Query 004077
Match_columns 775
No_of_seqs 413 out of 3193
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 17:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.3E-52 5E-57 449.6 29.6 307 103-599 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 1.1E-50 2.3E-55 452.7 21.8 293 132-640 305-620 (639)
3 cd07478 Peptidases_S8_CspA-lik 100.0 9.4E-50 2E-54 446.5 22.6 411 138-624 1-455 (455)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 5.7E-49 1.2E-53 410.5 23.6 244 134-602 1-254 (255)
5 cd05562 Peptidases_S53_like Pe 100.0 1.2E-48 2.6E-53 411.0 23.9 271 137-633 1-274 (275)
6 cd07497 Peptidases_S8_14 Pepti 100.0 1.4E-48 3E-53 416.4 24.1 288 140-598 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 8.7E-48 1.9E-52 421.6 27.9 315 133-633 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.3E-46 2.8E-51 405.9 26.6 295 132-637 4-302 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 2.7E-46 5.8E-51 392.1 24.7 250 133-604 2-255 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 7E-45 1.5E-49 390.0 27.7 290 140-631 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 3.4E-45 7.3E-50 389.8 24.3 262 141-599 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 2.9E-45 6.4E-50 379.0 22.5 238 143-624 1-239 (239)
13 cd04857 Peptidases_S8_Tripepti 100.0 2.1E-44 4.5E-49 391.0 28.2 223 217-601 182-412 (412)
14 cd07493 Peptidases_S8_9 Peptid 100.0 1.8E-44 3.8E-49 379.5 24.3 247 142-599 1-261 (261)
15 cd07481 Peptidases_S8_Bacillop 100.0 4.1E-44 9E-49 377.2 24.8 247 140-599 1-264 (264)
16 KOG1153 Subtilisin-related pro 100.0 7.9E-44 1.7E-48 370.3 20.2 337 20-599 77-461 (501)
17 cd07487 Peptidases_S8_1 Peptid 100.0 3.2E-43 7E-48 370.9 25.3 258 140-599 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 4.5E-43 9.7E-48 371.2 24.4 264 132-597 1-273 (273)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.7E-42 5.9E-47 361.8 24.1 233 133-600 17-255 (255)
20 cd04847 Peptidases_S8_Subtilis 100.0 9.2E-43 2E-47 372.3 20.7 268 144-599 2-291 (291)
21 cd07484 Peptidases_S8_Thermita 100.0 5.6E-42 1.2E-46 360.6 25.0 240 132-601 20-259 (260)
22 cd07490 Peptidases_S8_6 Peptid 100.0 8.5E-42 1.8E-46 358.0 24.3 253 142-599 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 8.9E-42 1.9E-46 363.5 23.3 207 215-597 66-285 (285)
24 cd07494 Peptidases_S8_10 Pepti 100.0 1.6E-41 3.4E-46 361.5 23.7 251 132-603 12-287 (298)
25 cd07498 Peptidases_S8_15 Pepti 100.0 1.9E-41 4E-46 352.8 22.3 241 143-597 1-242 (242)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 2.9E-41 6.3E-46 361.6 23.9 279 136-599 2-293 (293)
27 cd07480 Peptidases_S8_12 Pepti 100.0 4.2E-41 9E-46 360.2 22.6 266 135-629 2-296 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 6.9E-41 1.5E-45 352.5 23.0 248 132-599 6-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 1.4E-40 3.1E-45 349.8 25.1 250 141-599 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 4.1E-40 8.8E-45 339.8 23.3 227 142-597 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 2.3E-40 5E-45 343.0 19.5 164 140-357 2-170 (247)
32 PF00082 Peptidase_S8: Subtila 100.0 8.6E-41 1.9E-45 355.9 16.1 275 144-633 1-282 (282)
33 cd07482 Peptidases_S8_Lantibio 100.0 7.5E-40 1.6E-44 350.9 22.6 255 142-597 1-294 (294)
34 cd04059 Peptidases_S8_Protein_ 100.0 1.3E-39 2.8E-44 349.4 19.7 247 132-599 30-297 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 4.7E-39 1E-43 330.2 22.4 222 142-599 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 5.4E-38 1.2E-42 331.4 22.0 245 139-599 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 4.1E-35 8.9E-40 312.5 26.2 363 23-633 49-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.4E-33 3.1E-38 313.3 22.6 241 220-633 310-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1.1E-33 2.3E-38 292.1 15.2 195 216-597 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.1E-30 2.3E-35 270.2 23.4 197 215-597 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 6.4E-24 1.4E-28 243.8 22.8 250 132-600 131-398 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.4E-20 5.2E-25 190.0 11.8 154 132-339 152-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 1.6E-16 3.5E-21 174.3 14.6 102 247-360 81-198 (361)
44 cd02120 PA_subtilisin_like PA_ 99.3 2.3E-11 5E-16 113.1 13.2 123 366-493 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.3 1.8E-11 3.9E-16 116.3 11.6 106 409-519 36-142 (143)
46 cd04816 PA_SaNapH_like PA_SaNa 98.9 1.1E-08 2.3E-13 94.5 9.4 88 406-493 29-121 (122)
47 cd02122 PA_GRAIL_like PA _GRAI 98.8 1.5E-08 3.3E-13 94.9 10.1 90 405-494 43-138 (138)
48 cd02127 PA_hPAP21_like PA_hPAP 98.8 2E-08 4.3E-13 91.5 10.0 89 406-495 21-117 (118)
49 cd02129 PA_hSPPL_like PA_hSPPL 98.8 1.8E-08 4E-13 91.1 9.3 83 405-487 29-115 (120)
50 cd04818 PA_subtilisin_1 PA_sub 98.7 6.1E-08 1.3E-12 88.9 10.0 88 405-493 26-117 (118)
51 cd02126 PA_EDEM3_like PA_EDEM3 98.7 6E-08 1.3E-12 89.7 9.4 86 406-492 27-124 (126)
52 PF02225 PA: PA domain; Inter 98.7 2.2E-08 4.8E-13 89.0 5.7 79 406-484 19-101 (101)
53 cd02130 PA_ScAPY_like PA_ScAPY 98.7 9.9E-08 2.2E-12 88.0 9.5 86 407-493 32-121 (122)
54 cd00538 PA PA: Protease-associ 98.7 9.4E-08 2E-12 88.6 9.1 88 405-492 29-124 (126)
55 PF05922 Inhibitor_I9: Peptida 98.6 5.3E-08 1.2E-12 83.0 5.7 76 25-106 1-82 (82)
56 cd02132 PA_GO-like PA_GO-like: 98.6 1.6E-07 3.6E-12 88.4 9.5 84 406-492 48-137 (139)
57 cd02125 PA_VSR PA_VSR: Proteas 98.6 1.9E-07 4.1E-12 86.3 9.3 88 406-493 22-126 (127)
58 cd04817 PA_VapT_like PA_VapT_l 98.6 1.8E-07 3.9E-12 87.2 8.7 75 413-487 49-134 (139)
59 cd02124 PA_PoS1_like PA_PoS1_l 98.6 3.6E-07 7.8E-12 84.7 10.0 89 404-493 39-128 (129)
60 PF06280 DUF1034: Fn3-like dom 98.5 1.1E-06 2.3E-11 79.8 12.3 91 678-771 1-112 (112)
61 cd04813 PA_1 PA_1: Protease-as 98.5 3.5E-07 7.6E-12 83.2 8.9 81 405-487 26-112 (117)
62 cd02123 PA_C_RZF_like PA_C-RZF 98.4 8.1E-07 1.8E-11 85.1 9.4 84 406-489 50-142 (153)
63 KOG3525 Subtilisin-like propro 98.4 7.5E-06 1.6E-10 91.1 17.1 76 559-634 250-325 (431)
64 COG4934 Predicted protease [Po 98.2 9.5E-06 2.1E-10 97.1 12.7 95 249-355 288-395 (1174)
65 cd04819 PA_2 PA_2: Protease-as 98.2 1.9E-05 4.2E-10 73.2 12.0 78 413-490 37-123 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.6 0.00023 5E-09 66.7 8.0 79 414-492 33-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.0012 2.7E-08 64.4 6.4 72 416-487 51-156 (183)
68 KOG2442 Uncharacterized conser 97.0 0.0018 4E-08 70.3 8.2 82 416-497 91-178 (541)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.5 0.0033 7.2E-08 58.9 4.9 50 406-455 33-100 (142)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.4 0.005 1.1E-07 57.4 5.0 50 406-455 35-96 (137)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 96.2 0.0068 1.5E-07 57.6 5.2 51 406-456 33-101 (151)
72 PF14874 PapD-like: Flagellar- 95.5 0.48 1E-05 41.8 13.9 82 685-774 20-101 (102)
73 cd02131 PA_hNAALADL2_like PA_h 95.4 0.018 3.9E-07 54.0 4.1 39 417-455 37-75 (153)
74 PF10633 NPCBM_assoc: NPCBM-as 95.2 0.12 2.6E-06 43.3 8.5 64 685-752 5-69 (78)
75 KOG3920 Uncharacterized conser 95.0 0.026 5.7E-07 52.2 3.8 88 404-492 72-169 (193)
76 cd02121 PA_GCPII_like PA_GCPII 94.8 0.028 6E-07 56.9 4.0 40 416-455 67-106 (220)
77 KOG4628 Predicted E3 ubiquitin 94.6 0.078 1.7E-06 56.8 6.7 81 407-487 63-150 (348)
78 PF11614 FixG_C: IG-like fold 91.6 4.9 0.00011 36.5 13.1 54 687-741 33-86 (118)
79 cd04821 PA_M28_1_2 PA_M28_1_2: 89.2 0.51 1.1E-05 45.3 4.4 43 412-454 41-102 (157)
80 COG1470 Predicted membrane pro 85.5 4.8 0.0001 44.6 9.6 71 685-760 397-468 (513)
81 KOG1114 Tripeptidyl peptidase 79.7 1.3 2.9E-05 52.5 2.9 24 137-160 77-100 (1304)
82 PF06030 DUF916: Bacterial pro 78.9 32 0.00069 31.5 11.1 70 684-760 26-119 (121)
83 PF00345 PapD_N: Pili and flag 72.1 39 0.00085 30.6 10.1 51 687-739 16-73 (122)
84 COG1470 Predicted membrane pro 68.1 43 0.00094 37.4 10.6 55 685-740 284-344 (513)
85 TIGR02745 ccoG_rdxA_fixG cytoc 65.1 39 0.00085 38.1 10.0 55 686-741 347-401 (434)
86 PF00635 Motile_Sperm: MSP (Ma 60.1 46 0.001 29.2 7.9 53 685-740 18-70 (109)
87 PF07718 Coatamer_beta_C: Coat 50.1 1.4E+02 0.0031 28.0 9.3 67 687-760 71-138 (140)
88 PLN03080 Probable beta-xylosid 48.3 95 0.0021 38.0 10.2 80 686-769 685-778 (779)
89 PF02402 Lysis_col: Lysis prot 46.9 6.7 0.00014 28.5 0.1 21 1-21 1-21 (46)
90 PRK15098 beta-D-glucoside gluc 46.7 55 0.0012 40.1 7.9 53 685-740 667-728 (765)
91 PF07610 DUF1573: Protein of u 43.3 94 0.002 22.8 5.8 44 691-737 2-45 (45)
92 PF03032 Brevenin: Brevenin/es 41.7 14 0.0003 27.5 1.1 22 1-22 3-24 (46)
93 PF00927 Transglut_C: Transglu 41.7 2.4E+02 0.0053 24.7 9.5 56 683-740 13-77 (107)
94 PF08139 LPAM_1: Prokaryotic m 40.5 17 0.00036 23.4 1.1 16 1-16 7-22 (25)
95 KOG2018 Predicted dinucleotide 39.6 35 0.00076 36.2 4.0 82 249-333 137-244 (430)
96 PF05506 DUF756: Domain of unk 37.5 2.1E+02 0.0046 24.3 8.0 46 687-737 20-65 (89)
97 PF07705 CARDB: CARDB; InterP 36.2 1.9E+02 0.0041 24.5 7.8 52 684-739 18-71 (101)
98 PF08260 Kinin: Insect kinin p 36.2 17 0.00036 16.6 0.4 6 511-516 3-8 (8)
99 smart00237 Calx_beta Domains i 36.0 2.4E+02 0.0051 24.1 8.1 63 675-739 8-75 (90)
100 PF12690 BsuPI: Intracellular 35.1 1.8E+02 0.0038 24.6 7.0 52 687-739 2-70 (82)
101 PF05753 TRAP_beta: Translocon 30.1 3.5E+02 0.0076 26.6 9.2 54 685-739 38-97 (181)
102 PRK15019 CsdA-binding activato 28.4 57 0.0012 31.0 3.1 33 559-592 77-109 (147)
103 PF13956 Ibs_toxin: Toxin Ibs, 28.0 36 0.00078 19.9 1.0 12 1-12 1-12 (19)
104 PF02845 CUE: CUE domain; Int 28.0 61 0.0013 23.3 2.6 24 575-598 5-28 (42)
105 PF04744 Monooxygenase_B: Mono 27.8 1.7E+02 0.0037 31.9 6.9 53 685-739 263-335 (381)
106 PF13940 Ldr_toxin: Toxin Ldr, 27.4 51 0.0011 22.6 1.8 13 566-578 14-26 (35)
107 TIGR03391 FeS_syn_CsdE cystein 27.1 62 0.0014 30.3 3.1 34 558-592 71-104 (138)
108 cd08523 Reeler_cohesin_like Do 26.3 3.2E+02 0.0069 25.2 7.4 20 721-740 74-93 (124)
109 PF02601 Exonuc_VII_L: Exonucl 25.7 1.9E+02 0.0041 31.1 7.2 73 253-337 39-118 (319)
110 PF01345 DUF11: Domain of unkn 24.4 2E+02 0.0042 23.5 5.4 32 684-715 40-72 (76)
111 PRK09296 cysteine desufuration 23.8 78 0.0017 29.7 3.1 33 559-592 67-99 (138)
112 smart00635 BID_2 Bacterial Ig- 23.5 2.3E+02 0.0049 23.6 5.7 25 714-739 4-28 (81)
113 TIGR02052 MerP mercuric transp 23.1 63 0.0014 26.6 2.3 17 1-17 1-17 (92)
114 PF00553 CBM_2: Cellulose bind 23.1 4.9E+02 0.011 22.6 8.0 32 685-716 13-45 (101)
115 COG2166 sufE Cysteine desulfur 23.0 77 0.0017 29.9 2.9 32 560-592 73-104 (144)
116 PF02657 SufE: Fe-S metabolism 22.6 89 0.0019 28.7 3.3 33 560-593 59-91 (125)
117 PF11777 DUF3316: Protein of u 22.0 51 0.0011 29.7 1.5 19 1-19 1-19 (114)
118 cd00407 Urease_beta Urease bet 21.2 1.8E+02 0.0038 25.7 4.5 51 685-736 18-82 (101)
119 PF04255 DUF433: Protein of un 20.8 91 0.002 24.1 2.5 39 557-595 10-54 (56)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-52 Score=449.56 Aligned_cols=307 Identities=56% Similarity=0.930 Sum_probs=256.6
Q ss_pred ccccccCCccccccchhhhcccCcccccccccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccC
Q 004077 103 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 182 (775)
Q Consensus 103 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~ 182 (775)
++|+++++++++|+... |. ..+|..+++|+||+|||||||||++||+|++....+++..|.+.|..+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~ 71 (307)
T cd04852 1 YQLHTTRSPDFLGLPGA----WG-----GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFN 71 (307)
T ss_pred CCccccCCHHHcCCCCC----CC-----cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcC
Confidence 46889999999999865 11 0367789999999999999999999999999988899999999999988887
Q ss_pred cccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEE
Q 004077 183 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYK 262 (775)
Q Consensus 183 ~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~k 262 (775)
...|++|+++.++|.+++..... .....+..++.|..||||||||||||+...+.... +...+.+.||||+|+|+.+|
T Consensus 72 ~~~~~~ki~g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~-~~~~~~~~GvAP~a~l~~~k 149 (307)
T cd04852 72 PFSCNNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVG-GFAFGTASGVAPRARIAVYK 149 (307)
T ss_pred ccCcCCeEEEEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCccccccc-ccccccEEEECCCCeEEEEE
Confidence 77899999999999887554322 12233456788999999999999999876654444 55566789999999999999
Q ss_pred eecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC
Q 004077 263 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 342 (775)
Q Consensus 263 v~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~ 342 (775)
+++.. + .+..+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+...+
T Consensus 150 v~~~~--~------~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~ 220 (307)
T cd04852 150 VCWPD--G------GCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220 (307)
T ss_pred EecCC--C------CccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCc
Confidence 99874 2 4789999999999999999999999998432 4556778888889999999999999999988777
Q ss_pred CCCCCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceece
Q 004077 343 LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGK 422 (775)
Q Consensus 343 ~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 422 (775)
..+..||+++|||++
T Consensus 221 ~~~~~~~vi~Vga~~----------------------------------------------------------------- 235 (307)
T cd04852 221 VPNVAPWVTTVAAST----------------------------------------------------------------- 235 (307)
T ss_pred ccCCCCCeEEEEecc-----------------------------------------------------------------
Confidence 888889999999721
Q ss_pred EEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEee
Q 004077 423 IVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLH 502 (775)
Q Consensus 423 ivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 502 (775)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC
Q 004077 503 TQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH 582 (775)
Q Consensus 503 ~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 582 (775)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++
T Consensus 236 ----------------------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~ 290 (307)
T cd04852 236 ----------------------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAH 290 (307)
T ss_pred ----------------------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHC
Confidence 477999999999999874211 1112233689999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhccc
Q 004077 583 PDWSSAAIRSALMTTAW 599 (775)
Q Consensus 583 P~~s~~~ik~~L~~TA~ 599 (775)
|.|+|++||++|++||+
T Consensus 291 p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 291 PDWSPAAIKSALMTTAY 307 (307)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 99999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.1e-50 Score=452.69 Aligned_cols=293 Identities=20% Similarity=0.186 Sum_probs=211.1
Q ss_pred cccc--cCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCccccccee---eeeeecccccccccCC
Q 004077 132 DLLS--KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKI---IGARYYLKGFEQLYGP 206 (775)
Q Consensus 132 ~~~~--~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~ki---ig~~~~~~~~~~~~~~ 206 (775)
++|. .+.+|+||+|||||||||++||||.+.-... +....|.. .++ .+++.. +.+++|.++
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----giD--dD~nG~vdd~~G~nfVd~------- 370 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GID--DDNNGNVDDEYGANFVNN------- 370 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----ccc--cccCCcccccccccccCC-------
Confidence 5555 3678999999999999999999998541000 00000100 000 001111 122333321
Q ss_pred CCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004077 207 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 286 (775)
Q Consensus 207 ~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~a 286 (775)
...|.|+.||||||||||||... ....+.||||+|+|+++|+++.. | .+..+++++|
T Consensus 371 ------~~~P~D~~GHGTHVAGIIAA~gn---------N~~Gi~GVAP~AkLi~vKVld~~--G------~G~~sdI~~A 427 (639)
T PTZ00262 371 ------DGGPMDDNYHGTHVSGIISAIGN---------NNIGIVGVDKRSKLIICKALDSH--K------LGRLGDMFKC 427 (639)
T ss_pred ------CCCCCCCCCcchHHHHHHhcccc---------CCCceeeeecccccceEEEecCC--C------CccHHHHHHH
Confidence 23568899999999999999732 22346799999999999999876 4 4688999999
Q ss_pred HHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC--------------CCC----CCC
Q 004077 287 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--------------LSN----LAP 348 (775)
Q Consensus 287 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p 348 (775)
|+||++.|++|||||||+. .....+..++.+|.++|++||+||||+|+.... ++. ..|
T Consensus 428 I~yA~~~GA~VINmSlG~~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~ 503 (639)
T PTZ00262 428 FDYCISREAHMINGSFSFD----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLR 503 (639)
T ss_pred HHHHHHCCCCEEEeccccC----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCC
Confidence 9999999999999999983 234567788899999999999999999864221 111 135
Q ss_pred ceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEec
Q 004077 349 WLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMR 428 (775)
Q Consensus 349 ~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 428 (775)
++|+|||++.+..
T Consensus 504 nVIaVGAv~~d~~------------------------------------------------------------------- 516 (639)
T PTZ00262 504 NVITVSNLIKDKN------------------------------------------------------------------- 516 (639)
T ss_pred CEEEEeeccCCCC-------------------------------------------------------------------
Confidence 6777777532110
Q ss_pred CCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCc
Q 004077 429 GSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPF 508 (775)
Q Consensus 429 g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 508 (775)
....
T Consensus 517 ----------------------------------------------------------------------------~~~s 520 (639)
T PTZ00262 517 ----------------------------------------------------------------------------NQYS 520 (639)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 0112
Q ss_pred cccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHH
Q 004077 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 588 (775)
Q Consensus 509 ~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~ 588 (775)
++.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+++++
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3456666532 34999999999999987 689999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCCeeeec
Q 004077 589 AIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDA 640 (775)
Q Consensus 589 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~ 640 (775)
+|+++|++||.+++... ....| +|+||+++|++.++.+..
T Consensus 581 qV~~iL~~TA~~l~~~~-----------n~~~w-gG~LDa~kAV~~Ai~~~~ 620 (639)
T PTZ00262 581 EVIRILKESIVQLPSLK-----------NKVKW-GGYLDIHHAVNLAIASKH 620 (639)
T ss_pred HHHHHHHHhCccCCCCC-----------Ccccc-CcEEcHHHHHHHHHhccc
Confidence 99999999998764320 12223 389999999997775433
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=9.4e-50 Score=446.47 Aligned_cols=411 Identities=24% Similarity=0.229 Sum_probs=244.7
Q ss_pred CCCCceEEEEeecCCCCCCCCCCC-CCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCC
Q 004077 138 RYGQDVIVGLVDNGVWPESKSFSD-EGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 216 (775)
Q Consensus 138 ~~G~GV~VgVIDtGid~~Hp~f~d-~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 216 (775)
++|+||+|||||||||+.||+|++ ++.+++...|++....+.. .....+...+.............+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 479999999999999999999985 5678899999887654321 111222222222100000000011223456
Q ss_pred CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCcc--CCCCCCHHHHHHHHHHHHhC-
Q 004077 217 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA--AGNTCFEADMLAAIDDAIRD- 293 (775)
Q Consensus 217 ~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~--~~~~~~~~~i~~ai~~a~~~- 293 (775)
.|..||||||||||||+.. ....+.||||+|+|+++|++........+ ....+..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~---------~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGD---------NNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCchHHHHHHHhcCCC---------CCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 7899999999999999843 23446799999999999999876210000 00125788999999999874
Q ss_pred ----CceEEEEccCCCCCCCCCccHHHHHHHHHHcC-CcEEEEecCCCCCCCCCCCCC---C---C-ceEEecccccccc
Q 004077 294 ----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNL---A---P-WLITVGAGSLDRD 361 (775)
Q Consensus 294 ----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~---~---p-~vitVgAs~~~~~ 361 (775)
.++|||||||...+.+...++++.+++.+..+ |++||+||||+|....+.... . . --+.|+... ..
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KG 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cc
Confidence 57899999999767778889999999988776 999999999999753333221 0 0 113333211 11
Q ss_pred cccceEeCCCcEEe-------eeeeccCCC----CcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCC
Q 004077 362 FVGPVVLGTGMEII-------GKTVTPYNL----KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 430 (775)
Q Consensus 362 ~~~~~~~~~~~~~~-------g~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 430 (775)
+..++....-..+. |+....... ...+.+++. ..++.+..+..
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~--------------------------~t~i~v~y~~~ 277 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFE--------------------------GTTVYVYYYLP 277 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEEC--------------------------CeEEEEEEcCC
Confidence 11111110000000 000000000 000011100 11111111110
Q ss_pred cc------hhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEe----ceEE
Q 004077 431 GF------KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQ----ARTV 500 (775)
Q Consensus 431 ~~------~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~----~~~~ 500 (775)
.. ...+.. -...|..-+.++.... .......|+|...+...+.. ++......+.++.. ..++
T Consensus 278 ~~~~g~~~i~i~~~-~~~~GiW~i~~~~~~~---~~g~~~~Wlp~~~~~~~~t~----f~~~~~~~tit~Pa~~~~vitV 349 (455)
T cd07478 278 EPYTGDQLIFIRFK-NIKPGIWKIRLTGVSI---TDGRFDAWLPSRGLLSENTR----FLEPDPYTTLTIPGTARSVITV 349 (455)
T ss_pred CCCCCCeEEEEEcc-CCCccceEEEEEeccC---CCceEEEEecCcCcCCCCCE----eecCCCCceEecCCCCCCcEEE
Confidence 00 000011 1222333333333211 01112334554333322221 12222222332221 1122
Q ss_pred eecC-CCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHH
Q 004077 501 LHTQ-PAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLK 579 (775)
Q Consensus 501 ~~~~-~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 579 (775)
.... ..+.++.||||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+
T Consensus 350 ga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~ 414 (455)
T cd07478 350 GAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLL 414 (455)
T ss_pred EEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHH
Confidence 2222 245699999999998 699999999999999999986 789999999999999999999999
Q ss_pred HhC------CCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCcccee
Q 004077 580 AIH------PDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSG 624 (775)
Q Consensus 580 q~~------P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 624 (775)
|++ |.+++++||++|++||++... ..+++++||||
T Consensus 415 ~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 415 QWGIVRGNDPYLYGEKIKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HhchhccCCCCCCHHHHHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 985 557999999999999998752 34688999998
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.7e-49 Score=410.50 Aligned_cols=244 Identities=27% Similarity=0.332 Sum_probs=198.4
Q ss_pred cccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCC
Q 004077 134 LSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDD 213 (775)
Q Consensus 134 ~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 213 (775)
|.++++|+||+|||||||||.+||+|.+.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 888999999999999999999999996310 0011111 1
Q ss_pred CCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC
Q 004077 214 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 293 (775)
Q Consensus 214 ~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~ 293 (775)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+. + ....+.++++|+||+++
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~------------~~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~a~~~a~~~ 98 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE------------QCLGFAPDAEIYIFRVFTNN--Q------VSYTSWFLDAFNYAILT 98 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC------------CceeECCCCEEEEEEeecCC--C------CchHHHHHHHHHhhhhc
Confidence 2345778999999999998731 24699999999999999876 3 35678899999999999
Q ss_pred CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC--CCCCceEEecccccccccccceEeCCC
Q 004077 294 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS--NLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 294 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
+++|||||||... +...++..++.++.++|++||+||||+|+...+.. ...+++|+|||++.
T Consensus 99 ~~~Vin~S~G~~~---~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------- 162 (255)
T cd07479 99 KIDVLNLSIGGPD---FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------- 162 (255)
T ss_pred CCCEEEeeccCCC---CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------
Confidence 9999999999832 33456767778888999999999999997655443 34578999998532
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCCCC
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKP 527 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~----~d~~~KP 527 (775)
.+.++.|||+|++.. ..+++||
T Consensus 163 ------------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~ 188 (255)
T cd07479 163 ------------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKP 188 (255)
T ss_pred ------------------------------------------------------CCccccccCCCCCcccccCCCCCcCc
Confidence 246789999996531 2478899
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCC----CCCHHHHHHHHHhcccccC
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP----DWSSAAIRSALMTTAWMKN 602 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~~s~~~ik~~L~~TA~~~~ 602 (775)
||.|||.+|+++... +.|..++|||||||||||++|||+|++| .++|++||++|++||++++
T Consensus 189 di~apG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 189 DIVTYGSGVYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cEEecCCCeeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999999999988765 6788999999999999999999999998 7899999999999999864
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.2e-48 Score=410.99 Aligned_cols=271 Identities=26% Similarity=0.220 Sum_probs=202.5
Q ss_pred CCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCC
Q 004077 137 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 216 (775)
Q Consensus 137 ~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 216 (775)
+++|+||+|||||||||..||+|.+-..+ ++.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-----------------------~l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-----------------------DLPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-----------------------CCCcceeeccc-------------cCCC
Confidence 57999999999999999999865322111 11111111110 1234
Q ss_pred CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCce
Q 004077 217 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 296 (775)
Q Consensus 217 ~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvd 296 (775)
.|..||||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++
T Consensus 45 ~d~~gHGT~vAgii~-------------------GvAP~a~l~~~~~~-------------~~~~~i~~ai~~a~~~g~~ 92 (275)
T cd05562 45 SGGGDEGRAMLEIIH-------------------DIAPGAELAFHTAG-------------GGELDFAAAIRALAAAGAD 92 (275)
T ss_pred CCCCchHHHHHHHHh-------------------ccCCCCEEEEEecC-------------CCHHHHHHHHHHHHHcCCC
Confidence 578899999999994 89999999998862 3578999999999999999
Q ss_pred EEEEccCCCCCCCCCccHHHHHHHHHHcC-CcEEEEecCCCCCCCC-CCCCCCCceEEecccccccccccceEeCCCcEE
Q 004077 297 VLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 374 (775)
Q Consensus 297 VIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 374 (775)
|||||||......+.+..+..+++++.++ |++||+||||+|+... ..+...|++|+|||++.+.........+
T Consensus 93 Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----- 167 (275)
T cd05562 93 IIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----- 167 (275)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----
Confidence 99999998432223345678888888887 9999999999997533 2344669999999976543210000000
Q ss_pred eeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCC
Q 004077 375 IGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 454 (775)
Q Consensus 375 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 454 (775)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCC
Q 004077 455 ANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGL 534 (775)
Q Consensus 455 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~ 534 (775)
........+.|+++||+. ++++||||+|||.
T Consensus 168 -----------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg 198 (275)
T cd05562 168 -----------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDG 198 (275)
T ss_pred -----------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCc
Confidence 000012345678899987 5889999999975
Q ss_pred -cEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCC
Q 004077 535 -NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADG 613 (775)
Q Consensus 535 -~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 613 (775)
++.++... +.|..++|||||||||||++|||+|++|+|++++||++|++||+++...
T Consensus 199 ~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~--------- 256 (275)
T cd05562 199 VNGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP--------- 256 (275)
T ss_pred ccccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC---------
Confidence 44554443 6899999999999999999999999999999999999999999987532
Q ss_pred CCCCCCccceeccCccccCC
Q 004077 614 SIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 614 ~~~~~~~~G~G~vn~~~Al~ 633 (775)
..+..||||+||+.+|++
T Consensus 257 --g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 257 --GYDNASGSGLVDADRAVA 274 (275)
T ss_pred --CCCCCcCcCcccHHHHhh
Confidence 356789999999999986
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-48 Score=416.41 Aligned_cols=288 Identities=26% Similarity=0.246 Sum_probs=190.3
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 219 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 219 (775)
|+||+|||||||||++||+|.+... ..|.- .| .+..++..+.++..+ ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~------~~---d~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKL------KF---DYKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCccc------cc---CcCCCccCCcCCCCC------------ccCCCCCc
Confidence 8999999999999999999964321 00100 00 000111111211111 11246789
Q ss_pred CCccccchhhhcccCCCCCCccCCc-CCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHH-------HHHHH-
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGF-AEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLA-------AIDDA- 290 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~-~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~-------ai~~a- 290 (775)
.||||||||||||+.....+.+ ++ ....+.||||+|+|+.+|+|... + .+....+.. +++|+
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~-~~~~~~g~~GVAP~A~l~~vkvl~~~--~------~~~~~~~~~g~~~~~~~~~~~~ 126 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLY-GYTGKFLIRGIAPDAKIAAVKALWFG--D------VIYAWLWTAGFDPVDRKLSWIY 126 (311)
T ss_pred cccchhHHHHHhccCccccccc-ccccccceeeeCCCCEEEEEEEEecC--C------cchhhhhhhccchhhhhhhhhh
Confidence 9999999999999853322111 11 12357899999999999999754 2 122333333 34444
Q ss_pred -HhCCceEEEEccCCCCCC----CCCccHHHHHHHHH-HcCCcEEEEecCCCCCCCCCCCC--CCCceEEeccccccccc
Q 004077 291 -IRDGVHVLSISIGTNQPF----AFNRDGIAIGALNA-VKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDF 362 (775)
Q Consensus 291 -~~~gvdVIn~SlG~~~~~----~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~~~--~~p~vitVgAs~~~~~~ 362 (775)
.+++++|||||||..... ....+..+...+.+ .++|++||+||||+|+...+... .++++|+|||++.....
T Consensus 127 ~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~ 206 (311)
T cd07497 127 TGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYR 206 (311)
T ss_pred ccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCccc
Confidence 367999999999983221 11123333333432 48999999999999986555444 55899999997642210
Q ss_pred ccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhh
Q 004077 363 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 442 (775)
Q Consensus 363 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~ 442 (775)
+... +.
T Consensus 207 ~~~~-----------------------~~--------------------------------------------------- 212 (311)
T cd07497 207 PFYL-----------------------FG--------------------------------------------------- 212 (311)
T ss_pred chhh-----------------------hc---------------------------------------------------
Confidence 0000 00
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004077 443 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 522 (775)
Q Consensus 443 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d 522 (775)
......+.++.||||||+. +
T Consensus 213 ----------------------------------------------------------~~~~~~~~~~~fSs~Gp~~--~ 232 (311)
T cd07497 213 ----------------------------------------------------------YLPGGSGDVVSWSSRGPSI--A 232 (311)
T ss_pred ----------------------------------------------------------cccCCCCCccccccCCCCc--c
Confidence 0001145789999999998 5
Q ss_pred CCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCC------CCCHHHHHHHHHh
Q 004077 523 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP------DWSSAAIRSALMT 596 (775)
Q Consensus 523 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~~s~~~ik~~L~~ 596 (775)
+++||||+|||++|+++.+....... ......|..++|||||||||||++|||+|++| .++|++||++|++
T Consensus 233 g~~kPdv~ApG~~i~s~~~~~~~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~ 309 (311)
T cd07497 233 GDPKPDLAAIGAFAWAPGRVLDSGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMS 309 (311)
T ss_pred cCCCCceeccCcceEeecccCCCCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHh
Confidence 99999999999999998765321000 01124799999999999999999999999986 5899999999999
Q ss_pred cc
Q 004077 597 TA 598 (775)
Q Consensus 597 TA 598 (775)
||
T Consensus 310 tA 311 (311)
T cd07497 310 TA 311 (311)
T ss_pred cC
Confidence 97
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=8.7e-48 Score=421.61 Aligned_cols=315 Identities=29% Similarity=0.363 Sum_probs=234.5
Q ss_pred ccccCC-CCCceEEEEeecCCCCCCCCCCCCCCCCCCC-----CccceeecCCccCcccccceeeeeeecccccccccCC
Q 004077 133 LLSKAR-YGQDVIVGLVDNGVWPESKSFSDEGMGPVPK-----SWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP 206 (775)
Q Consensus 133 ~~~~~~-~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~-----~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~ 206 (775)
+|+++. +|+||+|||||||||++||+|++....+... .+...+..+ ...+++.+++.+++|.++...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc----
Confidence 688877 9999999999999999999998654322110 111111111 122456778888888765221
Q ss_pred CCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004077 207 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 286 (775)
Q Consensus 207 ~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~a 286 (775)
.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|++.....+ .+....+++|
T Consensus 75 ------~~~~~~~~~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v~~~~~~~------~~~~~~~~~a 136 (346)
T cd07475 75 ------ILDEDDGSSHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKVFSNPEGG------STYDDAYAKA 136 (346)
T ss_pred ------cCCCCCCCCcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEeecCCCCC------CCCHHHHHHH
Confidence 11245788999999999999843211 12356899999999999999741112 4788899999
Q ss_pred HHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC----------------CCCCce
Q 004077 287 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS----------------NLAPWL 350 (775)
Q Consensus 287 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~~p~v 350 (775)
++++++.|++|||||||...........+..++.++.++|++||+||||+|....... ...+++
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 9999999999999999995443355567788888999999999999999985432211 123556
Q ss_pred EEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCC
Q 004077 351 ITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 430 (775)
Q Consensus 351 itVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 430 (775)
|+||+++...
T Consensus 217 i~Vga~~~~~---------------------------------------------------------------------- 226 (346)
T cd07475 217 LTVASANKKV---------------------------------------------------------------------- 226 (346)
T ss_pred eEEeeccccc----------------------------------------------------------------------
Confidence 6666543100
Q ss_pred cchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc
Q 004077 431 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 510 (775)
Q Consensus 431 ~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 510 (775)
.....+.++
T Consensus 227 -----------------------------------------------------------------------~~~~~~~~~ 235 (346)
T cd07475 227 -----------------------------------------------------------------------PNPNGGQMS 235 (346)
T ss_pred -----------------------------------------------------------------------CCCCCCccC
Confidence 011245788
Q ss_pred cccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHh----CCCCC
Q 004077 511 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWS 586 (775)
Q Consensus 511 ~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s 586 (775)
.||+|||+. +.++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|+
T Consensus 236 ~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~ 300 (346)
T cd07475 236 GFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLS 300 (346)
T ss_pred CCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999998 589999999999999999876 68999999999999999999999998 78999
Q ss_pred HHH----HHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCC
Q 004077 587 SAA----IRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 587 ~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
+.+ ||.+|++||.+.... ...+.++.+.++|+|+||+.+||+
T Consensus 301 ~~~~~~~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 301 GEELVDLVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 876 788899999853211 123456788899999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-46 Score=405.95 Aligned_cols=295 Identities=30% Similarity=0.340 Sum_probs=228.4
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||+|||++||+|.+.-.. +.++.+.++|..+.... .+...
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~---~~~~~ 59 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDG---TNPPV 59 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCccccc---ccCCC
Confidence 7899999999999999999999999999753110 11233333443221110 01112
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
+...+.|..||||||||||+|...+ ..+.||||+|+|+.+|++... + ....+.+++++++|+
T Consensus 60 ~~~~~~d~~gHGT~vAgiia~~~~~----------~~~~GiAp~a~i~~~~v~~~~--~------~~~~~~~~~ai~~a~ 121 (312)
T cd07489 60 PDDDPMDCQGHGTHVAGIIAANPNA----------YGFTGVAPEATLGAYRVFGCS--G------STTEDTIIAAFLRAY 121 (312)
T ss_pred CCCCCCCCCCcHHHHHHHHhcCCCC----------CceEEECCCCEEEEEEeecCC--C------CCCHHHHHHHHHHHH
Confidence 2345677899999999999997422 346799999999999999865 3 467888999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC---CCCCCCCceEEecccccccccccceEe
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVL 368 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~ 368 (775)
+++++|||||||... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 122 ~~~~~iIn~S~g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 122 EDGADVITASLGGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred hcCCCEEEeCCCcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 999999999999832 344577878888899999999999999986532 2233457888888631
Q ss_pred CCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEE
Q 004077 369 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 448 (775)
Q Consensus 369 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~ 448 (775)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCc
Q 004077 449 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 528 (775)
Q Consensus 449 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPD 528 (775)
+.||+|||+. +...|||
T Consensus 189 -------------------------------------------------------------~~~s~~g~~~--~~~~kpd 205 (312)
T cd07489 189 -------------------------------------------------------------SYFSSWGPTN--ELYLKPD 205 (312)
T ss_pred -------------------------------------------------------------CCccCCCCCC--CCCcCcc
Confidence 4689999987 4889999
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC-CCCCHHHHHHHHHhcccccCCCCCc
Q 004077 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-PDWSSAAIRSALMTTAWMKNNKALP 607 (775)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~~s~~~ik~~L~~TA~~~~~~g~~ 607 (775)
|+|||++|+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.+....+..
T Consensus 206 v~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~ 274 (312)
T cd07489 206 VAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT 274 (312)
T ss_pred EEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCC
Confidence 9999999999987622 358999999999999999999999999 9999999999999999987654211
Q ss_pred ccCCCCCCCCCCccceeccCccccCCCCee
Q 004077 608 ITNADGSIATPFSFGSGHFRPTKAADPGLV 637 (775)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv 637 (775)
- .....+++.++|+|+||+.+|++..-.
T Consensus 275 ~--~~~~~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 275 S--ALPDLAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred c--cccCCCCHhhcCcceeeHHHHhcCCcc
Confidence 0 001146778999999999999996443
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=2.7e-46 Score=392.13 Aligned_cols=250 Identities=27% Similarity=0.304 Sum_probs=203.5
Q ss_pred ccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCC
Q 004077 133 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 212 (775)
Q Consensus 133 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 212 (775)
+|..+++|+||+|||||+|||++||+|++..+.+. ..+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc-------------c
Confidence 79999999999999999999999999975422110 00000 0
Q ss_pred CCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004077 213 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 292 (775)
Q Consensus 213 ~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 292 (775)
.....|..+|||||||||+|+.. ..+.||||+|+|+.+|++.....+ ++..++++||+||++
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~-----------~~~~GvAp~a~i~~~~v~~~~~~~-------~~~~~i~~ai~~a~~ 104 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPC-----------SSVEGIAPLCRGLNIPIFAEDRRG-------CSQLDLARAINLALE 104 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCC-----------CCceeECcCCeEEEEEEEeCCCCC-------CCHHHHHHHHHHHHH
Confidence 12345678999999999998731 135799999999999999865322 457899999999999
Q ss_pred CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCc
Q 004077 293 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGM 372 (775)
Q Consensus 293 ~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 372 (775)
+|++|||||||...........+..+++.+.++|++||+||||+|.....++...|++|+|||++.
T Consensus 105 ~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------- 170 (267)
T cd07476 105 QGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD-------------- 170 (267)
T ss_pred CCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC--------------
Confidence 999999999998433334456678888899999999999999999776666667799999998542
Q ss_pred EEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEec
Q 004077 373 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 452 (775)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n 452 (775)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeC
Q 004077 453 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 532 (775)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~AP 532 (775)
.+.++.||+||+.. .||||+||
T Consensus 171 -----------------------------------------------------~~~~~~~s~~g~~~-----~~~~l~Ap 192 (267)
T cd07476 171 -----------------------------------------------------DGLPLKFSNWGADY-----RKKGILAP 192 (267)
T ss_pred -----------------------------------------------------CCCeeeecCCCCCC-----CCceEEec
Confidence 12456899999854 38899999
Q ss_pred CCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC----CCHHHHHHHHHhcccccCCC
Q 004077 533 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD----WSSAAIRSALMTTAWMKNNK 604 (775)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----~s~~~ik~~L~~TA~~~~~~ 604 (775)
|.+|+++.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 193 G~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 193 GENILGAALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred CCCceeecCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 9999999876 68999999999999999999999999887 89999999999999998643
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-45 Score=389.95 Aligned_cols=290 Identities=37% Similarity=0.504 Sum_probs=217.6
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCC-C-CCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPL-N-ATEDDRSPR 217 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~-~-~~~~~~~~~ 217 (775)
|+||+|||||+|||++||+|.+.. ..+.++...++|........... . .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997532 12334445555543211110000 0 000112245
Q ss_pred CCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceE
Q 004077 218 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 297 (775)
Q Consensus 218 D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdV 297 (775)
|..+|||||||+|+|+..+ ...+.||||+|+|+.+|++... + .+...+++++|+|+++++++|
T Consensus 60 ~~~~HGT~vAgiiag~~~n---------~~~~~Giap~a~i~~~~~~~~~--~------~~~~~~~~~ai~~a~~~~~~I 122 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN---------VGTIKGVAPKADLYAYKVLGPG--G------SGTTDVIIAAIEQAVDDGMDV 122 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc---------cCceEeECCCCeEEEEEeecCC--C------CCCHHHHHHHHHHHHHcCCCE
Confidence 6889999999999987432 3346799999999999999854 3 478899999999999999999
Q ss_pred EEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC--CCCCCceEEecccccccccccceEeCCCcEEe
Q 004077 298 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 375 (775)
Q Consensus 298 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~ 375 (775)
||||||... ....+.+..+++++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 123 in~S~g~~~--~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------- 186 (295)
T cd07474 123 INLSLGSSV--NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------- 186 (295)
T ss_pred EEeCCCCCC--CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------
Confidence 999999832 22457788888999999999999999998765544 335689999998541100
Q ss_pred eeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC
Q 004077 376 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 376 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCC-CCCCCCCCCCCceeeCCC
Q 004077 456 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRG-PNALDPYILKPDITAPGL 534 (775)
Q Consensus 456 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G-P~~~~d~~~KPDI~APG~ 534 (775)
........|+++| ++. +..+||||+|||+
T Consensus 187 ------------------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~ 216 (295)
T cd07474 187 ------------------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGV 216 (295)
T ss_pred ------------------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcC
Confidence 0012334455554 544 5889999999999
Q ss_pred cEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCC
Q 004077 535 NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGS 614 (775)
Q Consensus 535 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 614 (775)
+|++++... ...|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. .
T Consensus 217 ~i~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~ 278 (295)
T cd07474 217 DIMSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------V 278 (295)
T ss_pred ceEeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------C
Confidence 999998763 1578999999999999999999999999999999999999999998765421 2
Q ss_pred CCCCCccceeccCcccc
Q 004077 615 IATPFSFGSGHFRPTKA 631 (775)
Q Consensus 615 ~~~~~~~G~G~vn~~~A 631 (775)
.+++..+|+|+||+.+|
T Consensus 279 ~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 279 VYPVSRQGAGRVDALRA 295 (295)
T ss_pred cCChhccCcceeccccC
Confidence 23567899999999887
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=3.4e-45 Score=389.80 Aligned_cols=262 Identities=24% Similarity=0.342 Sum_probs=188.6
Q ss_pred CceEEEEeecCCCCCCCCCCCCCCCCCCCCccceee--------cCCccCcccccceeeeeeecccccccc----cCCCC
Q 004077 141 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQ--------TGVAFNSSLCNKKIIGARYYLKGFEQL----YGPLN 208 (775)
Q Consensus 141 ~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~--------~g~~~~~~~~n~kiig~~~~~~~~~~~----~~~~~ 208 (775)
|+|+|||||||||++||+|++. .|....+ .+.+|- .-+++++|...+... ..+.+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~------dd~~g~~f~~~~~~~~~~~~~~~~ 67 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYI------DDVNGWNFLGQYDPRRIVGDDPYD 67 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCcc------ccccCeeccCCcccccccccCccc
Confidence 6899999999999999999864 2322111 111110 012344443321100 00000
Q ss_pred ------CCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHH
Q 004077 209 ------ATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 282 (775)
Q Consensus 209 ------~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~ 282 (775)
...+...+.+..||||||||||+|...+ ...+.||||+|+|+.+|++... .....+
T Consensus 68 ~~~~~~g~~~~~~~~~~~gHGT~VAGiIaa~~~n---------~~g~~GvAp~a~i~~~k~~~~g---------~~~~~~ 129 (291)
T cd07483 68 LTEKGYGNNDVNGPISDADHGTHVAGIIAAVRDN---------GIGIDGVADNVKIMPLRIVPNG---------DERDKD 129 (291)
T ss_pred cccccccccccCCCCCCCCcHHHHHHHHhCcCCC---------CCceEEECCCCEEEEEEEecCC---------CcCHHH
Confidence 0112234557899999999999987432 1236799999999999998643 356788
Q ss_pred HHHHHHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC-----------CCCCCceE
Q 004077 283 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-----------SNLAPWLI 351 (775)
Q Consensus 283 i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-----------~~~~p~vi 351 (775)
+++||+||++.|++|||||||... ......+..++..+.++|+++|+||||+|.+.... ....+++|
T Consensus 130 i~~Ai~~a~~~g~~IiN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi 207 (291)
T cd07483 130 IANAIRYAVDNGAKVINMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFI 207 (291)
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCee
Confidence 999999999999999999999721 12234567777889999999999999998542211 11235677
Q ss_pred EecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCc
Q 004077 352 TVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG 431 (775)
Q Consensus 352 tVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~ 431 (775)
+|||++...
T Consensus 208 ~Vga~~~~~----------------------------------------------------------------------- 216 (291)
T cd07483 208 TVGASSKKY----------------------------------------------------------------------- 216 (291)
T ss_pred EEeeccccC-----------------------------------------------------------------------
Confidence 777643211
Q ss_pred chhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCcccc
Q 004077 432 FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMAN 511 (775)
Q Consensus 432 ~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 511 (775)
....++.
T Consensus 217 -------------------------------------------------------------------------~~~~~~~ 223 (291)
T cd07483 217 -------------------------------------------------------------------------ENNLVAN 223 (291)
T ss_pred -------------------------------------------------------------------------Ccccccc
Confidence 0125778
Q ss_pred ccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHH
Q 004077 512 FTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIR 591 (775)
Q Consensus 512 fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik 591 (775)
||++|+. +|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|.|+++|||
T Consensus 224 ~Sn~G~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~ 283 (291)
T cd07483 224 FSNYGKK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVK 283 (291)
T ss_pred cCCCCCC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 9999974 34999999999999876 689999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 004077 592 SALMTTAW 599 (775)
Q Consensus 592 ~~L~~TA~ 599 (775)
++|++||.
T Consensus 284 ~~L~~ta~ 291 (291)
T cd07483 284 QIILESGV 291 (291)
T ss_pred HHHHHhCC
Confidence 99999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-45 Score=379.03 Aligned_cols=238 Identities=27% Similarity=0.316 Sum_probs=191.8
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCc
Q 004077 143 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 222 (775)
Q Consensus 143 V~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 222 (775)
|+|||||||||++||+|++.. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 689999999999999996431 11111111 134567899
Q ss_pred cccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEcc
Q 004077 223 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 302 (775)
Q Consensus 223 GTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 302 (775)
||||||||+|+... . .||||+|+|+.+|++.....+ ..++..++++||+||++.|++||||||
T Consensus 39 GT~vAgiia~~~~~---------~---~Gvap~a~i~~~~v~~~~~~~-----~~~~~~~i~~ai~~a~~~g~~VIn~S~ 101 (239)
T cd05561 39 GTAVASLLAGAGAQ---------R---PGLLPGADLYGADVFGRAGGG-----EGASALALARALDWLAEQGVRVVNISL 101 (239)
T ss_pred HHHHHHHHhCCCCC---------C---cccCCCCEEEEEEEecCCCCC-----CCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 99999999987321 1 599999999999999864211 136788999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccccccccceEeCCCcEEeeeeecc
Q 004077 303 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 381 (775)
Q Consensus 303 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 381 (775)
|.. ....+..+++++.++|++||+||||+|+.. ..++...+++|+|++++.
T Consensus 102 g~~-----~~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~----------------------- 153 (239)
T cd05561 102 AGP-----PNALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA----------------------- 153 (239)
T ss_pred CCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC-----------------------
Confidence 972 235677788899999999999999999653 344555688999997542
Q ss_pred CCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc
Q 004077 382 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 461 (775)
Q Consensus 382 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 461 (775)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEccc
Q 004077 462 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 541 (775)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~ 541 (775)
.+.++.||++|+.. ||+|||.+|+++.+
T Consensus 154 --------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~ 181 (239)
T cd05561 154 --------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAP 181 (239)
T ss_pred --------------------------------------------CCCccccCCCCCcc--------eEEccccceecccC
Confidence 23567899999976 99999999999876
Q ss_pred CCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCcc
Q 004077 542 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSF 621 (775)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 621 (775)
. +.|..++|||||||||||++|||+|++| +++++||++|++||+++... ..+..|
T Consensus 182 ~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-----------~~d~~~ 236 (239)
T cd05561 182 G-------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP-----------GRDPVF 236 (239)
T ss_pred C-------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-----------CcCCCc
Confidence 5 6899999999999999999999999999 99999999999999977543 356778
Q ss_pred cee
Q 004077 622 GSG 624 (775)
Q Consensus 622 G~G 624 (775)
|||
T Consensus 237 G~G 239 (239)
T cd05561 237 GYG 239 (239)
T ss_pred CCC
Confidence 987
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2.1e-44 Score=391.03 Aligned_cols=223 Identities=26% Similarity=0.274 Sum_probs=167.0
Q ss_pred CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCce
Q 004077 217 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 296 (775)
Q Consensus 217 ~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvd 296 (775)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|+++... + ..+....+++||++|++.|++
T Consensus 182 ~d~~gHGThVAGIIAg~~~~---------~~~~~GVAP~A~I~svkv~d~~~-g-----s~~t~~~l~~ai~~ai~~gad 246 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE---------EPERNGVAPGAQIVSIKIGDTRL-G-----SMETGTALVRAMIAAIETKCD 246 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC---------CCceEEecCCCeEEEEEeccCCC-C-----CccchHHHHHHHHHHHHcCCC
Confidence 46789999999999998322 23467999999999999986542 2 013446799999999999999
Q ss_pred EEEEccCCCCCCCCCccHHHHHHHH-HHcCCcEEEEecCCCCCCCCCCCCC---CCceEEecccccccccccceEeCCCc
Q 004077 297 VLSISIGTNQPFAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDFVGPVVLGTGM 372 (775)
Q Consensus 297 VIn~SlG~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgAs~~~~~~~~~~~~~~~~ 372 (775)
|||||||....... ...+..++.+ +.++|++||+||||+|+...++..+ .+++|+|||+.....+.....+
T Consensus 247 VIN~SlG~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~---- 321 (412)
T cd04857 247 LINMSYGEATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL---- 321 (412)
T ss_pred EEEecCCcCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc----
Confidence 99999998432111 1233334443 4578999999999999887766543 5799999996432211000000
Q ss_pred EEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEec
Q 004077 373 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 452 (775)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n 452 (775)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeC
Q 004077 453 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 532 (775)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~AP 532 (775)
.....+.++.||||||+. |+.+||||+||
T Consensus 322 -------------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~AP 350 (412)
T cd04857 322 -------------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAP 350 (412)
T ss_pred -------------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeC
Confidence 001135788999999998 79999999999
Q ss_pred CCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccc
Q 004077 533 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMK 601 (775)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~ 601 (775)
|+.|.+.-... ...|..|+|||||||||||++|||++ .+|.|+|.+||++|++||+++
T Consensus 351 G~~I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 351 GGAIASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCcEEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 99998852211 15789999999999999999999985 478999999999999999863
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-44 Score=379.48 Aligned_cols=247 Identities=29% Similarity=0.345 Sum_probs=196.3
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
||+||||||||+++||+|.... ..++.++.+.++|.++.. ....|..|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC------------CCCCCCCC
Confidence 7999999999999999994221 012346677777765411 11367889
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||||+|+. .+.+.||||+|+|+.+|+.....+. ......++.|++|+.+.+++|||||
T Consensus 49 HGT~vagiia~~~-----------~~~~~GvAp~a~l~~~~~~~~~~~~------~~~~~~~~~ai~~a~~~~v~VIn~S 111 (261)
T cd07493 49 HGTAVLSTMAGYT-----------PGVMVGTAPNASYYLARTEDVASET------PVEEDNWVAAAEWADSLGVDIISSS 111 (261)
T ss_pred chhhhheeeeeCC-----------CCCEEEeCCCCEEEEEEecccCCcc------cccHHHHHHHHHHHHHcCCCEEEeC
Confidence 9999999999873 1336899999999999987644222 2456778999999999999999999
Q ss_pred cCCCCCCCC-----------CccHHHHHHHHHHcCCcEEEEecCCCCCCC---CCCCCCCCceEEecccccccccccceE
Q 004077 302 IGTNQPFAF-----------NRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSNLAPWLITVGAGSLDRDFVGPVV 367 (775)
Q Consensus 302 lG~~~~~~~-----------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~~p~vitVgAs~~~~~~~~~~~ 367 (775)
||....... ....+..+++.+.++|++||+||||+|... ...+...+++|+|||.+.
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~--------- 182 (261)
T cd07493 112 LGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA--------- 182 (261)
T ss_pred CCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc---------
Confidence 998432111 123577788889999999999999999763 334445689999998532
Q ss_pred eCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceE
Q 004077 368 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 447 (775)
Q Consensus 368 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g 447 (775)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCC
Q 004077 448 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 527 (775)
Q Consensus 448 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KP 527 (775)
.+.++.||++||+. ++++||
T Consensus 183 ----------------------------------------------------------~~~~~~~S~~G~~~--~~~~~p 202 (261)
T cd07493 183 ----------------------------------------------------------NGNKASFSSIGPTA--DGRLKP 202 (261)
T ss_pred ----------------------------------------------------------CCCCCccCCcCCCC--CCCcCC
Confidence 23677899999987 689999
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
||+|||.+|++.... +.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 203 di~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 203 DVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999985544 67899999999999999999999999999999999999999985
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=4.1e-44 Score=377.19 Aligned_cols=247 Identities=30% Similarity=0.365 Sum_probs=193.0
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 219 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 219 (775)
|+||+|||||+|||++||+|.+. |.+... ..+...+.+.+ +......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~-----------~~~~~~~~~~d----------~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG-----------GSADHDYNWFD----------PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC-----------CCccccccccc----------CCCCCCCCCCC
Confidence 89999999999999999999754 111000 00000000111 01112356688
Q ss_pred CCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh-------
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR------- 292 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~------- 292 (775)
.+|||||||||+|.... +...||||+|+|+.+|++... + +...+++++++++++
T Consensus 52 ~~HGT~vagii~g~~~~----------~~~~GvAp~a~i~~~~~~~~~--~-------~~~~~~~~a~~~~~~~~~~~~~ 112 (264)
T cd07481 52 NGHGTHTMGTMVGNDGD----------GQQIGVAPGARWIACRALDRN--G-------GNDADYLRCAQWMLAPTDSAGN 112 (264)
T ss_pred CCchhhhhhheeecCCC----------CCceEECCCCeEEEEEeecCC--C-------CcHHHHHHHHHHHHhccccccc
Confidence 99999999999987321 123799999999999999865 3 678899999999975
Q ss_pred -----CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC---CCCCCCceEEeccccccccccc
Q 004077 293 -----DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVG 364 (775)
Q Consensus 293 -----~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgAs~~~~~~~~ 364 (775)
.+++|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+||+++.
T Consensus 113 ~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 113 PADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 789999999998322 24556667778889999999999999865433 3345689999998542
Q ss_pred ceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcC
Q 004077 365 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 444 (775)
Q Consensus 365 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 444 (775)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 524 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~ 524 (775)
.+.++.||++||.. .++
T Consensus 184 -------------------------------------------------------------~~~~~~~S~~g~~~--~~~ 200 (264)
T cd07481 184 -------------------------------------------------------------NDVLADFSSRGPST--YGR 200 (264)
T ss_pred -------------------------------------------------------------CCCCccccCCCCCC--CCC
Confidence 23677999999987 489
Q ss_pred CCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 004077 525 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD--WSSAAIRSALMTTAW 599 (775)
Q Consensus 525 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--~s~~~ik~~L~~TA~ 599 (775)
+||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|. ++++|||++|++||+
T Consensus 201 ~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 201 IKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred cCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999877 68899999999999999999999999999 999999999999985
No 16
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-44 Score=370.30 Aligned_cols=337 Identities=23% Similarity=0.337 Sum_probs=250.2
Q ss_pred ccCCceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchh------hhc------------ceEEeec---eeEeEEEE
Q 004077 20 QKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEE------ARA------------SHLYSYK---HSINGFSA 78 (775)
Q Consensus 20 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~------------~i~~~y~---~~~ng~~~ 78 (775)
.....+|||.|++.. ..+....|.++++..++.... .-. .+.+.|. .+|+|+.-
T Consensus 77 ~~~~~~YiV~f~~~~-----~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~ 151 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDA-----SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTG 151 (501)
T ss_pred cccccceEEEeCCCc-----cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccc
Confidence 455689999999665 345566788888777653221 000 1333333 26777788
Q ss_pred EcCHHHHHhhcc--ccceEEecCCCcccccc-----cCCccccccchhhhcccCcc-cccccccccCCCCCceEEEEeec
Q 004077 79 VLTPDEAARLSE--EVVSVYPSHPEKYSLQT-----TRSWEFVGLDEVAKQNWNHF-NMGQDLLSKARYGQDVIVGLVDN 150 (775)
Q Consensus 79 ~l~~~~~~~L~~--~V~~V~~~~~~~~~~~~-----~~s~~~~gl~~~~~~~~~~~-~~~~~~~~~~~~G~GV~VgVIDt 150 (775)
..+.+-+..+++ -++.++++. ...... .+....|||.++.++....+ .....+++ -..|+||...|+||
T Consensus 152 ~ft~~~v~~i~~~p~~~~ve~~~--~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~DT 228 (501)
T KOG1153|consen 152 YFTGESVCSIRSDPLIKAVEKDS--VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLDT 228 (501)
T ss_pred ccccceeeeeccCcceeeccccc--ccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEecc
Confidence 888887777777 666777666 433221 22223457776643321100 01112332 44899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhh
Q 004077 151 GVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTV 230 (775)
Q Consensus 151 Gid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGii 230 (775)
||+.+||+|.++. .| |..+ . ......|++||||||||+|
T Consensus 229 GVni~H~dFegRa------~w------Ga~i---------------~--------------~~~~~~D~nGHGTH~AG~I 267 (501)
T KOG1153|consen 229 GVNIEHPDFEGRA------IW------GATI---------------P--------------PKDGDEDCNGHGTHVAGLI 267 (501)
T ss_pred cccccccccccce------ec------cccc---------------C--------------CCCcccccCCCcceeeeee
Confidence 9999999998652 33 2111 0 0124568999999999999
Q ss_pred cccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---------CceEEEEc
Q 004077 231 AGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---------GVHVLSIS 301 (775)
Q Consensus 231 aG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---------gvdVIn~S 301 (775)
+++. -|||.+++|+++||++++ | ++..+++++++|++++. +..|.|||
T Consensus 268 ~sKt---------------~GvAK~s~lvaVKVl~~d--G------sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlS 324 (501)
T KOG1153|consen 268 GSKT---------------FGVAKNSNLVAVKVLRSD--G------SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLS 324 (501)
T ss_pred eccc---------------cccccccceEEEEEeccC--C------cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEe
Confidence 9982 399999999999999998 6 67999999999999985 57899999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC-CCCCceEEecccccccccccceEeCCCcEEeeeeec
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 380 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 380 (775)
+|+ +..-.+..|++.|.+.||.+++||||+..+.+..+ ..+..+|||||++.
T Consensus 325 lGg-----~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------------- 377 (501)
T KOG1153|consen 325 LGG-----FRSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------------- 377 (501)
T ss_pred cCC-----cccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------------
Confidence 999 34466888999999999999999999998765544 46689999999753
Q ss_pred cCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc
Q 004077 381 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 460 (775)
Q Consensus 381 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 460 (775)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcc
Q 004077 461 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 540 (775)
Q Consensus 461 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~ 540 (775)
.+.+|.||+||+++ ||.|||++|+|+|
T Consensus 378 ---------------------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~ 404 (501)
T KOG1153|consen 378 ---------------------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSW 404 (501)
T ss_pred ---------------------------------------------ccchhhhcCcccee--------eeecCchhhhhhh
Confidence 24889999999999 9999999999999
Q ss_pred cCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 004077 541 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD---------WSSAAIRSALMTTAW 599 (775)
Q Consensus 541 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------~s~~~ik~~L~~TA~ 599 (775)
.+.. ..-.+.||||||+|||||++|.++.++|. .+|.++|..+..=..
T Consensus 405 iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 405 IGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 8843 46779999999999999999999999883 378888887766554
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-43 Score=370.93 Aligned_cols=258 Identities=30% Similarity=0.437 Sum_probs=203.3
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 219 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 219 (775)
|+||+|+|||+||+++||+|.+... ..+.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~---------------------------~~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII---------------------------RFADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc---------------------------ccccccccc----------cCCCCCCCC
Confidence 8999999999999999999975421 001111000 012356677
Q ss_pred CCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC----Cc
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GV 295 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~----gv 295 (775)
.+|||||||||+|+..+. ...+.||||+|+|+.+|+++.. + ....+++++||+|+++. ++
T Consensus 44 ~~HGT~vAgiiag~~~~~--------~~~~~Giap~a~i~~~~v~~~~--~------~~~~~~~~~ai~~~~~~~~~~~~ 107 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS--------NGKYKGVAPGANLVGVKVLDDS--G------SGSESDIIAGIDWVVENNEKYNI 107 (264)
T ss_pred CCchHHHHHHHhcCCccc--------CCceEEECCCCeEEEEEeecCC--C------CccHHHHHHHHHHHHhhccccCc
Confidence 899999999999984321 2346899999999999999876 3 46788999999999998 99
Q ss_pred eEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccccccccccceEeCCCcE
Q 004077 296 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS--SLSNLAPWLITVGAGSLDRDFVGPVVLGTGME 373 (775)
Q Consensus 296 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~ 373 (775)
+|||||||.........+.+..+++++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 108 ~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 108 RVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred eEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 9999999985443556788888999999999999999999997765 33445689999998653220
Q ss_pred EeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecC
Q 004077 374 IIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS 453 (775)
Q Consensus 374 ~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~ 453 (775)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCC
Q 004077 454 PANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG 533 (775)
Q Consensus 454 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG 533 (775)
....++.||++||+. ++++||||+|||
T Consensus 176 ---------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG 202 (264)
T cd07487 176 ---------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPG 202 (264)
T ss_pred ---------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccc
Confidence 012578899999998 599999999999
Q ss_pred CcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 534 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 534 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
.+|+++.+..... .....+.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 203 ~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 203 ENIVSCRSPGGNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cceEecccccccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999986542110 1112267899999999999999999999999999999999999999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=4.5e-43 Score=371.19 Aligned_cols=264 Identities=27% Similarity=0.308 Sum_probs=198.6
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+.... ..+ ......+.+... ...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~------~~~~~~~~~~~~---------~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGY------DPAVNGYNFVPN---------VGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCc------ccccCCcccccc---------cCC
Confidence 3799999999999999999999999999865110 000 000000000000 001
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
......|..||||||||||+|+..+... .++.. .+.|+||+|+|+.+|++... + .+..+.++++|++++
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~-~g~i~--~~~gvap~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 121 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGG-VGGIA--GAGGVAPGVKIMSIQIFAGR--Y------YVGDDAVAAAIVYAA 121 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcc-eeccc--cccccCCCCEEEEEEEECCC--C------CccHHHHHHHHHHHH
Confidence 1224557789999999999987432211 10111 23579999999999999875 3 478889999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcC-------CcEEEEecCCCCCCCCCCCCCCCceEEeccccccccccc
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-------NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVG 364 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~ 364 (775)
+.|++|||||||... ...+...+..+++.+.++ |++||+||||++......+...+++|+|++++.
T Consensus 122 ~~g~~Vin~S~g~~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 122 DNGAVILQNSWGGTG-GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred HcCCcEEEecCCCCC-ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999999999832 223445677777888887 999999999999876666666789999998542
Q ss_pred ceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcC
Q 004077 365 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 444 (775)
Q Consensus 365 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 444 (775)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 524 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~ 524 (775)
.+.++.||++|+..
T Consensus 195 -------------------------------------------------------------~~~~~~~S~~g~~~----- 208 (273)
T cd07485 195 -------------------------------------------------------------NDNKASFSNYGRWV----- 208 (273)
T ss_pred -------------------------------------------------------------CCCcCccccCCCce-----
Confidence 23667899999977
Q ss_pred CCCceeeCCC-cEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 004077 525 LKPDITAPGL-NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD-WSSAAIRSALMTT 597 (775)
Q Consensus 525 ~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-~s~~~ik~~L~~T 597 (775)
||+|||. .|+++.+.... .....|..++|||||||+|||++|||+|++|. ++++|||++|++|
T Consensus 209 ---~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 ---DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 99988765321 11257899999999999999999999999999 9999999999986
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.7e-42 Score=361.79 Aligned_cols=233 Identities=31% Similarity=0.423 Sum_probs=193.4
Q ss_pred ccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCC
Q 004077 133 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 212 (775)
Q Consensus 133 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 212 (775)
.|..+++|+||+|||||+||+++||+|.+. +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 777899999999999999999999999643 1122222221
Q ss_pred CCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004077 213 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 292 (775)
Q Consensus 213 ~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 292 (775)
....|..+|||||||||+|.. .||||+|+|+.+|+++.. + ....+.++++++++++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~---------------~GvAp~a~i~~~~i~~~~--~------~~~~~~~~~ai~~~~~ 112 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT---------------YGVAKKANLVAVKVLDCN--G------SGTLSGIIAGLEWVAN 112 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc---------------cCcCCCCeEEEEEEeCCC--C------CcCHHHHHHHHHHHHh
Confidence 125678899999999999862 499999999999999876 3 3678899999999998
Q ss_pred C-----CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccccccccccce
Q 004077 293 D-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPV 366 (775)
Q Consensus 293 ~-----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAs~~~~~~~~~~ 366 (775)
. +++|||||||... ...+..+++++.++|+++|+||||+|.... ..+...+++|+||+++.
T Consensus 113 ~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~-------- 179 (255)
T cd04077 113 DATKRGKPAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS-------- 179 (255)
T ss_pred cccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC--------
Confidence 7 4899999999832 456777888899999999999999997653 33455689999998542
Q ss_pred EeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCce
Q 004077 367 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 446 (775)
Q Consensus 367 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~ 446 (775)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCC
Q 004077 447 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 526 (775)
Q Consensus 447 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~K 526 (775)
.+.++.||++||..
T Consensus 180 -----------------------------------------------------------~~~~~~~S~~g~~~------- 193 (255)
T cd04077 180 -----------------------------------------------------------DDARASFSNYGSCV------- 193 (255)
T ss_pred -----------------------------------------------------------CCCccCcccCCCCC-------
Confidence 23567899999987
Q ss_pred CceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 004077 527 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWM 600 (775)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~ 600 (775)
||+|||.+|.++..... ..|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 194 -~i~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 194 -DIFAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -cEEeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999887411 689999999999999999999999999999999999999999974
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.2e-43 Score=372.25 Aligned_cols=268 Identities=24% Similarity=0.196 Sum_probs=187.1
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCcc
Q 004077 144 IVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHG 223 (775)
Q Consensus 144 ~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 223 (775)
+|||||||||.+||+|.+.- .....+... .....|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999996421 111111110 01156889999
Q ss_pred ccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCC---ceEEEE
Q 004077 224 THTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG---VHVLSI 300 (775)
Q Consensus 224 THVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~g---vdVIn~ 300 (775)
|||||||++.... .....|+||+|+|+.+|++..... .+.....+++++||+|+++.+ ++||||
T Consensus 42 T~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv~~~~g~----~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~ 108 (291)
T cd04847 42 TAVAGLALYGDLT---------LPGNGLPRPGCRLESVRVLPPNGE----NDPELYGDITLRAIRRAVIQNPDIVRVFNL 108 (291)
T ss_pred HHHHHHHHcCccc---------CCCCCCcccceEEEEEEEcCCCCC----CCccChHHHHHHHHHHHHHhCCCceeEEEE
Confidence 9999999875322 223469999999999999987620 011357788999999999853 599999
Q ss_pred ccCCCCCCCCC-ccHHHHHHHH-HHcCCcEEEEecCCCCCCCCCC------------CCCCCceEEecccccccccccce
Q 004077 301 SIGTNQPFAFN-RDGIAIGALN-AVKHNILVACSAGNSGPAPSSL------------SNLAPWLITVGAGSLDRDFVGPV 366 (775)
Q Consensus 301 SlG~~~~~~~~-~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~~p~vitVgAs~~~~~~~~~~ 366 (775)
|||........ ...+..++++ +.++|++||+||||++...... +...+++|+|||++.+.......
T Consensus 109 SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 109 SLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred ecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 99995332211 1245555554 5689999999999999775432 23357999999976543211000
Q ss_pred EeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCce
Q 004077 367 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 446 (775)
Q Consensus 367 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~ 446 (775)
..
T Consensus 189 ~~------------------------------------------------------------------------------ 190 (291)
T cd04847 189 RY------------------------------------------------------------------------------ 190 (291)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCC
Q 004077 447 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 526 (775)
Q Consensus 447 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~K 526 (775)
+.......+.||+|||.. ++.+|
T Consensus 191 -------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 -------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred -------------------------------------------------------cccccccCCCccccCCCC--CCCcC
Confidence 000011233499999998 69999
Q ss_pred CceeeCCCcEEEcccCCCCCC-----cccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 527 PDITAPGLNILAAWSEASSPS-----KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
|||+|||++|.+..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999988654211000 0001112368999999999999999999999999999999999999999984
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=5.6e-42 Score=360.56 Aligned_cols=240 Identities=30% Similarity=0.371 Sum_probs=200.0
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+ +|+||+|||||+||+++||+|... ++...+++.+.
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC------------
Confidence 788888 999999999999999999998422 22222333221
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..+|||||||||++...+ ...+.|+||+|+|+.+|+++.. + .+...+++++|++++
T Consensus 61 -~~~~~d~~~HGT~vagii~~~~~~---------~~~~~Giap~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 122 (260)
T cd07484 61 -DSDAMDDNGHGTHVAGIIAAATNN---------GTGVAGVAPKAKIMPVKVLDAN--G------SGSLADIANGIRYAA 122 (260)
T ss_pred -CCCCCCCCCcHHHHHHHHhCccCC---------CCceEeECCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHH
Confidence 123567889999999999987322 2235799999999999999875 3 467889999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
+.+++|||||||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.
T Consensus 123 ~~~~~iin~S~g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------- 185 (260)
T cd07484 123 DKGAKVINLSLGGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------- 185 (260)
T ss_pred HCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------
Confidence 999999999999832 445677777888999999999999999887777778899999998542
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+..+.||++|+.. |++|
T Consensus 186 ------------------------------------------------------~~~~~~~s~~g~~~--------~~~a 203 (260)
T cd07484 186 ------------------------------------------------------DDKRASFSNYGKWV--------DVSA 203 (260)
T ss_pred ------------------------------------------------------CCCcCCcCCCCCCc--------eEEe
Confidence 23567899999876 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMK 601 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~ 601 (775)
||.+|+++.+. +.|..++|||||||+|||++||++|++| +++++||++|++||+++
T Consensus 204 pG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 204 PGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999998776 6899999999999999999999999999 99999999999999865
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.5e-42 Score=358.02 Aligned_cols=253 Identities=29% Similarity=0.325 Sum_probs=186.7
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
||+|||||+|||++||+|.+.- ...+.|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------------~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------------AQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------------CCceeccCCC---------CCCCCCCCCCCC
Confidence 7999999999999999996431 1112222110 011224557789
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||||+|+.. ++...||||+|+|+.+|++... + +..++++++|+|+++.+++|||||
T Consensus 45 HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v~~~~--~-------~~~~~~~~ai~~a~~~~~~Vin~S 105 (254)
T cd07490 45 HGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKVLDDG--G-------GSLSQIIAGMEWAVEKDADVVSMS 105 (254)
T ss_pred cHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEEecCC--C-------CcHHHHHHHHHHHHhCCCCEEEEC
Confidence 99999999999742 2335799999999999999865 3 678999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHc-CCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCcEEeeeeec
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 380 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 380 (775)
||..... .+++..+++.+.+ +|++||+||||+|......+...+++|+|||++.+.........
T Consensus 106 ~g~~~~~---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------ 170 (254)
T cd07490 106 LGGTYYS---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------ 170 (254)
T ss_pred CCcCCCC---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------
Confidence 9983221 5566666665554 69999999999998766666667999999997643211000000
Q ss_pred cCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc
Q 004077 381 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 460 (775)
Q Consensus 381 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 460 (775)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcc
Q 004077 461 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 540 (775)
Q Consensus 461 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~ 540 (775)
.......++++|... +...||||+|||.+|+++.
T Consensus 171 ---------------------------------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~ 204 (254)
T cd07490 171 ---------------------------------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSAR 204 (254)
T ss_pred ---------------------------------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccc
Confidence 001222233344332 4678999999999999965
Q ss_pred cCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 541 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 541 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
.... ..+.|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 205 ~~~~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 205 QGAN---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred cCCC---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 3211 1268999999999999999999999999999999999999999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.9e-42 Score=363.54 Aligned_cols=207 Identities=26% Similarity=0.323 Sum_probs=165.4
Q ss_pred CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH---
Q 004077 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 291 (775)
Q Consensus 215 ~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~--- 291 (775)
...+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. + ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~---------~~~~~GvAp~a~i~~~~v~~~~--~-------~~~~~i~~a~~~a~~~~ 127 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN---------GVGVAGVAWGARILPVRVLGKC--G-------GTLSDIVDGMRWAAGLP 127 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC---------CCCceeecCCCeEEEEEEecCC--C-------CcHHHHHHHHHHHhccC
Confidence 3456789999999999997432 2235799999999999999876 4 57889999999998
Q ss_pred -------hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccccccc
Q 004077 292 -------RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFV 363 (775)
Q Consensus 292 -------~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAs~~~~~~~ 363 (775)
.++++|||||||.... ....+..++..+.++|++||+||||++... ...+...+++|+|||++.
T Consensus 128 ~~~~~~~~~~~~Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----- 199 (285)
T cd07496 128 VPGVPVNPNPAKVINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL----- 199 (285)
T ss_pred cCCCcccCCCCeEEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-----
Confidence 4578999999998321 145677888899999999999999999765 344556689999998542
Q ss_pred cceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhc
Q 004077 364 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRA 443 (775)
Q Consensus 364 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~ 443 (775)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCC
Q 004077 444 GGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPY 523 (775)
Q Consensus 444 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~ 523 (775)
.+.++.||++||..
T Consensus 200 --------------------------------------------------------------~~~~~~~S~~g~~v---- 213 (285)
T cd07496 200 --------------------------------------------------------------RGQRASYSNYGPAV---- 213 (285)
T ss_pred --------------------------------------------------------------CCCcccccCCCCCC----
Confidence 23678899999987
Q ss_pred CCCCceeeCCCcEEEcccCCCCCC--cccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004077 524 ILKPDITAPGLNILAAWSEASSPS--KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597 (775)
Q Consensus 524 ~~KPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 597 (775)
||+|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 214 ----di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 214 ----DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ----CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999998876532110 00011123578999999999999999999999999999999999999876
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-41 Score=361.46 Aligned_cols=251 Identities=25% Similarity=0.294 Sum_probs=181.6
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|+++++|+||+||||||||+..|| |...++ .+.. .+..+
T Consensus 12 ~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~~-------------------~~~~~------------ 52 (298)
T cd07494 12 RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVRV-------------------VLAPG------------ 52 (298)
T ss_pred HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------ccee-------------------ecCCC------------
Confidence 89999999999999999999999888 754321 1100 00000
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||+
T Consensus 53 ~~~~~~D~~gHGT~vag~i-------------------~GvAP~a~i~~vkv~~~------------~~~~~~~ai~~a~ 101 (298)
T cd07494 53 ATDPACDENGHGTGESANL-------------------FAIAPGAQFIGVKLGGP------------DLVNSVGAFKKAI 101 (298)
T ss_pred CCCCCCCCCCcchheeece-------------------eEeCCCCeEEEEEccCC------------CcHHHHHHHHHHH
Confidence 1123567889999999875 39999999999999753 3467899999999
Q ss_pred hCCceEEEEccCCCCCCC---------CCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEeccccccccc
Q 004077 292 RDGVHVLSISIGTNQPFA---------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDF 362 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~---------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~ 362 (775)
+++++|||||||...... .....+..++++|.++|++||+||||++. .++...|++|+|||++.+..-
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g 178 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG 178 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC
Confidence 999999999999842211 11335777888899999999999999974 456677999999997532200
Q ss_pred ccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhh
Q 004077 363 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 442 (775)
Q Consensus 363 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~ 442 (775)
..
T Consensus 179 ---------~~--------------------------------------------------------------------- 180 (298)
T cd07494 179 ---------AR--------------------------------------------------------------------- 180 (298)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004077 443 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 522 (775)
Q Consensus 443 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d 522 (775)
......+.|+|. . .+
T Consensus 181 -------------------------------------------------------------~~~~~~~~~~s~---~-~~ 195 (298)
T cd07494 181 -------------------------------------------------------------RASSYASGFRSK---I-YP 195 (298)
T ss_pred -------------------------------------------------------------cccccccCcccc---c-CC
Confidence 000001112221 1 24
Q ss_pred CCCCCce----------------eeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCC
Q 004077 523 YILKPDI----------------TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 586 (775)
Q Consensus 523 ~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 586 (775)
++.|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|+
T Consensus 196 g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~ 270 (298)
T cd07494 196 GRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLS 270 (298)
T ss_pred CCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCC
Confidence 6777877 4799999766532100 001126799999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCC
Q 004077 587 SAAIRSALMTTAWMKNN 603 (775)
Q Consensus 587 ~~~ik~~L~~TA~~~~~ 603 (775)
+++||.+|++||+++..
T Consensus 271 ~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 271 PERARSLLNKTARDVTK 287 (298)
T ss_pred HHHHHHHHHHhCcccCC
Confidence 99999999999997753
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-41 Score=352.75 Aligned_cols=241 Identities=28% Similarity=0.330 Sum_probs=189.4
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCc
Q 004077 143 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 222 (775)
Q Consensus 143 V~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 222 (775)
|+|||||+|||++||+|++.. +++..+.+.. +...+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~-------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS-------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC-------------CCCCCCCCCCC
Confidence 689999999999999997520 1111111111 11135678999
Q ss_pred cccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEcc
Q 004077 223 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 302 (775)
Q Consensus 223 GTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 302 (775)
||||||||+|+..+ ...+.||||+|+|+.+|++... + .+...++.++++|+++.+++||||||
T Consensus 43 GT~vAgiiag~~~~---------~~~~~Gvap~a~i~~~~~~~~~--~------~~~~~~~~~ai~~a~~~~~~Vin~S~ 105 (242)
T cd07498 43 GTACAGVAAAVGNN---------GLGVAGVAPGAKLMPVRIADSL--G------YAYWSDIAQAITWAADNGADVISNSW 105 (242)
T ss_pred HHHHHHHHHhccCC---------CceeEeECCCCEEEEEEEECCC--C------CccHHHHHHHHHHHHHCCCeEEEecc
Confidence 99999999997422 2335799999999999999865 2 36889999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHc-CCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCcEEeeeeecc
Q 004077 303 GTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 381 (775)
Q Consensus 303 G~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 381 (775)
|...........+..++..+.+ +|+++|+||||+|......+...+++|+|||++.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------- 162 (242)
T cd07498 106 GGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------- 162 (242)
T ss_pred CCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------
Confidence 9844333445677777788888 9999999999999776666667799999998542
Q ss_pred CCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc
Q 004077 382 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 461 (775)
Q Consensus 382 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 461 (775)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEccc
Q 004077 462 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 541 (775)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~ 541 (775)
.+.++.||+|||.. |++|||.++.+...
T Consensus 163 --------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~ 190 (242)
T cd07498 163 --------------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGT 190 (242)
T ss_pred --------------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCc
Confidence 23567899999987 99999999988854
Q ss_pred CCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004077 542 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597 (775)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 597 (775)
..... .....+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 191 ~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 191 GRGSA----GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ccccc----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 32110 11122678999999999999999999999999999999999999976
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.9e-41 Score=361.60 Aligned_cols=279 Identities=30% Similarity=0.344 Sum_probs=198.8
Q ss_pred cCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCC
Q 004077 136 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 215 (775)
Q Consensus 136 ~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 215 (775)
++++|+||+|||||||||++||+|.+... .+.. ...+++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 47899999999999999999999976421 0000 12233333222221 2
Q ss_pred CCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc
Q 004077 216 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 295 (775)
Q Consensus 216 ~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv 295 (775)
..|..+|||||||||+|+...... ...+.||||+|+|+.+|++..... .....++..+++++.+.++
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~------~~~~~GvAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 116 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS------ISLYKGVAPKAKLYFQDIGDTSGN-------LSSPPDLNKLFSPMYDAGA 116 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc------ccccccccccCeEEEEEeeccCcc-------ccCCccHHHHHHHHHHhCC
Confidence 227899999999999997533211 114579999999999999887521 2567778999999999999
Q ss_pred eEEEEccCCCCCCCCCccHHHHHHHHHH-c-CCcEEEEecCCCCCCCC---CCCCCCCceEEecccccccccccceEeCC
Q 004077 296 HVLSISIGTNQPFAFNRDGIAIGALNAV-K-HNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLGT 370 (775)
Q Consensus 296 dVIn~SlG~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~ 370 (775)
+|||||||..... .......+++++. + +|++||+||||+|.... ..+...+++|+|||++.+......
T Consensus 117 ~Vin~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----- 189 (293)
T cd04842 117 RISSNSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----- 189 (293)
T ss_pred EEEeccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----
Confidence 9999999994321 1233444444433 3 79999999999997654 445567999999997654311000
Q ss_pred CcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEE
Q 004077 371 GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLIL 450 (775)
Q Consensus 371 ~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~ 450 (775)
.|..
T Consensus 190 -------------------------------------~~~~--------------------------------------- 193 (293)
T cd04842 190 -------------------------------------GGLG--------------------------------------- 193 (293)
T ss_pred -------------------------------------cccc---------------------------------------
Confidence 0000
Q ss_pred ecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCcee
Q 004077 451 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDIT 530 (775)
Q Consensus 451 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~ 530 (775)
.......++.||++||+. ++++||||+
T Consensus 194 ---------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ 220 (293)
T cd04842 194 ---------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLV 220 (293)
T ss_pred ---------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEE
Confidence 001135789999999987 589999999
Q ss_pred eCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 004077 531 APGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-----P---DWSSAAIRSALMTTAW 599 (775)
Q Consensus 531 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~~s~~~ik~~L~~TA~ 599 (775)
|||++|+++...... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 221 ApG~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 221 APGTGILSARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCCeEeccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999999754200 011122678999999999999999999999985 4 6667799999999985
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-41 Score=360.25 Aligned_cols=266 Identities=26% Similarity=0.322 Sum_probs=184.2
Q ss_pred ccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCC
Q 004077 135 SKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDR 214 (775)
Q Consensus 135 ~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 214 (775)
..+++|+||+|||||+|||++||+|.+... ...+|... .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 347899999999999999999999975311 11122111 1
Q ss_pred CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCC
Q 004077 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG 294 (775)
Q Consensus 215 ~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~g 294 (775)
.+.|..||||||||||+|+..+ +...||||+|+|+.+|++.... ......+++||+||++.|
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~----------~~~~GvAp~a~i~~~~~~~~~~--------~~~~~~i~~ai~~a~~~g 102 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIGKVLGDG--------GGGDGGILAGIQWAVANG 102 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC----------CcccccCCCCEEEEEEEEeCCC--------CCcHHHHHHHHHHHHHcC
Confidence 2567899999999999987432 2346999999999999998652 356777999999999999
Q ss_pred ceEEEEccCCCCC--------C-CCCccHHHHHHHHH---------------HcCCcEEEEecCCCCCCCCCCCC-----
Q 004077 295 VHVLSISIGTNQP--------F-AFNRDGIAIGALNA---------------VKHNILVACSAGNSGPAPSSLSN----- 345 (775)
Q Consensus 295 vdVIn~SlG~~~~--------~-~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~----- 345 (775)
++|||||||.... . ......++...+.+ .++|++||+||||+|........
T Consensus 103 ~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~ 182 (297)
T cd07480 103 ADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPA 182 (297)
T ss_pred CCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcc
Confidence 9999999998331 0 11112233333333 68999999999999865332211
Q ss_pred CCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEE
Q 004077 346 LAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 425 (775)
Q Consensus 346 ~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 425 (775)
..++++.|++...
T Consensus 183 ~~~~~~~V~~V~~------------------------------------------------------------------- 195 (297)
T cd07480 183 ACPSAMGVAAVGA------------------------------------------------------------------- 195 (297)
T ss_pred ccccccEEEEECC-------------------------------------------------------------------
Confidence 1123333333211
Q ss_pred EecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCC
Q 004077 426 CMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQP 505 (775)
Q Consensus 426 ~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 505 (775)
T Consensus 196 -------------------------------------------------------------------------------- 195 (297)
T cd07480 196 -------------------------------------------------------------------------------- 195 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCC
Q 004077 506 APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW 585 (775)
Q Consensus 506 ~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~ 585 (775)
.+....|+++.+. ...||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+
T Consensus 196 ~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~ 258 (297)
T cd07480 196 LGRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKA 258 (297)
T ss_pred CCCCCCccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCccc
Confidence 0111223333321 34578999999999998876 789999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCcc
Q 004077 586 SSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPT 629 (775)
Q Consensus 586 s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 629 (775)
++.+++.+|+......... ..........+|+|++++.
T Consensus 259 ~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 259 GGRALAALLQARLTAARTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred CHHHHHHHHHHHHhhcccC------CCCCCCChhhcCCceeecC
Confidence 9888888887432221100 0012235677899999875
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.9e-41 Score=352.52 Aligned_cols=248 Identities=21% Similarity=0.155 Sum_probs=175.1
Q ss_pred cccccC-CCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCC
Q 004077 132 DLLSKA-RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 210 (775)
Q Consensus 132 ~~~~~~-~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 210 (775)
++|+.. ..|+||+|+|||+|||.+||+|.++... . ..
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~---------------------------~---~~------------ 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT---------------------------L---IS------------ 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc---------------------------c---cC------------
Confidence 788874 4599999999999999999999753110 0 00
Q ss_pred CCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH
Q 004077 211 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA 290 (775)
Q Consensus 211 ~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a 290 (775)
...+.|+.+|||||||||+|.. +.. .+.||||+|+|+.+|++. . ....+.|..|++|+
T Consensus 44 --~~~~~d~~gHGT~VAGiIaa~~---------n~~-G~~GvAp~a~l~~i~v~~-~---------~~~~~ai~~A~~~~ 101 (277)
T cd04843 44 --GLTDQADSDHGTAVLGIIVAKD---------NGI-GVTGIAHGAQAAVVSSTR-V---------SNTADAILDAADYL 101 (277)
T ss_pred --CCCCCCCCCCcchhheeeeeec---------CCC-ceeeeccCCEEEEEEecC-C---------CCHHHHHHHHHhcc
Confidence 0124578899999999999862 111 257999999999999975 1 12333444444443
Q ss_pred HhCCceEEEEccCCCCCCC-----CCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC-------------CCCCceEE
Q 004077 291 IRDGVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-------------NLAPWLIT 352 (775)
Q Consensus 291 ~~~gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~vit 352 (775)
...++.+||||||...... .....+..++.++.++|+++|+||||++....... ...|++|+
T Consensus 102 ~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~ 181 (277)
T cd04843 102 SPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIM 181 (277)
T ss_pred CCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEE
Confidence 3356788999999842211 12334556778888999999999999986522111 11256888
Q ss_pred ecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcc
Q 004077 353 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 432 (775)
Q Consensus 353 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 432 (775)
|||++.+.
T Consensus 182 VgA~~~~~------------------------------------------------------------------------ 189 (277)
T cd04843 182 VGAGSSTT------------------------------------------------------------------------ 189 (277)
T ss_pred EEeccCCC------------------------------------------------------------------------
Confidence 88754211
Q ss_pred hhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccc
Q 004077 433 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 512 (775)
Q Consensus 433 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 512 (775)
...++.|
T Consensus 190 -------------------------------------------------------------------------~~~~~~f 196 (277)
T cd04843 190 -------------------------------------------------------------------------GHTRLAF 196 (277)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 1137899
Q ss_pred cCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHH----h-CCCCCH
Q 004077 513 TSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----I-HPDWSS 587 (775)
Q Consensus 513 SS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~~s~ 587 (775)
|++||.. ||.|||++|+++....... ..+.....|..++|||||||||||++|||++ + +|+|++
T Consensus 197 Sn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~ 265 (277)
T cd04843 197 SNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTP 265 (277)
T ss_pred cCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 9999987 9999999999998753210 0011113457899999999999999999975 3 499999
Q ss_pred HHHHHHHHhccc
Q 004077 588 AAIRSALMTTAW 599 (775)
Q Consensus 588 ~~ik~~L~~TA~ 599 (775)
+|||++|++|+.
T Consensus 266 ~~v~~~L~~t~~ 277 (277)
T cd04843 266 IEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHhcCC
Confidence 999999999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-40 Score=349.75 Aligned_cols=250 Identities=28% Similarity=0.408 Sum_probs=189.4
Q ss_pred CceEEEEeecCCCCCCCCCCCCCCCCCCCCccc---eeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCC
Q 004077 141 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKG---ICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPR 217 (775)
Q Consensus 141 ~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g---~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (775)
+||+|||||||||++||+|.+. .|.. .+..+... +....+.. ..+++. ......+.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~-------~~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDD----DGNGYVDD---IYGWNF-------VNNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCccc----CCCCcccC---CCcccc-------cCCCCCCC
Confidence 6899999999999999999864 2321 11111100 00000000 000000 01224567
Q ss_pred CCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceE
Q 004077 218 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 297 (775)
Q Consensus 218 D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdV 297 (775)
|..+|||||||||+|...+ ...+.||||+|+|+.+|++... + .+...+++++|+++++.+++|
T Consensus 61 d~~~HGT~va~ii~~~~~~---------~~~~~GvAp~a~l~~~~~~~~~--~------~~~~~~~~~a~~~a~~~~~~v 123 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNN---------GIGIAGVAWNVKIMPLKFLGAD--G------SGTTSDAIKAIDYAVDMGAKI 123 (259)
T ss_pred CCCCcHHHHHHHHHCcCCC---------CCceEEeCCCCEEEEEEEeCCC--C------CcCHHHHHHHHHHHHHCCCeE
Confidence 8899999999999987432 2335799999999999999876 3 478899999999999999999
Q ss_pred EEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC---CCCC--CCCceEEecccccccccccceEeCCCc
Q 004077 298 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS---SLSN--LAPWLITVGAGSLDRDFVGPVVLGTGM 372 (775)
Q Consensus 298 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~--~~p~vitVgAs~~~~~~~~~~~~~~~~ 372 (775)
||+|||... ....+..++.++.++|++||+||||+|.... .++. ..+++|+||+.+.
T Consensus 124 in~S~G~~~----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~-------------- 185 (259)
T cd07473 124 INNSWGGGG----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS-------------- 185 (259)
T ss_pred EEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC--------------
Confidence 999999832 2567777888899999999999999986522 2222 3478899987542
Q ss_pred EEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEec
Q 004077 373 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 452 (775)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n 452 (775)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeC
Q 004077 453 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 532 (775)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~AP 532 (775)
.+.++.||++||. +||+.||
T Consensus 186 -----------------------------------------------------~~~~~~~s~~g~~-------~~~~~ap 205 (259)
T cd07473 186 -----------------------------------------------------NDALASFSNYGKK-------TVDLAAP 205 (259)
T ss_pred -----------------------------------------------------CCCcCcccCCCCC-------CcEEEec
Confidence 2356679999985 3599999
Q ss_pred CCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 533 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
|.++++..+. +.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 206 G~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 206 GVDILSTSPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCCeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999997665 68999999999999999999999999999999999999999984
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=4.1e-40 Score=339.78 Aligned_cols=227 Identities=32% Similarity=0.464 Sum_probs=186.1
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
||+|||||+||+++||+|.+. ++..++|.... .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~------------~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD------------NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC------------CCCCCCCCC
Confidence 799999999999999999743 11222222210 024567889
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||||++.... ..+.|+||+|+|+.+|+++.. + .....+++++++++++.+++|||||
T Consensus 42 HGT~vA~ii~~~~~~----------~~~~giap~a~i~~~~~~~~~--~------~~~~~~l~~ai~~a~~~~~~Vin~S 103 (229)
T cd07477 42 HGTHVAGIIAALDNG----------VGVVGVAPEADLYAVKVLNDD--G------SGTYSDIIAGIEWAIENGMDIINMS 103 (229)
T ss_pred CHHHHHHHHhcccCC----------CccEeeCCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHHHCCCCEEEEC
Confidence 999999999987421 145799999999999999876 3 3567899999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC--CCCCCceEEecccccccccccceEeCCCcEEeeeee
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 379 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 379 (775)
||... ....+..++..+.++|+++|+||||++...... +...+++|+||+++.
T Consensus 104 ~g~~~----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~--------------------- 158 (229)
T cd07477 104 LGGPS----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS--------------------- 158 (229)
T ss_pred CccCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC---------------------
Confidence 99832 234566677888999999999999999776554 566789999998542
Q ss_pred ccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc
Q 004077 380 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 459 (775)
Q Consensus 380 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~ 459 (775)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEc
Q 004077 460 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 539 (775)
Q Consensus 460 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa 539 (775)
.+.++.||++|+.. |+.|||.+|+++
T Consensus 159 ----------------------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~ 184 (229)
T cd07477 159 ----------------------------------------------NNNRASFSSTGPEV--------ELAAPGVDILST 184 (229)
T ss_pred ----------------------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEe
Confidence 23566899999976 999999999999
Q ss_pred ccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004077 540 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597 (775)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 597 (775)
++. +.|..++|||||||+|||++|||+|++|++++++||++|++|
T Consensus 185 ~~~-------------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 185 YPN-------------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred cCC-------------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 876 688999999999999999999999999999999999999976
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-40 Score=343.00 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=119.5
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 219 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 219 (775)
+++|+|||||||||++||+|.+. ++..+.|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999743 11222222210000 0001123578
Q ss_pred CCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEE
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 299 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 299 (775)
.||||||||||+ |+||+|+|+.+|+++....+ .....++...+++||+||+++|+||||
T Consensus 49 ~gHGT~vAgiI~-------------------gvap~a~i~~~kv~~~~~~~--~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 49 DGHGTAMARMIC-------------------RICPSAKLYVIKLEDRPSPD--SNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCcHHHHHHHHH-------------------HHCCCCeEEEEEecccCCCC--CcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 899999999995 78999999999999865211 001135778899999999999999999
Q ss_pred EccCCCCCC--CCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCC--CCCCceEEecccc
Q 004077 300 ISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLS--NLAPWLITVGAGS 357 (775)
Q Consensus 300 ~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~--~~~p~vitVgAs~ 357 (775)
||||..... ......+..++.+|.++|++||+||||+|.... .+. ...|++|+|||++
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 999983321 123567888889999999999999999997654 333 3458999999865
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=8.6e-41 Score=355.90 Aligned_cols=275 Identities=33% Similarity=0.442 Sum_probs=207.2
Q ss_pred EEEEeecCCCCCCCCCC-CCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCc
Q 004077 144 IVGLVDNGVWPESKSFS-DEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 222 (775)
Q Consensus 144 ~VgVIDtGid~~Hp~f~-d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 222 (775)
+|||||||||++||+|. .+ + ...++.+.+.|.+.. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 22 0 112333445554432 112355678899
Q ss_pred cccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-hCCceEEEEc
Q 004077 223 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RDGVHVLSIS 301 (775)
Q Consensus 223 GTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn~S 301 (775)
||||||||+|.. . . ......|+||+|+|+.+|++... + .....++++|++++ +++++|||||
T Consensus 49 GT~va~ii~~~~-~-~------~~~~~~Gva~~a~l~~~~i~~~~--~-------~~~~~~~~ai~~~~~~~~~~Vin~S 111 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-N------NGPGINGVAPNAKLYSYKIFDNS--G-------GTSSDLIEAIEYAVKNDGVDVINLS 111 (282)
T ss_dssp HHHHHHHHHHTT-S-S------SSSSETCSSTTSEEEEEECSSTT--S-------EEHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred cchhhhhccccc-c-c------ccccccccccccccccccccccc--c-------cccccccchhhhhhhccCCcccccc
Confidence 999999999985 1 1 12234799999999999997765 2 57888999999999 8999999999
Q ss_pred cCCCC--CCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC---CCCCCCceEEecccccccccccceEeCCCcEEee
Q 004077 302 IGTNQ--PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 376 (775)
Q Consensus 302 lG~~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g 376 (775)
||... ......+.+..+.+.+.++|+++|+||||+|+.... .+...+++|+||+++.
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------ 173 (282)
T PF00082_consen 112 FGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------ 173 (282)
T ss_dssp EEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------
T ss_pred ccccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------
Confidence 98822 112233445666778899999999999999876543 3334478899987431
Q ss_pred eeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC
Q 004077 377 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 456 (775)
Q Consensus 377 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 456 (775)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcE
Q 004077 457 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 536 (775)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I 536 (775)
.+.++.||++|+... ++++||||+|||.+|
T Consensus 174 -------------------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i 203 (282)
T PF00082_consen 174 -------------------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNI 203 (282)
T ss_dssp -------------------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSE
T ss_pred -------------------------------------------------ccccccccccccccc-ccccccccccccccc
Confidence 235678999976543 589999999999999
Q ss_pred EEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCC
Q 004077 537 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIA 616 (775)
Q Consensus 537 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 616 (775)
++.++.... ..|..++|||||||+|||++||++|++|.+++++||.+|++||.+....+ ...
T Consensus 204 ~~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~ 265 (282)
T PF00082_consen 204 LSAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEG 265 (282)
T ss_dssp EEEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSS
T ss_pred ccccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCC
Confidence 988876210 35888999999999999999999999999999999999999999887211 233
Q ss_pred CCCccceeccCccccCC
Q 004077 617 TPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 617 ~~~~~G~G~vn~~~Al~ 633 (775)
.+..||+|+||+.+||+
T Consensus 266 ~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 266 YDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHTTSBE-HHHHHH
T ss_pred CCCCccCChhCHHHHhC
Confidence 56788999999999874
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=7.5e-40 Score=350.87 Aligned_cols=255 Identities=23% Similarity=0.241 Sum_probs=174.6
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
.|+|||||||||++||+|++.-. ...+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS--------------------------SYSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc--------------------------ccccccccCCCcCCccccccCCCCcCCCCCC
Confidence 38999999999999999975311 0000110000000000000111234567899
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||+|+|+. . ..||||+|+|+.+|+++.. + .....+++++|++|++++++|||||
T Consensus 55 HGT~vAgiia~~~---------~----~~GvAp~a~i~~~~v~~~~--~------~~~~~~~~~ai~~a~~~~~~vin~S 113 (294)
T cd07482 55 HGTAVAGQIAANG---------N----IKGVAPGIGIVSYRVFGSC--G------SAESSWIIKAIIDAADDGVDVINLS 113 (294)
T ss_pred cHhHHHHHHhcCC---------C----CceeCCCCEEEEEEeecCC--C------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 9999999999862 1 2499999999999999876 3 2478899999999999999999999
Q ss_pred cCCCCCCCC-------CccHHHHHHHHHHcCCcEEEEecCCCCCCCCC----------------------CCCCCCceEE
Q 004077 302 IGTNQPFAF-------NRDGIAIGALNAVKHNILVACSAGNSGPAPSS----------------------LSNLAPWLIT 352 (775)
Q Consensus 302 lG~~~~~~~-------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~~p~vit 352 (775)
||....... ..+.+..++..+.++|++||+||||+|..... .+...+++|+
T Consensus 114 ~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~ 193 (294)
T cd07482 114 LGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVIT 193 (294)
T ss_pred CccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEE
Confidence 998432211 12346667777889999999999999965311 1112244444
Q ss_pred ecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcc
Q 004077 353 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 432 (775)
Q Consensus 353 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 432 (775)
|||++
T Consensus 194 Vga~~--------------------------------------------------------------------------- 198 (294)
T cd07482 194 VSATD--------------------------------------------------------------------------- 198 (294)
T ss_pred EEeeC---------------------------------------------------------------------------
Confidence 44432
Q ss_pred hhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccc
Q 004077 433 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 512 (775)
Q Consensus 433 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 512 (775)
..+.++.|
T Consensus 199 ------------------------------------------------------------------------~~~~~~~~ 206 (294)
T cd07482 199 ------------------------------------------------------------------------NNGNLSSF 206 (294)
T ss_pred ------------------------------------------------------------------------CCCCcCcc
Confidence 13467789
Q ss_pred cCCCCCCCCCCCCCCceeeCCCcEEEcccCCCC---CCc------ccCCccccccEEeeccCchhhHHHHHHHHHHHhCC
Q 004077 513 TSRGPNALDPYILKPDITAPGLNILAAWSEASS---PSK------LAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP 583 (775)
Q Consensus 513 SS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P 583 (775)
|++|+.. +|++|||+++......... ... .......+.|..++|||||||+|||++|||+|++|
T Consensus 207 S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p 279 (294)
T cd07482 207 SNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNP 279 (294)
T ss_pred ccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCC
Confidence 9998754 3999999998532211100 000 00112336899999999999999999999999999
Q ss_pred CCCH-HHHHHHHHhc
Q 004077 584 DWSS-AAIRSALMTT 597 (775)
Q Consensus 584 ~~s~-~~ik~~L~~T 597 (775)
.+++ .+||++|++|
T Consensus 280 ~~~~~~~v~~~L~~T 294 (294)
T cd07482 280 LKKPPDEAIRILYNT 294 (294)
T ss_pred CCCcHHHHHHHHhhC
Confidence 9999 9999999986
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.3e-39 Score=349.44 Aligned_cols=247 Identities=20% Similarity=0.161 Sum_probs=179.4
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|+|||||||++||+|.+.... ...++|....
T Consensus 30 ~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~----------- 73 (297)
T cd04059 30 PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND----------- 73 (297)
T ss_pred HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC-----------
Confidence 8999999999999999999999999999754210 0112222110
Q ss_pred CCCCC--CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 212 DDRSP--RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 212 ~~~~~--~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
....+ .|..||||||||||+|+.... ....||||+|+|+.+|++... ........++.+
T Consensus 74 ~~~~~~~~~~~gHGT~vAgiiag~~~~~---------~~~~GvAp~a~l~~~~~~~~~----------~~~~~~~~~~~~ 134 (297)
T cd04059 74 PDPTPRYDDDNSHGTRCAGEIAAVGNNG---------ICGVGVAPGAKLGGIRMLDGD----------VTDVVEAESLGL 134 (297)
T ss_pred CCCCCccccccccCcceeeEEEeecCCC---------cccccccccceEeEEEecCCc----------cccHHHHHHHhc
Confidence 01122 278899999999999984221 134699999999999998754 234455566665
Q ss_pred HHhCCceEEEEccCCCCCCC---CCccHHHHHHHHHHc-----CCcEEEEecCCCCCCCCCC----CCCCCceEEecccc
Q 004077 290 AIRDGVHVLSISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPSSL----SNLAPWLITVGAGS 357 (775)
Q Consensus 290 a~~~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~~----~~~~p~vitVgAs~ 357 (775)
+.+ .++|||||||...... ........++.++.+ +|++||+||||+|...... ....|++|+|||++
T Consensus 135 ~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~ 213 (297)
T cd04059 135 NPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213 (297)
T ss_pred ccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC
Confidence 544 5699999999843221 122233444444443 6999999999999732221 12347899999854
Q ss_pred cccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhh
Q 004077 358 LDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 437 (775)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~ 437 (775)
.
T Consensus 214 ~------------------------------------------------------------------------------- 214 (297)
T cd04059 214 A------------------------------------------------------------------------------- 214 (297)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred hHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCC
Q 004077 438 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 517 (775)
Q Consensus 438 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP 517 (775)
.+.++.||++|+
T Consensus 215 --------------------------------------------------------------------~g~~~~~s~~g~ 226 (297)
T cd04059 215 --------------------------------------------------------------------NGVRASYSEVGS 226 (297)
T ss_pred --------------------------------------------------------------------CCCCcCCCCCCC
Confidence 246678999999
Q ss_pred CCCCCCCCCCceeeCCCc-------EEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHH
Q 004077 518 NALDPYILKPDITAPGLN-------ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAI 590 (775)
Q Consensus 518 ~~~~d~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~i 590 (775)
.. +++|||.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.+|
T Consensus 227 ~~--------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v 288 (297)
T cd04059 227 SV--------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDV 288 (297)
T ss_pred cE--------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHH
Confidence 87 89999987 776655410 146788999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 004077 591 RSALMTTAW 599 (775)
Q Consensus 591 k~~L~~TA~ 599 (775)
|++|++||+
T Consensus 289 ~~~L~~TA~ 297 (297)
T cd04059 289 QHILALTAR 297 (297)
T ss_pred HHHHHHhcC
Confidence 999999985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.7e-39 Score=330.16 Aligned_cols=222 Identities=21% Similarity=0.242 Sum_probs=172.8
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
||+|||||||||++||+|.+.-. ..+.+..+ . ...+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~-~-------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDL-E-------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccc-c-------cccCCCCCCCCCC
Confidence 79999999999999999975311 00111000 0 0011234567889
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||||++ .+|+++|+.+|+++.. + .+..+.+++||+|++++|++|||||
T Consensus 46 HGT~vAgiia~-------------------~~p~~~i~~~~v~~~~--~------~~~~~~~~~ai~~a~~~~v~Vin~S 98 (222)
T cd07492 46 HGTACAGIIKK-------------------YAPEAEIGSIKILGED--G------RCNSFVLEKALRACVENDIRIVNLS 98 (222)
T ss_pred cHHHHHHHHHc-------------------cCCCCeEEEEEEeCCC--C------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 99999999984 3599999999999876 3 4788999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCcEEeeeeecc
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 381 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 381 (775)
||... ......+..+++++.++|+++|+||||++.... .+...+++|+|++.+.+.
T Consensus 99 ~G~~~--~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 99 LGGPG--DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCCCC--CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------
Confidence 99832 223356677888888999999999999986533 245568899999753211
Q ss_pred CCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc
Q 004077 382 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 461 (775)
Q Consensus 382 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 461 (775)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEccc
Q 004077 462 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 541 (775)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~ 541 (775)
.. +.+++ ++|+.|||.+|+++.+
T Consensus 155 ----------------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~ 177 (222)
T cd07492 155 ----------------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAP 177 (222)
T ss_pred ----------------------------------------------Cc---ccccC--------CceEEeCCCCeEeecC
Confidence 11 11233 3499999999999987
Q ss_pred CCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 542 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
. +.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 178 ~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 178 H-------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred C-------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 6 68999999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=5.4e-38 Score=331.44 Aligned_cols=245 Identities=31% Similarity=0.353 Sum_probs=186.0
Q ss_pred CCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCC
Q 004077 139 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 218 (775)
Q Consensus 139 ~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 218 (775)
+|+||+|+|||+||+++||+|.+..... ..+..... .......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~~---------~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVND---------AGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------cccccccc---------ccCCCCCC
Confidence 6999999999999999999997542100 00000000 00124457
Q ss_pred CCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEE
Q 004077 219 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 298 (775)
Q Consensus 219 ~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVI 298 (775)
..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++.... .+....+.++++++++.+++||
T Consensus 45 ~~~HGT~vagiiag~~~~----------~~~~GiAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Vi 107 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG----------GGMHGVAPDATLYSARASASAGS-------TFSDADIAAAYDFLAASGVRII 107 (267)
T ss_pred CCChHHHHHHHHhcCcCC----------CCcccCCcCCEEEEEeccCCCCc-------ccchHHHHHHHHHHHhCCCeEE
Confidence 789999999999987422 34579999999999999986521 2567889999999999999999
Q ss_pred EEccCCCCCCC-----------CCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC---------CCCCceEEeccccc
Q 004077 299 SISIGTNQPFA-----------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---------NLAPWLITVGAGSL 358 (775)
Q Consensus 299 n~SlG~~~~~~-----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~~p~vitVgAs~~ 358 (775)
|||||...... .....+....+.+.++|+++|+||||++....... ...+++|+||+++.
T Consensus 108 n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~ 187 (267)
T cd04848 108 NNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDP 187 (267)
T ss_pred EccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecC
Confidence 99999853221 24556677778899999999999999986543322 23478899998653
Q ss_pred ccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhh
Q 004077 359 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 438 (775)
Q Consensus 359 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~ 438 (775)
+.
T Consensus 188 ~~------------------------------------------------------------------------------ 189 (267)
T cd04848 188 NG------------------------------------------------------------------------------ 189 (267)
T ss_pred CC------------------------------------------------------------------------------
Confidence 22
Q ss_pred HhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCcccc--ccCCC
Q 004077 439 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMAN--FTSRG 516 (775)
Q Consensus 439 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~G 516 (775)
.... ||++|
T Consensus 190 ---------------------------------------------------------------------~~~~~~~s~~~ 200 (267)
T cd04848 190 ---------------------------------------------------------------------TIASYSYSNRC 200 (267)
T ss_pred ---------------------------------------------------------------------Ccccccccccc
Confidence 2223 48887
Q ss_pred CCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 004077 517 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 596 (775)
Q Consensus 517 P~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~ 596 (775)
+.. ..+++.|||.+|+++.+.. ...|..++|||||||+|||++||++|++|.+++++||++|++
T Consensus 201 ~~~-----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~ 264 (267)
T cd04848 201 GVA-----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLT 264 (267)
T ss_pred hhh-----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHh
Confidence 643 2347999999999998731 157889999999999999999999999999999999999999
Q ss_pred ccc
Q 004077 597 TAW 599 (775)
Q Consensus 597 TA~ 599 (775)
||+
T Consensus 265 tA~ 267 (267)
T cd04848 265 TAT 267 (267)
T ss_pred hcC
Confidence 985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-35 Score=312.46 Aligned_cols=363 Identities=25% Similarity=0.322 Sum_probs=262.9
Q ss_pred CceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhh------hcceEEeeceeEeEEEEEcCH-----HHHHhhcc-
Q 004077 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEA------RASHLYSYKHSINGFSAVLTP-----DEAARLSE- 90 (775)
Q Consensus 23 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~i~~~y~~~~ng~~~~l~~-----~~~~~L~~- 90 (775)
...|||.|+..- ....|+.++++.+...+.. +...-.+|...|.-+-++=.. -++++|..
T Consensus 49 e~EyIv~F~~y~--------~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~h 120 (1033)
T KOG4266|consen 49 ESEYIVRFKQYK--------PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMH 120 (1033)
T ss_pred cceeEEEecccc--------cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcC
Confidence 358999999655 2235777888777643311 111233455545544443322 24667776
Q ss_pred -ccceEEecCCCcccccc------------cCCcccc-ccch---hh----hcccC-c--------cc--ccccccccCC
Q 004077 91 -EVVSVYPSHPEKYSLQT------------TRSWEFV-GLDE---VA----KQNWN-H--------FN--MGQDLLSKAR 138 (775)
Q Consensus 91 -~V~~V~~~~~~~~~~~~------------~~s~~~~-gl~~---~~----~~~~~-~--------~~--~~~~~~~~~~ 138 (775)
.|+.|.|-+ .+..-. +.+-.++ |... .+ ..+++ | .. .++.+|..|+
T Consensus 121 p~vk~v~pqr--~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~Gy 198 (1033)
T KOG4266|consen 121 PDVKVVFPQR--RVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGY 198 (1033)
T ss_pred CCceeecchh--hhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccc
Confidence 888888877 432210 0000000 1000 00 00000 1 01 2358999999
Q ss_pred CCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCC
Q 004077 139 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 218 (775)
Q Consensus 139 ~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 218 (775)
+|++|+|||.|||+.-+||.|+.- -...+++++ ....|
T Consensus 199 TGa~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD 236 (1033)
T KOG4266|consen 199 TGAKVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDD 236 (1033)
T ss_pred cCCceEEEEeecccccCCccccch----------------------------hhhcCCcCc--------------ccccc
Confidence 999999999999999999999742 011112221 24557
Q ss_pred CCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEE
Q 004077 219 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 298 (775)
Q Consensus 219 ~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVI 298 (775)
..||||.|||+|||.. ...|.||+++|++.|||-+.. -...+..++|+.||+..+.||+
T Consensus 237 ~lgHGTFVAGvia~~~-------------ec~gfa~d~e~~~frvft~~q--------VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRN-------------ECLGFASDTEIYAFRVFTDAQ--------VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred CcccceeEeeeeccch-------------hhcccCCccceeEEEeeccce--------eehhhHHHHHHHHHHhhhcceE
Confidence 8899999999999873 236999999999999998763 3688999999999999999999
Q ss_pred EEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCC--ceEEecccccccccccceEeCCCcEEee
Q 004077 299 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAP--WLITVGAGSLDRDFVGPVVLGTGMEIIG 376 (775)
Q Consensus 299 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgAs~~~~~~~~~~~~~~~~~~~g 376 (775)
|+|+|++ ++.+.|+-..+..+...+|++|.|+||+||-.++..+++. .||-||..
T Consensus 296 NLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI-------------------- 352 (1033)
T KOG4266|consen 296 NLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI-------------------- 352 (1033)
T ss_pred eeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc--------------------
Confidence 9999993 4667788777778889999999999999999999988763 56666632
Q ss_pred eeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC
Q 004077 377 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 456 (775)
Q Consensus 377 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 456 (775)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCCCCceeeC
Q 004077 457 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKPDITAP 532 (775)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~----~d~~~KPDI~AP 532 (775)
...+.+|.|||||-+.. .-+|+||||++-
T Consensus 353 -----------------------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 353 -----------------------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred -----------------------------------------------cccchhhhhccCCcceeecCCcccccCCceEee
Confidence 12468999999996542 248999999999
Q ss_pred CCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCcc
Q 004077 533 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMKNNKALPI 608 (775)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~~~~g~~~ 608 (775)
|.+|...... .+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+.+|.+++..
T Consensus 386 G~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 9999877655 6778899999999999999999976 334578999999999999998753
Q ss_pred cCCCCCCCCCCccceeccCccccCC
Q 004077 609 TNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 609 ~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
.-++||+|++|+.++++
T Consensus 449 --------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 449 --------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred --------chhhccCcchhHHHHHH
Confidence 45789999999999876
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=313.29 Aligned_cols=241 Identities=24% Similarity=0.261 Sum_probs=186.3
Q ss_pred CCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEE
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 299 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 299 (775)
.-|||||||||+|+..+... ..||||+|+|+.+++-+..... ..+...+.+|+..++++++||||
T Consensus 310 g~HGTHVAgIa~anhpe~p~---------~NGvAPgaqIvSl~IGD~RLgs------METgtaltRA~~~v~e~~vDiIN 374 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE---------LNGVAPGAQIVSLKIGDGRLGS------METGTALTRAMIEVIEHNVDIIN 374 (1304)
T ss_pred CCCcceehhhhccCCCCCcc---------ccCCCCCCEEEEEEecCccccc------cccchHHHHHHHHHHHhcCCEEE
Confidence 45999999999999765443 3499999999999997654311 34566799999999999999999
Q ss_pred EccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCC---CceEEecccccccccccceEeCCCcEEee
Q 004077 300 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA---PWLITVGAGSLDRDFVGPVVLGTGMEIIG 376 (775)
Q Consensus 300 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~---p~vitVgAs~~~~~~~~~~~~~~~~~~~g 376 (775)
||+|-+...+.....++.+-..+.+.|+++|+||||+||...+++.+. ..+|.|||.-...+..+...+
T Consensus 375 mSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~-------- 446 (1304)
T KOG1114|consen 375 MSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSV-------- 446 (1304)
T ss_pred eccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhh--------
Confidence 999985444444556666666667899999999999999988877643 588889884322211110000
Q ss_pred eeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC
Q 004077 377 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 456 (775)
Q Consensus 377 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 456 (775)
T Consensus 447 -------------------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 447 -------------------------------------------------------------------------------- 446 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcE
Q 004077 457 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 536 (775)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I 536 (775)
..+-......||||||+. ||.+--.|+|||+.|
T Consensus 447 ---------------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAi 479 (1304)
T KOG1114|consen 447 ---------------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAI 479 (1304)
T ss_pred ---------------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccc
Confidence 001134577899999998 799999999999998
Q ss_pred EEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhcccccCCCCCcccCCC
Q 004077 537 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAAIRSALMTTAWMKNNKALPITNAD 612 (775)
Q Consensus 537 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (775)
.+.-.- .- ..-..|.|||||+|+++|.+|||++. +-.|||..||.+|++||.++++.
T Consensus 480 AsVP~~-tl----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------- 540 (1304)
T KOG1114|consen 480 ASVPQY-TL----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------- 540 (1304)
T ss_pred cCCchh-hh----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------
Confidence 664211 10 45678999999999999999999764 56899999999999999998764
Q ss_pred CCCCCCCccceeccCccccCC
Q 004077 613 GSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 613 ~~~~~~~~~G~G~vn~~~Al~ 633 (775)
.++.||.|+|++.+|.+
T Consensus 541 ----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 ----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ----chhccCcceeehhHHHH
Confidence 67899999999999986
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-33 Score=292.15 Aligned_cols=195 Identities=24% Similarity=0.241 Sum_probs=141.8
Q ss_pred CCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH--HhC
Q 004077 216 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA--IRD 293 (775)
Q Consensus 216 ~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a--~~~ 293 (775)
..|..||||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.
T Consensus 33 ~~~~~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~------------~~~~~~~~~i~~~~~~~~ 84 (247)
T cd07488 33 NNTFDDHATLVASIMGGR----------------DGGLPAVNLYSSAFGI------------KSNNGQWQECLEAQQNGN 84 (247)
T ss_pred CCCCCCHHHHHHHHHHhc----------------cCCCCccceehhhhCC------------CCCCccHHHHHHHHHhcC
Confidence 457899999999999986 2667999998766522 1223456677777 567
Q ss_pred CceEEEEccCCCCCCC-----CCccHHHHHHHHHHcC-CcEEEEecCCCCCCCCC-----CCCCCCceEEeccccccccc
Q 004077 294 GVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKH-NILVACSAGNSGPAPSS-----LSNLAPWLITVGAGSLDRDF 362 (775)
Q Consensus 294 gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~-----~~~~~p~vitVgAs~~~~~~ 362 (775)
+++|||||||...... ...+.+..+++.+.++ |+++|+||||+|..... .+..++++|+|||++....
T Consensus 85 gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~- 163 (247)
T cd07488 85 NVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD- 163 (247)
T ss_pred CceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-
Confidence 9999999999843322 2334567777777666 99999999999975322 2234578999998653220
Q ss_pred ccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhh
Q 004077 363 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 442 (775)
Q Consensus 363 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~ 442 (775)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004077 443 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 522 (775)
Q Consensus 443 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d 522 (775)
....+.||++|-....+
T Consensus 164 ---------------------------------------------------------------~~~~s~~sn~~~~~~~~ 180 (247)
T cd07488 164 ---------------------------------------------------------------RFFASDVSNAGSEINSY 180 (247)
T ss_pred ---------------------------------------------------------------cceecccccccCCCCCC
Confidence 01234566654222225
Q ss_pred CCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCH------HHHHHHHHh
Q 004077 523 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS------AAIRSALMT 596 (775)
Q Consensus 523 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~------~~ik~~L~~ 596 (775)
+..||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|++
T Consensus 181 ~~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~ 245 (247)
T cd07488 181 GRRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSS 245 (247)
T ss_pred CCceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhc
Confidence 7899999999999998 32 57889999999999999999999999887764 456666666
Q ss_pred c
Q 004077 597 T 597 (775)
Q Consensus 597 T 597 (775)
|
T Consensus 246 ~ 246 (247)
T cd07488 246 S 246 (247)
T ss_pred c
Confidence 5
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.1e-30 Score=270.24 Aligned_cols=197 Identities=34% Similarity=0.443 Sum_probs=156.7
Q ss_pred CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-hC
Q 004077 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RD 293 (775)
Q Consensus 215 ~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~-~~ 293 (775)
...+..+||||||++|++..... ...|+||+++|+.+|+.... + ......+++++++++ ..
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~----------~~~g~a~~a~i~~~~~~~~~--~------~~~~~~~~~ai~~~~~~~ 100 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG----------GGVGVAPGAKLIPVKVLDGD--G------SGSSSDIAAAIDYAAADQ 100 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC----------CCEEeCCCCEEEEEEEecCC--C------CcCHHHHHHHHHHHHhcc
Confidence 45567899999999999874221 12699999999999998765 2 367889999999999 89
Q ss_pred CceEEEEccCCCCCCCCCccHHHHHHHHHHcC-CcEEEEecCCCCCCCC---CCCCCCCceEEecccccccccccceEeC
Q 004077 294 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLG 369 (775)
Q Consensus 294 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~ 369 (775)
+++|||||||..... ....+...+..+.++ |+++|+||||.+.... ......+++|+||+++.+.
T Consensus 101 ~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~--------- 169 (241)
T cd00306 101 GADVINLSLGGPGSP--PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG--------- 169 (241)
T ss_pred CCCEEEeCCCCCCCC--CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC---------
Confidence 999999999994221 345677777888888 9999999999997765 3556679999999865322
Q ss_pred CCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEE
Q 004077 370 TGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLI 449 (775)
Q Consensus 370 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i 449 (775)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc-cccCCCCCCCCCCCCCCc
Q 004077 450 LGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA-NFTSRGPNALDPYILKPD 528 (775)
Q Consensus 450 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~GP~~~~d~~~KPD 528 (775)
... .++++|+ |||
T Consensus 170 ----------------------------------------------------------~~~~~~~~~~~--------~~~ 183 (241)
T cd00306 170 ----------------------------------------------------------TPASPSSNGGA--------GVD 183 (241)
T ss_pred ----------------------------------------------------------CccCCcCCCCC--------Cce
Confidence 111 3444444 569
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004077 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597 (775)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 597 (775)
+.|||.++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 184 ~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 184 IAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred EEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999875111 11689999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.4e-24 Score=243.77 Aligned_cols=250 Identities=29% Similarity=0.432 Sum_probs=186.7
Q ss_pred ccccc--CCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCC
Q 004077 132 DLLSK--ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 209 (775)
Q Consensus 132 ~~~~~--~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 209 (775)
..|.. +++|+||.|+|||+||+..||+|.+... ..++|.+.
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~---------- 173 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDG---------- 173 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccC----------
Confidence 57776 8999999999999999999999975421 00122221
Q ss_pred CCCCC-CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHH
Q 004077 210 TEDDR-SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 288 (775)
Q Consensus 210 ~~~~~-~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~ 288 (775)
... ...|..+|||||+|++++.... ......|+||+++++.+|++.... | .....+++.+|+
T Consensus 174 --~~~~~~~d~~~hGt~vag~ia~~~~~--------~~~~~~g~a~~~~~~~~~~~~~~~-g------~~~~~~~~~~i~ 236 (508)
T COG1404 174 --DPEPPFLDDNGHGTHVAGTIAAVIFD--------NGAGVAGVAPGAKLLLVKVLGSGG-G------SGELSDVAEGIE 236 (508)
T ss_pred --CCCCCCCCCCCCcceeeeeeeeeccc--------CCCccccccCCCcEEEEEeccCCC-C------cccHHHHHHHHH
Confidence 011 2568899999999999984211 112357999999999999998653 3 467888899999
Q ss_pred HHHhCC--ceEEEEccCCCCCCCCCccHHHHHHHHHHcCC-cEEEEecCCCCCCCCC----CCCCC--CceEEecccccc
Q 004077 289 DAIRDG--VHVLSISIGTNQPFAFNRDGIAIGALNAVKHN-ILVACSAGNSGPAPSS----LSNLA--PWLITVGAGSLD 359 (775)
Q Consensus 289 ~a~~~g--vdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVgAs~~~ 359 (775)
++++.+ +++||||+|.. ........+..++..+...| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 237 ~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~- 314 (508)
T COG1404 237 GAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL- 314 (508)
T ss_pred HHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-
Confidence 999999 99999999983 22234455666677777777 9999999999866421 11111 35666665321
Q ss_pred cccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhH
Q 004077 360 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 439 (775)
Q Consensus 360 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~ 439 (775)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004077 440 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 519 (775)
Q Consensus 440 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 519 (775)
.+.++.||++|+..
T Consensus 315 ------------------------------------------------------------------~~~~~~~s~~g~~~ 328 (508)
T COG1404 315 ------------------------------------------------------------------SDTVASFSNDGSPT 328 (508)
T ss_pred ------------------------------------------------------------------CCccccccccCCCC
Confidence 24677899999741
Q ss_pred CCCCCCCCceeeCCCcEEE-----cccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCC-CCCHHHHHHH
Q 004077 520 LDPYILKPDITAPGLNILA-----AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP-DWSSAAIRSA 593 (775)
Q Consensus 520 ~~d~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~~s~~~ik~~ 593 (775)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..
T Consensus 329 ------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~ 391 (508)
T COG1404 329 ------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNL 391 (508)
T ss_pred ------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHH
Confidence 1299999999998 444310 2499999999999999999999999999 8999999999
Q ss_pred HHhcccc
Q 004077 594 LMTTAWM 600 (775)
Q Consensus 594 L~~TA~~ 600 (775)
+..++..
T Consensus 392 ~~~~~~~ 398 (508)
T COG1404 392 IVTTAGL 398 (508)
T ss_pred Hhhcccc
Confidence 8888874
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.4e-20 Score=190.03 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=102.8
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..|++|++|.++|.|.||||.|||+..+ ..--..++|..+..+.
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n-------------------------ynaeasydfssndpfp-------- 198 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-------------------------YNAEASYDFSSNDPFP-------- 198 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc-------------------------cCceeecccccCCCCC--------
Confidence 8999999999999999999999999999632 1112234444432111
Q ss_pred CCCCCCC--CCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 212 DDRSPRD--MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 212 ~~~~~~D--~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
+.-..| .+.|||.|||-+++...++.. | .|||.+.++..+|.++. -...|+++|-..
T Consensus 199 -yprytddwfnshgtrcagev~aardngic---g------vgvaydskvagirmldq-----------pymtdlieansm 257 (629)
T KOG3526|consen 199 -YPRYTDDWFNSHGTRCAGEVVAARDNGIC---G------VGVAYDSKVAGIRMLDQ-----------PYMTDLIEANSM 257 (629)
T ss_pred -CCcccchhhhccCccccceeeeeccCCce---e------eeeeeccccceeeecCC-----------chhhhhhhhccc
Confidence 111122 578999999998776544433 2 49999999999999875 356677765322
Q ss_pred HHh-CCceEEEEccCCCCCCCCCcc---HHHHHHHHHHc-----CCcEEEEecCCCCCC
Q 004077 290 AIR-DGVHVLSISIGTNQPFAFNRD---GIAIGALNAVK-----HNILVACSAGNSGPA 339 (775)
Q Consensus 290 a~~-~gvdVIn~SlG~~~~~~~~~~---~~~~a~~~a~~-----~Gi~vV~AAGN~G~~ 339 (775)
--+ ..++|.+-|||..+.....+. ...+++-+-+. .|-++|.|.|..|.+
T Consensus 258 ghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 258 GHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred CCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 211 367999999998654333333 33334333333 356999999998854
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.69 E-value=1.6e-16 Score=174.26 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=78.4
Q ss_pred cceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---CceEEEEccCCCCCC--CCCccHHHHHHHH
Q 004077 247 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSISIGTNQPF--AFNRDGIAIGALN 321 (775)
Q Consensus 247 g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~--~~~~~~~~~a~~~ 321 (775)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||||||..... ....+.+..++.+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~------------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~ 148 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV------------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQ 148 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC------------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHH
Confidence 346799999999999997532 34577888888887 999999999984221 1123567777888
Q ss_pred HHcCCcEEEEecCCCCCCCCC-----------CCCCCCceEEeccccccc
Q 004077 322 AVKHNILVACSAGNSGPAPSS-----------LSNLAPWLITVGAGSLDR 360 (775)
Q Consensus 322 a~~~Gi~vV~AAGN~G~~~~~-----------~~~~~p~vitVgAs~~~~ 360 (775)
|..+||+||+||||+|..... .+...|+|++||+++...
T Consensus 149 a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 149 AAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred HHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999999999976532 234569999999987654
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.31 E-value=2.3e-11 Score=113.09 Aligned_cols=123 Identities=51% Similarity=0.825 Sum_probs=99.7
Q ss_pred eEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCc-chhhhhhHhhhcC
Q 004077 366 VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAG 444 (775)
Q Consensus 366 ~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~k~~~~~~~G 444 (775)
++|+|++++.|++++.... ..+++++.... ........|.+..++..+++||||||+|+.| .+.+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999997665 56677763321 1234557899988888999999999999999 9999999999999
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEE
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAI 493 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 493 (775)
|.|+|++++.............+|.+.|+.++|..|++|++++.+++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999986544333333468999999999999999999988766554
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.30 E-value=1.8e-11 Score=116.26 Aligned_cols=106 Identities=26% Similarity=0.344 Sum_probs=83.2
Q ss_pred cCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcccc-CCccccEEEEeHHHHHHHHHHHhcC
Q 004077 409 CLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSY-DAHYLPATAVLYDDAIKIHEYIKST 487 (775)
Q Consensus 409 c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~-~~~~~p~~~i~~~~g~~l~~~~~~~ 487 (775)
|...++...+++|||+||+|+.|.|.+|..+++.+||.++|++|+......... ....+|+++|+.++|..|.+|+++
T Consensus 36 g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~- 114 (143)
T cd02133 36 GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES- 114 (143)
T ss_pred CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC-
Confidence 555566677899999999999999999999999999999999998653222211 135789999999999999999988
Q ss_pred CCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004077 488 NNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 519 (775)
Q Consensus 488 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 519 (775)
++++....+.. ..+.+.++.||||||+.
T Consensus 115 ---~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 115 ---SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred ---CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 34444443333 45677899999999963
No 46
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.86 E-value=1.1e-08 Score=94.50 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=74.0
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCC---cccc--CCccccEEEEeHHHHHHH
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN---EYSY--DAHYLPATAVLYDDAIKI 480 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~---~~~~--~~~~~p~~~i~~~~g~~l 480 (775)
...|.+.++...+++|||+||+||.|.|.+|.++++++||.++|++|+..... .... ....+|.++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47799988888899999999999999999999999999999999999865321 1111 345799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004077 481 HEYIKSTNNPTAI 493 (775)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (775)
++++..+.+++++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999988776654
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.85 E-value=1.5e-08 Score=94.86 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=74.9
Q ss_pred CCCCcCCCCC--CCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHH
Q 004077 405 ETNQCLPGSL--TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAI 478 (775)
Q Consensus 405 ~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~ 478 (775)
....|.+... ++.+++|+|+|++||.|.|.+|..+++++||.++|+||+...+.... .....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998877 56789999999999999999999999999999999999876222121 22357899999999999
Q ss_pred HHHHHHhcCCCceEEE
Q 004077 479 KIHEYIKSTNNPTAII 494 (775)
Q Consensus 479 ~l~~~~~~~~~~~~~i 494 (775)
.|++++..+.+++++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999988776653
No 48
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.83 E-value=2e-08 Score=91.49 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=72.8
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCC-Cccc-------cCCccccEEEEeHHHH
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-NEYS-------YDAHYLPATAVLYDDA 477 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-~~~~-------~~~~~~p~~~i~~~~g 477 (775)
...|.+... ..+++|+|+|++||.|.|.+|..+++++||.++|+||+.... .... .....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 568999999999999999999999999999999999976431 1111 2345899999999999
Q ss_pred HHHHHHHhcCCCceEEEE
Q 004077 478 IKIHEYIKSTNNPTAIIK 495 (775)
Q Consensus 478 ~~l~~~~~~~~~~~~~i~ 495 (775)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999988877653
No 49
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.82 E-value=1.8e-08 Score=91.15 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=69.3
Q ss_pred CCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc--cc--cCCccccEEEEeHHHHHHH
Q 004077 405 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--YS--YDAHYLPATAVLYDDAIKI 480 (775)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l 480 (775)
....|.+.++.+.+++|||+|++||+|+|.+|..+++.+||.++|+||+...... .. .....||+++|+.++|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 3467999998888999999999999999999999999999999999998652111 11 1346789999999999999
Q ss_pred HHHHhcC
Q 004077 481 HEYIKST 487 (775)
Q Consensus 481 ~~~~~~~ 487 (775)
.+.+.+.
T Consensus 109 ~~~l~~~ 115 (120)
T cd02129 109 QQTFGDS 115 (120)
T ss_pred HHHhccC
Confidence 9877643
No 50
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.73 E-value=6.1e-08 Score=88.93 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHHHH
Q 004077 405 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIKI 480 (775)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 480 (775)
....|.+.... .+++|||+||+|+.|.|.+|..+++++||.|+|++|+........ .....+|+++|+.++|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45679888874 469999999999999999999999999999999999865421111 1235799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004077 481 HEYIKSTNNPTAI 493 (775)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (775)
++|++.+..++++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988766553
No 51
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.71 E-value=6e-08 Score=89.72 Aligned_cols=86 Identities=26% Similarity=0.339 Sum_probs=69.7
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCC-----Cc--cc-----cCCccccEEEEe
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-----NE--YS-----YDAHYLPATAVL 473 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-----~~--~~-----~~~~~~p~~~i~ 473 (775)
...|.+..+ +.+++|||+|++||.|+|.+|.++++++||.++|++|+.... .. .. .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 567999999999999999999999999999999999875432 11 11 124689999999
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 004077 474 YDDAIKIHEYIKSTNNPTA 492 (775)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~ 492 (775)
..+|+.|++++..+..+++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999998876654
No 52
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.69 E-value=2.2e-08 Score=89.02 Aligned_cols=79 Identities=32% Similarity=0.450 Sum_probs=64.3
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC----CCCccccCCccccEEEEeHHHHHHHH
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA----NGNEYSYDAHYLPATAVLYDDAIKIH 481 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~ 481 (775)
...|.+..+...+++||||||+||.|+|.+|..+++++||.|+|++|... ...........+|+++|+.++|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45577778889999999999999999999999999999999999999211 11223345689999999999999999
Q ss_pred HHH
Q 004077 482 EYI 484 (775)
Q Consensus 482 ~~~ 484 (775)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
No 53
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.67 E-value=9.9e-08 Score=88.03 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=70.4
Q ss_pred CCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc--c--ccCCccccEEEEeHHHHHHHHH
Q 004077 407 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--Y--SYDAHYLPATAVLYDDAIKIHE 482 (775)
Q Consensus 407 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~~ 482 (775)
..|.+.++ +.+++|||+|++||.|.|.+|.++++++||.++|+||+...+.. . ..+...+|.++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46877655 35799999999999999999999999999999999998632211 1 1234679999999999999999
Q ss_pred HHhcCCCceEE
Q 004077 483 YIKSTNNPTAI 493 (775)
Q Consensus 483 ~~~~~~~~~~~ 493 (775)
.+.++.+++++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99998877654
No 54
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.66 E-value=9.4e-08 Score=88.64 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCCcCCCC--CCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc-c-----cCCccccEEEEeHHH
Q 004077 405 ETNQCLPGS--LTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-S-----YDAHYLPATAVLYDD 476 (775)
Q Consensus 405 ~~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~-~-----~~~~~~p~~~i~~~~ 476 (775)
....|.++. +...+++|||+||+|+.|.|.+|..+++++||.|+|++++....... . .....+|+++|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345688887 77889999999999999999999999999999999999987532111 1 134679999999999
Q ss_pred HHHHHHHHhcCCCceE
Q 004077 477 AIKIHEYIKSTNNPTA 492 (775)
Q Consensus 477 g~~l~~~~~~~~~~~~ 492 (775)
|..|++|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998766554
No 55
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.62 E-value=5.3e-08 Score=83.00 Aligned_cols=76 Identities=34% Similarity=0.486 Sum_probs=54.6
Q ss_pred eEEEEecCCCCCCcccchhhhhHHHHHHHhhCCc----hhhhcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEec
Q 004077 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNE----EEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPS 98 (775)
Q Consensus 25 ~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~ 98 (775)
+|||.|+++.. .......|.+++.+++.+. .....++.+.|+..||||+++++++++++|++ +|++|+||
T Consensus 1 ~YIV~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D 76 (82)
T PF05922_consen 1 RYIVVFKDDAS----AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD 76 (82)
T ss_dssp EEEEEE-TTST----HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCC----cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence 69999999873 2334566777776554321 23356899999999999999999999999999 99999999
Q ss_pred CCCccccc
Q 004077 99 HPEKYSLQ 106 (775)
Q Consensus 99 ~~~~~~~~ 106 (775)
+ .++++
T Consensus 77 ~--~v~l~ 82 (82)
T PF05922_consen 77 Q--VVSLH 82 (82)
T ss_dssp C--EEEE-
T ss_pred c--eEecC
Confidence 9 77653
No 56
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.62 E-value=1.6e-07 Score=88.41 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=68.7
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc------cCCccccEEEEeHHHHHH
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS------YDAHYLPATAVLYDDAIK 479 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 479 (775)
...|.+.. .+++|||+|++||.|+|.+|.++++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46788764 378999999999999999999999999999999999764321111 113589999999999999
Q ss_pred HHHHHhcCCCceE
Q 004077 480 IHEYIKSTNNPTA 492 (775)
Q Consensus 480 l~~~~~~~~~~~~ 492 (775)
|++++..+.++++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998877654
No 57
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.61 E-value=1.9e-07 Score=86.28 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCCcCCCCCC--CC----ceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc-c----------ccCCcccc
Q 004077 406 TNQCLPGSLT--PE----KVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-Y----------SYDAHYLP 468 (775)
Q Consensus 406 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~-~----------~~~~~~~p 468 (775)
...|.+.... +. ...++|+|++||+|.|.+|..+++++||.++|++|+.+.... . ......||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578776543 22 378899999999999999999999999999999998653211 0 11234799
Q ss_pred EEEEeHHHHHHHHHHHhcCCCceEE
Q 004077 469 ATAVLYDDAIKIHEYIKSTNNPTAI 493 (775)
Q Consensus 469 ~~~i~~~~g~~l~~~~~~~~~~~~~ 493 (775)
+++|+..+|+.|++.+..+..++++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988876654
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.59 E-value=1.8e-07 Score=87.21 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=61.6
Q ss_pred CCCCCceeceEEEEecCCcc-----hhhhhhHhhhcCceEEEEecCCCC-CC---cccc--CCccccEEEEeHHHHHHHH
Q 004077 413 SLTPEKVKGKIVLCMRGSGF-----KLSKGMEVKRAGGVGLILGNSPAN-GN---EYSY--DAHYLPATAVLYDDAIKIH 481 (775)
Q Consensus 413 ~~~~~~~~gkivl~~~g~~~-----~~~k~~~~~~~Ga~g~i~~n~~~~-~~---~~~~--~~~~~p~~~i~~~~g~~l~ 481 (775)
++...+++|||+|++||.|. |.+|.++++++||.++|+||+... +. .+.. ...+||+++|+.++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 45566899999999999999 999999999999999999999732 21 1111 1468999999999999999
Q ss_pred HHHhcC
Q 004077 482 EYIKST 487 (775)
Q Consensus 482 ~~~~~~ 487 (775)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 987554
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.56 E-value=3.6e-07 Score=84.67 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc-cccCCccccEEEEeHHHHHHHHH
Q 004077 404 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-YSYDAHYLPATAVLYDDAIKIHE 482 (775)
Q Consensus 404 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~ 482 (775)
.....|.+...+..+++|||+|++||.|.|.+|.++++++||.++|+||+...... ...+...+|...+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 34568998766666899999999999999999999999999999999998653221 1222334565555 999999999
Q ss_pred HHhcCCCceEE
Q 004077 483 YIKSTNNPTAI 493 (775)
Q Consensus 483 ~~~~~~~~~~~ 493 (775)
.+..+..++++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99888766554
No 60
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.54 E-value=1.1e-06 Score=79.81 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=61.6
Q ss_pred eEeecCCceEEEEEEEEecCCCCeEEEEEeeC--------CCCc-----------EEEEecceEEEccCCcEEEEEEEEE
Q 004077 678 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKP--------PMGV-----------SVKANPSILFFDHIGQKKSFTITVR 738 (775)
Q Consensus 678 ~~~~~~~~~~t~~~tv~n~~~~~~ty~~~~~~--------~~g~-----------~~~v~p~~~~~~~~~~~~~~~v~~~ 738 (775)
|++++.....+++++|+|.|+++.+|+++... ..|. .+...|..+++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 34566666789999999999999999998761 1111 45666778888 6799999999999
Q ss_pred ECcccccccCCCceEEEEEEEECC-c-cEEEeEEE
Q 004077 739 LGSETTRQGLTKQYVFGWYRWTDG-L-HLVRSPMA 771 (775)
Q Consensus 739 ~~~~~~~~~~~~~~~~g~~~~~~~-~-~~v~~P~~ 771 (775)
.+.. ....++.+++|+|.+++. . +.+++||+
T Consensus 80 ~p~~--~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSG--LDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GG--GHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhc--CCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9532 122557899999999963 4 58999996
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.54 E-value=3.5e-07 Score=83.17 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCC--ccc----cCCccccEEEEeHHHHH
Q 004077 405 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN--EYS----YDAHYLPATAVLYDDAI 478 (775)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~--~~~----~~~~~~p~~~i~~~~g~ 478 (775)
....|.+. +..+++|||+|++||+|+|.+|..+++++||.++|++|+..... ... .....+|+++|+.+++.
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679766 56889999999999999999999999999999999998765321 111 23458999999999999
Q ss_pred HHHHHHhcC
Q 004077 479 KIHEYIKST 487 (775)
Q Consensus 479 ~l~~~~~~~ 487 (775)
+|..++...
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999876554
No 62
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.45 E-value=8.1e-07 Score=85.06 Aligned_cols=84 Identities=24% Similarity=0.199 Sum_probs=69.3
Q ss_pred CCCcCCCCCCC---CceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCC-cccc-----CCccccEEEEeHHH
Q 004077 406 TNQCLPGSLTP---EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN-EYSY-----DAHYLPATAVLYDD 476 (775)
Q Consensus 406 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~-~~~~-----~~~~~p~~~i~~~~ 476 (775)
...|.+....+ .++.|+|+|++||+|+|.+|..+++++||.++|++|+..... .... ....||+++|+.++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798777644 789999999999999999999999999999999999865321 1111 24589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004077 477 AIKIHEYIKSTNN 489 (775)
Q Consensus 477 g~~l~~~~~~~~~ 489 (775)
|..|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987754
No 63
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.5e-06 Score=91.10 Aligned_cols=76 Identities=18% Similarity=0.081 Sum_probs=57.8
Q ss_pred EEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCC
Q 004077 559 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 559 ~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 634 (775)
.-..|||.++|+.||+.+|.++++|.++..++..+...++......................+|+|++|+..-+..
T Consensus 250 e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 250 EGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVSC 325 (431)
T ss_pred ccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhhh
Confidence 3456999999999999999999999999999999999999876543333222222233455799999998776653
No 64
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.5e-06 Score=97.08 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=56.4
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc-eEEEEccCCCC--CCCC--CccHHHHHHHHHH
Q 004077 249 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV-HVLSISIGTNQ--PFAF--NRDGIAIGALNAV 323 (775)
Q Consensus 249 ~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~--~~~~--~~~~~~~a~~~a~ 323 (775)
..-+||.|+|..|-.-. .....+..|+.+....=+ -+|-.||+... ...+ .-+.+......|.
T Consensus 288 s~A~AP~A~I~lvvap~------------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qas 355 (1174)
T COG4934 288 SHAMAPKANIDLVVAPN------------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQAS 355 (1174)
T ss_pred hhccCccCceEEEEcCC------------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhh
Confidence 45789999999987721 122223333333222111 33445666521 1122 2234455556788
Q ss_pred cCCcEEEEecCCCCCCCCC--------CCCCCCceEEecc
Q 004077 324 KHNILVACSAGNSGPAPSS--------LSNLAPWLITVGA 355 (775)
Q Consensus 324 ~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVgA 355 (775)
.+||.+++|+|.+|....+ .+..+|++++||-
T Consensus 356 aeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 356 AEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999999866543 2335699999996
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.19 E-value=1.9e-05 Score=73.25 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=63.1
Q ss_pred CCCCCceeceEEEEecCCc--chhhhhhHhhhcCceEEEEecCCCCCCcc-----c--cCCccccEEEEeHHHHHHHHHH
Q 004077 413 SLTPEKVKGKIVLCMRGSG--FKLSKGMEVKRAGGVGLILGNSPANGNEY-----S--YDAHYLPATAVLYDDAIKIHEY 483 (775)
Q Consensus 413 ~~~~~~~~gkivl~~~g~~--~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~~ 483 (775)
++...+++|||||++++.+ .+.+|.+++.++||.|+|++|+....... . .....+|++.|+.++|+.|.+.
T Consensus 37 d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 37 DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 4446679999999999999 88999999999999999999875442211 1 2245799999999999999999
Q ss_pred HhcCCCc
Q 004077 484 IKSTNNP 490 (775)
Q Consensus 484 ~~~~~~~ 490 (775)
++.+...
T Consensus 117 l~~g~~~ 123 (127)
T cd04819 117 AERNDTL 123 (127)
T ss_pred HhcCCce
Confidence 9876543
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.59 E-value=0.00023 Score=66.66 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCCCceeceEEEEecCCc------chhhh-------hhHhhhcCceEEEEecCCC-------CCCccc-cCCccccEEEE
Q 004077 414 LTPEKVKGKIVLCMRGSG------FKLSK-------GMEVKRAGGVGLILGNSPA-------NGNEYS-YDAHYLPATAV 472 (775)
Q Consensus 414 ~~~~~~~gkivl~~~g~~------~~~~k-------~~~~~~~Ga~g~i~~n~~~-------~~~~~~-~~~~~~p~~~i 472 (775)
+...+++|||||+.++.| .|..| .+.++++||.++|++|... .+.... .....+|++.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 346689999999999999 89888 6999999999999998532 221111 22357999999
Q ss_pred eHHHHHHHHHHHhcCCCceE
Q 004077 473 LYDDAIKIHEYIKSTNNPTA 492 (775)
Q Consensus 473 ~~~~g~~l~~~~~~~~~~~~ 492 (775)
+.+++..|...++.+..+++
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999988765544
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.04 E-value=0.0012 Score=64.39 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=57.2
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC------------------CCcc-----------c--c--
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN------------------GNEY-----------S--Y-- 462 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~------------------~~~~-----------~--~-- 462 (775)
..+++|||+|+++|.|.+.+|.++|+++||+|+|+|++..+ |..+ . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 46899999999999999999999999999999999998421 0000 0 0
Q ss_pred -CCccccEEEEeHHHHHHHHHHHhcC
Q 004077 463 -DAHYLPATAVLYDDAIKIHEYIKST 487 (775)
Q Consensus 463 -~~~~~p~~~i~~~~g~~l~~~~~~~ 487 (775)
....||++-|+..++..|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1246899999999999999987543
No 68
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=97.04 E-value=0.0018 Score=70.34 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=68.2
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC------CCccccCCccccEEEEeHHHHHHHHHHHhcCCC
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN------GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNN 489 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 489 (775)
..++++|++++.||.|.|.+|.+.++++||.++++.|+..+ ++.....+..||..+|++++++.+.+....+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 45789999999999999999999999999999999998442 222334467999999999999999998777777
Q ss_pred ceEEEEec
Q 004077 490 PTAIIKQA 497 (775)
Q Consensus 490 ~~~~i~~~ 497 (775)
+++.+...
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 77666543
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.53 E-value=0.0033 Score=58.94 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCc------------------chhhhhhHhhhcCceEEEEecCCC
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSG------------------FKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
...|...++...|++|||||+.|+.| .+..|.+.++++||.|+|++++..
T Consensus 33 a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 33 APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 35688889999999999999999877 477899999999999999999865
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.37 E-value=0.005 Score=57.38 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=43.5
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcc------------hhhhhhHhhhcCceEEEEecCCC
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGF------------KLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
...|...++...+++|||||+.++.|. +..|.+++.++||.|+|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 356888888889999999999998863 67899999999999999999854
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.24 E-value=0.0068 Score=57.56 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=43.3
Q ss_pred CCCcCCCCCCCCceeceEEEEecCC------------------cchhhhhhHhhhcCceEEEEecCCCC
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGS------------------GFKLSKGMEVKRAGGVGLILGNSPAN 456 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~k~~~~~~~Ga~g~i~~n~~~~ 456 (775)
...|...++...+++|||||+.|+. |.+..|..+++++||.|+|+|++...
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4557777888899999999998874 56788999999999999999998643
No 72
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.55 E-value=0.48 Score=41.80 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=60.3
Q ss_pred ceEEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEECCcc
Q 004077 685 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLH 764 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 764 (775)
...+.+++|+|.+..+..|++.........++++|..-.+ ++|++.++.|++... ...+.+ .+.|...-...
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~------~~~g~~-~~~l~i~~e~~ 91 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT------KPLGDY-EGSLVITTEGG 91 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC------CCCceE-EEEEEEEECCe
Confidence 4577888999999999999998654334556777766555 679999999999952 234444 68887775556
Q ss_pred EEEeEEEEEe
Q 004077 765 LVRSPMAVSF 774 (775)
Q Consensus 765 ~v~~P~~~~~ 774 (775)
.+.+|+-.+.
T Consensus 92 ~~~i~v~a~~ 101 (102)
T PF14874_consen 92 SFEIPVKAEV 101 (102)
T ss_pred EEEEEEEEEE
Confidence 7888876654
No 73
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.38 E-value=0.018 Score=54.04 Aligned_cols=39 Identities=28% Similarity=0.231 Sum_probs=36.8
Q ss_pred CceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC
Q 004077 417 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 417 ~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
.+++|||+|++.|...+-.|.+++++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999999999999999999999999854
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.25 E-value=0.12 Score=43.33 Aligned_cols=64 Identities=30% Similarity=0.296 Sum_probs=39.1
Q ss_pred ceEEEEEEEEecCCCC-eEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCce
Q 004077 685 GTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQY 752 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~-~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 752 (775)
.+.+++++|+|.|..+ ...++++..|.|-.+...|..+.--++|++++++++|+++ .....+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp----~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP----ADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-----TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC----CCCCCceE
Confidence 4678999999999754 5578888889999977778777544789999999999996 24444554
No 75
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.98 E-value=0.026 Score=52.25 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc------c----cCCccccEEEEe
Q 004077 404 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY------S----YDAHYLPATAVL 473 (775)
Q Consensus 404 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~------~----~~~~~~p~~~i~ 473 (775)
....+|.... +.-...+.++|++||+|+|..|..+++++||.++|+.++.....+. . .+...+|+.++-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 3456776532 3456788999999999999999999999999999998875443221 2 234678999998
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 004077 474 YDDAIKIHEYIKSTNNPTA 492 (775)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~ 492 (775)
..+|.-+..-+......-+
T Consensus 151 g~~Gy~ir~sL~r~~r~ha 169 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHA 169 (193)
T ss_pred ccceEEEehhHHHhCCccE
Confidence 8888766665554443333
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.84 E-value=0.028 Score=56.93 Aligned_cols=40 Identities=40% Similarity=0.499 Sum_probs=37.1
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
..+++|||||+++|.+.+..|.++++++||.|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5689999999999999889999999999999999999854
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.078 Score=56.79 Aligned_cols=81 Identities=19% Similarity=0.116 Sum_probs=63.0
Q ss_pred CCcCCCCC---CCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHHH
Q 004077 407 NQCLPGSL---TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIK 479 (775)
Q Consensus 407 ~~c~~~~~---~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 479 (775)
.+|.+... ........++|+.||+|+|.+|..+++++|..++|+||+........ .....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 24556778999999999999999999999999999999866553322 334688999999999999
Q ss_pred HHHHHhcC
Q 004077 480 IHEYIKST 487 (775)
Q Consensus 480 l~~~~~~~ 487 (775)
|.+|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99875433
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.60 E-value=4.9 Score=36.45 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=38.8
Q ss_pred EEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECc
Q 004077 687 VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 741 (775)
Q Consensus 687 ~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~ 741 (775)
-.+++.|.|....+.+|++++..++|+.+......+.+ ++|++..+.|.+..+.
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 46889999999999999999998889998555578888 6799999999999863
No 79
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=89.19 E-value=0.51 Score=45.28 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=35.3
Q ss_pred CCCCCCceeceEEEEecCCcch-------------------hhhhhHhhhcCceEEEEecCC
Q 004077 412 GSLTPEKVKGKIVLCMRGSGFK-------------------LSKGMEVKRAGGVGLILGNSP 454 (775)
Q Consensus 412 ~~~~~~~~~gkivl~~~g~~~~-------------------~~k~~~~~~~Ga~g~i~~n~~ 454 (775)
.++...|++||||++.++...+ ..|.+.+.+.||.|+|++++.
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 3667889999999999765533 248999999999999999874
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.47 E-value=4.8 Score=44.64 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=57.6
Q ss_pred ceEEEEEEEEecCCCCeE-EEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEE
Q 004077 685 GTVIVKRTVTNVGGSKSV-YFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWT 760 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~t-y~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 760 (775)
.+.++...+.|.|+.+.| -++++..|.|-++.|.|.++..-++|+.+++++|++++ ..+..+.| +-+|+-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP----~~a~aGdY-~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVP----EDAGAGDY-RITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcC----CCCCCCcE-EEEEEEe
Confidence 457888999999987755 47889999999999999977665789999999999997 46677777 4555554
No 81
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.71 E-value=1.3 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.0
Q ss_pred CCCCCceEEEEeecCCCCCCCCCC
Q 004077 137 ARYGQDVIVGLVDNGVWPESKSFS 160 (775)
Q Consensus 137 ~~~G~GV~VgVIDtGid~~Hp~f~ 160 (775)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 789999999999999999988774
No 82
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=78.94 E-value=32 Score=31.50 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=46.0
Q ss_pred CceEEEEEEEEecCCCCeEEEEEeeCC----CCc--------------------EEEEecceEEEccCCcEEEEEEEEEE
Q 004077 684 NGTVIVKRTVTNVGGSKSVYFFSAKPP----MGV--------------------SVKANPSILFFDHIGQKKSFTITVRL 739 (775)
Q Consensus 684 ~~~~t~~~tv~n~~~~~~ty~~~~~~~----~g~--------------------~~~v~p~~~~~~~~~~~~~~~v~~~~ 739 (775)
....+++++|+|.++++.+|.+.+... .|+ -++ .|..+++ +++++++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEE-CCCCEEEEEEEEEc
Confidence 457899999999999999999875421 111 011 2444777 67999999999988
Q ss_pred CcccccccCCCceEEEEEEEE
Q 004077 740 GSETTRQGLTKQYVFGWYRWT 760 (775)
Q Consensus 740 ~~~~~~~~~~~~~~~g~~~~~ 760 (775)
+. ..-.| .+-|-|.|+
T Consensus 104 P~----~~f~G-~ilGGi~~~ 119 (121)
T PF06030_consen 104 PK----KAFDG-IILGGIYFS 119 (121)
T ss_pred CC----CCcCC-EEEeeEEEE
Confidence 52 22233 334556654
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=72.08 E-value=39 Score=30.62 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=40.3
Q ss_pred EEEEEEEEecCCCCeEEEEEeeC---CC----CcEEEEecceEEEccCCcEEEEEEEEEE
Q 004077 687 VIVKRTVTNVGGSKSVYFFSAKP---PM----GVSVKANPSILFFDHIGQKKSFTITVRL 739 (775)
Q Consensus 687 ~t~~~tv~n~~~~~~ty~~~~~~---~~----g~~~~v~p~~~~~~~~~~~~~~~v~~~~ 739 (775)
.+.+++|+|.++.+..+.+.+.. .. .-.+.++|..+.+ ++|++++|.| +..
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 46789999999988888887764 11 1257789999999 5799999999 664
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=68.14 E-value=43 Score=37.44 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=43.3
Q ss_pred ceEEEEEEEEecCCCCeEEEEEee-CCCCcEEEEecc-----eEEEccCCcEEEEEEEEEEC
Q 004077 685 GTVIVKRTVTNVGGSKSVYFFSAK-PPMGVSVKANPS-----ILFFDHIGQKKSFTITVRLG 740 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~ty~~~~~-~~~g~~~~v~p~-----~~~~~~~~~~~~~~v~~~~~ 740 (775)
.+..+++++.|.|..+.+|.+++. .|+|-+....-. ++.+ .+||+++|+|.+..+
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps 344 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPS 344 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecC
Confidence 356788999999999999999998 787766553322 3445 579999999999986
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=65.08 E-value=39 Score=38.13 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=46.2
Q ss_pred eEEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECc
Q 004077 686 TVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 741 (775)
Q Consensus 686 ~~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~ 741 (775)
....++.+.|.+..+.+|+++++..++..+...+..+++ ++||+.++.|.+..++
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 356888999999999999999999889888765457777 6799999999988853
No 86
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=60.14 E-value=46 Score=29.21 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=39.5
Q ss_pred ceEEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEEC
Q 004077 685 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLG 740 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~ 740 (775)
......++|+|.++...-|++....|... .|.|..-.+ .++++.++.|++...
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 34677889999999999999998877554 567988767 579999999998873
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=50.14 E-value=1.4e+02 Score=27.95 Aligned_cols=67 Identities=7% Similarity=0.104 Sum_probs=46.8
Q ss_pred EEEEEEEEecCCCC-eEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEE
Q 004077 687 VIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWT 760 (775)
Q Consensus 687 ~t~~~tv~n~~~~~-~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 760 (775)
..+.+.+-|-.... ..-++.......+++--.|..+++ ++++.++++.+++++ .......||.|+|.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVs------StetGvIfG~I~Yd 138 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVS------STETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEE------eccCCEEEEEEEEe
Confidence 44555666766432 233444445567888888999998 578899999999984 23456889999985
No 88
>PLN03080 Probable beta-xylosidase; Provisional
Probab=48.28 E-value=95 Score=38.04 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=44.4
Q ss_pred eEEEEEEEEecCCCC--eEEEEEeeCCCCcEEEEecc-------eEEEccCCcEEEEEEEEEE-CcccccccCCCceE--
Q 004077 686 TVIVKRTVTNVGGSK--SVYFFSAKPPMGVSVKANPS-------ILFFDHIGQKKSFTITVRL-GSETTRQGLTKQYV-- 753 (775)
Q Consensus 686 ~~t~~~tv~n~~~~~--~ty~~~~~~~~g~~~~v~p~-------~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~-- 753 (775)
..+++++|||+|+.+ .+-.+.+..|... +. .|. ++.+ ++||++++++++.. .+-.. ....+.|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~-~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~-~d~~~~~~v~ 760 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PG-VPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSV-ANEEGKRVLP 760 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccC-CC-CcchhccCcEeEee-CCCCEEEEEEEeCchHHceE-EcCCCcEEEe
Confidence 478999999999754 4555556555321 11 122 2344 67999999988875 21110 11123342
Q ss_pred EEEEEEE--CCccEEEeE
Q 004077 754 FGWYRWT--DGLHLVRSP 769 (775)
Q Consensus 754 ~g~~~~~--~~~~~v~~P 769 (775)
.|...+. +..|.|+++
T Consensus 761 ~G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 761 LGDHVLMLGDLEHSLSIE 778 (779)
T ss_pred CccEEEEEeCCccceEEe
Confidence 3544433 446777664
No 89
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=46.92 E-value=6.7 Score=28.46 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=14.7
Q ss_pred CchhhhHHHHHHhhhcccccc
Q 004077 1 MTKIFIFFLFLLTLLASSAQK 21 (775)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (775)
||||++++++++.++.++++.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 899888777776655555554
No 90
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=46.68 E-value=55 Score=40.06 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=35.5
Q ss_pred ceEEEEEEEEecCCC--CeEEEEEeeCCCCcEEEEecc-------eEEEccCCcEEEEEEEEEEC
Q 004077 685 GTVIVKRTVTNVGGS--KSVYFFSAKPPMGVSVKANPS-------ILFFDHIGQKKSFTITVRLG 740 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~--~~ty~~~~~~~~g~~~~v~p~-------~~~~~~~~~~~~~~v~~~~~ 740 (775)
+..+++++|||+|+. ..+-.+.+..|.+- + ..|. ++.+ ++||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~-~~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-M-SRPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-C-CCHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 457899999999974 45556666665332 1 1232 2334 689999999988864
No 91
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=43.29 E-value=94 Score=22.83 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=24.2
Q ss_pred EEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEE
Q 004077 691 RTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 737 (775)
Q Consensus 691 ~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~ 737 (775)
.+++|.|+.+..-.- +...=|-.. ++...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~-v~tsCgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITD-VQTSCGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEE-eeEccCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 578999976654432 222223322 22222223 579998888864
No 92
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=41.72 E-value=14 Score=27.54 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=16.2
Q ss_pred CchhhhHHHHHHhhhccccccC
Q 004077 1 MTKIFIFFLFLLTLLASSAQKQ 22 (775)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (775)
|||.|++++||-++..+++.+.
T Consensus 3 lKKsllLlfflG~ISlSlCeeE 24 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLCEEE 24 (46)
T ss_pred chHHHHHHHHHHHcccchHHHh
Confidence 7888888877777766676543
No 93
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=41.66 E-value=2.4e+02 Score=24.69 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=35.8
Q ss_pred CCceEEEEEEEEecCCCC-eEEEE-----EeeCCCCcE---EEEecceEEEccCCcEEEEEEEEEEC
Q 004077 683 LNGTVIVKRTVTNVGGSK-SVYFF-----SAKPPMGVS---VKANPSILFFDHIGQKKSFTITVRLG 740 (775)
Q Consensus 683 ~~~~~t~~~tv~n~~~~~-~ty~~-----~~~~~~g~~---~~v~p~~~~~~~~~~~~~~~v~~~~~ 740 (775)
+....++.++++|..+.. .+-++ ++.. .|+. .......+++ +++++.++++++...
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 346789999999999877 55333 2333 3664 4555556666 579999999998874
No 94
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=40.51 E-value=17 Score=23.36 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=10.7
Q ss_pred CchhhhHHHHHHhhhc
Q 004077 1 MTKIFIFFLFLLTLLA 16 (775)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (775)
||||++.++.++.+..
T Consensus 7 mKkil~~l~a~~~Lag 22 (25)
T PF08139_consen 7 MKKILFPLLALFMLAG 22 (25)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4888877776665543
No 95
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=39.62 E-value=35 Score=36.15 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=50.2
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCH----------HHHHHHHHHHHhCCceEEEEccCCCCC-----------
Q 004077 249 ASGGAPLARLAIYKACWATPKASKAAGNTCFE----------ADMLAAIDDAIRDGVHVLSISIGTNQP----------- 307 (775)
Q Consensus 249 ~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~----------~~i~~ai~~a~~~gvdVIn~SlG~~~~----------- 307 (775)
++-+||-+.|-+-..+|...++... -++.. +.=+.-+++|+++|.+||+ |.|...-
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edl--l~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Di 213 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDL--LSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADI 213 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhh--hcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhc
Confidence 5678999998887777754221000 01111 1223456789999999996 6665311
Q ss_pred CCCCccHHHHHHHHH-H----cCCcEEEEec
Q 004077 308 FAFNRDGIAIGALNA-V----KHNILVACSA 333 (775)
Q Consensus 308 ~~~~~~~~~~a~~~a-~----~~Gi~vV~AA 333 (775)
.....||+++...+- + ..||.||+|+
T Consensus 214 s~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~ 244 (430)
T KOG2018|consen 214 SETEEDPLSRSVRRRLRKRGIEGGIPVVFSL 244 (430)
T ss_pred cccccCcHHHHHHHHHHHhccccCCceEEec
Confidence 123558888877653 3 3478999984
No 96
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=37.46 E-value=2.1e+02 Score=24.26 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=30.1
Q ss_pred EEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEE
Q 004077 687 VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 737 (775)
Q Consensus 687 ~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~ 737 (775)
..+.++++|.|....++++.-..- -.-.|.++++ ++|+++++.+.+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y----~~~~~~~~~v-~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAY----GGGGPWTYTV-AAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCc----CCCCCEEEEE-CCCCEEEEEEee
Confidence 478899999998888887764211 1113455666 467777766655
No 97
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=36.20 E-value=1.9e+02 Score=24.50 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=31.1
Q ss_pred CceEEEEEEEEecCCC-CeEEEEEeeCCCCcEEEEecceE-EEccCCcEEEEEEEEEE
Q 004077 684 NGTVIVKRTVTNVGGS-KSVYFFSAKPPMGVSVKANPSIL-FFDHIGQKKSFTITVRL 739 (775)
Q Consensus 684 ~~~~t~~~tv~n~~~~-~~ty~~~~~~~~g~~~~v~p~~~-~~~~~~~~~~~~v~~~~ 739 (775)
....+++++|+|.|.. ...+.+.+... |..+ .-..+ .+ ++|+++++++++..
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTP 71 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEe
Confidence 3578899999999975 35566655432 3333 11122 33 57888888888887
No 98
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=36.18 E-value=17 Score=16.64 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=4.4
Q ss_pred cccCCC
Q 004077 511 NFTSRG 516 (775)
Q Consensus 511 ~fSS~G 516 (775)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577876
No 99
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=36.03 E-value=2.4e+02 Score=24.05 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCeeEeecCCceEEEEEEEEecCCCCeEEEEEee-----CCCCcEEEEecceEEEccCCcEEEEEEEEEE
Q 004077 675 YPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAK-----PPMGVSVKANPSILFFDHIGQKKSFTITVRL 739 (775)
Q Consensus 675 ~ps~~~~~~~~~~t~~~tv~n~~~~~~ty~~~~~-----~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~ 739 (775)
-+++++.+-.+ +++++|...|+.....++.+. +-.|....-...+|+|.+....++|+|.+..
T Consensus 8 ~~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~d 75 (90)
T smart00237 8 QPVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIID 75 (90)
T ss_pred CCeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeC
Confidence 34556655444 455666666654444444443 2345566555778999543335666666554
No 100
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=35.07 E-value=1.8e+02 Score=24.58 Aligned_cols=52 Identities=25% Similarity=0.151 Sum_probs=26.7
Q ss_pred EEEEEEEEecCCCCe--------EEEEEeeCCCCcEEE---------EecceEEEccCCcEEEEEEEEEE
Q 004077 687 VIVKRTVTNVGGSKS--------VYFFSAKPPMGVSVK---------ANPSILFFDHIGQKKSFTITVRL 739 (775)
Q Consensus 687 ~t~~~tv~n~~~~~~--------ty~~~~~~~~g~~~~---------v~p~~~~~~~~~~~~~~~v~~~~ 739 (775)
..++++|+|.++.+. .|.+.+....|-.|- ---...++ ++||+++|+.++..
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECC
Confidence 457788899887543 344455544444432 22223445 57999999988766
No 101
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.08 E-value=3.5e+02 Score=26.62 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=34.4
Q ss_pred ceEEEEEEEEecCCCCeEEEEEeeC----CCCcEEEEecceEEE--ccCCcEEEEEEEEEE
Q 004077 685 GTVIVKRTVTNVGGSKSVYFFSAKP----PMGVSVKANPSILFF--DHIGQKKSFTITVRL 739 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~ty~~~~~~----~~g~~~~v~p~~~~~--~~~~~~~~~~v~~~~ 739 (775)
...+++.+|.|.|+ ..-|.+++.. ++.+++.--..+.++ =++|++.+..+++++
T Consensus 38 ~~v~V~~~iyN~G~-~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 38 EDVTVTYTIYNVGS-SAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRP 97 (181)
T ss_pred cEEEEEEEEEECCC-CeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEee
Confidence 46899999999997 4566777664 244444211112222 167888888888776
No 102
>PRK15019 CsdA-binding activator; Provisional
Probab=28.37 E-value=57 Score=30.98 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=28.0
Q ss_pred EEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 004077 559 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 592 (775)
Q Consensus 559 ~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~ 592 (775)
..+.|.| =|+.|-|++||+.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445665 68999999999999999999999876
No 103
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=28.02 E-value=36 Score=19.86 Aligned_cols=12 Identities=42% Similarity=0.741 Sum_probs=6.7
Q ss_pred CchhhhHHHHHH
Q 004077 1 MTKIFIFFLFLL 12 (775)
Q Consensus 1 m~~~~~~~~~~~ 12 (775)
|+|..++++.++
T Consensus 1 MMk~vIIlvvLL 12 (19)
T PF13956_consen 1 MMKLVIILVVLL 12 (19)
T ss_pred CceehHHHHHHH
Confidence 677666554433
No 104
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=28.02 E-value=61 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcc
Q 004077 575 AALLKAIHPDWSSAAIRSALMTTA 598 (775)
Q Consensus 575 aALl~q~~P~~s~~~ik~~L~~TA 598 (775)
+--+++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346788999999999999996653
No 105
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=27.76 E-value=1.7e+02 Score=31.92 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=27.8
Q ss_pred ceEEEEEEEEecCCCCeEEE----EEe--eCC----------C----CcEEEEecceEEEccCCcEEEEEEEEEE
Q 004077 685 GTVIVKRTVTNVGGSKSVYF----FSA--KPP----------M----GVSVKANPSILFFDHIGQKKSFTITVRL 739 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~ty~----~~~--~~~----------~----g~~~~v~p~~~~~~~~~~~~~~~v~~~~ 739 (775)
.+.+++++|||.|+++..-. +.+ ..| + .-.++|+|+.-. ++||+++++|+++-
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI--~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPI--APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B---TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCc--CCCceEEEEEEeeh
Confidence 57889999999998754321 111 111 1 112345555432 57999999998864
No 106
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=27.39 E-value=51 Score=22.57 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.5
Q ss_pred chhhHHHHHHHHH
Q 004077 566 MSCPHVAAAAALL 578 (775)
Q Consensus 566 mAaP~VAG~aALl 578 (775)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 4899999997743
No 107
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=27.06 E-value=62 Score=30.35 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=28.6
Q ss_pred cEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 004077 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 592 (775)
Q Consensus 558 y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~ 592 (775)
-..+.|.| =|+.|-|++||+.+.+-..+|++|.+
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 34455666 58999999999999999999999874
No 108
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=26.27 E-value=3.2e+02 Score=25.18 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=15.9
Q ss_pred eEEEccCCcEEEEEEEEEEC
Q 004077 721 ILFFDHIGQKKSFTITVRLG 740 (775)
Q Consensus 721 ~~~~~~~~~~~~~~v~~~~~ 740 (775)
+++++++|+.+.|.|.+.+.
T Consensus 74 sVTWtapgqf~~f~vs~~~~ 93 (124)
T cd08523 74 SVTWKAPSQEVRAKVSLRAE 93 (124)
T ss_pred EEEEcCCCceEEEEEEeecC
Confidence 47777788889999988764
No 109
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.66 E-value=1.9e+02 Score=31.12 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=50.1
Q ss_pred cCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCC----ceEEEEccCCCCCCC---CCccHHHHHHHHHHcC
Q 004077 253 APLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG----VHVLSISIGTNQPFA---FNRDGIAIGALNAVKH 325 (775)
Q Consensus 253 AP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~g----vdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~~ 325 (775)
.|.+++..|-+.-. | .....+|+.||+.+-+.+ +|||-+-=|+++..+ +.+..+. ....+.
T Consensus 39 ~~~~~~~~~p~~vQ---G------~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~va---rai~~~ 106 (319)
T PF02601_consen 39 NPIVEIILYPASVQ---G------EGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVA---RAIAAS 106 (319)
T ss_pred CCCcEEEEEecccc---c------cchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHH---HHHHhC
Confidence 45666666655433 3 357889999999998765 999999999954322 2222333 344567
Q ss_pred CcEEEEecCCCC
Q 004077 326 NILVACSAGNSG 337 (775)
Q Consensus 326 Gi~vV~AAGN~G 337 (775)
-+.|+.+-|=+-
T Consensus 107 ~~PvisaIGHe~ 118 (319)
T PF02601_consen 107 PIPVISAIGHET 118 (319)
T ss_pred CCCEEEecCCCC
Confidence 799999988764
No 110
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.38 E-value=2e+02 Score=23.49 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=20.4
Q ss_pred CceEEEEEEEEecCCCCeE-EEEEeeCCCCcEE
Q 004077 684 NGTVIVKRTVTNVGGSKSV-YFFSAKPPMGVSV 715 (775)
Q Consensus 684 ~~~~t~~~tv~n~~~~~~t-y~~~~~~~~g~~~ 715 (775)
....+++++|+|.|+.... ..+.-.-|.|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 3568899999999975533 3333334556554
No 111
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=23.76 E-value=78 Score=29.71 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=28.0
Q ss_pred EEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 004077 559 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 592 (775)
Q Consensus 559 ~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~ 592 (775)
..+.|.| =|+.|-|++||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445666 68999999999999999999999875
No 112
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=23.50 E-value=2.3e+02 Score=23.56 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEecceEEEccCCcEEEEEEEEEE
Q 004077 714 SVKANPSILFFDHIGQKKSFTITVRL 739 (775)
Q Consensus 714 ~~~v~p~~~~~~~~~~~~~~~v~~~~ 739 (775)
.+.+.|..+.+ ..|+++.|++++..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~ 28 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTP 28 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEEC
Confidence 46778888888 46889999988665
No 113
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=23.09 E-value=63 Score=26.56 Aligned_cols=17 Identities=12% Similarity=0.209 Sum_probs=12.1
Q ss_pred CchhhhHHHHHHhhhcc
Q 004077 1 MTKIFIFFLFLLTLLAS 17 (775)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (775)
||+++.+|+|++++...
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (92)
T TIGR02052 1 MKKLATLLALFVLTSLP 17 (92)
T ss_pred ChhHHHHHHHHHHhcch
Confidence 89998888776555443
No 114
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=23.07 E-value=4.9e+02 Score=22.61 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=24.2
Q ss_pred ceEEEEEEEEecCCCC-eEEEEEeeCCCCcEEE
Q 004077 685 GTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVK 716 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~-~ty~~~~~~~~g~~~~ 716 (775)
+.....++|+|.++.+ ..|++.+.-|.+.++.
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 3466689999999877 4699988877666654
No 115
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.97 E-value=77 Score=29.85 Aligned_cols=32 Identities=28% Similarity=0.184 Sum_probs=25.6
Q ss_pred EeeccCchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 004077 560 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRS 592 (775)
Q Consensus 560 ~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~ 592 (775)
.+.|=|= |++|.|++|++++.+-..||++|..
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444443 6899999999999999999998853
No 116
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=22.61 E-value=89 Score=28.75 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=26.3
Q ss_pred EeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 004077 560 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 593 (775)
Q Consensus 560 ~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~ 593 (775)
.+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556655 67999999999999999999998763
No 117
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.00 E-value=51 Score=29.74 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=13.4
Q ss_pred CchhhhHHHHHHhhhcccc
Q 004077 1 MTKIFIFFLFLLTLLASSA 19 (775)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (775)
|||++++++++++.+.++|
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 9999888866665555544
No 118
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=21.19 E-value=1.8e+02 Score=25.65 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=29.3
Q ss_pred ceEEEEEEEEecCCCC----eEEEEEee---------CCCCcEEEEe-cceEEEccCCcEEEEEEE
Q 004077 685 GTVIVKRTVTNVGGSK----SVYFFSAK---------PPMGVSVKAN-PSILFFDHIGQKKSFTIT 736 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~----~ty~~~~~---------~~~g~~~~v~-p~~~~~~~~~~~~~~~v~ 736 (775)
+..+++++|+|.|+.+ +-|++--. ..-|..+.+- -..+.| .+|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEEE
Confidence 3467899999999865 33443211 1124444431 124556 46888888774
No 119
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=20.83 E-value=91 Score=24.13 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred ccEEeeccCchhhHHHHHHH------HHHHhCCCCCHHHHHHHHH
Q 004077 557 KYTIFSGTSMSCPHVAAAAA------LLKAIHPDWSSAAIRSALM 595 (775)
Q Consensus 557 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~P~~s~~~ik~~L~ 595 (775)
+--.+.||=+..=.|....+ -+.+.+|.++.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 44466677777666665532 4566799999999999984
Done!