BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004080
(775 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/525 (42%), Positives = 311/525 (59%), Gaps = 15/525 (2%)
Query: 230 EAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGI 289
+A+ R + D+ V V P G A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 290 HVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRV 349
VD+ + V D + +P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 350 NG-HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPH 408
G + +EW+KW+ +GF REG++++++A+ DG R RP+ +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 409 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI 468
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED GI
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 469 LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL 528
L KH D +G+ RR+RR+ +SF T+ NY+Y F+W+ Y DG IE E K TG++ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 529 QPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVH 588
G + +APGL AP HQH F AR+DMA+D N+V E +V + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDG----FTNRVEEEDVVRQTMGPGNER 466
Query: 589 NNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGS 648
NAF + +L E +A+R+ + T R WII N + NR + GYKL + LA
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 649 EAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 708
+ + RRAAF +LWVT YA DE YP G+F NQ+ G GL +++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
Query: 709 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 753
+ FG+TH PR+EDWP+MPVD +GF L P GFF+ SP +DVP N S
Sbjct: 586 HTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPS 630
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/525 (41%), Positives = 310/525 (59%), Gaps = 15/525 (2%)
Query: 230 EAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGI 289
+A+ R + D+ V V P G A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 290 HVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRV 349
VD+ + V D + +P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 350 NG-HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPH 408
G + +EW+KW+ +GF REG++++++A+ DG R RP+ +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 409 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI 468
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED GI
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 469 LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL 528
L KH D +G+ RR+RR+ +SF T+ N +Y F+W+ Y DG IE E K TG++ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 529 QPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVH 588
G + +APGL AP HQH F AR+DMA+D N+V E +V + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDG----FTNRVEEEDVVRQTMGPGNER 466
Query: 589 NNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGS 648
NAF + +L E +A+R+ + T R WII N + NR + GYKL + LA
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 649 EAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 708
+ + RRAAF +LWVT YA DE YP G+F NQ+ G GL +++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
Query: 709 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 753
+ FG+TH PR+EDWP+MPVD +GF L P GFF+ SP +DVP N S
Sbjct: 586 HTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPS 630
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/525 (41%), Positives = 310/525 (59%), Gaps = 15/525 (2%)
Query: 230 EAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGI 289
+A+ R + D+ V V P G A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 118 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 173
Query: 290 HVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRV 349
VD+ + V D + +P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 174 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 230
Query: 350 NG-HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPH 408
G + +EW+KW+ +GF REG++++++A+ DG R RP+ +R S EMVVPYGDP+
Sbjct: 231 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 289
Query: 409 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI 468
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED GI
Sbjct: 290 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 349
Query: 469 LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL 528
L KH D +G+ RR+RR+ +SF T+ N +Y F+W+ Y DG IE E K TG++ A
Sbjct: 350 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 409
Query: 529 QPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVH 588
G + +APGL AP HQH F AR+DMA+D N+V E +V + G N
Sbjct: 410 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDG----FTNRVEEEDVVRQTMGPGNER 464
Query: 589 NNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGS 648
NAF + +L E +A+R+ + T R WII N + NR + GYKL + LA
Sbjct: 465 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 524
Query: 649 EAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 708
+ + RRAAF +LWVT YA DE YP G+F NQ+ G GL +++ Q+R ++ DIV+W
Sbjct: 525 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 583
Query: 709 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 753
+ FG+TH PR+EDWP+MPVD +GF L P GFF+ SP +DVP N S
Sbjct: 584 HTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPS 628
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/523 (41%), Positives = 309/523 (59%), Gaps = 15/523 (2%)
Query: 230 EAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGI 289
+A+ R + D+ V V P G A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 290 HVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRV 349
VD+ + V D + +P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 350 NG-HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPH 408
G + +EW+KW+ +GF REG++++++A+ DG R RP+ +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 409 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI 468
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED GI
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 469 LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL 528
L KH D +G+ RR+RR+ +SF T+ N +Y F+W+ Y DG IE E K TG++ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 529 QPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVH 588
G + +APGL AP HQH F AR+DMA+D N+V E +V + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDG----FTNRVEEEDVVRQTMGPGNER 466
Query: 589 NNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGS 648
NAF + +L E +A+R+ + T R WII N + NR + GYKL + LA
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 649 EAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 708
+ + RRAAF +LWVT YA DE YP G+F NQ+ G GL +++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
Query: 709 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPN 751
+ FG+TH PR+EDWP+MPVD +GF L P GFF+ SP +DVP N
Sbjct: 586 HTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPAN 628
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/525 (41%), Positives = 310/525 (59%), Gaps = 15/525 (2%)
Query: 230 EAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGI 289
+A+ R + D+ V V P G A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 290 HVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRV 349
VD+ + V D + +P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 350 NG-HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPH 408
G + +EW+KW+ +GF REG++++++A+ DG R RP+ +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 409 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI 468
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED GI
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 469 LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL 528
L KH D +G+ RR+RR+ +SF T+ NY+Y F+W+ Y DG IE E K TG++ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 529 QPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVH 588
G + +APGL AP HQ F AR+DMA+D N+V E +V + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQAIFSARLDMAIDG----FTNRVEEEDVVRQTMGPGNER 466
Query: 589 NNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGS 648
NAF + +L E +A+R+ + T R WII N + NR + GYKL + LA
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 649 EAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 708
+ + RRAAF +LWVT YA DE YP G+F NQ+ G GL +++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
Query: 709 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 753
+ FG+TH PR+EDWP+MPVD +GF L P GFF+ SP +DVP N S
Sbjct: 586 HTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPS 630
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/525 (41%), Positives = 309/525 (58%), Gaps = 15/525 (2%)
Query: 230 EAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGI 289
+A+ R + D+ V V P G A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 290 HVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRV 349
VD+ + V D + +P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 350 NG-HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPH 408
G + +EW+KW+ +GF REG++++++A+ DG R RP+ +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 409 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI 468
+N F GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED GI
Sbjct: 292 SWQNYFKTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 469 LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL 528
L KH D +G+ RR+RR+ +SF T+ N +Y F+W+ Y DG IE E K TG++ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 529 QPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVH 588
G + +APGL AP HQH F AR+DMA+D N+V E +V + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDG----FTNRVEEEDVVRQTMGPGNER 466
Query: 589 NNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGS 648
NAF + +L E +A+R+ + T R WII N + NR + GYKL + LA
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 649 EAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 708
+ + RRAAF +LWVT YA DE YP G+F NQ+ G GL +++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
Query: 709 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 753
+ FG+TH PR+EDWP+MPVD +GF L P GFF+ SP +DVP N S
Sbjct: 586 HTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPS 630
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/525 (41%), Positives = 309/525 (58%), Gaps = 15/525 (2%)
Query: 230 EAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGI 289
+A+ R + D+ V V P G A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 290 HVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRV 349
VD+ + V D + +P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 350 NG-HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPH 408
G + +EW+KW+ +GF REG++++++A+ DG R RP+ +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 409 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI 468
+N F GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED GI
Sbjct: 292 SWQNYFATGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 469 LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL 528
L KH D +G+ RR+RR+ +SF T+ N +Y F+W+ Y DG IE E K TG++ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 529 QPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVH 588
G + +APGL AP HQH F AR+DMA+D N+V E +V + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDG----FTNRVEEEDVVRQTMGPGNER 466
Query: 589 NNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGS 648
NAF + +L E +A+R+ + T R WII N + NR + GYKL + LA
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 649 EAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 708
+ + RRAAF +LWVT YA DE YP G+F NQ+ G GL +++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
Query: 709 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 753
+ FG+TH PR+EDWP+MPVD +GF L P GFF+ SP +DVP N S
Sbjct: 586 HTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPS 630
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/525 (41%), Positives = 309/525 (58%), Gaps = 15/525 (2%)
Query: 230 EAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGI 289
+A+ R + D+ V V P G A+ RR+ + L F + D P ++ +A PV+G+
Sbjct: 120 KALAARNL-DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQ---DFPEDSAWAHPVDGL 175
Query: 290 HVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRV 349
VD+ + V D + +P NYT E G + R+ KP+ I QPEGPSF V
Sbjct: 176 VAYVDVVSKEVTRVIDTGVFPVPAEHG--NYTDPELTGPL-RTTQKPISITQPEGPSFTV 232
Query: 350 NG-HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPH 408
G + +EW+KW+ +GF REG++++++A+ DG R RP+ +R S EMVVPYGDP+
Sbjct: 233 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAEMVVPYGDPSPIR 291
Query: 409 YRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI 468
+N FD GE +G+ A+SL+ GCDCLG I Y ++ G I N +C+HEED GI
Sbjct: 292 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGI 351
Query: 469 LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL 528
L KH D +G+ RR+RR+ +SF T+ N +Y F+W+ Y DG IE E K TG++ A
Sbjct: 352 LAKHSDLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAF 411
Query: 529 QPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVH 588
G + +APGL AP HQH F AR+DMA+D N+V E +V + G N
Sbjct: 412 PEGGSDNI-SQLAPGLGAPFHQHIFSARLDMAIDG----FTNRVEEEDVVRQTMGPGNER 466
Query: 589 NNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGS 648
NAF + +L E +A+R+ + T R WII N + NR + GYKL + LA
Sbjct: 467 GNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADP 526
Query: 649 EAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLW 708
+ + RRAAF +LWVT YA DE YP G+F NQ+ G GL +++ Q+R ++ DIV+W
Sbjct: 527 GSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVW 585
Query: 709 YVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 753
+ FG+T PR+EDWP+MPVD +GF L P GFF+ SP +DVP N S
Sbjct: 586 HTFGLTAFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPS 630
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 342 bits (878), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 226/690 (32%), Positives = 348/690 (50%), Gaps = 65/690 (9%)
Query: 79 AQTSHPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPP 138
A+ +HPLDPLS AEI ++ F V EP ++ AY
Sbjct: 3 ARPAHPLDPLSTAEIKAATNTVKSYFAGKKIS----FNTVTLREPARK------AY---- 48
Query: 139 FQPSLIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVI 198
+ + +GGP LPPR A V+ +V+L+ + VI
Sbjct: 49 ----IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVI 88
Query: 199 SSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI--EDMDLVMVDPWCVGYHSDA 256
++ + VQP + + E V+++ P E GI +M V DPW +GY +
Sbjct: 89 ETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DER 147
Query: 257 DAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVL-VDMQNMVVIEFEDR-------KL 308
+RL + L++ R++ D ++ Y+ P++ ++ + + ++ I+ +R K
Sbjct: 148 WGTGKRLQQALVYYRSDED---DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKH 204
Query: 309 VHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPR 368
+ P + + G R + P+ + QPEG SF++ G+ +EW + F IGF R
Sbjct: 205 ANFYPKHMIE-------KVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYR 257
Query: 369 EGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSL 428
EG+++ V+Y D RP+ HR+S EM+VPYG P PH RK+A D GE G G + L
Sbjct: 258 EGIVLSDVSYNDHGN-VRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPL 316
Query: 429 KKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAE--VRRSR 486
GCDC G I Y DAHF++ AG T++N VC+HEED G+L+KH D+R A V R+
Sbjct: 317 SLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRAT 376
Query: 487 RLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL-QPGEVRKYGTIIAPGLY 545
+L VS I T ANYEY +W F QDG I +++LTGIL+ L E +GT + P +
Sbjct: 377 KLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVN 436
Query: 546 APVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQA 605
A HQH F R+D +D G + + N++ NAFY+E+ K+ +
Sbjct: 437 AHNHQHLFSLRIDPRIDGD-GNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDS 495
Query: 606 MRDCNPLTARHWIIRNTRTVN-RTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNL 663
+ + T R W I N VN +G+ YKLV + C PL E V +RA + H++
Sbjct: 496 LTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHSV 554
Query: 664 WVTPYAHDEMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETDIVLWYVFGVTHIPRLED 721
V PY + +YP G+ Q G G+ W+ + + +++ TDI+ ++ FG+TH P ED
Sbjct: 555 NVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPED 614
Query: 722 WPVMPVDRIGFMLMPHGFFNCSPAVDVPPN 751
+P+MP + I ML P FF +P +D+ P+
Sbjct: 615 FPLMPAEPITLMLRPRHFFTENPGLDIQPS 644
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 340 bits (873), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 225/686 (32%), Positives = 345/686 (50%), Gaps = 65/686 (9%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPS 142
HPLDPLS AEI ++ F V EP ++ AY
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAGKKIS----FNTVTLREPARK------AY-------- 64
Query: 143 LIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202
+ + +GGP LPPR A V+ +V+L+ + VI ++
Sbjct: 65 IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIETRA 108
Query: 203 VPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI--EDMDLVMVDPWCVGYHSDADAPS 260
+ VQP + + E V+++ P E GI +M V DPW +GY +
Sbjct: 109 LETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERWGTG 167
Query: 261 RRLAKPLIFCRTESDCPIENGYARPVEGIHVL-VDMQNMVVIEFEDR-------KLVHLP 312
+RL + L++ R++ D ++ Y+ P++ ++ + + ++ I+ +R K +
Sbjct: 168 KRLQQALVYYRSDED---DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFY 224
Query: 313 PADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLI 372
P + + G R + P+ + QPEG SF++ G+ +EW + F IGF REG++
Sbjct: 225 PKHMIE-------KVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIV 277
Query: 373 IYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGC 432
+ V+Y D RP+ HR+S EM+VPYG P PH RK+A D GE G G + L GC
Sbjct: 278 LSDVSYNDHG-NVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGC 336
Query: 433 DCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAE--VRRSRRLSV 490
DC G I Y DAHF++ AG T++N VC+HEED G+L+KH D+R A V R+ +L V
Sbjct: 337 DCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVV 396
Query: 491 SFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL-QPGEVRKYGTIIAPGLYAPVH 549
S I T ANYEY +W F QDG I +++LTGIL+ L E +GT + P + A H
Sbjct: 397 SQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNH 456
Query: 550 QHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDC 609
QH F R+D +D G + + N++ NAFY+E+ K+ ++ +
Sbjct: 457 QHLFSLRIDPRIDGD-GNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNY 515
Query: 610 NPLTARHWIIRNTRTVN-RTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNLWVTP 667
T R W I N VN +G+ YKLV + C PL E V +RA + H++ V P
Sbjct: 516 ESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHSVNVVP 574
Query: 668 YAHDEMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETDIVLWYVFGVTHIPRLEDWPVM 725
Y + +YP G+ Q G G+ W+ + + +++ TDI+ ++ FG+TH P ED+P+M
Sbjct: 575 YKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLM 634
Query: 726 PVDRIGFMLMPHGFFNCSPAVDVPPN 751
P + I ML P FF +P +D+ P+
Sbjct: 635 PAEPITLMLRPRHFFTENPGLDIQPS 660
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 339 bits (870), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 225/690 (32%), Positives = 347/690 (50%), Gaps = 65/690 (9%)
Query: 79 AQTSHPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPP 138
A+ +HPLDPLS AEI ++ F V EP ++ AY
Sbjct: 2 ARPAHPLDPLSTAEIKAATNTVKSYFAGKKIS----FNTVTLREPARK------AY---- 47
Query: 139 FQPSLIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVI 198
+ + +GGP LPPR A V+ +V+L+ + VI
Sbjct: 48 ----IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVI 87
Query: 199 SSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI--EDMDLVMVDPWCVGYHSDA 256
++ + VQP + + E V+++ P E GI +M V DPW +GY +
Sbjct: 88 ETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DER 146
Query: 257 DAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVL-VDMQNMVVIEFEDR-------KL 308
+RL + L++ R++ D ++ Y+ P++ ++ + + ++ I+ +R K
Sbjct: 147 WGTGKRLQQALVYYRSDED---DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKH 203
Query: 309 VHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPR 368
+ P + + G R + P+ + QPEG SF++ G+ +EW + F IGF R
Sbjct: 204 ANFYPKHMIE-------KVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYR 256
Query: 369 EGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSL 428
EG+++ V+Y D RP+ HR+S EM+VPYG P PH RK+A D GE G G + L
Sbjct: 257 EGIVLSDVSYNDHGN-VRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPL 315
Query: 429 KKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAE--VRRSR 486
GCDC G I Y DAHF++ AG T++N VC+HEED G+L+KH D+R A V R+
Sbjct: 316 SLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRAT 375
Query: 487 RLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL-QPGEVRKYGTIIAPGLY 545
+L VS I T AN EY +W F QDG I +++LTGIL+ L E +GT + P +
Sbjct: 376 KLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVN 435
Query: 546 APVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQA 605
A HQH F R+D +D G + + N++ NAFY+E+ K+ +
Sbjct: 436 AHNHQHLFSLRIDPRIDGD-GNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDS 494
Query: 606 MRDCNPLTARHWIIRNTRTVN-RTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNL 663
+ + T R W I N VN +G+ YKLV + C PL E V +RA + H++
Sbjct: 495 LTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHSV 553
Query: 664 WVTPYAHDEMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETDIVLWYVFGVTHIPRLED 721
V PY + +YP G+ Q G G+ W+ + + +++ TDI+ ++ FG+TH P ED
Sbjct: 554 NVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPED 613
Query: 722 WPVMPVDRIGFMLMPHGFFNCSPAVDVPPN 751
+P+MP + I ML P FF +P +D+ P+
Sbjct: 614 FPLMPAEPITLMLRPRHFFTENPGLDIQPS 643
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 226/682 (33%), Positives = 342/682 (50%), Gaps = 57/682 (8%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPS 142
HPLDPLS AEI ++ F V EP ++ AY
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAGKKIS----FNTVTLREPARK------AY-------- 64
Query: 143 LIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202
+ + +GGP LPPR A V+ +V+L+ + VI ++
Sbjct: 65 IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIETRA 108
Query: 203 VPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI--EDMDLVMVDPWCVGYHSDADAPS 260
+ VQP + + E V+++ P E GI +M V DPW +GY +
Sbjct: 109 LETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERWGTG 167
Query: 261 RRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFE----DRKLVHLPPADP 316
+RL + L++ R++ D ++ Y+ P++ +VD + VI + RK+ A+
Sbjct: 168 KRLQQALVYYRSDED---DSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANF 223
Query: 317 LRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSV 376
+ + G R + P+ + QPEG SF++ G+ +EW + F IGF REG+++ V
Sbjct: 224 YPKHMIEKV--GAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDV 281
Query: 377 AYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLG 436
+Y D RP+ HR+S EM+VP G P PH RK+A D GE G G + L GCDC G
Sbjct: 282 SYNDHG-NVRPIFHRISLSEMIVPAGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKG 340
Query: 437 YIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAE--VRRSRRLSVSFIC 494
I Y DAHF++ AG T++N VC+HEED G+L+KH D+R A V R+ +L VS I
Sbjct: 341 VIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIF 400
Query: 495 TVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL-QPGEVRKYGTIIAPGLYAPVHQHFF 553
T AN EY +W F QDG I +++LTGIL+ L E +GT + P + A HQH F
Sbjct: 401 TAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLF 460
Query: 554 VARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLT 613
R+D +D G + + N++ NAFY+E+ K+ ++ + T
Sbjct: 461 SLRIDPRIDGD-GNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT 519
Query: 614 ARHWIIRNTRTVN-RTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNLWVTPYAHD 671
R W I N VN +G+ YKLV + C PL E V +RA + H++ V PY +
Sbjct: 520 GRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDN 578
Query: 672 EMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDR 729
+YP G+ Q G G+ W+ + + +++ TDI+ ++ FG+TH P ED+P+MP +
Sbjct: 579 RLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEP 638
Query: 730 IGFMLMPHGFFNCSPAVDVPPN 751
I ML P FF +P +D+ P+
Sbjct: 639 ITLMLRPRHFFTENPGLDIQPS 660
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 332 bits (850), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 222/684 (32%), Positives = 342/684 (50%), Gaps = 65/684 (9%)
Query: 85 LDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLI 144
LDPLS AEI ++ F V EP ++ AY +
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGKKIS----FNTVTLREPARK------AY--------IQ 54
Query: 145 PRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVP 204
+ +GGP LPPR A V+ +V+L+ + VI ++ +
Sbjct: 55 WKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIETRALE 98
Query: 205 DVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI--EDMDLVMVDPWCVGYHSDADAPSRR 262
VQP + + E V+++ P E GI +M V DPW +GY + +R
Sbjct: 99 TVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERWGTGKR 157
Query: 263 LAKPLIFCRTESDCPIENGYARPVEGIHVL-VDMQNMVVIEFEDR-------KLVHLPPA 314
L + L++ R++ D ++ Y+ P++ ++ + + ++ I+ +R K + P
Sbjct: 158 LQQALVYYRSDED---DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPK 214
Query: 315 DPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIY 374
+ + G R + P+ + QPEG SF++ G+ +EW + F IGF REG+++
Sbjct: 215 HMIE-------KVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLS 267
Query: 375 SVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDC 434
V+Y D RP+ HR+S EM+VPYG P PH RK+A D GE G G + L GCDC
Sbjct: 268 DVSYNDHGN-VRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDC 326
Query: 435 LGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAE--VRRSRRLSVSF 492
G I Y DAHF++ AG T++N VC+HEED G+L+KH D+R A V R+ +L VS
Sbjct: 327 KGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQ 386
Query: 493 ICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL-QPGEVRKYGTIIAPGLYAPVHQH 551
I T AN EY +W F QDG I +++LTGIL+ L E +GT + P + A HQH
Sbjct: 387 IFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQH 446
Query: 552 FFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNP 611
F R+D +D G + + N++ NAFY+E+ K+ ++ +
Sbjct: 447 LFSLRIDPRIDGD-GNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES 505
Query: 612 LTARHWIIRNTRTVN-RTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNLWVTPYA 669
T R W I N VN +G+ YKLV + C PL E V +RA + H++ V PY
Sbjct: 506 ATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHSVNVVPYK 564
Query: 670 HDEMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPV 727
+ +YP G+ Q G G+ W+ + + +++ TDI+ ++ FG+TH P ED+P+MP
Sbjct: 565 DNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPA 624
Query: 728 DRIGFMLMPHGFFNCSPAVDVPPN 751
+ I ML P FF +P +D+ P+
Sbjct: 625 EPITLMLRPRHFFTENPGLDIQPS 648
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 329 bits (844), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 221/684 (32%), Positives = 341/684 (49%), Gaps = 65/684 (9%)
Query: 85 LDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLI 144
LDPLS AEI ++ F V EP ++ AY +
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGKKIS----FNTVTLREPARK------AY--------IQ 54
Query: 145 PRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVP 204
+ +GGP LPPR A V+ +V+L+ + VI ++ +
Sbjct: 55 WKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVIETRALE 98
Query: 205 DVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI--EDMDLVMVDPWCVGYHSDADAPSRR 262
VQP + + E V+++ P E GI +M V DPW +GY + +R
Sbjct: 99 TVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DERWGTGKR 157
Query: 263 LAKPLIFCRTESDCPIENGYARPVEGIHVL-VDMQNMVVIEFEDR-------KLVHLPPA 314
L + L++ R++ D ++ Y+ P++ ++ + + ++ I+ +R K + P
Sbjct: 158 LQQALVYYRSDED---DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPK 214
Query: 315 DPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIY 374
+ + G R + P+ + QPEG SF++ G+ +EW + F IGF REG+++
Sbjct: 215 HMIE-------KVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLS 267
Query: 375 SVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDC 434
V+Y D RP+ HR+S EM+VPYG P PH RK+A D GE G G + L GCDC
Sbjct: 268 DVSYNDHGN-VRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDC 326
Query: 435 LGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAE--VRRSRRLSVSF 492
G I Y DAHF++ AG T++N VC+HEED G+L+KH D+R A V R+ +L VS
Sbjct: 327 KGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQ 386
Query: 493 ICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGAL-QPGEVRKYGTIIAPGLYAPVHQH 551
I T AN EY +W F QDG I +++LTGIL+ L E +GT + P + A HQH
Sbjct: 387 IFTAANXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQH 446
Query: 552 FFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNP 611
F R+D +D G + + N++ NAFY+E+ K+ ++ +
Sbjct: 447 LFSLRIDPRIDGD-GNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES 505
Query: 612 LTARHWIIRNTRTVN-RTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNLWVTPYA 669
T R W I N VN +G+ YKLV + C PL E V +RA + H++ V PY
Sbjct: 506 ATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHSVNVVPYK 564
Query: 670 HDEMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPV 727
+ +YP G+ Q G G+ W+ + + +++ TDI+ ++ FG+TH P ED+P+ P
Sbjct: 565 DNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXPA 624
Query: 728 DRIGFMLMPHGFFNCSPAVDVPPN 751
+ I ML P FF +P +D+ P+
Sbjct: 625 EPITLMLRPRHFFTENPGLDIQPS 648
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 328 bits (842), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 224/692 (32%), Positives = 347/692 (50%), Gaps = 67/692 (9%)
Query: 79 AQTSHPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPP 138
A+ +HPLDPLS AEI ++ F V EP ++ AY
Sbjct: 2 ARPAHPLDPLSTAEIKAATNTVKSYFAGKKIS----FNTVTLREPARK------AY---- 47
Query: 139 FQPSLIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVI 198
+ + +GGP LPPR A V+ +V+L+ + VI
Sbjct: 48 ----IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVI 87
Query: 199 SSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI--EDMDLVMVDPWCVGYHSDA 256
++ + VQP + + E V+++ P E GI +M V DPW +GY +
Sbjct: 88 ETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DER 146
Query: 257 DAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVL-VDMQNMVVIEFEDR-------KL 308
+RL + L++ R++ D ++ Y+ P++ ++ + + ++ I+ +R K
Sbjct: 147 WGTGKRLQQALVYYRSDED---DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKH 203
Query: 309 VHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPR 368
+ P + + G R + P+ + QPEG SF++ G+ +EW + F IGF R
Sbjct: 204 ANFYPKHMIE-------KVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYR 256
Query: 369 EGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSL 428
EG+++ V+Y D RP+ HR+S EM+VP+G P PH RK+A D GE G G + L
Sbjct: 257 EGIVLSDVSYNDHGN-VRPIFHRISLSEMIVPFGSPEFPHQRKHALDIGEYGAGYMTNPL 315
Query: 429 KKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAE--VRRSR 486
GCDC G I Y DAHF++ AG T++N VC+HEED G+L+KH D+R A V R+
Sbjct: 316 SLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRAT 375
Query: 487 RLSVSFICTVAN-YEYAFFWHFYQDGKIEAEVKLTGILSLGAL-QPGEVRKYGTIIAPGL 544
+L VS I T AN EY +W F QDG I +++LTGIL+ L E +GT + P +
Sbjct: 376 KLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNV 435
Query: 545 YAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQ 604
A HQH F R+D +D G + + N++ NAFY+E+ K+
Sbjct: 436 NAHNHQHLFSLRIDPRIDGD-GNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKD 494
Query: 605 AMRDCNPLTARHWIIRNTRTVN-RTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHN 662
++ + T R W I N VN +G+ YKLV + C PL E V +RA + H+
Sbjct: 495 SLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHS 553
Query: 663 LWVTPYAHDEMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETDIVLWYVFGVTHIPRLE 720
+ V PY + +YP G+ Q G G+ W+ + + +++ TDI+ ++ FG+TH P E
Sbjct: 554 VNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPE 613
Query: 721 DWPV-MPVDRIGFMLMPHGFFNCSPAVDVPPN 751
D+P+ MP + I ML P FF +P +D+ P+
Sbjct: 614 DFPLXMPAEPITLMLRPRHFFTENPGLDIQPS 645
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 328 bits (841), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 224/692 (32%), Positives = 347/692 (50%), Gaps = 67/692 (9%)
Query: 79 AQTSHPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPP 138
A+ +HPLDPLS AEI ++ F V EP ++ AY
Sbjct: 5 ARPAHPLDPLSTAEIKAATNTVKSYFAGKKIS----FNTVTLREPARK------AY---- 50
Query: 139 FQPSLIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVI 198
+ + +GGP LPPR A V+ +V+L+ + VI
Sbjct: 51 ----IQWKEQGGP-----LPPRLAYYVILEAGKPGVKEGLVDLASL-----------SVI 90
Query: 199 SSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI--EDMDLVMVDPWCVGYHSDA 256
++ + VQP + + E V+++ P E GI +M V DPW +GY +
Sbjct: 91 ETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGY-DER 149
Query: 257 DAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVL-VDMQNMVVIEFEDR-------KL 308
+RL + L++ R++ D ++ Y+ P++ ++ + + ++ I+ +R K
Sbjct: 150 WGTGKRLQQALVYYRSDED---DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKH 206
Query: 309 VHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPR 368
+ P + + G R + P+ + QPEG SF++ G+ +EW + F IGF R
Sbjct: 207 ANFYPKHMIE-------KVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYR 259
Query: 369 EGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSL 428
EG+++ V+Y D RP+ HR+S EM+VP+G P PH RK+A D GE G G + L
Sbjct: 260 EGIVLSDVSYNDHGN-VRPIFHRISLSEMIVPFGSPEFPHQRKHALDIGEYGAGYMTNPL 318
Query: 429 KKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAE--VRRSR 486
GCDC G I Y DAHF++ AG T++N VC+HEED G+L+KH D+R A V R+
Sbjct: 319 SLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRAT 378
Query: 487 RLSVSFICTVAN-YEYAFFWHFYQDGKIEAEVKLTGILSLGAL-QPGEVRKYGTIIAPGL 544
+L VS I T AN EY +W F QDG I +++LTGIL+ L E +GT + P +
Sbjct: 379 KLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNV 438
Query: 545 YAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQ 604
A HQH F R+D +D G + + N++ NAFY+E+ K+
Sbjct: 439 NAHNHQHLFSLRIDPRIDGD-GNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKD 497
Query: 605 AMRDCNPLTARHWIIRNTRTVN-RTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHN 662
++ + T R W I N VN +G+ YKLV + C PL E V +RA + H+
Sbjct: 498 SLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV-STQCPPLLAKEGSLVAKRAPWASHS 556
Query: 663 LWVTPYAHDEMYPGGEFPNQNPRVG-EGLATWV-EQNRSLEETDIVLWYVFGVTHIPRLE 720
+ V PY + +YP G+ Q G G+ W+ + + +++ TDI+ ++ FG+TH P E
Sbjct: 557 VNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPE 616
Query: 721 DWPV-MPVDRIGFMLMPHGFFNCSPAVDVPPN 751
D+P+ MP + I ML P FF +P +D+ P+
Sbjct: 617 DFPLXMPAEPITLMLRPRHFFTENPGLDIQPS 648
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 221/684 (32%), Positives = 323/684 (47%), Gaps = 72/684 (10%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQ-VVALADAYFFPPFQP 141
HP DP+S AE+ PE F+++ R++P K+ ++ +A
Sbjct: 2 HPYDPISDAELQLTSQLIKDATKGPE---RPHFIQIDRLDPPKKDMIRYLEA-------- 50
Query: 142 SLIPRTKGGPIIPTKLPPRRARLV-VYNKRSNETSIWVVELSEVHAATRGGHHRGKVISS 200
G P+ P +R+ VY + +V +S H T +G VI
Sbjct: 51 ----ERTGKPL------PHISRMTYVYYYIGLDFYKALVNVSYGHIITNQKQPKG-VIGP 99
Query: 201 KVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPS 260
+ D+Q E E + P + ++K + V+ DPW G S D
Sbjct: 100 LIAEDIQ---------EIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDSKED--- 147
Query: 261 RRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320
R L + ++ + + P N Y+ P ++ V E +K V + +
Sbjct: 148 RMLIQCYMYLASAAH-PESNHYSLP---------LKFSPVFECLTKKFVRMDYLPGGADE 197
Query: 321 TAGETRG--------------GVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFT 366
T ET+ G +KPL + QPEGPSF V+GH + WQ W F + T
Sbjct: 198 TVTETQAWDEFPFVEYHPDLNGETIVPLKPLIVQQPEGPSFNVDGHKISWQGWEFFVIPT 257
Query: 367 PREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAH 426
REG IY + + +GR V +RLS EM VPYGDP P +RK AFD G+ G G +
Sbjct: 258 VREGFAIYDIHF----KGRS-VVYRLSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGN 312
Query: 427 SLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSR 486
SL GCDCLG IKY D N G I N VCLHE+D G+L+KH ++RT + + R R
Sbjct: 313 SLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQDGGLLYKHTNYRTNVPVIARRR 372
Query: 487 RLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYA 546
V I TVAN EY F Q G+I V+ TGILS L +GT + P + A
Sbjct: 373 EFVVQTIATVANXEYMLNIIFDQAGEIRIHVRATGILSTMPLDKDVTVPWGTNVGPRVMA 432
Query: 547 PVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAM 606
HQH R+D AVD G + V + +++E+ K N +N F E ++ E
Sbjct: 433 AYHQHMLSFRIDPAVD---GYENTVVFDDVIRMEKNTKLNPYNVGFVTERTVV--EKPGY 487
Query: 607 RDCNPLTARHWIIRNTRTVNRTGQL-TGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWV 665
+ +P T R + I N +N + YK++ + + LA ++ +RA F +WV
Sbjct: 488 VEQSPFTNRSYKIINENKINPISKKPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWV 547
Query: 666 TPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVM 725
T Y +E+Y GEF NQ+ + GL W ++ ++ + V+W G THIPR+ED+PVM
Sbjct: 548 TKYRDNELYAAGEFTNQS-QTDTGLGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVM 606
Query: 726 PVDRIGFMLMPHGFFNCSPAVDVP 749
PV+ L+P GFF+ +PA+ VP
Sbjct: 607 PVEAHEIALVPFGFFDKNPALSVP 630
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 183/684 (26%), Positives = 312/684 (45%), Gaps = 77/684 (11%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPS 142
HPL+ L+A EI + + + RF E+ + PDK+ V P QP
Sbjct: 94 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 149
Query: 143 LIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202
R+A +++ + + + VV+L K++S +
Sbjct: 150 -----------------RKADVIMLDGKHIIEA--VVDL-----------QNNKLLSWQP 179
Query: 203 VPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSR- 261
+ D + ++A + ++ + F A+KKRGI D V+ P VGY D +
Sbjct: 180 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 239
Query: 262 -RLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLP-PADPLRN 319
RL K + + D N +A P+E + +VD++ +++ E+ +V +P A P
Sbjct: 240 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 294
Query: 320 YTAGETRGGVDRSD--IKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVA 377
G DR +KP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 295 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 346
Query: 378 YVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 437
Y D +R V + S M+VPYGDP+ Y K D+G+ G+G + +G D
Sbjct: 347 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSN 405
Query: 438 IKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRR-LSVSFICTV 496
+ ++ G I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 406 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 463
Query: 497 ANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVR--------KYGTIIAPGLYAPV 548
NY+Y F W F+++G I + TGI ++ ++ + +YGT+I +
Sbjct: 464 GNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 523
Query: 549 HQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRD 608
HQH + R+D+ VD + +N +V M+ V+ + + + +E A +
Sbjct: 524 HQHIYNFRLDLDVDGE----NNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 579
Query: 609 CNPLTARHWIIRNTRTVNRTGQLTGYKLVP-GSNCLPLAGS-----EAKVLRRAAFLKHN 662
+P T R ++ N NR G Y+++P P+A + + R +F+
Sbjct: 580 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637
Query: 663 LWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDW 722
LWVT Y E +P G++PN++ GL + + N SL+ TD V+W G TH+ R E+W
Sbjct: 638 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEW 696
Query: 723 PVMPVDRIGFMLMPHGFFNCSPAV 746
P+MP + + +L P FF+ +P +
Sbjct: 697 PIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 182/684 (26%), Positives = 311/684 (45%), Gaps = 77/684 (11%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPS 142
HPL+ L+A EI + + + RF E+ + PDK+ V P QP
Sbjct: 94 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 149
Query: 143 LIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202
R+A +++ + + + VV+L K++S +
Sbjct: 150 -----------------RKADVIMLDGKHIIEA--VVDL-----------QNNKLLSWQP 179
Query: 203 VPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSR- 261
+ D + ++A + ++ + F A+KKRGI D V+ P VGY D +
Sbjct: 180 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 239
Query: 262 -RLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLP-PADPLRN 319
RL K + + D N +A P+E + +VD++ +++ E+ +V +P A P
Sbjct: 240 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 294
Query: 320 YTAGETRGGVDRSD--IKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVA 377
G DR +KP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 295 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 346
Query: 378 YVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 437
Y D +R V + S M+VPYGDP+ Y K D+G+ G+G + +G D
Sbjct: 347 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSN 405
Query: 438 IKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRR-LSVSFICTV 496
+ ++ G I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 406 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 463
Query: 497 ANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVR--------KYGTIIAPGLYAPV 548
N +Y F W F+++G I + TGI ++ ++ + +YGT+I +
Sbjct: 464 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 523
Query: 549 HQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRD 608
HQH + R+D+ VD + +N +V M+ V+ + + + +E A +
Sbjct: 524 HQHIYNFRLDLDVDGE----NNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 579
Query: 609 CNPLTARHWIIRNTRTVNRTGQLTGYKLVP-GSNCLPLAGS-----EAKVLRRAAFLKHN 662
+P T R ++ N NR G Y+++P P+A + + R +F+
Sbjct: 580 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637
Query: 663 LWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDW 722
LWVT Y E +P G++PN++ GL + + N SL+ TD V+W G TH+ R E+W
Sbjct: 638 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEW 696
Query: 723 PVMPVDRIGFMLMPHGFFNCSPAV 746
P+MP + + +L P FF+ +P +
Sbjct: 697 PIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 181/684 (26%), Positives = 311/684 (45%), Gaps = 77/684 (11%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPS 142
HPL+ L+A EI + + + RF E+ + PDK+ V P QP
Sbjct: 89 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 144
Query: 143 LIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202
R+A +++ + + + VV+L K++S +
Sbjct: 145 -----------------RKADVIMLDGKHIIEA--VVDL-----------QNNKLLSWQP 174
Query: 203 VPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSR- 261
+ D + ++A + ++ + F A+KKRGI D V+ P VGY D +
Sbjct: 175 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 234
Query: 262 -RLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLP-PADPLRN 319
RL K + + D N +A P+E + +VD++ +++ E+ +V +P A P
Sbjct: 235 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 289
Query: 320 YTAGETRGGVDRSD--IKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVA 377
G DR +KP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 290 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 341
Query: 378 YVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 437
Y D +R V + S M+VPYGDP+ Y K ++G+ G+G + +G D
Sbjct: 342 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLNSGDYGMGTLTSPIARGKDAPSN 400
Query: 438 IKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRR-LSVSFICTV 496
+ ++ G I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 401 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 458
Query: 497 ANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVR--------KYGTIIAPGLYAPV 548
N +Y F W F+++G I + TGI ++ ++ + +YGT+I +
Sbjct: 459 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 518
Query: 549 HQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRD 608
HQH + R+D+ VD + +N +V M+ V+ + + + +E A +
Sbjct: 519 HQHIYNFRLDLDVDGE----NNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 574
Query: 609 CNPLTARHWIIRNTRTVNRTGQLTGYKLVP-GSNCLPLAGS-----EAKVLRRAAFLKHN 662
+P T R ++ N NR G Y+++P P+A + + R +F+
Sbjct: 575 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632
Query: 663 LWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDW 722
LWVT Y E +P G++PN++ GL + + N SL+ TD V+W G TH+ R E+W
Sbjct: 633 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEW 691
Query: 723 PVMPVDRIGFMLMPHGFFNCSPAV 746
P+MP + + +L P FF+ +P +
Sbjct: 692 PIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 181/684 (26%), Positives = 311/684 (45%), Gaps = 77/684 (11%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPS 142
HPL+ L+A EI + + + RF E+ + PDK+ V P QP
Sbjct: 94 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 149
Query: 143 LIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202
R+A +++ + + + VV+L K++S +
Sbjct: 150 -----------------RKADVIMLDGKHIIEA--VVDL-----------QNNKLLSWQP 179
Query: 203 VPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSR- 261
+ D + ++A + ++ + F A+KKRGI D V+ P VGY D +
Sbjct: 180 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 239
Query: 262 -RLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLP-PADPLRN 319
RL K + + D N +A P+E + +VD++ +++ E+ +V +P A P
Sbjct: 240 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 294
Query: 320 YTAGETRGGVDRSD--IKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVA 377
G DR +KP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 295 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 346
Query: 378 YVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 437
Y D +R V + S M+VP+GDP+ Y K D+G+ G+G + +G D
Sbjct: 347 YNDNGT-KRKVMYEGSLGGMIVPFGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSN 405
Query: 438 IKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRR-LSVSFICTV 496
+ ++ G I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 406 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 463
Query: 497 ANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVR--------KYGTIIAPGLYAPV 548
N +Y F W F+++G I + TGI ++ ++ + +YGT+I +
Sbjct: 464 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 523
Query: 549 HQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRD 608
HQH + R+D+ VD + +N +V M+ V+ + + + +E A +
Sbjct: 524 HQHIYNFRLDLDVDGE----NNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 579
Query: 609 CNPLTARHWIIRNTRTVNRTGQLTGYKLVP-GSNCLPLAGS-----EAKVLRRAAFLKHN 662
+P T R ++ N NR G Y+++P P+A + + R +F+
Sbjct: 580 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637
Query: 663 LWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDW 722
LWVT Y E +P G++PN++ GL + + N SL+ TD V+W G TH+ R E+W
Sbjct: 638 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEW 696
Query: 723 PVMPVDRIGFMLMPHGFFNCSPAV 746
P+MP + + +L P FF+ +P +
Sbjct: 697 PIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 181/684 (26%), Positives = 311/684 (45%), Gaps = 77/684 (11%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPS 142
HPL+ L+A EI + + + RF E+ + PDK+ V P QP
Sbjct: 89 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 144
Query: 143 LIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202
R+A +++ + + + VV+L K++S +
Sbjct: 145 -----------------RKADVIMLDGKHIIEA--VVDL-----------QNNKLLSWQP 174
Query: 203 VPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSR- 261
+ D + ++A + ++ + F A+KKRGI D V+ P VGY D +
Sbjct: 175 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 234
Query: 262 -RLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLP-PADPLRN 319
RL K + + D N +A P+E + +VD++ +++ E+ +V +P A P
Sbjct: 235 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 289
Query: 320 YTAGETRGGVDRSD--IKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVA 377
G DR +KP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 290 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 341
Query: 378 YVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 437
Y D +R V + S M+VPYGDP+ Y K ++G+ G+G + +G D
Sbjct: 342 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLESGDYGMGTLTSPIARGKDAPSN 400
Query: 438 IKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRR-LSVSFICTV 496
+ ++ G I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 401 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 458
Query: 497 ANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVR--------KYGTIIAPGLYAPV 548
N +Y F W F+++G I + TGI ++ ++ + +YGT+I +
Sbjct: 459 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 518
Query: 549 HQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRD 608
HQH + R+D+ VD + +N +V M+ V+ + + + +E A +
Sbjct: 519 HQHIYNFRLDLDVDGE----NNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 574
Query: 609 CNPLTARHWIIRNTRTVNRTGQLTGYKLVP-GSNCLPLAGS-----EAKVLRRAAFLKHN 662
+P T R ++ N NR G Y+++P P+A + + R +F+
Sbjct: 575 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632
Query: 663 LWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDW 722
LWVT Y E +P G++PN++ GL + + N SL+ TD V+W G TH+ R E+W
Sbjct: 633 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEW 691
Query: 723 PVMPVDRIGFMLMPHGFFNCSPAV 746
P+MP + + +L P FF+ +P +
Sbjct: 692 PIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 241 bits (616), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 181/684 (26%), Positives = 310/684 (45%), Gaps = 77/684 (11%)
Query: 83 HPLDPLSAAEISXXXXXXXXXXXXPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPS 142
HPL+ L+A EI + + + RF E+ + PDK+ V P QP
Sbjct: 89 HPLNALTADEIKQAVEIVKASA---DFKPNTRFTEISLLPPDKEAVWAFALENKPVDQP- 144
Query: 143 LIPRTKGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202
R+A +++ + + + VV+L K++S +
Sbjct: 145 -----------------RKADVIMLDGKHIIEA--VVDL-----------QNNKLLSWQP 174
Query: 203 VPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSR- 261
+ D + ++A + ++ + F A+KKRGI D V+ P VGY D +
Sbjct: 175 IKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQD 234
Query: 262 -RLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLP-PADPLRN 319
RL K + + D N +A P+E + +VD++ +++ E+ +V +P A P
Sbjct: 235 ARLLKVISYL----DVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFD- 289
Query: 320 YTAGETRGGVDRSD--IKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVA 377
G DR +KP+QI++PEG ++ + G + W+ W+F + R G +I +V
Sbjct: 290 --------GRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 341
Query: 378 YVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 437
Y D +R V + S M+VPYGDP+ Y K +G+ G+G + +G D
Sbjct: 342 YNDNGT-KRKVMYEGSLGGMIVPYGDPDIGWYFKAYLASGDYGMGTLTSPIARGKDAPSN 400
Query: 438 IKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRR-LSVSFICTV 496
+ ++ G I + + E G +KHQ+ G V RR L V +I TV
Sbjct: 401 AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQE--MGQPNVSTERRELVVRWISTV 458
Query: 497 ANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVR--------KYGTIIAPGLYAPV 548
N +Y F W F+++G I + TGI ++ ++ + +YGT+I +
Sbjct: 459 GNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTT 518
Query: 549 HQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRD 608
HQH + R+D+ VD + +N +V M+ V+ + + + +E A +
Sbjct: 519 HQHIYNFRLDLDVDGE----NNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQK 574
Query: 609 CNPLTARHWIIRNTRTVNRTGQLTGYKLVP-GSNCLPLAGS-----EAKVLRRAAFLKHN 662
+P T R ++ N NR G Y+++P P+A + + R +F+
Sbjct: 575 FDPGTIR--LLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632
Query: 663 LWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDW 722
LWVT Y E +P G++PN++ GL + + N SL+ TD V+W G TH+ R E+W
Sbjct: 633 LWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEW 691
Query: 723 PVMPVDRIGFMLMPHGFFNCSPAV 746
P+MP + + +L P FF+ +P +
Sbjct: 692 PIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 251/533 (47%), Gaps = 27/533 (5%)
Query: 225 FPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYAR 284
+PPF +++KKRG+ ++ ++ + +G+ + + R + F + + N Y R
Sbjct: 118 YPPFIDSVKKRGL-NLSEIVCSSFTMGWF--GEEKNVRTVRLDCFMKEST----VNIYVR 170
Query: 285 PVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGET--RGGVDRSDIKPLQIVQP 342
P+ GI ++ D+ M ++E+ DR + +P A+ + ++ G S L QP
Sbjct: 171 PITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHS----LTSHQP 226
Query: 343 EGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGR-RPVAHRLSFVEMVVPY 401
+GP F++NGH V W W F IGF R G++I + D + + R V ++ E+ VPY
Sbjct: 227 QGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPY 286
Query: 402 GDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCL 461
DP + Y K FD+GE G G + SL DC + ++ D + + G ++N +C+
Sbjct: 287 QDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICV 346
Query: 462 HEEDHGILWKHQDW---RTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVK 518
E+ I+W+H + + E R L V I TV N + W F G I+ +
Sbjct: 347 FEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIA 406
Query: 519 LTGILSLGAL---QPGEVRK--YGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVV 573
L+GIL + E+++ +G +++ H HF++ +D +D HN
Sbjct: 407 LSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDG----THNSFE 462
Query: 574 EMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTG 633
+ ++K + +++ E + L ++ N G G
Sbjct: 463 KTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVG 522
Query: 634 YKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATW 693
Y+L+P PL + R AF +N+WVT Y E + GG + + + R + LA W
Sbjct: 523 YRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHS-RGDDTLAVW 581
Query: 694 VEQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAV 746
+QNR + DIV+W+V G+ H+P ED+P+MP+ F L P FF +P +
Sbjct: 582 TKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVL 634
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 251/533 (47%), Gaps = 27/533 (5%)
Query: 225 FPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYAR 284
+PPF +++KKRG+ ++ ++ + +G+ + + R + F + + N Y R
Sbjct: 113 YPPFIDSVKKRGL-NLSEIVCSSFTMGWF--GEEKNVRTVRLDCFMKEST----VNIYVR 165
Query: 285 PVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNYTAGET--RGGVDRSDIKPLQIVQP 342
P+ GI ++ D+ M ++E+ DR + +P A+ + ++ G S L QP
Sbjct: 166 PITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHS----LTSHQP 221
Query: 343 EGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGR-RPVAHRLSFVEMVVPY 401
+GP F++NGH V W W F IGF R G++I + D + + R V ++ E+ VPY
Sbjct: 222 QGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPY 281
Query: 402 GDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCL 461
DP + Y K FD+GE G G + SL DC + ++ D + + G ++N +C+
Sbjct: 282 QDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICV 341
Query: 462 HEEDHGILWKHQDW---RTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVK 518
E+ I+W+H + + E R L V I TV N + W F G I+ +
Sbjct: 342 FEQYGNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIA 401
Query: 519 LTGILSLGAL---QPGEVRK--YGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVV 573
L+GIL + E+++ +G +++ H HF++ +D +D HN
Sbjct: 402 LSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDG----THNSFE 457
Query: 574 EMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTG 633
+ ++K + +++ E + L ++ N G G
Sbjct: 458 KTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVG 517
Query: 634 YKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATW 693
Y+L+P PL + R AF +N+WVT Y E + GG + + + R + LA W
Sbjct: 518 YRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHS-RGDDTLAVW 576
Query: 694 VEQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAV 746
+QNR + DIV+W+V G+ H+P ED+P+MP+ F L P FF +P +
Sbjct: 577 TKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVL 629
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 179/439 (40%), Gaps = 51/439 (11%)
Query: 333 DIKPLQIVQPEGPSFRVNGH--FVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAH 390
D K ++V+PEG + +G + W W F ++ G+ Y + + +G R + +
Sbjct: 319 DRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITF----KGER-IVY 373
Query: 391 RLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAG 450
LS E++ YG +DP + + G+G N SL G DC YF +
Sbjct: 374 ELSLQELIAEYG-SDDPFNQHTFYSDISYGVG-NRFSLVPGYDCPATAGYFTTDTFEYDE 431
Query: 451 GVD-TIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQ 509
+ T+ CV ++ED+ +L +H + + ++ L+V FI T+ N +Y F + F+
Sbjct: 432 FYNRTLSYCVFENQEDYSLL-RHTG--ASYSAITQNPTLNVRFISTIGNXDYNFLYKFFL 488
Query: 510 DGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAH 569
DG +E V+ G + G P YG I L H H ++D+ V A
Sbjct: 489 DGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRAS 548
Query: 570 NQVVEMNVKVEEP-GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHW--------IIR 620
V++ +V VE P V+N A E L K + + +W +I
Sbjct: 549 KYVMK-DVDVEYPWAPGTVYNTKQIAREVLEKEDFNGI---------NWPENGQGILLIE 598
Query: 621 NTRTVNRTGQLTGYKLVPGSNCL------PLAGSEAKVLRRAAFLKHNLWVTPYAHDEMY 674
+ N G Y ++PG + +G E + R+ NL++T + +E+
Sbjct: 599 SAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARS-----NLFLTKHKDEELR 653
Query: 675 PGGEFPNQ---NPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWP--VMPVDR 729
+P V + SL+ DIV W G+ H+P D P +
Sbjct: 654 SSTALNTNALYDPPVNFNAFL---DDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAH 710
Query: 730 IGFMLMPHGFFNCSPAVDV 748
FML P +F+ + D
Sbjct: 711 ASFMLTPFNYFDSENSRDT 729
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 106/439 (24%), Positives = 176/439 (40%), Gaps = 51/439 (11%)
Query: 333 DIKPLQIVQPEGPSFRVNG--HFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAH 390
D K ++V+PEG + +G + W W F ++ G+ Y + + +G R + +
Sbjct: 279 DRKSPRLVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITF----KGER-IVY 333
Query: 391 RLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAG 450
LS E++ YG +DP + + G+G N SL G DC YF +
Sbjct: 334 ELSLQELIAEYG-SDDPFNQHTFYSDISYGVG-NRFSLVPGYDCPSTAGYFTTDTFEYDE 391
Query: 451 GVD-TIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQ 509
+ T+ CV ++ED+ +L +H + + ++ L+V FI T+ N +Y F + F+
Sbjct: 392 FYNRTLSYCVFENQEDYSLL-RHTG--ASYSAITQNPTLNVRFISTIGNXDYNFLYKFFL 448
Query: 510 DGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAH 569
DG +E V+ G + G P YG I L H H ++D+ V A
Sbjct: 449 DGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRA- 507
Query: 570 NQVVEMNVKVEEP-GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHW--------IIR 620
+Q V +V VE P V+N A E + + +W +I
Sbjct: 508 SQYVMKDVDVEYPWAPGTVYNTKQIAREVFENEDFNGI---------NWPENGQGILLIE 558
Query: 621 NTRTVNRTGQLTGYKLVPGSNCL------PLAGSEAKVLRRAAFLKHNLWVTPYAHDEMY 674
+ N G Y ++PG + +G E + R+ NL++T + E+
Sbjct: 559 SAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARS-----NLFLTKHKDTELR 613
Query: 675 PGGEFPNQ---NPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWP--VMPVDR 729
+P V + SL+ DIV W G+ H+P D P +
Sbjct: 614 SSTALNTNALYDPPVNFNAFL---DDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAH 670
Query: 730 IGFMLMPHGFFNCSPAVDV 748
FML P +F+ + D
Sbjct: 671 ASFMLTPFNYFDSENSRDT 689
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 171/419 (40%), Gaps = 20/419 (4%)
Query: 336 PLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFV 395
PLQ P+GP F V G+ V W F G G ++ V + +G R +A+ +S
Sbjct: 296 PLQF-HPQGPRFSVQGNRVASSLWTFSFGLGAFSGPRVFDVRF----QGER-LAYEISLQ 349
Query: 396 EMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTI 455
E YG D+G G+G A L +G DC Y D HF + T+
Sbjct: 350 EAGAVYGGNTPAAMLTRYMDSGF-GMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTL 408
Query: 456 ENCVCLHEEDHGILWK--HQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKI 513
+ C+ E++ G+ + H D+ + L + T+ N +Y + FY +G I
Sbjct: 409 HDAFCVFEQNKGLPLRRHHSDFLSHYFGGVAQTVLVFRSVSTMLNXDYVWDMVFYPNGAI 468
Query: 514 EAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVV 573
E ++ TG +S A G R+YG + PVH H ++D+ V G N V
Sbjct: 469 EVKLHATGYIS-SAFLFGAARRYGNQVGEHTLGPVHTHSAHYKVDLDV----GGLENWVW 523
Query: 574 EMN---VKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQ 630
+ V P + L++E QA + R+ + + ++ N+ G
Sbjct: 524 AEDMAFVPTAIPWSPEHQIQRLQVTRKQLETEEQAAFPLGGASPRYLYLASKQS-NKWGH 582
Query: 631 LTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGL 690
GY++ S + + R ++ ++ L +T E F +P
Sbjct: 583 PRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAITQRKETEPSSSSVFNQNDPWTPTVD 642
Query: 691 ATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWP--VMPVDRIGFMLMPHGFFNCSPAVD 747
+ N ++ D+V W G HIP ED P V + +GF L P+ FF+ P++D
Sbjct: 643 FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEPSMD 701
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 167/417 (40%), Gaps = 31/417 (7%)
Query: 342 PEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPY 401
P+GP F V G V W F G G I+ V + +G R V + +S E + Y
Sbjct: 303 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRF----QGERLV-YEISLQEALAIY 357
Query: 402 GDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCL 461
G N P + G G+GK L +G DC Y D HF + TI + C+
Sbjct: 358 GG-NSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCV 416
Query: 462 HEEDHGI-LWKHQD-----WRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEA 515
E++ G+ L +H + GLAE L V + T+ N +Y + F+ G IE
Sbjct: 417 FEQNQGLPLRRHHSDLYSHYFGGLAET----VLVVRSMSTLLNXDYVWDTVFHPSGAIEI 472
Query: 516 EVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEM 575
TG +S A G KYG ++ VH H A + +D E +M
Sbjct: 473 RFYATGYIS-SAFLFGATGKYGNQVSEHTLGTVHTH--SAHFKVDLDVAGLENWVWAEDM 529
Query: 576 -NVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGY 634
V + P +LL+ E QA T R+ + + + N+ G GY
Sbjct: 530 VFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHS-NKWGHPRGY 588
Query: 635 KLVPGSNCLPLAG----SEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGL 690
++ L AG + + R ++ ++ L VT +E F +P
Sbjct: 589 RI----QMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVD 644
Query: 691 ATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWP--VMPVDRIGFMLMPHGFFNCSPA 745
+ N ++ D+V W G HIP ED P V + +GF L P+ FF+ P+
Sbjct: 645 FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPS 701
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 167/417 (40%), Gaps = 31/417 (7%)
Query: 342 PEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPY 401
P+GP F V G V W F G G I+ V + +G R V + +S E + Y
Sbjct: 318 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRF----QGERLV-YEISLQEALAIY 372
Query: 402 GDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCL 461
G N P + G G+GK L +G DC Y D HF + TI + C+
Sbjct: 373 GG-NSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCV 431
Query: 462 HEEDHGI-LWKHQD-----WRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEA 515
E++ G+ L +H + GLAE L V + T+ N +Y + F+ G IE
Sbjct: 432 FEQNQGLPLRRHHSDLYSHYFGGLAET----VLVVRSMSTLLNXDYVWDTVFHPSGAIEI 487
Query: 516 EVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEM 575
TG +S A G KYG ++ VH H A + +D E +M
Sbjct: 488 RFYATGYIS-SAFLFGATGKYGNQVSEHTLGTVHTH--SAHFKVDLDVAGLENWVWAEDM 544
Query: 576 -NVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGY 634
V + P +LL+ E QA T R+ + + + N+ G GY
Sbjct: 545 VFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHS-NKWGHPRGY 603
Query: 635 KLVPGSNCLPLAG----SEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGL 690
++ L AG + + R ++ ++ L VT +E F +P
Sbjct: 604 RI----QMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVD 659
Query: 691 ATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWP--VMPVDRIGFMLMPHGFFNCSPA 745
+ N ++ D+V W G HIP ED P V + +GF L P+ FF+ P+
Sbjct: 660 FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPS 716
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 167/417 (40%), Gaps = 31/417 (7%)
Query: 342 PEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPY 401
P+GP F V G V W F G G I+ V + +G R V + +S E + Y
Sbjct: 290 PQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRF----QGERLV-YEISLQEALAIY 344
Query: 402 GDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCL 461
G N P + G G+GK L +G DC Y D HF + TI + C+
Sbjct: 345 GG-NSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCV 403
Query: 462 HEEDHGI-LWKHQD-----WRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEA 515
E++ G+ L +H + GLAE L V + T+ N +Y + F+ G IE
Sbjct: 404 FEQNQGLPLRRHHSDLYSHYFGGLAET----VLVVRSMSTLLNXDYVWDTVFHPSGAIEI 459
Query: 516 EVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEM 575
TG +S A G KYG ++ VH H A + +D E +M
Sbjct: 460 RFYATGYIS-SAFLFGATGKYGNQVSEHTLGTVHTH--SAHFKVDLDVAGLENWVWAEDM 516
Query: 576 -NVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGY 634
V + P +LL+ E QA T R+ + + + N+ G GY
Sbjct: 517 VFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHS-NKWGHPRGY 575
Query: 635 KLVPGSNCLPLAG----SEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGL 690
++ L AG + + R ++ ++ L VT +E F +P
Sbjct: 576 RI----QMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVD 631
Query: 691 ATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWP--VMPVDRIGFMLMPHGFFNCSPA 745
+ N ++ D+V W G HIP ED P V + +GF L P+ FF+ P+
Sbjct: 632 FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPS 688
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 176/435 (40%), Gaps = 31/435 (7%)
Query: 324 ETRGGVDRSDIK-PLQIVQPEGPSFRVNGH--FVEWQKWNFRIGFTPREGLIIYSVAYVD 380
E RG V D K P ++ P+G + V+ +V W ++F I F GL ++ + Y
Sbjct: 314 EQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDTGLSLFDIKY-- 371
Query: 381 GSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKY 440
+G+R V + L E + Y NDP A+ G G A L KG DC Y Y
Sbjct: 372 --KGQR-VLYELGLQEALAHYA-ANDPVQSSVAYLDSYYGFGPYAFELLKGYDCPSYASY 427
Query: 441 FDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQDWRTGLAEVRRSRRLSVSFICTVANY 499
+ F T + +CL E D + +H + V ++ ++ + T+ N
Sbjct: 428 LNTSFYK-DEETHTHVDSLCLFEFDADYPMARHS--TSEFVSVTKNVYFTLRSVSTIGNX 484
Query: 500 EYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDM 559
+Y F ++F+ DG I EV+ +G + + +G I L +H H + D
Sbjct: 485 DYMFSYNFHMDGTIGVEVRASGYIQSAYY--ANNQDFGYQIHDSLSGSMHDHVLNFKADF 542
Query: 560 AVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDC--NPLTARHW 617
+ P V + V + N N + SE +A + N T H
Sbjct: 543 DI-LGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNWGFNGQTQLH- 600
Query: 618 IIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAA-FLKHNLWVTPYAHD----E 672
+ N N+ G+ GY+++P + L + L AA + ++++ VT HD
Sbjct: 601 -VVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTR-QHDFEPTS 658
Query: 673 MYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWP--VMPVDRI 730
+P NP V +T+ SL +TD+V+W G+ H+P D P V
Sbjct: 659 AHPYNSQDIHNPPV--DFSTFF-NGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTTAHS 715
Query: 731 GFMLMPHGFFNCSPA 745
G P + P+
Sbjct: 716 GVAFTPLNYLPGDPS 730
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 180/448 (40%), Gaps = 41/448 (9%)
Query: 338 QIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEM 397
++VQP GP FR+ G+ V + W+F GL + +V + G +A+ +S E
Sbjct: 281 RLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHF-----GGERIAYEVSVQEA 335
Query: 398 VVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIEN 457
V YG + D G GLG H L G DC + D A
Sbjct: 336 VALYGGHTPAGMQTKYLDVGW-GLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPR 394
Query: 458 CVCLHEEDHGI-LWKH--QDWRTGLAEVR--RSRRLSVSFICTVANYEYAFFWHFYQDGK 512
+CL E G+ L +H +++ G + + L + TV N +Y + + FY +G
Sbjct: 395 ALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNXDYIWDFIFYPNGV 454
Query: 513 IEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQV 572
+EA++ TG + P +R +GT + L +H H R+D+ D + Q
Sbjct: 455 MEAKMHATGYVHATFYTPEGLR-HGTRLHTHLIGNIHTHLVHYRVDL--DVAGTKNSFQT 511
Query: 573 VEMNVK-VEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQL 631
++M ++ + P E+ E QA ++ + + + N G
Sbjct: 512 LQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQE-NPWGHK 570
Query: 632 TGYKLVPGS---NCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEF----PNQNP 684
Y+L S LP E + + A ++ L VT Y E+ + P P
Sbjct: 571 RSYRLQIHSMADQVLPPGWQEEQAITWA---RYPLAVTKYRESELCSSSIYHQNDPWDPP 627
Query: 685 RVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWP--VMPVDRIGFMLMPHGFFNC 742
V E ++ N ++E D+V W G HIP ED P P + +GF+L P FF
Sbjct: 628 VVFE---QFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFF-- 682
Query: 743 SPAVDVPPNESDLDLKDTAIAEKPVQNG 770
P + L +DT I P NG
Sbjct: 683 -------PEDPSLASRDTVIV-WPRDNG 702
>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
Length = 394
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 107 PEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQP 141
PE+RD + E +R PD+ V AL D FF QP
Sbjct: 21 PEIRDRAQATEDLRRLPDETVKALDDVGFFTLLQP 55
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 154 PTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQ----PP 209
P +P +V+ N N ++ + E+H R G G++ S V D +
Sbjct: 159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG---GELYFSDVYADRRLSEAAQ 215
Query: 210 MDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDP 247
D + Y EC FR + + G D+ LV V P
Sbjct: 216 QDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVSVGP 253
>pdb|3IZS|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|O Chain O, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|O Chain O, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|N Chain N, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 204
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 362 RIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDP-----NDPHYRKNAFDA 416
R+G+ ++G +IY V G+R +RPV + YG P N+ Y+++
Sbjct: 50 RLGYKAKQGFVIYRVRVRRGNR-KRPVPKGAT-------YGKPTNQGVNELKYQRSLRAT 101
Query: 417 GEDGLGKNAHSLK 429
E+ +G+ A +L+
Sbjct: 102 AEERVGRRAANLR 114
>pdb|1S1I|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 203
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 362 RIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDP-----NDPHYRKNAFDA 416
R+G+ ++G +IY V G+R +RPV + YG P N+ Y+++
Sbjct: 49 RLGYKAKQGFVIYRVRVRRGNR-KRPVPKGAT-------YGKPTNQGVNELKYQRSLRAT 100
Query: 417 GEDGLGKNAHSLK 429
E+ +G+ A +L+
Sbjct: 101 AEERVGRRAANLR 113
>pdb|3JYW|L Chain L, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 192
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 362 RIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDP-----NDPHYRKNAFDA 416
R+G+ ++G +IY V G+R +RPV + YG P N+ Y+++
Sbjct: 49 RLGYKAKQGFVIYRVRVRRGNR-KRPVPKGAT-------YGKPTNQGVNELKYQRSLRAT 100
Query: 417 GEDGLGKNAHSLK 429
E+ +G+ A +L+
Sbjct: 101 AEERVGRRAANLR 113
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 288 GIHVLVDMQNMVVIEFEDRKLVHLPPADPLR 318
G H+ +DM+NM + E+ ++ LP A PLR
Sbjct: 18 GSHMFIDMENMFDLLKEETEVKDLPGAGPLR 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,473,767
Number of Sequences: 62578
Number of extensions: 1067065
Number of successful extensions: 2308
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2067
Number of HSP's gapped (non-prelim): 60
length of query: 775
length of database: 14,973,337
effective HSP length: 106
effective length of query: 669
effective length of database: 8,340,069
effective search space: 5579506161
effective search space used: 5579506161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)