Query 004080
Match_columns 775
No_of_seqs 177 out of 715
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sxx_A Peroxisomal primary ami 100.0 4E-189 2E-193 1615.0 66.7 635 80-760 20-669 (692)
2 3loy_A Copper amine oxidase; T 100.0 6E-186 2E-190 1580.5 69.3 621 82-752 1-633 (633)
3 1w6g_A Phenylethylamine oxidas 100.0 7E-184 2E-188 1570.3 65.9 620 81-754 6-629 (646)
4 1ksi_A Copper amine oxidase; P 100.0 2E-180 8E-185 1543.6 69.4 624 82-753 2-636 (642)
5 1spu_A Copper amine oxidase; o 100.0 5E-176 2E-180 1528.8 66.1 620 80-752 91-726 (727)
6 1w7c_A Lysyl oxidase; AMNE oxi 100.0 4E-159 1E-163 1379.1 57.9 608 78-751 14-692 (747)
7 1tu5_A Copper amine oxidase, l 100.0 1E-158 3E-163 1377.3 56.4 610 81-751 39-705 (746)
8 3hi7_A Amiloride-sensitive ami 100.0 5E-154 2E-158 1331.9 50.1 623 82-752 10-694 (731)
9 3pgb_A Putative uncharacterize 100.0 2E-152 7E-157 1320.3 51.2 628 77-751 60-736 (797)
10 1kmt_A RHO GDP-dissociation in 9.4 4.7E+02 0.016 24.6 5.9 63 333-410 33-95 (141)
No 1
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=4.4e-189 Score=1615.01 Aligned_cols=635 Identities=35% Similarity=0.626 Sum_probs=590.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCC
Q 004080 80 QTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPP 159 (775)
Q Consensus 80 ~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~ 159 (775)
...|||||||++||++|++||++++. ++.++|++|+|+||+|++|+. | + +..+ ++|+
T Consensus 20 ~~~HPLDpLs~~Ei~~a~~iv~~~~~----~~~~~F~~i~L~EP~K~~v~~---~---------~--~~~~-----~~p~ 76 (692)
T 3sxx_A 20 RPAHPLDPLSTAEIKAATNTVKSYFA----GKKISFNTVTLREPARKAYIQ---W---------K--EQGG-----PLPP 76 (692)
T ss_dssp CCSSTTSCCCHHHHHHHHHHHHHHTT----TSCEEEEEEEEECCCHHHHHH---H---------H--HSCC-----CCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC----CCCcEEEEEECCCCCHHHHHH---H---------H--hcCC-----CCCC
Confidence 35899999999999999999998765 257999999999999999983 2 1 1111 3778
Q ss_pred ceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCC
Q 004080 160 RRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIED 239 (775)
Q Consensus 160 R~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l~~~~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~ 239 (775)
|+|+|++++..++.++|++|+|+ .++|++|+.++++||+|+.|||.+||++|++||+|+++|++|||++
T Consensus 77 R~a~v~~~~~~~~~~~e~vVdl~-----------~~~v~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~ 145 (692)
T 3sxx_A 77 RLAYYVILEAGKPGVKEGLVDLA-----------SLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPA 145 (692)
T ss_dssp CEEEEEEEETTCSSEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCG
T ss_pred eEEEEEEEECCCCCEEEEEEECC-----------CCeEEEEEECCCCcCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCc
Confidence 99999999988889999999998 6899999999999999999999999999999999999999999965
Q ss_pred --CCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCce-ecCCCCCC
Q 004080 240 --MDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKL-VHLPPADP 316 (775)
Q Consensus 240 --~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~~-~p~p~~~~ 316 (775)
+++|+||||++||++.. +.++||+|++||+|.. +++|+|+|||| |+++||++++||++|++... .|+|+..
T Consensus 146 ~~~~~V~~dpw~~G~~~~~-~~~~Rl~~~~~y~r~~---~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~- 219 (692)
T 3sxx_A 146 NEMHKVYCDPWTIGYDERW-GTGKRLQQALVYYRSD---EDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHK- 219 (692)
T ss_dssp GGGGGEEEEEEECCCCTTT-TTSSCEEEEEEEECSS---TTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSC-
T ss_pred cccceEEEccccccccCCC-CCCceEEEEEEEEecC---CCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCC-
Confidence 45599999999998764 4689999999999974 36899999999 99999999999999988755 4555433
Q ss_pred CCCCCCCCcC--CCCCCC-CCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEee
Q 004080 317 LRNYTAGETR--GGVDRS-DIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLS 393 (775)
Q Consensus 317 ~~~y~~~~~~--~~~~r~-dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlS 393 (775)
..||.++.+. ++. |+ |+|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|+ .||||||+|
T Consensus 220 ~~~Y~p~~~~~~~~~-r~~d~kP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~R~V~YrlS 297 (692)
T 3sxx_A 220 HANFYPKHMIEKVGA-MRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGN-VRPIFHRIS 297 (692)
T ss_dssp CCCCSHHHHHHHHSS-CCCCCCCCEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEE
T ss_pred CCCCChHHccccCCC-CCCCCCCceecCCCCCcEEEcCCeEEecCcEEEEecCCCCceEEEEEEEcCCCc-ceeeeeeee
Confidence 3789886654 345 98 999999999999999999999999999999999999999999999998764 689999999
Q ss_pred eeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCcccccc
Q 004080 394 FVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQ 473 (775)
Q Consensus 394 l~Em~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~ 473 (775)
||||+||||||++||+||+|||+||||||.++|+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|+||||+
T Consensus 298 l~Em~VPYgdp~~p~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~d~Gil~kHt 377 (692)
T 3sxx_A 298 LSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHS 377 (692)
T ss_dssp EEEEEEEBCCCSTTGGGCEECHHHHTCTTTTBCCCTTTTTSCSSCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEE
T ss_pred hheeEEecCCCCchhhhheeeeccccCCCccccccccCCCCCCCcEEeeeEEecCCCCEEEecceEEEeeccCCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC--ceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCCCC-cCcccceecCCCccccce
Q 004080 474 DWRTG--LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGE-VRKYGTIIAPGLYAPVHQ 550 (775)
Q Consensus 474 d~r~g--~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~~-~~~yGt~V~~~v~a~~Hq 550 (775)
|||++ .++|+|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++.+++ ..+|||+|+|+++|++||
T Consensus 378 ~~r~~~~~~~v~r~r~LVvr~i~TVgNYDYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~yGt~V~~~v~a~~Hq 457 (692)
T 3sxx_A 378 DFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQ 457 (692)
T ss_dssp CGGGTTCSEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEECCTTCCCTTTEEEEETTEEEECEE
T ss_pred eccCCCceeeEEeccEEEEEEeeeccceeEEEEEEEecCCeEEEEEEEEEEEEeeeeCCCcccCCCcceecCCcccccee
Confidence 99998 899999999999999999999999999999999999999999999999998876 679999999999999999
Q ss_pred eeEEEEeeecccCCCCCCccEEEEEeeeecCC---CCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCC
Q 004080 551 HFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNR 627 (775)
Q Consensus 551 H~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~ 627 (775)
|+||||||||||| .+|+|++++++..+. +..|||+++|++++|.+++|++|+++++++++|+|+|+|++++|+
T Consensus 458 H~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~~~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~ 533 (692)
T 3sxx_A 458 HLFSLRIDPRIDG----DGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNP 533 (692)
T ss_dssp EEEEEEEEECTTS----SCBEEEEEEEEECSSCTTBTTBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCT
T ss_pred EEEEEEeccccCC----CCceEEEEEeEEccCCCCCCCCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCC
Confidence 9999999999998 699999999998764 568999999999999999999999999999999999999999999
Q ss_pred C-CCceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCC-CCChhhhc-ccCCceeeCC
Q 004080 628 T-GQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRV-GEGLATWV-EQNRSLEETD 704 (775)
Q Consensus 628 ~-G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~-~~gl~~~~-~~~esI~~eD 704 (775)
+ |+|+||||+|++++++|+.++|...+||+|++||||||||+|+|+||+|+|+||+++. .+||++|+ ++||+|+|||
T Consensus 534 ~sG~pvgYkL~p~~~~~ll~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~D 613 (692)
T 3sxx_A 534 YSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTD 613 (692)
T ss_dssp TTCSCCEEEEECCCCCCCCSCTTSHHHHHCGGGGSSEEEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBC
T ss_pred CCCccceEEEecCCCCcccCCCCchhhhhchhcccceEEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCc
Confidence 8 9999999999999988999999999999999999999999999999999999999752 27999999 8999999999
Q ss_pred eEEEEEeccccCCCCCCCCCCccceeeEEEEeCCCCCCCCCCCCCCCCCCcccccc
Q 004080 705 IVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESDLDLKDT 760 (775)
Q Consensus 705 iV~W~t~G~~HiPr~ED~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~~~~~~~~~ 760 (775)
|||||||||||+||+|||||||++++||+|||+|||++||+||+|++.+..+++++
T Consensus 614 iV~W~t~G~~HiPr~ED~PvMP~~~~gf~LrP~nFFd~NPaldvp~~~~~~~~~v~ 669 (692)
T 3sxx_A 614 ILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAK 669 (692)
T ss_dssp EEEEEEEEEEECCCGGGSSSCCCEEEEEEEEEESSSSSCTTTTSCCSEEECHHHHH
T ss_pred eEEEEecCcccCCchhcCCCCcceEEEEEEECCCcCCCCCcccCCCcccccChhhh
Confidence 99999999999999999999999999999999999999999999999988887765
No 2
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=6.4e-186 Score=1580.54 Aligned_cols=621 Identities=34% Similarity=0.578 Sum_probs=572.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 004080 82 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 161 (775)
Q Consensus 82 ~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R~ 161 (775)
.|||||||++||++|++||++++.+ .+.++|++|+|+||+|++|+.+ |..++.|. +.++|+|+
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~~------------l~~~~~g~--~~~~p~R~ 63 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKG---PERPHFIQIDRLDPPKKDMIRY------------LEAERTGK--PLPHISRM 63 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCS---SSCEEEEEEEECCCCHHHHHHH------------HHHHHHTC--CCCCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC---CCCcEEEEEECCCCCHHHHHHH------------HhhhhcCC--CCCCCCcE
Confidence 4999999999999999999987653 2579999999999999999842 22333332 12477899
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCC-CCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 004080 162 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPD-VQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (775)
Q Consensus 162 A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l~~-~~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~~ 240 (775)
|+|+++. ++.++|++|+|+ .++|++|+.+++ +||+|+.|||.+||++|++||+|+++|++|||+++
T Consensus 64 a~v~~~~--~~~~~e~vVdl~-----------~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~ 130 (633)
T 3loy_A 64 TYVYYYI--GLDFYKALVNVS-----------YGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPH 130 (633)
T ss_dssp EEEEEEE--TTEEEEEEEETT-----------TTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTT
T ss_pred EEEEEEe--CCCEEEEEEECC-----------CCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 9997766 678999999998 689999999997 89999999999999999999999999999999998
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCc------eec---C
Q 004080 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRK------LVH---L 311 (775)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~------~~p---~ 311 (775)
++|+||||++|+++ +.++||+|||||+|.. +++++|+|+|||+ |+++||++++||++|++.. .++ .
T Consensus 131 ~~V~~dpw~~G~d~---~~~~Rl~q~~~y~r~~-~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~ 205 (633)
T 3loy_A 131 VRVVCDPWMNGTDS---KEDRMLIQCYMYLASA-AHPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAW 205 (633)
T ss_dssp EEEEEEEEECCCSS---CCCSCEEEEEEEEEET-TCTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCC
T ss_pred ceEEEeccccccCC---CCCcEEEEEEEEEecC-CCCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCC
Confidence 99999999999955 3579999999999963 2578999999998 8899999999999998741 111 2
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEE
Q 004080 312 PPADPLRNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHR 391 (775)
Q Consensus 312 p~~~~~~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~Yr 391 (775)
++. ...||.++.+. +. |+|+|||+|+||||+||+|+|++|+||+|+||||||+||||+||||+|+ | |+|+||
T Consensus 206 ~~~-~~~~Y~p~~~~-~~-r~d~kp~~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~Yr 277 (633)
T 3loy_A 206 DEF-PFVEYHPDLNG-ET-IVPLKPLIVQQPEGPSFNVDGHKISWQGWEFFVIPTVREGFAIYDIHFK----G-RSVVYR 277 (633)
T ss_dssp CCC-CCCCCSTTTSC-CC-CCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEE
T ss_pred CCC-CCCCcChhHcc-cc-cCCCCCcceeCCCCCCEEEcCCccccCCcEEEEecCCCcCcEEEeeEEC----C-EEEEEE
Confidence 222 24789887654 34 9999999999999999999999999999999999999999999999996 3 789999
Q ss_pred eeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCcccc
Q 004080 392 LSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWK 471 (775)
Q Consensus 392 lSl~Em~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gilwk 471 (775)
+|||||+||||||++||+||+|||+||||+|.++|+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|++||
T Consensus 278 lSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~k 357 (633)
T 3loy_A 278 LSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQDGGLLYK 357 (633)
T ss_dssp EEEEEEEEEBCCCSTTGGGCEEEHHHHTCTTTTBCCSTTTTCSCSSEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEE
T ss_pred EEeeeEEEeCCCCCChhhhheeecccccCccccccCCccCCCCCCCcEEeeeEEecCCCCEEEecceEEEEeccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCCCCcCcccceecCCCcccccee
Q 004080 472 HQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQH 551 (775)
Q Consensus 472 H~d~r~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH 551 (775)
|++||+|.++++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++.+++..+|||+|+|+++|++|||
T Consensus 358 Ht~~r~~~~~v~r~r~LVvr~i~TVgNYdYif~w~F~~dG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH 437 (633)
T 3loy_A 358 HTNYRTNVPVIARRREFVVQTIATVANAEYMLNIIFDQAGEIRIHVRATGILSTMPLDKDVTVPWGTNVGPRVMAAYHQH 437 (633)
T ss_dssp EECTTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCCTTEEEEETTEEEECEEE
T ss_pred eccccCCceeEEEeeEEEEEEEeeccceeEEEEEEEecCCeEEEEEEEEEEEeeeecCCcccCCCcceecCCccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999987778899999999999999999
Q ss_pred eEEEEeeecccCCCCCCccEEEEEeeeecCCCC-CCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCC-C
Q 004080 552 FFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGK-NNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRT-G 629 (775)
Q Consensus 552 ~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~-~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~-G 629 (775)
+||||||||||| .+|||++.+++..+.+. .||||++|+++++.+++| ++++++++++|+|+|+|++++|++ |
T Consensus 438 ~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~nP~g~~~~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G 511 (633)
T 3loy_A 438 MLSFRIDPAVDG----YENTVVFDDVIRMEKNTKLNPYNVGFVTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISK 511 (633)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEECCSSSSSSTTSCCEEEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTC
T ss_pred EEEEEecccccC----CCCEEEEEeeeecCCCCCCCCCCcceEEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCC
Confidence 999999999998 69999999988766543 799999999999999886 789999999999999999999995 9
Q ss_pred CceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEE
Q 004080 630 QLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWY 709 (775)
Q Consensus 630 ~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~ 709 (775)
+|+||||+|+.++++|+.|+|+..+||+|++||||||||+|+|+||+|+|+||+.+ ++||++|+++||+|+||||||||
T Consensus 512 ~p~gYkl~p~~~~~ll~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~gl~~w~~~~e~i~n~DiV~W~ 590 (633)
T 3loy_A 512 KPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQT-DTGLGVWARRDENVRNDNPVVWA 590 (633)
T ss_dssp SEEEEEEECCCCCCCCSCSSSHHHHHCGGGGSSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHTTCCCCCTTBCEEEEE
T ss_pred ccceEEEccCCCCcccCCCCchhhhccchhhcceEEecCCCCccccCCCCccCCCC-CCChHHHhcCCCccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999975 57999999999999999999999
Q ss_pred EeccccCCCCCCCCCCccceeeEEEEeCCCCCCCCCCCCCCCC
Q 004080 710 VFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNE 752 (775)
Q Consensus 710 t~G~~HiPr~ED~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~ 752 (775)
||||||+||+|||||||++++||+|||+||||+||+||||+|+
T Consensus 591 t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nP~ldvp~s~ 633 (633)
T 3loy_A 591 TLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALSVPQST 633 (633)
T ss_dssp EEEEEECCCGGGCSSEEEEEEEEEEEEESSSSSCGGGGSCCCC
T ss_pred ecCcccCCCcccCCCCccceeeEEEEcCCcCCCCccccCCCCC
Confidence 9999999999999999999999999999999999999999874
No 3
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=6.9e-184 Score=1570.31 Aligned_cols=620 Identities=39% Similarity=0.680 Sum_probs=580.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCc
Q 004080 81 TSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPR 160 (775)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R 160 (775)
..|||||||++||++|++||+++.. .++.++|++|+|+||+|++ ++ ++|+|
T Consensus 6 ~~HPldpLs~~Ei~~a~~iv~~~~~---~~~~~~F~~i~L~eP~K~~---------------------g~-----~~P~R 56 (646)
T 1w6g_A 6 TASPFRLASAGEISEVQGILRTAGL---LGPEKRIAYLGVLDPARGA---------------------GS-----EAEDR 56 (646)
T ss_dssp -CCTTCCCCHHHHHHHHHHHHHTTC---CCTTEEEEEEEECCCCSCC---------------------SS-----SCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccc---CCCCcEEEEEEccCCchhh---------------------CC-----CCCCe
Confidence 4799999999999999999999765 2358999999999999954 22 26789
Q ss_pred eEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEE---eeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCC
Q 004080 161 RARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVIS---SKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGI 237 (775)
Q Consensus 161 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~---~~~l~~~~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl 237 (775)
+|+|+++++.++.++|++|+|+ .++|++ |+.++++||+++.+|+.+++++|+++|.|+++|++|||
T Consensus 57 ~A~vv~~~~~~~~~~E~vV~L~-----------~~~v~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~gl 125 (646)
T 1w6g_A 57 RFRVFIHDVSGARPQEVTVSVT-----------NGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 125 (646)
T ss_dssp EEEEEEEETTSCCCEEEEEETT-----------TTEEEEEEECCHHHHCBCCCCHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred EEEEEEEECCCCcEEEEEEECC-----------CCeEEecccceeCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCC
Confidence 9999999988889999999998 578988 99999999999999999999999999999999999999
Q ss_pred CCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCC
Q 004080 238 EDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPL 317 (775)
Q Consensus 238 ~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~~~p~p~~~~~ 317 (775)
+++.+|+| ||++||+++..+.++|++|++||+|.. +++|+|+|||+||+++||+.++||++|++.+.++.|. ..
T Consensus 126 ~~~~~v~~-pw~~g~~~~~~~~~~Rl~~~~~~~r~~---~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~--~~ 199 (646)
T 1w6g_A 126 DVSKVRVA-PLSAGVFEYAEERGRRILRGLAFVQDF---PEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA--EH 199 (646)
T ss_dssp CGGGEEEE-EEECCCCSCGGGTTSCEEEEEEEECSS---TTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC--SC
T ss_pred CCCCeeEE-eecccccCCccCCCcEEEEEEEEEecC---CCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC--CC
Confidence 98888999 999997776655689999999999874 4589999999999999999999999999876566664 23
Q ss_pred CCCCCCCcCCCCCCCCCCCceecCCCCCeeEEc-ceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeee
Q 004080 318 RNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVN-GHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVE 396 (775)
Q Consensus 318 ~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vd-g~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~E 396 (775)
.||.+..+.++. |+++|||+|+||||+||+|+ |++|+||||+||||||+||||+||||+|+|+|+ .||||||+||||
T Consensus 200 ~~y~~~~~~~~~-r~~lkP~~i~QPeGpsF~V~~G~~V~W~~W~F~vgfn~ReGlvL~dV~y~~~g~-~R~V~YrlSlsE 277 (646)
T 1w6g_A 200 GNYTDPELTGPL-RTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAE 277 (646)
T ss_dssp CCTTCHHHHCSC-CCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEE
T ss_pred CccchhhcCCCc-CCCCCCceecCCCCCceEEeCCCEEEeCCCEEEEecCCCcceEEEEEEEcCCCC-ceEEEEEeeeeE
Confidence 689877655444 99999999999999999999 999999999999999999999999999998754 589999999999
Q ss_pred EEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCccccccccC
Q 004080 397 MVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWR 476 (775)
Q Consensus 397 m~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r 476 (775)
|+||||||+++|+||+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|+|+||||+|||
T Consensus 278 m~VPYgdp~p~~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~d~GilwkH~~~r 357 (646)
T 1w6g_A 278 MVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLW 357 (646)
T ss_dssp EEEEBCCCCTTTTTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTT
T ss_pred EEEeCCCCCchhhcceeeeccCcCCcccccccccCCCCCCCCEEEeEEEEcCCCCEEEcCCEEEEeeccCCcceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCCCCcCcccceecCCCccccceeeEEEE
Q 004080 477 TGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVAR 556 (775)
Q Consensus 477 ~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~R 556 (775)
+|.++++|+|+||||+|+|||||||||+|+|||||+||++|+|||||+++++.+ +..+|||+|+|+++|++|||+|+||
T Consensus 358 ~~~~~v~r~r~LVvr~i~Tv~NYdYi~~w~F~~dG~Ie~ev~aTGil~t~~~~~-~~~~yGt~V~~~v~a~~HqH~f~~R 436 (646)
T 1w6g_A 358 SGINYTRRNRRMVISFFTTIGNADYGFYWYLYLDGTIEFEAKATGVVFTSAFPE-GGSDNISQLAPGLGAPFHQHIFSAR 436 (646)
T ss_dssp TCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCT-TCCSSEEEEETTEEEECEEEEEEEE
T ss_pred CCceeeecccEEEEEEEeeccccceEEEEEEecCCeEEEEEEEEEEEeeeecCC-ccCCCcceecCCcccccceEEEEEe
Confidence 999999999999999999999999999999999999999999999999999877 5678999999999999999999999
Q ss_pred eeecccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCCceeEEE
Q 004080 557 MDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKL 636 (775)
Q Consensus 557 lD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl 636 (775)
||||||| .+|+|++++++..+.+..|||+++|++++|.+++|.+|++++++.++|+|+|+|++++|++|+|+||||
T Consensus 437 lD~dIdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl 512 (646)
T 1w6g_A 437 LDMAIDG----FTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKL 512 (646)
T ss_dssp EEECTTS----SCBEEEEEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEE
T ss_pred ecccccC----CCCEEEEEeeEeccCCCCCCCCceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeEEE
Confidence 9999997 699999999998776678999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEEeccccC
Q 004080 637 VPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYVFGVTHI 716 (775)
Q Consensus 637 ~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t~G~~Hi 716 (775)
+|++++++|+.|+|+..+||.|++||||||||+|+|+||+|+|+||+.+ ++||++|+++||+|+|+|||||||||+||+
T Consensus 513 ~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~ 591 (646)
T 1w6g_A 513 HAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVWHTFGLTHF 591 (646)
T ss_dssp EECCCCCCCSCTTSHHHHHTGGGGSSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHHTTCCBCTTBCEEEEEEEEEEEC
T ss_pred ccCCcccccCCCCccccccccccccceEEeccCCCccccCCCCcccCCC-CCChhHHhhCCCCcccCceEEEEeCccccC
Confidence 9999999999999999999999999999999999999999999999976 469999999999999999999999999999
Q ss_pred CCCCCCCCCccceeeEEEEeCCCCCCCCCCCCCCCCCC
Q 004080 717 PRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESD 754 (775)
Q Consensus 717 Pr~ED~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~~~ 754 (775)
||+|||||||++++||+|||+|||++||+||+|++.|+
T Consensus 592 Pr~ED~PvMP~~~~~f~L~P~nFF~~nP~ldvp~~~~~ 629 (646)
T 1w6g_A 592 PRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQ 629 (646)
T ss_dssp CCGGGSSSEEEEEEEEEEEESSCSSSCTTTTCCCC---
T ss_pred CCccccCCCCCceEEEEEEecCcCCCCCCccCCCcccc
Confidence 99999999999999999999999999999999998775
No 4
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=2.3e-180 Score=1543.60 Aligned_cols=624 Identities=27% Similarity=0.491 Sum_probs=572.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 004080 82 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 161 (775)
Q Consensus 82 ~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R~ 161 (775)
.|||||||++||++|++||++++..+ ...++|++|+|+||+|++|+. | |. ..++ ++|+|+
T Consensus 2 ~HPldpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------l~-~~~~-----~~P~R~ 61 (642)
T 1ksi_A 2 QHPLDPLTKEEFLAVQTIVQNKYPIS--NNRLAFHYIGLDDPEKDHVLR---Y---------ET-HPTL-----VSIPRK 61 (642)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHHSCTT--TCCEEEEEEEECCCCHHHHHH---H---------HH-CGGG-----CCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCC--CCceEEEEEECCCCCHHHHHH---H---------Hh-hcCC-----CCCCcE
Confidence 69999999999999999999987421 247899999999999999983 2 21 2333 368999
Q ss_pred EEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCC-CCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCCC
Q 004080 162 ARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPD-VQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDM 240 (775)
Q Consensus 162 A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l~~-~~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~~ 240 (775)
|+|+++.+ +.++|++|+|+ .++|++++..+. +||+++.+|+.++++++++||.|+++|++|||+ +
T Consensus 62 A~vv~~~~--~~~~E~vV~L~-----------~~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~-~ 127 (642)
T 1ksi_A 62 IFVVAIIN--SQTHEILINLR-----------IRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLN-L 127 (642)
T ss_dssp EEEEEEET--TEEEEEEEETT-----------TTEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCC-G
T ss_pred EEEEEEeC--CeEEEEEEECC-----------CCcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCC-c
Confidence 99999854 67899999998 578887555553 499999999999999999999999999999997 6
Q ss_pred CeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCCCCC
Q 004080 241 DLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPLRNY 320 (775)
Q Consensus 241 ~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~~~p~p~~~~~~~y 320 (775)
..|+||||++|+++.. .++|++|++||++. .++|+|+||||||+++||+.++||++|++.+.+++|+.+. .+|
T Consensus 128 ~~v~~~pw~~g~~~~~--~~~Rl~~~~~~~~~----~~~n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~~-~~y 200 (642)
T 1ksi_A 128 SEIVCSSFTMGWFGEE--KNVRTVRLDCFMKE----STVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAEN-TEY 200 (642)
T ss_dssp GGEEEEEECCCCCSCS--CCCCEEEEEEEECS----SCSCGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCTT-CCC
T ss_pred cceEEecccccCCCCC--CCcEEEEEEEEEec----CCCcccccccCceEEEEECCCCEEEEEEccCCccCCCCCC-CCc
Confidence 7899999999998765 36999999999995 3589999999999999999999999999887777776442 479
Q ss_pred CCCCcCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCC-cccEEEEeeeeeEEe
Q 004080 321 TAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRG-RRPVAHRLSFVEMVV 399 (775)
Q Consensus 321 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g-~R~I~YrlSl~Em~V 399 (775)
.+....++. |+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|.++| .|+||||+|||||+|
T Consensus 201 ~~~~~~~~~-r~~lkP~~i~QPeG~sF~V~G~~V~W~~W~f~vgf~~reGlvL~dv~y~d~~~g~~r~V~YrlSl~Em~V 279 (642)
T 1ksi_A 201 QVSKQSPPF-GPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFV 279 (642)
T ss_dssp CSTTCCSCC-CCCCCCBEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred cccccCCCC-CCCCCCceecCCCCCCEEEeCcEEeeCCceEEEecCCCcccEEEEEEEecCCCCCceEEEEEeeeeeEEE
Confidence 887766555 999999999999999999999999999999999999999999999999985433 488999999999999
Q ss_pred ecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCccccccccCCC-
Q 004080 400 PYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRTG- 478 (775)
Q Consensus 400 pYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g- 478 (775)
|||||+++|+||+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|.|+||||+|||++
T Consensus 280 PYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~gilwkH~~~r~~~ 359 (642)
T 1ksi_A 280 PYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPN 359 (642)
T ss_dssp EBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBCTTCEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEECCSTT
T ss_pred eCCCCCcccccceeeeccccCccccccccccCCCCCCCCEEeeeEEecCCCCEEEcCCEEEEEeccCCcceeeccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --ceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecCCC-----CcCcccceecCCCcccccee
Q 004080 479 --LAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPG-----EVRKYGTIIAPGLYAPVHQH 551 (775)
Q Consensus 479 --~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~-----~~~~yGt~V~~~v~a~~HqH 551 (775)
.++++|+|+||||+|+|||||||||+|+|||||+||+||+|||||++.++... +..+|||+|+|+++|++|||
T Consensus 360 ~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH 439 (642)
T 1ksi_A 360 ESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDH 439 (642)
T ss_dssp CCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCEEECSCCSGGGCCSCCSEEEEETTEEEECEEE
T ss_pred ceeeeeeeccEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEecccccccccccccCCCcceecCCcccccceE
Confidence 47899999999999999999999999999999999999999999999877552 24689999999999999999
Q ss_pred eEEEEeeecccCCCCCCccEEEEEeeeecCCC-CCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCC
Q 004080 552 FFVARMDMAVDCKPGEAHNQVVEMNVKVEEPG-KNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQ 630 (775)
Q Consensus 552 ~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~-~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~ 630 (775)
+||||||||||| .+|+|++++++..+.+ ..||++++|+++++++++|.+|++++++. +|+|+|+|++++|++|+
T Consensus 440 ~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~-~r~~~i~N~~~~N~~G~ 514 (642)
T 1ksi_A 440 FYIYYLDFDIDG----THNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLA-PAELVVVNPNIKTAVGN 514 (642)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEEEECCSSCSSCSEEEEEEEEECCBGGGGCBCTTSS-CEEEEEEEEEEECTTSC
T ss_pred EEEEeeccCCCC----CCCeEEEEeeEecCCCCCCCCCcceEEEEEEEccchhhhhhccCCC-ceEEEEEcCCCcCCCCC
Confidence 999999999997 6999999998865543 57999999999999999999999999999 99999999999999999
Q ss_pred ceeEEEecCCCCCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeCCeEEEEE
Q 004080 631 LTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEETDIVLWYV 710 (775)
Q Consensus 631 p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~eDiV~W~t 710 (775)
|+||||+|++++++|+.++|+..+||+|++||||||||+|+|+||+|+|+||+++ ++|+.+|+++||+|+|+|||||||
T Consensus 515 p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~a~g~y~~qs~~-~~gl~~~~~~~~~i~~~DiV~W~t 593 (642)
T 1ksi_A 515 EVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRG-DDTLAVWTKQNREIVNKDIVMWHV 593 (642)
T ss_dssp EEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHGGGCCBCSSBCEEEEEE
T ss_pred eeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCCCccCCCCCCccCCCC-CCChhhhhhCCCccccCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999999975 579999999999999999999999
Q ss_pred eccccCCCCCCCCCCccceeeEEEEeCCCCCCCCCCCCCCCCC
Q 004080 711 FGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 753 (775)
Q Consensus 711 ~G~~HiPr~ED~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~~ 753 (775)
||+||+||+|||||||++++||+|||+|||++||+||+|++..
T Consensus 594 ~G~~H~Pr~ED~PvMp~~~~~f~L~P~nFF~~nP~ldvp~~~~ 636 (642)
T 1ksi_A 594 VGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRD 636 (642)
T ss_dssp EEEEECCCGGGSSSCCCEEEECEEEESSCSSSCTTTTCCCCCB
T ss_pred cccccCCChhhCCCCccceEEEEEEeCCCCCCCCCccCCCCcc
Confidence 9999999999999999999999999999999999999998854
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=5e-176 Score=1528.77 Aligned_cols=620 Identities=29% Similarity=0.549 Sum_probs=565.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCC
Q 004080 80 QTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPP 159 (775)
Q Consensus 80 ~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~ 159 (775)
...|||||||++||++|+++|+++.. ..+.++|.+|+|+||+|++|+. | + ..++. ++|+
T Consensus 91 ~~~HPLdpLs~~Ei~~a~~il~~~~~---~~~~~~F~~i~L~eP~K~~vl~---~---------~--~~~~~----~~p~ 149 (727)
T 1spu_A 91 KRPHPLNALTADEIKQAVEIVKASAD---FKPNTRFTEISLLPPDKEAVWA---F---------A--LENKP----VDQP 149 (727)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHTSTT---CCTTCEEEEEEEECCCHHHHHH---H---------H--HHCCC----CCCC
T ss_pred ccCCCCCcCCHHHHHHHHHHHHhccc---CCCCcEEEEEEecCCCHHHHHh---H---------H--hcCCC----CCCC
Confidence 35799999999999999999988643 2457999999999999999983 2 1 23332 2578
Q ss_pred ceEEEEEEECCCCcEEEEEEeCccccccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHcCCCC
Q 004080 160 RRARLVVYNKRSNETSIWVVELSEVHAATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIED 239 (775)
Q Consensus 160 R~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~l~~~~ppi~~~E~~~~e~~~~~~p~~~~a~~~~gl~~ 239 (775)
|+|+|+++++ +.++|++|+|+ .++|++|+.++++||+++.+|+.+++++|+++|.|+++|++|||++
T Consensus 150 R~A~vv~~~~--~~~~e~vV~l~-----------~~~v~~~~~~~~~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~ 216 (727)
T 1spu_A 150 RKADVIMLDG--KHIIEAVVDLQ-----------NNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITD 216 (727)
T ss_dssp CEEEEEEEET--TEEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCSC
T ss_pred eEEEEEEEeC--CeEEEEEEeCC-----------CCceEEEEeCCCcCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCCc
Confidence 9999999865 57999999997 5889999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccccccCCCCC--CCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCcEEEEEecCceecCCCCCCC
Q 004080 240 MDLVMVDPWCVGYHSDADA--PSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNMVVIEFEDRKLVHLPPADPL 317 (775)
Q Consensus 240 ~~~v~~dpw~~G~~~~~~~--~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~kvv~i~d~~~~p~p~~~~~ 317 (775)
+..|+||||++|+++..++ .++|++|++||++. +++|+|+|||+||+++||+.++||++|++...+++|...
T Consensus 217 ~~~v~~dpw~~g~~~~~~~~~~~~R~~~~~~~~~~----~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~~-- 290 (727)
T 1spu_A 217 AKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDV----GDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTA-- 290 (727)
T ss_dssp TTSEEEEEECCCCCTTTTCCCSSSCEEEEEEEECC----SSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCSC--
T ss_pred cceEEEccccccccCCCCCCCCCcEEEEEEEEEEC----CCCCccccCccceEEEEecccCEEEEEEcCCccccCCCC--
Confidence 9999999999998775442 47999999999843 358999999999999999999999999988776666543
Q ss_pred CCCCCCCcCCCCCCCCCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeE
Q 004080 318 RNYTAGETRGGVDRSDIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEM 397 (775)
Q Consensus 318 ~~y~~~~~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em 397 (775)
.+|.+.. +. |+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|+ .||||||+|||||
T Consensus 291 ~~y~~~~---~~-r~~lkP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~r~V~YrlSl~Em 365 (727)
T 1spu_A 291 RPFDGRD---RV-APAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGT-KRKVMYEGSLGGM 365 (727)
T ss_dssp CCSSSTT---EE-CCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEEE
T ss_pred CCccccc---cc-cCCCCCccccCCCCCCEEECCCccccCCcEEEEecCCCCceEEEEEEEcCCCc-eEEEEEEeEeeEE
Confidence 4687754 23 99999999999999999999999999999999999999999999999998764 6899999999999
Q ss_pred EeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCccccccccCC
Q 004080 398 VVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGILWKHQDWRT 477 (775)
Q Consensus 398 ~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~ 477 (775)
+||||||++||+||+|||+||||+|.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|+||||+||+.
T Consensus 366 ~VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naiCi~E~d~G~l~kH~~~~~ 445 (727)
T 1spu_A 366 IVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQ 445 (727)
T ss_dssp EEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCTTTTSCTTCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEECCTTS
T ss_pred EEeCCCCCCchhcceeeeccCcCCcccccccccCCCCCCCCEEeeeEEEcCCCCEEEeCCeEEEecccCCcceeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEEEEEeEeEEEEeeecC-----C-C--CcCcccceecCCCccccc
Q 004080 478 GLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALQ-----P-G--EVRKYGTIIAPGLYAPVH 549 (775)
Q Consensus 478 g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~-----~-~--~~~~yGt~V~~~v~a~~H 549 (775)
.+.++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++. + + +..+|||+|+|+++|++|
T Consensus 446 -~~~~~r~r~LVv~~i~Tv~NYdYi~~w~F~~dG~I~~ev~aTGil~~~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~H 524 (727)
T 1spu_A 446 -PNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTH 524 (727)
T ss_dssp -CCEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCEEECSCSSTTSTTHHHHTTTEEEEETTEEEECE
T ss_pred -CceeeeceEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCcceecCCcccccc
Confidence 467789999999999999999999999999999999999999999986432 2 1 236899999999999999
Q ss_pred eeeEEEEeeecccCCCCCCccEEEEEeeeecCCCCCCCCCcceEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCC
Q 004080 550 QHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNAFYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTG 629 (775)
Q Consensus 550 qH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G 629 (775)
||+||||||||||| .+|+|++++++..+.+..||++++|+++++.+++|.+|++++++.++|+ |+|++++|++|
T Consensus 525 qH~f~~RlD~dVdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~--i~n~~~~N~~G 598 (727)
T 1spu_A 525 QHIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMG 598 (727)
T ss_dssp EEEEEEEEEECTTS----SEEEEEEEEEEEEECCSCSSCSEEEEEEEEEECBHHHHSBCCCTTSEEE--EEEEEEECTTS
T ss_pred eeEEEEeecccccC----CCCeEEEEeeEEccCCCCCCCCceeEEEEEEccchhhhhhccCCCCcEE--EeCCCCcCCCC
Confidence 99999999999997 6999999999877766679999999999999999999999999999887 89999999999
Q ss_pred CceeEEEecC--CC----CCCCCCCchHHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCCCChhhhcccCCceeeC
Q 004080 630 QLTGYKLVPG--SN----CLPLAGSEAKVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVEQNRSLEET 703 (775)
Q Consensus 630 ~p~gYkl~p~--~~----~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~~gl~~~~~~~esI~~e 703 (775)
+|+||||+|. .+ +.+++.++|+..+||+|++||||||||+|+|+||+|+|+||+++ ++||++|+++||+|+|+
T Consensus 599 ~p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~a~g~y~~q~~~-~~gl~~~~~~~e~i~~~ 677 (727)
T 1spu_A 599 NPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNT 677 (727)
T ss_dssp CEEEEEEEEEEEESSCBCCSCSSCTTCHHHHHCGGGGCSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHHTTCCBCSSE
T ss_pred CeeeEEEecCCCCccccccccccCCcchhhhhhcccccceEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCccccC
Confidence 9999999993 32 45788999999999999999999999999999999999999975 56999999999999999
Q ss_pred CeEEEEEeccccCCCCCCCCCCccceeeEEEEeCCCCCCCCCCCCCCCC
Q 004080 704 DIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNE 752 (775)
Q Consensus 704 DiV~W~t~G~~HiPr~ED~PvMP~~~~~f~L~P~nFFd~nPaldvP~s~ 752 (775)
|||||||||+||+||+|||||||++++||+|||+||||+||+||+|++.
T Consensus 678 DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nPaldvp~~~ 726 (727)
T 1spu_A 678 DAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALKKD 726 (727)
T ss_dssp EEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEEESSSSSCTTSCCBC--
T ss_pred CcEEEEecccccCCChhhCCCCcccEEEEEEEeCCCCCCCCCcCCCCCC
Confidence 9999999999999999999999999999999999999999999999874
No 6
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=3.9e-159 Score=1379.07 Aligned_cols=608 Identities=20% Similarity=0.325 Sum_probs=533.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCC-CCce---EEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCC
Q 004080 78 RAQTSHPLDPLSAAEISVAVATVRAAGATPEV-RDSM---RFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPII 153 (775)
Q Consensus 78 ~~~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~-~~~~---~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~ 153 (775)
.....|||||||++||++|+++|+++...... ...+ .|..|+|+||+|.+|+. +++++++
T Consensus 14 ~~~~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~--------------~Ld~~g~-- 77 (747)
T 1w7c_A 14 EAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALT--------------YLDEDGD-- 77 (747)
T ss_dssp CCSSCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHH--------------HHHSCCC--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHh--------------HhhCCCC--
Confidence 34458999999999999999999987211101 1234 68899999999999983 2456553
Q ss_pred CCCCCCceEEEEEEECCC--CcEEEEEEe-CccccccccCCcccceEEEeeecC---C----CCC----CCCHHHHHHHH
Q 004080 154 PTKLPPRRARLVVYNKRS--NETSIWVVE-LSEVHAATRGGHHRGKVISSKVVP---D----VQP----PMDAVEYAECE 219 (775)
Q Consensus 154 ~~~~P~R~A~vv~~~~~~--~~~~e~iV~-L~~~~~~~~~~~~~~~v~~~~~l~---~----~~p----pi~~~E~~~~e 219 (775)
+|+|+|+|+++++++ ..++|++|+ |+ .+++++++.++ + .+| +|+.+|+.+++
T Consensus 78 ---~P~R~A~vv~~~~~~~~~~~~E~vV~PL~-----------~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~~e 143 (747)
T 1w7c_A 78 ---LPPRNARTVVYFGEGEEGYFEELKVGPLP-----------VSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKS 143 (747)
T ss_dssp ---CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------CCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHHHH
T ss_pred ---CCCceEEEEEEeCCCCCCceEEEEEcCCC-----------CCcEEEEEeccccCCCCcccCCcccCCCCHHHHHHHH
Confidence 689999999998854 789999998 98 46677787773 2 346 99999999999
Q ss_pred HHHhcChhHHHHH------HHcC-CCCCCeEEEeccccccc--CCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeE
Q 004080 220 AVVKDFPPFREAM------KKRG-IEDMDLVMVDPWCVGYH--SDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIH 290 (775)
Q Consensus 220 ~~~~~~p~~~~a~------~~~g-l~~~~~v~~dpw~~G~~--~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~ 290 (775)
++|+ .+++++ +++| ++.++ +++|++|.. +. +.++|++|++|| |.. .+ +|+|+||| ||+
T Consensus 144 ~~~~---~~~~~~~~~~l~~~~g~~~~~~---l~~w~~~~~~~~~--~~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~ 210 (747)
T 1w7c_A 144 SFLN---KNLNTTIMRDVLEGLIGVPYED---MGCHSAAPQLHDP--ATGATVDYGTCN-INT--EN-DAENLVPT-GFF 210 (747)
T ss_dssp HHHH---HHHTSHHHHHHHHHHHSSCGGG---EEEEECSSCEECT--TTCCEEEEEEEE-ECC--SS-SCGGGCEE-EEE
T ss_pred HHHH---HHHHHHhhccchhhcCCcccce---eeeecccCCcCCC--CCCceEEEEEEE-Eec--CC-CCccccce-eeE
Confidence 9999 566655 6788 76654 889998864 32 257899999996 432 23 79999999 799
Q ss_pred EEEecC-----CcEEEEEecCc-----------------ee---cCCCCCCCCCCC---CCCcC-CC-CCCCCCCCceec
Q 004080 291 VLVDMQ-----NMVVIEFEDRK-----------------LV---HLPPADPLRNYT---AGETR-GG-VDRSDIKPLQIV 340 (775)
Q Consensus 291 ~~vD~~-----~~kvv~i~d~~-----------------~~---p~p~~~~~~~y~---~~~~~-~~-~~r~dlkPl~i~ 340 (775)
++||++ ++||++|++.+ .+ ++| ..+|. +..++ ++ ..|+++|||+|+
T Consensus 211 ~~vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~~~~g~v~~~~~p----~~~~~~~~~~~~~~g~~~~r~~lkp~~i~ 286 (747)
T 1w7c_A 211 FKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKID----VDNLDWTVIQRNDSAPVRHLDDRKSPRLV 286 (747)
T ss_dssp EEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHHSTTCCCCCCCC----TTCCGGGCCSCCTTSCCCTTTTSCCCCCC
T ss_pred EEEeCCCCCcccCEEEEEEECCcccCchhhhhhhhcccCcccccccC----CCCCcccchhhcccCCCCcccCCCCCccc
Confidence 999997 57999986542 11 222 12332 22322 21 248999999999
Q ss_pred CCCCCeeEEccee--ecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCC
Q 004080 341 QPEGPSFRVNGHF--VEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGE 418 (775)
Q Consensus 341 QPeG~sF~Vdg~~--V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~ge 418 (775)
||||+||+|+|++ |+||+|+||||||+||||+||||+|+ | |+|+||+|||||+||||||+++|++++|||.|
T Consensus 287 QPeG~sF~v~g~~~yV~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~g- 360 (747)
T 1w7c_A 287 EPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFK----G-ERIVYELSLQELIAEYGSDDPFNQHTFYSDIS- 360 (747)
T ss_dssp CTTCCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSTTGGGCEEEHHH-
T ss_pred CCCCCCEEEeCCccceeccCCeEEEecCCCCceEEEeeeEC----C-EEEEEEEEeeeEEeccCCCCchhheeeeeccc-
Confidence 9999999999999 99999999999999999999999996 3 78999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCeeEeceeeecCCCceEEeeceEEEeeecCCc-cccccccCCCceeeeeeeEEEEEEeeeec
Q 004080 419 DGLGKNAHSLKKGCDCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQDWRTGLAEVRRSRRLSVSFICTVA 497 (775)
Q Consensus 419 yG~G~~a~~L~~G~DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d~r~g~~~v~r~r~LVvr~I~TVg 497 (775)
||+|. ||+|++||||||+|+|||++++ .+|+|++++|||||||+|+|+ ||||+|+ +.++++|+|+||||+|+|||
T Consensus 361 yG~G~-a~~L~~GcDCpg~i~Y~D~~~~-~~G~p~~~~naiCihE~d~G~pl~kH~~~--~~~~v~r~r~LVvr~i~TVg 436 (747)
T 1w7c_A 361 YGVGN-RFSLVPGYDCPSTAGYFTTDTF-EYDEFYNRTLSYCVFENQEDYSLLRHTGA--SYSAITQNPTLNVRFISTIG 436 (747)
T ss_dssp HCSSS-SCCCCBTTTBCTTCEEEEEEEE-ETTEEEEEEEEEEEEEEECSSCSEEEEET--TEEEEECCEEEEEEEEECCC
T ss_pred cCccc-ccccccCCCCCCCCEEeeeEEe-cCCCeEEcCceEEEEEEeCCeeeEEeccC--CcceeeeCceEEEEEEEecc
Confidence 99999 9999999999999999999999 999999999999999999998 9999999 78999999999999999999
Q ss_pred ccceEEEEEEccCCcEEEEEeEeEEEEeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEEee
Q 004080 498 NYEYAFFWHFYQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNV 577 (775)
Q Consensus 498 NYDYi~~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~ 577 (775)
||||||+|+|||||+||++|+|||||++.++.+++..+|||+|+|+++|++|||+||||||||||| .+|+|+++++
T Consensus 437 NYdYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~ 512 (747)
T 1w7c_A 437 NADYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGG----TKNRASQYVM 512 (747)
T ss_dssp C-CEEEEEEECTTSCEEEEEEECBCCCCEECCTTTCGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEE
T ss_pred ccceEEEEEEecCCeEEEEEEeeEEEeccccCCCCcCCCcceecCCcccCccceEEEEEeccccCC----CCCEEEEEee
Confidence 999999999999999999999999999999988766899999999999999999999999999997 6999999999
Q ss_pred eecCCCCCCCCCc-----ceEEEEEEeehHHhhhhccC-CCCCeEEEEeeCCCcCCCCCceeEEEecCCC-CCCCCCCch
Q 004080 578 KVEEPGKNNVHNN-----AFYAEEELLKSELQAMRDCN-PLTARHWIIRNTRTVNRTGQLTGYKLVPGSN-CLPLAGSEA 650 (775)
Q Consensus 578 ~~~~~~~~np~~~-----~~~~~~t~l~~E~~a~~~~~-~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~-~~~l~~~~s 650 (775)
+..+.. |||++ +|++++|.+++|.+|+++++ ..++|+| |+|++++|++|+|+||||+|+++ +++|+.++|
T Consensus 513 ~~~~~~--np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~~r~~-ivN~~~~N~~G~p~gYkl~p~~~~~~~l~~~~s 589 (747)
T 1w7c_A 513 KDVDVE--YPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILL-IESAEETNSFGNPRAYNIMPGGGGVHRIVKNSR 589 (747)
T ss_dssp EEEEEE--CTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEE-EEEEEEECTTSCEEEEEEEECTTCCCCSCSSCT
T ss_pred EEcccC--CCCCcccccceeEEEEEEccchhhhhhcCCCCCCceEE-EeCCCccCCCCCcceEEEecCCCCcccccCCCc
Confidence 876643 99999 89999999999999999999 5779999 99999999999999999999998 889999999
Q ss_pred HHhhhhhccccceEEeecCCCCcCCCCCCCCCCCCCC--CChhhhcccCCceeeCCeEEEEEeccccCCCCCCCCCC--c
Q 004080 651 KVLRRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVG--EGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVM--P 726 (775)
Q Consensus 651 ~~~~ra~fa~~~lwVT~y~d~E~~asg~y~nq~~~~~--~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~PvM--P 726 (775)
+..+||+|++||||||||+|+|+||+|+| ||+.+.+ .+|++|+ +||+|+|+|||||||||+||+||+|||||| |
T Consensus 590 ~~~~ra~fa~~~lwVT~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiVlW~t~G~~HiPr~ED~PvM~tP 667 (747)
T 1w7c_A 590 SGPETQNWARSNLFLTKHKDTELRSSTAL-NTNALYDPPVNFNAFL-DDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFS 667 (747)
T ss_dssp TCSSSCGGGGSSEEEEECCTTCCCSCCTT-CTTCSSSCSCCGGGGC-SCCBCTTEEEEEEEEEEEEECCCGGGSSCBCSS
T ss_pred hhhhcchhccCcEEEecCCCCccCCCCCc-cccCCCCCCcchhhhh-CCCccccCceEEEEecccccCCChhhcCCcCCC
Confidence 99999999999999999999999999999 7765422 4699999 999999999999999999999999999999 8
Q ss_pred cceeeEEEEeCCCCCCCCCCCCCCC
Q 004080 727 VDRIGFMLMPHGFFNCSPAVDVPPN 751 (775)
Q Consensus 727 ~~~~~f~L~P~nFFd~nPaldvP~s 751 (775)
++++||+|||+|||++||+||+|++
T Consensus 668 ~~~~gf~LrP~nFF~~nP~ldvp~~ 692 (747)
T 1w7c_A 668 TAHASFMLTPFNYFDSENSRDTTQQ 692 (747)
T ss_dssp SSEEEEEEEEESSSSSCTTTTCSSE
T ss_pred cceEEEEEEeCCcCCCCCCccCCCc
Confidence 8999999999999999999999987
No 7
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=9.9e-159 Score=1377.30 Aligned_cols=610 Identities=22% Similarity=0.290 Sum_probs=509.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC---CCCC---CCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCC
Q 004080 81 TSHPLDPLSAAEISVAVATVRAAG---ATPE---VRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIP 154 (775)
Q Consensus 81 ~~HPLDpLs~~EI~~a~~~v~~~~---~~~~---~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~ 154 (775)
..|||||||++||+++.++|+++. .... ...+..|..|+|+||+|.+|+. +++++++
T Consensus 39 ~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn~i~~IeL~~P~K~~vL~--------------~Ld~~~~--- 101 (746)
T 1tu5_A 39 QSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAALA--------------HLDRGSP--- 101 (746)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSEEEEEEEEECCCHHHHHH--------------HHHHCCC---
T ss_pred CCCcCCCCCHHHHHHHHHHHhccCccCccccccCCccccEEEEEECCCCCHHHhhh--------------hhcCCCC---
Confidence 479999999999999999998864 1110 0012456679999999999983 2455553
Q ss_pred CCCCCceEEEEEEECCC--CcEEEEEEe-CccccccccCCcccceEEEeeec-----CCCCC----CCCHHHHHHHHHHH
Q 004080 155 TKLPPRRARLVVYNKRS--NETSIWVVE-LSEVHAATRGGHHRGKVISSKVV-----PDVQP----PMDAVEYAECEAVV 222 (775)
Q Consensus 155 ~~~P~R~A~vv~~~~~~--~~~~e~iV~-L~~~~~~~~~~~~~~~v~~~~~l-----~~~~p----pi~~~E~~~~e~~~ 222 (775)
+|+|+|+|+++++++ ..++|++|+ |+ .+++ ++.+ .+.+| +|+.+|+.+++++|
T Consensus 102 --~P~R~A~vv~~~~~~~~~~v~E~vV~PL~-----------~~~~--~~~~~~~~~~~~~p~~~r~i~~~E~~~~e~~~ 166 (746)
T 1tu5_A 102 --PPAREALAIVFFGGQPQPNVTELVVGPLP-----------QPSY--MRDVTVERHGGPLPYYRRPVLLREYLDIDQMI 166 (746)
T ss_dssp --CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------SCCE--EEECHHHHHSSCEEGGGSCCCHHHHHHHHHHH
T ss_pred --CCCccEEEEEEeCCCCCCceEEEEecCCC-----------CCcE--EEEcccCCCCCcCCcccCCCCHHHHHHHHHHH
Confidence 789999999999855 789999998 98 3443 3444 23455 99999999999999
Q ss_pred hcChhHHHHHHHcCC---CCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecC---
Q 004080 223 KDFPPFREAMKKRGI---EDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQ--- 296 (775)
Q Consensus 223 ~~~p~~~~a~~~~gl---~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~--- 296 (775)
+++|.++++++++|+ ++.. +|+++|..|..+.. .++|++|++|| |.. .+ +|+|+||| ||+++||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~-v~l~~~~~~p~~~~--~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~~~vD~~~~D 238 (746)
T 1tu5_A 167 FNRELPQAAGVLHHCCSYKQGG-QKLLTMNSAPRGVQ--SGDRSTWFGIY-YNI--TK-GGPYLHPV-GLELLVDHKALD 238 (746)
T ss_dssp HHTTGGGGHHHHHHHHCTTTTC-CCEEEECCSSCSSS--TTCCEEEEEEE-ECC--SS-SCGGGSEE-EEEEEEECCSSS
T ss_pred HHCHHHHHHHHHhcCCCcccCC-EEEeCccccCCcCC--CCcEEEEEEEE-Eec--CC-CCccccce-eeEEEEeCCCCC
Confidence 999999999998664 5555 88999976654432 46899999986 432 12 79999999 799999997
Q ss_pred --CcEEEEEecCc-ee----------------cCCCCCCCCCCCCCC--cCCCCCCCCCCCceecCCCCCeeEEcceeec
Q 004080 297 --NMVVIEFEDRK-LV----------------HLPPADPLRNYTAGE--TRGGVDRSDIKPLQIVQPEGPSFRVNGHFVE 355 (775)
Q Consensus 297 --~~kvv~i~d~~-~~----------------p~p~~~~~~~y~~~~--~~~~~~r~dlkPl~i~QPeG~sF~Vdg~~V~ 355 (775)
++||++|++.+ .. +++.. .+|.+.. .+....|.++ ||+|+||||+||+|+|++|+
T Consensus 239 ~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~~~~p---~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v~g~~V~ 314 (746)
T 1tu5_A 239 PADWTVQKVFFQGRYYENLAQLEEQFEAGQVNVVVIP---DDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSVQGNRVA 314 (746)
T ss_dssp GGGCEEEEEEETTEEESSHHHHHHHHHTTCCCCCCCC---C-----------------------------CEEEETTEEE
T ss_pred cccCEEEEEEECCCccCchhhhhcccccCCcccccCc---cccCcccccccccccCCCC-CcceeCCCCCCEEecCCccc
Confidence 69999997542 00 11110 1254433 3222125565 99999999999999999999
Q ss_pred ccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCC
Q 004080 356 WQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCL 435 (775)
Q Consensus 356 Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCp 435 (775)
||+|+||||||+||||+||||+|+ | |+|+||+|||||+||||||++++.+++|||. +||+|.+||+|++|||||
T Consensus 315 W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~-~yG~G~~a~~L~~GcDCp 388 (746)
T 1tu5_A 315 SSLWTFSFGLGAFSGPRVFDVRFQ----G-ERLAYEISLQEAGAVYGGNTPAAMLTRYMDS-GFGMGYFATPLIRGVDCP 388 (746)
T ss_dssp ESSEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSHHHHHCEEEGG-GTCTTTTBCCCCBTTTBC
T ss_pred CCCcEEEEecCCCCceEEEeeEEC----C-eeEEEEEEeeeEEeecCCCCchhhcceeecc-ccCcccccccCccCCCCC
Confidence 999999999999999999999996 3 7899999999999999999666666666665 599999999999999999
Q ss_pred CCeeEeceeeecCCCceEEeeceEEEeeecCCc-cccccc--cCCCceeeeeeeEEEEEEeeeecccceEEEEEEccCCc
Q 004080 436 GYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQD--WRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGK 512 (775)
Q Consensus 436 g~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d--~r~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGt 512 (775)
|+|+|||+++++.+|+|++++|||||||+|+|+ ||||+| |+ +.++++|+|+||||+|+|||||||||+|+|||||+
T Consensus 389 g~i~Y~D~~~~~~~G~p~~~~naiCihE~d~G~~lwkH~~~~~~-~~~~v~r~r~LVvr~i~TVgNYdYi~~w~F~qdG~ 467 (746)
T 1tu5_A 389 YLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRRHHSDFLS-HYFGGVAQTVLVFRSVSTMLNADYVWDMVFYPNGA 467 (746)
T ss_dssp TTSEEEEEEEEESSSSCEEEEEEEEEEEEEEEEEEEECCCSTTC-CCCCEEEEEEEEEEEEEEETTEEEEEEEEECTTSC
T ss_pred CCCEEEeeEEecCCCCEEEcCCeEEEEEeeCCeeeeeecccccC-CceeeecccEEEEEEEEeecccceEEEEEEecCCc
Confidence 999999999999999999999999999999998 899999 77 77899999999999999999999999999999999
Q ss_pred EEEEEeEeEEEEeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeeecCCCCCCCCCcc-
Q 004080 513 IEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNVHNNA- 591 (775)
Q Consensus 513 Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~- 591 (775)
||++|+|||||++.++.+++ .+|||+|+++++|++|||+|+||||||||| .+|+|++++++..+.. |||+++
T Consensus 468 Ie~ev~aTGil~t~~~~~~~-~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~--np~~~~~ 540 (746)
T 1tu5_A 468 IEVKLHATGYISSAFLFGAA-RRYGNQVGEHTLGPVHTHSAHYKVDLDVGG----LENWVWAEDMAFVPTA--IPWSPEH 540 (746)
T ss_dssp EEEEEEEEECCCCEECCTTG-GGGEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEEE--ETTEEEE
T ss_pred EEEEEEecceEeeeecCCCC-CCCcceecCCccccccceEEEEEecccccC----CCCEEEEEeeEEcccC--CCCCccc
Confidence 99999999999999987654 789999999999999999999999999997 6999999999876643 999999
Q ss_pred ----eEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCCceeEEEecCCCCCCCCCCchHHhhhhhccccceEEee
Q 004080 592 ----FYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHNLWVTP 667 (775)
Q Consensus 592 ----~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~ 667 (775)
|++++|.+++|.+|++++++.++|+| |+|++++|++|+|+||||+|++++.+|+.++|...+||+|++|||||||
T Consensus 541 ~~~~~~~~~t~~~tE~~a~~~~~~~~~r~~-ivn~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~ 619 (746)
T 1tu5_A 541 QIQRLQVTRKQLETEEQAAFPLGGASPRYL-YLASKQSNKWGHPRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAITQ 619 (746)
T ss_dssp EEEEEEEEEEECCBGGGGEEETTSCCCSEE-EEEEEEECTTSCEEEEEEEEECBCCCCCCTTSTTGGGGGGGGEEEEEEE
T ss_pred ccceeEEEEEEeeehhhhccccCCCCceEE-EeCCCCcCCCCCcceEEECcCCcccccCCCcchhhccccccccceEEec
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCCCCCCCCCCC--CChhhhcccCCceeeCCeEEEEEeccccCCCCCCCCCC--ccceeeEEEEeCCCCCCC
Q 004080 668 YAHDEMYPGGEFPNQNPRVG--EGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVM--PVDRIGFMLMPHGFFNCS 743 (775)
Q Consensus 668 y~d~E~~asg~y~nq~~~~~--~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~PvM--P~~~~~f~L~P~nFFd~n 743 (775)
|+|+|+||+|+| ||+.+.+ .+|++|+ +||+|+|+|||||||||+||+||+|||||| |++++||+|||+|||++|
T Consensus 620 y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiV~W~t~G~~HiPr~ED~PvM~tp~~~~gf~LrP~nFF~~n 697 (746)
T 1tu5_A 620 RKETEPSSSSVF-NQNDPWTPTVDFSDFI-NNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQE 697 (746)
T ss_dssp CCTTCCCSSCTT-TTTCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCCCSCCEEEEEEEESSSSSS
T ss_pred cCCCcccCCccc-cccCCCCCCccHhhhc-CCCCccCCceEEEEecccccCCChhccCccCCCccEEEEEEEeCCCCCCC
Confidence 999999999999 6664322 4689999 999999999999999999999999999999 889999999999999999
Q ss_pred CCCCCCCC
Q 004080 744 PAVDVPPN 751 (775)
Q Consensus 744 PaldvP~s 751 (775)
|+||+|++
T Consensus 698 P~ld~p~~ 705 (746)
T 1tu5_A 698 PSMDSADS 705 (746)
T ss_dssp CCCC----
T ss_pred CcccCCCc
Confidence 99999998
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=5.5e-154 Score=1331.90 Aligned_cols=623 Identities=23% Similarity=0.332 Sum_probs=529.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCCCCCce
Q 004080 82 SHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTKLPPRR 161 (775)
Q Consensus 82 ~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~~P~R~ 161 (775)
.-++..||++|++++.+.|.+.. ++.+.......|.||.|+++|++ +|+|+++|.+++++++ +|+|+
T Consensus 10 ~~vf~dLs~~E~~~V~~~L~~~~-------~l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~-----~P~R~ 76 (731)
T 3hi7_A 10 AGVFSDLSNQELKAVHSFLWSKK-------ELRLQPSSTTTMAKNTVFLIEML-LPKKYHVLRFLDKGER-----HPVRE 76 (731)
T ss_dssp GGGGCCCCHHHHHHHHHHHHTCG-------GGCBCCTTSSCSSSEEEEEEEEE-CCCHHHHHHHHHHCCC-----CCCCE
T ss_pred CCccccCCHHHHHHHHHHHhcCC-------CCCCcccccCCccCCeEEEEEec-CCCchhhhhhhcCCCC-----CCCcc
Confidence 34699999999999999998752 24444445667788888888876 7888888888998875 78999
Q ss_pred EEEEEEECCCC--cEEEEEE-eCcccc----ccccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHhc-----ChhHH
Q 004080 162 ARLVVYNKRSN--ETSIWVV-ELSEVH----AATRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVKD-----FPPFR 229 (775)
Q Consensus 162 A~vv~~~~~~~--~~~e~iV-~L~~~~----~~~~~~~~~~~v~~~~~l~~~~ppi~~~E~~~~e~~~~~-----~p~~~ 229 (775)
|+|+|+++++. .+.|++| +|+... +.+|+++ .+|+..+|++..|+.++.+++++ +..++
T Consensus 77 A~vvi~fG~~~~P~v~Ey~VGPLP~p~~~~~l~~~~~~---------~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~ 147 (731)
T 3hi7_A 77 ARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGY---------QSSWASRPISTAEYALLYHTLQEATKPLHQFFL 147 (731)
T ss_dssp EEEEEEECSSSSCEEEEEEEECSSSCCEEEEESCCTTC---------CCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHH
T ss_pred eEEEEEcCCCCCCeeEEEEEcCCCCCCeeeecccCCCC---------cCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999876 6999999 998410 1112211 34555689999899998888876 22333
Q ss_pred HHH-HHc-CCCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCc-----EEEE
Q 004080 230 EAM-KKR-GIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNM-----VVIE 302 (775)
Q Consensus 230 ~a~-~~~-gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~-----kvv~ 302 (775)
+.+ ..+ +|++.|+++.+.-|.|+.++ +|. .|+.|+|. .+++|.||+ ||+++||+.+. +|.+
T Consensus 148 ~~~~~~~~~~~~~cL~~~~~~P~~~~sg-----~r~-~W~~~~~~-----~~g~~l~P~-gl~~~vDh~~~Dps~W~v~~ 215 (731)
T 3hi7_A 148 NTTGFSFQDCHDRCLAFTDVAPRGVASG-----QRR-SWLIIQRY-----VEGYFLHPT-GLELLVDHGSTDAGHWAVEQ 215 (731)
T ss_dssp HHHSCBSSSCSSSBEEEEECSSCSSSTT-----CCE-EEEEEEEC-----STTGGGCEE-EEEEEEECCSSSGGGCEEEE
T ss_pred HHhCceecCCCCCEEeeecCCCCccCCC-----CEE-Eehheecc-----CCCceeecc-ceEEEEecCCCChHHcEEEE
Confidence 333 111 35667888888888887543 365 78999987 467899999 89999999998 4555
Q ss_pred Ee-----------------cCceecC--CCCCCCC----------CCCCCCcCCCC-CCCCCCCceecCCCCCeeEEcce
Q 004080 303 FE-----------------DRKLVHL--PPADPLR----------NYTAGETRGGV-DRSDIKPLQIVQPEGPSFRVNGH 352 (775)
Q Consensus 303 i~-----------------d~~~~p~--p~~~~~~----------~y~~~~~~~~~-~r~dlkPl~i~QPeG~sF~Vdg~ 352 (775)
|- ++.+..+ +...... .|.....++.+ .++++|||+|+||||+||+|+|+
T Consensus 216 v~Yng~~y~s~eel~~~y~~g~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~ 295 (731)
T 3hi7_A 216 VWYNGKFYGSPEELARKYADGEVDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGN 295 (731)
T ss_dssp EEETTEECSSHHHHHHHHHTTCCCCCCCCCCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETT
T ss_pred EEECCEecCCHHHHHHHHhCCCeeEeccCCCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCC
Confidence 42 2322222 2111101 14333334322 37899999999999999999999
Q ss_pred eecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCC
Q 004080 353 FVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGC 432 (775)
Q Consensus 353 ~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~ 432 (775)
+|+||+|+||||||+||||+||||+|+| |+|+||+|||||+||||||++++++|+|||+| ||||.+||+|++||
T Consensus 296 ~V~W~~W~F~vgfn~reGlvL~dV~y~g-----r~v~YrlSlsEm~VpYgdp~p~~~~k~~fD~G-yG~G~~an~L~lGc 369 (731)
T 3hi7_A 296 AVLYGGWSFAFRLRSSSGLQVLNVHFGG-----ERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGI 369 (731)
T ss_dssp EEEEBTEEEEEEEETTTEEEEEEEEETT-----EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-GTGGGCCCCCCBTT
T ss_pred EEEecCcEEEEecCCCCCcEEEeEEECC-----eeEEEEeeeeeeEEccCCCCCccccceeeecC-cCccccccccccCC
Confidence 9999999999999999999999999973 78999999999999999999999999999999 99999999999999
Q ss_pred CCCCCeeEeceeeecCCCceEEeeceEEEeeecCCc-ccccc--ccCCCc--eeeeeeeEEEEEEeeeecccceEEEEEE
Q 004080 433 DCLGYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQ--DWRTGL--AEVRRSRRLSVSFICTVANYEYAFFWHF 507 (775)
Q Consensus 433 DCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~--d~r~g~--~~v~r~r~LVvr~I~TVgNYDYi~~w~F 507 (775)
||||+|+|||+++.+.+|+|++++|||||||+|+|+ +|||+ +|+++. .+++|+|+||||+|+|||||||||+|+|
T Consensus 370 DCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~~kHtd~~~r~~~~~~~~~r~r~LVvr~I~TVgNYDYif~w~F 449 (731)
T 3hi7_A 370 DCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNADYIWDFIF 449 (731)
T ss_dssp TBCTTSEEEEEEEEESCSSCEEEEEEEEEEEEECSSCSEEEEEECSSSSEEEEEEECCEEEEEEEEECSSSEEEEEEEEE
T ss_pred CCCCCCEEEeeEEecCCCCEEecCCEEEEEEeeCCeeEEEecccccCCccceeecccccEEEEEEeeecccccEEEEEEE
Confidence 999999999999999999999999999999999998 78996 488874 4799999999999999999999999999
Q ss_pred ccCCcEEEEEeEeEEEEeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeeecCCCCCCC
Q 004080 508 YQDGKIEAEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEPGKNNV 587 (775)
Q Consensus 508 ~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np 587 (775)
||||+||+||+|||||++.++.++ ..+|||+|+|+++|++|||+||||||||||| .+|+|++++++.++. .||
T Consensus 450 ~qdGsIe~eVraTGilst~~~~~~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~--~nP 522 (731)
T 3hi7_A 450 YPNGVMEAKMHATGYVHATFYTPE-GLRHGTRLHTHLIGNIHTHLVHYRVDLDVAG----TKNSFQTLQMKLENI--TNP 522 (731)
T ss_dssp CTTSCEEEEEEEEECCCEEECCGG-GGGSEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--ECT
T ss_pred ecCCeEEEEEEEEEEEeecccCCC-CCCCcceecCCcccccceeEEEEEeccccCC----CCCEEEEEeceecCC--CCC
Confidence 999999999999999999998764 4689999999999999999999999999997 699999999987664 578
Q ss_pred CCcc-----eEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCCceeEEEecCCCCCCCCCCchHHhhhhhccccc
Q 004080 588 HNNA-----FYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKVLRRAAFLKHN 662 (775)
Q Consensus 588 ~~~~-----~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~ 662 (775)
|+++ ++++++++++|.+|+++++++++|+|+|+|+ ++|++|+|+||||+|++.+..++.++|...+||+||+||
T Consensus 523 ~~~~~~~~~~~~~~t~l~tE~ea~~~~~~~~~R~~~i~N~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~ 601 (731)
T 3hi7_A 523 WSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYP 601 (731)
T ss_dssp TCTTSEEEEEEEEEEEECBGGGGCBCTTSCCCSEEEEEEE-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCS
T ss_pred CCCCccceeEEEEEEEccchhhhhhccCCCCceEEEEeCC-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccc
Confidence 8876 5899999999999999999999999999999 889999999999999876666666889888999999999
Q ss_pred eEEeecCCCCcCCCCCCCCCCCCC-CCChhhhcccCCceeeCCeEEEEEeccccCCCCCCCCCC--ccceeeEEEEeCCC
Q 004080 663 LWVTPYAHDEMYPGGEFPNQNPRV-GEGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPVM--PVDRIGFMLMPHGF 739 (775)
Q Consensus 663 lwVT~y~d~E~~asg~y~nq~~~~-~~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~PvM--P~~~~~f~L~P~nF 739 (775)
||||||+|+|+||+|+|++|++.. .+||++|+++||+|+|||||||||||+||+||+|||||| |++++||+|||+||
T Consensus 602 lwVT~y~d~E~~aag~y~~~s~~~~~~gl~~w~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMptp~e~~~f~LrP~nF 681 (731)
T 3hi7_A 602 LAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNF 681 (731)
T ss_dssp EEEEECCGGGSCSCCTTTTTCSSSCSCCTTHHHHTCCBCSSEEEEEEEEEEEEECCCGGGSSCBCSTTCEEEEEEEEESS
T ss_pred eEEecCCCCccCCCccccccCCCCCCCCHHHHhhCCCceecCceEEEEecccccCCChhhcCccccccceeEEEEEccCC
Confidence 999999999999999997776642 258999999999999999999999999999999999999 66999999999999
Q ss_pred CCCCCCCCCCCCC
Q 004080 740 FNCSPAVDVPPNE 752 (775)
Q Consensus 740 Fd~nPaldvP~s~ 752 (775)
||+||+||++++.
T Consensus 682 Fd~nPalds~~~v 694 (731)
T 3hi7_A 682 FPEDPSLASRDTV 694 (731)
T ss_dssp SSSCGGGGCTTCE
T ss_pred CCCCccccCcceE
Confidence 9999999999863
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=2.1e-152 Score=1320.28 Aligned_cols=628 Identities=20% Similarity=0.307 Sum_probs=526.7
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCccccCCCCCCCCCC
Q 004080 77 VRAQTSHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVRVEPDKQVVALADAYFFPPFQPSLIPRTKGGPIIPTK 156 (775)
Q Consensus 77 ~~~~~~HPLDpLs~~EI~~a~~~v~~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~~~~ 156 (775)
..+.-..++..||++|++++.+.|.+... +.+....-..|.||.|+++|++ +|+|+++|.+++++++
T Consensus 60 ~~ap~~~vfadLs~~E~~aV~~~L~~~~~-------l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~----- 126 (797)
T 3pgb_A 60 IKAPKENVWYGLTDDETADVAKWLFGRPE-------LNLTTTENAGEWDNTIALIELH-RPNKSEAIPYLDGSGP----- 126 (797)
T ss_dssp CCCSSCCSSSCCCHHHHHHHHHHHHTCTT-------TCCCCTTTCCSSSEEEEEEEEE-CCCHHHHHHHHHC--------
T ss_pred ccCCCCCcccccCHHHHHHHHHHHhcCCC-------CCCcccccCCccCCeEEEEEee-CCCHHHHHHhhcCCCC-----
Confidence 34445899999999999999999997531 3333334556777777777776 7777777788998875
Q ss_pred CCCceEEEEEEECCCC--cEEEEEE-eCccccc-----c-----ccCCcccceEEEeeecCCCCCCCCHHHHHHHHHHHh
Q 004080 157 LPPRRARLVVYNKRSN--ETSIWVV-ELSEVHA-----A-----TRGGHHRGKVISSKVVPDVQPPMDAVEYAECEAVVK 223 (775)
Q Consensus 157 ~P~R~A~vv~~~~~~~--~~~e~iV-~L~~~~~-----~-----~~~~~~~~~v~~~~~l~~~~ppi~~~E~~~~e~~~~ 223 (775)
+|+|+|+|+++++++. .+.|++| +|+.... . .++|. .++...++++..|+..+.++++
T Consensus 127 ~P~R~A~vvi~fG~~~~P~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~g---------~~~~~~r~~~~~e~~~l~~~~~ 197 (797)
T 3pgb_A 127 APTRHAHVRLNNRATTDPYFADILVGPLPVSNATTWEPLEFPYTRKTQG---------QVRNVEPDGETVYSEWLFKISA 197 (797)
T ss_dssp CCCCEEEEEEEECSSSSCEEEEEEEESSSCSTTCEEEECCTTCSSCSTT---------EEECSCCCTTHHHHTTHHHHHH
T ss_pred CCCeeEEEEEEcCCCCCCceEEEEEcCCCCCCcceeEEccccccCCCCC---------CCCcccCcchhhHHHHHHHHHH
Confidence 7899999999999876 6999999 8985210 0 11111 3456778888999999999988
Q ss_pred cChhHHHHHHH---cCCCCCCeEEEecccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecCCc--
Q 004080 224 DFPPFREAMKK---RGIEDMDLVMVDPWCVGYHSDADAPSRRLAKPLIFCRTESDCPIENGYARPVEGIHVLVDMQNM-- 298 (775)
Q Consensus 224 ~~p~~~~a~~~---~gl~~~~~v~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~~~~~~~n~Ya~Pi~g~~~~vD~~~~-- 298 (775)
+-......+.. .|+.+.++++.+.-|.|+.++ +|. +|++|+|...+ ..+++|+||+ ||+++||+.++
T Consensus 198 ~~~~~~~~l~~~t~~~~~~~~L~~~~~~P~g~~sg-----~r~-~W~~~~~~~~g-~~d~~~lhP~-gl~~lvDh~~~Dp 269 (797)
T 3pgb_A 198 SIADITLDLWNGTALGLENDTLDIWGIDPLWQDDG-----RII-RWDMFWNMADD-EFDSETLLPL-GLYLKSDVTGRDP 269 (797)
T ss_dssp HTHHHHHHHHSCCCSSSTTCCEEEEECSSCBCSTT-----CCE-EEEEEEECCCT-TCCCGGGCEE-EEEEEEECCSSCG
T ss_pred HHHHHHHHHhhcccccCCCCeEeeeccCCCCcCCC-----CEE-EeeeeeccCCC-ccccceeecc-ceEEEEecCCCCh
Confidence 75444444432 345556778777777886443 355 89999997421 1256999999 89999999988
Q ss_pred ---EEEEEe-----------------cCceecCCCCCCCCCCCCCCcCCC-CCCCCCCCceecCCCCCeeEEc--ceeec
Q 004080 299 ---VVIEFE-----------------DRKLVHLPPADPLRNYTAGETRGG-VDRSDIKPLQIVQPEGPSFRVN--GHFVE 355 (775)
Q Consensus 299 ---kvv~i~-----------------d~~~~p~p~~~~~~~y~~~~~~~~-~~r~dlkPl~i~QPeG~sF~Vd--g~~V~ 355 (775)
+|.+|- ++.+..+.+. ....|.....++. ..|+++|||+|+||||+||+|+ |++|+
T Consensus 270 s~W~v~~v~Yng~~y~s~eel~~~y~~g~~~~~~~~-~~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~ 348 (797)
T 3pgb_A 270 SQWKLLGWMYNDIFYETTEEFRKAYWSPGFVKLKPN-VDGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVT 348 (797)
T ss_dssp GGCEEEEEEETTEEESSHHHHHHHHTSTTCCCCCCC-CCCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEE
T ss_pred hHcEEEEEEECCEecCCHHHHHHHHhCCCeeecCCC-CCCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEE
Confidence 444432 2333333211 1124433223332 2478999999999999999997 79999
Q ss_pred ccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCC
Q 004080 356 WQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCL 435 (775)
Q Consensus 356 Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~k~afD~geyG~G~~a~~L~~G~DCp 435 (775)
||||+||||||+||||+||||+|+ | |||+||+|||||+|||||+ +|++++++||+||||||.+||+|++|||||
T Consensus 349 W~~W~F~vgfn~ReGlvL~dV~y~----g-r~V~YrlSlsEm~VPYg~~-~P~~~~~af~D~eyG~G~~an~L~lGcDCp 422 (797)
T 3pgb_A 349 WMDFSFYIAFNRDTGLSLFDIKYK----G-QRVLYELGLQEALAHYAAN-DPVQSSVAYLDSYYGFGPYAFELLKGYDCP 422 (797)
T ss_dssp ETTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCS-SHHHHHCEEEGGGTCSGGGCCCCCBTTTBC
T ss_pred eCCcEEEEecCCCCceEEEccccC----C-eeEEEEeEeeeeEEeCCCC-ChhhhcceeeecccCCccccccCccCCCCC
Confidence 999999999999999999999996 3 6899999999999999995 589999999999999999999999999999
Q ss_pred CCeeEeceeeecCCCceEEeeceEEEeeecCCc-cccccccCCCceeeeeeeEEEEEEeeeecccceEEEEEEccCCcEE
Q 004080 436 GYIKYFDAHFTNFAGGVDTIENCVCLHEEDHGI-LWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYAFFWHFYQDGKIE 514 (775)
Q Consensus 436 g~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d~r~g~~~v~r~r~LVvr~I~TVgNYDYi~~w~F~qDGtIe 514 (775)
|+|+|||+++.+. |+|++++|||||||+|+|+ ||||+|+ +.++++|+|+||||+|+|||||||||+|+|||||+||
T Consensus 423 g~i~YlD~~~~~~-~~p~~~~NaICihE~D~G~~lwKHt~~--~~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe 499 (797)
T 3pgb_A 423 SYASYLNTSFYKD-EETHTHVDSLCLFEFDADYPMARHSTS--EFVSVTKNVYFTLRSVSTIGNADYMFSYNFHMDGTIG 499 (797)
T ss_dssp TTCEEEEEEEEET-TEEEEEEEEEEEEEEECSSCSEEEECS--SEEEEECCEEEEEEEEEEETTEEEEEEEEECTTSCEE
T ss_pred CCCEEeeeEEecC-CCceEeccEEEEEEeeCCceeEEeccC--CcceEEeccEEEEEEEeeeccccEEEEEEEecCCeEE
Confidence 9999999999987 7899999999999999997 9999985 6899999999999999999999999999999999999
Q ss_pred EEEeEeEEEEeeecCCCCcCcccceecCCCccccceeeEEEEeeecccCCCCCCccEEEEEeeeecCC---CCCCCCCcc
Q 004080 515 AEVKLTGILSLGALQPGEVRKYGTIIAPGLYAPVHQHFFVARMDMAVDCKPGEAHNQVVEMNVKVEEP---GKNNVHNNA 591 (775)
Q Consensus 515 ~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~~~ 591 (775)
+||+|||||++..+. + ..+|||+|+|+++|++|||+||||||||||| .+|+|++++++.++. +..++++++
T Consensus 500 ~eVraTGiLst~~~~-~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~~~p~~p~~~~n~ 573 (797)
T 3pgb_A 500 VEVRASGYIQSAYYA-N-NQDFGYQIHDSLSGSMHDHVLNFKADFDILG----PNNTIELVSVVPVTKQFSWSGNKTRNT 573 (797)
T ss_dssp EEEEEEECCCCEECT-T-CGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEEEEEEEECTTTTTCEEEE
T ss_pred EEEEEEEEEEecccC-C-CCCccceecCCccccccceEEEEeeccCCCC----CCCeEEEEeeEEccCCCCCCCCcccce
Confidence 999999999999653 3 5789999999999999999999999999997 699999999886542 223366788
Q ss_pred eEEEEEEeehHHhhhhccCCCCCeEEEEeeCCCcCCCCCceeEEEecCCCCCCCCCCchH-HhhhhhccccceEEeecCC
Q 004080 592 FYAEEELLKSELQAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAK-VLRRAAFLKHNLWVTPYAH 670 (775)
Q Consensus 592 ~~~~~t~l~~E~~a~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~-~~~ra~fa~~~lwVT~y~d 670 (775)
|+++++++++|.+|+++++++++|+|+|+|++++|++|+|+||||+|+.++++|+.++|. ..+||+|++||||||||+|
T Consensus 574 ~~~~~t~l~tE~eA~~~~~~~~~r~~~ivN~~~~N~~G~pvgYkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d 653 (797)
T 3pgb_A 574 MQLGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHD 653 (797)
T ss_dssp EEEEEEECCBGGGCEECCCGGGCEEEEEEEEEEECTTSCEEEEEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCT
T ss_pred eEEEEEEccchhhhhhhcCCCCCceEEEeCCCCcCCCCCeeeEEEccCCCCccccCCCchhhhhhchhhhCceEEecCCC
Confidence 999999999999999999999999999999999999999999999999888888877775 5688999999999999999
Q ss_pred CCcCCCCCCCCCCCCCC-CChhhhcccCCceeeCCeEEEEEeccccCCCCCCCCC--CccceeeEEEEeCCCCCCCCCCC
Q 004080 671 DEMYPGGEFPNQNPRVG-EGLATWVEQNRSLEETDIVLWYVFGVTHIPRLEDWPV--MPVDRIGFMLMPHGFFNCSPAVD 747 (775)
Q Consensus 671 ~E~~asg~y~nq~~~~~-~gl~~~~~~~esI~~eDiV~W~t~G~~HiPr~ED~Pv--MP~~~~~f~L~P~nFFd~nPald 747 (775)
+|+||+|+|++|++..+ .+|.+|+ +||+|+|||||||||||+||+||+||||| ||++++||+|||+||||+||+||
T Consensus 654 ~E~~aaG~y~~qs~~~~~v~~~~~~-~nesI~neDiVlW~t~G~~HiPr~ED~Pvt~MP~e~~gf~LrP~nFFd~NPald 732 (797)
T 3pgb_A 654 FEPTSAHPYNSQDIHNPPVDFSTFF-NGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSRE 732 (797)
T ss_dssp TCCCSCCTTGGGCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCTTTSEEEEEEEEESCSSSCGGGG
T ss_pred CccCCCCCCcccCCCCCccchhhhc-CCCccccCceEEEEecccccCCChhhCCCccCCcceeEEEEEcCCCCCCCcccc
Confidence 99999999999987422 4678898 99999999999999999999999999999 99999999999999999999999
Q ss_pred CCCC
Q 004080 748 VPPN 751 (775)
Q Consensus 748 vP~s 751 (775)
+|.+
T Consensus 733 ~~~~ 736 (797)
T 3pgb_A 733 TVNM 736 (797)
T ss_dssp CSCE
T ss_pred Cccc
Confidence 9975
No 10
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=9.37 E-value=4.7e+02 Score=24.65 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCCCceecCCCCCeeEEcceeecccCeEEEEEeCCCcceEEEEEEEecCCCCcccEEEEeeeeeEEeecCCCCCcccc
Q 004080 333 DIKPLQIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYR 410 (775)
Q Consensus 333 dlkPl~i~QPeG~sF~Vdg~~V~Wq~W~F~vgf~~reGlvL~dV~f~d~~~g~R~I~YrlSl~Em~VpYgdp~~p~~~ 410 (775)
++|-...+=+||..|+| +-+|+|.-+.=.||...++.++- |- +| -...+|+--|+....++..
T Consensus 33 ~~k~~~f~iKEG~~Y~i--------ki~F~V~~eivsGLkY~q~v~r~---Gi-~V---dk~~~mlGsy~P~~e~y~~ 95 (141)
T 1kmt_A 33 SFKKQSFVLKEGVEYRI--------KISFRVNREIVSGMKYIQHTYRK---GV-KI---DKTDYMVGSYGPRAAAYEF 95 (141)
T ss_dssp GGGGCCEEEETTCEEEE--------EEEEEECSSCEEEEEEEEEEEET---TE-EE---EEEEEEEEEECCCSSCEEE
T ss_pred hhccCceEccCCcEEEE--------EEEEEEccccccCcEEEEEEEEC---CE-EE---CcceEeeeccCCCCCccee
Confidence 33444455588988888 56788988999999999999973 43 34 4567999999965555443
Done!