Query 004076
Match_columns 775
No_of_seqs 362 out of 2480
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 17:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 2E-138 4E-143 1222.4 72.7 750 3-771 24-881 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 5E-114 1E-118 1018.2 72.3 704 13-755 13-830 (831)
3 COG0308 PepN Aminopeptidase N 100.0 6.7E-89 1.4E-93 803.3 64.1 725 9-758 12-857 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 4.8E-84 1E-88 751.0 69.4 507 11-550 4-540 (863)
5 PRK14015 pepN aminopeptidase N 100.0 2.1E-83 4.5E-88 748.2 68.8 507 11-549 16-551 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 4.6E-77 1E-81 676.2 41.1 427 9-465 6-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 8.3E-75 1.8E-79 640.4 38.0 385 9-395 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 6.4E-55 1.4E-59 455.3 27.5 427 11-461 13-458 (613)
9 KOG1932 TATA binding protein a 100.0 3.9E-35 8.4E-40 328.3 34.3 428 16-465 27-506 (1180)
10 PF11838 ERAP1_C: ERAP1-like C 100.0 1.4E-33 3E-38 303.7 17.6 190 554-748 125-324 (324)
11 COG3975 Predicted protease wit 99.3 1.8E-10 4E-15 122.5 20.7 240 231-475 181-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 4.6E-11 1E-15 109.5 6.6 106 299-418 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.5 0.003 6.5E-08 66.9 16.2 143 298-455 136-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.3 0.00012 2.6E-09 64.9 2.4 43 301-343 4-57 (122)
15 PF07607 DUF1570: Protein of u 95.8 0.005 1.1E-07 55.3 2.2 38 303-341 3-43 (128)
16 PF11940 DUF3458: Domain of un 95.7 0.42 9.1E-06 51.6 16.6 73 468-549 6-85 (367)
17 PF04450 BSP: Peptidase of pla 95.3 0.28 6.1E-06 48.3 12.4 171 236-450 26-204 (205)
18 PF10026 DUF2268: Predicted Zn 93.1 0.38 8.3E-06 47.3 8.1 100 239-345 4-113 (195)
19 PRK04860 hypothetical protein; 89.6 0.86 1.9E-05 42.9 6.1 70 236-314 5-76 (160)
20 PF13646 HEAT_2: HEAT repeats; 85.5 3 6.5E-05 34.6 6.7 75 558-644 14-88 (88)
21 PF01863 DUF45: Protein of unk 85.0 5.8 0.00013 39.2 9.6 92 235-353 109-200 (205)
22 COG4324 Predicted aminopeptida 83.9 1.1 2.4E-05 44.5 3.5 40 299-344 195-234 (376)
23 PF03272 Enhancin: Viral enhan 82.1 57 0.0012 39.2 17.5 129 303-451 238-377 (775)
24 smart00731 SprT SprT homologue 81.8 1.2 2.6E-05 41.5 2.9 65 242-315 5-73 (146)
25 PF10023 DUF2265: Predicted am 81.2 1.3 2.9E-05 46.6 3.2 39 300-344 164-202 (337)
26 PF12725 DUF3810: Protein of u 70.6 5 0.00011 42.7 4.2 32 301-344 196-227 (318)
27 PF12315 DUF3633: Protein of u 64.1 10 0.00022 36.9 4.4 41 301-343 93-133 (212)
28 PF01447 Peptidase_M4: Thermol 63.3 10 0.00022 35.4 4.2 74 231-312 67-146 (150)
29 PF01435 Peptidase_M48: Peptid 62.5 6 0.00013 39.6 2.8 70 242-320 35-108 (226)
30 COG4783 Putative Zn-dependent 60.6 8.4 0.00018 42.3 3.5 56 256-316 90-145 (484)
31 COG2719 SpoVR Uncharacterized 60.5 59 0.0013 35.4 9.5 55 299-359 247-301 (495)
32 PF04234 CopC: CopC domain; I 57.5 91 0.002 26.5 8.8 63 44-109 17-82 (97)
33 PF10989 DUF2808: Protein of u 55.9 33 0.00072 31.8 6.3 47 73-120 76-122 (146)
34 PRK04351 hypothetical protein; 55.0 12 0.00026 34.8 3.1 16 298-313 58-73 (149)
35 PF06114 DUF955: Domain of unk 54.6 12 0.00025 32.9 3.0 18 301-318 42-59 (122)
36 PF10263 SprT-like: SprT-like 54.0 22 0.00048 33.3 4.9 18 298-315 57-74 (157)
37 PF13646 HEAT_2: HEAT repeats; 53.8 38 0.00082 27.7 5.8 62 597-662 13-74 (88)
38 PRK05457 heat shock protein Ht 46.8 35 0.00075 35.7 5.4 68 240-316 79-149 (284)
39 COG1451 Predicted metal-depend 46.6 1.2E+02 0.0026 30.5 8.9 93 234-353 119-211 (223)
40 PRK03001 M48 family peptidase; 46.5 33 0.00072 35.9 5.3 68 240-316 69-139 (283)
41 COG0501 HtpX Zn-dependent prot 45.4 31 0.00068 36.2 5.0 68 244-319 105-175 (302)
42 COG3227 LasB Zinc metalloprote 44.2 21 0.00046 39.2 3.3 110 228-344 266-381 (507)
43 cd04269 ZnMc_adamalysin_II_lik 43.7 71 0.0015 31.1 6.9 14 300-313 130-143 (194)
44 PRK03982 heat shock protein Ht 43.7 45 0.00097 35.0 5.7 66 240-316 70-140 (288)
45 PF13699 DUF4157: Domain of un 43.1 37 0.00081 27.8 3.9 63 243-313 6-73 (79)
46 PRK01345 heat shock protein Ht 42.9 49 0.0011 35.2 5.9 68 240-316 69-139 (317)
47 PF10805 DUF2730: Protein of u 42.0 1E+02 0.0022 26.9 6.7 42 684-727 2-43 (106)
48 PF08325 WLM: WLM domain; Int 41.7 17 0.00037 35.2 2.1 23 295-317 76-98 (186)
49 PRK04897 heat shock protein Ht 41.3 55 0.0012 34.5 6.0 68 240-316 82-152 (298)
50 PF07539 DRIM: Down-regulated 40.8 2.6E+02 0.0055 25.8 9.5 96 557-661 30-139 (141)
51 cd04279 ZnMc_MMP_like_1 Zinc-d 40.7 1E+02 0.0022 28.8 7.2 37 219-255 2-41 (156)
52 PRK03072 heat shock protein Ht 40.3 50 0.0011 34.6 5.4 69 239-316 71-142 (288)
53 COG2372 CopC Uncharacterized p 39.4 86 0.0019 28.1 5.8 60 47-109 47-110 (127)
54 PF13574 Reprolysin_2: Metallo 38.6 20 0.00043 34.4 2.0 13 301-313 111-123 (173)
55 PHA02456 zinc metallopeptidase 36.8 23 0.0005 30.4 1.8 15 300-314 78-92 (141)
56 PRK02391 heat shock protein Ht 36.7 66 0.0014 33.9 5.6 68 240-316 78-148 (296)
57 PF04597 Ribophorin_I: Ribopho 36.6 3.4E+02 0.0074 30.3 11.5 86 24-109 10-103 (432)
58 PRK09687 putative lyase; Provi 36.5 2.7E+02 0.0059 29.0 10.2 98 556-662 66-171 (280)
59 PRK02870 heat shock protein Ht 36.1 69 0.0015 34.3 5.7 64 241-312 118-184 (336)
60 PRK09687 putative lyase; Provi 35.7 4E+02 0.0086 27.8 11.3 93 558-661 142-234 (280)
61 PF05596 Taeniidae_ag: Taeniid 33.4 1.4E+02 0.0031 23.3 5.4 49 717-769 12-60 (64)
62 COG3091 SprT Zn-dependent meta 32.4 59 0.0013 30.0 3.8 14 299-312 59-72 (156)
63 PRK10301 hypothetical protein; 32.0 2.7E+02 0.0058 25.0 8.0 26 84-109 84-109 (124)
64 PRK01265 heat shock protein Ht 31.9 87 0.0019 33.4 5.6 66 241-315 86-154 (324)
65 PF08014 DUF1704: Domain of un 31.7 2.2E+02 0.0048 30.7 8.7 84 242-340 117-213 (349)
66 KOG2062 26S proteasome regulat 31.1 1.8E+02 0.0039 34.1 8.0 121 557-686 499-628 (929)
67 smart00638 LPD_N Lipoprotein N 30.4 2E+02 0.0043 33.5 8.9 96 561-662 463-560 (574)
68 cd04272 ZnMc_salivary_gland_MP 29.7 1.2E+02 0.0026 30.3 6.0 13 301-313 145-157 (220)
69 PF12174 RST: RCD1-SRO-TAF4 (R 29.3 1.3E+02 0.0028 24.0 4.8 47 395-442 11-57 (70)
70 TIGR02270 conserved hypothetic 29.1 2.1E+02 0.0046 31.6 8.2 95 555-662 158-252 (410)
71 PF14524 Wzt_C: Wzt C-terminal 28.9 1.7E+02 0.0036 26.3 6.5 25 83-107 83-107 (142)
72 PF13934 ELYS: Nuclear pore co 28.7 4.9E+02 0.011 26.1 10.2 94 595-694 74-170 (226)
73 PF01347 Vitellogenin_N: Lipop 28.3 3E+02 0.0066 32.3 10.1 99 558-662 504-604 (618)
74 PF12069 DUF3549: Protein of u 28.1 1.6E+02 0.0034 31.5 6.6 53 616-668 213-266 (340)
75 PF01431 Peptidase_M13: Peptid 27.6 48 0.001 32.6 2.7 33 287-319 22-54 (206)
76 PF03715 Noc2: Noc2p family; 27.4 1.3E+02 0.0029 31.6 6.1 50 721-770 227-284 (299)
77 PF06483 ChiC: Chitinase C; I 27.1 2.3E+02 0.0049 27.1 6.7 30 84-113 114-146 (180)
78 PF01421 Reprolysin: Reprolysi 26.8 83 0.0018 30.8 4.2 14 299-312 129-142 (199)
79 cd08330 CARD_ASC_NALP1 Caspase 26.3 3.1E+02 0.0066 22.6 6.8 39 685-726 1-40 (82)
80 PF09836 DUF2063: Uncharacteri 24.9 40 0.00086 28.5 1.3 31 401-431 54-84 (94)
81 PF14734 DUF4469: Domain of un 24.9 2.8E+02 0.0061 24.0 6.5 27 83-109 61-89 (102)
82 PF15641 Tox-MPTase5: Metallop 24.7 1.2E+02 0.0027 24.8 3.9 18 299-316 62-80 (109)
83 PF09768 Peptidase_M76: Peptid 24.1 1.9E+02 0.0041 27.7 5.8 26 297-322 67-92 (173)
84 PF00046 Homeobox: Homeobox do 23.7 3E+02 0.0065 20.3 6.0 21 716-736 7-27 (57)
85 COG2856 Predicted Zn peptidase 23.7 2.1E+02 0.0047 28.4 6.3 39 301-339 72-115 (213)
86 PF13688 Reprolysin_5: Metallo 22.5 51 0.0011 32.1 1.8 15 299-313 140-154 (196)
87 PF12854 PPR_1: PPR repeat 22.2 1.4E+02 0.0031 19.6 3.4 22 562-586 11-32 (34)
88 PF13205 Big_5: Bacterial Ig-l 21.3 5E+02 0.011 21.8 8.3 26 83-108 59-85 (107)
89 PF13402 M60-like: Peptidase M 21.2 1.4E+02 0.0031 31.4 5.0 106 233-346 145-259 (307)
90 PF08766 DEK_C: DEK C terminal 20.6 1.1E+02 0.0023 22.9 2.7 39 408-446 2-40 (54)
91 PF09087 Cyc-maltodext_N: Cycl 20.4 3.2E+02 0.0069 23.0 5.7 25 82-106 45-70 (88)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-138 Score=1222.40 Aligned_cols=750 Identities=50% Similarity=0.824 Sum_probs=687.2
Q ss_pred ccCCCCCCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEeEeeeccCCCCccccCeeEEEe
Q 004076 3 EFKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELV 82 (775)
Q Consensus 3 ~~~~~~rLp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~ 82 (775)
++...+|||++++|+||+|.|.+++....|.|++.|.+++.++++.|+||+.+++|.++.+...................
T Consensus 24 ~~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 103 (882)
T KOG1046|consen 24 KFPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKE 103 (882)
T ss_pred cccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccc
Confidence 34467999999999999999999999999999999999999999999999999999999986532211111111111111
Q ss_pred cCCeEEEEEeCCCcCCc-eEEEEEEEEeccCCCCcceEEEeecc-CCeeeeccccCCCCCCCCceeeccCCCCCeeEEEE
Q 004076 83 EADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKI 160 (775)
Q Consensus 83 ~~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l 160 (775)
.. +.+.+.+++++.+| .|+|+|.|.|.+++++.|||+++|.+ .+..+++++|||||++||++|||||||++||+|+|
T Consensus 104 ~~-~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~I 182 (882)
T KOG1046|consen 104 QE-ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTI 182 (882)
T ss_pred cc-eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEE
Confidence 11 67888898999999 79999999999999999999999987 46668999999999999999999999999999999
Q ss_pred EEEECCCCeEeeCCCccce-eecCceEEEEEeeCCCCcceEEEEEEeeeeEEeecccCCeEEEEEEeCCccchHHHHHHH
Q 004076 161 TLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNV 239 (775)
Q Consensus 161 ~i~~p~~~~~isn~~~~~~-~~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~ 239 (775)
+|.||++++|+|||++.++ ..++++++++|++||+||||++||+||+|+..+..+.+|+++++|++|+...+.+++++.
T Consensus 183 tl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~ 262 (882)
T KOG1046|consen 183 TLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEV 262 (882)
T ss_pred EEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHH
Confidence 9999999999999999876 444559999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCccC
Q 004076 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (775)
Q Consensus 240 ~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (775)
+.++|++|+++||+|||+||+|+|++|+|..|||||||||+|++..+|+++..++..++++++.+||||+|||||||+||
T Consensus 263 ~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVT 342 (882)
T KOG1046|consen 263 ATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVT 342 (882)
T ss_pred HHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhHHhhhHHHHHHHHHHhhhCCchhHHHHHHHHHH-HHhhhcccCCCCCeEeecCCcchhhhcccchhcchhhHH
Q 004076 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 398 (775)
Q Consensus 320 ~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~v 398 (775)
|+||+|+|||||||+|+++++++..+|+|..+++++...+ .++..|+..++||+..++.++.++++.||.++|.||++|
T Consensus 343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv 422 (882)
T KOG1046|consen 343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV 422 (882)
T ss_pred HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999887777 579999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCcEEEEEEEeecc
Q 004076 399 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLS 478 (775)
Q Consensus 399 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~~l~~~~~~W~~~~g~P~~~v~~~~~~~~l~Q~rf~~ 478 (775)
||||+.++|++.|++||+.||.+|+|+|++++|||++|+...+.|++++|+.|+.|+|||+|+|.++++.++++|+||..
T Consensus 423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~ 502 (882)
T KOG1046|consen 423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS 502 (882)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CCC--CCCCeEEEEEEEEeccccceeeeEeeccceEEEecccccccccCCCCCCceEEEccCceEEEEEecchhhHH---
Q 004076 479 SGS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAA--- 553 (775)
Q Consensus 479 ~~~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyrV~Yd~~~w~--- 553 (775)
... ....+|+||++|.+...+....+++..++..+.++. ++ +||++|.++.|||||+||.++|.
T Consensus 503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~ 571 (882)
T KOG1046|consen 503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLI 571 (882)
T ss_pred CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHH
Confidence 654 334699999999887665445678887777777753 34 69999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 004076 554 -------------------------------------------------------------------------------- 553 (775)
Q Consensus 554 -------------------------------------------------------------------------------- 553 (775)
T Consensus 572 ~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 651 (882)
T KOG1046|consen 572 EQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHSLEDTEIYSKFKEFVKKL 651 (882)
T ss_pred HHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence
Q ss_pred --------------HH-HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhhcccCCHH
Q 004076 554 --------------SH-LDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRS 618 (775)
Q Consensus 554 --------------~~-~~~~~R~~ll~~ac~~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~~~~~~~~g~~~ 618 (775)
.+ .+..+|..++..||..|+++|+..|..+|++|+.. +..+|+++|. .+||.++++|+++
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~---~vy~~~~~~g~~~ 726 (882)
T KOG1046|consen 652 ILPIFEKLGWSDGADSSLDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLRE---VVYCTAVQFGTEE 726 (882)
T ss_pred HHHHHHHhcCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhh---hhhhHHHHhcCHh
Confidence 11 34679999999999999999999999999999987 7789999999 5566677899999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhcc-Ccccccceeeeee-Eccc--cHHHHHHHHHHHHHHH
Q 004076 619 GYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA-VSIE--GRETAWKWLKDNWDHI 694 (775)
Q Consensus 619 ~~~~l~~~y~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~-~~ir~qd~~~~~~-v~~~--g~~~~w~fl~~n~~~i 694 (775)
.|++++++|+++.++.||..++.||+|+++++.++++|++.++ +.++.||...++. ++.| |..+||+|+++||+.+
T Consensus 727 ~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n~~~l 806 (882)
T KOG1046|consen 727 DWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDNWKEL 806 (882)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 4799999999999 8777 9999999999999999
Q ss_pred HHHhCCCcchhHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhhh
Q 004076 695 SKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELA 771 (775)
Q Consensus 695 ~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wl~~~~ 771 (775)
.++|++.+.+.+++..+++.+.++.+++++++||...+..+..+++++++|.++.|+.|.+++... +.+||.+..
T Consensus 807 ~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~--l~~~l~~~~ 881 (882)
T KOG1046|consen 807 LNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWVERNEEN--LTQWLLEAL 881 (882)
T ss_pred HHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHH--HHHHHHHhc
Confidence 999995578999999999999999999999999999877667999999999999999999999988 999998753
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=5.2e-114 Score=1018.24 Aligned_cols=704 Identities=24% Similarity=0.358 Sum_probs=585.5
Q ss_pred CceeeEEEEEEEecCCCC--eEEEEEEEEEEEECCCCEEEEEeCCceeeEeEeeeccCCCCccccCeeEEEecCCeEEEE
Q 004076 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (775)
Q Consensus 13 ~v~p~~Y~l~l~~~~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (775)
.+.+.||+|.|+++.+.. ++.|+++|++++.++++.|.||+.+++|++|++++. .......++ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999876554 558999999999888999999999999999998641 111122222 346
Q ss_pred EeCCCcCCceEEEEEEEEeccCCCCcceEEEeeccCCeeeeccccCCCCCCCCceeeccCCCCCeeEEEEEEEECCCCeE
Q 004076 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (775)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~~~~ 170 (775)
.++. |.+|.++|+|.|.+.+++.+.|+|+..+..+| +++++|||||.+||+||||||+|++||+|+++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g--~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDG--EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCC--eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6665 77888999999999999999999986554445 37789999999999999999999999999999999999999
Q ss_pred eeCCCccceeecCceEEEEEeeCCCCcceEEEEEEeeeeEEeecccCCeEEEEEEeCCccch--HHHHHHHHHHHHHHHH
Q 004076 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (775)
Q Consensus 171 isn~~~~~~~~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (775)
+|||++.+....++.++++|+.|||||+|++||++|+|+.++. ..+|+++++|++|+..+. ++++++.+.++|++|+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987765556677899999999999999999999999874 357899999999987654 5789999999999999
Q ss_pred HHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCccCcCccchhHH
Q 004076 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (775)
Q Consensus 249 ~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL 328 (775)
++||+|||++|+|+|++|+|..|||||||+|+|++. +++.+. .+...++.++.+||||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555544 335567788999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhCCchhHHHHHHHHHH-HHhhhcccCCCCCeEeecCCcchhhhcccchhcchhhHHHHHHHHhhC
Q 004076 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 407 (775)
Q Consensus 329 ~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG 407 (775)
|||||+|++++++++.+|++..+..|..... .++..|+..++||+..++.++.++...|+.++|.||++||+||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999999888888876554 668889999999999999898888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEe--CcEEE-EEEEeeccCCCCCC
Q 004076 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK--EEKLE-LEQSQFLSSGSPGD 484 (775)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~~l~~~~~~W~~~~g~P~~~v~~~--~~~~~-l~Q~rf~~~~~~~~ 484 (775)
++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++++|+|+|+|+++ ++.+. +.|.+ .+ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 9999999999999999999999999999999999999999999999999999999875 34444 22221 11 12
Q ss_pred CeEEEEEEEEecccccee-----eeEeeccceEEEecccccccccCCCCCCceEEEccCceEEEEEecchhhHH------
Q 004076 485 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAA------ 553 (775)
Q Consensus 485 ~~w~iPl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyrV~Yd~~~w~------ 553 (775)
..|+|||.+....+.... .+.+...... ++... ....+ +||++|.++.|||||+||+.+|.
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 469999998654332111 1333332221 21100 11234 79999999999999999999997
Q ss_pred ------------------------------------------------------H-HH----------------------
Q 004076 554 ------------------------------------------------------S-HL---------------------- 556 (775)
Q Consensus 554 ------------------------------------------------------~-~~---------------------- 556 (775)
. ..
T Consensus 542 ~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (831)
T TIGR02412 542 SKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAPIADRPALLAVAALACR 621 (831)
T ss_pred hhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1 00
Q ss_pred ----------HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhhcccCCHHHHHHHHHH
Q 004076 557 ----------DALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRV 626 (775)
Q Consensus 557 ----------~~~~R~~ll~~ac~~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~ 626 (775)
+.++ ..+..++|..|+++|++.++++|..|+++ ..||||+|..||++ +++ |+.++|+.|+++
T Consensus 622 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~---~~~-~~~~~~~~l~~~ 693 (831)
T TIGR02412 622 SLRRAMESGPDFQL-RWLRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIAR---LAA-LGFIDADDIAAE 693 (831)
T ss_pred HHHhccCCCccHHH-HHHHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHH---HHh-cCCCCHHHHHHH
Confidence 0111 12334599999999999999999988654 36999999966553 343 577889999999
Q ss_pred HHcCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhccC-cccccceeeeee-Eccc-cHHHHHHHHHHHHHHHHHHhCC-Cc
Q 004076 627 YRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGS-GF 702 (775)
Q Consensus 627 y~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~-~ir~qd~~~~~~-v~~~-g~~~~w~fl~~n~~~i~~~~~~-~~ 702 (775)
|++++++.+|..++.||||++|++++++.+...+.+ .++.||...++. ++.. |+.++|+|+++||+.|.++++. +.
T Consensus 694 ~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 773 (831)
T TIGR02412 694 LERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFANLADIWKRRGP 773 (831)
T ss_pred HhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999777777665 589999998988 7655 9999999999999999999975 45
Q ss_pred chhHHHHHhhc--cCCCHHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHH
Q 004076 703 LITRFISSIVS--PFASYEKVREVEEFFSSR--CKPYIARTLRQSIERVQINAKWVE 755 (775)
Q Consensus 703 ~l~~~i~~~~~--~~~t~~~~~~~~~Ff~~~--~~~~~~~~~~~~le~i~~ni~W~~ 755 (775)
.+.+.+...+. .+++++.++++++||+++ ..++.+|.+.++++.++.|+++++
T Consensus 774 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 774 AIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 55555554444 899999999999999743 345889999999999999998865
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-89 Score=803.31 Aligned_cols=725 Identities=32% Similarity=0.504 Sum_probs=587.6
Q ss_pred CCCCCcee-eE--EEEEEEecCC--CCeEEEEEEEEEEE--ECCCCEEEEEeCCceeeEeEeeeccCCCCccccCeeEEE
Q 004076 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (775)
Q Consensus 9 rLp~~v~p-~~--Y~l~l~~~~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~ 81 (775)
.++..+.| .+ |++.|+++.. ..+|+|+++|++.. ..+...|+||+.+|+|.++++++... .. .+.+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~------~~-~~~~ 84 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL------TA-WYRL 84 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc------cc-cccc
Confidence 34445555 66 7777665544 58999999999987 33344499999999999999986311 11 2233
Q ss_pred ecCCeEEEEEeCCC--c---CCceEEEEEEEEeccC-CCCcceEEEeeccCCeeeeccccCCCCCCCCceeeccCCCCCe
Q 004076 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (775)
Q Consensus 82 ~~~~~~l~i~l~~~--l---~~g~~~l~i~y~g~~~-~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k 155 (775)
+. +.+.+....+ + .++...+.+.+.+... +.+.|+|++.+.. ..+++||||+.+||+||||+|+|+.|
T Consensus 85 ~~--~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 85 DG--DALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cC--ccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 33 3333333222 2 2347778888888776 6788999886543 67889999999999999999999999
Q ss_pred eEEEEEEEECCCCeEeeCCCccceeec-CceEEEEEeeCCCCcceEEEEEEeeeeEEeeccc---CCeEEEEEEeCCccc
Q 004076 156 ATFKITLDVPSELVALSNMPVIDEKVD-GNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 231 (775)
Q Consensus 156 a~f~l~i~~p~~~~~isn~~~~~~~~~-~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~ 231 (775)
|+|+++|+.++++.++|||+....... +++++++|+.++||||||+|+++|+|..++.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 999999999999999999999876433 5589999999999999999999999988775432 479999999998889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHH
Q 004076 232 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 311 (775)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 311 (775)
.++++++.+.+++++|+++||+|||+++ ++|++|+|+.|||||||+++|++..+|.+++.++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998777777889999999999999
Q ss_pred HhhcCccCcCccchhHHhhhHHHHHHHHHHhhhCC-chhHHHHHHHHHHH-HhhhcccCCCCCeEeecCCcchhhhcccc
Q 004076 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (775)
Q Consensus 312 qWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~pi~~~~~~~~~~~~~f~~ 389 (775)
|||||+|||+||+++|||||||+|++..+.+.++| .|..+..+...... ++..|+...+||+...+.+|.+++..||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888888766654 78889999999999999999999999999
Q ss_pred hhcchhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCc-E
Q 004076 390 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 468 (775)
Q Consensus 390 i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~~l~~~~~~W~~~~g~P~~~v~~~~~-~ 468 (775)
++|.||++|+|||+.++|++.|++||+.|+++|++++++++|||+++++++|+|+..+|+.|++|+|+|++.|+..++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999886 7
Q ss_pred EEEEEEeeccCCCCCCCeEEEEEEEEeccccceeeeEeeccceEEEecccccccccCCCCCCceEEEccCceEEEEEecc
Q 004076 469 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 548 (775)
Q Consensus 469 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyrV~Yd 548 (775)
++++|.||...+......|+||+.+.....+......+.....++.+.... ..+- --+++|....|+|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 899999998776334459999999987654422333444555566665321 0111 368899999999999999
Q ss_pred hhhHH-------------------------------------------------------------------HH------
Q 004076 549 KDLAA-------------------------------------------------------------------SH------ 555 (775)
Q Consensus 549 ~~~w~-------------------------------------------------------------------~~------ 555 (775)
.+.|. ..
T Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 630 (859)
T COG0308 551 DQSLSKLLQHDPRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFADLEKFIDP 630 (859)
T ss_pred HHHHHHHHhhhhhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchhhhhhcCH
Confidence 99875 00
Q ss_pred -HHHHhHHHHH--------------------HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhhccc
Q 004076 556 -LDALLRGEIF--------------------TALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSA 614 (775)
Q Consensus 556 -~~~~~R~~ll--------------------~~ac~~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~~~~~~~~ 614 (775)
.....|..+. +.++...+..+...+..+|..+-.. ....++++|..+...+.. ..
T Consensus 631 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~ 706 (859)
T COG0308 631 DAIDQLRDALVRLGAEAVADDLLALYHIGALSQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVVKAYAA--AG 706 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHhhhhccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHHHHHHH--hc
Confidence 0000111100 2333444556666666677666333 334788999876555543 34
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhccC-cccccceeeeee-Ec--cccHHHHHHHHHHH
Q 004076 615 SDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VS--IEGRETAWKWLKDN 690 (775)
Q Consensus 615 g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~-~ir~qd~~~~~~-v~--~~g~~~~w~fl~~n 690 (775)
+..+.+..+.+.|..++....+.++..+.+....+..+.+.|..+... .+..|++..... .. .+++++.|.|...|
T Consensus 707 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (859)
T COG0308 707 NMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNEARWLYGTFA 786 (859)
T ss_pred ChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchhhHHHHHHHh
Confidence 445578999999999988899999999999999999999999998876 678899887777 33 34999999999999
Q ss_pred HH---HHHHHhCCCcchhHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 004076 691 WD---HISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIR 758 (775)
Q Consensus 691 ~~---~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~ 758 (775)
|+ .+....+++......+......++....+.++++|++....+...+.+.+++++|....++.+...
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~l~~~~~ 857 (859)
T COG0308 787 FENPALLHALDGSGYRFLGVIVLELNIFNPQLALRKIEEFLELKKLKALERLIREALETIAARERLSKDLA 857 (859)
T ss_pred hhchhhhhhhccccccccceEEEEeeccchhhHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhhhhhhc
Confidence 98 666666665433333334467888999999999999986656888999999999999988876543
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=4.8e-84 Score=751.02 Aligned_cols=507 Identities=24% Similarity=0.339 Sum_probs=411.2
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEeEeeeccCCCCccccCeeEEEecCCeEEEE
Q 004076 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (775)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (775)
|..+...||+|+|+++++...++|+++|+++...+.+.|+||+.+|+|.+|.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 55688999999999999999999999999998777778999999999999999642 111 1234555677888
Q ss_pred EeCCCcCCceEEEEEEEEecc--CCCCcceEEEeeccCCeeeeccccCCCCCCCCceeeccCCCCCeeEEEEEEEECCC-
Q 004076 91 EFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (775)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~--~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~- 167 (775)
.+ + ++.++|+|.|.+.. +....|+|++.+ +++|||||.+||++|||+|+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 35789999997644 456789999753 568999999999999999999999999999999986
Q ss_pred C-eEeeCCCccce-eecCceEEEEEeeCCCCcceEEEEEEeeeeEEeec----ccCCeEEEEEEeCCccchHHHHHHHHH
Q 004076 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (775)
Q Consensus 168 ~-~~isn~~~~~~-~~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (775)
| +++|||+++.. ...+++++++|+.++|||+||+||++|+|+.++.. ...++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 7 56899987765 33567888999999999999999999999988742 224589999999999889999999999
Q ss_pred HHHHHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCccCcC
Q 004076 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (775)
Q Consensus 242 ~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 321 (775)
++|++||++||.|||++|+++|++|+|..||||||||++|++..++.++...+...++.+..+||||+|||||||+|||+
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999888666667778999999999999999999999
Q ss_pred ccchhHHhhhHHHHHHHHHHhhhCCchh--HHHHHHHHHHHHhhhcccCCCCCeEeecCCcchhhhcccchhcchhhHHH
Q 004076 322 WWTHLWLNEGFATWVSYLAADSLFPEWK--IWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (775)
Q Consensus 322 ~w~d~WL~EGfA~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl 399 (775)
||+++|||||||+|++..+.....+... +...... ....+..|+...+||+.. .+..+++..|+.++|.||++||
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~l-r~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vL 380 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLL-RAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVI 380 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHH
Confidence 9999999999999999776655443311 1111100 012344577777888754 3345677889999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----c--EEEEEE
Q 004076 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 473 (775)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~~l~~~~~~W~~~~g~P~~~v~~~~----~--~~~l~Q 473 (775)
|||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+|+|++++ + +++++|
T Consensus 381 rML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q 459 (863)
T TIGR02414 381 RMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQ 459 (863)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999985 89999999999999863 2 455666
Q ss_pred EeeccCCCCCCCeEEEEEEEEec--cccc-----------eeeeEeeccceEEEecccccccccCCCCCCceEEEccCce
Q 004076 474 SQFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (775)
Q Consensus 474 ~rf~~~~~~~~~~w~iPl~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (775)
.+....+......|+|||.+..- ++.. ...+.++..++++.++.+. .. --+-++.+.+
T Consensus 460 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~-------~~--p~~sl~r~fs 530 (863)
T TIGR02414 460 STPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA-------EK--PVPSLLRGFS 530 (863)
T ss_pred eCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC-------CC--CeeeecCCCC
Confidence 54322223334589999999542 2211 1235677778888887531 11 2467778888
Q ss_pred EEEEEecchh
Q 004076 541 GFYRVKYDKD 550 (775)
Q Consensus 541 gyyrV~Yd~~ 550 (775)
.+-++.|+..
T Consensus 531 apv~l~~~~~ 540 (863)
T TIGR02414 531 APVNLEYPYS 540 (863)
T ss_pred ceEEEeCCCC
Confidence 8888876543
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=2.1e-83 Score=748.16 Aligned_cols=507 Identities=25% Similarity=0.363 Sum_probs=408.8
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEE-ECCCCEEEEEeCCceeeEeEeeeccCCCCccccCeeEEEecCCeEEE
Q 004076 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILV 89 (775)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (775)
|..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|+
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L~ 87 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGLT 87 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEEE
Confidence 55689999999999999999999999999876 456789999999999999998652 11111 3445567888
Q ss_pred EEeCCCcCCceEEEEEEEEeccC--CCCcceEEEeeccCCeeeeccccCCCCCCCCceeeccCCCCCeeEEEEEEEECC-
Q 004076 90 LEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS- 166 (775)
Q Consensus 90 i~l~~~l~~g~~~l~i~y~g~~~--~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~- 166 (775)
|.. + ++.++|+|.|.+... ....|+|++.+ +++|||||.+||+||||+|+|++||+|+++|++|+
T Consensus 88 I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~ 155 (875)
T PRK14015 88 IEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKA 155 (875)
T ss_pred Eec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccc
Confidence 872 3 336899999987653 44679998642 56899999999999999999999999999999999
Q ss_pred CC-eEeeCCCcccee-ecCceEEEEEeeCCCCcceEEEEEEeeeeEEeec--c--cCCeEEEEEEeCCccchHHHHHHHH
Q 004076 167 EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--T--SDGIKVRVYCQVGKANQGKFALNVA 240 (775)
Q Consensus 167 ~~-~~isn~~~~~~~-~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~--~--~~g~~v~v~~~~~~~~~~~~~l~~~ 240 (775)
.| +++|||++++.. ..+++++++|+.++|||+||+||++|+|+.++.. + ..++++++|++|+..+.++++++.+
T Consensus 156 ~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~ 235 (875)
T PRK14015 156 KYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSL 235 (875)
T ss_pred cCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHH
Confidence 48 679999988774 4577889999999999999999999999988742 2 2359999999999998999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCccCc
Q 004076 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (775)
Q Consensus 241 ~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (775)
+++|++||++||.|||++|+++|++|+|..||||||||++|++..++.+++..+...+..+..+||||+|||||||+||+
T Consensus 236 ~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~ 315 (875)
T PRK14015 236 KKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 315 (875)
T ss_pred HHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999998888766666777889999999999999999999
Q ss_pred CccchhHHhhhHHHHHHHHHHhhhCCc-hhHHHHHHHHHHHHhhhcccCCCCCeEeecCCcchhhhcccchhcchhhHHH
Q 004076 321 EWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (775)
Q Consensus 321 ~~w~d~WL~EGfA~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl 399 (775)
.||+|+|||||||+|++..+.....+. ..............+..|+...+||+... +..+++..|+.++|.||++||
T Consensus 316 ~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~vL 393 (875)
T PRK14015 316 RDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEVI 393 (875)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHHH
Confidence 999999999999999987766554332 11110100000122444666666777532 344677889999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----c--EEEEEE
Q 004076 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 473 (775)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~~l~~~~~~W~~~~g~P~~~v~~~~----~--~~~l~Q 473 (775)
|||+..||++.|+++|+.|+++|++++++++||++++++++|.|+.+|+ +|++|+|+|+++|+++. + +++++|
T Consensus 394 rMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q 472 (875)
T PRK14015 394 RMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQ 472 (875)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999986 89999999999999863 3 356666
Q ss_pred EeeccCCCCCCCeEEEEEEEEecc--ccc----------eeeeEeeccceEEEecccccccccCCCCCCceEEEccCceE
Q 004076 474 SQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (775)
Q Consensus 474 ~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~g 541 (775)
......+......|.|||.+..-+ +.. ...+.++.+++++.++.+. .. --+-++.+...
T Consensus 473 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s~~r~fsa 543 (875)
T PRK14015 473 STPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPSLLRGFSA 543 (875)
T ss_pred eCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEEecCCCCC
Confidence 543222333445899999996422 221 2246677788888887531 12 24677888888
Q ss_pred EEEEecch
Q 004076 542 FYRVKYDK 549 (775)
Q Consensus 542 yyrV~Yd~ 549 (775)
+-++.|+.
T Consensus 544 pv~~~~~~ 551 (875)
T PRK14015 544 PVKLEYDY 551 (875)
T ss_pred cEEEeCCC
Confidence 88887753
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=4.6e-77 Score=676.16 Aligned_cols=427 Identities=25% Similarity=0.399 Sum_probs=348.1
Q ss_pred CCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECC-CCEEEEEeCCceeeEeEeeeccCCCCccccCeeEEE----ec
Q 004076 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL----VE 83 (775)
Q Consensus 9 rLp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~----~~ 83 (775)
.=|.+++|.||+|+|++|+++.+|+|+|+|++++.++ ++.|+||+.+|+|++|.+++. +..+.. +.
T Consensus 6 sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~ 76 (601)
T TIGR02411 6 SNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEP 76 (601)
T ss_pred cCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCC
Confidence 3477899999999999999999999999999999765 588999999999999988642 122221 23
Q ss_pred CCeEEEEEeCCCcCCc-eEEEEEEEEeccCCCCcceEEEeec-cCCeeeeccccCCCCCCCCceeeccCCCCCeeEEEEE
Q 004076 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYE-LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (775)
Q Consensus 84 ~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~-~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~ 161 (775)
.++.|.|.+++++.+| .++|+|.|.|..+ ..|++...+. .+|..+++++|||||.+||+||||||+|++||+|+++
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~ 154 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAE 154 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEE
Confidence 4678999999999999 8999999999754 3566544332 3466678889999999999999999999999999999
Q ss_pred EEECCCCeEeeCCCccceeecCceEEEEEeeCCCCcceEEEEEEeeeeEEeecccCCeEEEEEEeCCccchHHHHHH-HH
Q 004076 162 LDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VA 240 (775)
Q Consensus 162 i~~p~~~~~isn~~~~~~~~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~ 240 (775)
|++| ++|++||....+.. ++..+++|+.++|||+||+||+||+|+..+ .|.++++|++|+..+.+++++. .+
T Consensus 155 I~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~ 227 (601)
T TIGR02411 155 VESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDT 227 (601)
T ss_pred EeeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhH
Confidence 9999 88887665444322 345578999999999999999999998654 3678999999998888888888 89
Q ss_pred HHHHHHHHHHhCCCCCCCccceeec-CCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCccC
Q 004076 241 VKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (775)
Q Consensus 241 ~~~l~~~e~~~g~~yp~~k~d~v~~-p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (775)
.++|+++|+++| |||++|+|+|++ |+|++|||||||+ +|.+..++.+.. ....+||||||||||||+||
T Consensus 228 ~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~l-tf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT 297 (601)
T TIGR02411 228 ENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPNL-TFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVT 297 (601)
T ss_pred HHHHHHHHHhCC-CCcCccceEEEecCcccccccccccc-eeeccccccCCh--------hhhhhHHHHHHhhccCceee
Confidence 999999999877 999999999987 7899999999995 677666765432 23579999999999999999
Q ss_pred cCccchhHHhhhHHHHHHHHHHhhhCCchhHH-HHHHH--HHHHHhhhcccCCCCCeEeecCCcc--hhhhcccchhcch
Q 004076 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHTG--EIDEIFDAISYRK 394 (775)
Q Consensus 320 ~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~pi~~~~~~~~--~~~~~f~~i~Y~K 394 (775)
++||+|+|||||||+|++.+++++.+|++... ..+.. .....+. .+...+|+...+.+.. +++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESVK--TLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHH--hhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 99999999999999999999999999986431 11111 1111221 1223344443332222 5678999999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcc-----CCCHHHH-HHHhhcCCCcceEEEEEe
Q 004076 395 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 465 (775)
Q Consensus 395 g~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~-----g~~l~~~-~~~W~~~~g~P~~~v~~~ 465 (775)
|+++|+||+..|| ++.|+++||.|+++|+|++++++||++++.+.. +.+++.+ |+.|++++|+|.+.++.+
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999 999999999999999999999999999998763 2466666 899999999999876644
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=8.3e-75 Score=640.40 Aligned_cols=385 Identities=46% Similarity=0.823 Sum_probs=342.0
Q ss_pred CCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEeEeeeccCCCCccccCeeEEEecCCeEE
Q 004076 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (775)
Q Consensus 9 rLp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l 88 (775)
|||++++|.||+|.|++|++..+|+|+++|++++.++++.|+||+.+|+|.++.+.+..... ......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSS--EYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSC--TECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccc--cccccceeecccccee
Confidence 89999999999999999999999999999999999999999999999999999997542211 1122237788888899
Q ss_pred EEEeCCCcCCc-eEEEEEEEEeccCCCCcceEEEeecc--CCeeeeccccCCCCCCCCceeeccCCCCCeeEEEEEEEEC
Q 004076 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (775)
Q Consensus 89 ~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~--~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p 165 (775)
.|.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 69999999999999899999999975 6778899999999999999999999999999999999999
Q ss_pred CCCeEeeCCCcccee-ecCceEEEEEeeCCCCcceEEEEEEeeeeEEeecccCCeEEEEEEeCCccchHHHHHHHHHHHH
Q 004076 166 SELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (775)
Q Consensus 166 ~~~~~isn~~~~~~~-~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (775)
++++|+|||++.+.. ..+++++++|..++|||+|++||++|+|..++....+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 999999999998874 4457999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCccCcCccc
Q 004076 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (775)
Q Consensus 245 ~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (775)
++|+++||+|||++|+++|++|+|..|||||||+|+|++..++++++.++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHHhhhCCchhHHHHHHHHHH-HHhhhcccCCCCCeEeecCCcchhhhcccchhcchh
Q 004076 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 395 (775)
Q Consensus 325 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg 395 (775)
|+||+||||+|++++++++.+|++.++..+..+.+ .++..|....++|+..++.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999888888877766 779999999999999888889999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-55 Score=455.27 Aligned_cols=427 Identities=26% Similarity=0.405 Sum_probs=335.6
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEeEeeeccCCCCccccCe-eEEEecCCeEEE
Q 004076 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPT-KVELVEADEILV 89 (775)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~-~~~~~~~~~~l~ 89 (775)
+..+...|++|++++|++...++|++.+++++..+...|+|+..+|.|.+|++++.+. ...+. .-.+...+..++
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4567789999999999999999999999999887766799999999999999976321 11111 112223334455
Q ss_pred EEeCCCcCCc-eEEEEEEEEeccCCCCcceEEEee-ccCCeeeeccccCCCCCCCCceeeccCCCCCeeEEEEEEEECCC
Q 004076 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (775)
Q Consensus 90 i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~ 167 (775)
+..+.+ +.| ...|.|.|..... ..|+-.-.. ...|++..|+.+|+|..+||.+|||+|.|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~~--atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSPS--ATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccCC--cceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 554433 355 8999999997543 334422222 23477788999999999999999999999999999999999999
Q ss_pred CeEeeCCCcccee-ecCceEEEEEeeCCCCcceEEEEEEeeeeEEeecccCCeEEEEEEeCCccchHHHHHH-HHHHHHH
Q 004076 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 245 (775)
Q Consensus 168 ~~~isn~~~~~~~-~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 245 (775)
+.+++++-...+. -..++..++|+...|+|+||+||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|+
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999887654443 33447789999999999999999999987654 3677899999998888877776 8999999
Q ss_pred HHHHHhCCCCCCCccceeec-CCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCccCcCccc
Q 004076 246 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (775)
Q Consensus 246 ~~e~~~g~~yp~~k~d~v~~-p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (775)
.-|+.+| ||++.++|++++ |+|++||||||-|.+.... ||-++. ....+|||||||.||||+||...|.
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 5899999999988887777 555443 3578999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHHhhhCCchhHHHHHHHHHH-HHh--hhcccCCCCCeEee---cCCcchhhhcccchhcchhhHH
Q 004076 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGL--RLDGLAESHPIEVE---VNHTGEIDEIFDAISYRKGASV 398 (775)
Q Consensus 325 d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~d~~~~~~pi~~~---~~~~~~~~~~f~~i~Y~Kg~~v 398 (775)
+.||||||++|++..++..++|+... +|-.-.. ..+ ..|.....++...- ..+ -+.+..|+.+.|.||..+
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~-~dPDdafs~VpYeKG~~l 388 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFGETSEFTKLVVKLEN-VDPDDAFSQVPYEKGFAL 388 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcCCCcccchhhhhccC-CChHHhhhcCchhhhhHH
Confidence 99999999999999999999987432 2211110 111 12334444444322 222 345778999999999999
Q ss_pred HHHHHHhhC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCC----CH--HHHHHHhhcCCCcceEE
Q 004076 399 IRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVIS 461 (775)
Q Consensus 399 l~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~----~l--~~~~~~W~~~~g~P~~~ 461 (775)
++.|++.+| ++.|...||.|+++|+|+.+.++||.+.|-+.... ++ +--++.|++.+|.|...
T Consensus 389 l~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~ 458 (613)
T KOG1047|consen 389 LFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPK 458 (613)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCC
Confidence 999999999 67899999999999999999999999998775432 22 23579999999999744
No 9
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=3.9e-35 Score=328.29 Aligned_cols=428 Identities=20% Similarity=0.275 Sum_probs=315.4
Q ss_pred eeEEEEEEE-ecCCCCeEEEEEEEEEEE-ECCCCEEEEEeCCceeeEeEeeeccCCC---------------Ccccc---
Q 004076 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVS---------------SKALE--- 75 (775)
Q Consensus 16 p~~Y~l~l~-~~~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~v~~~~~~~---------------~~~~~--- 75 (775)
-.|..+.|. +|+.+.++.|.++|++.. ..+...|.||++++.|.+|.|++..... +....
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 589999998 999999999999999997 4558999999999999999998752110 00000
Q ss_pred ------CeeEEEecCCeEEEEEeCCCcCC-c----eEEEEEEEEeccCCCCcceEEEeeccCCeeeeccccCCC-CCCCC
Q 004076 76 ------PTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (775)
Q Consensus 76 ------~~~~~~~~~~~~l~i~l~~~l~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~e-p~~Ar 143 (775)
..-...+..++.|.|.++++++. | ..+|+|.|+..=+..+--|++..|..+.....+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 01112334567899999988543 3 456779998665554445666655332222334444554 56799
Q ss_pred ceeeccCCCCCeeEEEEEEEECCCCeEeeCCCcccee--ecCceEEEEEeeCCCCcceEEEEEEeeeeEEeecccCCeEE
Q 004076 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK--VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (775)
Q Consensus 144 ~~fPc~DeP~~ka~f~l~i~~p~~~~~isn~~~~~~~--~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v 221 (775)
.||||.|.+..+++|++.+++|+..+++|+|.+.... .+-..++++|.-+.|+++..+||+||.|+... ...++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~--~P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYV--EPSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccC--CCccCcc
Confidence 9999999999999999999999999999999987762 34457899999999999999999999999873 2347899
Q ss_pred EEEEeCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHH
Q 004076 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (775)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~ 301 (775)
..|+.|+.........-...++++|||+++|..|||+.+.+|++|.-..--|....|.+++.+ +||..+. ++.....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~i--IDq~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNI--IDQTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhh--hhHHHHH
Confidence 999999998888888889999999999999988999999999999877777777788888877 8887653 3334446
Q ss_pred HHHHHHHHHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcccC----CCCCeEeec
Q 004076 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA----ESHPIEVEV 377 (775)
Q Consensus 302 ~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~pi~~~~ 377 (775)
...+|--||.||||-++|+..|+|.||.+|+|.|+..+++++.+|.+++.-+.-.+.-.-..+|-.. .+.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 6789999999999999999999999999999999999999999998765333222221223333211 111322111
Q ss_pred C--------------CcchhhhcccchhcchhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCC
Q 004076 378 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 443 (775)
Q Consensus 378 ~--------------~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~~ 443 (775)
. ...-.+..|..-.-.|+..+.+|+++.+|.+-|.+.++..+. .++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhH
Confidence 1 111111222222335888888999999998877665555443 232223
Q ss_pred HHHHHHHhhcCCCcceEEEEEe
Q 004076 444 VNKLMNSWTKQKGYPVISVKVK 465 (775)
Q Consensus 444 l~~~~~~W~~~~g~P~~~v~~~ 465 (775)
++.||+.|++..|+|.+.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5778888999999998888753
No 10
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=1.4e-33 Score=303.74 Aligned_cols=190 Identities=36% Similarity=0.644 Sum_probs=162.1
Q ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHhhhhcccCCHHHHHHHHHHHHcCC
Q 004076 554 SHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETD 631 (775)
Q Consensus 554 ~~~~~~~R~~ll~~ac~~g~~~ci~~a~~~f~~~~~~~~~--~~i~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~y~~~~ 631 (775)
++....+|..|+..|| |+++|+++|+++|++|+.++.. ..||||+|. .++|.++++|+.++|++|+++|++++
T Consensus 125 ~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~---~v~~~~~~~g~~~~~~~l~~~~~~~~ 199 (324)
T PF11838_consen 125 DHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRW---AVYCAGVRNGDEEEWDFLWELYKNST 199 (324)
T ss_dssp CHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHH---HHHHHHTTS--HHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHH---HHHHHHHHHhhHhhHHHHHHHHhccC
Confidence 3445789999999999 9999999999999999987433 379999999 66777888999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCcHHHHHHHHHHhccCc-ccccceeeeee-Ec-cc--cHHHHHHHHHHHHHHHHHHhCCC-cchh
Q 004076 632 LSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQDAVYGLA-VS-IE--GRETAWKWLKDNWDHISKTWGSG-FLIT 705 (775)
Q Consensus 632 ~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~-ir~qd~~~~~~-v~-~~--g~~~~w~fl~~n~~~i~~~~~~~-~~l~ 705 (775)
++.+|..++.||||++||++++++|+++++++ |+.||+..++. ++ .+ |+.++|+|+++||+.|.++++++ ..+.
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~ 279 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALS 279 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCH
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 99999999999999999999999999999984 99999999988 76 55 99999999999999999999865 4789
Q ss_pred HHHHHhhccCCCHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHH
Q 004076 706 RFISSIVSPFASYEKVREVEEFFSS--RCKPYIARTLRQSIERVQ 748 (775)
Q Consensus 706 ~~i~~~~~~~~t~~~~~~~~~Ff~~--~~~~~~~~~~~~~le~i~ 748 (775)
.++..+++.++|+++++++++||+. +..++.+++++|++|+||
T Consensus 280 ~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~l~q~~e~Ir 324 (324)
T PF11838_consen 280 RVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRALAQSLETIR 324 (324)
T ss_dssp HHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHHCHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHHHHHHHHhcC
Confidence 9999999999999999999999954 445688999999999996
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.30 E-value=1.8e-10 Score=122.47 Aligned_cols=240 Identities=15% Similarity=0.189 Sum_probs=156.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCccceeec-CCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHH
Q 004076 231 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHEL 309 (775)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~~g~~yp~~k~d~v~~-p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEl 309 (775)
...+...+.++++++.--+.|| +-|+.++.+++. -+..+||||+-.-.........+. +....+....+++||.
T Consensus 181 ~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~----~~~ky~~~l~llsHEy 255 (558)
T COG3975 181 FDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFT----DQDKYQDLLGLLSHEY 255 (558)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecccccccccccccc----chhHHHHHHHHHHHHH
Confidence 3566677888999999999999 789999887764 566688999855444333322221 1222466789999999
Q ss_pred HHHhhcCccCcCc-c----------chhHHhhhHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhcccCCCCCeEeec
Q 004076 310 AHQWFGNLVTMEW-W----------THLWLNEGFATWVSYLAADSL-FPEWKIWTQFLDECTEGLRLDGLAESHPIEVEV 377 (775)
Q Consensus 310 aHqWfGnlVt~~~-w----------~d~WL~EGfA~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~ 377 (775)
.|-|-+-.+.+.- | .-+|+.|||++|+..+..-.. .-+.+-....+.+...++........+|+....
T Consensus 256 fH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laEsS 335 (558)
T COG3975 256 FHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAESS 335 (558)
T ss_pred HHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccccc
Confidence 9999987776642 2 458999999999997755432 111111112222223333222222223333211
Q ss_pred CCc-----chhhhcccch--hcchhhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHhccCCC
Q 004076 378 NHT-----GEIDEIFDAI--SYRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEP 443 (775)
Q Consensus 378 ~~~-----~~~~~~f~~i--~Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~df~~~l~~~~g~~ 443 (775)
.++ ..-...-+.+ .|.||++|--+|...| |...+...++.+.+.+.. +..+++|+..++++++|.+
T Consensus 336 ~~awik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~d 415 (558)
T COG3975 336 FDAWIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGLD 415 (558)
T ss_pred cchhHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhcccc
Confidence 110 0000111222 3999999998888877 466688888888887765 6679999999999999999
Q ss_pred HHHHHHHhhcCCCcceEEEEEeCcEEEEEEEe
Q 004076 444 VNKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 475 (775)
Q Consensus 444 l~~~~~~W~~~~g~P~~~v~~~~~~~~l~Q~r 475 (775)
+..||+..+++.--|.+.---....+++++++
T Consensus 416 l~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 416 LATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 99999999998887766543333456666653
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.16 E-value=4.6e-11 Score=109.50 Aligned_cols=106 Identities=29% Similarity=0.488 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcccCCCCCeEeecC
Q 004076 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN 378 (775)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~ 378 (775)
..+..+++||++|+|+++.++.......|++||+|+|++... .. .+.......+..+...+..++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 345689999999999999998777788999999999999331 01 11111122233332222222221111
Q ss_pred CcchhhhcccchhcchhhHHHHHHHHhhCHHHHHHHHHHH
Q 004076 379 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 418 (775)
Q Consensus 379 ~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 418 (775)
. ...+....|.+|.+++++|....|++.|++.|++|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 33455679999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.53 E-value=0.003 Score=66.86 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHhhc--CccCcC--ccchhHHhhhHHHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhc-ccCCCCC
Q 004076 298 KQRVATVVAHELAHQWFG--NLVTME--WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHP 372 (775)
Q Consensus 298 ~~~~~~~iaHElaHqWfG--nlVt~~--~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~p 372 (775)
...+..++|||+-|+=-- +.|... .-.|+|||||+|.-+|.++..+..+..+. ........+..+ .....+.
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~---i~d~R~~~y~~~~~~~~~~~ 212 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNN---IRDSRIPYYNNYTSGNYNCS 212 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCc---cccccHHHHhhccccCCCcc
Confidence 345788999999997622 334433 23689999999999999887766432111 000001111111 1111122
Q ss_pred eEeecCCcchhhhcccchhcchhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHh-c-cCCCHHHHHHH
Q 004076 373 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNS 450 (775)
Q Consensus 373 i~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-~g~~l~~~~~~ 450 (775)
+..- ... .-....|....+++.-|....|.+.+++.|.. ....+.++..+.+.+ + .+.++.++|.+
T Consensus 213 l~~w-~~~-----g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~ 280 (366)
T PF10460_consen 213 LTAW-SSF-----GDSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRR 280 (366)
T ss_pred eeec-CCC-----ccccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2111 111 11235799999999999888898887666651 234567776666544 4 36789999999
Q ss_pred hhcCC
Q 004076 451 WTKQK 455 (775)
Q Consensus 451 W~~~~ 455 (775)
|..--
T Consensus 281 w~~A~ 285 (366)
T PF10460_consen 281 WGVAL 285 (366)
T ss_pred HHHHH
Confidence 97655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.32 E-value=0.00012 Score=64.91 Aligned_cols=43 Identities=23% Similarity=0.477 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhcCccC-----------cCccchhHHhhhHHHHHHHHHHhh
Q 004076 301 VATVVAHELAHQWFGNLVT-----------MEWWTHLWLNEGFATWVSYLAADS 343 (775)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt-----------~~~w~d~WL~EGfA~y~~~~~~~~ 343 (775)
...++|||..|.|-+-.+. +.--+.+|+-|||++|++.+++..
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 4578999999999975444 445567999999999999887654
No 15
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.84 E-value=0.005 Score=55.29 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCccC---cCccchhHHhhhHHHHHHHHHH
Q 004076 303 TVVAHELAHQWFGNLVT---MEWWTHLWLNEGFATWVSYLAA 341 (775)
Q Consensus 303 ~~iaHElaHqWfGnlVt---~~~w~d~WL~EGfA~y~~~~~~ 341 (775)
.+++||.+||=.-|.=- ...| =.||.||||+|+|..-.
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~-P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADW-PRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCC-chHHHHhHHHHcCCCcc
Confidence 58999999999876421 1222 27999999999996544
No 16
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=95.72 E-value=0.42 Score=51.59 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=38.3
Q ss_pred EEEEEEEeeccCCCCCCCeEEEEEEEEecc--ccc-----eeeeEeeccceEEEecccccccccCCCCCCceEEEccCce
Q 004076 468 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (775)
Q Consensus 468 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (775)
+++++|..-...+..+...|+|||.+..-+ +.. ...+.++..++++.+..+. +. -..-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 477888765444555556899999984432 222 1235677888899887542 22 4677888889
Q ss_pred EEEEEecch
Q 004076 541 GFYRVKYDK 549 (775)
Q Consensus 541 gyyrV~Yd~ 549 (775)
.+-++.||-
T Consensus 77 APV~l~~~~ 85 (367)
T PF11940_consen 77 APVKLEYDY 85 (367)
T ss_dssp SSSEEE---
T ss_pred cceEecCCC
Confidence 888888863
No 17
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=95.30 E-value=0.28 Score=48.26 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCccceeec--CCCCCcccc----ccccceeecccccccCCCCcHHHHHHHHHHHHHH
Q 004076 236 ALNVAVKTLELYKEYFAVP-YSLPKLDMIAI--PDFAAGAME----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 308 (775)
Q Consensus 236 ~l~~~~~~l~~~e~~~g~~-yp~~k~d~v~~--p~~~~g~mE----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHE 308 (775)
+.....+++.+-.+.|-.+ .+-+..+.|.+ .++..-|-- +-.-|.++...+ -.... ....+..+..+|.||
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i-~~~~~-~~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYI-AKYPA-DGDVRDEIIGVLYHE 103 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHH-hhccc-ccchHHHHHHHHHHH
Confidence 3444555556666665433 22233343332 343211111 113466665532 22111 122346788999999
Q ss_pred HHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhcccCCCCCeEeecCCcchhhhccc
Q 004076 309 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFD 388 (775)
Q Consensus 309 laHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~ 388 (775)
++|-|=.+--... --||-||+|.|+-..+- ..|. ....|... ..++
T Consensus 104 ~~H~~Q~~~~~~~---P~~liEGIADyVRl~aG--~~~~--------------------~w~~p~~~---------~~wd 149 (205)
T PF04450_consen 104 MVHCWQWDGRGTA---PGGLIEGIADYVRLKAG--YAPP--------------------HWKRPGGG---------DSWD 149 (205)
T ss_pred HHHHhhcCCCCCC---ChhheecHHHHHHHHcC--CCCc--------------------cccCCCCC---------CCcc
Confidence 9997755442211 24899999999976521 1110 01111110 1222
Q ss_pred chhcchhhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHHHHHH
Q 004076 389 AISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 450 (775)
Q Consensus 389 ~i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~~l~~~~~~ 450 (775)
-.|.-.|.+|.-|+. ..|+. |-+-|..=+.+..| +.+++|.. .+|++++++.+.
T Consensus 150 -~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~~---l~G~~v~~LW~e 204 (205)
T PF04450_consen 150 -DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWKE---LLGKPVDELWAE 204 (205)
T ss_pred -cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHHH---HHCcCHHHHHhh
Confidence 378889999999998 66644 55555555555455 45666554 458888887654
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=93.07 E-value=0.38 Score=47.27 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCccceeecCCCCCc-----cccccccceeecccccc-cCCCCcHHHHHHHHHHHHHHHHHH
Q 004076 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 312 (775)
Q Consensus 239 ~~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g-----~mE~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 312 (775)
.+.+.+....+.+ |-+.+++.++|.-+.+ .+...|-..+....+++ -+.. .....+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~---~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPND---YSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCc---ccHHHHHHHHHHHHHHH
Confidence 3445555555554 4557777655522221 11123333344443333 2221 23346889999999998
Q ss_pred hhcCccC----cCccchhHHhhhHHHHHHHHHHhhhC
Q 004076 313 WFGNLVT----MEWWTHLWLNEGFATWVSYLAADSLF 345 (775)
Q Consensus 313 WfGnlVt----~~~w~d~WL~EGfA~y~~~~~~~~~~ 345 (775)
+--..+. -..--|.-+.||+|.+++.....+..
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 6433332 12334567899999999977665543
No 19
>PRK04860 hypothetical protein; Provisional
Probab=89.56 E-value=0.86 Score=42.88 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccceeecCCCCCccccc--cccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHh
Q 004076 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN--YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (775)
Q Consensus 236 ~l~~~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~--~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (775)
+...+...+..-+++||.|+|.|++.+-. ....||+-. -+-|.+... ++.+. ....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~~l~~~~I~~Np~--ll~~~-----~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTAWLQSNEIRLNPV--LLLEN-----QQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcchhHhcCCeeeCHH--HHhhC-----cHHHHHhHHHHHHHHHH
Confidence 44566677788889999888876654332 122244422 223444433 22221 34567889999999987
Q ss_pred h
Q 004076 314 F 314 (775)
Q Consensus 314 f 314 (775)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 4
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=85.46 E-value=3 Score=34.56 Aligned_cols=75 Identities=24% Similarity=0.324 Sum_probs=47.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhhcccCCHHHHHHHHHHHHcCCCHHHHH
Q 004076 558 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 637 (775)
Q Consensus 558 ~~~R~~ll~~ac~~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~ 637 (775)
...|..++..++..+++..+.... +.+.++ ++.+|..+..++. +.|+.+..+.|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~----~~l~d~-----~~~vr~~a~~aL~---~i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALI----ELLKDE-----DPMVRRAAARALG---RIGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHH----HHHTSS-----SHHHHHHHHHHHH---CCHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHH----HHHcCC-----CHHHHHHHHHHHH---HhCCHHHHHHHHHHHcCCCcHHHHH
Confidence 467777888888777665444433 333331 3677775544443 3567777888888777777766677
Q ss_pred HHHHHhc
Q 004076 638 RILSSLA 644 (775)
Q Consensus 638 ~ll~aL~ 644 (775)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 7777775
No 21
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=84.96 E-value=5.8 Score=39.17 Aligned_cols=92 Identities=21% Similarity=0.333 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhh
Q 004076 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (775)
Q Consensus 235 ~~l~~~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (775)
.+.+.....+..|++.+|.++ +++.+=-.-. ..|....-|.|.++-..+.+.+ .-+..+|+|||||.-.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhcc
Confidence 445566777778888888643 3443322222 2455555667777766333322 2478899999999887
Q ss_pred cCccCcCccchhHHhhhHHHHHHHHHHhhhCCchhHHHH
Q 004076 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (775)
Q Consensus 315 GnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 353 (775)
-|- -...| ..++...|+|.....
T Consensus 178 ~nH-----s~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 178 PNH-----SKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred CCC-----CHHHH-----------HHHHHHCcCHHHHHH
Confidence 653 22233 345667788765433
No 22
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=83.85 E-value=1.1 Score=44.51 Aligned_cols=40 Identities=33% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhhh
Q 004076 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (775)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (775)
..++.+|-||+|||=|.- . +|.=+||+||++.+...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y~--~----~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIYV--N----NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEee--c----CcchHhHHHHHHHHHHhHHHH
Confidence 458999999999997642 2 356789999999998777654
No 23
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=82.14 E-value=57 Score=39.21 Aligned_cols=129 Identities=15% Similarity=0.203 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhcCcc-CcCccchhHHhhhHHHHHHHHHHhhhC---CchhH-H--HHHHHHHHHHhhhcccCCCCCeEe
Q 004076 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLF---PEWKI-W--TQFLDECTEGLRLDGLAESHPIEV 375 (775)
Q Consensus 303 ~~iaHElaHqWfGnlV-t~~~w~d~WL~EGfA~y~~~~~~~~~~---~~~~~-~--~~~~~~~~~~~~~d~~~~~~pi~~ 375 (775)
..+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+.... ..|-+ . ...+...+.+.- + ...|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~i-~---~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIALI-D---NNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHHH-h---cCCC---
Confidence 5789999999988887 344566888 77788888877554211 11111 0 011111111110 1 0001
Q ss_pred ecCCcchhhhcccch-hcchhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHhc-cCCCHHHHHHHh
Q 004076 376 EVNHTGEIDEIFDAI-SYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAK--TEDLWAALEEG-SGEPVNKLMNSW 451 (775)
Q Consensus 376 ~~~~~~~~~~~f~~i-~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~--~~df~~~l~~~-~g~~l~~~~~~W 451 (775)
|+.. .-.|=..+..||...-|++.|+..-+.|-+. .-.+.. --++++-+... ++.|+..+++.|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 2211 2235555555888889999999888888765 222222 12334455555 899999999988
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=81.80 E-value=1.2 Score=41.47 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHH-HHhCCCCCCCccceeecCCC--CCccccc-cccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 004076 242 KTLELYK-EYFAVPYSLPKLDMIAIPDF--AAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (775)
Q Consensus 242 ~~l~~~e-~~~g~~yp~~k~d~v~~p~~--~~g~mE~-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (775)
+.++.++ .+|+-++|-+++ ..-... ..|.... .+.|.++.. .........+..+|.|||+|.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~i--~w~~r~~~~~G~~~~~~~~I~ln~~-------l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPKV--VWNKRLRKTGGRCLLKSAEIRLNPK-------LLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCEE--EEehhhhhhhHHhhcCCCEEEeCHH-------HHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444455 788877776532 221111 1222221 233444433 111112345778999999999974
No 25
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=81.25 E-value=1.3 Score=46.56 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhhh
Q 004076 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (775)
Q Consensus 300 ~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (775)
.++.+|-||+|||=+. .+ +|.=+||+||++.+...+.+.
T Consensus 164 ~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 164 ELARLIFHELAHQTLY----VK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHhhceee----cC--CCchhhHHHHHHHHHHHHHHH
Confidence 5899999999999442 11 356789999999998776654
No 26
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=70.62 E-value=5 Score=42.66 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhhh
Q 004076 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (775)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (775)
.-.++|||+|||= | ...|.=|.|+++++..+-
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~s 227 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACINS 227 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhcC
Confidence 4579999999994 2 358999999999876543
No 27
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=64.14 E-value=10 Score=36.94 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhh
Q 004076 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (775)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~ 343 (775)
.-.++|||+.|-|.- ..-----+..+-||+++.+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 356899999999962 11111125789999999999997764
No 28
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=63.33 E-value=10 Score=35.40 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCc--cceeecCCCC---Cccccccccceeecccc-cccCCCCcHHHHHHHHHH
Q 004076 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 304 (775)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~~g~~yp~~k--~d~v~~p~~~---~g~mE~~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 304 (775)
..+..|...+.++.+||.+.|| .-++.. ..++..=.+. ..|.=+-..++|.+-.- .+.+ ......+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~-------~~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKP-------FASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS--------GGG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCccccc-------Cccccce
Confidence 3455677788999999999999 556642 3333321211 12222222334433211 1111 1112469
Q ss_pred HHHHHHHH
Q 004076 305 VAHELAHQ 312 (775)
Q Consensus 305 iaHElaHq 312 (775)
+||||+|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999996
No 29
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=62.52 E-value=6 Score=39.62 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCCCCccceeecCCCCCccccccc----cceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Q 004076 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYG----LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNL 317 (775)
Q Consensus 242 ~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~g----li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnl 317 (775)
+.++-+-+..|.+.|.+++-++-.|. ..|.-..+ .|..... ++.. .+...+..++|||++|-.-++.
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCc
Confidence 34444444445566665555554454 33332221 2455544 3321 1344688999999999998766
Q ss_pred cCc
Q 004076 318 VTM 320 (775)
Q Consensus 318 Vt~ 320 (775)
...
T Consensus 106 ~~~ 108 (226)
T PF01435_consen 106 LKS 108 (226)
T ss_dssp CCC
T ss_pred chH
Confidence 544
No 30
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=60.64 E-value=8.4 Score=42.28 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=34.3
Q ss_pred CCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 004076 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (775)
Q Consensus 256 p~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (775)
|-..++++.|.|-...|--.+|--++-.+.++...+ +...++.+||||++|-==++
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~qrH 145 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVAQRH 145 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHhhhh
Confidence 444578888876555666665544444343443332 23458999999999964333
No 31
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=60.54 E-value=59 Score=35.36 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 004076 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT 359 (775)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~ 359 (775)
|+-.-.|..+.| |+|.--...+ -+|||.|+|-.+.++.+.+.+......++.+.+
T Consensus 247 QReil~ivR~ea-~YF~PQ~qTk-----VMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 247 QREILRIVRKEA-QYFYPQRQTK-----VMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HHHHHHHHHHHH-HHhcchHHHH-----HhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 333345555555 4443333222 589999999999999988877655555544443
No 32
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=57.49 E-value=91 Score=26.54 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCCCEEEEEeCC-ce--eeEeEeeeccCCCCccccCeeEEEecCCeEEEEEeCCCcCCceEEEEEEEEe
Q 004076 44 GDTKFIVLNAAD-LT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (775)
Q Consensus 44 ~~~~~i~L~~~~-l~--i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g 109 (775)
.+...|.|...+ ++ ...++|.+..+ ..+.......+.....+.+.++.+|++|.|+|.-+--+
T Consensus 17 ~~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 17 AAPEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp S--SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred cCCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 334567776652 44 66666654322 22223333344456789999999999999988765554
No 33
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=55.92 E-value=33 Score=31.82 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=33.3
Q ss_pred cccCeeEEEecCCeEEEEEeCCCcCCceEEEEEEEEeccCCCCcceEE
Q 004076 73 ALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYR 120 (775)
Q Consensus 73 ~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~ 120 (775)
.+....+..+.++..+.|.+++|++|| -+++|.+.+.-+....|.|.
T Consensus 76 ~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 76 SIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred ccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEE
Confidence 344466888889999999999999999 44455554443444557664
No 34
>PRK04351 hypothetical protein; Provisional
Probab=54.98 E-value=12 Score=34.85 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 004076 298 KQRVATVVAHELAHQW 313 (775)
Q Consensus 298 ~~~~~~~iaHElaHqW 313 (775)
...+..+|+|||+|-.
T Consensus 58 ~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 58 LEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4568899999999953
No 35
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=54.62 E-value=12 Score=32.95 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhcCcc
Q 004076 301 VATVVAHELAHQWFGNLV 318 (775)
Q Consensus 301 ~~~~iaHElaHqWfGnlV 318 (775)
...+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 457999999999987654
No 36
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=54.03 E-value=22 Score=33.31 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 004076 298 KQRVATVVAHELAHQWFG 315 (775)
Q Consensus 298 ~~~~~~~iaHElaHqWfG 315 (775)
...+..+|.|||+|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456889999999999974
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=53.76 E-value=38 Score=27.74 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=47.3
Q ss_pred ChhhHHHHHHHhhhhcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhccC
Q 004076 597 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 662 (775)
Q Consensus 597 ~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~ 662 (775)
++..|..+..+++ +.++.+.-..|.+.. +..++.-|...+.+||...++..+..+...+.++
T Consensus 13 ~~~vr~~a~~~L~---~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALG---ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHH---CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHH---HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 4777875444443 467777788888877 6688999999999999999999888888876654
No 38
>PRK05457 heat shock protein HtpX; Provisional
Probab=46.77 E-value=35 Score=35.72 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCCCCCccceeecCCCC---CccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 004076 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (775)
Q Consensus 240 ~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~---~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (775)
..+.++.+.+..|+ |.|++-++-.+... .|.-.+-+.|.+... ++- . -+..++..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ-N-----MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 34556666777775 56787666543222 222222334555543 221 1 123468899999999976655
No 39
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=46.62 E-value=1.2e+02 Score=30.47 Aligned_cols=93 Identities=19% Similarity=0.329 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHh
Q 004076 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (775)
Q Consensus 234 ~~~l~~~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (775)
+.+.+.....+..|.+.+|.+++- +.+-..-. ..|.--.-|-|.+... +.. ....-+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~--~~ik~~k~-~WGScs~~~~i~~~~~-l~~-------~p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRA--IKLKNMKR-RWGSCSKAGEIRFNWR-LVM-------APEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc--eeeeeccc-eeeeecCCCcEEeehh-hhc-------CCHHHHHHHHHHHHHHHh
Confidence 355566777788888899876542 22221111 1233333333333332 111 123357889999999998
Q ss_pred hcCccCcCccchhHHhhhHHHHHHHHHHhhhCCchhHHHH
Q 004076 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (775)
Q Consensus 314 fGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 353 (775)
..|- ++. .| ..++.++|++.....
T Consensus 188 e~nH-s~~----Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-SKR----FW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-cHH----HH-----------HHHHHHCCChHHHHH
Confidence 8872 222 33 345677888765444
No 40
>PRK03001 M48 family peptidase; Provisional
Probab=46.53 E-value=33 Score=35.85 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCCCCCCCccceeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 004076 240 AVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (775)
Q Consensus 240 ~~~~l~~~e~~~g~~yp~~k~d~v~~p~---~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (775)
..+.++-+.+..|+| .|++-++--+. |..|.-...+.|...+. ++ +. -+...+..++|||++|-==++
T Consensus 69 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLP--MPKVYLINEDQPNAFATGRNPEHAAVAATTG-IL-RV-----LSEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEecCCCcceEEecCCCCCeEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhCCC
Confidence 445666667777765 45654443221 11121111234554544 22 11 123468899999999975443
No 41
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=45.43 E-value=31 Score=36.24 Aligned_cols=68 Identities=25% Similarity=0.329 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCCCCCccceeecCCCCCcccccc---ccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCccC
Q 004076 244 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (775)
Q Consensus 244 l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (775)
+.-....-|++ +.+++.++-.|....-++... |.|...+. ++ + . -+...+..+++||++|.=-++.+.
T Consensus 105 v~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~-~----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 105 VAELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-D-L----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HH-h-h----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 33444455533 246676666665444455543 67777666 33 2 1 123468899999999988776654
No 42
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=44.18 E-value=21 Score=39.15 Aligned_cols=110 Identities=23% Similarity=0.258 Sum_probs=59.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhCCCCCCCc--cceeecCCCCCccccccccceeecccccccCCCCcH-HHHHHHHHH
Q 004076 228 GKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA-ANKQRVATV 304 (775)
Q Consensus 228 ~~~~~~~~~l~~~~~~l~~~e~~~g~~yp~~k--~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~-~~~~~~~~~ 304 (775)
+....+..|-..+....+||.++||.. .++. +.++..-.| | -++.-.+.....|+|.+..... ........+
T Consensus 266 ~~~~a~~dAh~~~g~vyD~yk~~fgr~-S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLDV 340 (507)
T COG3227 266 SSDEAAVDAHYNAGKVYDYYKNTFGRN-SYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLDV 340 (507)
T ss_pred cchhhhHHHHhhcchHHHHHHHHhccc-CcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccce
Confidence 333445666778899999999999932 3332 334433222 1 1122222223334443321110 011112468
Q ss_pred HHHHHHHHhhc---CccCcCccchhHHhhhHHHHHHHHHHhhh
Q 004076 305 VAHELAHQWFG---NLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (775)
Q Consensus 305 iaHElaHqWfG---nlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 344 (775)
+||||.|.--+ +|+.-..- -=|||+|+.-+.-++....
T Consensus 341 vAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~~ 381 (507)
T COG3227 341 VAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQYV 381 (507)
T ss_pred ehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHHh
Confidence 99999996554 45443322 2589999999986544433
No 43
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=43.74 E-value=71 Score=31.07 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHh
Q 004076 300 RVATVVAHELAHQW 313 (775)
Q Consensus 300 ~~~~~iaHElaHqW 313 (775)
..+.++||||+|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999996
No 44
>PRK03982 heat shock protein HtpX; Provisional
Probab=43.70 E-value=45 Score=34.98 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCCCCCccceeecCCCCCcccc-----ccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhh
Q 004076 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (775)
Q Consensus 240 ~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE-----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (775)
..+.++-+.+..|+| .+++-++ |+-...|+- .-|.|...+. ++ +. -+...+..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-IL-NL-----LNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HH-hh-----CCHHHHHHHHHHHHHHHHc
Confidence 445556666667754 4566544 322222222 1234544544 22 11 1235689999999999765
Q ss_pred cC
Q 004076 315 GN 316 (775)
Q Consensus 315 Gn 316 (775)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 45
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=43.11 E-value=37 Score=27.78 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCCCCccceeecCCCCC--ccccccccceeecccccccCCC---CcHHHHHHHHHHHHHHHHHHh
Q 004076 243 TLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQH---SAAANKQRVATVVAHELAHQW 313 (775)
Q Consensus 243 ~l~~~e~~~g~~yp~~k~d~v~~p~~~~--g~mE~~gli~~~e~~ll~~~~~---~~~~~~~~~~~~iaHElaHqW 313 (775)
+...+|..||.+ +.+..+-.-|.-.. ..|. .--++.... +.+.+.. ++. .-..+++||++|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~~s~----~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNPDSP----EGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCCCCC----CcchhHhHHHHHHH
Confidence 456789999954 56665544332111 1111 112233333 3332211 111 13468999999964
No 46
>PRK01345 heat shock protein HtpX; Provisional
Probab=42.86 E-value=49 Score=35.23 Aligned_cols=68 Identities=28% Similarity=0.259 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCCCccceeecCCCCCccccc---cccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 004076 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (775)
Q Consensus 240 ~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (775)
..+.++.+.+..|+| .|++-++-.+....-+... -+.|.+.+. |+-.- +...+..++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~L------~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQRL------SPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhhC------CHHHHHHHHHHHHHHHHcCC
Confidence 456667777778865 4566544333222222211 224555544 32211 23468899999999976554
No 47
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.03 E-value=1e+02 Score=26.85 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHhhccCCCHHHHHHHHHH
Q 004076 684 WKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEF 727 (775)
Q Consensus 684 w~fl~~n~~~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~F 727 (775)
|+|+++||..|..-++. ...-+..-+.+.+.+.++++++++=
T Consensus 2 ~~~~~~~w~ii~a~~~~--~~~~~~~~l~~~~a~~~~~~~l~~~ 43 (106)
T PF10805_consen 2 WEFIKKNWGIIWAVFGI--AGGIFWLWLRRTYAKREDIEKLEER 43 (106)
T ss_pred hHHHHhCcHHHHHHHHH--HHHHHHHHHHHhhccHHHHHHHHHH
Confidence 89999999998887642 1222333356678888888887443
No 48
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=41.71 E-value=17 Score=35.24 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc
Q 004076 295 AANKQRVATVVAHELAHQWFGNL 317 (775)
Q Consensus 295 ~~~~~~~~~~iaHElaHqWfGnl 317 (775)
.-....+..++.|||||.++|+-
T Consensus 76 fl~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 76 FLPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred EeeHHHHHHHHHHHHHhcccCCc
Confidence 34456789999999999999873
No 49
>PRK04897 heat shock protein HtpX; Provisional
Probab=41.28 E-value=55 Score=34.50 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCCCCccceeecCCCC---CccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 004076 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (775)
Q Consensus 240 ~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~---~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (775)
..+.++.+.+..|+ |.|++-++-.+... .|.-.+-+.|.+... ++-. -+..++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~~------l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLAI------MNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHhh------CCHHHHHHHHHHHHHHHhcCC
Confidence 45666667777775 56677665433211 121112234555443 2211 123568899999999965444
No 50
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=40.82 E-value=2.6e+02 Score=25.81 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh-------------cCCCCCCCChhhHHHHHHHhhhhcccCCHHHHHHH
Q 004076 557 DALLRGEIFTALALLGHKETLNEASKRFHAFL-------------ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESL 623 (775)
Q Consensus 557 ~~~~R~~ll~~ac~~g~~~ci~~a~~~f~~~~-------------~~~~~~~i~~~lr~~v~~~~~~~~~~g~~~~~~~l 623 (775)
+...+..++.....++++....+. +.+.+.+ .+.+...|.++-|..+..++++.+ |-.+
T Consensus 30 d~~vQklAL~cll~~k~~~l~pY~-d~L~~Lldd~~frdeL~~f~~~~~~~~I~~ehR~~l~pvvlRIL-------ygk~ 101 (141)
T PF07539_consen 30 DPEVQKLALDCLLTWKDPYLTPYK-DNLENLLDDKTFRDELTTFNLSDESSVIEEEHRPELMPVVLRIL-------YGKM 101 (141)
T ss_pred CHHHHHHHHHHHHHhCcHHHHhHH-HHHHHHcCcchHHHHHHhhcccCCcCCCCHHHHhHHHHHHHHHH-------HHHH
Confidence 455666666666666665433332 2222222 222233477888887766665522 3333
Q ss_pred HHHHHcCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Q 004076 624 LRVYRETDL-SQEKTRILSSLASCPDVNIVLEVLNFLLS 661 (775)
Q Consensus 624 ~~~y~~~~~-~~ek~~ll~aL~~~~d~~~l~~~L~~~l~ 661 (775)
..+-..... ..-|..+++.|++.++.+ |.-++++++.
T Consensus 102 ~~~~~~~~~~~~rR~aIL~~L~~l~~~E-l~~Fl~l~~~ 139 (141)
T PF07539_consen 102 QSRKGSGSKKASRRAAILRFLAGLSEEE-LGLFLDLMLE 139 (141)
T ss_pred hhcCCCCCcchHHHHHHHHHHhCCCHHH-HHHHHHHHhc
Confidence 333222222 266778999999887665 5667777654
No 51
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=40.67 E-value=1e+02 Score=28.76 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=24.8
Q ss_pred eEEEEEEeCCcc---chHHHHHHHHHHHHHHHHHHhCCCC
Q 004076 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVPY 255 (775)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~~g~~y 255 (775)
.++++|..+... .......+.+.+++..+++..++.+
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F 41 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKF 41 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 467888877543 2344567788888888888765433
No 52
>PRK03072 heat shock protein HtpX; Provisional
Probab=40.30 E-value=50 Score=34.61 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCccceeecCCC---CCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 004076 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDF---AAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (775)
Q Consensus 239 ~~~~~l~~~e~~~g~~yp~~k~d~v~~p~~---~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (775)
...+.++-+.+..|+ |.|++-++-.+.. ..|....-+.+...+. ++ +. -+...+..++|||++|-==|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-QI-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-Hh-----CCHHHHHHHHHHHHHHHhcC
Confidence 345666777777775 4667755544332 1221111122333333 33 11 12346889999999996544
Q ss_pred C
Q 004076 316 N 316 (775)
Q Consensus 316 n 316 (775)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 4
No 53
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=39.45 E-value=86 Score=28.11 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=35.1
Q ss_pred CEEEEEeCC---ceeeEeEeeeccCCCCccccCeeEEEecC-CeEEEEEeCCCcCCceEEEEEEEEe
Q 004076 47 KFIVLNAAD---LTINNRSVSFTNKVSSKALEPTKVELVEA-DEILVLEFAETLPTGMGVLAIGFEG 109 (775)
Q Consensus 47 ~~i~L~~~~---l~i~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~l~i~l~~~l~~g~~~l~i~y~g 109 (775)
..|.|+..+ ..+..+.+.+.++ ..+.......+.. ...++|.++.+|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 356666552 3345566654221 1222222333333 3459999999999999998877765
No 54
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=38.61 E-value=20 Score=34.42 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHh
Q 004076 301 VATVVAHELAHQW 313 (775)
Q Consensus 301 ~~~~iaHElaHqW 313 (775)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 55
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=36.76 E-value=23 Score=30.40 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhh
Q 004076 300 RVATVVAHELAHQWF 314 (775)
Q Consensus 300 ~~~~~iaHElaHqWf 314 (775)
....+++||++|-|=
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 356789999999993
No 56
>PRK02391 heat shock protein HtpX; Provisional
Probab=36.72 E-value=66 Score=33.87 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCCCCCccceeecCCCCCccc---cccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 004076 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (775)
Q Consensus 240 ~~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~m---E~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (775)
..+.++.+.+..|+| .|++-++-.+....-+. ..-+.|.+.+. ++-. -+..++..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMRR------LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 345556666777764 56766655433222111 12234544443 2211 123458899999999976654
No 57
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.58 E-value=3.4e+02 Score=30.28 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=45.6
Q ss_pred EecCCCCeEEEEEEEEEEEECC--CCEEEEEeCC---ceeeEeEeeeccCCCCcc--ccCeeEEEecCCeEEEEEeCCCc
Q 004076 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKA--LEPTKVELVEADEILVLEFAETL 96 (775)
Q Consensus 24 ~~~~~~~~~~G~v~I~~~~~~~--~~~i~L~~~~---l~i~~v~v~~~~~~~~~~--~~~~~~~~~~~~~~l~i~l~~~l 96 (775)
++|+.+....=++.|++++..+ .+...+-... -.+..+.+.......... .....+.-....+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666677777776544 3444443221 233333332211111000 11122222223456999999999
Q ss_pred CCc-eEEEEEEEEe
Q 004076 97 PTG-MGVLAIGFEG 109 (775)
Q Consensus 97 ~~g-~~~l~i~y~g 109 (775)
.|| +.+|.++|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888763
No 58
>PRK09687 putative lyase; Provisional
Probab=36.51 E-value=2.7e+02 Score=28.98 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=55.9
Q ss_pred HHHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHH-hcCCCCCCCChhhHHHHHHHhhhhcccCC-HHHH-----HHHHHHH
Q 004076 556 LDALLRGEIFTALALLGHKET-LNEASKRFHAF-LADRTTPLLPPDIRKAAYVAVMQKVSASD-RSGY-----ESLLRVY 627 (775)
Q Consensus 556 ~~~~~R~~ll~~ac~~g~~~c-i~~a~~~f~~~-~~~~~~~~i~~~lr~~v~~~~~~~~~~g~-~~~~-----~~l~~~y 627 (775)
.+...|......++.+|+++. ...+...+... +++ -.+..|..+..++.. .+. ...| +.+....
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D-----~d~~VR~~A~~aLG~---~~~~~~~~~~~a~~~l~~~~ 137 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED-----KSACVRASAINATGH---RCKKNPLYSPKIVEQSQITA 137 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhc---ccccccccchHHHHHHHHHh
Confidence 345778888888888887543 23444444444 233 236677533333322 111 1112 3333333
Q ss_pred HcCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhccC
Q 004076 628 RETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 662 (775)
Q Consensus 628 ~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~ 662 (775)
...+..-|...+.|||+.+++..+.-++...-++
T Consensus 138 -~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~ 171 (280)
T PRK09687 138 -FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDP 171 (280)
T ss_pred -hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCC
Confidence 3347778888888888888888887777766543
No 59
>PRK02870 heat shock protein HtpX; Provisional
Probab=36.06 E-value=69 Score=34.33 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCCCccceeecCCCCCcccc---ccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHH
Q 004076 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (775)
Q Consensus 241 ~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (775)
.++++-+....|+|+ .|++-++-.+....-++. .-+.|.+.+. ++ +. -+...+..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-EK-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-hh-----CCHHHHHHHHHHHHHHH
Confidence 344555555567543 356655433322222221 2345555555 32 11 12356889999999996
No 60
>PRK09687 putative lyase; Provisional
Probab=35.72 E-value=4e+02 Score=27.76 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhhcccCCHHHHHHHHHHHHcCCCHHHHH
Q 004076 558 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 637 (775)
Q Consensus 558 ~~~R~~ll~~ac~~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~ 637 (775)
...|..+...++..+++..+.. ....+.++ ++++|..+-..+.. ++.++++.-+.|..... ..+..-|.
T Consensus 142 ~~VR~~a~~aLg~~~~~~ai~~----L~~~L~d~-----~~~VR~~A~~aLg~-~~~~~~~~~~~L~~~L~-D~~~~VR~ 210 (280)
T PRK09687 142 TNVRFAVAFALSVINDEAAIPL----LINLLKDP-----NGDVRNWAAFALNS-NKYDNPDIREAFVAMLQ-DKNEEIRI 210 (280)
T ss_pred HHHHHHHHHHHhccCCHHHHHH----HHHHhcCC-----CHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhc-CCChHHHH
Confidence 3577778888888887655444 33444442 35778643222222 23456666777777664 44667788
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhcc
Q 004076 638 RILSSLASCPDVNIVLEVLNFLLS 661 (775)
Q Consensus 638 ~ll~aL~~~~d~~~l~~~L~~~l~ 661 (775)
..+.+||..+++..+..+++.+-+
T Consensus 211 ~A~~aLg~~~~~~av~~Li~~L~~ 234 (280)
T PRK09687 211 EAIIGLALRKDKRVLSVLIKELKK 234 (280)
T ss_pred HHHHHHHccCChhHHHHHHHHHcC
Confidence 899999998888888877776543
No 61
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=33.43 E-value=1.4e+02 Score=23.34 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHh
Q 004076 717 SYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKE 769 (775)
Q Consensus 717 t~~~~~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wl~~ 769 (775)
+...+.+++.||..-| -....++-+-+-......++.+-+.. +.++++.
T Consensus 12 ~kK~i~~v~~FF~~DP--lGqkIa~l~kdw~~~~~~~r~KiR~~--L~ey~k~ 60 (64)
T PF05596_consen 12 VKKWIEEVRNFFYEDP--LGQKIAQLAKDWNEICQEVRKKIRAA--LAEYCKG 60 (64)
T ss_pred HHHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 4678999999998765 44455555555555566666666655 7777764
No 62
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=32.42 E-value=59 Score=29.99 Aligned_cols=14 Identities=50% Similarity=0.674 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 004076 299 QRVATVVAHELAHQ 312 (775)
Q Consensus 299 ~~~~~~iaHElaHq 312 (775)
..+..+|.|||||-
T Consensus 59 ~f~~~vV~HELaHl 72 (156)
T COG3091 59 DFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 34778999999874
No 63
>PRK10301 hypothetical protein; Provisional
Probab=31.99 E-value=2.7e+02 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.6
Q ss_pred CCeEEEEEeCCCcCCceEEEEEEEEe
Q 004076 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (775)
Q Consensus 84 ~~~~l~i~l~~~l~~g~~~l~i~y~g 109 (775)
+...+.+.++.+|++|.|+|+-+-.+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34568888888899999987755544
No 64
>PRK01265 heat shock protein HtpX; Provisional
Probab=31.85 E-value=87 Score=33.39 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCCCCCccceeecCCCCCccccc---cccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 004076 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (775)
Q Consensus 241 ~~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (775)
.+.++.+.+..|+ |.|++-++-.+....-+... -+-|...+. ++- . -+...+..++|||++|-==+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~-~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LLK-I-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HHh-h-----CCHHHHHHHHHHHHHHHHcc
Confidence 4556666667775 46676555433211111111 134444444 221 1 13356889999999995433
No 65
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=31.72 E-value=2.2e+02 Score=30.68 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCCCCCccceeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHH-HH--------
Q 004076 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-HQ-------- 312 (775)
Q Consensus 242 ~~l~~~e~~~g~~yp~~k~d~v~~p~~~~g~mE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-Hq-------- 312 (775)
.+-++..+|++ .. --++.+...++...++|-.-+-|.++.+.. -....+..++.||+. |.
T Consensus 117 ~~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~~ 185 (349)
T PF08014_consen 117 RLQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGRA 185 (349)
T ss_pred HHHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhcccccccc
Confidence 33445556666 32 224555666788778776555555554421 134467889999994 42
Q ss_pred ----hhcCccCcCccchhHHhhhHHHHHHHHH
Q 004076 313 ----WFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (775)
Q Consensus 313 ----WfGnlVt~~~w~d~WL~EGfA~y~~~~~ 340 (775)
|++...-+. .=..||+|.+.|++.
T Consensus 186 QPl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 186 QPLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred CCcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 332221111 123799999999763
No 66
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.13 E-value=1.8e+02 Score=34.13 Aligned_cols=121 Identities=19% Similarity=0.245 Sum_probs=67.8
Q ss_pred HHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCCCCCCChhhHH-HHHHHhhhhcccCCHHHHHHHHHHHHcCCCHH
Q 004076 557 DALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIRK-AAYVAVMQKVSASDRSGYESLLRVYRETDLSQ 634 (775)
Q Consensus 557 ~~~~R~~ll~~ac~-~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~-~v~~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ 634 (775)
++..|...++.||. +|.+ ++|-.+..+.+.+ -+|-+|. -+|+....=+..|+...-..|+..--+.-+.+
T Consensus 499 eki~RGl~vGiaL~~ygrq---e~Ad~lI~el~~d-----kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDD 570 (929)
T KOG2062|consen 499 EKIIRGLAVGIALVVYGRQ---EDADPLIKELLRD-----KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDD 570 (929)
T ss_pred HHHHHHHHHhHHHHHhhhh---hhhHHHHHHHhcC-----CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchH
Confidence 46677777776665 4443 2444445555443 2455663 33333332233566666666666544455566
Q ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHhccC---cccccceeeeee--EccccHHHHHHH
Q 004076 635 EKTRILSSLA--SCPDVNIVLEVLNFLLSS---EVRSQDAVYGLA--VSIEGRETAWKW 686 (775)
Q Consensus 635 ek~~ll~aL~--~~~d~~~l~~~L~~~l~~---~ir~qd~~~~~~--v~~~g~~~~w~f 686 (775)
-|+..+-||| |++||+.+-+++.+.-.+ .||-.-. .++. .+..|...+.+-
T Consensus 571 VrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA-~ALGIaCAGtG~~eAi~l 628 (929)
T KOG2062|consen 571 VRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAA-MALGIACAGTGLKEAINL 628 (929)
T ss_pred HHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHH-HHHhhhhcCCCcHHHHHH
Confidence 6777777777 788888887777765432 4553332 2222 344466666553
No 67
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.43 E-value=2e+02 Score=33.46 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhhcccCCHHHHHHHHHHHHcCCC-HHHHHHH
Q 004076 561 RGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRI 639 (775)
Q Consensus 561 R~~ll~~ac~~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~y~~~~~-~~ek~~l 639 (775)
+...|.+++..|++..+.. +..++.+ ....|+.+|.++..++-..++.-....-+.++..|.+... ++.|...
T Consensus 463 ~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 463 IQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred eeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHH
Confidence 4557889999999776644 4445543 3457888997665555544444567788899999998765 4556665
Q ss_pred HHHh-cCCCcHHHHHHHHHHhccC
Q 004076 640 LSSL-ASCPDVNIVLEVLNFLLSS 662 (775)
Q Consensus 640 l~aL-~~~~d~~~l~~~L~~~l~~ 662 (775)
+.+| -|-.+...|+++.+.+..+
T Consensus 537 ~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 537 VLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhc
Confidence 5555 4558999999999887654
No 68
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=29.66 E-value=1.2e+02 Score=30.27 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHh
Q 004076 301 VATVVAHELAHQW 313 (775)
Q Consensus 301 ~~~~iaHElaHqW 313 (775)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 69
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=29.25 E-value=1.3e+02 Score=24.00 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCC
Q 004076 395 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 442 (775)
Q Consensus 395 g~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~ 442 (775)
=+.+|.+|...++.+.+ ..|..++++++-+-++-++|...+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 36788999999998885 456677777888889999999999988873
No 70
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=29.08 E-value=2.1e+02 Score=31.62 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=63.9
Q ss_pred HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhhcccCCHHHHHHHHHHHHcCCCHH
Q 004076 555 HLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQ 634 (775)
Q Consensus 555 ~~~~~~R~~ll~~ac~~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ 634 (775)
+.+...|...+..++.++..+++...... +.+ -+++.|. .+.+.....|+...|+-+...|.....+.
T Consensus 158 d~d~~Vra~A~raLG~l~~~~a~~~L~~a----l~d-----~~~~VR~---aA~~al~~lG~~~A~~~l~~~~~~~g~~~ 225 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRRLSESTLRLY----LRD-----SDPEVRF---AALEAGLLAGSRLAWGVCRRFQVLEGGPH 225 (410)
T ss_pred CCCHHHHHHHHHHHHhhccccchHHHHHH----HcC-----CCHHHHH---HHHHHHHHcCCHhHHHHHHHHHhccCccH
Confidence 34457899999999999988777764433 433 2578898 44444556788889988888675554443
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhccC
Q 004076 635 EKTRILSSLASCPDVNIVLEVLNFLLSS 662 (775)
Q Consensus 635 ek~~ll~aL~~~~d~~~l~~~L~~~l~~ 662 (775)
+..+..+|+..+++..+..+...+-++
T Consensus 226 -~~~l~~~lal~~~~~a~~~L~~ll~d~ 252 (410)
T TIGR02270 226 -RQRLLVLLAVAGGPDAQAWLRELLQAA 252 (410)
T ss_pred -HHHHHHHHHhCCchhHHHHHHHHhcCh
Confidence 344555666667777777777765443
No 71
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=28.86 E-value=1.7e+02 Score=26.32 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=16.8
Q ss_pred cCCeEEEEEeCCCcCCceEEEEEEE
Q 004076 83 EADEILVLEFAETLPTGMGVLAIGF 107 (775)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~y 107 (775)
.....+.+.++.+|.+|.|.|.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445677777778999999999988
No 72
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.73 E-value=4.9e+02 Score=26.06 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHhhhhcccCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhccCcccccc-eeee
Q 004076 595 LLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQD-AVYG 672 (775)
Q Consensus 595 ~i~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~y~~~~~-~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~ir~qd-~~~~ 672 (775)
.||+.++..+-..+ .+ |..+++.-.+....... +..-..|+.+|.+..++.+.-+|+...- +...+.+ ...+
T Consensus 74 ~ip~~~~~~~~g~W--~L---D~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~-p~l~s~~~~~~~ 147 (226)
T PF13934_consen 74 GIPPKYIKFIQGFW--LL---DHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG-PPLSSPEALTLY 147 (226)
T ss_pred CCCHHHHHHHHHHH--Hh---ChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC-CCCCCHHHHHHH
Confidence 48888877443222 22 55678777777655543 4556679999999999999988888653 3344444 3344
Q ss_pred ee-EccccHHHHHHHHHHHHHHH
Q 004076 673 LA-VSIEGRETAWKWLKDNWDHI 694 (775)
Q Consensus 673 ~~-v~~~g~~~~w~fl~~n~~~i 694 (775)
+. ++++...-||.|.+.+-+..
T Consensus 148 ~~~La~~~v~EAf~~~R~~~~~~ 170 (226)
T PF13934_consen 148 FVALANGLVTEAFSFQRSYPDEL 170 (226)
T ss_pred HHHHHcCCHHHHHHHHHhCchhh
Confidence 55 67778888999988876644
No 73
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=28.29 E-value=3e+02 Score=32.27 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=62.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhhcccCCHHHHHHHHHHHHcCCCH-HHH
Q 004076 558 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLS-QEK 636 (775)
Q Consensus 558 ~~~R~~ll~~ac~~g~~~ci~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~~~~~~~~g~~~~~~~l~~~y~~~~~~-~ek 636 (775)
..-+...|.++..+|++..+.. +..++.+ ....|..+|.++..++...+..-.....+.++..|.+.... +-|
T Consensus 504 ~~~~~~~LkaLgN~g~~~~i~~----l~~~i~~--~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 504 EEEKIVYLKALGNLGHPESIPV----LLPYIEG--KEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHHHHHHHHHT-GGGHHH----HHTTSTT--SS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred HHHHHHHHHHhhccCCchhhHH----HHhHhhh--ccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHH
Confidence 3556778899999999865554 4466655 22688999976655554334444567899999999987765 456
Q ss_pred HHHHHHh-cCCCcHHHHHHHHHHhccC
Q 004076 637 TRILSSL-ASCPDVNIVLEVLNFLLSS 662 (775)
Q Consensus 637 ~~ll~aL-~~~~d~~~l~~~L~~~l~~ 662 (775)
..++..| -|-.....|+++.+.+..+
T Consensus 578 iaA~~~lm~~~P~~~~l~~i~~~l~~E 604 (618)
T PF01347_consen 578 IAAYLILMRCNPSPSVLQRIAQSLWNE 604 (618)
T ss_dssp HHHHHHHHHT---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhC
Confidence 5555555 4558999999998877543
No 74
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=28.12 E-value=1.6e+02 Score=31.46 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhccC-cccccc
Q 004076 616 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQD 668 (775)
Q Consensus 616 ~~~~~~~l~~~y~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~-~ir~qd 668 (775)
+++--+.|.++...+.+......+++|||++.........++..+.+ .....|
T Consensus 213 ~~~l~~~l~~~~~~~~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e 266 (340)
T PF12069_consen 213 PDKLAEALLERLEQAPDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPE 266 (340)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChH
Confidence 46677888999988889999999999999999999988888888866 334444
No 75
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=27.55 E-value=48 Score=32.65 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=19.6
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHhhcCccC
Q 004076 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (775)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (775)
+|+.......+.-.+-.+|||||.|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 334444444455567789999999987543333
No 76
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=27.39 E-value=1.3e+02 Score=31.59 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCh--------hHHHHHHHhh
Q 004076 721 VREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE--------GHLAEAVKEL 770 (775)
Q Consensus 721 ~~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~--------~~i~~wl~~~ 770 (775)
+..++.|.+....+...+.+++-+++|+.|.+|.++.+.. ..|.+|+++.
T Consensus 227 i~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~ 284 (299)
T PF03715_consen 227 IVQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESEL 284 (299)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhc
Confidence 3457888887766788999999999999999999987654 4477888764
No 77
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=27.12 E-value=2.3e+02 Score=27.10 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=23.4
Q ss_pred CCeEEEEEeC--CCcCCc-eEEEEEEEEeccCC
Q 004076 84 ADEILVLEFA--ETLPTG-MGVLAIGFEGVLND 113 (775)
Q Consensus 84 ~~~~l~i~l~--~~l~~g-~~~l~i~y~g~~~~ 113 (775)
+-+++.|+|+ +.|+|| .+.|.+.|--.+..
T Consensus 114 dfHrvs~tlp~wqslapG~s~~~~~~YyLPiSg 146 (180)
T PF06483_consen 114 DFHRVSFTLPAWQSLAPGASVELDMVYYLPISG 146 (180)
T ss_pred ceEEEEEECCCccccCCCCEEEEeEEEEeccCC
Confidence 3457788887 479999 99999999876654
No 78
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=26.77 E-value=83 Score=30.78 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 004076 299 QRVATVVAHELAHQ 312 (775)
Q Consensus 299 ~~~~~~iaHElaHq 312 (775)
...+.++|||++|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45788999999995
No 79
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=26.33 E-value=3.1e+02 Score=22.57 Aligned_cols=39 Identities=8% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHhhc-cCCCHHHHHHHHH
Q 004076 685 KWLKDNWDHISKTWGSGFLITRFISSIVS-PFASYEKVREVEE 726 (775)
Q Consensus 685 ~fl~~n~~~i~~~~~~~~~l~~~i~~~~~-~~~t~~~~~~~~~ 726 (775)
.|+..||..+.++... +..++..+.+ .+-|+++++.+++
T Consensus 1 ~fv~~~r~~Li~~v~~---v~~ilD~L~~~~Vit~e~~~~I~a 40 (82)
T cd08330 1 HFVDQHREALIARVTN---VDPILDKLHGKKVITQEQYSEVRA 40 (82)
T ss_pred ChHHHHHHHHHHHHhh---HHHHHHHHHHCCCCCHHHHHHHHc
Confidence 4899999999999864 3444444433 5678999999888
No 80
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=24.94 E-value=40 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=22.4
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCCHHH
Q 004076 401 MLQNYLGAECFQRSLASYIKKYACSNAKTED 431 (775)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~d 431 (775)
.++.+||++.|....+.|+.++.-.+.+..+
T Consensus 54 ~~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 54 VVRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp TGGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 3467889999999999999998766555443
No 81
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=24.93 E-value=2.8e+02 Score=23.98 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.9
Q ss_pred cCCeEEEEEeCCCcCCceEEEEEE--EEe
Q 004076 83 EADEILVLEFAETLPTGMGVLAIG--FEG 109 (775)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~--y~g 109 (775)
.....|.+.+|..|..|.|.|.|. |.+
T Consensus 61 N~ps~l~~~lPa~L~~G~Y~l~V~Tq~~~ 89 (102)
T PF14734_consen 61 NKPSRLIFILPADLAAGEYTLEVRTQYSG 89 (102)
T ss_pred CCCcEEEEECcCccCceEEEEEEEEEecC
Confidence 445678888999999999988774 554
No 82
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=24.70 E-value=1.2e+02 Score=24.84 Aligned_cols=18 Identities=28% Similarity=0.768 Sum_probs=11.8
Q ss_pred HHHHHHHHHH-HHHHhhcC
Q 004076 299 QRVATVVAHE-LAHQWFGN 316 (775)
Q Consensus 299 ~~~~~~iaHE-laHqWfGn 316 (775)
..+..+|.|| +-|-||.-
T Consensus 62 a~lr~~iiheelhhrw~~r 80 (109)
T PF15641_consen 62 AELRNTIIHEELHHRWWKR 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455677776 77788753
No 83
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=24.11 E-value=1.9e+02 Score=27.70 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCccCcCc
Q 004076 297 NKQRVATVVAHELAHQWFGNLVTMEW 322 (775)
Q Consensus 297 ~~~~~~~~iaHElaHqWfGnlVt~~~ 322 (775)
.+..+..+|+|||.|.|=--...++|
T Consensus 67 ~~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 34457899999999998544444443
No 84
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=23.74 E-value=3e+02 Score=20.28 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHhhcCCCchH
Q 004076 716 ASYEKVREVEEFFSSRCKPYI 736 (775)
Q Consensus 716 ~t~~~~~~~~~Ff~~~~~~~~ 736 (775)
-|.+++..|+++|..++-+..
T Consensus 7 ~t~~q~~~L~~~f~~~~~p~~ 27 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQENPYPSK 27 (57)
T ss_dssp SSHHHHHHHHHHHHHSSSCHH
T ss_pred CCHHHHHHHHHHHHHhccccc
Confidence 478999999999998665543
No 85
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=23.71 E-value=2.1e+02 Score=28.38 Aligned_cols=39 Identities=18% Similarity=-0.014 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhcCccC-----cCccchhHHhhhHHHHHHHH
Q 004076 301 VATVVAHELAHQWFGNLVT-----MEWWTHLWLNEGFATWVSYL 339 (775)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt-----~~~w~d~WL~EGfA~y~~~~ 339 (775)
-..++|||++|-|+..-.- ...|...=.-|--|++++..
T Consensus 72 ~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~ 115 (213)
T COG2856 72 KRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAE 115 (213)
T ss_pred HHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 3568999999999975531 12222233456666666543
No 86
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=22.46 E-value=51 Score=32.09 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHh
Q 004076 299 QRVATVVAHELAHQW 313 (775)
Q Consensus 299 ~~~~~~iaHElaHqW 313 (775)
.....++||||+|.+
T Consensus 140 ~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CceehhhHHhHHHhc
Confidence 345689999999987
No 87
>PF12854 PPR_1: PPR repeat
Probab=22.17 E-value=1.4e+02 Score=19.63 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004076 562 GEIFTALALLGHKETLNEASKRFHA 586 (775)
Q Consensus 562 ~~ll~~ac~~g~~~ci~~a~~~f~~ 586 (775)
..|+...|..|. +++|.++|++
T Consensus 11 ~~lI~~~Ck~G~---~~~A~~l~~~ 32 (34)
T PF12854_consen 11 NTLIDGYCKAGR---VDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHCCC---HHHHHHHHHh
Confidence 468899999998 7889888864
No 88
>PF13205 Big_5: Bacterial Ig-like domain
Probab=21.26 E-value=5e+02 Score=21.85 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.1
Q ss_pred cCCeEEEEEeCCCcCCc-eEEEEEEEE
Q 004076 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (775)
Q Consensus 83 ~~~~~l~i~l~~~l~~g-~~~l~i~y~ 108 (775)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 55689999999999999 999999544
No 89
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=21.23 E-value=1.4e+02 Score=31.41 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCC--------CCccceeecCCCCCcccc-ccccceeecccccccCCCCcHHHHHHHHH
Q 004076 233 GKFALNVAVKTLELYKEYFAVPYS--------LPKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQRVAT 303 (775)
Q Consensus 233 ~~~~l~~~~~~l~~~e~~~g~~yp--------~~k~d~v~~p~~~~g~mE-~~gli~~~e~~ll~~~~~~~~~~~~~~~~ 303 (775)
....++...++++...++.|.+.+ .++..+|.-.....|.|- ..+-|.+.... .+.-.. ......-.-
T Consensus 145 ~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~~~~l~-~~~~~~~~W 221 (307)
T PF13402_consen 145 PEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--MNELLN-PNPLRKGGW 221 (307)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHHH--HHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--HhcccC-HhHcCCCCe
Confidence 455677778889999999997773 223367776777667776 33334443320 000000 011111245
Q ss_pred HHHHHHHHHhhcCccCcCccchhHHhhhHHHHHHHHHHhhhCC
Q 004076 304 VVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 346 (775)
Q Consensus 304 ~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~ 346 (775)
.+.||+.|+-= ..+=.|.. +-|.-...++..+.....+
T Consensus 222 G~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 222 GPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred eehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 79999999842 22111333 6788888888776665543
No 90
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=20.57 E-value=1.1e+02 Score=22.94 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccCCCHHH
Q 004076 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNK 446 (775)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~g~~l~~ 446 (775)
++..+..++.+|+.--..++|..++...+++..|.|+.+
T Consensus 2 d~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~~ 40 (54)
T PF08766_consen 2 DEEIREAIREILREADLDTVTKKQVREQLEERFGVDLSS 40 (54)
T ss_dssp HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--SH
T ss_pred HHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcHH
Confidence 566788999999988888899999999999999988753
No 91
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=20.38 E-value=3.2e+02 Score=22.96 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=11.2
Q ss_pred ecCCeEEEEEeC-CCcCCceEEEEEE
Q 004076 82 VEADEILVLEFA-ETLPTGMGVLAIG 106 (775)
Q Consensus 82 ~~~~~~l~i~l~-~~l~~g~~~l~i~ 106 (775)
....+.|.|.|. ...+||.+.|.+.
T Consensus 45 ~~npNYLFv~L~i~~akpg~~~i~~~ 70 (88)
T PF09087_consen 45 TDNPNYLFVYLDISDAKPGTFTINFK 70 (88)
T ss_dssp -SSTTEEEEEEEE-T--SEEEEEEEE
T ss_pred cCCCCEEEEEEecCCCCCcEEEEEEE
Confidence 334455555543 2566776555543
Done!