensus 443 ~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~-nk~~i~~~G~i~~Lv 521 (775)
.+.-++..+|.++.+.+. ++.|..++. .......+..+.-++++|.|+ ..+.. .+..+.+......++
T Consensus 179 ~~FP~LDLLRl~v~~~~~-------~~~l~~li~---~~~~~~~~~n~MltlR~laNl-F~~~~~g~~ll~~~~~~~~i~ 247 (362)
T 3l3f_X 179 IKTPAYDIVRLIVKKLPY-------SSDIKDYIE---EGLGNKNITLTMLTVRILVNC-FNNENWGVKLLESNQVYKSIF 247 (362)
T ss_dssp CCHHHHHHHHHHGGGCSC-------GGGGHHHHH---HHTTCSSHHHHHHHHHHHHHH-TTCTTTHHHHHTSHHHHTTHH
T ss_pred ccchHHHHHHHHhcCCCh-------HHHHHHHHH---HhcCCCChhHHHHHHHHHHHh-ccCcchHHHHHhcchhHHHHH
Confidence 477788888888876442 233433332 222235678889999999999 44555 344443322344445
Q ss_pred HHhcc----CCh------HHHHHHHHhcccccCCc-cccccccCchHHHHHhhc-----C---CCCHHHHHHHHHHHHHh
Q 004074 522 KMISN----SNS------HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCK-----G---KTEHQCKLDALHALYNL 582 (775)
Q Consensus 522 ~lL~s----~~~------~~~AaaaL~~Ls~~~~~-k~~I~~~g~i~~LV~LL~-----~---~~~~~~k~~Al~aL~nL 582 (775)
..+.. ... +..++.+++|+|..-.. +.. ...+..+++++. . ..+.++.-.++.||.+|
T Consensus 248 ~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL 324 (362)
T 3l3f_X 248 ETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 324 (362)
T ss_dssp HHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHH
Confidence 54421 121 23344555788874221 111 344556777766 2 12788999999999999
Q ss_pred cC
Q 004074 583 ST 584 (775)
Q Consensus 583 s~ 584 (775)
..
T Consensus 325 ~~ 326 (362)
T 3l3f_X 325 AT 326 (362)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 230
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.33 E-value=38 Score=29.95 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=40.7
Q ss_pred CCccccccccccccC---ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 280 p~~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l 332 (775)
|+-|+|..|...+.| .....-|..||+.+..+-|.. ...|-.|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 466999999999974 566788999999999887743 2379999988875443
No 231
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=25.26 E-value=9.9e+02 Score=29.14 Aligned_cols=218 Identities=16% Similarity=0.088 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc---
Q 004074 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV--- 502 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~--- 502 (775)
..+..++..+-++ +.+.|.+|-..|..+-+. .++...+..+|... .++.++.-|+.+|.+...
T Consensus 28 ~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s---~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 28 NLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFS---QNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp HHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---C---CSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhhh
Q ss_pred -cCCchhHHHHhhCcHHHHHHHhccC-----Ch--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHH
Q 004074 503 -NNNRNKELMLAAGVIPLLEKMISNS-----NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLD 574 (775)
Q Consensus 503 -~~~~nk~~i~~~G~i~~Lv~lL~s~-----~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~ 574 (775)
.-+.....-++...+..+...-.++ +. ....+.++..++..+--..- .+.++-|+.++..+ +.....
T Consensus 94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W---p~fi~dLv~~~~~~--~~~~~~ 168 (1073)
T 3gjx_A 94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW---PTFISDIVGASRTS--ESLCQN 168 (1073)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC---TTHHHHHHHHHHHC--HHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc---cHHHHHHHHHhCCC--HHHHHH
Q ss_pred HHHHHHHhcCCCCC--------------hHHHHHcCcHHHHHHhc-----cCCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004074 575 ALHALYNLSTIPSN--------------IPNLLSAGIISGLQSLA-----VPGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 575 Al~aL~nLs~~~~n--------------k~~iv~aG~V~~Lv~LL-----~~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
.+..|..|+..-.. +..+.+. ++.++.++ ...+..+...++.+|..+.+.- .-..+..
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI-~i~~i~~ 245 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI-PLGYIFE 245 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHHHHS
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc-CHHHhcc
Q ss_pred CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004074 636 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
+ +.+..|+ .-.-.++..++.|+.+|..+.+
T Consensus 246 ~-~ll~~L~-~~~L~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 246 T-KLISTLI-YKFLNVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp S-SHHHHHH-HHTSSSHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHH-HHhcCChHHHHHHHHHHHHHHh
No 232
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=25.22 E-value=6.8e+02 Score=30.18 Aligned_cols=215 Identities=13% Similarity=0.019 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHh-hccC----chHHHHHHhchhcc-CCCHHHHHHHHHHHHHhhccCCchhHHHHh
Q 004074 440 NLGQKCNIVEQIRLLLKDDEEARVFT-GANG----FVVALLRFLESAVC-ERNSYAQEIGAMALFNLAVNNNRNKELMLA 513 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i-~~~G----~I~~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~ 513 (775)
+|.....|+..|..++..-..+-..+ .+.. .++.|+.++.+... ...+.++..+++++...+..-.. .
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~ 529 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------E 529 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------C
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------C
Confidence 68888899999998886533222211 1122 33444445443221 25688999999999888642221 2
Q ss_pred hCcHHHHHHHhcc--C----Ch--HHHHHHHHhcccccCCccccccccCchHHHHHhh----cCC----CCH--------
Q 004074 514 AGVIPLLEKMISN--S----NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC----KGK----TEH-------- 569 (775)
Q Consensus 514 ~G~i~~Lv~lL~s--~----~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL----~~~----~~~-------- 569 (775)
...+++++..+-+ | +. +..|+.++.+++.. ++..+. .-++.++..+ ... .+.
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~--~~~~L~--~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS--IKKQVV--NYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH--TTTTCS--SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH--hhHHhh--hHHHHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 3566776666644 2 22 46677777777753 334443 3344444443 311 011
Q ss_pred --------HHHHHHHHHHHHhc---CCC-CChHHHHHcCcHHHHHHhc----cC---C-ChH-HHHHHHHHHHHHhCCcc
Q 004074 570 --------QCKLDALHALYNLS---TIP-SNIPNLLSAGIISGLQSLA----VP---G-DPM-WTEKSLAVLLNLAASAA 628 (775)
Q Consensus 570 --------~~k~~Al~aL~nLs---~~~-~nk~~iv~aG~V~~Lv~LL----~~---~-~~~-i~e~al~~L~nLa~~~e 628 (775)
+-+-....++..|. ..+ +.+...++ .++++|+.-+ .. + +.. -....+.+|..++..-.
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~ 684 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFP 684 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSC
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCC
Confidence 12222333444443 322 23444433 3556655532 22 1 111 12345666677765321
Q ss_pred c-------HHHHhhCCCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Q 004074 629 G-------KEEMNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 629 ~-------~~~i~~~~g~I~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~ 667 (775)
. ...+.. .+.+.+...+. ..+..+++.+..++..+-.
T Consensus 685 ~~~~~~~p~~~~f~--~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 685 ARGSEEVAWLASFN--KASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp SCC-CCCSHHHHHH--HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred cccCCCCcHHHHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 1 122221 23445555555 4678899999888877654
No 233
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.91 E-value=1.1e+02 Score=30.38 Aligned_cols=73 Identities=10% Similarity=0.056 Sum_probs=53.4
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHHHhHhc
Q 004074 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~ 710 (775)
.++..|.+.|.+.++.++-.|+.+|-.+..+ .......+.....+..|+.++.. ....+|+++..++......
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999988887754 33345555555566667666544 5678999999999877644
No 234
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=24.41 E-value=5.3e+02 Score=31.45 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=81.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchh---ccCCCHHHHHHHHHHHHHhhccCCch
Q 004074 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESA---VCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 431 Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~---~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+...+..+ +.+.+.-++++|+++... ..++.|.++|... ..+....++..|+++|.+++...+ .
T Consensus 445 l~~~~~~~-~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-~ 511 (1056)
T 1lsh_A 445 LSQSSDRA-KEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-R 511 (1056)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-H
T ss_pred HHHHHhcC-ChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-H
Confidence 33455555 777788888888887642 4577788887531 112346788999999999975211 1
Q ss_pred hHHHHhhCcHHHHHHHhccCC--hHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004074 508 KELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~--~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
+ +-+.+..++.+.. .....+|.+..+-..+. ...+..++..+..+.+.++..-....|.+|+..
T Consensus 512 ~-------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 512 K-------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp H-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred H-------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 1 2345667764433 22333333322322221 245677888888766999999999999999865
Q ss_pred CC
Q 004074 586 PS 587 (775)
Q Consensus 586 ~~ 587 (775)
..
T Consensus 578 ~~ 579 (1056)
T 1lsh_A 578 SN 579 (1056)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 235
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.42 E-value=24 Score=26.70 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=11.5
Q ss_pred CCCCccccccccc
Q 004074 278 LPPEELRCPISLQ 290 (775)
Q Consensus 278 ~~p~~f~CPIs~~ 290 (775)
.+|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5799999999975
No 236
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.25 E-value=26 Score=29.11 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=12.1
Q ss_pred CCCCcccccccccc
Q 004074 278 LPPEELRCPISLQL 291 (775)
Q Consensus 278 ~~p~~f~CPIs~~~ 291 (775)
.+|+++.||+|+.-
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 68999999999863
No 237
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.59 E-value=25 Score=26.96 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=11.5
Q ss_pred CCCCccccccccc
Q 004074 278 LPPEELRCPISLQ 290 (775)
Q Consensus 278 ~~p~~f~CPIs~~ 290 (775)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5799999999985
No 238
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.47 E-value=1.2e+02 Score=24.95 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=31.0
Q ss_pred CccccccccccccCceecCC----CCccchHHHHHHHhc----CCCCCCC
Q 004074 281 EELRCPISLQLMYDPVIIAS----GQTYERICIEKWLSD----GHSTCPK 322 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~----G~ty~r~~I~~w~~~----~~~~CP~ 322 (775)
..++|-+|.+-+.|--.+.| +|.||--|-...+.. +.-.||-
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 56899999999999877644 799997776666542 2335665
No 239
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.90 E-value=28 Score=28.04 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=12.0
Q ss_pred CCCCcccccccccc
Q 004074 278 LPPEELRCPISLQL 291 (775)
Q Consensus 278 ~~p~~f~CPIs~~~ 291 (775)
.+|+++.||+|..-
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 58999999999863
No 240
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.38 E-value=59 Score=28.81 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=39.0
Q ss_pred CCcccccccccccc---CceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004074 280 PEELRCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~---dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
|+-|.|..|...+. .+....-|..||+.+..+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 57899999999996 3677789999999998776632 2379999988754
No 241
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=20.01 E-value=1.2e+02 Score=24.92 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=11.7
Q ss_pred CCccccccccccccCc
Q 004074 280 PEELRCPISLQLMYDP 295 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP 295 (775)
...|.|++|...|...
T Consensus 15 ~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCBCSSSCCBCSSH
T ss_pred CcCeECCCCCCccCCH
Confidence 3569999988877643
Done!