Query 004080
Match_columns 775
No_of_seqs 177 out of 715
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 17:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 2E-190 5E-195 1617.7 71.7 628 81-756 12-639 (647)
2 PRK14696 tynA tyramine oxidase 100.0 2E-183 4E-188 1573.7 71.4 619 81-752 86-720 (721)
3 COG3733 TynA Cu2+-containing a 100.0 2E-183 5E-188 1484.6 57.7 624 81-752 28-653 (654)
4 PLN02566 amine oxidase (copper 100.0 1E-177 2E-182 1513.4 68.7 607 82-747 21-646 (646)
5 KOG1186 Copper amine oxidase [ 100.0 1E-153 3E-158 1285.9 54.8 638 68-754 13-658 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 8E-143 2E-147 1182.8 35.7 410 336-753 1-413 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 4.5E-23 9.7E-28 188.4 10.4 100 208-312 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.7 4.5E-17 9.8E-22 145.0 4.1 85 83-202 1-85 (86)
9 COG0242 Def N-formylmethionyl- 20.1 98 0.0021 31.7 3.2 23 448-470 118-147 (168)
10 PRK11055 galM galactose-1-epim 16.0 1.5E+03 0.032 25.4 11.7 123 369-521 27-158 (342)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=2.4e-190 Score=1617.71 Aligned_cols=628 Identities=54% Similarity=0.944 Sum_probs=593.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 004080 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (775)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R 160 (775)
+.|||||||++||++|++|||++.. +++.++|++|+|+||+|+.|+. | + .+. .++|
T Consensus 12 ~~HPLdpLt~~Ei~~a~~iv~~~~~---~~~~~~F~~i~L~EP~K~~v~~---~---------~---~g~------~~~R 67 (647)
T PRK11504 12 VSHPLDPLTAAEIEAAVAILRAEGL---LGESTRFVSIELAEPPKAEVLA---F---------D---PGD------PIDR 67 (647)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccc---cCCceEEEEeeccCCCHHHHHh---h---------h---cCC------CCCc
Confidence 4699999999999999999999864 2358999999999999999973 1 1 222 2369
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 004080 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (775)
Q Consensus 161 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l~~~~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~~ 240 (775)
+|+|++++..++.++|++|+|+ .++|++|+.++++||+++.+|+.+|+++|++||+|+++|+||||+++
T Consensus 68 ~a~v~~~~~~~~~~~e~vVdL~-----------~~~V~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~ 136 (647)
T PRK11504 68 RAFVVLYDRATGKTYEAVVSLT-----------AGEVVSWEEIPGVQPPILLEEFEECEEVVRADPRWQAALAKRGITDF 136 (647)
T ss_pred EEEEEEEECCCCcEEEEEEECC-----------CCEEEEEEECCCccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCc
Confidence 9999999998889999999998 58999999999999999999999999999999999999999999988
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCCCC
Q 004080 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320 (775)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~~~p~p~~~~~~~y 320 (775)
++|+||||++||++..++.++||+|++||+|.. +++|+|+||||||.++||+++|||++|+|.+..|+|+.. .||
T Consensus 137 ~~V~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~---~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~--~~Y 211 (647)
T PRK11504 137 DLVMVDPWSAGYFGEPEERGRRLARGLAFVRAD---PGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED--GNY 211 (647)
T ss_pred ceEEEcCccccccCCCCcCCceEEEEEEEEecC---CCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--CCC
Confidence 999999999999887655579999999999953 578999999999999999999999999998877777654 699
Q ss_pred CCCCcCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEEee
Q 004080 321 TAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVP 400 (775)
Q Consensus 321 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~Vp 400 (775)
.++.+. +. |+|+|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|+ .|||+||+|||||+||
T Consensus 212 ~~~~~~-~~-r~dlkPl~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~d~g~-~R~v~YrlslsEm~VP 288 (647)
T PRK11504 212 DPEFIP-PL-RTDLKPLEITQPEGPSFTVDGNEVEWQKWSFRVGFNPREGLVLHQVSYDDGGR-ERPILYRASLSEMVVP 288 (647)
T ss_pred ChhHcc-cc-ccCCCCcceeCCCCCcEEEcCCEEEECCcEEEEecCCCCceEEEEEEEcCCCC-cceEEEEeeeeeeeee
Confidence 887764 44 99999999999999999999999999999999999999999999999998776 4789999999999999
Q ss_pred cCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCccccccccCCCce
Q 004080 401 YGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLA 480 (775)
Q Consensus 401 Ygdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~~ 480 (775)
||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|.|+||||+|||++.+
T Consensus 289 Ygdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D~GilwkHt~~r~~~~ 368 (647)
T PRK11504 289 YGDPSPTHYWKNAFDAGEYGLGRLANSLELGCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEEDYGILWKHTDFRTGSA 368 (647)
T ss_pred cCCCCcchhhceeeeccccCCcccccccccCCCCCCCCEEcceEEecCCCCeEEecCEEEEeeecCCeeeeeeccCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCCCCcCcccceecCCCccccceeeEEEEeeec
Q 004080 481 EVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMA 560 (775)
Q Consensus 481 ~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~d 560 (775)
+++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++.+++..+||++|+|+++|++|||+||||||||
T Consensus 369 ~v~r~r~LVvr~I~TVgNYdYi~~w~F~qdG~Ie~eV~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~d 448 (647)
T PRK11504 369 EVRRSRRLVISFFATVGNYDYGFYWYFYQDGTIEFEVKLTGIVFTAAVPPGETPPYGTLVAPGLYAPNHQHFFNARLDMD 448 (647)
T ss_pred EEEeccEEEEEEEEecccccEEEEEEEecCceEEEEEEeeeEEEeeeeCCCccCCCcceecCCcccccceEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999977777799999999999999999999999999
Q ss_pred ccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCCceeEEEecCC
Q 004080 561 VDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGS 640 (775)
Q Consensus 561 VDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~ 640 (775)
||| .+|||++++++..+.++.||++++|++++|.+++|.+|+++++++++|+|+|+|++++|++|+|+||||+|++
T Consensus 449 IDG----~~Nsv~~~d~~~~p~~~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~ 524 (647)
T PRK11504 449 VDG----PGNSVYEVNSVPVPMGPDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGG 524 (647)
T ss_pred ccC----CCceEEEEEeEecCCCCCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCC
Confidence 997 6899999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEEeccccCCCCC
Q 004080 641 NCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLE 720 (775)
Q Consensus 641 ~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~E 720 (775)
++.+|+.++|+..+||+|++||||||+|+|+|+||+|+|+||+.+ ++||++|+++||+|+|+|||||||||+||+||+|
T Consensus 525 ~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~~Qs~~-~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~E 603 (647)
T PRK11504 525 NPPLLADPGSSIRQRAGFATHHLWVTPYDPDERYAAGDYPNQSAG-GDGLPAYIAADRSIENTDVVLWYTFGITHVPRPE 603 (647)
T ss_pred CccccCCCCchhhhcchhhhCcEEEeccCCCccccCCCCcccCCC-CCCHHHHhcCCCccccCceEEEEecCcccCCChh
Confidence 999999999999999999999999999999999999999999975 5799999999999999999999999999999999
Q ss_pred CCCCCccceeeEEEEeCCCCCCCCCCCCCCCCCCcc
Q 004080 721 DWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESDLD 756 (775)
Q Consensus 721 D~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~~~~~ 756 (775)
||||||++++||+|||+|||++||+||+|++.+.+.
T Consensus 604 D~PvMP~~~~gf~L~P~nFF~~NPaldvp~s~~~~~ 639 (647)
T PRK11504 604 DWPVMPVDYAGFKLKPVGFFDRNPALDLPPEPPAAC 639 (647)
T ss_pred hCCCCccceEEEEEEcCCCCCCCccccCCCcccccc
Confidence 999999999999999999999999999999977543
No 2
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=1.6e-183 Score=1573.66 Aligned_cols=619 Identities=29% Similarity=0.552 Sum_probs=570.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 004080 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (775)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R 160 (775)
..|||||||++||++|++|||++... ...++|++|+|+||+|++|+. | +. .+.. .+|+|
T Consensus 86 ~~HPLdpLt~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~---~---------~~--~~~~----~~~~R 144 (721)
T PRK14696 86 RPHPLNALTADEIKQAVEIVKASADF---KPNTRFTEISLKEPDKEAVWA---F---------AL--ENKP----VDQPR 144 (721)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccc---CCceEEEEEEecCCCcHHHHH---H---------Hh--cCCC----CCCCc
Confidence 46999999999999999999998631 236999999999999999973 1 22 1211 24689
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 004080 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (775)
Q Consensus 161 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l~~~~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~~ 240 (775)
+|+|+++. +..++|++|||+ .++|++|+.++++||+++.+|+.+|+++|++||+|+++|++|||+++
T Consensus 145 ~A~v~~~~--~~~~~e~vVdL~-----------~~~v~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~ 211 (721)
T PRK14696 145 KADVIMLD--GKHVIEAVVDLQ-----------NNKVLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDV 211 (721)
T ss_pred EEEEEEEe--CCCEEEEEEECC-----------CCEEEEEEeCCCccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCC
Confidence 99999985 456999999998 58999999999999999999999999999999999999999999989
Q ss_pred CeEEEecccccccCCCCC--CCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCC
Q 004080 241 DLVMVDPWCVGYHSDADA--PSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLR 318 (775)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~--~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~~~p~p~~~~~~ 318 (775)
++|+||||++||++..++ .++||+|++||+|. +++|+||||||||+++||++++||++|+|++..+.|... .
T Consensus 212 ~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~~~----~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~--~ 285 (721)
T PRK14696 212 KKVITTPLTVGYFDGKDGLKQDARLLKVVSYLDV----GDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA--R 285 (721)
T ss_pred CEEEEeCccccccCCcCccccCceEEEEEEEEcC----CCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--c
Confidence 999999999999887643 37999999999973 579999999999999999999999999998765444433 5
Q ss_pred CCCCCCcCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEE
Q 004080 319 NYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMV 398 (775)
Q Consensus 319 ~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~ 398 (775)
||.+.. . .|+++|||+|+||||+||+|+|++|+||||+||+|||+||||+||||+|+|+|+ .||||||+|||||+
T Consensus 286 ~Y~~~~---~-~r~~lKPl~i~QPeG~sF~v~G~~V~W~~W~f~vgf~~ReGlvL~dv~y~d~g~-~R~v~YrlSlsEm~ 360 (721)
T PRK14696 286 PYDGRD---R-VAPAVKPLQIIEPEGKNYTITGDTIHWRNWDFHLSLDSRVGPMLSTVTYNDNGT-KRKVMYEGSLGGMI 360 (721)
T ss_pred CCCccc---c-ccCCCCCceeeCCCCCCEEEcCCeEEECCcEEEEecCCCcceEEEEEEEcCCCc-ceeEEEEeeeeeEE
Confidence 898865 2 399999999999999999999999999999999999999999999999999876 48899999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCccccccccCCC
Q 004080 399 VPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTG 478 (775)
Q Consensus 399 VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g 478 (775)
||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|++|||++|+++
T Consensus 361 VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D~G~~wkHt~~~~~ 440 (721)
T PRK14696 361 VPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLDETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQP 440 (721)
T ss_pred EeCCCCCchhhhceeeeccccCCcccccccccCCCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeecCCCceeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred ceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCC--------CCcCcccceecCCCccccce
Q 004080 479 LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQP--------GEVRKYGTIIAPGLYAPVHQ 550 (775)
Q Consensus 479 ~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~--------~~~~~yGt~V~~~v~a~~Hq 550 (775)
++++|+|+||||+|+|||||||||+|+|||||+||+||+|||||++.++.. ++..+|||+|+|+++|++||
T Consensus 441 -~~~~r~r~LVvr~i~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~Hq 519 (721)
T PRK14696 441 -NVSTERRELVVRWISTVGNYDYIFDWVFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQ 519 (721)
T ss_pred -cceEeeeEEEEEEEEEecceeEEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccce
Confidence 789999999999999999999999999999999999999999999987533 33468999999999999999
Q ss_pred eeEEEEeeecccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCC
Q 004080 551 HFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQ 630 (775)
Q Consensus 551 H~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~ 630 (775)
|+||||||||||| .+|||++++++..+.+..||++++|+++++.+++|.+|++++++.+.|+ |+|++++|++|+
T Consensus 520 H~f~~RlD~dIDG----~~Nsv~~~d~~~~p~~~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~ 593 (721)
T PRK14696 520 HIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGN 593 (721)
T ss_pred EEEEEEEcccccC----CcceEEEEeeeEccCCCCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCC
Confidence 9999999999997 6999999999988877899999999999999999999999999999996 999999999999
Q ss_pred ceeEEEecCC--CCC----CCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCC
Q 004080 631 LTGYKLVPGS--NCL----PLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETD 704 (775)
Q Consensus 631 p~gYkl~p~~--~~~----~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eD 704 (775)
|+||||+|+. ++. +++.|+|+..+||+|++||||||+|+|+|+||+|+|+||+++ ++||++|+++||+|+|+|
T Consensus 594 pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~~~lwVT~y~d~E~~aaG~y~~qs~g-~~gl~~w~~~~e~i~n~D 672 (721)
T PRK14696 594 PVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTD 672 (721)
T ss_pred eeeEEEecCCCCccccccccccCCcchhhhhhhhhhCcEEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCcccCCc
Confidence 9999999974 322 368999999999999999999999999999999999999986 579999999999999999
Q ss_pred eEEEEEeccccCCCCCCCCCCccceeeEEEEeCCCCCCCCCCCCCCCC
Q 004080 705 IVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNE 752 (775)
Q Consensus 705 iV~W~t~G~~HiPr~ED~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~ 752 (775)
||+|||||+||+||+|||||||++++||+|||+||||+||+||+|+..
T Consensus 673 iV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~nFFd~nPaldvp~~~ 720 (721)
T PRK14696 673 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGLLKKD 720 (721)
T ss_pred eEEEEecCcccCCchhhCCCccceeeeEEEEcCCCCCCCcccCCCCCC
Confidence 999999999999999999999999999999999999999999999864
No 3
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-183 Score=1484.60 Aligned_cols=624 Identities=47% Similarity=0.812 Sum_probs=592.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 004080 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (775)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R 160 (775)
.+|||||||++||++|++|||++... .+.++|..|+|.||+|++++. | ...+ .++.|
T Consensus 28 ~shPLdpLt~~Eik~aVEivr~e~~~---~~~~~F~~VtL~eP~K~~v~~---f------------~~~~-----~~ieR 84 (654)
T COG3733 28 RSHPLDPLTADEIKQAVEIVRAEADF---KKNFAFTEVTLLEPDKQEVLA---F------------RLEN-----KPIER 84 (654)
T ss_pred cCCCCCccCHHHHHHHHHHHHhhccc---CCceeeEEEEecCCchHHHHH---H------------HhcC-----CCcch
Confidence 47999999999999999999997653 468999999999999999973 1 1212 26789
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 004080 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (775)
Q Consensus 161 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l~~~~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~~ 240 (775)
.|++++|..+...++|++|+|+ +.+|.+|+.+++++|+|+.+||..||.+++++|+|+|||+||||+|+
T Consensus 85 ~a~~~~~~~~~~~i~EavV~L~-----------~nkv~~~q~i~~a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~ 153 (654)
T COG3733 85 KALAVVYELDGKGIYEAVVDLD-----------NNKVLSWQPIKDAHPMITLDEFASVENIVRNDPRFIEACKKRGITDM 153 (654)
T ss_pred hhhhheeeccCCceEEEEEEcc-----------cceeeeeEeccccCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchh
Confidence 9999999999999999999998 58999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCCCC
Q 004080 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320 (775)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~~~p~p~~~~~~~y 320 (775)
++|+||||+.||+++++..+||+++.+||+|.. .++|+|+|||+||+++||+.++||++|+|+.++|+|.+. .||
T Consensus 154 ~~V~vdpwt~G~~~~~~~~grr~~~~~m~yr~~---e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~~--~ny 228 (654)
T COG3733 154 DQVIVDPWTAGYFDEEGLKGRRRALKVMWYRDV---EDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMKR--ANY 228 (654)
T ss_pred hceEeccccccccCccccccceeEEEEEEEEec---CCCCcccccccceeeEEEcccCeEEEecCCCcccccccc--cCc
Confidence 999999999999987777899999999999974 468999999999999999999999999999999999854 578
Q ss_pred CCCCcCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEEee
Q 004080 321 TAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVP 400 (775)
Q Consensus 321 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~Vp 400 (775)
..+.+. .. +.++||++|.||||.||+|+|++|+||+|+||+|||+||||+||||+|+|+|. .|+|+||+||+||+||
T Consensus 229 ~~e~i~-~~-~~~~KpiqI~QPeg~sf~i~G~~i~W~~w~frig~n~ReGlvl~dVsY~D~g~-~Rpv~YraSl~eMvVP 305 (654)
T COG3733 229 GRERIG-KA-LGPVKPIQIIQPEGKSFTITGDEISWQNWRFRIGMNPREGLVLSDVSYNDNGN-KRPVLYRASLVEMVVP 305 (654)
T ss_pred CHHHhh-hh-cCCCCCceeecCCCceEEEecCEEEEeeeeEEEeccccCCeEEEEEEEcCCCc-cceEEEEeeecceeee
Confidence 766543 33 67799999999999999999999999999999999999999999999999875 8999999999999999
Q ss_pred cCCCCCccccceeeecCCCCCccCCCCCCCCCCCCC-CeeEeceeeecCCCceEEeeceEEEeeecCCccccccccCCCc
Q 004080 401 YGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLG-YIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGL 479 (775)
Q Consensus 401 Ygdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg-~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~ 479 (775)
||||+++|++|++||+||||+|.++++|.+| ||.| .|+|||+++++.+|+|+++||||||||+|+|+||||+|||++.
T Consensus 306 YGdPd~~h~~K~~fD~GeYglG~l~~plalG-dc~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed~GvlwKH~d~rs~~ 384 (654)
T COG3733 306 YGDPDPGHYFKNAFDSGEYGLGTLTSPLALG-DCAGSNIVLLDATFANYTGEPMTIPNAICIHEEDAGVLWKHQDFRSPN 384 (654)
T ss_pred cCCCCcchhhhhcccccccCccccccchhhc-ccccceeEEEeeeeeccCCceEEecceeEEEeccccceeeehhhcCCc
Confidence 9999999999999999999999999999999 9999 9999999999999999999999999999999999999999999
Q ss_pred eeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCCCCcCc-ccceecCCCccccceeeEEEEee
Q 004080 480 AEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRK-YGTIIAPGLYAPVHQHFFVARMD 558 (775)
Q Consensus 480 ~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~-yGt~V~~~v~a~~HqH~f~~RlD 558 (775)
.+++|.|.||||+|+||+||||+|+|+|||||+||+|++||||+++.+..+++..+ |||+|.|++.|++||||||+|||
T Consensus 385 ~~trr~r~LVVs~i~Tv~NYdYg~~WifhqDGtIe~e~klTGIin~~a~~e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLd 464 (654)
T COG3733 385 VETRRARGLVVSWIATVANYDYGFYWIFHQDGTIEFEAKLTGIINTKAIAEGQPDPTYGTLVDPNVVGHTHQHFFNARLD 464 (654)
T ss_pred cceeeccceEEEEEEeecccceeEEEEEEcCceEEEeecceeEEEeehhcCCCCCCCccceeccccccccceeEEEeeec
Confidence 99999999999999999999999999999999999999999999999988877655 99999999999999999999999
Q ss_pred ecccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCCceeEEEec
Q 004080 559 MAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVP 638 (775)
Q Consensus 559 ~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p 638 (775)
||||| ..|||+++++...+.+++||+||+|+++++++++|++|.+++|+.+.|+|+|+|++|+|..|+|++|||+|
T Consensus 465 m~VDG----~~Nsv~e~nv~~~P~~~~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~ 540 (654)
T COG3733 465 MDVDG----ERNSVVEMNVVGAPITKGNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIP 540 (654)
T ss_pred ccccC----cccceEEEEcccCCCCCCCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEec
Confidence 99998 69999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEEeccccCCC
Q 004080 639 GSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPR 718 (775)
Q Consensus 639 ~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr 718 (775)
+.+..+++.++|++.+|++|++||||||+|++.|+||+|+|+||+.+ ++||++|+++||||+|||||+|||||+||+||
T Consensus 541 ~~~~~~~~~~gs~v~~R~~Fa~~hlwVT~y~p~ErYp~GdYpnq~~~-~~GLp~yi~~d~sl~neDlVvW~T~GitHv~r 619 (654)
T COG3733 541 GHNPTPPVAEGSQVRHRAGFATKHLWVTPYHPGERYPAGDYPNQSAG-GKGLPEYIKDDRSLDNEDLVVWHTFGITHVPR 619 (654)
T ss_pred CCCCCCcCCCCcchhhhhhhccceEEEeccCcccccCCCCCCCCCCC-CCChhhhhhccccccCcceEEEEecCceeccC
Confidence 99999999999999999999999999999999999999999999976 47999999999999999999999999999999
Q ss_pred CCCCCCCccceeeEEEEeCCCCCCCCCCCCCCCC
Q 004080 719 LEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNE 752 (775)
Q Consensus 719 ~ED~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~ 752 (775)
+|||||||++++||+|+|+||||+||+||+|...
T Consensus 620 pED~PvMP~e~~gf~L~P~gFFd~nPai~lp~~~ 653 (654)
T COG3733 620 PEDWPVMPVEWAGFLLKPRGFFDRNPAIDLPRKD 653 (654)
T ss_pred cccCCccccchhceEeccccccccCcccCCCccC
Confidence 9999999999999999999999999999999764
No 4
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=1e-177 Score=1513.35 Aligned_cols=607 Identities=30% Similarity=0.550 Sum_probs=552.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 004080 82 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 161 (775)
Q Consensus 82 ~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R~ 161 (775)
.|||||||++||++|++|||+++... ...++|++|+|+||+|+.|+. | +..++.+. +.|+|+
T Consensus 21 ~HPLdpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------~~~~~~~~----~~p~R~ 82 (646)
T PLN02566 21 YHPLDPLNPQEINKIRLIVQKSHLGN--LPNLTFHFLDLEEPEKRDVLK---W---------LSSNPSNK----SPPPRR 82 (646)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccCC--CCceEEEEEEccCCChHHHHh---h---------hhcccCCC----CCCCcE
Confidence 69999999999999999999986421 136999999999999999973 2 33344333 256899
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCC-CCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 004080 162 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDV-QPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (775)
Q Consensus 162 A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l~~~-~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~~ 240 (775)
|+|++ ..+.+++|++|+|+ .++|++|+.+++. ||+++.+|+.+||++|++||.|+++|++|||+.
T Consensus 83 a~v~~--~~~~~~~e~vVdl~-----------~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~- 148 (646)
T PLN02566 83 AKVVV--RAGGETYELIVDLA-----------TGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNI- 148 (646)
T ss_pred EEEEE--ecCCCEEEEEEECC-----------CCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCc-
Confidence 99655 44457999999998 5899999999988 999999999999999999999999999999954
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCCCC
Q 004080 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320 (775)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~~~p~p~~~~~~~y 320 (775)
++|+||||++||++.. .++|++|++||+|. +++|+|+||||||+++||++++||++|+|....|+|+... +
T Consensus 149 ~~V~~dpw~~G~~~~~--~~~R~~q~~~y~r~----~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~--~- 219 (646)
T PLN02566 149 SEVSCIPFTVGWYGET--VTKRALKISCFYRG----GSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEG--T- 219 (646)
T ss_pred ceEEEeCcccccCCCC--CCcEEEEEEEEEcC----CCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCC--C-
Confidence 7899999999998763 37999999999993 4789999999999999999999999999876556655431 1
Q ss_pred CCCCcCCCCCCCCCCCceecCCC-CCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCC-CcccEEEEeeeeeEE
Q 004080 321 TAGETRGGVDRSDIKPLQIVQPE-GPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSR-GRRPVAHRLSFVEMV 398 (775)
Q Consensus 321 ~~~~~~~~~~r~dlkPl~i~QPe-G~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~-g~R~I~YrlSl~Em~ 398 (775)
+. |+|+||+.|+||| |+||+|+|++|+||+|+||||||+|||||||||+|+|.+. ++|||+||+|||||+
T Consensus 220 -------~~-R~d~kPl~i~QPegG~sF~v~G~~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~ 291 (646)
T PLN02566 220 -------DF-RTKHKPFSFPCNVSDSGFTILGHRVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETF 291 (646)
T ss_pred -------CC-CcCCCCccccCCCCCCcEEEcCCEEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeE
Confidence 23 9999999999999 5999999999999999999999999999999999998542 358999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecC-CccccccccC-
Q 004080 399 VPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDH-GILWKHQDWR- 476 (775)
Q Consensus 399 VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~-GilwkH~d~r- 476 (775)
||||||+++|+||+|||+||||+|.++|+|++||||||+|+|||+++++.+|+|++++|||||||+|+ |+||||++++
T Consensus 292 VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~ 371 (646)
T PLN02566 292 VPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINV 371 (646)
T ss_pred EecCCCCccccccceeeccccCccccccccccCCCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 5999999985
Q ss_pred ------CCceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCC--CCc---CcccceecCCCc
Q 004080 477 ------TGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQP--GEV---RKYGTIIAPGLY 545 (775)
Q Consensus 477 ------~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~--~~~---~~yGt~V~~~v~ 545 (775)
+|.++ .+||||+|+|||||||||+|+|||||+||+||+|||||+|.++.. ++. .+|||+|+|+++
T Consensus 372 ~~~~~r~g~~~----~~LVvr~I~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~ 447 (646)
T PLN02566 372 PGRVIRSGEPE----ISLVVRMVATLGNYDYILDWEFKKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTI 447 (646)
T ss_pred CccccccCcce----EEEEEEEEEEeecccEEEEEEEecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcc
Confidence 44444 599999999999999999999999999999999999999877652 322 589999999999
Q ss_pred cccceeeEEEEeeecccCCCCCCccEEEEEeeeecCC---CCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeC
Q 004080 546 APVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNT 622 (775)
Q Consensus 546 a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~ 622 (775)
|++|||+||||||||||| .+|||++.+++..+. ++.||++++|+++++.+++|.+|++++++++ |.|+|+|+
T Consensus 448 a~~HqH~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~~~np~g~~~~~~~~~~~tE~~a~~~~~~~~-~~~~i~N~ 522 (646)
T PLN02566 448 AVNHDHFLTYYLDLDVDG----NGNSFVKAKLQTARVTAVNASSPRKSYWTVVKETAKTEAEGRIRLGSEP-AELLIVNP 522 (646)
T ss_pred cccceEEEEEEEcccccC----CCCeEEEEeeEEccCCCCCCCCCCcceEEEEEEEecchhhhhhccCCCC-ceEEEECC
Confidence 999999999999999997 699999999987443 3689999999999999999999999999986 66999999
Q ss_pred CCcCCCCCceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceee
Q 004080 623 RTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEE 702 (775)
Q Consensus 623 ~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~ 702 (775)
+++|++|+|+||||+|++++.+|+.++|+..+||+|++||||||+|+|+|+||+|+|+||+++ +.||++|+++||+|+|
T Consensus 523 ~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~~qs~g-~~gl~~w~~~~~~I~~ 601 (646)
T PLN02566 523 NKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVTAYNKSERWAGGFYADRSRG-DDGLAVWSSRNREIEN 601 (646)
T ss_pred CCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEecCCCcccCCCCcCccCCCC-CCChhhhhcCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999986 5699999999999999
Q ss_pred CCeEEEEEeccccCCCCCCCCCCccceeeEEEEeCCCCCCCCCCC
Q 004080 703 TDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVD 747 (775)
Q Consensus 703 eDiV~W~t~G~~HiPr~ED~PvMP~~~~~f~L~P~nFFd~nPald 747 (775)
||||+|||||+||+||+|||||||++++||+|||+|||++||+|.
T Consensus 602 ~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaL~ 646 (646)
T PLN02566 602 KDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPLLR 646 (646)
T ss_pred CceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999983
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-153 Score=1285.94 Aligned_cols=638 Identities=36% Similarity=0.590 Sum_probs=571.6
Q ss_pred CCcCCeeeeccCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccC
Q 004080 68 SSTKGIPMMVRAQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRT 147 (775)
Q Consensus 68 ~~~~~~~~~~~~~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~ 147 (775)
....|+..+..+.+.|||||||+.||.+++.+|+...... ......|+.|.|.||.|+.++. +.
T Consensus 13 ~~~~~~~~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s-~~~~~~~~av~l~eP~K~~vls---------------w~ 76 (670)
T KOG1186|consen 13 RLGPGLVSASQERPSHPLDPLTELELPKVAAILAHLDPGS-PHPAFEAVAVVLFEPQKQPVLS---------------WL 76 (670)
T ss_pred ccccccccccCCCCCCCcCccchhhhhHHHHHHhhcccCC-CCCceEEEEEEecCCCcCccce---------------ec
Confidence 3456788888888999999999999999999999877443 3457889999999999999872 22
Q ss_pred CCCCCCCCCCCCceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeec-CC-CCCCCCHHHHHHHHHHHhcC
Q 004080 148 KGGPIIPTKLPPRRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVV-PD-VQPPMDAVEYAECEAVVKDF 225 (775)
Q Consensus 148 ~~~~~~~~~~P~R~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l-~~-~~ppi~~~E~~~~e~~~~~~ 225 (775)
+ ++ .+ ++|+|||++|. ...+.++|++|||+ .++|++.+.. .+ +.|.++.+|+.+..+++++.
T Consensus 77 ~-gP-~~-~pPpRRA~vVa--R~gg~t~e~~vdls-----------t~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~ 140 (670)
T KOG1186|consen 77 S-GP-LP-HPPPRRALVVE--RHGGPTPEARVDLS-----------TAEVVSIKHHLVGNGYPILTADELFNTSGRVLAF 140 (670)
T ss_pred c-CC-CC-CCCcceeEEEe--ecCCCceEEEEecc-----------hheeeecccccccCccccccHHHHHhhhcCCccc
Confidence 3 33 12 57899999985 44578999999998 5778887666 45 68999999999999999999
Q ss_pred hhHHHHHHHcCCCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEec
Q 004080 226 PPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFED 305 (775)
Q Consensus 226 p~~~~a~~~~gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d 305 (775)
+.|...+.+||+...+ |.|.+|..||+++.+...+||++..||++.+ ..|+|.+||+|++++||+++|||++++|
T Consensus 141 ~~f~~si~~rG~~~s~-vic~~~t~Gwyge~~~g~~Rlik~~~f~~~~----~~n~y~rpieg~yi~vdld~~kVi~~~d 215 (670)
T KOG1186|consen 141 KPFCPRGLRRGDRMSW-VVCYPNTSGWYGEHPVGLERLIKHMAFYRAG----WVNQQVRPIEGFYIIVDLDEMKVIAGRD 215 (670)
T ss_pred cccchhhhccCCccee-EEEecceeeecccCCcchhhhhhhcccccCC----CeeEEEeecCceEEeeccccceEEEEec
Confidence 9999999999986654 7778899998887765558999999999985 3799999999999999999999999999
Q ss_pred CceecCCCCCCCCCCCCCCcCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCc
Q 004080 306 RKLVHLPPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGR 385 (775)
Q Consensus 306 ~~~~p~p~~~~~~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~ 385 (775)
+..+|+|.... .+|..+.. . .-+||+.++|+||||+|+|+.|+|++|+||+||+.|+||+|+||+|.|.+. .
T Consensus 216 ~~~iP~P~~~G-t~~Rs~~~-----p-~~~pLq~isPeGP~FrVeG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d~~~-~ 287 (670)
T KOG1186|consen 216 RVRVPLPKAKG-TELRSSVL-----P-GFKPLQPISPEGPGFRVEGHLVRWANWEFHIGFDVRAGLVISDASFFDEDV-Y 287 (670)
T ss_pred ccccccCCCCC-CccccccC-----C-CCccccccCCCCCceEEEEEEEEeeccEEEEccCCccceEEEEEEEcCCCc-e
Confidence 88888887543 45543321 1 334488788999999999999999999999999999999999999999776 6
Q ss_pred ccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeec
Q 004080 386 RPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEED 465 (775)
Q Consensus 386 R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D 465 (775)
|+|+||+|+|||+||||||+++|++|+|||+||||+|..|++|++|||||++|+|||++|+..+|+|.+++||+||||++
T Consensus 288 r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~ 367 (670)
T KOG1186|consen 288 RRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLAPGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKY 367 (670)
T ss_pred eeEEEEeeeeeeEEecCCCCchhheeeeecccccCCCccccccccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ccccccc-cCCC--ceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCCCCc-Cccccee
Q 004080 466 HG-ILWKHQD-WRTG--LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEV-RKYGTII 540 (775)
Q Consensus 466 ~G-ilwkH~d-~r~g--~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~~~-~~yGt~V 540 (775)
+| +||||++ +..| ..+++++++|||||++|||||||||||+||+||.||++|+|||||+++++..++. ..|||+|
T Consensus 368 ~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~~F~~~G~ie~~v~lTG~l~~~~~~~~~~~~~~Gt~v 447 (670)
T KOG1186|consen 368 AGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDYEFKPSGVIEAGVGLTGVLEVKPVEYGETSDIYGTIV 447 (670)
T ss_pred CCCceeeccccccCCCcccccccccEEEEEEeeeecccceEEEEEEecCCeEEEEEeeEEEEEeecccccccccccccee
Confidence 99 7999999 4555 6899999999999999999999999999999999999999999999999987665 6899999
Q ss_pred cCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeeec-CCCCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEE
Q 004080 541 APGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVE-EPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWII 619 (775)
Q Consensus 541 ~~~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~-~~~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i 619 (775)
+++++|++|||+|+|||||||||. .+|++++..+... ..+..+++.+.+.++++++++|++|+.+++..+++.|.|
T Consensus 448 ~~~~ig~~H~H~~~~rldldvdG~---~n~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~ 524 (670)
T KOG1186|consen 448 AENTIGVNHDHFVTFRLDLDVDGT---KNNSFVRDELVTPRTPPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLV 524 (670)
T ss_pred cccccccccceEEEEEEcccccCC---ccceeeeeeEeecccCCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEE
Confidence 999999999999999999999984 3566666555432 222347888889999999999999999999999999999
Q ss_pred eeCCCcCCCCCceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCc
Q 004080 620 RNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRS 699 (775)
Q Consensus 620 ~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~es 699 (775)
+|++++|+||+|+||||+|++++.+|+.++++.++||+|++||||||+|+++|.||||.|.+|++. +++|+.|.++|++
T Consensus 525 ~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~l~VT~y~~~E~~~~g~y~~~~~~-~~tl~~w~~~nr~ 603 (670)
T KOG1186|consen 525 VNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYNLWVTPYNESEVWASGLYADQSQG-DDTLAVWSQRNRS 603 (670)
T ss_pred ECCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcceeEEeccCccccCcccccccCCCC-CCcceehhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999964 6799999999999
Q ss_pred eeeCCeEEEEEeccccCCCCCCCCCCccceeeEEEEeCCCCCCCCCCCCCCCCCC
Q 004080 700 LEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESD 754 (775)
Q Consensus 700 I~~eDiV~W~t~G~~HiPr~ED~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~~~ 754 (775)
|+|+|||+|||+||||||++||||+||+...||.|||+|||++||+|++|++.+.
T Consensus 604 ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~NFF~~nP~l~~~p~~~~ 658 (670)
T KOG1186|consen 604 IENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRPTNFFERNPSLKSPPSKYV 658 (670)
T ss_pred cccCceEEEEEcceeecCchhcCCCCcccCCceeeccccccccCccccCCCccee
Confidence 9999999999999999999999999999999999999999999999999998765
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=7.7e-143 Score=1182.84 Aligned_cols=410 Identities=54% Similarity=0.956 Sum_probs=374.2
Q ss_pred CceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeee
Q 004080 336 PLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFD 415 (775)
Q Consensus 336 Pl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD 415 (775)
||+|+||||+||+|+|++|+||+|+|||+|++||||+||||+|+|. +|+|+||+|||||+||||||+++|++|+|||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~~---~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~D 77 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGE---RRPILYRLSLQEMVVPYGDPDPPHHRKNAFD 77 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETTE---EEEEEEEEEEEEEEEEEE-SSTTHHH-EEEH
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeCC---CccEEEEEeeeeeeeecCCCCchhhcccccc
Confidence 8999999999999999999999999999999999999999999853 1259999999999999999999999999999
Q ss_pred cCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCccccccccCCCceeeeeeeEEEEEEeee
Q 004080 416 AGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICT 495 (775)
Q Consensus 416 ~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T 495 (775)
+||||||.++++|++||||||+|+|||+++.+++|+|++++|||||||+|.|+||||++++++..+++|+|+||||+|+|
T Consensus 78 ~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~G~l~kH~~~~~~~~~~~r~~~LVvr~i~T 157 (413)
T PF01179_consen 78 SGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDAGPLWKHTDYRTGRFEVRRSRRLVVRTIST 157 (413)
T ss_dssp HHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEEEEEEEEEETTSSEEEEEEEEEEEEEEEEE
T ss_pred ccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecCCchhhcccccccccceeeccEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccceEEEEEEccCCcEEEEEeEeEEEEeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEE
Q 004080 496 VANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEM 575 (775)
Q Consensus 496 VgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~ 575 (775)
||||||||||+|||||+||++|+|||||+++++.+++..+||++|+|+++|++|||+||||||||||| .+|+|+++
T Consensus 158 V~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG----~~Nsv~~~ 233 (413)
T PF01179_consen 158 VGNYDYIFDWIFYQDGSIEVEVRATGILSTSPYAPGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDG----TNNSVVEV 233 (413)
T ss_dssp ETTEEEEEEEEEETTS-EEEEEEEEE---EEETTTTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTS----SEEEEEEE
T ss_pred ccccceEEEEEEecCceEEEEEEeeeEEEEEecCCCCccCCcceEcCCccccceeEEEEEEEccccCC----CCCeEEEE
Confidence 99999999999999999999999999999999988878899999999999999999999999999998 69999999
Q ss_pred eeeecCC---CCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCCceeEEEecCCCCCCCCCCchHH
Q 004080 576 NVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKV 652 (775)
Q Consensus 576 ~~~~~~~---~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~ 652 (775)
+++.++. +..||++++|++++|++++|++|+++++++++|+|+|+|++++|++|+|+||||+|++++.+|+.|+|+.
T Consensus 234 d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~~~~s~~ 313 (413)
T PF01179_consen 234 DIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLAPPDSWV 313 (413)
T ss_dssp EEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SSSTTSCH
T ss_pred EeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccCCCcchh
Confidence 9987754 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEEeccccCCCCCCCCCCccceeeE
Q 004080 653 LRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGF 732 (775)
Q Consensus 653 ~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~PvMP~~~~~f 732 (775)
.+||+|++||||||||+|+|+||+|+|+||++. ++||++|+++||+|+|||||+|+|||+||+||+|||||||++++||
T Consensus 314 ~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~-~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~gf 392 (413)
T PF01179_consen 314 ARRASFARHHLWVTKYKDSERYASGEYNNQSPG-DVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPVEWLGF 392 (413)
T ss_dssp HHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SS-SSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEEEEEEE
T ss_pred hhccccccCceEEeecCCCccCCCCCCccCCCC-CCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCCcEEEE
Confidence 999999999999999999999999999999986 4899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCC
Q 004080 733 MLMPHGFFNCSPAVDVPPNES 753 (775)
Q Consensus 733 ~L~P~nFFd~nPaldvP~s~~ 753 (775)
+|||+|||++||+||+|++.|
T Consensus 393 ~L~P~nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 393 MLKPFNFFDRNPALDVPPSVQ 413 (413)
T ss_dssp EEEEESSSSSSTTTTCTTC--
T ss_pred EEEcCCCCCCCccccCCCCCC
Confidence 999999999999999999875
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.89 E-value=4.5e-23 Score=188.37 Aligned_cols=100 Identities=46% Similarity=0.733 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCC
Q 004080 208 PPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVE 287 (775)
Q Consensus 208 ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~ 287 (775)
|||+.+|+.+++++++++|+|+++|++||+++.+.|+||||++|+++..+ .++|++|++||+|.. ..|+|+|||+
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~-~g~Rl~~~~~~~r~~----~~n~YahPi~ 75 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEES-EGRRLTWVLCFMRDS----GNNFYAHPIE 75 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSST-TTS-EEEEEEEE-SS----TS-GGGSEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCC-CCceEEEEEEEEEcC----CCcccccccC
Confidence 78999999999999999999999999999999999999999999988765 689999999999974 2399999999
Q ss_pred CeEEEEecCCcEEEEEecCc-eecCC
Q 004080 288 GIHVLVDMQNMVVIEFEDRK-LVHLP 312 (775)
Q Consensus 288 g~~~~vD~~~~kvv~i~d~~-~~p~p 312 (775)
||+++||++++||++|++++ .+|.|
T Consensus 76 gl~~~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 76 GLEPLVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp CEEEEEETTTTEEEEEEEEEEEETT-
T ss_pred ceEEEEECCCCEEEEEEeCCceeeCC
Confidence 99999999999999999988 67765
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.66 E-value=4.5e-17 Score=145.01 Aligned_cols=85 Identities=46% Similarity=0.652 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCceE
Q 004080 83 HPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRRA 162 (775)
Q Consensus 83 HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R~A 162 (775)
|||||||++||++|+++|++++.. .+++++|.+|+|.||+|.+|+. +++++. +|+|+|
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~--~~~~~~F~~I~L~EP~K~~vl~---------------~~~~~~-----~p~R~A 58 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPL--AGEKNRFRSIELQEPPKAEVLA---------------FERGGP-----PPPRRA 58 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGT--TTTSEEEEEEEEE---HHHHHH---------------HHCCTT-----TS-EEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcccc--CCCCeEEEEEEeCCCCHHHHhc---------------cccCCc-----CCCeEE
Confidence 999999999999999999998721 2458999999999999999983 245553 579999
Q ss_pred EEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeee
Q 004080 163 RLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKV 202 (775)
Q Consensus 163 ~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~ 202 (775)
+|+++++.+. +|++|+|+ .|+|++|+.
T Consensus 59 ~vv~~~~~~~--~e~vVdl~-----------~~~V~~~~~ 85 (86)
T PF02727_consen 59 RVVVYDGGQS--YEAVVDLT-----------SGKVVSWKE 85 (86)
T ss_dssp EEEEEETSSS--SEEEEEEE-----------EEECSCEEE
T ss_pred EEEEEECCee--eeEEEECc-----------CCccccCcc
Confidence 9999998776 99999998 688988875
No 9
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=20.14 E-value=98 Score=31.65 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=16.3
Q ss_pred CCCceEEeec----eEEE-eeec--CCccc
Q 004080 448 FAGGVDTIEN----CVCL-HEED--HGILW 470 (775)
Q Consensus 448 ~~G~p~~~~n----aICi-hE~D--~Gilw 470 (775)
.+|+++++.- |+|| ||.| +|+||
T Consensus 118 ~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf 147 (168)
T COG0242 118 RNGKPQELEAEGLLARCIQHEIDHLNGVLF 147 (168)
T ss_pred CCCCEEEEEEcCceeEEeEeeccccCcEEe
Confidence 4577766653 7776 9999 78875
No 10
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=16.05 E-value=1.5e+03 Score=25.39 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=67.0
Q ss_pred cceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecC
Q 004080 369 EGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNF 448 (775)
Q Consensus 369 eGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~ 448 (775)
-|-.|..+.+.|+. | .+.+++.-|.+... +...+.| .| -=+|+.||.+.-|.=.. |
T Consensus 27 ~GA~i~~l~vpd~~-g--------~~~dvvlg~~~~~~-y~~~~~~-~G-a~iGr~anRI~~g~f~~------~------ 82 (342)
T PRK11055 27 WGATWLSCRVPLSD-G--------SVREVLLGCASPED-YPDQAAY-LG-ASVGRYANRIANSRFTL------D------ 82 (342)
T ss_pred cCcEEEEEEeECCC-C--------CEeeeEECCCCHHH-HhhCCCc-cC-ceeCCcCCcccCCEEEE------C------
Confidence 67788888886632 2 25578888876432 2212222 33 44788888887553222 2
Q ss_pred CCceEEee---ceEEEeeecCCccccccccCCCceeeeeeeEEEEEEeee------ecccceEEEEEEccCCcEEEEEeE
Q 004080 449 AGGVDTIE---NCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICT------VANYEYAFFWHFYQDGKIEAEVKL 519 (775)
Q Consensus 449 ~G~p~~~~---naICihE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T------VgNYDYi~~w~F~qDGtIe~ev~a 519 (775)
|+.+..+ ..-|||=-..|.-+|. |. ........++++..+. -+|++.-..|.+..++.+++++.|
T Consensus 83 -G~~y~L~~N~~~n~lHGg~~G~~~~~--W~---v~~~~~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a 156 (342)
T PRK11055 83 -GETYQLSPNQGGNQLHGGPEGFDKRR--WQ---IVNQNDRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRA 156 (342)
T ss_pred -CEEEEcccCCCCcccCCCCcccCCcE--EE---EEEccCCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEE
Confidence 2222221 1235654444442222 21 1111123456666554 357777788888878888888888
Q ss_pred eE
Q 004080 520 TG 521 (775)
Q Consensus 520 TG 521 (775)
++
T Consensus 157 ~~ 158 (342)
T PRK11055 157 TV 158 (342)
T ss_pred Ec
Confidence 74
Done!