Query 004081
Match_columns 775
No_of_seqs 256 out of 364
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4322 Anaphase-promoting com 100.0 8.6E-43 1.9E-47 371.2 36.4 459 129-768 18-479 (482)
2 PF12862 Apc5: Anaphase-promot 99.9 9.6E-22 2.1E-26 176.1 10.4 93 173-274 1-93 (94)
3 KOG1130 Predicted G-alpha GTPa 99.7 1.5E-15 3.2E-20 162.1 18.6 273 476-761 55-350 (639)
4 KOG1130 Predicted G-alpha GTPa 99.6 1.2E-14 2.6E-19 155.2 18.5 274 476-761 17-310 (639)
5 KOG1840 Kinesin light chain [C 99.5 5.6E-12 1.2E-16 143.6 30.7 267 472-748 195-472 (508)
6 TIGR00990 3a0801s09 mitochondr 99.5 2.6E-10 5.6E-15 135.6 45.1 234 474-747 329-563 (615)
7 KOG4626 O-linked N-acetylgluco 99.5 6.3E-12 1.4E-16 140.2 26.0 228 474-747 250-477 (966)
8 PRK11447 cellulose synthase su 99.5 3.4E-10 7.3E-15 143.7 45.4 480 132-747 27-516 (1157)
9 TIGR02917 PEP_TPR_lipo putativ 99.4 2.7E-09 5.8E-14 129.5 46.2 227 477-749 466-692 (899)
10 PRK11447 cellulose synthase su 99.4 1.6E-09 3.5E-14 137.6 45.7 161 563-756 578-738 (1157)
11 KOG1941 Acetylcholine receptor 99.4 5.8E-11 1.3E-15 125.8 26.9 285 465-758 72-363 (518)
12 TIGR02917 PEP_TPR_lipo putativ 99.4 3.1E-09 6.8E-14 128.9 45.5 222 478-747 671-892 (899)
13 PRK04841 transcriptional regul 99.4 1.3E-09 2.9E-14 134.9 38.4 296 440-747 456-752 (903)
14 KOG1941 Acetylcholine receptor 99.3 1.4E-10 3.1E-15 122.9 22.1 256 472-740 39-300 (518)
15 PRK15174 Vi polysaccharide exp 99.3 1.8E-08 3.9E-13 120.7 39.7 220 486-745 187-410 (656)
16 KOG1840 Kinesin light chain [C 99.3 2.8E-09 6.1E-14 121.7 28.3 237 474-721 239-485 (508)
17 PRK11788 tetratricopeptide rep 99.2 9.9E-09 2.1E-13 114.4 28.9 235 476-747 69-303 (389)
18 PRK04841 transcriptional regul 99.2 1E-08 2.2E-13 127.2 31.9 267 473-754 371-640 (903)
19 PRK11788 tetratricopeptide rep 99.1 2.2E-08 4.8E-13 111.5 27.5 208 474-716 105-312 (389)
20 KOG4626 O-linked N-acetylgluco 99.1 9.3E-09 2E-13 115.3 23.9 375 163-714 109-484 (966)
21 TIGR00990 3a0801s09 mitochondr 99.1 1.5E-08 3.3E-13 120.6 27.6 244 438-721 333-577 (615)
22 PRK10049 pgaA outer membrane p 99.1 1.8E-07 3.9E-12 114.1 36.0 222 493-747 213-448 (765)
23 TIGR02521 type_IV_pilW type IV 99.1 1.8E-08 3.9E-13 101.6 21.2 206 472-715 27-232 (234)
24 PF14938 SNAP: Soluble NSF att 99.0 2.4E-08 5.3E-13 107.4 21.5 188 558-754 35-224 (282)
25 PRK15174 Vi polysaccharide exp 99.0 1.4E-07 2.9E-12 113.2 29.0 226 476-747 144-373 (656)
26 PF14938 SNAP: Soluble NSF att 99.0 3.7E-08 7.9E-13 106.0 21.5 207 525-744 44-252 (282)
27 PRK10049 pgaA outer membrane p 99.0 3E-06 6.4E-11 103.6 39.0 212 476-716 237-457 (765)
28 TIGR02521 type_IV_pilW type IV 98.9 2.1E-07 4.6E-12 93.8 21.4 190 524-751 39-228 (234)
29 PRK14574 hmsH outer membrane p 98.8 3.6E-05 7.8E-10 93.9 40.4 194 525-747 301-505 (822)
30 KOG1126 DNA-binding cell divis 98.8 1.1E-07 2.4E-12 108.5 17.1 231 476-747 353-612 (638)
31 cd05804 StaR_like StaR_like; a 98.8 9.2E-06 2E-10 89.4 31.6 285 437-751 7-332 (355)
32 PRK09782 bacteriophage N4 rece 98.8 6.7E-07 1.5E-11 110.7 24.7 223 475-747 476-698 (987)
33 KOG2300 Uncharacterized conser 98.8 0.00029 6.3E-09 78.3 40.8 210 527-747 286-506 (629)
34 KOG2002 TPR-containing nuclear 98.7 5.3E-05 1.2E-09 90.0 37.0 238 476-749 496-739 (1018)
35 PRK12370 invasion protein regu 98.7 1.2E-06 2.6E-11 103.1 23.6 225 476-747 295-528 (553)
36 TIGR00540 hemY_coli hemY prote 98.7 7.9E-06 1.7E-10 92.6 29.2 289 439-765 121-409 (409)
37 COG3063 PilF Tfp pilus assembl 98.7 3.5E-06 7.6E-11 85.8 22.8 217 454-708 8-229 (250)
38 COG2956 Predicted N-acetylgluc 98.7 3.1E-06 6.7E-11 89.6 22.8 218 475-722 68-285 (389)
39 cd05804 StaR_like StaR_like; a 98.7 8.4E-07 1.8E-11 97.7 19.7 209 474-713 4-213 (355)
40 PRK11189 lipoprotein NlpI; Pro 98.7 4.8E-06 1E-10 90.3 24.4 226 471-736 59-284 (296)
41 PRK09782 bacteriophage N4 rece 98.7 1.3E-06 2.9E-11 108.1 22.1 196 479-716 512-707 (987)
42 PRK12370 invasion protein regu 98.7 7.6E-07 1.7E-11 104.8 19.0 214 489-741 274-490 (553)
43 PF13429 TPR_15: Tetratricopep 98.6 1.2E-07 2.6E-12 101.5 10.5 224 478-747 46-269 (280)
44 PRK10747 putative protoheme IX 98.6 1.2E-05 2.7E-10 90.7 26.5 195 525-747 127-382 (398)
45 COG3063 PilF Tfp pilus assembl 98.6 9.5E-07 2.1E-11 89.8 15.0 140 553-716 30-169 (250)
46 KOG2002 TPR-containing nuclear 98.6 9.9E-05 2.1E-09 87.7 33.4 245 477-756 271-537 (1018)
47 PRK14574 hmsH outer membrane p 98.6 0.0004 8.6E-09 84.9 38.6 247 477-747 204-471 (822)
48 PRK11189 lipoprotein NlpI; Pro 98.5 1.1E-05 2.5E-10 87.3 22.2 218 489-748 39-258 (296)
49 TIGR03302 OM_YfiO outer membra 98.5 7.4E-06 1.6E-10 85.0 18.9 181 472-666 29-229 (235)
50 PRK15179 Vi polysaccharide bio 98.4 6.8E-06 1.5E-10 98.3 19.3 177 530-739 63-239 (694)
51 TIGR03302 OM_YfiO outer membra 98.3 2.9E-05 6.3E-10 80.6 18.0 174 524-716 41-233 (235)
52 PRK15179 Vi polysaccharide bio 98.3 2.7E-05 5.8E-10 93.3 19.8 133 476-628 86-218 (694)
53 COG3071 HemY Uncharacterized e 98.3 0.0005 1.1E-08 75.1 27.3 237 479-749 87-384 (400)
54 KOG1155 Anaphase-promoting com 98.3 0.0045 9.7E-08 69.0 34.3 200 478-713 332-534 (559)
55 TIGR00540 hemY_coli hemY prote 98.2 0.00052 1.1E-08 77.9 27.2 240 477-749 119-358 (409)
56 PF09976 TPR_21: Tetratricopep 98.2 8.1E-05 1.7E-09 71.8 17.4 123 488-625 23-145 (145)
57 KOG4322 Anaphase-promoting com 98.2 6.9E-05 1.5E-09 82.2 18.1 133 127-272 210-342 (482)
58 PLN03081 pentatricopeptide (PP 98.2 0.0039 8.5E-08 75.6 34.7 234 478-758 327-560 (697)
59 COG2956 Predicted N-acetylgluc 98.2 0.00071 1.5E-08 72.2 23.9 223 489-747 48-270 (389)
60 PF13429 TPR_15: Tetratricopep 98.1 1.8E-05 4E-10 84.6 12.4 165 481-671 115-279 (280)
61 KOG1129 TPR repeat-containing 98.1 3.7E-05 8E-10 81.6 13.6 235 474-749 179-418 (478)
62 COG2909 MalT ATP-dependent tra 98.1 0.0014 3E-08 78.0 27.6 254 480-747 419-680 (894)
63 PRK10747 putative protoheme IX 98.1 0.00034 7.3E-09 79.1 21.7 207 482-716 124-391 (398)
64 PF09976 TPR_21: Tetratricopep 98.1 0.00017 3.8E-09 69.5 16.3 133 560-713 13-145 (145)
65 PF13424 TPR_12: Tetratricopep 98.1 3.5E-05 7.5E-10 65.9 10.1 73 557-629 4-77 (78)
66 KOG1126 DNA-binding cell divis 98.1 9.6E-05 2.1E-09 84.9 16.5 227 441-714 393-619 (638)
67 PLN03218 maturation of RBCL 1; 98.0 0.0011 2.4E-08 83.2 24.7 233 476-747 542-775 (1060)
68 PRK15359 type III secretion sy 98.0 0.00011 2.3E-09 71.2 12.5 111 536-671 13-123 (144)
69 KOG0547 Translocase of outer m 97.9 0.0003 6.6E-09 78.3 17.1 207 479-719 363-570 (606)
70 KOG2003 TPR repeat-containing 97.9 0.00068 1.5E-08 74.5 19.3 234 478-752 456-719 (840)
71 PLN03218 maturation of RBCL 1; 97.9 0.0018 4E-08 81.3 25.6 238 476-751 507-744 (1060)
72 KOG1129 TPR repeat-containing 97.9 0.00038 8.2E-09 74.1 16.4 225 480-748 227-451 (478)
73 KOG1155 Anaphase-promoting com 97.9 0.00048 1E-08 76.4 17.8 191 525-749 339-530 (559)
74 PF13424 TPR_12: Tetratricopep 97.9 8.4E-05 1.8E-09 63.5 9.6 75 636-718 3-78 (78)
75 KOG1174 Anaphase-promoting com 97.9 0.0013 2.9E-08 72.0 20.6 231 476-747 232-492 (564)
76 KOG1173 Anaphase-promoting com 97.9 0.0003 6.5E-09 79.6 15.6 175 474-670 344-519 (611)
77 KOG0624 dsRNA-activated protei 97.8 0.0032 6.9E-08 67.7 21.5 246 476-747 72-362 (504)
78 PF10345 Cohesin_load: Cohesin 97.8 0.017 3.7E-07 69.1 30.5 202 553-763 54-262 (608)
79 CHL00033 ycf3 photosystem I as 97.8 0.00039 8.5E-09 68.6 13.7 139 574-727 15-156 (168)
80 KOG0547 Translocase of outer m 97.8 0.0003 6.5E-09 78.3 13.8 175 476-672 394-569 (606)
81 PF10345 Cohesin_load: Cohesin 97.8 0.059 1.3E-06 64.5 34.6 279 469-760 52-395 (608)
82 KOG2003 TPR repeat-containing 97.8 0.00041 8.9E-09 76.2 14.4 165 480-670 423-588 (840)
83 PRK15359 type III secretion sy 97.8 0.00042 9.1E-09 67.0 13.3 91 525-629 33-123 (144)
84 KOG4162 Predicted calmodulin-b 97.8 0.0041 8.8E-08 72.9 22.9 245 477-749 479-777 (799)
85 KOG2300 Uncharacterized conser 97.7 0.012 2.6E-07 65.9 25.1 247 489-750 288-551 (629)
86 KOG0550 Molecular chaperone (D 97.7 0.0014 3.1E-08 71.9 17.3 205 525-760 212-425 (486)
87 KOG1173 Anaphase-promoting com 97.7 0.0059 1.3E-07 69.5 22.2 240 476-747 244-510 (611)
88 KOG1586 Protein required for f 97.7 0.007 1.5E-07 62.2 20.1 178 490-692 28-207 (288)
89 KOG2076 RNA polymerase III tra 97.6 0.013 2.7E-07 70.0 24.9 93 524-626 215-308 (895)
90 PLN03077 Protein ECB2; Provisi 97.6 0.057 1.2E-06 67.2 32.7 181 524-747 432-646 (857)
91 PF12688 TPR_5: Tetratrico pep 97.6 0.0017 3.7E-08 60.9 14.5 113 559-683 2-115 (120)
92 PLN03077 Protein ECB2; Provisi 97.6 0.23 4.9E-06 61.9 37.3 237 477-758 456-723 (857)
93 PF12862 Apc5: Anaphase-promot 97.6 0.00076 1.6E-08 60.4 10.8 81 568-648 8-91 (94)
94 PLN03081 pentatricopeptide (PP 97.6 0.0018 3.8E-08 78.6 17.6 229 476-750 290-518 (697)
95 PF13525 YfiO: Outer membrane 97.6 0.023 5E-07 58.1 23.0 171 473-654 2-194 (203)
96 KOG2076 RNA polymerase III tra 97.5 0.021 4.5E-07 68.2 25.0 126 598-747 378-504 (895)
97 KOG0624 dsRNA-activated protei 97.5 0.016 3.5E-07 62.4 21.6 265 474-768 104-431 (504)
98 PRK10866 outer membrane biogen 97.5 0.019 4.1E-07 60.6 22.1 197 525-752 41-238 (243)
99 PRK10866 outer membrane biogen 97.5 0.028 6.1E-07 59.3 23.0 177 475-664 31-236 (243)
100 KOG1585 Protein required for f 97.5 0.024 5.2E-07 58.7 21.1 188 553-749 26-213 (308)
101 KOG3060 Uncharacterized conser 97.5 0.033 7.2E-07 58.1 22.3 210 434-671 8-222 (289)
102 KOG0495 HAT repeat protein [RN 97.5 0.0041 9E-08 71.6 17.2 158 480-666 588-745 (913)
103 PF13525 YfiO: Outer membrane 97.5 0.017 3.8E-07 59.0 20.6 178 555-747 2-199 (203)
104 COG5010 TadD Flp pilus assembl 97.4 0.0019 4.2E-08 67.3 13.2 159 480-666 70-228 (257)
105 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.002 4.4E-08 58.5 12.0 103 477-587 3-105 (119)
106 PRK10370 formate-dependent nit 97.4 0.0019 4.2E-08 65.9 12.9 126 529-676 52-180 (198)
107 COG2909 MalT ATP-dependent tra 97.4 0.051 1.1E-06 65.2 26.0 258 443-711 420-684 (894)
108 CHL00033 ycf3 photosystem I as 97.4 0.0034 7.3E-08 61.9 14.2 105 555-670 32-143 (168)
109 PF12688 TPR_5: Tetratrico pep 97.4 0.0017 3.7E-08 60.9 11.2 102 599-714 2-103 (120)
110 PRK10370 formate-dependent nit 97.4 0.0039 8.5E-08 63.7 14.7 122 489-630 52-176 (198)
111 PF12895 Apc3: Anaphase-promot 97.3 0.0015 3.3E-08 56.7 9.0 83 529-624 2-84 (84)
112 PRK02603 photosystem I assembl 97.3 0.0076 1.7E-07 59.8 15.0 117 592-719 29-146 (172)
113 COG3071 HemY Uncharacterized e 97.2 0.099 2.1E-06 57.7 24.0 211 472-718 149-393 (400)
114 cd00189 TPR Tetratricopeptide 97.2 0.0011 2.4E-08 55.5 7.4 96 560-669 2-97 (100)
115 TIGR02552 LcrH_SycD type III s 97.2 0.0037 8E-08 58.7 11.6 91 525-629 26-116 (135)
116 TIGR02552 LcrH_SycD type III s 97.2 0.0029 6.3E-08 59.4 10.6 100 558-671 17-116 (135)
117 PLN03088 SGT1, suppressor of 97.2 0.0028 6.1E-08 70.6 11.7 91 524-628 10-100 (356)
118 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0052 1.1E-07 55.7 11.7 104 559-670 3-106 (119)
119 PRK15363 pathogenicity island 97.2 0.005 1.1E-07 60.1 11.8 100 557-670 34-133 (157)
120 PRK15363 pathogenicity island 97.1 0.006 1.3E-07 59.6 12.1 91 525-629 44-134 (157)
121 COG4700 Uncharacterized protei 97.1 0.029 6.4E-07 55.9 16.5 128 525-672 98-225 (251)
122 PRK02603 photosystem I assembl 97.1 0.0052 1.1E-07 61.0 11.6 92 554-654 31-122 (172)
123 KOG3060 Uncharacterized conser 97.0 0.17 3.8E-06 52.9 22.1 192 492-717 28-222 (289)
124 KOG0550 Molecular chaperone (D 97.0 0.067 1.4E-06 59.2 20.1 222 479-727 206-435 (486)
125 KOG1174 Anaphase-promoting com 97.0 0.071 1.5E-06 59.0 20.1 204 476-714 266-499 (564)
126 KOG1585 Protein required for f 97.0 0.077 1.7E-06 55.1 19.0 146 593-747 26-171 (308)
127 PLN03088 SGT1, suppressor of 97.0 0.0037 8.1E-08 69.7 10.6 96 561-670 5-100 (356)
128 PF13414 TPR_11: TPR repeat; P 97.0 0.0036 7.8E-08 51.8 8.0 64 558-627 3-67 (69)
129 COG4783 Putative Zn-dependent 97.0 0.046 1E-06 61.6 18.7 126 476-621 306-431 (484)
130 KOG1586 Protein required for f 97.0 0.037 8E-07 57.0 16.2 155 572-757 28-182 (288)
131 KOG4162 Predicted calmodulin-b 96.9 0.041 8.9E-07 64.9 18.5 222 493-747 461-705 (799)
132 KOG4555 TPR repeat-containing 96.9 0.013 2.8E-07 55.2 11.6 107 560-680 45-151 (175)
133 PF13432 TPR_16: Tetratricopep 96.9 0.0047 1E-07 50.6 8.1 61 562-628 1-61 (65)
134 PF12895 Apc3: Anaphase-promot 96.9 0.0041 8.8E-08 54.0 8.0 83 571-666 2-84 (84)
135 KOG0495 HAT repeat protein [RN 96.9 0.17 3.7E-06 58.8 22.6 227 487-754 629-879 (913)
136 KOG1125 TPR repeat-containing 96.9 0.065 1.4E-06 61.5 19.2 232 480-745 289-561 (579)
137 KOG1125 TPR repeat-containing 96.9 0.029 6.3E-07 64.2 16.3 207 442-672 318-530 (579)
138 KOG4340 Uncharacterized conser 96.9 0.092 2E-06 55.8 18.6 115 597-747 143-262 (459)
139 KOG1070 rRNA processing protei 96.8 0.4 8.7E-06 60.1 26.5 242 479-761 1461-1706(1710)
140 cd00189 TPR Tetratricopeptide 96.8 0.0032 6.9E-08 52.6 6.5 96 600-715 2-97 (100)
141 KOG0553 TPR repeat-containing 96.8 0.009 1.9E-07 63.6 10.7 100 557-670 80-179 (304)
142 COG5010 TadD Flp pilus assembl 96.8 0.022 4.7E-07 59.6 13.2 123 525-669 75-197 (257)
143 KOG0548 Molecular co-chaperone 96.7 0.07 1.5E-06 60.8 17.7 159 475-669 297-455 (539)
144 PLN02789 farnesyltranstransfer 96.7 0.53 1.1E-05 51.8 24.5 226 473-738 34-267 (320)
145 KOG4555 TPR repeat-containing 96.6 0.015 3.3E-07 54.7 9.9 95 525-629 52-146 (175)
146 KOG0553 TPR repeat-containing 96.6 0.01 2.3E-07 63.1 9.8 91 524-628 89-179 (304)
147 PRK14720 transcript cleavage f 96.6 0.097 2.1E-06 64.3 19.3 216 474-718 29-255 (906)
148 PF04733 Coatomer_E: Coatomer 96.5 0.011 2.5E-07 63.9 9.6 223 471-747 30-257 (290)
149 COG4700 Uncharacterized protei 96.4 0.3 6.5E-06 49.0 17.7 126 560-709 91-216 (251)
150 KOG1463 26S proteasome regulat 96.4 0.94 2E-05 49.3 22.6 198 524-732 56-255 (411)
151 PRK14720 transcript cleavage f 96.4 0.044 9.5E-07 67.2 14.4 154 557-733 30-196 (906)
152 KOG1127 TPR repeat-containing 96.4 0.25 5.4E-06 60.0 20.0 246 438-717 456-702 (1238)
153 COG4783 Putative Zn-dependent 96.4 0.056 1.2E-06 61.0 14.0 140 557-716 305-455 (484)
154 COG4105 ComL DNA uptake lipopr 96.3 0.75 1.6E-05 48.4 21.3 174 475-661 33-225 (254)
155 PF12569 NARP1: NMDA receptor- 96.3 0.26 5.6E-06 57.6 19.7 149 553-721 189-340 (517)
156 PF09295 ChAPs: ChAPs (Chs5p-A 96.3 0.062 1.4E-06 60.5 14.1 117 483-622 176-292 (395)
157 PF09295 ChAPs: ChAPs (Chs5p-A 96.3 0.06 1.3E-06 60.6 13.9 119 526-670 179-297 (395)
158 PRK15331 chaperone protein Sic 96.3 0.055 1.2E-06 53.3 11.8 114 556-686 35-148 (165)
159 KOG3617 WD40 and TPR repeat-co 96.2 1.7 3.6E-05 52.1 25.3 203 525-754 835-1092(1416)
160 PRK10803 tol-pal system protei 96.2 0.051 1.1E-06 58.0 12.6 94 527-628 154-247 (263)
161 KOG1463 26S proteasome regulat 96.2 0.65 1.4E-05 50.5 20.3 212 477-692 49-263 (411)
162 PRK10803 tol-pal system protei 96.2 0.069 1.5E-06 57.0 13.3 104 477-588 143-247 (263)
163 KOG1156 N-terminal acetyltrans 96.2 1.1 2.4E-05 52.5 23.3 241 478-761 9-251 (700)
164 KOG0543 FKBP-type peptidyl-pro 96.2 0.036 7.8E-07 61.3 11.1 100 525-630 217-323 (397)
165 KOG3081 Vesicle coat complex C 96.1 0.33 7.1E-06 51.2 17.2 148 559-743 109-258 (299)
166 COG3898 Uncharacterized membra 96.1 3.1 6.6E-05 46.3 25.9 167 477-666 121-289 (531)
167 PF04733 Coatomer_E: Coatomer 96.1 0.04 8.7E-07 59.7 11.0 155 478-665 104-261 (290)
168 PF14559 TPR_19: Tetratricopep 96.1 0.022 4.8E-07 46.8 7.1 52 527-586 2-53 (68)
169 PRK10153 DNA-binding transcrip 96.0 0.091 2E-06 61.5 14.1 137 557-714 338-481 (517)
170 KOG0548 Molecular co-chaperone 96.0 0.4 8.7E-06 54.8 18.4 213 475-715 223-455 (539)
171 KOG3617 WD40 and TPR repeat-co 96.0 2.3 5E-05 51.0 24.7 150 525-714 809-995 (1416)
172 PF13432 TPR_16: Tetratricopep 96.0 0.032 6.9E-07 45.6 7.4 56 524-587 5-60 (65)
173 PF13414 TPR_11: TPR repeat; P 95.9 0.024 5.2E-07 46.9 6.4 65 597-669 2-67 (69)
174 PF12569 NARP1: NMDA receptor- 95.9 0.19 4.1E-06 58.7 15.8 154 471-642 189-349 (517)
175 PRK10153 DNA-binding transcrip 95.8 0.66 1.4E-05 54.4 20.1 144 471-629 334-484 (517)
176 PF13512 TPR_18: Tetratricopep 95.7 0.25 5.5E-06 47.6 13.1 90 476-573 10-99 (142)
177 PF10602 RPN7: 26S proteasome 95.6 0.24 5.3E-06 49.7 13.7 117 467-588 27-143 (177)
178 PF13176 TPR_7: Tetratricopept 95.5 0.028 6E-07 40.9 4.6 35 224-258 1-35 (36)
179 PF11817 Foie-gras_1: Foie gra 95.4 1.9 4.2E-05 45.5 20.4 180 560-747 12-239 (247)
180 PF12968 DUF3856: Domain of Un 95.4 0.65 1.4E-05 43.3 14.1 106 524-629 17-131 (144)
181 KOG2376 Signal recognition par 95.4 7.3 0.00016 45.5 27.5 258 473-746 172-478 (652)
182 COG2976 Uncharacterized protei 95.3 0.65 1.4E-05 47.0 14.9 92 524-627 97-188 (207)
183 KOG2047 mRNA splicing factor [ 95.2 4.7 0.0001 47.4 23.4 246 483-747 109-408 (835)
184 PLN02789 farnesyltranstransfer 95.2 0.7 1.5E-05 50.9 16.7 127 527-675 48-177 (320)
185 COG5159 RPN6 26S proteasome re 95.2 3.3 7.1E-05 44.2 20.3 245 481-738 8-260 (421)
186 COG4105 ComL DNA uptake lipopr 95.1 2.3 4.9E-05 44.9 19.0 183 554-751 30-229 (254)
187 PF13371 TPR_9: Tetratricopept 95.0 0.12 2.6E-06 43.1 7.8 58 524-589 3-60 (73)
188 KOG4340 Uncharacterized conser 95.0 0.2 4.4E-06 53.3 10.9 136 476-633 78-213 (459)
189 COG3898 Uncharacterized membra 94.9 3.3 7.2E-05 46.0 19.9 143 525-689 93-237 (531)
190 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.13 2.7E-06 58.3 9.2 67 557-627 74-141 (453)
191 KOG0543 FKBP-type peptidyl-pro 94.6 0.42 9.2E-06 53.1 12.8 103 560-670 210-321 (397)
192 COG2976 Uncharacterized protei 94.4 6.5 0.00014 40.0 21.0 104 595-716 86-189 (207)
193 KOG1915 Cell cycle control pro 94.4 10 0.00023 43.2 22.8 220 489-741 379-611 (677)
194 COG5159 RPN6 26S proteasome re 94.3 8.9 0.00019 41.1 21.0 215 474-692 43-260 (421)
195 KOG1128 Uncharacterized conser 94.3 0.27 5.9E-06 58.0 10.9 124 527-672 496-619 (777)
196 PF13371 TPR_9: Tetratricopept 94.3 0.12 2.5E-06 43.1 6.0 59 565-629 2-60 (73)
197 PF10602 RPN7: 26S proteasome 94.1 1.6 3.4E-05 43.8 14.7 99 524-627 44-142 (177)
198 PF08626 TRAPPC9-Trs120: Trans 94.0 3.4 7.5E-05 53.4 21.1 182 559-748 243-545 (1185)
199 PF08631 SPO22: Meiosis protei 94.0 11 0.00023 40.6 24.1 139 526-670 3-151 (278)
200 PF14559 TPR_19: Tetratricopep 93.9 0.089 1.9E-06 43.2 4.5 56 568-629 1-56 (68)
201 KOG3616 Selective LIM binding 93.6 5.4 0.00012 47.4 19.1 171 566-747 799-1016(1636)
202 KOG2796 Uncharacterized conser 93.5 2.5 5.4E-05 44.7 14.9 133 524-671 185-317 (366)
203 KOG3081 Vesicle coat complex C 93.4 5.3 0.00011 42.5 17.3 147 480-660 112-261 (299)
204 KOG1128 Uncharacterized conser 93.2 1.9 4.1E-05 51.2 14.9 152 477-648 486-637 (777)
205 COG3118 Thioredoxin domain-con 92.8 5.6 0.00012 42.9 16.7 147 484-654 142-288 (304)
206 PF10300 DUF3808: Protein of u 92.7 4.5 9.7E-05 47.0 17.5 165 529-720 201-374 (468)
207 KOG1127 TPR repeat-containing 92.7 2.2 4.8E-05 52.2 14.9 177 474-670 524-701 (1238)
208 KOG1464 COP9 signalosome, subu 92.7 12 0.00025 40.0 18.4 236 489-740 40-286 (440)
209 PF13176 TPR_7: Tetratricopept 92.7 0.25 5.3E-06 35.8 4.6 30 601-630 2-31 (36)
210 PRK15331 chaperone protein Sic 92.6 0.83 1.8E-05 45.1 9.6 90 525-628 46-135 (165)
211 PRK11906 transcriptional regul 92.5 7.5 0.00016 44.5 18.2 163 478-664 257-431 (458)
212 KOG2047 mRNA splicing factor [ 92.5 28 0.00061 41.3 34.8 207 443-670 394-616 (835)
213 COG1729 Uncharacterized protei 92.5 0.88 1.9E-05 48.3 10.2 95 525-627 150-244 (262)
214 KOG4234 TPR repeat-containing 92.3 0.6 1.3E-05 47.4 8.3 99 563-670 100-198 (271)
215 KOG1156 N-terminal acetyltrans 92.2 18 0.00038 42.9 20.9 174 477-672 42-217 (700)
216 KOG2471 TPR repeat-containing 92.1 0.5 1.1E-05 53.5 8.1 128 557-692 239-381 (696)
217 COG4785 NlpI Lipoprotein NlpI, 92.1 5.4 0.00012 41.2 14.7 77 532-622 81-157 (297)
218 KOG3785 Uncharacterized conser 92.0 23 0.00049 39.2 20.4 86 524-622 30-115 (557)
219 COG1729 Uncharacterized protei 92.0 1.5 3.3E-05 46.5 11.2 99 479-588 144-245 (262)
220 PF10300 DUF3808: Protein of u 91.8 9.1 0.0002 44.4 18.6 169 484-670 196-370 (468)
221 PF03704 BTAD: Bacterial trans 91.7 11 0.00025 35.7 16.3 110 478-595 8-134 (146)
222 KOG1070 rRNA processing protei 91.6 5.2 0.00011 50.8 16.7 136 476-629 1530-1665(1710)
223 PF12739 TRAPPC-Trs85: ER-Golg 91.6 19 0.00041 41.1 20.7 174 560-737 210-401 (414)
224 COG3118 Thioredoxin domain-con 91.2 2.9 6.2E-05 45.0 12.4 137 525-683 143-279 (304)
225 PLN03098 LPA1 LOW PSII ACCUMUL 91.2 0.71 1.5E-05 52.4 8.4 69 474-545 73-141 (453)
226 KOG2581 26S proteasome regulat 91.1 17 0.00037 40.8 18.3 178 557-745 125-306 (493)
227 KOG1915 Cell cycle control pro 91.0 22 0.00048 40.7 19.4 198 488-714 334-535 (677)
228 PF00515 TPR_1: Tetratricopept 90.9 0.29 6.3E-06 34.5 3.3 32 223-254 2-33 (34)
229 PF08626 TRAPPC9-Trs120: Trans 90.9 3.2 7E-05 53.7 15.0 150 595-745 239-464 (1185)
230 KOG4234 TPR repeat-containing 90.9 4.1 8.8E-05 41.6 12.3 95 525-628 104-198 (271)
231 PF08631 SPO22: Meiosis protei 90.8 26 0.00057 37.5 23.0 225 471-713 30-273 (278)
232 PF13374 TPR_10: Tetratricopep 90.6 0.44 9.6E-06 34.7 4.2 33 223-255 3-35 (42)
233 PF13512 TPR_18: Tetratricopep 90.5 3 6.6E-05 40.3 10.8 82 524-613 18-99 (142)
234 KOG3785 Uncharacterized conser 90.2 2.1 4.5E-05 46.9 10.3 61 601-669 154-214 (557)
235 PF03704 BTAD: Bacterial trans 90.1 3.7 8.1E-05 39.1 11.3 107 557-671 5-127 (146)
236 KOG2610 Uncharacterized conser 89.7 11 0.00024 41.3 15.2 171 485-675 112-282 (491)
237 PF13181 TPR_8: Tetratricopept 89.5 0.67 1.5E-05 32.4 4.3 30 224-253 3-32 (34)
238 KOG2796 Uncharacterized conser 89.5 6 0.00013 42.0 12.7 140 477-629 178-317 (366)
239 PF13374 TPR_10: Tetratricopep 89.2 0.81 1.8E-05 33.3 4.7 32 599-630 3-34 (42)
240 PF13281 DUF4071: Domain of un 89.1 29 0.00063 39.0 18.7 167 525-715 150-334 (374)
241 PF04190 DUF410: Protein of un 89.0 35 0.00076 36.4 25.1 167 488-688 2-169 (260)
242 COG4235 Cytochrome c biogenesi 88.9 8.8 0.00019 41.4 13.8 91 524-628 164-257 (287)
243 PF00515 TPR_1: Tetratricopept 88.9 0.89 1.9E-05 31.9 4.5 29 599-627 2-30 (34)
244 PF12968 DUF3856: Domain of Un 88.8 21 0.00046 33.6 14.9 114 558-673 9-133 (144)
245 COG0457 NrfG FOG: TPR repeat [ 88.7 22 0.00047 33.7 22.5 209 476-718 59-268 (291)
246 PRK11906 transcriptional regul 88.4 23 0.0005 40.6 17.5 110 462-586 281-400 (458)
247 TIGR03504 FimV_Cterm FimV C-te 88.3 1.2 2.6E-05 34.1 5.1 42 641-688 2-43 (44)
248 COG4785 NlpI Lipoprotein NlpI, 88.2 26 0.00057 36.4 15.9 221 436-692 65-287 (297)
249 PF09613 HrpB1_HrpK: Bacterial 88.2 4.9 0.00011 39.6 10.5 89 472-574 6-94 (160)
250 COG4649 Uncharacterized protei 88.2 31 0.00067 34.7 16.4 166 442-626 19-195 (221)
251 TIGR02561 HrpB1_HrpK type III 87.4 5.6 0.00012 38.7 10.2 88 473-574 7-94 (153)
252 PF07719 TPR_2: Tetratricopept 87.3 1.3 2.8E-05 30.8 4.5 29 599-627 2-30 (34)
253 PF13428 TPR_14: Tetratricopep 87.2 1.1 2.4E-05 33.8 4.4 28 559-586 2-29 (44)
254 PF07719 TPR_2: Tetratricopept 87.2 1.5 3.3E-05 30.4 4.9 32 477-508 2-33 (34)
255 COG4235 Cytochrome c biogenesi 87.1 9.1 0.0002 41.3 12.6 100 479-589 159-258 (287)
256 PF09613 HrpB1_HrpK: Bacterial 87.1 4.6 0.0001 39.8 9.6 77 524-614 18-94 (160)
257 KOG1839 Uncharacterized protei 87.0 5.7 0.00012 50.3 12.5 187 524-719 940-1132(1236)
258 PF09986 DUF2225: Uncharacteri 86.9 5.2 0.00011 41.5 10.5 99 572-672 91-197 (214)
259 PF13181 TPR_8: Tetratricopept 86.5 1.6 3.4E-05 30.5 4.6 31 599-629 2-32 (34)
260 PF10579 Rapsyn_N: Rapsyn N-te 86.4 5.7 0.00012 34.4 8.6 73 559-634 7-79 (80)
261 PF09986 DUF2225: Uncharacteri 86.0 8.8 0.00019 39.7 11.6 77 553-629 113-196 (214)
262 PF04184 ST7: ST7 protein; In 85.6 52 0.0011 38.2 18.0 66 553-622 254-319 (539)
263 KOG2610 Uncharacterized conser 85.0 54 0.0012 36.2 16.9 161 525-711 112-272 (491)
264 COG5187 RPN7 26S proteasome re 84.9 29 0.00063 37.4 14.7 137 576-723 93-229 (412)
265 PF04053 Coatomer_WDAD: Coatom 84.9 9.3 0.0002 44.0 12.3 131 479-666 298-428 (443)
266 PF12739 TRAPPC-Trs85: ER-Golg 84.8 62 0.0013 36.9 18.9 127 576-724 273-408 (414)
267 COG0457 NrfG FOG: TPR repeat [ 84.7 36 0.00078 32.1 23.6 221 489-747 36-257 (291)
268 KOG2376 Signal recognition par 84.3 95 0.0021 36.7 39.2 282 430-747 218-512 (652)
269 PF13174 TPR_6: Tetratricopept 84.2 1.7 3.8E-05 29.8 3.9 31 478-508 2-32 (33)
270 KOG0545 Aryl-hydrocarbon recep 83.9 11 0.00024 39.7 10.9 64 559-628 231-294 (329)
271 PF13174 TPR_6: Tetratricopept 83.8 1.5 3.3E-05 30.1 3.5 29 223-251 1-29 (33)
272 TIGR02561 HrpB1_HrpK type III 83.5 7 0.00015 38.1 8.8 77 524-614 18-94 (153)
273 KOG1464 COP9 signalosome, subu 83.1 41 0.00088 36.0 14.7 208 525-745 36-250 (440)
274 KOG0687 26S proteasome regulat 82.7 52 0.0011 36.2 15.7 159 578-747 84-242 (393)
275 PF11817 Foie-gras_1: Foie gra 82.7 68 0.0015 33.8 22.4 89 573-663 153-241 (247)
276 KOG4648 Uncharacterized conser 81.3 5.9 0.00013 43.4 8.1 92 524-629 105-196 (536)
277 PF04053 Coatomer_WDAD: Coatom 81.0 38 0.00083 39.1 15.3 98 523-628 268-377 (443)
278 KOG2041 WD40 repeat protein [G 80.8 1.4E+02 0.003 36.1 22.7 238 487-746 745-1041(1189)
279 PF02259 FAT: FAT domain; Int 80.5 91 0.002 33.8 23.2 138 594-741 142-307 (352)
280 PF05843 Suf: Suppressor of fo 80.2 51 0.0011 35.4 15.2 134 478-628 3-137 (280)
281 PF09670 Cas_Cas02710: CRISPR- 80.1 48 0.001 37.4 15.5 141 475-630 130-273 (379)
282 PF04190 DUF410: Protein of un 80.0 88 0.0019 33.3 18.4 158 570-756 2-171 (260)
283 KOG4648 Uncharacterized conser 78.7 6.8 0.00015 42.9 7.6 95 562-670 101-195 (536)
284 COG0790 FOG: TPR repeat, SEL1 78.7 66 0.0014 34.3 15.6 174 525-740 50-236 (292)
285 KOG2581 26S proteasome regulat 78.2 1.3E+02 0.0028 34.2 17.2 174 475-653 123-302 (493)
286 PF04910 Tcf25: Transcriptiona 77.8 66 0.0014 36.1 15.5 146 476-629 40-224 (360)
287 PF13428 TPR_14: Tetratricopep 77.7 3.9 8.4E-05 30.8 4.1 32 224-255 3-34 (44)
288 TIGR03504 FimV_Cterm FimV C-te 76.8 5.1 0.00011 30.7 4.4 40 561-604 2-41 (44)
289 PF07721 TPR_4: Tetratricopept 76.5 3.5 7.5E-05 27.5 3.1 24 477-500 2-25 (26)
290 PF10952 DUF2753: Protein of u 76.5 21 0.00046 33.7 9.1 68 601-670 4-80 (140)
291 KOG3616 Selective LIM binding 75.5 1.1E+02 0.0023 37.2 16.3 98 650-747 742-845 (1636)
292 KOG0545 Aryl-hydrocarbon recep 75.3 20 0.00044 37.8 9.6 105 557-669 177-293 (329)
293 PF10579 Rapsyn_N: Rapsyn N-te 75.3 18 0.00039 31.4 7.8 65 525-594 15-79 (80)
294 KOG2471 TPR repeat-containing 75.1 11 0.00023 43.3 8.1 119 525-649 249-380 (696)
295 PF10516 SHNi-TPR: SHNi-TPR; 74.2 5.7 0.00012 29.5 3.9 33 599-631 2-34 (38)
296 KOG4642 Chaperone-dependent E3 73.5 18 0.00038 38.1 8.7 97 525-635 19-115 (284)
297 PF04781 DUF627: Protein of un 73.4 55 0.0012 30.4 10.9 99 564-668 2-106 (111)
298 PF09670 Cas_Cas02710: CRISPR- 73.0 75 0.0016 35.9 14.5 132 524-671 139-272 (379)
299 KOG0551 Hsp90 co-chaperone CNS 72.7 25 0.00054 38.7 9.9 93 525-627 90-182 (390)
300 PF05843 Suf: Suppressor of fo 72.4 55 0.0012 35.2 12.8 135 561-718 4-139 (280)
301 KOG1920 IkappaB kinase complex 72.4 2.9E+02 0.0063 35.5 23.9 152 522-684 843-1043(1265)
302 KOG1839 Uncharacterized protei 71.8 67 0.0015 41.2 14.7 191 476-669 932-1128(1236)
303 PF04184 ST7: ST7 protein; In 71.2 56 0.0012 37.9 12.7 64 475-542 258-321 (539)
304 KOG2053 Mitochondrial inherita 70.6 2.8E+02 0.006 34.6 22.5 193 470-687 39-237 (932)
305 smart00028 TPR Tetratricopepti 69.7 6.4 0.00014 25.3 3.2 29 224-252 3-31 (34)
306 KOG0687 26S proteasome regulat 67.5 1.5E+02 0.0033 32.7 14.4 127 616-756 82-208 (393)
307 PF07721 TPR_4: Tetratricopept 67.3 6.6 0.00014 26.2 2.8 25 223-247 2-26 (26)
308 KOG4507 Uncharacterized conser 66.5 7.2 0.00016 45.4 4.5 100 558-670 607-706 (886)
309 KOG4507 Uncharacterized conser 64.9 6.6 0.00014 45.7 3.9 99 598-715 606-705 (886)
310 PF07163 Pex26: Pex26 protein; 64.7 1.4E+02 0.0029 32.4 13.2 96 563-665 88-183 (309)
311 smart00028 TPR Tetratricopepti 63.2 13 0.00028 23.7 3.8 31 477-507 2-32 (34)
312 KOG0551 Hsp90 co-chaperone CNS 63.0 34 0.00074 37.6 8.5 107 553-669 76-182 (390)
313 PF04910 Tcf25: Transcriptiona 60.2 2.9E+02 0.0062 31.0 19.1 154 557-716 39-223 (360)
314 KOG1538 Uncharacterized conser 60.0 3.7E+02 0.008 32.5 16.5 150 482-666 638-799 (1081)
315 PF02259 FAT: FAT domain; Int 59.4 2.6E+02 0.0056 30.2 23.8 97 633-739 141-265 (352)
316 COG3629 DnrI DNA-binding trans 56.0 89 0.0019 33.8 10.3 87 473-565 150-236 (280)
317 PF13431 TPR_17: Tetratricopep 54.7 12 0.00026 26.7 2.4 22 557-578 12-33 (34)
318 PF14853 Fis1_TPR_C: Fis1 C-te 54.4 55 0.0012 26.1 6.4 28 559-586 2-29 (53)
319 PF07079 DUF1347: Protein of u 52.4 4.3E+02 0.0094 30.7 16.9 90 154-251 63-157 (549)
320 KOG3783 Uncharacterized conser 52.2 4.6E+02 0.01 30.9 21.7 241 478-757 269-522 (546)
321 PF07079 DUF1347: Protein of u 50.3 4.6E+02 0.01 30.4 17.7 102 476-587 6-108 (549)
322 KOG1497 COP9 signalosome, subu 49.8 3.6E+02 0.0078 29.8 13.4 130 473-607 100-231 (399)
323 PF15015 NYD-SP12_N: Spermatog 49.3 3E+02 0.0064 31.6 13.1 104 471-583 171-287 (569)
324 KOG1550 Extracellular protein 47.1 4.9E+02 0.011 30.9 15.8 154 531-714 227-392 (552)
325 KOG4642 Chaperone-dependent E3 46.9 93 0.002 32.9 8.3 97 563-673 15-111 (284)
326 KOG0276 Vesicle coat complex C 46.6 1.6E+02 0.0034 35.2 10.8 99 524-666 594-692 (794)
327 COG4649 Uncharacterized protei 45.8 3.4E+02 0.0074 27.6 14.6 146 526-686 68-213 (221)
328 PRK13184 pknD serine/threonine 44.8 86 0.0019 39.6 9.2 94 486-588 485-582 (932)
329 KOG0985 Vesicle coat protein c 44.4 6.7E+02 0.015 32.1 15.8 123 443-585 1104-1247(1666)
330 KOG2053 Mitochondrial inherita 43.1 7.7E+02 0.017 30.9 19.7 86 487-586 20-105 (932)
331 TIGR02710 CRISPR-associated pr 42.1 5.6E+02 0.012 29.0 14.9 146 473-630 127-278 (380)
332 PF13431 TPR_17: Tetratricopep 41.3 18 0.0004 25.7 1.7 23 221-243 12-34 (34)
333 KOG2561 Adaptor protein NUB1, 41.3 4.7E+02 0.01 30.1 13.1 144 478-622 165-339 (568)
334 PF10255 Paf67: RNA polymerase 41.3 1.9E+02 0.004 33.1 10.4 68 524-591 130-197 (404)
335 KOG2908 26S proteasome regulat 41.2 5.5E+02 0.012 28.7 16.1 97 489-586 88-185 (380)
336 PF04348 LppC: LppC putative l 41.0 9 0.00019 45.3 0.0 95 524-626 32-126 (536)
337 PF06552 TOM20_plant: Plant sp 40.8 1.5E+02 0.0033 30.0 8.5 72 558-629 25-104 (186)
338 PF12854 PPR_1: PPR repeat 40.7 49 0.0011 23.5 3.8 27 476-502 7-33 (34)
339 PF10516 SHNi-TPR: SHNi-TPR; 39.6 59 0.0013 24.1 4.1 32 559-590 2-33 (38)
340 PF11207 DUF2989: Protein of u 39.2 2.3E+02 0.0049 29.2 9.7 82 527-618 117-198 (203)
341 PF14561 TPR_20: Tetratricopep 39.2 2E+02 0.0044 25.4 8.3 35 597-631 21-55 (90)
342 PF00244 14-3-3: 14-3-3 protei 38.9 4.8E+02 0.01 27.3 17.3 192 561-761 4-205 (236)
343 KOG3024 Uncharacterized conser 37.7 5.6E+02 0.012 27.9 12.5 60 644-710 91-151 (312)
344 PRK10304 ferritin; Provisional 36.8 86 0.0019 31.1 6.2 73 190-268 51-123 (165)
345 KOG1550 Extracellular protein 36.6 4.4E+02 0.0096 31.3 13.2 134 574-738 228-372 (552)
346 PHA02537 M terminase endonucle 36.4 3.3E+02 0.0072 28.6 10.6 56 676-731 165-223 (230)
347 COG3107 LppC Putative lipoprot 36.1 7.9E+02 0.017 29.1 14.2 86 524-619 71-157 (604)
348 KOG3024 Uncharacterized conser 35.2 4.3E+02 0.0093 28.8 11.2 100 560-665 48-152 (312)
349 PRK10941 hypothetical protein; 34.9 1.7E+02 0.0037 31.5 8.5 70 554-629 177-246 (269)
350 KOG2908 26S proteasome regulat 34.5 7E+02 0.015 27.9 13.0 101 526-628 85-187 (380)
351 PRK13184 pknD serine/threonine 34.4 1E+02 0.0022 39.1 7.5 99 525-628 484-582 (932)
352 PF04781 DUF627: Protein of un 33.9 3.9E+02 0.0085 24.8 11.2 26 482-507 2-27 (111)
353 KOG2817 Predicted E3 ubiquitin 33.5 7.2E+02 0.016 28.2 13.0 145 435-586 77-224 (394)
354 PF06552 TOM20_plant: Plant sp 33.0 1.2E+02 0.0025 30.8 6.3 79 638-720 25-107 (186)
355 PF07163 Pex26: Pex26 protein; 32.7 6.8E+02 0.015 27.3 12.4 131 485-622 44-182 (309)
356 PF10938 YfdX: YfdX protein; 32.6 4.8E+02 0.011 25.5 12.0 109 478-586 4-145 (155)
357 PRK10941 hypothetical protein; 31.3 2.6E+02 0.0057 30.1 9.2 59 524-590 189-247 (269)
358 PF03745 DUF309: Domain of unk 30.8 92 0.002 25.7 4.4 56 563-620 4-61 (62)
359 KOG0890 Protein kinase of the 30.5 8.8E+02 0.019 33.9 15.0 109 555-671 1667-1786(2382)
360 PF13812 PPR_3: Pentatricopept 30.2 1.1E+02 0.0023 20.7 4.2 27 478-504 3-29 (34)
361 COG4941 Predicted RNA polymera 29.5 8E+02 0.017 27.5 12.3 131 484-629 264-396 (415)
362 PF14853 Fis1_TPR_C: Fis1 C-te 29.2 1.3E+02 0.0027 24.1 4.8 27 726-752 1-27 (53)
363 KOG0276 Vesicle coat complex C 29.2 4.4E+02 0.0095 31.7 10.8 50 524-586 645-694 (794)
364 KOG3364 Membrane protein invol 28.7 4.3E+02 0.0094 25.7 9.0 67 557-627 31-100 (149)
365 KOG1538 Uncharacterized conser 28.2 5.1E+02 0.011 31.3 11.2 90 562-665 636-728 (1081)
366 KOG0686 COP9 signalosome, subu 28.1 7.8E+02 0.017 28.2 12.2 76 466-544 140-215 (466)
367 TIGR01716 RGG_Cterm transcript 27.9 3.8E+02 0.0082 27.1 9.6 80 557-636 127-206 (220)
368 PF14561 TPR_20: Tetratricopep 27.6 2.5E+02 0.0054 24.8 7.0 30 558-587 22-51 (90)
369 smart00671 SEL1 Sel1-like repe 27.2 1.1E+02 0.0024 21.0 3.9 32 681-714 2-33 (36)
370 KOG2659 LisH motif-containing 26.9 4.5E+02 0.0097 27.6 9.5 104 481-589 31-134 (228)
371 PF10938 YfdX: YfdX protein; 26.7 1.5E+02 0.0033 29.0 5.9 103 524-626 10-145 (155)
372 PRK06770 hypothetical protein; 26.6 77 0.0017 31.8 3.8 75 125-201 65-144 (180)
373 PF13041 PPR_2: PPR repeat fam 26.4 1.2E+02 0.0026 23.0 4.3 29 477-505 4-32 (50)
374 KOG0686 COP9 signalosome, subu 26.3 3.2E+02 0.0069 31.2 8.8 41 463-503 170-214 (466)
375 smart00546 CUE Domain that may 26.1 1.9E+02 0.004 21.6 5.1 38 156-194 3-40 (43)
376 COG4976 Predicted methyltransf 25.8 1.3E+02 0.0028 31.7 5.4 53 526-586 5-57 (287)
377 PRK12798 chemotaxis protein; R 25.7 1.1E+03 0.023 27.2 21.4 220 483-735 87-306 (421)
378 KOG0376 Serine-threonine phosp 25.6 49 0.0011 38.0 2.6 91 524-628 12-102 (476)
379 TIGR00756 PPR pentatricopeptid 25.2 1.2E+02 0.0027 20.1 3.8 26 479-504 3-28 (35)
380 PF03745 DUF309: Domain of unk 24.8 2.7E+02 0.0059 22.9 6.2 55 525-581 8-62 (62)
381 PF14858 DUF4486: Domain of un 24.1 7.6E+02 0.017 29.3 11.7 91 561-667 154-253 (542)
382 PF05470 eIF-3c_N: Eukaryotic 23.7 5.2E+02 0.011 31.2 10.7 68 474-544 454-528 (595)
383 KOG2114 Vacuolar assembly/sort 23.6 1.5E+03 0.033 28.3 14.9 53 525-585 343-395 (933)
384 COG5187 RPN7 26S proteasome re 23.4 1E+03 0.022 26.2 13.9 119 616-745 93-211 (412)
385 TIGR03362 VI_chp_7 type VI sec 23.2 1E+03 0.022 26.1 17.5 77 563-642 218-294 (301)
386 KOG3364 Membrane protein invol 23.0 4.2E+02 0.0092 25.7 7.8 69 678-753 30-98 (149)
387 TIGR03362 VI_chp_7 type VI sec 22.6 4E+02 0.0087 29.2 8.8 71 526-601 223-293 (301)
388 COG3903 Predicted ATPase [Gene 21.5 1.1E+03 0.024 27.0 12.0 97 557-653 231-327 (414)
389 PF01535 PPR: PPR repeat; Int 21.0 1.4E+02 0.0029 19.6 3.2 25 479-503 3-27 (31)
390 PHA02537 M terminase endonucle 20.9 7.8E+02 0.017 25.9 10.1 40 597-636 168-216 (230)
391 TIGR00823 EIIA-LAC phosphotran 20.4 2E+02 0.0043 26.1 4.9 34 474-507 15-48 (99)
No 1
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-43 Score=371.18 Aligned_cols=459 Identities=24% Similarity=0.203 Sum_probs=404.1
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHhCCCchHHHHHHHHHHhhcCCHHHHHHHHHHhhhhhcCCCCCC
Q 004081 129 NWQMQGYLMEQADAIEKHG-SSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFD 207 (775)
Q Consensus 129 ~~~~~~~l~~q~~~l~~~~-~~~~~~~l~~~~~~l~~~~p~~~~~h~l~yl~~~~~~dy~~A~d~LhryFD~~~~~~~~d 207 (775)
++|++.|+..|..+++.++ ++.+|-++|+-++.+.+..|++. +||+.|+|.+|+.||.+++.+|+++||.+...
T Consensus 18 ~kqa~fF~~~q~~ll~n~elkal~p~~lqk~v~~ll~vlp~~~-p~~l~y~n~lrv~d~~s~l~sL~e~~dr~~l~---- 92 (482)
T KOG4322|consen 18 NKQATFFTPHQLTLLLNIELKALRPIQLQKCVPFLDLVLPYFN-PNDLQYQNLLRVHDITSHLPSLIEEYDRYSLL---- 92 (482)
T ss_pred chhhhhccHHHHHHHHhhhhhccCchhhhcCchHHHHhccccC-hhhhccchhhHHHHHHhhhhHHHHHHHhhhhh----
Confidence 8999999999999999999 89999999999999999999999 99999999999999999999999999998532
Q ss_pred CCCCCCCCCCcchhhhHHhhHHHHHHhhCChHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhhhhhhccccccccCCCC
Q 004081 208 FAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSS 287 (775)
Q Consensus 208 r~~~~~~~~~~~~~qyAlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe~~D~~cL~~al~wl~~l~~~~g~~~~~~~~g~~ 287 (775)
..+| |++.|+|.+|..||| ..++.|+|+.|||.+|+.|++.|..|.+.+-.+.+.
T Consensus 93 ----------eegy-y~~~nla~Lhe~fgh----l~al~eai~~aqe~~dh~~l~~~~~w~i~Lr~~~~~---------- 147 (482)
T KOG4322|consen 93 ----------EEGY-YSLHNLADLHEIFGH----LGALIEGIYDAQEEADHMLLSSSSLWSIFLRKCVVE---------- 147 (482)
T ss_pred ----------hhhH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHccchhhHhccchHHHHHHhhhhh----------
Confidence 1246 999999999999999 889999999999999999999999998877655432
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhccCCccccCCCcccccccCCchhHHHHHHh
Q 004081 288 YSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRL 367 (775)
Q Consensus 288 ~~~~~~~~~~~~~q~q~l~~L~~~~~ra~el~l~~L~s~~~l~~ak~~l~~g~~p~~~~g~~~~~~~~~~pa~v~e~l~~ 367 (775)
..+.+++++-+
T Consensus 148 -------------------seq~Sv~~a~~-------------------------------------------------- 158 (482)
T KOG4322|consen 148 -------------------SEQFSVEQAVQ-------------------------------------------------- 158 (482)
T ss_pred -------------------HHHHHHHHhhh--------------------------------------------------
Confidence 12333434333
Q ss_pred hcccccccccccccccCCCcchHHHHhhhccCCCcchhhhcccCCCCccccccccCCCCCchhhHhhhhHHHHHHHHHHH
Q 004081 368 ASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWE 447 (775)
Q Consensus 368 ~~~l~sd~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~g~~~~l~aalW~ 447 (775)
|...||++.+.+++-. ..+ -.+|+
T Consensus 159 --------------------f~~s~Lq~~~~~~~fq------------------------------~~a------~~~W~ 182 (482)
T KOG4322|consen 159 --------------------FFKSFLQYRAPSMDFQ------------------------------HEA------IEFWK 182 (482)
T ss_pred --------------------hhHHHHHhhccccCcc------------------------------hhh------hHHHH
Confidence 2233455555433211 011 12999
Q ss_pred HhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc-hHHHHHH-HhhHHHH
Q 004081 448 AYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SRILLLK-LQLLHER 525 (775)
Q Consensus 448 ~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~-~~~~~l~-l~l~~~~ 525 (775)
.||...|+.. .++......+++.+|..++.+|-...+...|++ +++||.... ...|++. ....++.
T Consensus 183 lYGrhemA~~-----------~s~~~llq~al~s~a~~~a~qg~~ql~~v~L~h-Kqrfp~~~~~a~~wml~d~~~v~~~ 250 (482)
T KOG4322|consen 183 IYGRHELANL-----------ASNKTLLQLALGSIAVSRSSQGIEQLTQVQLEH-KQRFPCALPLAMKWMLHDLLEVEEN 250 (482)
T ss_pred HhchhHHHHh-----------hcchhHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHhcCCCcHHHHHHHHHHhHHHHHh
Confidence 9999999983 234557789999999999999999999999999 999998887 4588886 4455688
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
.+..++|..|...+... |.....+..++.+.++.+..+++.|.++++.++..|.........+.|++.+|
T Consensus 251 ~~~~~~~h~al~~~~g~----------d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~a 320 (482)
T KOG4322|consen 251 NLNTSYYHKALNSWFGG----------DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIA 320 (482)
T ss_pred hhhhhHHHHHHHHhhcc----------hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 99999999998655543 66668899999999999999999999999999999999888999999999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHH
Q 004081 606 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 685 (775)
Q Consensus 606 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~ 685 (775)
.++.+.|.+..+++++.+++..+.+..+++.++.+.+.|+..|+.+|.+ ++|+.++..++|.|+.+|..+++|++++.
T Consensus 321 e~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~p--k~Al~lLh~a~h~Il~~GgL~drara~fv 398 (482)
T KOG4322|consen 321 EARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSP--KAALPLLHTAVHLILVQGGLDDRARAIFV 398 (482)
T ss_pred HHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCCh--HHHHHHHHhhhhHHHhccchhhcceeEEE
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhccCCCC
Q 004081 686 EAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENENRQ 765 (775)
Q Consensus 686 LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~~~~~~ 765 (775)
.++|+++.+.....++.+.+.+++++|...|.+++++.+..+|.|.+|..|+.+||.++||++|..||++.+.+++ |+
T Consensus 399 fanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~--pr 476 (482)
T KOG4322|consen 399 FANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL--PR 476 (482)
T ss_pred EEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC--cc
Confidence 9999999887767888999999999999999999999999999999999999999999999999999999999997 65
Q ss_pred CCC
Q 004081 766 DEV 768 (775)
Q Consensus 766 ~~~ 768 (775)
.-.
T Consensus 477 ~~l 479 (482)
T KOG4322|consen 477 WLL 479 (482)
T ss_pred ccc
Confidence 443
No 2
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=99.86 E-value=9.6e-22 Score=176.12 Aligned_cols=93 Identities=44% Similarity=0.760 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCCcchhhhHHhhHHHHHHhhCChHHHHHHHHHHHHHH
Q 004081 173 HFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLS 252 (775)
Q Consensus 173 h~l~yl~~~~~~dy~~A~d~LhryFD~~~~~~~~dr~~~~~~~~~~~~~qyAlLnlA~lh~~FG~~~~A~~al~EAi~~A 252 (775)
||++|+++|+.|||++|+|+||+|||+.....+ . +....++||+||+|.+|..||++++|+.+++|||++|
T Consensus 1 ~~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~-~--------~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 1 HYLRYLNALRSGDYSEALDALHRYFDYAKQSNN-S--------SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc-c--------hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999873211 0 0124799999999999999999999999999999999
Q ss_pred HHccchHHHHHHHHHHHhhhhh
Q 004081 253 QQHSNDTCLAYTLAAISNLLSE 274 (775)
Q Consensus 253 qe~~D~~cL~~al~wl~~l~~~ 274 (775)
||++|..||++|+.|++++.++
T Consensus 72 re~~D~~~l~~al~~~~~l~~~ 93 (94)
T PF12862_consen 72 RENGDRRCLAYALSWLANLLKK 93 (94)
T ss_pred HHHCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988754
No 3
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-15 Score=162.09 Aligned_cols=273 Identities=14% Similarity=0.068 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH---HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL---KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l---~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
...++.||.++...++|+.|++.-.+=+...+.+++...-.- .++ ...-..|.|++|..++.+-+.++++++
T Consensus 55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG---NtlKv~G~fdeA~~cc~rhLd~areLg-- 129 (639)
T KOG1130|consen 55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG---NTLKVKGAFDEALTCCFRHLDFARELG-- 129 (639)
T ss_pred HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc---chhhhhcccchHHHHHHHHhHHHHHHh--
Confidence 456788899999999999999998877777766665421110 122 234467999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC
Q 004081 553 DMDLKTEASLRHARTLLAANQ--------------------FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG 612 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd--------------------~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G 612 (775)
|..++..++++++.+|.++|. ++.|.+.+.+-+.+.+..||+....|+.-.+|..|.-.|
T Consensus 130 Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLG 209 (639)
T KOG1130|consen 130 DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLG 209 (639)
T ss_pred HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeec
Confidence 999999999999999999885 456888888889999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 613 NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 613 ~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
+++.|+..-..=|.|+++.|++-.+-+|.-+||..+.-+|.. +.|.+++...+.+..+.|++..+|+..+.||++|--
T Consensus 210 df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f--e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 210 DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF--ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc--HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999987 999999999999999999999999999999999887
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhcc
Q 004081 693 DPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 761 (775)
Q Consensus 693 ~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~~ 761 (775)
..++.+|+.|+.+=+++.+.++++.++.++.+-||..|..+|....|-.++....+....+-|
T Consensus 288 ------l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D 350 (639)
T KOG1130|consen 288 ------LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVND 350 (639)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 788999999999999999999999999999999999999999999998887777777666554
No 4
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.62 E-value=1.2e-14 Score=155.17 Aligned_cols=274 Identities=15% Similarity=0.102 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
|.-+.-=|-.+++.|++......++.|.+.-.+- -.-...|--|+ ...+++.+||..|.++...=+.+++.++ |..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeD-l~tLSAIYsQL-GNAyfyL~DY~kAl~yH~hDltlar~lg--dkl 92 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTED-LSTLSAIYSQL-GNAYFYLKDYEKALKYHTHDLTLARLLG--DKL 92 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH-HHHHHHHHHHh-cchhhhHhhHHHHHhhhhhhHHHHHHhc--chh
Confidence 4444444667788999999999999888653210 01122222122 2578999999999999998888888888 888
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCCh--------------------h
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA--------------------V 615 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~--------------------~ 615 (775)
+++.+.-+++.++-.+|.|++|+.+..+-+.++++.||+..+.|++.++|.||...|.. +
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876642 4
Q ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 004081 616 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 695 (775)
Q Consensus 616 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~ 695 (775)
.|..+++.-|++.+..|++.-..++.-.||..|.-+|+. ++|+...+.-|.+..++||+..+-+|+..||+||+-
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf--~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif--- 247 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDF--DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF--- 247 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccH--HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh---
Confidence 556778888999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhcc
Q 004081 696 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 761 (775)
Q Consensus 696 ~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~~ 761 (775)
.|.++.|++++..++.+..+++++..+++.-|-||..|--+.++..|..|-.....+.+.++|
T Consensus 248 ---lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D 310 (639)
T KOG1130|consen 248 ---LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED 310 (639)
T ss_pred ---hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997766555555554443
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=5.6e-12 Score=143.61 Aligned_cols=267 Identities=17% Similarity=0.092 Sum_probs=226.3
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh-cCchH---HHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSR---ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMAS 547 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~-~~~~~---~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~ 547 (775)
......+.++|+..++.+|+|+.|...+++|.+.... .+... ..++. .+...++..++|.+|..+|..++++..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~--~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLN--ILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3456777888999999999999999999999987432 23211 11222 122478999999999999999999988
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-cccchh-HHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 004081 548 SVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQVE-NASVLLLLAEIHKKSGNAVLGIPYALASL 625 (775)
Q Consensus 548 ~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-~gd~~~-~a~aLl~lA~i~~~~G~~~~Al~~l~~AL 625 (775)
.+-+.|-...+.++.+++.++...|+|++|..++++++.+... .+.... .+..+..++.++...++++.|..++.+++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 7777777788999999999999999999999999999998876 233333 35569999999999999999999999999
Q ss_pred HHHH-HhCCcH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCC--HHHHHHHHHHHHHhhhcCCCCCCCCC
Q 004081 626 SFCQ-LLNLDL-LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG--LELRARAFIAEAKCLLSDPSFSVSQN 701 (775)
Q Consensus 626 ~la~-~~g~~~-~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~--~~l~A~a~~~LAr~~lA~~~~~~~g~ 701 (775)
.+.. ..|-.. ..+....+||.++..+|+. ++|++++++|+...++.++ .+..+..+..||..+.. ...
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~--~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~------~k~ 424 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKY--KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE------LKK 424 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH------hcc
Confidence 9984 455555 8899999999999999998 9999999999999999877 68889999999988877 788
Q ss_pred hHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004081 702 PEAVLDPLRQASEELQVLED-HELAAEAFYLIAIVFDKLGRLAEREEA 748 (775)
Q Consensus 702 ~~~Al~~L~~Al~~f~~l~~-~~~~~evl~~LA~l~~~lGd~~~A~~a 748 (775)
+.+|-..+++|..+...+|. ....--++..||.+|...|+.+.|.+.
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence 88999999999999987765 448888999999999999999999773
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.52 E-value=2.6e-10 Score=135.59 Aligned_cols=234 Identities=15% Similarity=0.015 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
..+.++..+|..+..+|++++|+..++.+.+..|..... + +.++ ..++..|++++|...+++++.+.+ .
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~--~-~~la---~~~~~~g~~~eA~~~~~~al~~~p----~- 397 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS--Y-IKRA---SMNLELGDPDKAEEDFDKALKLNS----E- 397 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--H-HHHH---HHHHHCCCHHHHHHHHHHHHHhCC----C-
Confidence 566789999999999999999999999999887643221 1 2222 256789999999999999988622 1
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
...+++.++.++...|++++|+..+++++.. ......++..+|.++...|++++|+..+.+++.+...
T Consensus 398 ---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~--- 465 (615)
T TIGR00990 398 ---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE--- 465 (615)
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---
Confidence 2467899999999999999999999999873 2334667889999999999999999999999876421
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHH-HhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA-KCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LA-r~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
.+.+...+|.++..+|+. ++|+..++.++.+.............+...+ ..+.. .|++.+|+.++++|
T Consensus 466 ---~~~~~~~lg~~~~~~g~~--~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~------~~~~~eA~~~~~kA 534 (615)
T TIGR00990 466 ---APDVYNYYGELLLDQNKF--DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW------KQDFIEAENLCEKA 534 (615)
T ss_pred ---ChHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH------hhhHHHHHHHHHHH
Confidence 246677899999999997 9999999999887544333222221222222 12222 58899999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 713 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 713 l~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+..- + .-..++..+|.++...|+.++|.+
T Consensus 535 l~l~-----p-~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 535 LIID-----P-ECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HhcC-----C-CcHHHHHHHHHHHHHccCHHHHHH
Confidence 8752 1 122367889999999999999866
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.49 E-value=6.3e-12 Score=140.15 Aligned_cols=228 Identities=18% Similarity=0.097 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
....++.|||.++-..+.|+.|.....+|+..-|. +....-.++. .+..+|..+.|...+++++++-+.
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn---~A~a~gNla~---iYyeqG~ldlAI~~Ykral~~~P~----- 318 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN---HAVAHGNLAC---IYYEQGLLDLAIDTYKRALELQPN----- 318 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc---chhhccceEE---EEeccccHHHHHHHHHHHHhcCCC-----
Confidence 34677888888888888888888888777754331 1111112332 466788888888888888876331
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
-..+..+++..+...|+..||.+++.++|.+|- ..++++.++|.|+...|..+.|..++..|++..-+
T Consensus 319 ---F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p------~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~--- 386 (966)
T KOG4626|consen 319 ---FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP------NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE--- 386 (966)
T ss_pred ---chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh---
Confidence 345778888888888888888888888887553 34778888888888888888888888888877643
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 713 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al 713 (775)
-+.+..+||.++.+.|.. ++|+.++.+++.+-- .-|.++..+|.++-. .|+...|+..+.+|.
T Consensus 387 ---~aaa~nNLa~i~kqqgnl--~~Ai~~YkealrI~P------~fAda~~NmGnt~ke------~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 387 ---FAAAHNNLASIYKQQGNL--DDAIMCYKEALRIKP------TFADALSNMGNTYKE------MGDVSAAIQCYTRAI 449 (966)
T ss_pred ---hhhhhhhHHHHHHhcccH--HHHHHHHHHHHhcCc------hHHHHHHhcchHHHH------hhhHHHHHHHHHHHH
Confidence 356677788888888887 888888888865531 346678888887777 788888888887775
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 714 EELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 714 ~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
. ...--+++...||.+|...|..++|..
T Consensus 450 ~------~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 450 Q------INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred h------cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 4 334567788888888888888887755
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.49 E-value=3.4e-10 Score=143.73 Aligned_cols=480 Identities=13% Similarity=0.002 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHHHhhcCCHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 004081 132 MQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQP 211 (775)
Q Consensus 132 ~~~~l~~q~~~l~~~~~~~~~~~l~~~~~~l~~~~p~~~~~h~l~yl~~~~~~dy~~A~d~LhryFD~~~~~~~~dr~~~ 211 (775)
...||-.|+...+..+ .++..++.+..+....|+=|++.+....-+++.||+..|...+.+-......... -+...
T Consensus 27 ~~~~Ll~q~~~~~~~~---~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~-~~~~~ 102 (1157)
T PRK11447 27 AQQQLLEQVRLGEATH---REDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNA-YRSSR 102 (1157)
T ss_pred HHHHHHHHHHHHHhhC---ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChH-HHHHH
Confidence 3455888999888766 3466788899999999999999999999999999999999999998887642100 00000
Q ss_pred CCCCCCcchhhhHHhhHHHHHHhhCChHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhhhhhhccccccccCCCCCCCC
Q 004081 212 SIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPI 291 (775)
Q Consensus 212 ~~~~~~~~~~qyAlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe~~D~~cL~~al~wl~~l~~~~g~~~~~~~~g~~~~~~ 291 (775)
..-.....-.-..|.+|.+...-|.+++|+..++.++... .+...++. .-|. .+....|+
T Consensus 103 -~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~---p~~~~la~-~y~~-~~~~~~g~-------------- 162 (1157)
T PRK11447 103 -TTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA---PPELDLAV-EYWR-LVAKLPAQ-------------- 162 (1157)
T ss_pred -HHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC---CCChHHHH-HHHH-HHhhCCcc--------------
Confidence 0000000011135888999999999999999999998642 23323322 1121 11111111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhccCCccccCCCcccccccCCchhHHHHHHhhccc
Q 004081 292 TSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHL 371 (775)
Q Consensus 292 ~~~~~~~~~q~q~l~~L~~~~~ra~el~l~~L~s~~~l~~ak~~l~~g~~p~~~~g~~~~~~~~~~pa~v~e~l~~~~~l 371 (775)
.++.+..|++.++.- |.- .-..+..++.-...|+. ..+.+.+.+....
T Consensus 163 ---------~~~A~~~L~~ll~~~-----P~~-~~~~~~LA~ll~~~g~~-----------------~eAl~~l~~~~~~ 210 (1157)
T PRK11447 163 ---------RPEAINQLQRLNADY-----PGN-TGLRNTLALLLFSSGRR-----------------DEGFAVLEQMAKS 210 (1157)
T ss_pred ---------HHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHccCCH-----------------HHHHHHHHHHhhC
Confidence 155666777644442 211 11233344444444432 2334444332111
Q ss_pred ccccccccccccCCCcchHHHHhhhccCCCcchhhhcccCCCCccccccccCCCCCchhhHhhhhHHHHHHHHHHHHhCc
Q 004081 372 ISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGS 451 (775)
Q Consensus 372 ~sd~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~g~~~~l~aalW~~~G~ 451 (775)
... .......|++.+... +. ...........+..+..
T Consensus 211 ~~~----------~~~aa~~~~~~l~~~------------~~---------------------~~~~~~~l~~~l~~~p~ 247 (1157)
T PRK11447 211 PAG----------RDAAAQLWYGQIKDM------------PV---------------------SDASVAALQKYLQVFSD 247 (1157)
T ss_pred CCc----------hHHHHHHHHHHHhcc------------CC---------------------ChhhHHHHHHHHHHCCC
Confidence 000 000001111111100 00 00000111111222211
Q ss_pred HH-HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC
Q 004081 452 AP-LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG 530 (775)
Q Consensus 452 ~~-La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G 530 (775)
.. ....... +........+.. .....+|..+...|++++|...++++.+..|.... ....++ ..++..|
T Consensus 248 ~~~~~~A~~~-L~~~~~~~~dp~---~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~---a~~~Lg---~~~~~~g 317 (1157)
T PRK11447 248 GDSVAAARSQ-LAEQQKQLADPA---FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE---ALGALG---QAYSQQG 317 (1157)
T ss_pred chHHHHHHHH-HHHHHHhccCcc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHH---HHHHHcC
Confidence 11 1000000 000000001111 11234577888899999999999999988764322 112222 3678999
Q ss_pred CHHHHHHHHHHHhhhhhcCCCCCh------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 531 HLKLAQKVCDELGVMASSVTGVDM------DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 531 ~~~~A~~~l~~ll~L~~~~~~~D~------~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
++++|...+++++.+.+.....+. ..........+..+...|++++|+..+++++.. ......++..+
T Consensus 318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~L 391 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGL 391 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence 999999999999987442211000 001223456688889999999999999999974 22346788899
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc---CCHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH---GGLELRAR 681 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~---G~~~l~A~ 681 (775)
|.++...|++++|+..+.+++.+.... ..++..|+.++.. +.. ++|+..++...+.-... ....++..
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~p~~------~~a~~~L~~l~~~-~~~--~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMDPGN------TNAVRGLANLYRQ-QSP--EKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCH--HHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999875322 3456678888754 455 89999887654432110 01123345
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 682 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 682 a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.+..+|+++.. .|++++|+..+++|++..-. -..+++.+|.+|...|+.++|..
T Consensus 463 ~~~~~a~~~~~------~g~~~eA~~~~~~Al~~~P~------~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 463 RLAQQAEALEN------QGKWAQAAELQRQRLALDPG------SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHHHHHH------CCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 67778888888 99999999999999976421 23478899999999999999877
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.44 E-value=2.7e-09 Score=129.52 Aligned_cols=227 Identities=17% Similarity=0.043 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.++..+|..+...|++++|...++++.+..|..... ...+. ..+...|++++|...++++....+ +
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la---~~~~~~g~~~~A~~~~~~~~~~~~-----~--- 531 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA---AANLA---RIDIQEGNPDDAIQRFEKVLTIDP-----K--- 531 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH---HHHHH---HHHHHCCCHHHHHHHHHHHHHhCc-----C---
Confidence 456777777778888888888888777655432211 11121 346677888888888887776422 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
...+...++.++...|++++|+..+++++.. ..........++.++...|++++|+..+.+++.....
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------ 599 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAEL------NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD------ 599 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------
Confidence 2456677777788888888888888777652 1223456667788888888888888877776543211
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
...+...++.++...|+. ++|+..++.++..-.. ...++..+|.++.. .|++++|+..++++++..
T Consensus 600 ~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~------~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDL--NKAVSSFKKLLALQPD------SALALLLLADAYAV------MKNYAKAITSLKRALELK 665 (899)
T ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH------cCCHHHHHHHHHHHHhcC
Confidence 134566678888888877 8888888877654211 23466777888877 788888888888887643
Q ss_pred HhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 717 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 717 ~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
. .-..+...++.++...|+.++|.+..
T Consensus 666 ~------~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 666 P------DNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred C------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 12356677888888888888876633
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.44 E-value=1.6e-09 Score=137.61 Aligned_cols=161 Identities=16% Similarity=0.039 Sum_probs=118.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 642 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 642 (775)
..+..+...|++++|++.++ .......+++.+|.++.+.|++++|+..+.+++.+.-. ...++.
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~----------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~ 641 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLR----------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARL 641 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHH----------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 34555555555555555543 11223456788999999999999999999999987432 256788
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCH
Q 004081 643 TLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH 722 (775)
Q Consensus 643 ~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~ 722 (775)
.++.++...|+. ++|++.++.++..-. ....++..+|.++.. .|++++|+..+++++.....-...
T Consensus 642 ~la~~~~~~g~~--~eA~~~l~~ll~~~p------~~~~~~~~la~~~~~------~g~~~eA~~~~~~al~~~~~~~~~ 707 (1157)
T PRK11447 642 GLIEVDIAQGDL--AAARAQLAKLPATAN------DSLNTQRRVALAWAA------LGDTAAAQRTFNRLIPQAKSQPPS 707 (1157)
T ss_pred HHHHHHHHCCCH--HHHHHHHHHHhccCC------CChHHHHHHHHHHHh------CCCHHHHHHHHHHHhhhCccCCcc
Confidence 999999999998 999999997765321 122356678888888 999999999999998876444333
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004081 723 ELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 756 (775)
Q Consensus 723 ~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~ 756 (775)
...+.++..+|.++...|++++|.+ .|++..
T Consensus 708 ~~~a~~~~~~a~~~~~~G~~~~A~~---~y~~Al 738 (1157)
T PRK11447 708 MESALVLRDAARFEAQTGQPQQALE---TYKDAM 738 (1157)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHH---HHHHHH
Confidence 3456778888999999999999877 444443
No 11
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.44 E-value=5.8e-11 Score=125.81 Aligned_cols=285 Identities=13% Similarity=0.040 Sum_probs=232.3
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH---HHHHHHhhHHHHHHhcCCHHHHHHHHHH
Q 004081 465 CFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR---ILLLKLQLLHERSLHRGHLKLAQKVCDE 541 (775)
Q Consensus 465 ~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~---~~~l~l~l~~~~al~~G~~~~A~~~l~~ 541 (775)
++.+...++-...++.||+...-+.-+|.+++.+-+..... |.....+ ...+.++ ..++-.+-+..+.+.++.
T Consensus 72 ~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~---~Ahlgls~fq~~Lesfe~ 147 (518)
T KOG1941|consen 72 TARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMG---NAHLGLSVFQKALESFEK 147 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHH---HHhhhHHHHHHHHHHHHH
Confidence 44555566677889999999887777888887776544321 1111111 1111222 367788889999999999
Q ss_pred HhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhH----HHHHHHHHHHHHhcCChhhH
Q 004081 542 LGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN----ASVLLLLAEIHKKSGNAVLG 617 (775)
Q Consensus 542 ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~----a~aLl~lA~i~~~~G~~~~A 617 (775)
+..++...+ |+..+..+...++.+.....|++.|+-+..++.++.+..+...+. .-++..++..+...|+...|
T Consensus 148 A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA 225 (518)
T KOG1941|consen 148 ALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDA 225 (518)
T ss_pred HHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccH
Confidence 999988877 888888999999999999999999999999999999887744443 44688999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCC
Q 004081 618 IPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFS 697 (775)
Q Consensus 618 l~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~ 697 (775)
.+...+|..++-++|++...++.++.+|++|...|+. +.|..-++++|-.....||+..+-.++...|||.-....-.
T Consensus 226 ~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~--e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~ 303 (518)
T KOG1941|consen 226 MECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL--ERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQN 303 (518)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH--hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999987711100
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 004081 698 VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLA 758 (775)
Q Consensus 698 ~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~ 758 (775)
.+.--+|+++-.+++++...||+...+..+...+|.+|...|+.++=+.....+-++..+
T Consensus 304 -k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 304 -KICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred -cccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 122346999999999999999999999999999999999999987766554455555443
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.43 E-value=3.1e-09 Score=128.94 Aligned_cols=222 Identities=19% Similarity=0.108 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
+...++..+...|++++|..+++.+.+..+.. ...+. .++ ..+...|++.+|...+.++....+ +.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~-~~~---~~~~~~g~~~~A~~~~~~~~~~~~-----~~--- 736 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA--ALGFE-LEG---DLYLRQKDYPAAIQAYRKALKRAP-----SS--- 736 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC--hHHHH-HHH---HHHHHCCCHHHHHHHHHHHHhhCC-----Cc---
Confidence 34445555555555555555555544433211 11111 111 345566777777777776666422 11
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
.....++.++...|++++|.+.+++++.. ......++..+|.++...|++.+|...+.+++.... ..
T Consensus 737 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~ 803 (899)
T TIGR02917 737 -QNAIKLHRALLASGNTAEAVKTLEAWLKT------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP------DN 803 (899)
T ss_pred -hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------CC
Confidence 34555666677777777777777666642 122345666777777777777777777777665532 12
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~ 717 (775)
..+...++.++...|+. +|+..++.++...-.. ...+..+|.++.. .|++++|+.++++|++...
T Consensus 804 ~~~~~~l~~~~~~~~~~---~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~------~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 804 AVVLNNLAWLYLELKDP---RALEYAEKALKLAPNI------PAILDTLGWLLVE------KGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHHhcCcH---HHHHHHHHHHhhCCCC------cHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhCC
Confidence 34556667777767663 4777777776653221 1234566666666 7777777777777776442
Q ss_pred hccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 718 VLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 718 ~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
. ..+++..++.++...|+.++|.+
T Consensus 869 ~------~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 869 E------AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred C------ChHHHHHHHHHHHHcCCHHHHHH
Confidence 1 34566677777777777777766
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=1.3e-09 Score=134.91 Aligned_cols=296 Identities=14% Similarity=0.034 Sum_probs=211.4
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHH
Q 004081 440 LLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKL 519 (775)
Q Consensus 440 ~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l 519 (775)
...+.+....|...-+.....-.+... ..........+...++..+...|++++|...++++...++..+........+
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 344555555565444433322111111 1112223456778899999999999999999999999888776643211111
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHH
Q 004081 520 QLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS 599 (775)
Q Consensus 520 ~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~ 599 (775)
......++.+|++++|...+.+++.++...+..+......+...++.++...|++++|.+.+++++...+..+ ......
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~ 613 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQ 613 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHH
Confidence 1112467899999999999999999877655323222344566788999999999999999999998877555 344567
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHH
Q 004081 600 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK-ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 678 (775)
Q Consensus 600 aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~-A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l 678 (775)
++..+|.++...|++..|...+.+++.+....+..... ..........+...|.. ++|...+++..+... +....
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~l~~~~~~~~--~~~~~ 689 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK--EAAANWLRQAPKPEF--ANNHF 689 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH--HHHHHHHHhcCCCCC--ccchh
Confidence 88889999999999999999999999987655432211 11111123445557777 889988888765322 22233
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 679 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 679 ~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
....+..+|+++.. .|++++|+..+++|++.++..+.+....+++..+|.++...|+.++|.+
T Consensus 690 ~~~~~~~~a~~~~~------~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 690 LQGQWRNIARAQIL------LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33446678888888 8999999999999999999999999999999999999999999988855
No 14
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.34 E-value=1.4e-10 Score=122.88 Aligned_cols=256 Identities=17% Similarity=0.128 Sum_probs=213.6
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHH-HhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~ 550 (775)
..+...++-.+..++..+|+|.+++..--.....|.+..++...... +.+. +-....-++.+++.+....+.+ .
T Consensus 39 ~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnla-r~~e~l~~f~kt~~y~k~~l~l----p 113 (518)
T KOG1941|consen 39 LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLA-RSNEKLCEFHKTISYCKTCLGL----P 113 (518)
T ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHhcC----C
Confidence 34566777888889999999999988766666667666555422222 2111 2233445677888888777776 2
Q ss_pred CCCh-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 551 GVDM-DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 551 ~~D~-~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
+.++ .....+...++..++.++.|+.+++.++.++..+.+.+|+-.+.++...++.+|.+..++++|+.+..+|+++.+
T Consensus 114 gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 114 GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN 193 (518)
T ss_pred CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence 2233 334567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCc----HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004081 630 LLNLD----LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 705 (775)
Q Consensus 630 ~~g~~----~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~A 705 (775)
..+.. -.++.++.+|+-.+...|.. -.|.+..++++-+.+++||+...++....+|..|+. .|+.+.|
T Consensus 194 s~~l~d~~~kyr~~~lyhmaValR~~G~L--gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~------~gd~e~a 265 (518)
T KOG1941|consen 194 SYGLKDWSLKYRAMSLYHMAVALRLLGRL--GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS------RGDLERA 265 (518)
T ss_pred hcCcCchhHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh------cccHhHH
Confidence 98854 35678899999999999998 999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcC
Q 004081 706 LDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 740 (775)
Q Consensus 706 l~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lG 740 (775)
-.-+++|......++++.++-+++...|.-...+.
T Consensus 266 f~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r 300 (518)
T KOG1941|consen 266 FRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLR 300 (518)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887655443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.29 E-value=1.8e-08 Score=120.68 Aligned_cols=220 Identities=13% Similarity=0.009 Sum_probs=124.2
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHH
Q 004081 486 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 565 (775)
Q Consensus 486 la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a 565 (775)
+..+|++++|...++.+.+..+.... ... ..+. ......|++++|...+++++.+.+ + ...+...++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~-~~~-~~l~---~~l~~~g~~~eA~~~~~~al~~~p-----~---~~~~~~~Lg 253 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQ-ESA-GLAV---DTLCAVGKYQEAIQTGESALARGL-----D---GAALRRSLG 253 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcch-hHH-HHHH---HHHHHCCCHHHHHHHHHHHHhcCC-----C---CHHHHHHHH
Confidence 34466777777766665554431111 111 1111 234566777777777777666422 1 234566677
Q ss_pred HHHHHcCChHH----HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHH
Q 004081 566 RTLLAANQFSE----AAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 641 (775)
Q Consensus 566 ~ll~~~Gd~~e----Al~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 641 (775)
.++...|++++ |+..+++++.. .+....++..+|.++...|++++|+..+.+++.+.-. ...+.
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~ 321 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQF------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVR 321 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHH
Confidence 77777777765 56666666542 1234566677777777777777777777776665321 23445
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccC
Q 004081 642 LTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 721 (775)
Q Consensus 642 ~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~ 721 (775)
..+|.++..+|+. ++|+..+++++..- ++ ...++..+|.++.. .|++++|+..++++++..-..-
T Consensus 322 ~~La~~l~~~G~~--~eA~~~l~~al~~~---P~---~~~~~~~~a~al~~------~G~~deA~~~l~~al~~~P~~~- 386 (656)
T PRK15174 322 AMYARALRQVGQY--TAASDEFVQLAREK---GV---TSKWNRYAAAALLQ------AGKTSEAESVFEHYIQARASHL- 386 (656)
T ss_pred HHHHHHHHHCCCH--HHHHHHHHHHHHhC---cc---chHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhChhhc-
Confidence 5567777777776 77777776665542 11 11233344555555 6777777777777766543322
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHH
Q 004081 722 HELAAEAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 722 ~~~~~evl~~LA~l~~~lGd~~~A 745 (775)
+..-.++...+..++...+.+..+
T Consensus 387 ~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 387 PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred hhhHHHHHHHHHHHHHhcCCccch
Confidence 222335566666666666655443
No 16
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=2.8e-09 Score=121.71 Aligned_cols=237 Identities=16% Similarity=0.054 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhc-Cc-hH---HHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhc
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV-SK-SR---ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 548 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~-~~-~~---~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~ 548 (775)
....++..+|..+..+++|++|..+++.|+.++... |. +. .....++. .+..+|+|++|..+++++..+...
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~---ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV---LYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHhccCChHHHHHHHHHHHHHHHH
Confidence 445556679999999999999999999999987543 32 22 12223543 678999999999999999999887
Q ss_pred CCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-cccch-hHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 549 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQV-ENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 549 ~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-~gd~~-~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
+....+.-....+...+.++..++++++|..++..++.+... .|... ..+....++|.++...|++.+|.+.+..|+.
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 555566667888899999999999999999999999988773 22222 5577899999999999999999999999999
Q ss_pred HHHHhCC--cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHH-HHHHHHHHHHHhhhcCCCCCCCCChH
Q 004081 627 FCQLLNL--DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE-LRARAFIAEAKCLLSDPSFSVSQNPE 703 (775)
Q Consensus 627 la~~~g~--~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~-l~A~a~~~LAr~~lA~~~~~~~g~~~ 703 (775)
+.++.+. ++.....+..||..+.+++.. .+|..+++++..+...+|.-. ..-..|..||.+|.+ .|+++
T Consensus 396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~--~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~------~g~~e 467 (508)
T KOG1840|consen 396 ILRELLGKKDYGVGKPLNQLAEAYEELKKY--EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA------QGNYE 467 (508)
T ss_pred HHHhcccCcChhhhHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH------cccHH
Confidence 9988777 788899999999999999998 999999999988887777655 666789999999999 99999
Q ss_pred HHHHHHHHHHHHHHhccC
Q 004081 704 AVLDPLRQASEELQVLED 721 (775)
Q Consensus 704 ~Al~~L~~Al~~f~~l~~ 721 (775)
.|+.+.+.+...-+....
T Consensus 468 ~a~~~~~~~~~~~~~~~~ 485 (508)
T KOG1840|consen 468 AAEELEEKVLNAREQRLG 485 (508)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999877765544
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.20 E-value=9.9e-09 Score=114.36 Aligned_cols=235 Identities=17% Similarity=0.108 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++..++..+..+|++++|...++.+... +......... .+..+...+...|++++|...+.++... ++.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~-------~~~ 139 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLL-ALQELGQDYLKAGLLDRAEELFLQLVDE-------GDF 139 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHcC-------Ccc
Confidence 467888999999999999999999987753 2222211111 1111124678999999999999998774 111
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...+...++.++...|++++|++.++.++..... .........+..+|.++...|++++|+..+.+++.+...
T Consensus 140 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----- 212 (389)
T PRK11788 140 -AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ----- 212 (389)
T ss_pred -hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-----
Confidence 3567888999999999999999999988763211 111223556788999999999999999999999887532
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
...+...+|.++...|+. ++|.+++++++.. +......++..++.++.. .|++++|+..++++...
T Consensus 213 -~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~------~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 213 -CVRASILLGDLALAQGDY--AAAIEALERVEEQ-----DPEYLSEVLPKLMECYQA------LGDEAEGLEFLRRALEE 278 (389)
T ss_pred -CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHh
Confidence 245677899999999998 9999999998764 222345667888999988 89999999999998875
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
. .+. .+...++.++...|+.++|.+
T Consensus 279 ~---p~~----~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 279 Y---PGA----DLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred C---CCc----hHHHHHHHHHHHhCCHHHHHH
Confidence 3 221 344789999999999999877
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=1e-08 Score=127.15 Aligned_cols=267 Identities=11% Similarity=0.019 Sum_probs=204.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC-C
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT-G 551 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~-~ 551 (775)
+.....+...+..+...|+++.+...++..-... ........ +... ...+..|++.+|..++.++.......+ .
T Consensus 371 ~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~-~~~a---~~~~~~g~~~~a~~~l~~a~~~~~~~~~~ 445 (903)
T PRK04841 371 QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLV-LLQA---WLAQSQHRYSEVNTLLARAEQELKDRNIE 445 (903)
T ss_pred HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchH-HHHH---HHHHHCCCHHHHHHHHHHHHHhccccCcc
Confidence 4455666777888888899888777765431111 11111111 1111 256788999999999998877543322 1
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
.++.....+....+.++...|++++|...+++++.... .++......++..+|.++...|++++|...+.+++.+++..
T Consensus 446 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 446 LDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred cchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 13445667777788999999999999999999987422 23344456678889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH--HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL--ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 709 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~--~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L 709 (775)
|.....+.++..+|.++...|+. ++|...+++++......|.. ...+.++..+|.++.. .|++++|...+
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------~G~~~~A~~~~ 596 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFL--QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE------WARLDEAEQCA 596 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH------hcCHHHHHHHH
Confidence 99999999999999999999998 99999999999998887642 3345556788888888 89999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004081 710 RQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 754 (775)
Q Consensus 710 ~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~q 754 (775)
++|+..++..+. .....++..+|.++...|+.+.|.+.......
T Consensus 597 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 597 RKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999887763 34567888899999999999998775444433
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=2.2e-08 Score=111.54 Aligned_cols=208 Identities=16% Similarity=0.061 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
....++..+|..+...|+|++|...++++.+..+ ........+. ..+...|++++|.+.+..+....+ . .+
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la---~~~~~~g~~~~A~~~~~~~~~~~~--~-~~ 175 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD---FAEGALQQLL---EIYQQEKDWQKAIDVAERLEKLGG--D-SL 175 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc---chHHHHHHHH---HHHHHhchHHHHHHHHHHHHHhcC--C-cc
Confidence 3456789999999999999999999999886532 1111122222 367889999999999999877522 1 11
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
..........++.++...|++++|...+++++... .....++..+|.++...|++++|+..+.+++...
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----- 244 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAAD------PQCVRASILLGDLALAQGDYAAAIEALERVEEQD----- 244 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----
Confidence 12234456788999999999999999999998742 2235678899999999999999999999988763
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 713 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al 713 (775)
+.....+...|+.++...|+. ++|...+++++... .+. ..+..+|+.+.. .|++++|+..+++++
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~--~~A~~~l~~~~~~~---p~~----~~~~~la~~~~~------~g~~~~A~~~l~~~l 309 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDE--AEGLEFLRRALEEY---PGA----DLLLALAQLLEE------QEGPEAAQALLREQL 309 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC---CCc----hHHHHHHHHHHH------hCCHHHHHHHHHHHH
Confidence 223345667799999999998 99999999987652 232 234788899988 999999999999998
Q ss_pred HHH
Q 004081 714 EEL 716 (775)
Q Consensus 714 ~~f 716 (775)
+.+
T Consensus 310 ~~~ 312 (389)
T PRK11788 310 RRH 312 (389)
T ss_pred HhC
Confidence 764
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.13 E-value=9.3e-09 Score=115.33 Aligned_cols=375 Identities=17% Similarity=0.082 Sum_probs=258.5
Q ss_pred HHhCCCchHHHHHHHHHHhh-cCCHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCCcchhhhHHhhHHHHHHhhCChHHH
Q 004081 163 QKLAPELHRVHFLRYLNSLY-HDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQA 241 (775)
Q Consensus 163 ~~~~p~~~~~h~l~yl~~~~-~~dy~~A~d~LhryFD~~~~~~~~dr~~~~~~~~~~~~~qyAlLnlA~lh~~FG~~~~A 241 (775)
++.+|.+.++ |-++-|.|+ .|+.+.|++....-.... ..|-=|.+|||+....=|..++|
T Consensus 109 ~r~~~q~ae~-ysn~aN~~kerg~~~~al~~y~~aiel~------------------p~fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 109 IRKNPQGAEA-YSNLANILKERGQLQDALALYRAAIELK------------------PKFIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhccchHHHH-HHHHHHHHHHhchHHHHHHHHHHHHhcC------------------chhhHHHhhHHHHHHhcCCCccc
Confidence 5566777654 555777776 578888888766644332 14666899999999999999999
Q ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhhhhhccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHhhhhhh
Q 004081 242 LDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLK 321 (775)
Q Consensus 242 ~~al~EAi~~Aqe~~D~~cL~~al~wl~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~q~q~l~~L~~~~~ra~el~l~ 321 (775)
...+.|||++ +-|..|.. +-+.+|++..|+.+ =-+.|.-||.+.
T Consensus 170 ~~~~~~alql---nP~l~ca~---s~lgnLlka~Grl~---------------------------ea~~cYlkAi~~--- 213 (966)
T KOG4626|consen 170 VQCFFEALQL---NPDLYCAR---SDLGNLLKAEGRLE---------------------------EAKACYLKAIET--- 213 (966)
T ss_pred HHHHHHHHhc---Ccchhhhh---cchhHHHHhhcccc---------------------------hhHHHHHHHHhh---
Confidence 9999999975 77888854 45556788777631 112334444431
Q ss_pred hHHHHHHHHHHHhhhhccCCccccCCCcccccccCCchhHHHHHHhhcccccccccccccccCCCcchHHHHhhhccCCC
Q 004081 322 RLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMG 401 (775)
Q Consensus 322 ~L~s~~~l~~ak~~l~~g~~p~~~~g~~~~~~~~~~pa~v~e~l~~~~~l~sd~~~~~~~~~~~g~~~~~~l~~l~~~~~ 401 (775)
+ ||-+.+|.++.-.-..- |-.
T Consensus 214 ------------------q---------------p~fAiawsnLg~~f~~~-------------Gei------------- 234 (966)
T KOG4626|consen 214 ------------------Q---------------PCFAIAWSNLGCVFNAQ-------------GEI------------- 234 (966)
T ss_pred ------------------C---------------CceeeeehhcchHHhhc-------------chH-------------
Confidence 1 22344444442211111 000
Q ss_pred cchhhhcccCCCCccccccccCCCCCchhhHhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHH
Q 004081 402 SLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVK 481 (775)
Q Consensus 402 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~g~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~ 481 (775)
-.++|+...+.- +..-+-.++..-+.++...+...-+-.+-+-.+ .-.. ..+.+++|
T Consensus 235 -------------~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl---~lrp---n~A~a~gN 291 (966)
T KOG4626|consen 235 -------------WLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL---NLRP---NHAVAHGN 291 (966)
T ss_pred -------------HHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH---hcCC---cchhhccc
Confidence 000111100000 001122233333444444444333322111111 1111 34789999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHH
Q 004081 482 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 561 (775)
Q Consensus 482 LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~ 561 (775)
+|..+-.+|..+-|+...++++++-|...+..- .++. ..-..|+.++|++.+.+++.+.+. .+.+.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~---Nlan---ALkd~G~V~ea~~cYnkaL~l~p~--------hadam 357 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYN---NLAN---ALKDKGSVTEAVDCYNKALRLCPN--------HADAM 357 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCCchHHHh---HHHH---HHHhccchHHHHHHHHHHHHhCCc--------cHHHH
Confidence 999999999999999999999998766554321 1111 122459999999999999998552 56689
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 641 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 641 (775)
++++.++..+|.+++|..++..+++.. .+-+.+..++|.|+.+.|+...|+.++.+|+.+.- ..|.++
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P------~fAda~ 425 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVF------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP------TFADAL 425 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhC------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc------hHHHHH
Confidence 999999999999999999999999743 34477899999999999999999999999999864 457899
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 642 LTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 642 ~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
.++|.++-.+|+. +.|+..+++++-.- . .-|.|+..||-.|.. .|..++|+..+++|+.
T Consensus 426 ~NmGnt~ke~g~v--~~A~q~y~rAI~~n----P--t~AeAhsNLasi~kD------sGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 426 SNMGNTYKEMGDV--SAAIQCYTRAIQIN----P--TFAEAHSNLASIYKD------SGNIPEAIQSYRTALK 484 (966)
T ss_pred HhcchHHHHhhhH--HHHHHHHHHHHhcC----c--HHHHHHhhHHHHhhc------cCCcHHHHHHHHHHHc
Confidence 9999999999999 99999999986542 2 346788899999888 9999999999999986
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.12 E-value=1.5e-08 Score=120.56 Aligned_cols=244 Identities=13% Similarity=-0.031 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH
Q 004081 438 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 517 (775)
Q Consensus 438 ~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l 517 (775)
.+...+.++...|...-+...-.-.+. ..+ ....++..+|..+...|+|++|...++.+.+..|... ..+.
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~- 403 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIE----LDP--RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYY- 403 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHH-
Confidence 344555566666665555432221111 111 2356788999999999999999999999988765332 2222
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhH
Q 004081 518 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN 597 (775)
Q Consensus 518 ~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~ 597 (775)
.++ ..++..|++.+|...+++++.+.+ + ...++..++.++...|++++|+..+++++... +..
T Consensus 404 ~lg---~~~~~~g~~~~A~~~~~kal~l~P-----~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~ 466 (615)
T TIGR00990 404 HRA---QLHFIKGEFAQAGKDYQKSIDLDP-----D---FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEA 466 (615)
T ss_pred HHH---HHHHHcCCHHHHHHHHHHHHHcCc-----c---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCC
Confidence 222 367889999999999999998733 2 34568899999999999999999999998632 334
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHhHHHhcCCH
Q 004081 598 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW-LSFGPNHAKMASNLIQQALPLILGHGGL 676 (775)
Q Consensus 598 a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~-l~lG~~~f~~Al~lLe~aLp~il~~G~~ 676 (775)
..++..+|.++...|++++|+..+.+|+.+.............+...+.++ ...|+. ++|..++++++..-- +
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~--~eA~~~~~kAl~l~p---~- 540 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF--IEAENLCEKALIIDP---E- 540 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhcCC---C-
Confidence 678889999999999999999999999998754333222222223333333 336776 999999999987621 1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccC
Q 004081 677 ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 721 (775)
Q Consensus 677 ~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~ 721 (775)
-..++..+|+++.. .|++++|+.++++|.++.+..+.
T Consensus 541 --~~~a~~~la~~~~~------~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 541 --CDIAVATMAQLLLQ------QGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred --cHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHHhccHHH
Confidence 13478899999999 99999999999999999876554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.10 E-value=1.8e-07 Score=114.09 Aligned_cols=222 Identities=14% Similarity=-0.025 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHhhhcCchHH----HHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHH
Q 004081 493 KEAFSALKIAEEKFLSVSKSRI----LLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 567 (775)
Q Consensus 493 ~eAl~~L~~a~~~f~~~~~~~~----~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~l 567 (775)
++|++.++.+.+.++....... +.+ .+. ..+.+|++++|...+++++.... .+|. .+....+.+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~----~Ll~~g~~~eA~~~~~~ll~~~~----~~P~---~a~~~la~~ 281 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLG----ALLARDRYKDVISEYQRLKAEGQ----IIPP---WAQRWVASA 281 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHH----HHHHhhhHHHHHHHHHHhhccCC----CCCH---HHHHHHHHH
Confidence 7788888888877655443321 111 122 23677999999999999887411 1222 244446889
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh--------CC-cHHHH
Q 004081 568 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--------NL-DLLKA 638 (775)
Q Consensus 568 l~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~--------g~-~~~~A 638 (775)
++..|++++|+..+++++..- ..+..........++.++...|++++|+.++.++....... .. .....
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 999999999999999987521 11111123455667777899999999999998877653110 01 11234
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 718 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~ 718 (775)
.+...++.++...|+. ++|++++++++...-.. ..++..+|.++.. .|++++|+..+++|++..
T Consensus 360 ~a~~~~a~~l~~~g~~--~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~------~g~~~~A~~~l~~al~l~-- 423 (765)
T PRK10049 360 QGQSLLSQVAKYSNDL--PQAEMRARELAYNAPGN------QGLRIDYASVLQA------RGWPRAAENELKKAEVLE-- 423 (765)
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh------cCCHHHHHHHHHHHHhhC--
Confidence 5667799999999998 99999999998774222 3588899999999 999999999999999865
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 719 LEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 719 l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
. .-..+++.+|.++..+|+.++|..
T Consensus 424 -P---d~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 424 -P---RNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred -C---CChHHHHHHHHHHHHhCCHHHHHH
Confidence 2 223378889999999999999877
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.06 E-value=1.8e-08 Score=101.65 Aligned_cols=206 Identities=16% Similarity=0.028 Sum_probs=159.6
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
.+....++.++|..+...|+|++|...++++....|... ..+. .++ ..+...|++++|...+.+++.+.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~-~la---~~~~~~~~~~~A~~~~~~al~~~~---- 96 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY--LAYL-ALA---LYYQQLGELEKAEDSFRRALTLNP---- 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHH-HHH---HHHHHcCCHHHHHHHHHHHHhhCC----
Confidence 445678899999999999999999999999987765321 1111 122 367889999999999999988633
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
+ ...+...++.++...|++++|.+.+++++.. .........+..+|.++...|++..|...+.+++.....
T Consensus 97 -~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 167 (234)
T TIGR02521 97 -N---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ- 167 (234)
T ss_pred -C---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 1 2357888999999999999999999999862 222344667888999999999999999999999887432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 711 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~ 711 (775)
...+...++.++...|+. ++|...+++++... .+ ....+..+++++.. .|+.++|..+.+.
T Consensus 168 -----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~---~~---~~~~~~~~~~~~~~------~~~~~~a~~~~~~ 228 (234)
T TIGR02521 168 -----RPESLLELAELYYLRGQY--KDARAYLERYQQTY---NQ---TAESLWLGIRIARA------LGDVAAAQRYGAQ 228 (234)
T ss_pred -----ChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 135667899999999998 99999999998772 11 23445577777777 8888888888776
Q ss_pred HHHH
Q 004081 712 ASEE 715 (775)
Q Consensus 712 Al~~ 715 (775)
....
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 6543
No 24
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.03 E-value=2.4e-08 Score=107.36 Aligned_cols=188 Identities=15% Similarity=0.067 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
+.....-|..+...|++++|.+.+.++.......++....+.++...+.++... ++..|+..+.+|+.+....|.....
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 334444455566789999999999999988888888889999999999998777 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 638 ASATLTLAELWLSF-GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 638 A~al~~La~l~l~l-G~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
+.++..+|.++... |++ ++|++++++++......|........+..+|.++.. .|++.+|++.+++....+
T Consensus 114 A~~~~~lA~~ye~~~~d~--e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~------l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDY--EKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR------LGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHCCTT--H--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHHh
Confidence 99999999999888 887 999999999999999999999999999999999999 999999999999988765
Q ss_pred Hhcc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004081 717 QVLE-DHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 754 (775)
Q Consensus 717 ~~l~-~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~q 754 (775)
.... .....++.+.....+|...||+..|.++...|.+
T Consensus 186 l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4333 3456777777888899999999999886555543
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.01 E-value=1.4e-07 Score=113.18 Aligned_cols=226 Identities=16% Similarity=0.103 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++..++..+...|++++|...++.+....|....... .. ..++..|++.+|...+++++...+ .+
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~---~~----~~l~~~g~~~eA~~~~~~~l~~~~----~~-- 210 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA---TC----LSFLNKSRLPEDHDLARALLPFFA----LE-- 210 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH---HH----HHHHHcCCHHHHHHHHHHHHhcCC----Cc--
Confidence 456778899999999999999999977766654322111 11 136788999999999999877421 11
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHh
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVL----GIPYALASLSFCQLL 631 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~----Al~~l~~AL~la~~~ 631 (775)
........+.++...|++++|++.+++++.. ......++..+|.++...|+++. |+..+.+++.+.-
T Consensus 211 -~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-- 281 (656)
T PRK15174 211 -RQESAGLAVDTLCAVGKYQEAIQTGESALAR------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-- 281 (656)
T ss_pred -chhHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC--
Confidence 1223355678889999999999999999863 23347788899999999999986 7888888887653
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 711 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~ 711 (775)
..+.++..+|.++...|+. ++|+..+++++..- .+ ...++..+|.++.. .|++++|+..+++
T Consensus 282 ----~~~~a~~~lg~~l~~~g~~--~eA~~~l~~al~l~---P~---~~~a~~~La~~l~~------~G~~~eA~~~l~~ 343 (656)
T PRK15174 282 ----DNVRIVTLYADALIRTGQN--EKAIPLLQQSLATH---PD---LPYVRAMYARALRQ------VGQYTAASDEFVQ 343 (656)
T ss_pred ----CCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHH------CCCHHHHHHHHHH
Confidence 2357788899999999998 99999999998753 22 23567789999999 9999999999998
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 712 ASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 712 Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+.+.- |. .......+|.++...|+.++|.+
T Consensus 344 al~~~-----P~-~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 344 LAREK-----GV-TSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHhC-----cc-chHHHHHHHHHHHHCCCHHHHHH
Confidence 88642 11 22355567888999999999876
No 26
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.00 E-value=3.7e-08 Score=105.97 Aligned_cols=207 Identities=14% Similarity=0.064 Sum_probs=159.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.....|+|.+|.+.+.++..+....+ ++...+.++...+.++ ..+++++|++.+++++..+.+.|.....++++..+
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44567899999999999988877666 6666777776666665 55599999999999999999999999999999999
Q ss_pred HHHHHhc-CChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCC-HHHHHHH
Q 004081 605 AEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARA 682 (775)
Q Consensus 605 A~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~-~~l~A~a 682 (775)
|.++... |+++.|+.++.+|+++....+.......++..+|.++..+|+. ++|.++++++....+..+- .+.-...
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y--~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY--EEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHhhcccccchhHHHH
Confidence 9999999 9999999999999999999999999999999999999999987 9999999999887766654 3333345
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHH
Q 004081 683 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 744 (775)
Q Consensus 683 ~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~ 744 (775)
++..+-|++. .|++..|...+++.....-.... ..+++++..+-..+.. ||.+.
T Consensus 199 ~l~a~l~~L~------~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~-~D~e~ 252 (282)
T PF14938_consen 199 FLKAILCHLA------MGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEE-GDVEA 252 (282)
T ss_dssp HHHHHHHHHH------TT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHT-T-CCC
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHh-CCHHH
Confidence 5667789999 89988887777766544433333 5666777777776654 44433
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.97 E-value=3e-06 Score=103.57 Aligned_cols=212 Identities=15% Similarity=0.017 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..+.......+..+|++++|...++.+++.-+..+... ...++ ..++..|++++|..++++++...+ .++.
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a--~~~la---~~yl~~g~~e~A~~~l~~~l~~~p----~~~~ 307 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA--QRWVA---SAYLKLHQPEKAQSILTELFYHPE----TIAD 307 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH--HHHHH---HHHHhcCCcHHHHHHHHHHhhcCC----CCCC
Confidence 34444322344577999999999998876643222221 11122 368899999999999999876421 1211
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc--------ccch-hHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--------NLQV-ENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~--------gd~~-~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
........++..+...|++++|++.++++....... ..+. ....++..+|.++...|++++|+..+.+++.
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123455666777899999999999999887632110 0111 2356788999999999999999999999987
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004081 627 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 706 (775)
Q Consensus 627 la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al 706 (775)
..-.. ..++..+|.++...|.+ ++|++.+++++..- ++ ...+++.+|.+.+. .+++++|.
T Consensus 388 ~~P~n------~~l~~~lA~l~~~~g~~--~~A~~~l~~al~l~---Pd---~~~l~~~~a~~al~------~~~~~~A~ 447 (765)
T PRK10049 388 NAPGN------QGLRIDYASVLQARGWP--RAAENELKKAEVLE---PR---NINLEVEQAWTALD------LQEWRQMD 447 (765)
T ss_pred hCCCC------HHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhC---CC---ChHHHHHHHHHHHH------hCCHHHHH
Confidence 75322 46788899999999998 99999999998764 22 12255666666777 89999999
Q ss_pred HHHHHHHHHH
Q 004081 707 DPLRQASEEL 716 (775)
Q Consensus 707 ~~L~~Al~~f 716 (775)
..++++++.+
T Consensus 448 ~~~~~ll~~~ 457 (765)
T PRK10049 448 VLTDDVVARE 457 (765)
T ss_pred HHHHHHHHhC
Confidence 9999998755
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.89 E-value=2.1e-07 Score=93.80 Aligned_cols=190 Identities=16% Similarity=0.073 Sum_probs=151.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|++++|...+.+++...+ . ...+...++.++...|++++|.+.+++++... .....++..
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p-------~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~ 104 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDP-------D-DYLAYLALALYYQQLGELEKAEDSFRRALTLN------PNNGDVLNN 104 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-------c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHH
Confidence 367889999999999999987522 1 34678889999999999999999999998742 223467888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
+|.++...|++++|+..+.+++.... ......+...+|.++...|+. ++|...+++++...-. ...++
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~------~~~~~ 172 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDF--DKAEKYLTRALQIDPQ------RPESL 172 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCcC------ChHHH
Confidence 99999999999999999999987532 122345567789999999998 9999999999876422 23567
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 751 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~ 751 (775)
..+|.++.. .|++++|+.++++++... . ...+.+..++.++...|+.+.+..+...
T Consensus 173 ~~la~~~~~------~~~~~~A~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 173 LELAELYYL------RGQYKDARAYLERYQQTY---N---QTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhC---C---CCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 889999999 999999999999998862 1 2455666889999999999998875433
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.82 E-value=3.6e-05 Score=93.87 Aligned_cols=194 Identities=13% Similarity=-0.032 Sum_probs=143.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
....+|+++++...++.+..... .....+..-.|..++..++..+|..++.+++..................+
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~-------~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L 373 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGY-------KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDL 373 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCC-------CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHH
Confidence 56779999999999999976321 12457888899999999999999999999876221110111223334567
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH-----------HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQ-----------LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 673 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~-----------~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~ 673 (775)
-..+..+|++++|..++.+...-.- .-+.++. .+...++.++...|+. .+|.++++..+...-
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~~~~~~gdl--~~Ae~~le~l~~~aP-- 447 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQSLVALNDL--PTAQKKLEDLSSTAP-- 447 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC--
Confidence 7788999999999999988766221 2234444 5556677778889998 999999999966553
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 674 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 674 G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
|+.. ....+|.++.. .|.+.+|...++.|.... .....+...+|.++..+|+..+|+.
T Consensus 448 ~n~~----l~~~~A~v~~~------Rg~p~~A~~~~k~a~~l~------P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 448 ANQN----LRIALASIYLA------RDLPRKAEQELKAVESLA------PRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred CCHH----HHHHHHHHHHh------cCCHHHHHHHHHHHhhhC------CccHHHHHHHHHHHHhhhhHHHHHH
Confidence 4433 44578888888 999999999998877652 3346778889999999999999876
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=1.1e-07 Score=108.46 Aligned_cols=231 Identities=13% Similarity=0.042 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCch------HHHHHH----Hhh------------------HHHHHH
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS------RILLLK----LQL------------------LHERSL 527 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~------~~~~l~----l~l------------------~~~~al 527 (775)
..+++.+|..+...++|++|.+.++.+..+-|-.-+. ..|+++ +.. ++...-
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 4889999999999999999999999888765432210 123331 110 012345
Q ss_pred hcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 004081 528 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI 607 (775)
Q Consensus 528 ~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i 607 (775)
.+++++.|...+.++..+ ||. -+.+..++|.=+....+|+.|+..++.++. .....-+++..+|.|
T Consensus 433 LQkdh~~Aik~f~RAiQl-------dp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~------~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQL-------DPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG------VDPRHYNAWYGLGTV 498 (638)
T ss_pred hhhHHHHHHHHHHHhhcc-------CCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc------CCchhhHHHHhhhhh
Confidence 588999999999999887 432 356788888889999999999999999984 455568899999999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcC-CHHHHHHHHHHH
Q 004081 608 HKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG-GLELRARAFIAE 686 (775)
Q Consensus 608 ~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G-~~~l~A~a~~~L 686 (775)
|++.++++.|..++.+|+.+--.. ...++.+|.++.++|.. ++|++++++|+.+=.... .++.+|..
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~--d~AL~~~~~A~~ld~kn~l~~~~~~~i---- 566 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRK--DKALQLYEKAIHLDPKNPLCKYHRASI---- 566 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhh--hHHHHHHHHHHhcCCCCchhHHHHHHH----
Confidence 999999999999999999987433 36678899999999999 999999999976532221 22334443
Q ss_pred HHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 687 AKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 687 Ar~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+.. .+++.+|+.-|++-.++. ..+.-|++++|.+|..+|....|-.
T Consensus 567 ---l~~------~~~~~eal~~LEeLk~~v------P~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 567 ---LFS------LGRYVEALQELEELKELV------PQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred ---HHh------hcchHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHccchHHHH
Confidence 333 577888888888776654 6788999999999999999999876
No 31
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=9.2e-06 Score=89.42 Aligned_cols=285 Identities=13% Similarity=-0.012 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHH
Q 004081 437 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 516 (775)
Q Consensus 437 ~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~ 516 (775)
..+...+.++...|...-+............... + ........+..+...|++++|...++++.+..|... ..+.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a~~ 81 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-T--ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LALK 81 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-C--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHH
Confidence 3455556666666655443211111111112222 2 223344567777889999999999999888766422 1111
Q ss_pred HHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh
Q 004081 517 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE 596 (775)
Q Consensus 517 l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~ 596 (775)
+.+.. +......|+...+.+.+... . + +......+...++.++...|++++|.+.+++++... +.
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~l~~~----~---~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------p~ 146 (355)
T cd05804 82 LHLGA-FGLGDFSGMRDHVARVLPLW----A---P-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN------PD 146 (355)
T ss_pred HhHHH-HHhcccccCchhHHHHHhcc----C---c-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CC
Confidence 10000 00111223333333332221 0 0 111134455556666666666666666666665521 11
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-----
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL----- 671 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il----- 671 (775)
...++..+|.++...|++++|..++.+++..... .+.........++.++...|+. ++|+.++++++..-.
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~--~~A~~~~~~~~~~~~~~~~~ 222 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDY--EAALAIYDTHIAPSAESDPA 222 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCH--HHHHHHHHHHhccccCCChH
Confidence 1445555666666666666666666666555432 2222333444566666666665 666666665531100
Q ss_pred -h-------------cC-----CHH--------------HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 004081 672 -G-------------HG-----GLE--------------LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 718 (775)
Q Consensus 672 -~-------------~G-----~~~--------------l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~ 718 (775)
. .| ..+ .....-...+++++. .|+.++|...++......+.
T Consensus 223 ~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 223 LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG------AGDKDALDKLLAALKGRASS 296 (355)
T ss_pred HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhc
Confidence 0 00 000 000001123344444 78889999999999888887
Q ss_pred ---ccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004081 719 ---LEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 751 (775)
Q Consensus 719 ---l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~ 751 (775)
.+.......+...+|.++...|+.+.|.+....
T Consensus 297 ~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~ 332 (355)
T cd05804 297 ADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP 332 (355)
T ss_pred cCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677777888999999999999999999774433
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.79 E-value=6.7e-07 Score=110.68 Aligned_cols=223 Identities=16% Similarity=0.052 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
...++.++|..+.. |++++|...+.++....|. .. ..+.++ ......|++++|...++++....+ +
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd---~~-~~L~lA---~al~~~Gr~eeAi~~~rka~~~~p-----~- 541 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD---AW-QHRAVA---YQAYQVEDYATALAAWQKISLHDM-----S- 541 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc---hH-HHHHHH---HHHHHCCCHHHHHHHHHHHhccCC-----C-
Confidence 56788999988876 8999999999988877764 11 122222 245689999999999998755311 1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
....+..+.++...|++++|...+++++... .........++......|+++.|+..+.+++.+.-
T Consensus 542 ---~~a~~~la~all~~Gd~~eA~~~l~qAL~l~------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P----- 607 (987)
T PRK09782 542 ---NEDLLAAANTAQAAGNGAARDRWLQQAEQRG------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP----- 607 (987)
T ss_pred ---cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----
Confidence 1235677889999999999999999998631 11233334455555677999999999999987753
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
. +.+...+|.++..+|+. ++|+..+++++..-- + .+.++..+|.++.. .|++++|+..+++|++
T Consensus 608 ~--~~a~~~LA~~l~~lG~~--deA~~~l~~AL~l~P---d---~~~a~~nLG~aL~~------~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 608 S--ANAYVARATIYRQRHNV--PAAVSDLRAALELEP---N---NSNYQAALGYALWD------SGDIAQSREMLERAHK 671 (987)
T ss_pred C--HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 1 45678899999999998 999999999887742 2 33688899988888 8999999999999987
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 715 ELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 715 ~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.. ..-.++++.+|.++...|++++|..
T Consensus 672 l~------P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 672 GL------PDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred hC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 54 2335789999999999999999887
No 33
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=0.00029 Score=78.30 Aligned_cols=210 Identities=18% Similarity=0.150 Sum_probs=162.8
Q ss_pred HhcCCHHHHHHHHHHHhhhhhcCCCCChh------hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc----chh
Q 004081 527 LHRGHLKLAQKVCDELGVMASSVTGVDMD------LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL----QVE 596 (775)
Q Consensus 527 l~~G~~~~A~~~l~~ll~L~~~~~~~D~~------~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd----~~~ 596 (775)
+..|-|++|.++-++++....++.-.|.. .....+-..+-+-+.+||+.+|++-+..+...|.+... +..
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 46788999999999888875555533411 11223335566668899999999999999999987654 345
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH-HHhcCC
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL-ILGHGG 675 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~-il~~G~ 675 (775)
.+..++.+|.--..-|.++.|..++..|..+-... .+.|-+..+||-+|+..|+. +.-.++++.+=|. -....+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~---dl~a~~nlnlAi~YL~~~~~--ed~y~~ld~i~p~nt~s~ss 440 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI---DLQAFCNLNLAISYLRIGDA--EDLYKALDLIGPLNTNSLSS 440 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH---HHHHHHHHhHHHHHHHhccH--HHHHHHHHhcCCCCCCcchH
Confidence 67788888888888999999999999998876543 35778888899999999987 6666666666555 333456
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 676 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 676 ~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
..++|-+++..|--..- .+++.+|..++++-++....-+.-...+--+.+|+-+...+|+..+++.
T Consensus 441 q~l~a~~~~v~glfaf~------qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFK------QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 67788888887755555 7899999999999999997777777888889999999999999888765
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.74 E-value=5.3e-05 Score=89.96 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
.....|||..+-..++++.|...........|.+-+..++..++ +...+...+|..++..++..-. +
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~m------a~~k~~~~ea~~~lk~~l~~d~-----~-- 562 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCM------ARDKNNLYEASLLLKDALNIDS-----S-- 562 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHH------HHhccCcHHHHHHHHHHHhccc-----C--
Confidence 45678999999999999999999999998888766655444433 5678899999999999998632 1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-----cCChhhHHHHHHHHHHHH-H
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-----SGNAVLGIPYALASLSFC-Q 629 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~-----~G~~~~Al~~l~~AL~la-~ 629 (775)
-..++...|.+++....+.-|-+.++..+.... ...-+.+++.+|.++.+ ..++..+..+..+|+.+. .
T Consensus 563 -np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 563 -NPNARSLLGNLHLKKSEWKPAKKKFETILKKTS----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred -CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 346788899999999999999998887775322 22456788888887753 334466788888888885 3
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004081 630 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 709 (775)
Q Consensus 630 ~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L 709 (775)
-...+.--..|-..+|-|+..-|.. .+|+++|.++-+..-.+.+ ++..+|.|++. .|.+..|++.+
T Consensus 638 vL~~dpkN~yAANGIgiVLA~kg~~--~~A~dIFsqVrEa~~~~~d------v~lNlah~~~e------~~qy~~AIqmY 703 (1018)
T KOG2002|consen 638 VLRNDPKNMYAANGIGIVLAEKGRF--SEARDIFSQVREATSDFED------VWLNLAHCYVE------QGQYRLAIQMY 703 (1018)
T ss_pred HHhcCcchhhhccchhhhhhhccCc--hHHHHHHHHHHHHHhhCCc------eeeeHHHHHHH------HHHHHHHHHHH
Confidence 4555555666778899999889987 9999999888766654444 78899999999 99999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 710 RQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 710 ~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
+.++.-|-. .---+|+..||+++...|+..++-+++
T Consensus 704 e~~lkkf~~----~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 704 ENCLKKFYK----KNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHhcc----cCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999998853 334568899999999999988887644
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.73 E-value=1.2e-06 Score=103.10 Aligned_cols=225 Identities=12% Similarity=-0.033 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhh
Q 004081 476 ALAHVKLIQHLAVF---------KGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMA 546 (775)
Q Consensus 476 a~al~~LA~~la~~---------G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~ 546 (775)
..++..+|..+... |++++|...++++.+.-|.... .+. .++ ..+...|++++|...+++++.+.
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~--a~~-~lg---~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ--ALG-LLG---LINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH--HHH-HHH---HHHHHccCHHHHHHHHHHHHHhC
Confidence 55677777665433 4489999999999988764332 222 122 25678999999999999999973
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 547 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 547 ~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
+ + ...+++.++.++...|++++|+..++++++.. +. ...+...++.++...|++++|+..+.+++.
T Consensus 369 P-----~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 369 P-----I---SADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PT-RAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred C-----C---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3 2 34578899999999999999999999998742 22 223334456667778999999999888765
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004081 627 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 706 (775)
Q Consensus 627 la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al 706 (775)
... .....+...+|.++..+|+. ++|+..+++.++.- ++ ...+...++..+.. .| ++|.
T Consensus 435 ~~~-----p~~~~~~~~la~~l~~~G~~--~eA~~~~~~~~~~~---~~---~~~~~~~l~~~~~~------~g--~~a~ 493 (553)
T PRK12370 435 QHL-----QDNPILLSMQVMFLSLKGKH--ELARKLTKEISTQE---IT---GLIAVNLLYAEYCQ------NS--ERAL 493 (553)
T ss_pred hcc-----ccCHHHHHHHHHHHHhCCCH--HHHHHHHHHhhhcc---ch---hHHHHHHHHHHHhc------cH--HHHH
Confidence 531 11134567789999999998 99999998876653 21 22344556666665 55 3677
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 707 DPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 707 ~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
..++..++....-.. -....+.+|...||.+.+..
T Consensus 494 ~~l~~ll~~~~~~~~------~~~~~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 494 PTIREFLESEQRIDN------NPGLLPLVLVAHGEAIAEKM 528 (553)
T ss_pred HHHHHHHHHhhHhhc------CchHHHHHHHHHhhhHHHHH
Confidence 677765554442222 12237888888888776654
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.73 E-value=7.9e-06 Score=92.59 Aligned_cols=289 Identities=13% Similarity=0.031 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHH
Q 004081 439 YLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK 518 (775)
Q Consensus 439 ~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~ 518 (775)
+.+.+..-..-|...-+.-+-. ...+..+... ..+....+..+..+|+|++|.+.++...+..|.... ...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~----~a~~~~p~~~-l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~----~l~ 191 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLE----EAAELAGNDN-ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKE----VLK 191 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH----HHHHhCCcCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHH
Confidence 3444555555566655554221 1122222211 223344577788899999999999988887764432 222
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHH
Q 004081 519 LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 598 (775)
Q Consensus 519 l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a 598 (775)
+. ...++..|+|++|.+++.++.... +. ++............-++..|+.+++.+.+..+..... ...+...
T Consensus 192 ll--~~~~~~~~d~~~a~~~l~~l~k~~--~~--~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p--~~~~~~~ 263 (409)
T TIGR00540 192 LA--EEAYIRSGAWQALDDIIDNMAKAG--LF--DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP--RHRRHNI 263 (409)
T ss_pred HH--HHHHHHHhhHHHHHHHHHHHHHcC--CC--CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC--HHHhCCH
Confidence 11 146789999999999999888741 11 3222212222222222344455555556655554111 0112357
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHH
Q 004081 599 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 678 (775)
Q Consensus 599 ~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l 678 (775)
++...+|..+...|+++.|+..+.+++.......... ...+ ..-..+..++. +++++.++..+... -+++ .
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~---~~~l-~~~~~l~~~~~--~~~~~~~e~~lk~~--p~~~-~ 334 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS---LPLC-LPIPRLKPEDN--EKLEKLIEKQAKNV--DDKP-K 334 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch---hHHH-HHhhhcCCCCh--HHHHHHHHHHHHhC--CCCh-h
Confidence 7888999999999999999999999998764332111 1122 22222334555 88888888877543 1232 2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 004081 679 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLA 758 (775)
Q Consensus 679 ~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~ 758 (775)
+..+..+|+++.. .|++.+|.++|+.|...- .-.++. +...+|.++..+|+.++|.++...-.....+
T Consensus 335 -~~ll~sLg~l~~~------~~~~~~A~~~le~a~a~~-~~p~~~----~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 335 -CCINRALGQLLMK------HGEFIEAADAFKNVAACK-EQLDAN----DLAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred -HHHHHHHHHHHHH------cccHHHHHHHHHHhHHhh-cCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 5788899999999 999999999999543322 122222 3447899999999999998876666667778
Q ss_pred hccCCCC
Q 004081 759 LENENRQ 765 (775)
Q Consensus 759 ~~~~~~~ 765 (775)
++++|++
T Consensus 403 ~~~~~~~ 409 (409)
T TIGR00540 403 IQDNIPE 409 (409)
T ss_pred ccccCCC
Confidence 8887764
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.71 E-value=3.5e-06 Score=85.80 Aligned_cols=217 Identities=19% Similarity=0.110 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhhhcCCCC-----chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHh
Q 004081 454 LTRVNTLIYATCFSDGSS-----LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH 528 (775)
Q Consensus 454 La~l~~~i~~~~~~~~a~-----~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~ 528 (775)
++.+.++....|.++..+ ....+.+...||.-+..+|++..|..-|+.|++.-|..-. .|.+.- ..+..
T Consensus 8 i~lv~~La~~~cvt~~~~~~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~--a~~~~A----~~Yq~ 81 (250)
T COG3063 8 ISLVFSLALGACVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL--AHLVRA----HYYQK 81 (250)
T ss_pred HHHHHHHhhhcccCCCCccccccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--HHHHHH----HHHHH
Confidence 445555555556666554 3456677888999999999999999999999988764333 233322 36788
Q ss_pred cCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 004081 529 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 608 (775)
Q Consensus 529 ~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~ 608 (775)
.|+.+.|.+-+++++++.+. ...++++-|..++.+|+|++|+..+++++. ...-.....++-++|.+.
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~--------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 82 LGENDLADESYRKALSLAPN--------NGDVLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCA 149 (250)
T ss_pred cCChhhHHHHHHHHHhcCCC--------ccchhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHH
Confidence 99999999999999998653 345899999999999999999999999986 233445688999999999
Q ss_pred HhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHH
Q 004081 609 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 688 (775)
Q Consensus 609 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr 688 (775)
.+.|++..|..++.++|.+-.... .++..++..+..-|+. ..|+..++.-... |. ..|..+.+..+
T Consensus 150 l~~gq~~~A~~~l~raL~~dp~~~------~~~l~~a~~~~~~~~y--~~Ar~~~~~~~~~----~~--~~A~sL~L~ir 215 (250)
T COG3063 150 LKAGQFDQAEEYLKRALELDPQFP------PALLELARLHYKAGDY--APARLYLERYQQR----GG--AQAESLLLGIR 215 (250)
T ss_pred hhcCCchhHHHHHHHHHHhCcCCC------hHHHHHHHHHHhcccc--hHHHHHHHHHHhc----cc--ccHHHHHHHHH
Confidence 999999999999999999876543 5667788888888887 8898888765332 22 44444444444
Q ss_pred hhhcCCCCCCCCChHHHHHH
Q 004081 689 CLLSDPSFSVSQNPEAVLDP 708 (775)
Q Consensus 689 ~~lA~~~~~~~g~~~~Al~~ 708 (775)
.--. .|+-..+-.|
T Consensus 216 iak~------~gd~~~a~~Y 229 (250)
T COG3063 216 IAKR------LGDRAAAQRY 229 (250)
T ss_pred HHHH------hccHHHHHHH
Confidence 3333 4555444444
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=3.1e-06 Score=89.64 Aligned_cols=218 Identities=19% Similarity=0.124 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
...+...||.++..+|+.|.|+.+-+.... -|.++..+ ..+.++-+.+-++..|=++.|+.++.++.. .+
T Consensus 68 t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~q-r~lAl~qL~~Dym~aGl~DRAE~~f~~L~d--------e~ 137 (389)
T COG2956 68 TFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQ-RLLALQQLGRDYMAAGLLDRAEDIFNQLVD--------EG 137 (389)
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHhc--------ch
Confidence 346778899999999999999988775553 34444443 122222222678899999999999999865 35
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
+..-.++..+..+|....++..|++..+++...-. .......++++..+|+-+....+.++|...+.+|+....+.
T Consensus 138 efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c--- 213 (389)
T COG2956 138 EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC--- 213 (389)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc---
Confidence 56778899999999999999999999988776322 12344558899999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
++|-..||.+.+..|+. ++|.+.++.++.+ ++.--+.+.-.|-.||.. .|++++.+.+|.++.+
T Consensus 214 ---vRAsi~lG~v~~~~g~y--~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~------lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 214 ---VRASIILGRVELAKGDY--QKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQ------LGKPAEGLNFLRRAME 277 (389)
T ss_pred ---eehhhhhhHHHHhccch--HHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHH
Confidence 46777899999999998 9999999998776 555667888889999999 9999999999999988
Q ss_pred HHHhccCH
Q 004081 715 ELQVLEDH 722 (775)
Q Consensus 715 ~f~~l~~~ 722 (775)
.+......
T Consensus 278 ~~~g~~~~ 285 (389)
T COG2956 278 TNTGADAE 285 (389)
T ss_pred ccCCccHH
Confidence 76555433
No 39
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=8.4e-07 Score=97.70 Aligned_cols=209 Identities=16% Similarity=-0.010 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCch-HHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~-~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
+...++..+|..+...|+++++......+....+...+. ....+. . ..++..|++.+|..++++++...+ .
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-a---~~~~~~g~~~~A~~~~~~~l~~~P----~ 75 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVE-A---LSAWIAGDLPKALALLEQLLDDYP----R 75 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHH-H---HHHHHcCCHHHHHHHHHHHHHHCC----C
Confidence 446788889999999999999877777777666544332 223322 1 267899999999999999988633 2
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
|+ .+... +..+...|++..+.....+++.. ..........++..+|.++...|++.+|...+.+++.+....
T Consensus 76 ~~----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~- 147 (355)
T cd05804 76 DL----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD- 147 (355)
T ss_pred cH----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Confidence 32 23332 55566666666666666555543 234455667788899999999999999999999999986433
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
..+...+|.++...|+. ++|..+++++++.... +.......+..+|.+++. .|++++|+..++++
T Consensus 148 -----~~~~~~la~i~~~~g~~--~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~------~G~~~~A~~~~~~~ 212 (355)
T cd05804 148 -----AWAVHAVAHVLEMQGRF--KEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLE------RGDYEAALAIYDTH 212 (355)
T ss_pred -----cHHHHHHHHHHHHcCCH--HHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHH------CCCHHHHHHHHHHH
Confidence 45677799999999998 9999999999987644 333555678899999999 99999999999998
Q ss_pred H
Q 004081 713 S 713 (775)
Q Consensus 713 l 713 (775)
.
T Consensus 213 ~ 213 (355)
T cd05804 213 I 213 (355)
T ss_pred h
Confidence 5
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.67 E-value=4.8e-06 Score=90.25 Aligned_cols=226 Identities=10% Similarity=-0.052 Sum_probs=150.9
Q ss_pred CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC
Q 004081 471 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 471 ~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~ 550 (775)
+.+..+..+..+|..+...|++++|...++++.+..|... ..+ ..++ ..+...|++++|...+++++.+.+
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~-~~lg---~~~~~~g~~~~A~~~~~~Al~l~P--- 129 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAY-NYLG---IYLTQAGNFDAAYEAFDSVLELDP--- 129 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHH-HHHH---HHHHHCCCHHHHHHHHHHHHHhCC---
Confidence 4456688899999999999999999999999998876432 222 2222 368899999999999999998733
Q ss_pred CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 551 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 551 ~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
. ...++.++|.++...|++++|++.+++++.... .+. .+.+ ...+....+++.+|+..+.+++...
T Consensus 130 ----~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~---~~~~--~~~l~~~~~~~~~A~~~l~~~~~~~-- 195 (296)
T PRK11189 130 ----T-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDP---YRAL--WLYLAESKLDPKQAKENLKQRYEKL-- 195 (296)
T ss_pred ----C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCH---HHHH--HHHHHHccCCHHHHHHHHHHHHhhC--
Confidence 2 245789999999999999999999999987432 122 1221 1223456788999999997765332
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004081 631 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 710 (775)
Q Consensus 631 ~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~ 710 (775)
..+.. ..+.+...+|+...+++...+.+.+....+.+ ..-+.+++.+|+++.. .|++++|+.+++
T Consensus 196 -~~~~~------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~--~~~~ea~~~Lg~~~~~------~g~~~~A~~~~~ 260 (296)
T PRK11189 196 -DKEQW------GWNIVEFYLGKISEETLMERLKAGATDNTELA--ERLCETYFYLAKYYLS------LGDLDEAAALFK 260 (296)
T ss_pred -Ccccc------HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHH------CCCHHHHHHHHH
Confidence 11111 13344455787622223333333322222222 2345689999999999 999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHH
Q 004081 711 QASEELQVLEDHELAAEAFYLIAIVF 736 (775)
Q Consensus 711 ~Al~~f~~l~~~~~~~evl~~LA~l~ 736 (775)
+|++.- ..+.....-++..+..+.
T Consensus 261 ~Al~~~--~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 261 LALANN--VYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHhC--CchHHHHHHHHHHHHHHH
Confidence 998642 223334444444444443
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.67 E-value=1.3e-06 Score=108.07 Aligned_cols=196 Identities=11% Similarity=-0.006 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 558 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~ 558 (775)
...++..+...|++++|...++.+...-+. ...+ ..++ ..++..|++.+|..++++++.+.+ + . .
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~---~~a~-~~la---~all~~Gd~~eA~~~l~qAL~l~P-----~--~-~ 576 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMS---NEDL-LAAA---NTAQAAGNGAARDRWLQQAEQRGL-----G--D-N 576 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCC---cHHH-HHHH---HHHHHCCCHHHHHHHHHHHHhcCC-----c--c-H
Confidence 555677777899999999999986544221 1112 2222 357889999999999999988522 1 1 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
.....++..+...|++++|+..+++++.. ++ . ..++..+|.++.+.|+++.|+..+.+++.+.-. .+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P-~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~ 643 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI-----AP-S-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------NS 643 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CC-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CH
Confidence 33334455555679999999999999872 33 2 678899999999999999999999999988632 24
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
.+...+|.++...|+. ++|+.++++++..-- .-+.++..+|.++.. .|++++|+.++++|++.-
T Consensus 644 ~a~~nLG~aL~~~G~~--eeAi~~l~~AL~l~P------~~~~a~~nLA~al~~------lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 644 NYQAALGYALWDSGDI--AQSREMLERAHKGLP------DDPALIRQLAYVNQR------LDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHhcC
Confidence 6788899999999998 999999999987532 224688999999999 999999999999998755
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=98.66 E-value=7.6e-07 Score=104.76 Aligned_cols=214 Identities=9% Similarity=-0.077 Sum_probs=149.6
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhh-HHH--HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL-LHE--RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 565 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l-~~~--~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a 565 (775)
.+++++|.+.++++.+.-|.............+ ... .....|++.+|...+++++.+.+ . -..++..++
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-------~-~~~a~~~lg 345 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-------N-NPQALGLLG 345 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-------C-CHHHHHHHH
Confidence 456889999999999888754332211111000 000 11245679999999999998732 2 246788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 004081 566 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLA 645 (775)
Q Consensus 566 ~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La 645 (775)
.++...|++++|+..+++++.. .+..+.++..+|.++...|++++|+..+.+|+.+.-.. ..+...++
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~------~~~~~~~~ 413 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLL------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR------AAAGITKL 413 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhhHHHHH
Confidence 9999999999999999999974 24446788999999999999999999999999885321 11223345
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHH
Q 004081 646 ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA 725 (775)
Q Consensus 646 ~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~ 725 (775)
.++...|+. ++|+..+++++.... .....++..+|.++.. .|++++|+..+++..... ...
T Consensus 414 ~~~~~~g~~--eeA~~~~~~~l~~~~-----p~~~~~~~~la~~l~~------~G~~~eA~~~~~~~~~~~------~~~ 474 (553)
T PRK12370 414 WITYYHTGI--DDAIRLGDELRSQHL-----QDNPILLSMQVMFLSL------KGKHELARKLTKEISTQE------ITG 474 (553)
T ss_pred HHHHhccCH--HHHHHHHHHHHHhcc-----ccCHHHHHHHHHHHHh------CCCHHHHHHHHHHhhhcc------chh
Confidence 556678887 999999988764421 1123467888989888 999999999987754332 122
Q ss_pred HHHHHHHHHHHHhcCC
Q 004081 726 AEAFYLIAIVFDKLGR 741 (775)
Q Consensus 726 ~evl~~LA~l~~~lGd 741 (775)
-.....++.+|...|+
T Consensus 475 ~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 475 LIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHHHHHhccHH
Confidence 3344566667777774
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.64 E-value=1.2e-07 Score=101.53 Aligned_cols=224 Identities=18% Similarity=0.085 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
....+|.+....|++++|...++++...-+. .......+. .. +..+++.+|..++.....-. + +
T Consensus 46 ~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l~---~l-~~~~~~~~A~~~~~~~~~~~---~--~---- 109 (280)
T PF13429_consen 46 YWRLLADLAWSLGDYDEAIEAYEKLLASDKA---NPQDYERLI---QL-LQDGDPEEALKLAEKAYERD---G--D---- 109 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc---ccccccccc---cc-cccccccccccccccccccc---c--c----
Confidence 3344555555566666666666655432111 000111111 12 57778888877776654421 1 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
...+...+.++...|+++++.+.++.+.. .........++..+|.++.+.|++.+|+..+.+|+.+.-..
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------ 179 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------ 179 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------
Confidence 23344566677888888888888887663 12233567889999999999999999999999999887421
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~ 717 (775)
..++..++.+++..|+. +++..+++........... .+..+|.++.. .|++.+|+.++++++...
T Consensus 180 ~~~~~~l~~~li~~~~~--~~~~~~l~~~~~~~~~~~~------~~~~la~~~~~------lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 180 PDARNALAWLLIDMGDY--DEAREALKRLLKAAPDDPD------LWDALAAAYLQ------LGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHHHHHCTTCHH--HHHHHHHHHHHHH-HTSCC------HCHHHHHHHHH------HT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHCCCh--HHHHHHHHHHHHHCcCHHH------HHHHHHHHhcc------cccccccccccccccccc-
Confidence 24566677777777876 8888888887776644443 44566777777 899999999999987532
Q ss_pred hccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 718 VLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 718 ~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
. .--.++..+|.++...|+.++|.+
T Consensus 245 --p---~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 245 --P---DDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp --T---T-HHHHHHHHHHHT----------
T ss_pred --c---cccccccccccccccccccccccc
Confidence 2 223456678999999999999876
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.62 E-value=1.2e-05 Score=90.74 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=115.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.+..+|+++.|.+.+.++... +|+.........++++...|++++|++.++++.+ ..+....++..+
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~-------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~------~~P~~~~al~ll 193 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAEL-------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLE------VAPRHPEVLRLA 193 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCCHHHHHHH
Confidence 446667777777666666553 2222223333446666667777777766666654 223345566666
Q ss_pred HHHHHhcCChhhHHHHHHHHHHH-------------------HH---Hh-C-------------CcHHHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSF-------------------CQ---LL-N-------------LDLLKASATLTLAELW 648 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~l-------------------a~---~~-g-------------~~~~~A~al~~La~l~ 648 (775)
+.+|.+.|+.++|+..+.+.... .. .. + .......+...++..+
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l 273 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHH
Confidence 66666666666666333221100 00 00 0 0011234566789999
Q ss_pred HHcCCChHHHHHHHHHHHHhHHH-----------hcCCHHH--------------HHHHHHHHHHhhhcCCCCCCCCChH
Q 004081 649 LSFGPNHAKMASNLIQQALPLIL-----------GHGGLEL--------------RARAFIAEAKCLLSDPSFSVSQNPE 703 (775)
Q Consensus 649 l~lG~~~f~~Al~lLe~aLp~il-----------~~G~~~l--------------~A~a~~~LAr~~lA~~~~~~~g~~~ 703 (775)
...|+. ++|...+++++..-- ..++... -+..++.+|+.++. .+++.
T Consensus 274 ~~~g~~--~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~------~~~~~ 345 (398)
T PRK10747 274 IECDDH--DTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK------HGEWQ 345 (398)
T ss_pred HHCCCH--HHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------CCCHH
Confidence 999998 999999998855210 0011100 02235556666666 88889
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 704 AVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 704 ~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+|.++++++++.- | ...++..++.++...|+.++|.+
T Consensus 346 ~A~~~le~al~~~-----P--~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 346 EASLAFRAALKQR-----P--DAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred HHHHHHHHHHhcC-----C--CHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999988642 2 23446679999999999999876
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.60 E-value=9.5e-07 Score=89.83 Aligned_cols=140 Identities=16% Similarity=0.073 Sum_probs=123.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
|+.-...+.+.++.-++..||+..|..-++++|+. .+....++..+|.+|...|+.+.|...+++|+.+....|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 55667788999999999999999999999999973 234478899999999999999999999999999998776
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
.++++.|.-++..|.+ ++|...|++++.. ......+.++-.+|-|-+. .|....|.++|++|
T Consensus 104 ------dVLNNYG~FLC~qg~~--~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~------~gq~~~A~~~l~ra 165 (250)
T COG3063 104 ------DVLNNYGAFLCAQGRP--EEAMQQFERALAD----PAYGEPSDTLENLGLCALK------AGQFDQAEEYLKRA 165 (250)
T ss_pred ------chhhhhhHHHHhCCCh--HHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhh------cCCchhHHHHHHHH
Confidence 7899999999999987 9999999999755 6777888999999999998 88888888888888
Q ss_pred HHHH
Q 004081 713 SEEL 716 (775)
Q Consensus 713 l~~f 716 (775)
++.=
T Consensus 166 L~~d 169 (250)
T COG3063 166 LELD 169 (250)
T ss_pred HHhC
Confidence 8643
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.59 E-value=9.9e-05 Score=87.74 Aligned_cols=245 Identities=16% Similarity=0.072 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-hcCc--hHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFL-SVSK--SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~-~~~~--~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
.++..|+.++...|+|..+..+.+++...-. .... +-+|+- +-+=.+|+|+.|...|-++..- |
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~g------Rs~Ha~Gd~ekA~~yY~~s~k~-------~ 337 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLG------RSYHAQGDFEKAFKYYMESLKA-------D 337 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHH------HHHHhhccHHHHHHHHHHHHcc-------C
Confidence 7789999999999999999999888875431 0000 112222 3345689999999999998874 3
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHHHH
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG----NAVLGIPYALASLSFCQ 629 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G----~~~~Al~~l~~AL~la~ 629 (775)
+..-...++.+|.+++..|++.+|...++..+. ..+....++..+|.+|...+ ..++|..++.+++...
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK------QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHH------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 333456788999999999999999999999886 34556788899999999886 4466777777766655
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004081 630 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 709 (775)
Q Consensus 630 ~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L 709 (775)
..-+.+.+.|+.+|. .+++ ..++..+..++......+.. ..-..++.+|-.++. .|.+.+|.+++
T Consensus 411 -----~~d~~a~l~laql~e-~~d~--~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~------~g~~~~A~~~f 475 (1018)
T KOG2002|consen 411 -----PVDSEAWLELAQLLE-QTDP--WASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFR------LGNIEKALEHF 475 (1018)
T ss_pred -----cccHHHHHHHHHHHH-hcCh--HHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHH------hcChHHHHHHH
Confidence 234567788999986 6666 77899999999888888877 777889999999998 99999999999
Q ss_pred HHHHHHHHhccCHHH----HHHHHHHHHHHHHhcCCHHHHHH-----------HHHHHHHHH
Q 004081 710 RQASEELQVLEDHEL----AAEAFYLIAIVFDKLGRLAEREE-----------AAALFKEYV 756 (775)
Q Consensus 710 ~~Al~~f~~l~~~~~----~~evl~~LA~l~~~lGd~~~A~~-----------aAa~f~ql~ 756 (775)
.+|+.......++.. .-...|.+|++...+++++.|.+ |-..+.+++
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999998664444433 13358999999999999999976 555566664
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.56 E-value=0.0004 Score=84.92 Aligned_cols=247 Identities=8% Similarity=-0.096 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHH--HHHHHhhHHHHHH-----hcCCHHHHHHHHHHHhhhhhcC
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI--LLLKLQLLHERSL-----HRGHLKLAQKVCDELGVMASSV 549 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~--~~l~l~l~~~~al-----~~G~~~~A~~~l~~ll~L~~~~ 549 (775)
.++..+...+...|-...|++++++-...|......++ -.+...+ ++++ ...++..+...+.+...+....
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v--r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV--RMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH--hhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 55677778888889999998887754444432221111 0111111 1121 3456767777766666654433
Q ss_pred CCCChh---hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 550 TGVDMD---LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 550 ~~~D~~---~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
+ .+|. ....+..=...++..+|++.++++.++.+.. .....-..+.--.|..|+..++|++|++.+.+++.
T Consensus 282 ~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-----~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 282 G-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-----EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred c-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-----cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 3 2332 2234455566677899999999999987764 12233456778889999999999999999988765
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH----HH-------hcCCHHHHHHHHHHHHHhhhcCCC
Q 004081 627 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL----IL-------GHGGLELRARAFIAEAKCLLSDPS 695 (775)
Q Consensus 627 la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~----il-------~~G~~~l~A~a~~~LAr~~lA~~~ 695 (775)
-.-..............|--.++..|+. ++|..+++..... +. .-.+-++ .+..++|.++..
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~--~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~~~~~--- 428 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQL--DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQSLVA--- 428 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccH--HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHHHHHH---
Confidence 4321111111122223456667777776 9999999999762 21 1123333 667778888888
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 696 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 696 ~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.|++.+|...+++.+... ..-..++..+|.++...|.+..|+.
T Consensus 429 ---~gdl~~Ae~~le~l~~~a------P~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 429 ---LNDLPTAQKKLEDLSSTA------PANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred ---cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 899999999999886533 2223345578888888888888766
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.53 E-value=1.1e-05 Score=87.31 Aligned_cols=218 Identities=14% Similarity=-0.049 Sum_probs=143.4
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCchH-HHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 567 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~l 567 (775)
.++.+.+++.+.+++...+...... ......+ ..+...|++.+|...+.+++.+.+ + ...+++.+|.+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g---~~~~~~g~~~~A~~~~~~Al~l~P-----~---~~~a~~~lg~~ 107 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERG---VLYDSLGLRALARNDFSQALALRP-----D---MADAYNYLGIY 107 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHcCC-----C---CHHHHHHHHHH
Confidence 3556777777777775543222221 1122223 257789999999999999998733 2 35789999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 004081 568 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL 647 (775)
Q Consensus 568 l~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l 647 (775)
+...|++++|++.+++++++ .+....++..+|.++...|++++|+..+.+++.+.-. ++. . .....+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~-~----~~~~~l 174 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPY-R----ALWLYL 174 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH-H----HHHHHH
Confidence 99999999999999999873 2334668899999999999999999999999886432 221 1 111122
Q ss_pred HHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhc-cCHHHHH
Q 004081 648 WLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL-EDHELAA 726 (775)
Q Consensus 648 ~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l-~~~~~~~ 726 (775)
....+++ ++|+..+++.++.. ..+.+..+.+++ . .|+...+ ..++.+.+.++.. .-....+
T Consensus 175 ~~~~~~~--~~A~~~l~~~~~~~--~~~~~~~~~~~~-------~------lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 175 AESKLDP--KQAKENLKQRYEKL--DKEQWGWNIVEF-------Y------LGKISEE-TLMERLKAGATDNTELAERLC 236 (296)
T ss_pred HHccCCH--HHHHHHHHHHHhhC--CccccHHHHHHH-------H------ccCCCHH-HHHHHHHhcCCCcHHHHHHHH
Confidence 3345666 99999998876443 112222222222 2 3333332 2444444333211 1123567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 004081 727 EAFYLIAIVFDKLGRLAEREEA 748 (775)
Q Consensus 727 evl~~LA~l~~~lGd~~~A~~a 748 (775)
++++.+|.++...|+.++|..+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHH
Confidence 8999999999999999998773
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=7.4e-06 Score=85.04 Aligned_cols=181 Identities=15% Similarity=0.047 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
.+.....+..+|..+...|+|++|...++++....|...........++ ..+...|++.+|...+++++...+.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la---~~~~~~~~~~~A~~~~~~~l~~~p~--- 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLA---YAYYKSGDYAEAIAAADRFIRLHPN--- 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHCcC---
Confidence 3455678899999999999999999999999988875443222222332 3678899999999999999987552
Q ss_pred CChhhHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHhhcccchhHH------------HHHHHHHHHHHhc
Q 004081 552 VDMDLKTEASLRHARTLLAA--------NQFSEAAAVAHSLFCMCYKFNLQVENA------------SVLLLLAEIHKKS 611 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~--------Gd~~eAl~~l~~aL~~~~~~gd~~~~a------------~aLl~lA~i~~~~ 611 (775)
++. ...+++.++.++... |++++|++.+++++......... ..+ .....+|.++...
T Consensus 103 -~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 103 -HPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA-PDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred -CCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222 345788888888776 89999999999988643321111 111 1234788999999
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 612 GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 612 G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
|++..|+..+.+++.... +....+.++..+|.++..+|+. ++|...++..
T Consensus 180 g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~--~~A~~~~~~l 229 (235)
T TIGR03302 180 GAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLK--DLAQDAAAVL 229 (235)
T ss_pred CChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 999999999998887643 2244578889999999999998 9999987765
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=6.8e-06 Score=98.33 Aligned_cols=177 Identities=15% Similarity=0.055 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004081 530 GHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK 609 (775)
Q Consensus 530 G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~ 609 (775)
|....+.+.+-+++++.+... ...++.++++.+...+|++++|.++++.+++. .+....+...++.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------~Pd~~~a~~~~a~~L~ 131 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRRYP-----HTELFQVLVARALEAAHRSDEGLAVWRGIHQR------FPDSSEAFILMLRGVK 131 (694)
T ss_pred hhhcchHhhHHHHHHHHHhcc-----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------CCCcHHHHHHHHHHHH
Confidence 344444444555555544222 13567777777777777777777777777653 2344666677777777
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh
Q 004081 610 KSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 689 (775)
Q Consensus 610 ~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~ 689 (775)
+.+++++|+..+.+++...-. .+.+++.+|.++.++|++ ++|.++|++++.. + . ..+.++..+|.+
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~--~~A~~~y~~~~~~---~-p--~~~~~~~~~a~~ 197 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWDEIGQS--EQADACFERLSRQ---H-P--EFENGYVGWAQS 197 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcch--HHHHHHHHHHHhc---C-C--CcHHHHHHHHHH
Confidence 777777777777777766532 246667777777777777 7777777777651 1 1 334566677777
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc
Q 004081 690 LLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 739 (775)
Q Consensus 690 ~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~l 739 (775)
+.. .|+.++|...+++|++.+. -|. .+..+-+..+...+..+
T Consensus 198 l~~------~G~~~~A~~~~~~a~~~~~-~~~-~~~~~~~~~~~~~~~~~ 239 (694)
T PRK15179 198 LTR------RGALWRARDVLQAGLDAIG-DGA-RKLTRRLVDLNADLAAL 239 (694)
T ss_pred HHH------cCCHHHHHHHHHHHHHhhC-cch-HHHHHHHHHHHHHHHHH
Confidence 776 7777777777777777663 222 33344445555444443
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=2.9e-05 Score=80.61 Aligned_cols=174 Identities=14% Similarity=0.051 Sum_probs=130.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|...++++....+. + .....+++.++.++...|++++|++.+++++.... +......++..
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~----~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~ 112 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPF----S-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPDADYAYYL 112 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----c-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCchHHHHHH
Confidence 3678899999999999999886441 2 12446789999999999999999999999997443 22233457888
Q ss_pred HHHHHHhc--------CChhhHHHHHHHHHHHHHHhCCcH-----------HHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004081 604 LAEIHKKS--------GNAVLGIPYALASLSFCQLLNLDL-----------LKASATLTLAELWLSFGPNHAKMASNLIQ 664 (775)
Q Consensus 604 lA~i~~~~--------G~~~~Al~~l~~AL~la~~~g~~~-----------~~A~al~~La~l~l~lG~~~f~~Al~lLe 664 (775)
+|.++... |+++.|+..+.+++.......... ........+|.+|...|+. .+|+..++
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~--~~A~~~~~ 190 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY--VAAINRFE 190 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHH
Confidence 88888776 788899999888775532221110 0111234688999999998 99999999
Q ss_pred HHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 665 QALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 665 ~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
+++... ++....+.+++.+|+++.. .|++++|..+++.....|
T Consensus 191 ~al~~~---p~~~~~~~a~~~l~~~~~~------lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 191 TVVENY---PDTPATEEALARLVEAYLK------LGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHC---CCCcchHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhC
Confidence 987664 3334557889999999999 999999999888765543
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=2.7e-05 Score=93.32 Aligned_cols=133 Identities=14% Similarity=0.034 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++.+||.+....|+|++|..+++.+.+..|.....+ +.++ .....++++++|...+++++...+ |
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~---~~~a---~~L~~~~~~eeA~~~~~~~l~~~p-----~-- 152 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAF---ILML---RGVKRQQGIEAGRAEIELYFSGGS-----S-- 152 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHH---HHHH---HHHHHhccHHHHHHHHHHHhhcCC-----C--
Confidence 44555555555555555555555555555554322111 1111 134455555555555555555322 2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
.+.+++.++.++...|+|++|.+.+++++. .......+++.+|.++...|+.++|...+++|++..
T Consensus 153 -~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 153 -SAREILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -CHHHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555553 112334555555555555555555555555555554
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.30 E-value=0.0005 Score=75.11 Aligned_cols=237 Identities=18% Similarity=0.132 Sum_probs=156.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 558 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~ 558 (775)
..+-|..-...|+|..|..++.++.+ .++.. .+++-+..+.+=.+||++.|..++.++..+.. .| ..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae----~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----~~---~l 153 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAE----HGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----DD---TL 153 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhh----cCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----Cc---hH
Confidence 34445555568999999888876443 22222 22221112567788999999999988877522 23 56
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHH---------------
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALA--------------- 623 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~--------------- 623 (775)
.+.+..+++++.+||+..|...+.++++ ......+++....++|.++|++...+..+-+
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~------~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l 227 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLE------MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL 227 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHH------hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH
Confidence 6778889999999999999999988885 5666788888888999999988777655431
Q ss_pred ---HHH----------------HHHHhCCcHHH--HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh----------
Q 004081 624 ---SLS----------------FCQLLNLDLLK--ASATLTLAELWLSFGPNHAKMASNLIQQALPLILG---------- 672 (775)
Q Consensus 624 ---AL~----------------la~~~g~~~~~--A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~---------- 672 (775)
|.. -+.+.--+..+ ......++.=+..+|.. ++|.++++++|+....
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~--~~A~~~i~~~Lk~~~D~~L~~~~~~l 305 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH--DEAQEIIEDALKRQWDPRLCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHhccChhHHHHHhhc
Confidence 111 11111111111 23445567777889998 9999999998664311
Q ss_pred -cCCHH--------------HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 004081 673 -HGGLE--------------LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 737 (775)
Q Consensus 673 -~G~~~--------------l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~ 737 (775)
.++.. .....+++||+.++. .+.+.+|-.+|+.|++.-... ..+..+|.++.
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k------~~~w~kA~~~leaAl~~~~s~-------~~~~~la~~~~ 372 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK------NKLWGKASEALEAALKLRPSA-------SDYAELADALD 372 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH------hhHHHHHHHHHHHHHhcCCCh-------hhHHHHHHHHH
Confidence 01110 012456677777776 777888888888887654433 45556888899
Q ss_pred hcCCHHHHHHHH
Q 004081 738 KLGRLAEREEAA 749 (775)
Q Consensus 738 ~lGd~~~A~~aA 749 (775)
.+|+++.|+++.
T Consensus 373 ~~g~~~~A~~~r 384 (400)
T COG3071 373 QLGEPEEAEQVR 384 (400)
T ss_pred HcCChHHHHHHH
Confidence 999999998844
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.0045 Score=68.96 Aligned_cols=200 Identities=12% Similarity=-0.002 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
.+|-+|..++.+++.+.|...+++|+++=|... ..|.+-- .-++...+-..|.+.++++..+.+ .|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~--~aWTLmG----HEyvEmKNt~AAi~sYRrAvdi~p----~D---- 397 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL--SAWTLMG----HEYVEMKNTHAAIESYRRAVDINP----RD---- 397 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh--HHHHHhh----HHHHHhcccHHHHHHHHHHHhcCc----hh----
Confidence 468889999999999999999999998765322 2444432 467889999999999999988633 24
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
..+++.+|..+--++=+.=|+-.+++++. ..+.-.|++..+|++|.+.++.+.|+..+.+|+..... +
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e 465 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALE------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------E 465 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHh------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------c
Confidence 56899999999999999999999999885 45666889999999999999999999999999988764 4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCC---HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG---LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 713 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~---~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al 713 (775)
..++..||.++..+++. ++|...++..+......|. -..+|+++ ||+=... .+++.+|-.+..++.
T Consensus 466 ~~~l~~LakLye~l~d~--~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k------~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDL--NEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKK------MKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHh------hcchHHHHHHHHHHh
Confidence 58899999999999999 9999999999987644443 34566665 6655555 555555555555444
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.23 E-value=0.00052 Score=77.87 Aligned_cols=240 Identities=14% Similarity=0.017 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
..+.-.|.....+|+++.|...++++.+.+|..... ..+... +..+..|+++.|.+.++.+....+ .+
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~--~~~~~a---~l~l~~~~~~~Al~~l~~l~~~~P----~~--- 186 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL--VEIART---RILLAQNELHAARHGVDKLLEMAP----RH--- 186 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH--HHHHHH---HHHHHCCCHHHHHHHHHHHHHhCC----CC---
Confidence 333444555566677777777777766555432211 111111 346677777777777777766422 12
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
..++...+.+++..||+++|.+.+...++.-. .+.............-....+..+.+...+.++...--+. ...
T Consensus 187 -~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~--~~~ 261 (409)
T TIGR00540 187 -KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH--RRH 261 (409)
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH--HhC
Confidence 24566777777777777777777766664210 1111111111111111123333333344444333221100 001
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
.......++..+...|+. ++|.+.+++++...-.... .+.. .......+. .++...++..++++++
T Consensus 262 ~~~l~~~~a~~l~~~g~~--~~A~~~l~~~l~~~pd~~~---~~~~-~l~~~~~l~------~~~~~~~~~~~e~~lk-- 327 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDH--DSAQEIIFDGLKKLGDDRA---ISLP-LCLPIPRLK------PEDNEKLEKLIEKQAK-- 327 (409)
T ss_pred CHHHHHHHHHHHHHCCCh--HHHHHHHHHHHhhCCCccc---chhH-HHHHhhhcC------CCChHHHHHHHHHHHH--
Confidence 345667788899999998 9999999999876432211 1101 111111222 4566777777777764
Q ss_pred HhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 717 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 717 ~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
...+-.. +..+..+|.++...|+.++|.++.
T Consensus 328 -~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 328 -NVDDKPK-CCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred -hCCCChh-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 3333333 678889999999999999998843
No 56
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=8.1e-05 Score=71.84 Aligned_cols=123 Identities=23% Similarity=0.174 Sum_probs=98.2
Q ss_pred HhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHH
Q 004081 488 VFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 567 (775)
Q Consensus 488 ~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~l 567 (775)
..|++..+...++.....++..+......+.++ ..++..|++++|...+..+..-. .|+.....+.++++.+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA---~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLA---KAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARI 94 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHH
Confidence 478888888888877777765433332233332 46789999999999999998842 3777888999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 004081 568 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 625 (775)
Q Consensus 568 l~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL 625 (775)
++..|+|++|+..++.. .+..+...+...+|.|+.+.|+.+.|...+.+||
T Consensus 95 ~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999652 3455677789999999999999999999998875
No 57
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.9e-05 Score=82.19 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=108.9
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCCchHHHHHHHHHHhhcCCHHHHHHHHHHhhhhhcCCCCC
Q 004081 127 RTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGF 206 (775)
Q Consensus 127 ~s~~~~~~~l~~q~~~l~~~~~~~~~~~l~~~~~~l~~~~p~~~~~h~l~yl~~~~~~dy~~A~d~LhryFD~~~~~~~~ 206 (775)
.+-...+..-..|++-.|+++...|......+.+.....-...-...|-.+++.|-.+||...+|++-| |+..+...
T Consensus 210 ~a~qg~~ql~~v~L~hKqrfp~~~~~a~~wml~d~~~v~~~~~~~~~~h~al~~~~g~d~~~svE~l~R-~A~il~A~-- 286 (482)
T KOG4322|consen 210 RSSQGIEQLTQVQLEHKQRFPCALPLAMKWMLHDLLEVEENNLNTSYYHKALNSWFGGDYQQSVENLCR-FAHILHAD-- 286 (482)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCcHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHhhcchHHhhHHHHHH-HHHHHHHH--
Confidence 344456677788888888888665645444444544444556667899999999999999999999999 99987321
Q ss_pred CCCCCCCCCCCcchhhhHHhhHHHHHHhhCChHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhhh
Q 004081 207 DFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLL 272 (775)
Q Consensus 207 dr~~~~~~~~~~~~~qyAlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe~~D~~cL~~al~wl~~l~ 272 (775)
.+..++|+++|...+|+++|+.++++.+..-.|.-+++.+|..|+++.++|.....
T Consensus 287 ----------~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~ 342 (482)
T KOG4322|consen 287 ----------EQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFK 342 (482)
T ss_pred ----------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999999999999965443
No 58
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.17 E-value=0.0039 Score=75.64 Aligned_cols=234 Identities=13% Similarity=0.031 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
++..+...++..|++++|..++..+.+.-- ...... ...+...+...|++++|.+++++... + |
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~--~~d~~~---~~~Li~~y~k~G~~~~A~~vf~~m~~--~-----d---- 390 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGF--PLDIVA---NTALVDLYSKWGRMEDARNVFDRMPR--K-----N---- 390 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCC--CCCeee---hHHHHHHHHHCCCHHHHHHHHHhCCC--C-----C----
Confidence 445555555555555555555555444311 000000 00001344556666766666665532 1 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
..+++.++..+...|+.++|+++++++.. .|..+. ...+..+-..+.+.|..++|..++..... ..|....
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~----~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~---~~g~~p~- 461 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIA----EGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSE---NHRIKPR- 461 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHH---hcCCCCC-
Confidence 12455666666777777777777766654 232222 22344444555667777777666654432 2222211
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~ 717 (775)
......|..++...|.. ++|.+++++. |. ..+ ..++..|...+.. .|+.+.|...+++.++
T Consensus 462 ~~~y~~li~~l~r~G~~--~eA~~~~~~~-~~---~p~----~~~~~~Ll~a~~~------~g~~~~a~~~~~~l~~--- 522 (697)
T PLN03081 462 AMHYACMIELLGREGLL--DEAYAMIRRA-PF---KPT----VNMWAALLTACRI------HKNLELGRLAAEKLYG--- 522 (697)
T ss_pred ccchHhHHHHHHhcCCH--HHHHHHHHHC-CC---CCC----HHHHHHHHHHHHH------cCCcHHHHHHHHHHhC---
Confidence 12334466677777776 7777776553 21 111 2345555555555 5666666665555432
Q ss_pred hccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 004081 718 VLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLA 758 (775)
Q Consensus 718 ~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~ 758 (775)
++ ......+..++.+|...|+.++|.+.....++.+..
T Consensus 523 -~~--p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 523 -MG--PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred -CC--CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 11 112346788999999999999998876666666543
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=0.00071 Score=72.19 Aligned_cols=223 Identities=17% Similarity=0.095 Sum_probs=168.3
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 568 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll 568 (775)
....+.|...+-+..+.-++ .--..+.++ ...+.+|+.+.|..+...+..- ++...+.+..++..+++=+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~---t~e~~ltLG---nLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE---TFEAHLTLG---NLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred hcCcchHHHHHHHHHhcCch---hhHHHHHHH---HHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHH
Confidence 34566777777665542111 112233443 3678999999999999888762 2223566788999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 004081 569 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 648 (775)
Q Consensus 569 ~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 648 (775)
++.|=++.|.+.+..+.+ .....-.++..+-.||.+..+-++|+..+.+-..+- .-.+....|.-.|.||...
T Consensus 118 m~aGl~DRAE~~f~~L~d------e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVD------EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHhhhhhHHHHHHHHHhc------chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHH
Confidence 999999999999987764 133345578888899999999999999887666554 3345566777778888777
Q ss_pred HHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHH
Q 004081 649 LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEA 728 (775)
Q Consensus 649 l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~ev 728 (775)
..-.+ +++|+.++..++..--. -.+|-..+|++.+. .|+++.|++.++.+++ .++.-..+|
T Consensus 191 ~~~~~--~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~------~g~y~~AV~~~e~v~e-----Qn~~yl~ev 251 (389)
T COG2956 191 LASSD--VDRARELLKKALQADKK------CVRASIILGRVELA------KGDYQKAVEALERVLE-----QNPEYLSEV 251 (389)
T ss_pred hhhhh--HHHHHHHHHHHHhhCcc------ceehhhhhhHHHHh------ccchHHHHHHHHHHHH-----hChHHHHHH
Confidence 55444 49999999999766432 34677899999999 9999999999999876 578889999
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 004081 729 FYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 729 l~~LA~l~~~lGd~~~A~~ 747 (775)
+-.|...|+.+|++++...
T Consensus 252 l~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 9999999999999988654
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.14 E-value=1.8e-05 Score=84.63 Aligned_cols=165 Identities=20% Similarity=0.125 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHH
Q 004081 481 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 560 (775)
Q Consensus 481 ~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a 560 (775)
..+..+...|+++++...++.+...-+...+...|...- ..+...|++++|...+++++.+.+ | -..+
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a----~~~~~~G~~~~A~~~~~~al~~~P-----~---~~~~ 182 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA----EIYEQLGDPDKALRDYRKALELDP-----D---DPDA 182 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH----HHHHHCCHHHHHHHHHHHHHHH-T-----T----HHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCC-----C---CHHH
Confidence 344556678999999999998774221112223333322 367899999999999999999744 2 2346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHH
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA 640 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a 640 (775)
...++.+++..|+++++.+.+........ .....+..+|.++...|+++.|+..+.+++.... .-..+
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~------~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p------~d~~~ 250 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAAP------DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP------DDPLW 250 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH-H------TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST------T-HHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCc------CHHHHHHHHHHHhccccccccccccccccccccc------ccccc
Confidence 77789999999999998888888776432 1223556789999999999999999999876543 12466
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 641 TLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 641 l~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
+..+|.++...|.. ++|.++.++++..++
T Consensus 251 ~~~~a~~l~~~g~~--~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 251 LLAYADALEQAGRK--DEALRLRRQALRLLR 279 (280)
T ss_dssp HHHHHHHHT----------------------
T ss_pred cccccccccccccc--ccccccccccccccC
Confidence 77899999999999 999999999876653
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=3.7e-05 Score=81.58 Aligned_cols=235 Identities=16% Similarity=0.050 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhc--C---chHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhc
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV--S---KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 548 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~--~---~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~ 548 (775)
...+++......+ ..+...|........+.-..- + .-..|-.+-++. ..+++.|-+.+|+..+.+.+.-++
T Consensus 179 ~l~kaLFey~fyh--enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~g-kCylrLgm~r~AekqlqssL~q~~- 254 (478)
T KOG1129|consen 179 TLVKALFEYLFYH--ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMG-KCYLRLGMPRRAEKQLQSSLTQFP- 254 (478)
T ss_pred HHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHH-HHHHHhcChhhhHHHHHHHhhcCC-
Confidence 4556666555444 556666665544444322111 1 112333333322 678999999999999999888543
Q ss_pred CCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 549 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 549 ~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
..+..+.++.++.+..+...|+..+.+.++ ..+....-+...|.||...++.+.|+.++.+++.+-
T Consensus 255 --------~~dTfllLskvY~ridQP~~AL~~~~~gld------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 255 --------HPDTFLLLSKVYQRIDQPERALLVIGEGLD------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred --------chhHHHHHHHHHHHhccHHHHHHHHhhhhh------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 234678889999999999999999988875 455667778899999999999999999998877653
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004081 629 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 708 (775)
Q Consensus 629 ~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~ 708 (775)
. ...++.+ -+|.-|.--|.| +-|+..++++|.+-...+ ..+..+|-|.+. .+.++-++..
T Consensus 321 ~----~nvEaiA--cia~~yfY~~~P--E~AlryYRRiLqmG~~sp------eLf~NigLCC~y------aqQ~D~~L~s 380 (478)
T KOG1129|consen 321 P----INVEAIA--CIAVGYFYDNNP--EMALRYYRRILQMGAQSP------ELFCNIGLCCLY------AQQIDLVLPS 380 (478)
T ss_pred C----ccceeee--eeeeccccCCCh--HHHHHHHHHHHHhcCCCh------HHHhhHHHHHHh------hcchhhhHHH
Confidence 2 2233332 244444446777 899999999887755443 467788888888 7888888888
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 709 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 709 L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
+++|+... ..+...++|.|.++.+....||...|.+|-
T Consensus 381 f~RAlsta---t~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 381 FQRALSTA---TQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHhhc---cCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 88888655 445677888888888888888888877643
No 62
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.11 E-value=0.0014 Score=77.96 Aligned_cols=254 Identities=17% Similarity=0.048 Sum_probs=173.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH--HHh-hHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL--KLQ-LLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l--~l~-l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.--|..++.+++|++|-.++.++....+..+....... ..+ +-...++.+|+.+.|.++.+.++..-+.. -+..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~~ 495 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYRS 495 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cchh
Confidence 34467777899999999999999877665443321111 111 11248999999999999999998854432 3344
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH-
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL- 635 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~- 635 (775)
...+....+.+.+.+|++++|+.+..++.+.++..+..+....+.+..+.|....|+...+.......+.-.+..+...
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 6778888999999999999999999999999999988899999999999999999955555443333332222111111
Q ss_pred --HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc-CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 636 --LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 636 --~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~-G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
....++..+...|..+ +.+..-....+..-... ....+..-++..||++... .|++++|...+++-
T Consensus 576 ~~f~~~~r~~ll~~~~r~-----~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~------~Gdl~~A~~~l~~~ 644 (894)
T COG2909 576 HEFLVRIRAQLLRAWLRL-----DLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL------RGDLDKALAQLDEL 644 (894)
T ss_pred chhHHHHHHHHHHHHHHH-----hhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh------cCCHHHHHHHHHHH
Confidence 1223333334444331 22222222222222222 2233333344799999999 99999999999999
Q ss_pred HHHHHhc-cCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 713 SEELQVL-EDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 713 l~~f~~l-~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
...+..- ......+.+..-+..+-...||.++|..
T Consensus 645 ~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 645 ERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAE 680 (894)
T ss_pred HHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHH
Confidence 9888766 5667777777778888889999998865
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.08 E-value=0.00034 Score=79.13 Aligned_cols=207 Identities=15% Similarity=0.004 Sum_probs=126.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHH
Q 004081 482 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 561 (775)
Q Consensus 482 LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~ 561 (775)
.+.....+|+++.|...++++.+..|..... ..+. .. +.++..|+++.|.+.++++....+ + ...++
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~--~~l~-~a--~l~l~~g~~~~Al~~l~~~~~~~P-----~---~~~al 190 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAELADNDQLP--VEIT-RV--RIQLARNENHAARHGVDKLLEVAP-----R---HPEVL 190 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCcchHH--HHHH-HH--HHHHHCCCHHHHHHHHHHHHhcCC-----C---CHHHH
Confidence 3444456777888888877776554322111 1011 11 456777888888877777766532 1 23566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHh----------------------hc--------------ccchhHHHHHHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCY----------------------KF--------------NLQVENASVLLLLA 605 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~----------------------~~--------------gd~~~~a~aLl~lA 605 (775)
...+.++...||+++|++.+..+...-. .. ...+....+....|
T Consensus 191 ~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A 270 (398)
T PRK10747 191 RLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMA 270 (398)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHH
Confidence 6777777777888887766655542100 00 00011233566677
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHH-----------hCCc--------------HHHHHHHHHHHHHHHHcCCChHHHHH
Q 004081 606 EIHKKSGNAVLGIPYALASLSFCQL-----------LNLD--------------LLKASATLTLAELWLSFGPNHAKMAS 660 (775)
Q Consensus 606 ~i~~~~G~~~~Al~~l~~AL~la~~-----------~g~~--------------~~~A~al~~La~l~l~lG~~~f~~Al 660 (775)
..+...|+++.|...+.+++..... .++. ...+..++.+|.++...|+. .+|+
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~--~~A~ 348 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW--QEAS 348 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH--HHHH
Confidence 8888888888888777766542110 0110 01133456678888878876 9999
Q ss_pred HHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 661 NLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 661 ~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
+.|+.++..- .+ ...+..||+++.+ .|+.++|..++++++...
T Consensus 349 ~~le~al~~~---P~----~~~~~~La~~~~~------~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 349 LAFRAALKQR---PD----AYDYAWLADALDR------LHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhcC---CC----HHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhh
Confidence 9999887652 22 2345678888888 999999999999998643
No 64
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00017 Score=69.51 Aligned_cols=133 Identities=22% Similarity=0.101 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
..+..+......|+...+.+.++.++. ..+.......+.+.+|.++...|++++|...+..++.-. .++.+...
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHH
Confidence 344444444578899888887777665 334455567889999999999999999999999887743 56778889
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 713 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al 713 (775)
+.++||.+++..|.. ++|+..|+.+ .+....+.++.++|.++++ .|+.++|+..+++|+
T Consensus 87 a~l~LA~~~~~~~~~--d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~------~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQGQY--DEALATLQQI-------PDEAFKALAAELLGDIYLA------QGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHhc-------cCcchHHHHHHHHHHHHHH------CCCHHHHHHHHHHhC
Confidence 999999999999998 9999999662 2333577889999999999 999999999999884
No 65
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.06 E-value=3.5e-05 Score=65.86 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh-HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE-NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~-~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
.+.++.++|.++...|+|++|++.+++++..++..|+... .+.++..+|.++...|++++|+.++.+|+++.+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5678899999999999999999999999999888887654 599999999999999999999999999999986
No 66
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=9.6e-05 Score=84.95 Aligned_cols=227 Identities=14% Similarity=0.064 Sum_probs=171.3
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHh
Q 004081 441 LRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ 520 (775)
Q Consensus 441 l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~ 520 (775)
+.+.+|-.--.-.++-+.-.+. . .+... -.+.|.+|..+..|++++.|+..+++|..+-|...- .-.+.
T Consensus 393 yST~LWHLq~~v~Ls~Laq~Li--~-~~~~s----PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY----ayTLl 461 (638)
T KOG1126|consen 393 YSTTLWHLQDEVALSYLAQDLI--D-TDPNS----PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY----AYTLL 461 (638)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH--h-hCCCC----cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch----hhhhc
Confidence 4457776655555665543321 1 12222 256788999999999999999999999876543222 11111
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHH
Q 004081 521 LLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV 600 (775)
Q Consensus 521 l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~a 600 (775)
+.-.+...+|+.|...++.++.+ ||. .-.+++.+|.++++++.++.|.-.++.++.+ -+.....
T Consensus 462 --GhE~~~~ee~d~a~~~fr~Al~~-------~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsvi 525 (638)
T KOG1126|consen 462 --GHESIATEEFDKAMKSFRKALGV-------DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSVI 525 (638)
T ss_pred --CChhhhhHHHHhHHHHHHhhhcC-------Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcC------CccchhH
Confidence 13567788999999999999885 333 4678999999999999999999999999862 2344566
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHH
Q 004081 601 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 680 (775)
Q Consensus 601 Ll~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A 680 (775)
+.-.|.++.+.|+.++|+..+.+|+.+-... ...+..-|.++..+|+. .+|+..||+.-..+. .++
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~--~eal~~LEeLk~~vP------~es 591 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRY--VEALQELEELKELVP------QES 591 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcch--HHHHHHHHHHHHhCc------chH
Confidence 7788999999999999999999998775432 35567788888899998 999999999877763 578
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 681 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 681 ~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
-+++++|++|.. .|....|+..+.=|.+
T Consensus 592 ~v~~llgki~k~------~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 592 SVFALLGKIYKR------LGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHH------HccchHHHHhhHHHhc
Confidence 899999999998 7888778777766554
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.95 E-value=0.0011 Score=83.21 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhc-CchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV-SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~-~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
..++..+...+...|++++|..+++++...-... ++...+..-+ ..+...|++++|.++++.+... .+ .
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI----~ay~k~G~ldeA~elf~~M~e~--gi---~- 611 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM----KACANAGQVDRAKEVYQMIHEY--NI---K- 611 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH----HHHHHCCCHHHHHHHHHHHHHc--CC---C-
Confidence 4677888888888999999999998887542112 2221111111 3567889999999999888763 11 1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
.....+..++..+...|++++|+++++++.. .|... ...++..+...+.+.|+++.|+..+.+... .|..
T Consensus 612 -p~~~tynsLI~ay~k~G~~deAl~lf~eM~~----~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k----~G~~ 681 (1060)
T PLN03218 612 -GTPEVYTIAVNSCSQKGDWDFALSIYDDMKK----KGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARK----QGIK 681 (1060)
T ss_pred -CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCC
Confidence 1235677788888899999999999988765 23222 244666777788889999999888876553 2322
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
.. ..+...|...+...|+. ++|.+++++....-. ..+ ..+|..|...+.. .|++++|++.+++...
T Consensus 682 pd-~~tynsLI~ay~k~G~~--eeA~~lf~eM~~~g~-~Pd----vvtyN~LI~gy~k------~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 682 LG-TVSYSSLMGACSNAKNW--KKALELYEDIKSIKL-RPT----VSTMNALITALCE------GNQLPKALEVLSEMKR 747 (1060)
T ss_pred CC-HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 11 23456677888888887 899998887643210 112 2457777777777 7888888888876542
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 715 ELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 715 ~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
. +.... ..++..+-..+...|+.+.|.+
T Consensus 748 ~----Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 748 L----GLCPN-TITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred c----CCCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 1 11111 2234444456666666666554
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.95 E-value=0.00011 Score=71.16 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=92.6
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChh
Q 004081 536 QKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV 615 (775)
Q Consensus 536 ~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~ 615 (775)
+.++++++++ ||.. ....+..+...|++++|++.+++++. .......++..+|.++...|+++
T Consensus 13 ~~~~~~al~~-------~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~------~~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSV-------DPET----VYASGYASWQEGDYSRAVIDFSWLVM------AQPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHHc-------CHHH----HHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHHhhHH
Confidence 3556777765 5442 45679999999999999999999885 34556889999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 616 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 616 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
.|+..+.+|+.+.- ..+.++..+|.++..+|+. ++|+..++.++...-
T Consensus 76 ~A~~~y~~Al~l~p------~~~~a~~~lg~~l~~~g~~--~eAi~~~~~Al~~~p 123 (144)
T PRK15359 76 TAINFYGHALMLDA------SHPEPVYQTGVCLKMMGEP--GLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC
Confidence 99999999998754 2357889999999999999 999999999987653
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0003 Score=78.32 Aligned_cols=207 Identities=13% Similarity=0.032 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 558 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~ 558 (775)
+..+|..++.+.+..+-...++.|..+-|..++--+.. - ...+..++|++|..-++.+.+| ||+ -+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR--g----Qm~flL~q~e~A~aDF~Kai~L-------~pe-~~ 428 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR--G----QMRFLLQQYEEAIADFQKAISL-------DPE-NA 428 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH--H----HHHHHHHHHHHHHHHHHHHhhc-------Chh-hh
Confidence 44444444444455555555554444444333311111 1 1344566788888888887776 443 35
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
.+...++-++.+.+.+++++..++++...+- .-..+...-|+|++..++++.|...+..|+++....+.-+.-+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP------~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFP------NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 5677788888888888888888888776433 2367889999999999999999999999999987644444444
Q ss_pred HHHHHHHHHHHH-cCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 004081 639 SATLTLAELWLS-FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 639 ~al~~La~l~l~-lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~ 717 (775)
.-+++-|.+.++ -+ .|.+|..+++.++.+ ...-. .|+.+||.+.+. .|..++|+++++++..+.+
T Consensus 503 ~plV~Ka~l~~qwk~--d~~~a~~Ll~KA~e~----Dpkce--~A~~tlaq~~lQ------~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 503 APLVHKALLVLQWKE--DINQAENLLRKAIEL----DPKCE--QAYETLAQFELQ------RGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhhhHhhhchhh--hHHHHHHHHHHHHcc----CchHH--HHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHH
Confidence 444444444433 13 358999999998765 33333 467899999998 9999999999999998886
Q ss_pred hc
Q 004081 718 VL 719 (775)
Q Consensus 718 ~l 719 (775)
..
T Consensus 569 t~ 570 (606)
T KOG0547|consen 569 TE 570 (606)
T ss_pred hH
Confidence 43
No 70
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00068 Score=74.54 Aligned_cols=234 Identities=19% Similarity=0.130 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 478 AHVKLIQHLAVFKG--YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 478 al~~LA~~la~~G~--y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
+..||..+...+|+ +.+|...-+.+..+-+- +......-+ ...+..|+++.|.+.+..++.- | .
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dry---n~~a~~nkg---n~~f~ngd~dka~~~ykeal~n-------d-a 521 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRY---NAAALTNKG---NIAFANGDLDKAAEFYKEALNN-------D-A 521 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhccccc---CHHHhhcCC---ceeeecCcHHHHHHHHHHHHcC-------c-h
Confidence 34555555555554 55666655555432210 011111111 3567889999999999998872 3 2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
.-.+++++.+...-++|+.++|++++-.+-.+ ....+.|+..+|.||.-..++..|+++++++.++.- .+
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i------l~nn~evl~qianiye~led~aqaie~~~q~~slip--~d-- 591 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP--ND-- 591 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--CC--
Confidence 36789999999999999999999998776543 345689999999999999999999999999887753 22
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-------HhHHHhcCCHH------HHH---------------HHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQA-------LPLILGHGGLE------LRA---------------RAFIAEA 687 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~a-------Lp~il~~G~~~------l~A---------------~a~~~LA 687 (775)
..++..||++|-+-|+. .+|.+.+-.. ++.|.=.+..+ .++ .....+|
T Consensus 592 --p~ilskl~dlydqegdk--sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 592 --PAILSKLADLYDQEGDK--SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred --HHHHHHHHHHhhcccch--hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 35566789999888886 5665544332 22222222222 222 2233455
Q ss_pred HhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004081 688 KCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 752 (775)
Q Consensus 688 r~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f 752 (775)
-|.+. .|.+.+|.+.++.-..-| ..--+++..|.++...+|..+. .+++...
T Consensus 668 sc~rr------sgnyqka~d~yk~~hrkf------pedldclkflvri~~dlgl~d~-key~~kl 719 (840)
T KOG2003|consen 668 SCFRR------SGNYQKAFDLYKDIHRKF------PEDLDCLKFLVRIAGDLGLKDA-KEYADKL 719 (840)
T ss_pred HHHHh------cccHHHHHHHHHHHHHhC------ccchHHHHHHHHHhccccchhH-HHHHHHH
Confidence 55555 787777777776654443 2445788889999989997653 3344333
No 71
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.91 E-value=0.0018 Score=81.28 Aligned_cols=238 Identities=13% Similarity=0.031 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++..+...+++.|++++|..+++++...-. ..+...+..-+ ..+...|++++|.+++.++...... ..|+
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv-~PD~vTYnsLI----~a~~k~G~~deA~~lf~eM~~~~~g---i~PD 578 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNV-KPDRVVFNALI----SACGQSGAVDRAFDVLAEMKAETHP---IDPD 578 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHH----HHHHHCCCHHHHHHHHHHHHHhcCC---CCCc
Confidence 46788888999999999999999998875321 11212121112 4567889999999999998652111 1222
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
..+...++..+...|++++|.++++.+.. ........++..+...|.+.|+++.|+..+.+.... |...
T Consensus 579 --~vTynaLI~ay~k~G~ldeA~elf~~M~e-----~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~P 647 (1060)
T PLN03218 579 --HITVGALMKACANAGQVDRAKEVYQMIHE-----YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKP 647 (1060)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Confidence 34567788889999999999999988875 233344567788888899999999999998765532 2221
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
- ..+...|...+...|+. ++|.+++++.... |-. .-..+|..|..++.. .|++++|+..+++..+.
T Consensus 648 D-~~TynsLI~a~~k~G~~--eeA~~l~~eM~k~----G~~-pd~~tynsLI~ay~k------~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 648 D-EVFFSALVDVAGHAGDL--DKAFEILQDARKQ----GIK-LGTVSYSSLMGACSN------AKNWKKALELYEDIKSI 713 (1060)
T ss_pred C-HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHc
Confidence 1 23456677888889998 9999999987532 221 123578888888888 89888888887765431
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 751 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~ 751 (775)
+... -..++..+...|...|+.++|.+....
T Consensus 714 ----g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 714 ----KLRP-TVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred ----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1111 235678888889999999998774433
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00038 Score=74.12 Aligned_cols=225 Identities=14% Similarity=0.004 Sum_probs=174.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHH
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 559 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~ 559 (775)
..+|..+.+.|-+.+|...|+.+++.|+-... . .++...+.+...-..|...+.+-+..++ . ...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dT----f---llLskvY~ridQP~~AL~~~~~gld~fP--~------~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDT----F---LLLSKVYQRIDQPERALLVIGEGLDSFP--F------DVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhH----H---HHHHHHHHHhccHHHHHHHHhhhhhcCC--c------hhh
Confidence 56788888999999999999999998863211 1 1112467777888889988888877544 2 345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
.+...++++-++|++++|++++...+. ....++.+.--.|.-|.-.|+|+-|+.++.+-|.+....+ +
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk------~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp------e 359 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLK------LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP------E 359 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHh------cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh------H
Confidence 677899999999999999999999886 2334455555667778889999999999999998865433 5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhc
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 719 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l 719 (775)
-.+++|.+.+.-+.. +-++..+++++.+.. .....|.+++.||-+... .|+..-|..+++-|+.
T Consensus 360 Lf~NigLCC~yaqQ~--D~~L~sf~RAlstat---~~~~aaDvWYNlg~vaV~------iGD~nlA~rcfrlaL~----- 423 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQI--DLVLPSFQRALSTAT---QPGQAADVWYNLGFVAVT------IGDFNLAKRCFRLALT----- 423 (478)
T ss_pred HHhhHHHHHHhhcch--hhhHHHHHHHHhhcc---CcchhhhhhhccceeEEe------ccchHHHHHHHHHHhc-----
Confidence 556677666656665 889999999988874 344788899999988888 8998888888888764
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004081 720 EDHELAAEAFYLIAIVFDKLGRLAEREEA 748 (775)
Q Consensus 720 ~~~~~~~evl~~LA~l~~~lGd~~~A~~a 748 (775)
.-....+++..||.+-+..|+..+|...
T Consensus 424 -~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 424 -SDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred -cCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 3345678999999999999999998773
No 73
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00048 Score=76.39 Aligned_cols=191 Identities=13% Similarity=0.022 Sum_probs=155.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
-+-.+++...|...+++++.|-+. ...++.+.|.=++.+.+...|++.+++++++|.+ --|++..+
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~--------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWYGL 404 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPK--------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWYGL 404 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcc--------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHhhh
Confidence 456678899999999999998331 5678899999999999999999999999986654 37899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 684 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~ 684 (775)
|+.|.-.+.+.=|+-++++|+.+- -++ .+....||+++..+++. ++|...+.+++.. |+. .+.++.
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~k--PnD----sRlw~aLG~CY~kl~~~--~eAiKCykrai~~----~dt--e~~~l~ 470 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELK--PND----SRLWVALGECYEKLNRL--EEAIKCYKRAILL----GDT--EGSALV 470 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcC--CCc----hHHHHHHHHHHHHhccH--HHHHHHHHHHHhc----ccc--chHHHH
Confidence 999999999999999999998773 223 35677899999999999 9999999998654 554 677899
Q ss_pred HHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 685 AEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL-AAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 685 ~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~-~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
.||+.|-. .++.++|..++++-++.....|-... .-.+..-||.-+...++.++|..++
T Consensus 471 ~LakLye~------l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 471 RLAKLYEE------LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHH------HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 99999998 89999999999999986644333222 3344455999999999988876543
No 74
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.90 E-value=8.4e-05 Score=63.47 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHH-HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l-~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
..+.++..+|.++..+|+. ++|+..+++++......|+... .+.++..+|.|+.. .|++++|+.++++|++
T Consensus 3 ~~a~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~------~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRY--DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR------LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHh
Confidence 3467788999999999998 9999999999999888887764 59999999999999 9999999999999999
Q ss_pred HHHh
Q 004081 715 ELQV 718 (775)
Q Consensus 715 ~f~~ 718 (775)
++++
T Consensus 75 i~~k 78 (78)
T PF13424_consen 75 IFEK 78 (78)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9874
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0013 Score=72.03 Aligned_cols=231 Identities=13% Similarity=0.051 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
...+..+|..++..|++++|.-.++.+.-.-|-. +-.+-......-..|++..-..+...+.... |
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~------i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~------~-- 297 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN------VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV------K-- 297 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh------hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh------h--
Confidence 4556778888899999999998888776443211 1111111123446788888888777777641 1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
..+.=++-.+.++....+|+.|+-+.++++. .......+++++|.+....|+++.|.-.++.|..++-
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap------ 365 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCID------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP------ 365 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhc------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch------
Confidence 1223345556677778888888888888875 2334467888888888899999888888888877762
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHH-HhhhcCCCCC-----------------
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA-KCLLSDPSFS----------------- 697 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LA-r~~lA~~~~~----------------- 697 (775)
..-++...|-+.|++.|.. .+|.-+-+.++...- .-|+++.++| .+++-++..+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~--kEA~~~An~~~~~~~------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRF--KEANALANWTIRLFQ------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred hhHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHhh------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 2235556677777778876 888888777766542 2355666664 4444332110
Q ss_pred ------------CCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 698 ------------VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 698 ------------~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.+|....++..|++++..|.-. .....||.++.+...+.++-+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------NLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-------HHHHHHHHHHHHhhhHHHHHH
Confidence 1677788999999999888543 345567777777777777644
No 76
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0003 Score=79.65 Aligned_cols=175 Identities=17% Similarity=0.071 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
..+.+....|..++..|+-++|.+.+..|-+.|+.-..+- +-++ ..+.+.+.+..|..++.++.++++. |
T Consensus 344 ~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~---LYlg---mey~~t~n~kLAe~Ff~~A~ai~P~----D 413 (611)
T KOG1173|consen 344 TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS---LYLG---MEYMRTNNLKLAEKFFKQALAIAPS----D 413 (611)
T ss_pred cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH---HHHH---HHHHHhccHHHHHHHHHHHHhcCCC----c
Confidence 4567788888999999999999999999999997433221 2222 2577889999999999999998663 6
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh-HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE-NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~-~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
|. ++.-+|.+....+.|.+|..+++.++....+.+.... ..-.+.++|.++.+++.+..|+..+++||.++.+.
T Consensus 414 pl----v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~- 488 (611)
T KOG1173|consen 414 PL----VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD- 488 (611)
T ss_pred ch----hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-
Confidence 54 4666788888899999999999999966655443322 34468999999999999999999999999998643
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+.+...+|-++..+|.. +.|.+.+..+|.+-
T Consensus 489 -----~~~~asig~iy~llgnl--d~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 489 -----ASTHASIGYIYHLLGNL--DKAIDHFHKALALK 519 (611)
T ss_pred -----hhHHHHHHHHHHHhcCh--HHHHHHHHHHHhcC
Confidence 57778899999999999 99999999998764
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.82 E-value=0.0032 Score=67.68 Aligned_cols=246 Identities=13% Similarity=0.040 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC--
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-- 553 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D-- 553 (775)
-.++.+.|..+...|+-..|+.-|.+.+++-|.....+ +.-+ .+.+.+|++.+|..-+++++..-+.-+..-
T Consensus 72 Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR---iQRg---~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 72 YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR---IQRG---VVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH---HHhc---hhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 46788899999999999999999998887655332222 1111 367899999999999999988533211000
Q ss_pred -----hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 554 -----MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 554 -----~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+-.+...+.....-+...||+..|++++..+++ -.+|-+.....+|.+|...|.+-.|+..+..+-.+.
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE------i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE------IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh------cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 011222333445556778999999999999997 457888889999999999999999999999888887
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHH----------------HHHHHHHHHHhhhc
Q 004081 629 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL----------------RARAFIAEAKCLLS 692 (775)
Q Consensus 629 ~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l----------------~A~a~~~LAr~~lA 692 (775)
..+ ......++.++..+|+. +.++..+++||-+--.+-.++- +++---....|.-+
T Consensus 220 ~Dn------Te~~ykis~L~Y~vgd~--~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ 291 (504)
T KOG0624|consen 220 QDN------TEGHYKISQLLYTVGDA--ENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEA 291 (504)
T ss_pred ccc------hHHHHHHHHHHHhhhhH--HHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 654 36667788888888887 8888888888544322221111 00000011111111
Q ss_pred -------CCC---------------CCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 693 -------DPS---------------FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 693 -------~~~---------------~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
++. .+..|.+.+|+....++++ .-..-.+++...|.+|....+++.|..
T Consensus 292 ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~------~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 292 GEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD------IDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh------cCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 111 1124555666666555554 334556788888888888777777654
No 78
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.81 E-value=0.017 Score=69.07 Aligned_cols=202 Identities=17% Similarity=0.156 Sum_probs=162.3
Q ss_pred ChhhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 553 DMDLKTEASLRHARTLL-AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~-~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
.|..++.+.+++|.+++ ...++++|...+++++.+|++.+....+.++...++.++.+.+... |+..+.++++.+...
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 56778999999999997 8899999999999999999987777778889889999999998887 999999999999886
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 711 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~ 711 (775)
+...+.-.-++.-..+.+..++. ..|++.++.........|+......+...-+..++. .+.+..+++.+++
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~--~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~------~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDY--NAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR------RGSPDDVLELLQR 204 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc------CCCchhHHHHHHH
Confidence 66666655555334444445666 899999999999999999999999988888888888 7888899999999
Q ss_pred HHHHHHhc----cCHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHhhhccCC
Q 004081 712 ASEELQVL----EDHELAAEAFYLIAI--VFDKLGRLAEREEAAALFKEYVLALENEN 763 (775)
Q Consensus 712 Al~~f~~l----~~~~~~~evl~~LA~--l~~~lGd~~~A~~aAa~f~ql~~~~~~~~ 763 (775)
+...++.+ .....+-.++..+-. .+-..|++.........+.++.....+.+
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~ 262 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSP 262 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCc
Confidence 98888866 112223334443333 34556788888888888888888887754
No 79
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.00039 Score=68.62 Aligned_cols=139 Identities=12% Similarity=-0.045 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC
Q 004081 574 FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGP 653 (775)
Q Consensus 574 ~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~ 653 (775)
|..+...+...+. .......+.++..+|.++...|+++.|+..+.+|+.+.. ++...+.+...+|.++...|.
T Consensus 15 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 15 FTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred cccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCC
Confidence 4455555544432 123344677888889999999999999999998888742 233445678889999999998
Q ss_pred ChHHHHHHHHHHHHhHHHhcC-CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhc--cCHHHHHH
Q 004081 654 NHAKMASNLIQQALPLILGHG-GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL--EDHELAAE 727 (775)
Q Consensus 654 ~~f~~Al~lLe~aLp~il~~G-~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l--~~~~~~~e 727 (775)
. ++|+..++.++..-...+ .....+.++..+|+.... .|++..|+..+++|+..|++. .+|.....
T Consensus 88 ~--~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~------~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 88 H--TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE------QGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred H--HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH------cccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 8 899999999886533222 233445566666666667 899999999999999999876 55533333
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0003 Score=78.34 Aligned_cols=175 Identities=16% Similarity=0.039 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++.+.|+.....++|++|.+-++.+..+-|+.--.. +.+.. ...++++++++...++....-|+.
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~---iQl~~---a~Yr~~k~~~~m~~Fee~kkkFP~------- 460 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY---IQLCC---ALYRQHKIAESMKTFEEAKKKFPN------- 460 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH---HHHHH---HHHHHHHHHHHHHHHHHHHHhCCC-------
Confidence 35788999999999999999999999987776433333 33222 345667999999999999987774
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHhCCc
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-SGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~-~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
..++...-+.++..+++|+.|.+.+..++++-.+.......+--++.+|.+..+ .++..+|..++.+|+++--+.
T Consensus 461 -~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc--- 536 (606)
T KOG0547|consen 461 -CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC--- 536 (606)
T ss_pred -CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH---
Confidence 347889999999999999999999999998765544344444445555554433 267788888888888764332
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
-.|.-.||.+.+++|.. ++|+++++.++-+.+.
T Consensus 537 ---e~A~~tlaq~~lQ~~~i--~eAielFEksa~lArt 569 (606)
T KOG0547|consen 537 ---EQAYETLAQFELQRGKI--DEAIELFEKSAQLART 569 (606)
T ss_pred ---HHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHh
Confidence 36677899999999999 9999999999877753
No 81
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.79 E-value=0.059 Score=64.51 Aligned_cols=279 Identities=15% Similarity=0.038 Sum_probs=186.9
Q ss_pred CCCchHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 004081 469 GSSLSDAALAHVKLIQHLA-VFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMAS 547 (775)
Q Consensus 469 ~a~~e~~a~al~~LA~~la-~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~ 547 (775)
.-++.-+++++.++|..+. ...++++|..+|+++..+....+....-..+..++...+...+... |...+++....+.
T Consensus 52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 3467888999999999998 5678999999999887766542222211222122224444555545 9999999988766
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 548 SVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 548 ~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
..+ .........+.++.+.+..+|+..|++.++.....+...|++...+-+.+..+.++...+.+..+++.+.++...
T Consensus 131 ~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 131 TYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred ccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 433 223333444445666655699999999999999999888999999999999999999999999999999999888
Q ss_pred HHHh------CCcHHHHHHHHHHHHHH--HHcCCChHHHHHHHHHHH---HhHHHhcC----------------------
Q 004081 628 CQLL------NLDLLKASATLTLAELW--LSFGPNHAKMASNLIQQA---LPLILGHG---------------------- 674 (775)
Q Consensus 628 a~~~------g~~~~~A~al~~La~l~--l~lG~~~f~~Al~lLe~a---Lp~il~~G---------------------- 674 (775)
++.. +.+.+. +...+-++. +..|+. ..+...+.+. +.......
T Consensus 209 ~~~~q~~~~~~~~qL~--~~~lll~l~~~l~~~~~--~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLK--ALFLLLDLCCSLQQGDV--KNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HhhcccCCCCCcHHHH--HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 8865 223333 333344444 445554 4555554444 33332211
Q ss_pred -----------CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhcc---------------C-----HH
Q 004081 675 -----------GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE---------------D-----HE 723 (775)
Q Consensus 675 -----------~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~---------------~-----~~ 723 (775)
.-...+-+|+.-|-+.+. .+...+|..++++|+...++.. . ..
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~------~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~ 358 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLY------KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRY 358 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhh------ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHH
Confidence 112334445544444444 4444588899999988887766 1 12
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhc
Q 004081 724 LAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALE 760 (775)
Q Consensus 724 ~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~ 760 (775)
..+-++..++......|+...+.......++...+..
T Consensus 359 l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 395 (608)
T PF10345_consen 359 LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSP 395 (608)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCc
Confidence 3566777888889999999998886665555554443
No 82
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00041 Score=76.24 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=122.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC-CHHHHHHHHHHHhhhhhcCCCCChhhHH
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVTGVDMDLKT 558 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~L~~~~~~~D~~~~~ 558 (775)
.+-+.-+.++|+|+.|.++|+-....-.........- +.. .+.+.-| ++..|.++.+.++.+ |+. -+
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~n--l~~--l~flqggk~~~~aqqyad~aln~-------dry-n~ 490 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANN--LCA--LRFLQGGKDFADAQQYADIALNI-------DRY-NA 490 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhh--hHH--HHHHhcccchhHHHHHHHHHhcc-------ccc-CH
Confidence 4556677899999999999874332211111111112 221 2444433 789999999988875 433 35
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
.++.+++.+-...||++.|.+.+.+++. ....-..++.++|..+...|+.++|+..+.+--.+-. -.+
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~ 558 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNA 558 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhH
Confidence 6788999999999999999999999985 2233367899999999999999999999987666554 347
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
++++.++.+|..+.++ .+|++++-++-.+|
T Consensus 559 evl~qianiye~led~--aqaie~~~q~~sli 588 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDP--AQAIELLMQANSLI 588 (840)
T ss_pred HHHHHHHHHHHHhhCH--HHHHHHHHHhcccC
Confidence 8999999999999999 99999999985554
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.77 E-value=0.00042 Score=66.99 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=75.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.....|++++|...+.+++.+.+ . ...++..+|.++...|++++|+..+++++.. ......++..+
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a~~~l 98 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQP-------W-SWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEPVYQT 98 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-------C-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHHHHHH
Confidence 56788999999999999887622 2 4578889999999999999999999998862 34557888899
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
|.++...|++++|+..+.+|+.+.-
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988764
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.76 E-value=0.0041 Score=72.95 Aligned_cols=245 Identities=20% Similarity=0.100 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
.++.+++..++.++....|.+..+++++.-+... ...|++ .+ ..-..+++.+|+.+.+.++.=+. |
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-~~~whLLAL-----vlSa~kr~~~Al~vvd~al~E~~-----~-- 545 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDS-AKAWHLLAL-----VLSAQKRLKEALDVVDAALEEFG-----D-- 545 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-HHHHHHHHH-----HHhhhhhhHHHHHHHHHHHHHhh-----h--
Confidence 6778888888889999999888888887644222 223443 33 44567888889888888877433 2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc---ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF---NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~---gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
-......++.+-...||-.+|+..+...+...+.. .....+...+..++.+++..+++..|.....++..+...-+
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 12234445556666888888888888888776631 11223566788889999999999999888887777765322
Q ss_pred CcH--------------------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 633 LDL--------------------LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 633 ~~~--------------------~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
-.. ..-......+.+|...|.. ++|...+.++--+. ..-+..|+..|+++..
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~--~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND--DEARSCLLEASKID------PLSASVYYLRGLLLEV 696 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHhcc------hhhHHHHHHhhHHHHH
Confidence 211 1223344678888888888 88887777764333 3445555666655555
Q ss_pred CCCCCCCCChHHHHHHHHHHHH--------------HHHhccCHH----------------HHHHHHHHHHHHHHhcCCH
Q 004081 693 DPSFSVSQNPEAVLDPLRQASE--------------ELQVLEDHE----------------LAAEAFYLIAIVFDKLGRL 742 (775)
Q Consensus 693 ~~~~~~~g~~~~Al~~L~~Al~--------------~f~~l~~~~----------------~~~evl~~LA~l~~~lGd~ 742 (775)
.|...+|...+..|+. ++.+.|.+. .-.++.+.+|.++..+||.
T Consensus 697 ------~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 697 ------KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred ------HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 4444444444444432 223333222 2346789999999999999
Q ss_pred HHHHHHH
Q 004081 743 AEREEAA 749 (775)
Q Consensus 743 ~~A~~aA 749 (775)
..|-+|-
T Consensus 771 ~~Aaecf 777 (799)
T KOG4162|consen 771 KQAAECF 777 (799)
T ss_pred HHHHHHH
Confidence 9887755
No 85
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.012 Score=65.86 Aligned_cols=247 Identities=16% Similarity=0.067 Sum_probs=177.3
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCc----hH-HHHHHHhhH-H--HHHHhcCCHHHHHHHHHHHhhhhhcCCC--CChhhHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSK----SR-ILLLKLQLL-H--ERSLHRGHLKLAQKVCDELGVMASSVTG--VDMDLKT 558 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~----~~-~~~l~l~l~-~--~~al~~G~~~~A~~~l~~ll~L~~~~~~--~D~~~~~ 558 (775)
.|-|++|..+-+++...-.+... .+ +.+++..++ + -.-+-+|++.+|.+-+......+.+.+. .-+.-.+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 45677777776666655443332 22 222332211 1 2456799999999999999887665442 1233355
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-----HhCC
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ-----LLNL 633 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~-----~~g~ 633 (775)
.....+|.+....|.|+.|...+..+...-.+ ....+-+-.++|.+|++.|+-+.--. +++.-. ...-
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed~y~----~ld~i~p~nt~s~ss 440 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAEDLYK----ALDLIGPLNTNSLSS 440 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHHHHH----HHHhcCCCCCCcchH
Confidence 66778888888899999999888888765443 34467788899999999877543222 222210 1111
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 713 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al 713 (775)
...++.+...-|-.....++. .+|...+++.|...-.-+-..+.|+.+.+|+.+... .|+..++...++-|.
T Consensus 441 q~l~a~~~~v~glfaf~qn~l--nEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~ls------lgn~~es~nmvrpam 512 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDL--NEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLS------LGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH------hcchHHHHhccchHH
Confidence 234555555555555556666 999999999999997778888999999999999998 899999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 004081 714 EELQVLEDHELAAEAFYLIAIVFDKLGR--LAEREEAAA 750 (775)
Q Consensus 714 ~~f~~l~~~~~~~evl~~LA~l~~~lGd--~~~A~~aAa 750 (775)
.+.+++.|..-+-=....+-.+|...|+ ....+++..
T Consensus 513 qlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 513 QLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 9999999999999999999999999999 555555443
No 86
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0014 Score=71.87 Aligned_cols=205 Identities=16% Similarity=0.040 Sum_probs=140.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCC----hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVD----MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV 600 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D----~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~a 600 (775)
...+.++.+.|..++.+.+.+.+.....- ..-..+.+-..+.-....|+|..|.+.+.++|.+-. ......+..
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP--~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP--SNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc--cccchhHHH
Confidence 45677888888889988888743221000 011346667788888999999999999999997322 234456888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHH
Q 004081 601 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 680 (775)
Q Consensus 601 Ll~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A 680 (775)
+.++|.+..+.|+..+|+.....|+.|-.. ...+++.-|.+++.++.. ++|++-++.++..-.....+..-.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~s------yikall~ra~c~l~le~~--e~AV~d~~~a~q~~~s~e~r~~l~ 361 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSS------YIKALLRRANCHLALEKW--EEAVEDYEKAMQLEKDCEIRRTLR 361 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHH------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccccchHHHHH
Confidence 999999999999999999999999888543 356677788999999998 999999999988765544444333
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004081 681 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE-----DHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 755 (775)
Q Consensus 681 ~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~-----~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql 755 (775)
.+-..|=+..+. ++|.-+| .....+-++.++|.+||..-..-.+.++-+.|++.
T Consensus 362 ~A~~aLkkSkRk---------------------d~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkev 420 (486)
T KOG0550|consen 362 EAQLALKKSKRK---------------------DWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEV 420 (486)
T ss_pred HHHHHHHHhhhh---------------------hHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHH
Confidence 443333221111 2232222 23345667777787777665555556666677777
Q ss_pred Hhhhc
Q 004081 756 VLALE 760 (775)
Q Consensus 756 ~~~~~ 760 (775)
+.++.
T Consensus 421 geAy~ 425 (486)
T KOG0550|consen 421 GEAYT 425 (486)
T ss_pred HHHHH
Confidence 76654
No 87
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0059 Score=69.46 Aligned_cols=240 Identities=14% Similarity=0.034 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
...+...+..+...++|.+-+.+.+...+.+|-+..--...|. .....|+..+=-.+-.++....+ +
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia------~l~el~~~n~Lf~lsh~LV~~yP-----~-- 310 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA------CLYELGKSNKLFLLSHKLVDLYP-----S-- 310 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH------HHHHhcccchHHHHHHHHHHhCC-----C--
Confidence 3455666777778899999999999888888765542211111 12233443333333334433322 1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
.+..++..|-++...|.+++|.+.+.++-.+ ...-..+++..|..+...|+.+.|+..+..|-.+-.+.+.|.
T Consensus 311 -~a~sW~aVg~YYl~i~k~seARry~SKat~l------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 311 -KALSWFAVGCYYLMIGKYSEARRYFSKATTL------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred -CCcchhhHHHHHHHhcCcHHHHHHHHHHhhc------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence 3455666777777777777777777665432 222244556666777777777777777766666666666654
Q ss_pred HHHHHHHH------HHHHH---------------HHcCC-----ChHHHHHHHHHHHHhHHHhcCCHHH-HHHHHHHHHH
Q 004081 636 LKASATLT------LAELW---------------LSFGP-----NHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAK 688 (775)
Q Consensus 636 ~~A~al~~------La~l~---------------l~lG~-----~~f~~Al~lLe~aLp~il~~G~~~l-~A~a~~~LAr 688 (775)
+-.-.... ||+-+ ..+|- .+|.+|..+|+.++..+.+.+.--. -.-.+..||-
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 43332222 12111 11111 1668999999999866665544322 2234778888
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 689 CLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 689 ~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+++. .+.+++|+.++++|+..- ..-.+++..+|-+|+.+|.++.|.+
T Consensus 464 ~~Rk------l~~~~eAI~~~q~aL~l~------~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 464 AYRK------LNKYEEAIDYYQKALLLS------PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHH------HhhHHHHHHHHHHHHHcC------CCchhHHHHHHHHHHHhcChHHHHH
Confidence 8888 899999999999998654 2445788899999999999999966
No 88
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.007 Score=62.18 Aligned_cols=178 Identities=12% Similarity=0.055 Sum_probs=130.4
Q ss_pred cCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHH
Q 004081 490 KGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 569 (775)
Q Consensus 490 G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~ 569 (775)
+.|++|.+++.++...|. ...+|..|-..+.++..+--..+..+ -+...+-.+.-..
T Consensus 28 ~k~eeAadl~~~Aan~yk--------------------laK~w~~AG~aflkaA~~h~k~~skh---Daat~YveA~~cy 84 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYK--------------------LAKNWSAAGDAFLKAADLHLKAGSKH---DAATTYVEAANCY 84 (288)
T ss_pred cchHHHHHHHHHHHHHHH--------------------HHHhHHHHHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHh
Confidence 468899888888776663 23455666666666666544444333 2334455555567
Q ss_pred HcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 004081 570 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 648 (775)
Q Consensus 570 ~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 648 (775)
+.++..+|+..++.+++++.+.|.-...++-++.+|++|..- .+++.|+.++.+|-+....-.-....-.+++-.|..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999998888899999999999655 8999999999999988865555556667777777777
Q ss_pred HHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH-HHHHHhhhc
Q 004081 649 LSFGPNHAKMASNLIQQALPLILGHGGLELRARAF-IAEAKCLLS 692 (775)
Q Consensus 649 l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~-~~LAr~~lA 692 (775)
..+|.. .+|.+.++++...-+.+.-.-=-+.-| +.-|-||+.
T Consensus 165 a~leqY--~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 165 AQLEQY--SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHH--HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 778887 999999999977766554333333333 445588888
No 89
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.64 E-value=0.013 Score=70.02 Aligned_cols=93 Identities=12% Similarity=0.042 Sum_probs=68.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHH-
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLL- 602 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl- 602 (775)
+....+|.+..|.-++.+++.+-+ . ..+....++.++...|++..|++...+++..+. .....++..++
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p-------~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~ 284 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANP-------S-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIR 284 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC-------c-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHH
Confidence 467788999999999999988622 2 367788999999999999999999999887554 11122233333
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHH
Q 004081 603 LLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 603 ~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
..++.+...+..++|+..+..++.
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 337777777777888877777766
No 90
>PLN03077 Protein ECB2; Provisional
Probab=97.64 E-value=0.057 Score=67.18 Aligned_cols=181 Identities=14% Similarity=0.091 Sum_probs=95.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHH---
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV--- 600 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~a--- 600 (775)
..+...|++++|.+++++... .|. ..+..++..+...|++++|++++++++. +..+.....
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~-------~d~----vs~~~mi~~~~~~g~~~eA~~lf~~m~~-----~~~pd~~t~~~l 495 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE-------KDV----ISWTSIIAGLRLNNRCFEALIFFRQMLL-----TLKPNSVTLIAA 495 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC-------CCe----eeHHHHHHHHHHCCCHHHHHHHHHHHHh-----CCCCCHhHHHHH
Confidence 456667777777777776533 121 2455666777778888888888877763 111111110
Q ss_pred -------------------------------HHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 004081 601 -------------------------------LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 649 (775)
Q Consensus 601 -------------------------------Ll~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l 649 (775)
...+-..|.++|+.+.|+..+.+. .+ -..+...|...+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--------~~--d~~s~n~lI~~~~ 565 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--------EK--DVVSWNILLTGYV 565 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--------CC--ChhhHHHHHHHHH
Confidence 112235566677777776665442 01 1234455666777
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 004081 650 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAF 729 (775)
Q Consensus 650 ~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl 729 (775)
..|.. ++|++++++.... |-.... .++..+-.++.. .|..++|..++++..+.+.-..+ .+++
T Consensus 566 ~~G~~--~~A~~lf~~M~~~----g~~Pd~-~T~~~ll~a~~~------~g~v~ea~~~f~~M~~~~gi~P~----~~~y 628 (857)
T PLN03077 566 AHGKG--SMAVELFNRMVES----GVNPDE-VTFISLLCACSR------SGMVTQGLEYFHSMEEKYSITPN----LKHY 628 (857)
T ss_pred HcCCH--HHHHHHHHHHHHc----CCCCCc-ccHHHHHHHHhh------cChHHHHHHHHHHHHHHhCCCCc----hHHH
Confidence 78887 8888888875421 211111 223322233333 45555555555554433311111 1345
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 004081 730 YLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 730 ~~LA~l~~~lGd~~~A~~ 747 (775)
.-+..++...|+.++|.+
T Consensus 629 ~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHHHHHHHhCCCHHHHHH
Confidence 555555566666555544
No 91
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.63 E-value=0.0017 Score=60.85 Aligned_cols=113 Identities=21% Similarity=0.132 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd-~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
++.+..+..+-..|+.++|+..+++++. .|. .....++++.+|..+...|++++|+..+.+++. +..++.+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALA----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcccc
Confidence 4678899999999999999999999987 232 344578999999999999999999999988864 33444455
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
..+...++.++..+|++ ++|++.+-.++..-.. .+.+|...
T Consensus 75 ~~l~~f~Al~L~~~gr~--~eAl~~~l~~la~~~~---~y~ra~~~ 115 (120)
T PF12688_consen 75 AALRVFLALALYNLGRP--KEALEWLLEALAETLP---RYRRAIRF 115 (120)
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 56667788899999999 9999998777654332 66666543
No 92
>PLN03077 Protein ECB2; Provisional
Probab=97.61 E-value=0.23 Score=61.93 Aligned_cols=237 Identities=14% Similarity=0.097 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH--HHHHH-----------------------------HhhHHHH
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR--ILLLK-----------------------------LQLLHER 525 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~--~~~l~-----------------------------l~l~~~~ 525 (775)
.++..+...+...|++++|+.+++++..... ++.. ...+. ...+...
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~--pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLK--PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC--CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 3556666777777888888888877764321 1110 00000 0001134
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
+...|++.+|...+... . .| ..++..++..+...|+.++|+++++++.. .|..+.... ...+-
T Consensus 534 y~k~G~~~~A~~~f~~~-~-------~d----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~----~g~~Pd~~T-~~~ll 596 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH-E-------KD----VVSWNILLTGYVAHGKGSMAVELFNRMVE----SGVNPDEVT-FISLL 596 (857)
T ss_pred HHHcCCHHHHHHHHHhc-C-------CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCccc-HHHHH
Confidence 56678888888777664 1 13 24577778888888999999988888764 243333333 22233
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHH
Q 004081 606 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 685 (775)
Q Consensus 606 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~ 685 (775)
..+.+.|..++|+.++.+.. ...|..... .....|..++...|+. ++|.+++++. |. ..+ +.++..
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~---~~~gi~P~~-~~y~~lv~~l~r~G~~--~eA~~~~~~m-~~---~pd----~~~~~a 662 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSME---EKYSITPNL-KHYACVVDLLGRAGKL--TEAYNFINKM-PI---TPD----PAVWGA 662 (857)
T ss_pred HHHhhcChHHHHHHHHHHHH---HHhCCCCch-HHHHHHHHHHHhCCCH--HHHHHHHHHC-CC---CCC----HHHHHH
Confidence 45778888888888886543 233332222 3445578888888887 8999888874 42 122 233444
Q ss_pred HHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 004081 686 EAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLA 758 (775)
Q Consensus 686 LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~ 758 (775)
|-.++.. .++.+.+....++.++ ++ ......+..++.+|...|+.+++.+.....++.+..
T Consensus 663 Ll~ac~~------~~~~e~~e~~a~~l~~----l~--p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 663 LLNACRI------HRHVELGELAAQHIFE----LD--PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHHH------cCChHHHHHHHHHHHh----hC--CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 4333333 4555544443333332 22 123456788999999999999998877666665543
No 93
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.57 E-value=0.00076 Score=60.37 Aligned_cols=81 Identities=25% Similarity=0.173 Sum_probs=72.6
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcccch---hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 004081 568 LLAANQFSEAAAVAHSLFCMCYKFNLQV---ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 644 (775)
Q Consensus 568 l~~~Gd~~eAl~~l~~aL~~~~~~gd~~---~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 644 (775)
.++.|||.+|++.+.+....+...+... .-..+++.+|.++...|++++|+..+.+|+.++++.++....+.++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3789999999999999999888766655 5566899999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 004081 645 AELW 648 (775)
Q Consensus 645 a~l~ 648 (775)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 8765
No 94
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.57 E-value=0.0018 Score=78.60 Aligned_cols=229 Identities=11% Similarity=-0.018 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++..+...++..|++++|+.+++++...- ...+...... +.......|++++|.+++..+... .. .+
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~pd~~t~~~---ll~a~~~~g~~~~a~~i~~~m~~~--g~---~~- 358 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSIDQFTFSI---MIRIFSRLALLEHAKQAHAGLIRT--GF---PL- 358 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHH---HHHHHHhccchHHHHHHHHHHHHh--CC---CC-
Confidence 4678888888999999999999998876532 1111111111 114567889999999988888763 11 11
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
-..+...++..+...|++++|.+.++++.. ....++..+...|.+.|+.++|+..+.+.... |...
T Consensus 359 -d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~P 424 (697)
T PLN03081 359 -DIVANTALVDLYSKWGRMEDARNVFDRMPR---------KNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVAP 424 (697)
T ss_pred -CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC
Confidence 235667788888999999999998877642 12446777888888999999999988876532 2221
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
- ..+...+-..+...|.. ++|.+++++..... | ..-....|..+..++.. .|++++|.+.+++
T Consensus 425 d-~~T~~~ll~a~~~~g~~--~~a~~~f~~m~~~~---g-~~p~~~~y~~li~~l~r------~G~~~eA~~~~~~---- 487 (697)
T PLN03081 425 N-HVTFLAVLSACRYSGLS--EQGWEIFQSMSENH---R-IKPRAMHYACMIELLGR------EGLLDEAYAMIRR---- 487 (697)
T ss_pred C-HHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhc---C-CCCCccchHhHHHHHHh------cCCHHHHHHHHHH----
Confidence 1 22344455667778887 89999888875432 1 12233456667666666 7887777766543
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 750 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa 750 (775)
.+... -..++..+...+...|+.+.+..++.
T Consensus 488 ---~~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 488 ---APFKP-TVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred ---CCCCC-CHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33222 23467788888999999999888553
No 95
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.55 E-value=0.023 Score=58.13 Aligned_cols=171 Identities=14% Similarity=0.014 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
+.....+...|......|+|.+|...|+.....+|.........+.++ ..+...|+|..|...+++.+..++...
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la---~a~y~~~~y~~A~~~~~~fi~~yP~~~-- 76 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLA---YAYYKQGDYEEAIAAYERFIKLYPNSP-- 76 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHH---HHHHHTT-HHHHHHHHHHHHHH-TT-T--
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHCCCCc--
Confidence 345677889999999999999999999999999987665443333333 367899999999999999999877533
Q ss_pred ChhhHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHhhcccc-----------hhHHHHHHHHHHHHHh
Q 004081 553 DMDLKTEASLRHARTLLAAN-----------QFSEAAAVAHSLFCMCYKFNLQ-----------VENASVLLLLAEIHKK 610 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~G-----------d~~eAl~~l~~aL~~~~~~gd~-----------~~~a~aLl~lA~i~~~ 610 (775)
....+.+.+|....... ...+|+..++..+...-...-. ...++-.+..|..|.+
T Consensus 77 ---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 77 ---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25678888888765543 2346777777777544421111 1123346778999999
Q ss_pred cCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 004081 611 SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 654 (775)
Q Consensus 611 ~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~ 654 (775)
.|.+..|...+...+. ..-+....-.++..|++.+..+|..
T Consensus 154 ~~~y~aA~~r~~~v~~---~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIE---NYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp TT-HHHHHHHHHHHHH---HSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred cccHHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHhCCh
Confidence 9999999888876554 4556667778999999999999997
No 96
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.55 E-value=0.021 Score=68.21 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=94.7
Q ss_pred HHH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH
Q 004081 598 ASV-LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 676 (775)
Q Consensus 598 a~a-Ll~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~ 676 (775)
+++ .+.+|.++++.++...++.++.. ...-.+-....-+..+++.+...|.+ ..|+.++-.+. .+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~-----~~n~~~~d~~dL~~d~a~al~~~~~~--~~Al~~l~~i~-----~~~~ 445 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLV-----EDNVWVSDDVDLYLDLADALTNIGKY--KEALRLLSPIT-----NREG 445 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHH-----HhcCChhhhHHHHHHHHHHHHhcccH--HHHHHHHHHHh-----cCcc
Confidence 444 77778888888887777666532 22222334456677899999999998 99999987653 3455
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 677 ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 677 ~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+..+-++..+|+|++. .|.+++|++++++++... ..--++...|+.++-.+|++++|.+
T Consensus 446 ~~~~~vw~~~a~c~~~------l~e~e~A~e~y~kvl~~~------p~~~D~Ri~Lasl~~~~g~~EkalE 504 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYME------LGEYEEAIEFYEKVLILA------PDNLDARITLASLYQQLGNHEKALE 504 (895)
T ss_pred ccchhhhHHHHHHHHH------HhhHHHHHHHHHHHHhcC------CCchhhhhhHHHHHHhcCCHHHHHH
Confidence 5668899999999999 999999999999998654 2334567789999999999997765
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.52 E-value=0.016 Score=62.40 Aligned_cols=265 Identities=13% Similarity=0.023 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCch-----------HHHHHHHhhHHHHHHhcCCHHHHHHHHHHH
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-----------RILLLKLQLLHERSLHRGHLKLAQKVCDEL 542 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~-----------~~~~l~l~l~~~~al~~G~~~~A~~~l~~l 542 (775)
|+..+....|.++..+|++++|.+-++..+..-|..+.. .+|.+..++ ..+.-.||+..|...+..+
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql--~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL--KSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH--HHHhcCCchhhHHHHHHHH
Confidence 567788889999999999999999999988877655432 145555444 4678899999999999999
Q ss_pred hhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHH
Q 004081 543 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 622 (775)
Q Consensus 543 l~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~ 622 (775)
+.+.+ .-+.....++.++++.|+...|+.-+..+-.+ .......+..++.++...|+.+.++....
T Consensus 182 lEi~~--------Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL------s~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 182 LEIQP--------WDASLRQARAKCYIAEGEPKKAIHDLKQASKL------SQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred HhcCc--------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------cccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 98622 13456677899999999999999888776543 34446667777888888888888887777
Q ss_pred HHHHHHHHhCCcHHHHHHHH--------------------------------------------HHHHHHHHcCCChHHH
Q 004081 623 ASLSFCQLLNLDLLKASATL--------------------------------------------TLAELWLSFGPNHAKM 658 (775)
Q Consensus 623 ~AL~la~~~g~~~~~A~al~--------------------------------------------~La~l~l~lG~~~f~~ 658 (775)
++|.+-..+..-+-.-.-+. .++.++ .++.+|-+
T Consensus 248 ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~--~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY--REDEQFGE 325 (504)
T ss_pred HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc--cccCCHHH
Confidence 76655432222111111111 111111 11124467
Q ss_pred HHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhcc-CHHH-----HHHHHHHH
Q 004081 659 ASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE-DHEL-----AAEAFYLI 732 (775)
Q Consensus 659 Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~-~~~~-----~~evl~~L 732 (775)
|++.+.++|..- . .-+.++.--|.+|+. .+.++.|+.-++.|.+.=..-. .+.+ .......+
T Consensus 326 AiqqC~evL~~d----~--~dv~~l~dRAeA~l~------dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~k 393 (504)
T KOG0624|consen 326 AIQQCKEVLDID----P--DDVQVLCDRAEAYLG------DEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGK 393 (504)
T ss_pred HHHHHHHHHhcC----c--hHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 777766665442 1 234556666666776 6667777777777665322111 0111 11111222
Q ss_pred HHHHHhcCCHHHH--HHHHHHHHHHHhhhccCCCCCCC
Q 004081 733 AIVFDKLGRLAER--EEAAALFKEYVLALENENRQDEV 768 (775)
Q Consensus 733 A~l~~~lGd~~~A--~~aAa~f~ql~~~~~~~~~~~~~ 768 (775)
-.-|.-+|-...| .+-..+||.+.+.-.-+|-++|+
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEe 431 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEE 431 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHH
Confidence 2334445543333 33566677776665555555554
No 98
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.019 Score=60.62 Aligned_cols=197 Identities=12% Similarity=0.045 Sum_probs=120.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
..+..|+|++|...++++....+ +......+.+.++.++...|+|++|+..+++.+... .+......++..+
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~~~~~~a~Y~~ 112 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDYVLYMR 112 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCCCchHHHHHHH
Confidence 67788999999999999988655 334456678999999999999999999999998743 3344557788888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~-~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
|.++...+.- .+..-..+-....++...-.+...+-.+...-... ...+|...+..+-. .-|+--
T Consensus 113 g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~---------~la~~e 178 (243)
T PRK10866 113 GLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD---------RLAKYE 178 (243)
T ss_pred HHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH---------HHHHHH
Confidence 8776554411 00000000000111111111122222222222222 11333333322211 122223
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 752 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f 752 (775)
+..|+-|.. .|.+..|+.-++..++.|. .-....++++.+...|..+|+.++|..++...
T Consensus 179 ~~ia~~Y~~------~~~y~AA~~r~~~v~~~Yp---~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 179 LSVAEYYTK------RGAYVAVVNRVEQMLRDYP---DTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHH------cCchHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 355566666 7778778888887777664 44467889999999999999999998866443
No 99
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.028 Score=59.32 Aligned_cols=177 Identities=15% Similarity=0.026 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
........|......|+|++|...++.....+|.........+.++ ..+...|+|.+|...+++...+.+... +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la---~ayy~~~~y~~A~~~~e~fi~~~P~~~--~- 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLI---YAYYKNADLPLAQAAIDRFIRLNPTHP--N- 104 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHhCcCCC--c-
Confidence 3455677888888999999999999999999885433222223333 468899999999999999999877544 2
Q ss_pred hhHHHHHHHHHHHHHHcC---------------ChH---HHHHHHHHHHHHHhhccc-----------chhHHHHHHHHH
Q 004081 555 DLKTEASLRHARTLLAAN---------------QFS---EAAAVAHSLFCMCYKFNL-----------QVENASVLLLLA 605 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~G---------------d~~---eAl~~l~~aL~~~~~~gd-----------~~~~a~aLl~lA 605 (775)
...+.+.+|......+ |.. +|+..+++.+...-...- +..-++-.+..|
T Consensus 105 --~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 105 --IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred --hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888887764444 223 455666666543321110 011123356778
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004081 606 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQ 664 (775)
Q Consensus 606 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe 664 (775)
..|.+.|.+..|+.-+...+. ..-.....-+++..|.+.+..+|.. ++|.....
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~---~Yp~t~~~~eal~~l~~ay~~lg~~--~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLR---DYPDTQATRDALPLMENAYRQLQLN--AQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHcCCh--HHHHHHHH
Confidence 889999999888877765554 5556667788999999999999999 88877544
No 100
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.024 Score=58.72 Aligned_cols=188 Identities=11% Similarity=-0.024 Sum_probs=134.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
|.++.+.....-+..+....+|+.|...+.++..-.+........+.++=..|.+........++..++.+|..+..++|
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 44444444445555556667777777777777654443333444566666666666777778888888889999999999
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
-+--.+.++-.-|.+... -.| +.|+.++++++..+.+.+.....-..+--.++.++. ...+.+|--.+.+=
T Consensus 106 spdtAAmaleKAak~len-v~P--d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr------l~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALEN-VKP--DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR------LEKFTEAATAFLKE 176 (308)
T ss_pred CcchHHHHHHHHHHHhhc-CCH--HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh------hHHhhHHHHHHHHh
Confidence 988888888877777643 345 999999999999987766555444445555666776 56666666666666
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 713 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 713 l~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
..++.++.....++..+..+-.+|....|+..++++-
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 6777777778888888888888888888999887744
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.033 Score=58.06 Aligned_cols=210 Identities=16% Similarity=0.037 Sum_probs=147.7
Q ss_pred hhhHHHHHHHHHHHHhCcHHHHHH---HHHHHHhhhcCC-CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhc
Q 004081 434 LVGSSYLLRATAWEAYGSAPLTRV---NTLIYATCFSDG-SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV 509 (775)
Q Consensus 434 l~g~~~~l~aalW~~~G~~~La~l---~~~i~~~~~~~~-a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~ 509 (775)
........+-..|..++...--.+ .+.+. .+... .-.++.-..+-.+..+....|+.+.|...+++...+||
T Consensus 8 ~~~~~l~~~~~~wr~~~~rnseevv~l~~~~~--~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-- 83 (289)
T KOG3060|consen 8 VSWEELRDQMRKWREETVRNSEEVVQLGSEVL--NYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-- 83 (289)
T ss_pred HHHHHHHHHHHHHHhccccCHHHHHHHHHHHH--HHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC--
Confidence 334444444558988776543333 23322 22222 25667777778888888899999999999999999995
Q ss_pred CchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 510 SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 510 ~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
++.+...+.- .+.-..|.|++|.++++.++.= ||. -....-++.-++.++|.-.+|++.+...++.+-
T Consensus 84 ~S~RV~~lka----m~lEa~~~~~~A~e~y~~lL~d-------dpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~ 151 (289)
T KOG3060|consen 84 GSKRVGKLKA----MLLEATGNYKEAIEYYESLLED-------DPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM 151 (289)
T ss_pred CChhHHHHHH----HHHHHhhchhhHHHHHHHHhcc-------Ccc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 4555444431 1455689999999999999882 333 344455888888999999999999999997654
Q ss_pred hcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHh
Q 004081 590 KFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALP 668 (775)
Q Consensus 590 ~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~-~f~~Al~lLe~aLp 668 (775)
.-..++..+++||...|++..|.-.+.+.+-+-- +. .....+||+++.-+|-. ..+-|+.++++++.
T Consensus 152 ------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P-----~n-~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 152 ------NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP-----FN-PLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred ------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC-----Cc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2367889999999999999999999988765531 11 12234477776655542 44789999999988
Q ss_pred HHH
Q 004081 669 LIL 671 (775)
Q Consensus 669 ~il 671 (775)
+..
T Consensus 220 l~~ 222 (289)
T KOG3060|consen 220 LNP 222 (289)
T ss_pred hCh
Confidence 763
No 102
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.46 E-value=0.0041 Score=71.58 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=121.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHH
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 559 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~ 559 (775)
...+...+..|+..+|..+|.++.+--|. ...+|..+. .......++++|+.++.++...+. ...
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pn--seeiwlaav----Kle~en~e~eraR~llakar~~sg---------TeR 652 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAV----KLEFENDELERARDLLAKARSISG---------TER 652 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHH----HHhhccccHHHHHHHHHHHhccCC---------cch
Confidence 33455566779999999999987765542 334787765 346788899999999999876321 345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
+.+--+.+...+|+.++|++++++++..+.. -...++++|+|+.+.++.+.|...+.+.+..|-.. .-
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~------ip 720 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS------IP 720 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC------ch
Confidence 7788889999999999999999999975433 36789999999999999999999998888777421 12
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
-.+.|+.+-...|.+ -+|+..|+.+
T Consensus 721 LWllLakleEk~~~~--~rAR~ildra 745 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQL--VRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHhcch--hhHHHHHHHH
Confidence 234577777778877 8898888887
No 103
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.46 E-value=0.017 Score=59.04 Aligned_cols=178 Identities=17% Similarity=0.070 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
+.....++..|...+..|+|.+|++.++.+.... ........+++.+|.++...|++..|+..+.+-+...- ..
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~---P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---~~ 75 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY---PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---NS 75 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---T-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CC
Confidence 3467889999999999999999999999988743 34556678899999999999999999999987776543 33
Q ss_pred HHHHHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHhHHHhcCCHH-----------HHHHHHHHHHHhhhcCC
Q 004081 635 LLKASATLTLAELWLSFGPN---------HAKMASNLIQQALPLILGHGGLE-----------LRARAFIAEAKCLLSDP 694 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~---------~f~~Al~lLe~aLp~il~~G~~~-----------l~A~a~~~LAr~~lA~~ 694 (775)
.....++..+|..+..+... ...+|...++..+...-.+.-.. ..|.--+.+|+-+..
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-- 153 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK-- 153 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34556677777766544321 22567777777654443322221 112222334455555
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 695 SFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 695 ~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.|.+..|+..++..++.| .+.....+++..++..|..+|+...+..
T Consensus 154 ----~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 ----RGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp ----TT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ----cccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 889999999999888776 5556778899999999999999996654
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0019 Score=67.30 Aligned_cols=159 Identities=18% Similarity=0.083 Sum_probs=122.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHH
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 559 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~ 559 (775)
.+++..+...|+-+.++.++.......+ ... ..+..++ ...++.|+|..|...+.++..+.+ . .++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~---~d~-~ll~~~g--k~~~~~g~~~~A~~~~rkA~~l~p----~----d~~ 135 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP---KDR-ELLAAQG--KNQIRNGNFGEAVSVLRKAARLAP----T----DWE 135 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc---ccH-HHHHHHH--HHHHHhcchHHHHHHHHHHhccCC----C----Chh
Confidence 7888888889998888888776443222 121 1111111 478899999999999999988643 2 367
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
++..++-+|...|++++|..-+.+++++. ..+..+..++|..+.-.|+++.|..++.++...... -..
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a------d~~ 203 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELA------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA------DSR 203 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhc------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC------chH
Confidence 89999999999999999999999999753 445778999999999999999999999887665431 135
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
+.-+|+.++-..|+. .+|.++...=
T Consensus 204 v~~NLAl~~~~~g~~--~~A~~i~~~e 228 (257)
T COG5010 204 VRQNLALVVGLQGDF--REAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhhcCCh--HHHHhhcccc
Confidence 667799999999998 8888875543
No 105
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.43 E-value=0.002 Score=58.51 Aligned_cols=103 Identities=15% Similarity=0.024 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.++..+|..+..+|+|++|...++.+...+|...........++ ..++..|++++|...+.++....+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLG---EAYYAQGKYADAAKAFLAVVKKYPKS-----PK 74 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH---HHHHhhccHHHHHHHHHHHHHHCCCC-----Cc
Confidence 46788999999999999999999999988764332121122222 36889999999999999998864421 11
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCM 587 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~ 587 (775)
...++...+.++...|++++|...+++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3467899999999999999999999998874
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.41 E-value=0.0019 Score=65.89 Aligned_cols=126 Identities=15% Similarity=0.024 Sum_probs=101.6
Q ss_pred cCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 004081 529 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 608 (775)
Q Consensus 529 ~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~ 608 (775)
.++..++...+.+++...+ . -.+++..+|.++...|++++|+..+++++.. ......++..+|.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P----~----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP----Q----NSEQWALLGEYYLWRNDYDNALLAYRQALQL------RGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCC----C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Confidence 4566777777778777522 2 3568999999999999999999999999873 345688889999975
Q ss_pred -HhcCC--hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH
Q 004081 609 -KKSGN--AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 676 (775)
Q Consensus 609 -~~~G~--~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~ 676 (775)
...|+ +.+|...+.+++.+--.. ..++..||..+...|+. ++|+..++.++...-...++
T Consensus 118 ~~~~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~--~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 118 YYQAGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADY--AQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCccH
Confidence 78788 589999999998886432 47888999999999998 99999999999887665544
No 107
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.41 E-value=0.051 Score=65.18 Aligned_cols=258 Identities=18% Similarity=0.077 Sum_probs=152.4
Q ss_pred HHHHHHhCcHHHHHHHHHHH-HhhhcCC----CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH
Q 004081 443 ATAWEAYGSAPLTRVNTLIY-ATCFSDG----SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 517 (775)
Q Consensus 443 aalW~~~G~~~La~l~~~i~-~~~~~~~----a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l 517 (775)
...|..+-...++.+.+.+- +..+-.. ...+-.+....=.|.+...+|++++|.++.+.++...+...... .++
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~ 498 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIV 498 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhh
Confidence 34566655555555554331 1111111 12223333333345566679999999999999999877655432 222
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhH
Q 004081 518 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN 597 (775)
Q Consensus 518 ~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~ 597 (775)
++......+.-+|++++|..+..++...++..+ -+.....+.+..+.++.++|+-..|...........+-.......
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 222223578899999999999999999887665 566677888899999999994433333333322222222222221
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc-CC
Q 004081 598 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GG 675 (775)
Q Consensus 598 a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~-~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~-G~ 675 (775)
.-.+...+.++...-+.+.+...+..++++...... +.....+.+.|+.+....|+. ++|...+++........ +.
T Consensus 577 ~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl--~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 577 EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL--DKALAQLDELERLLLNGQYH 654 (894)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCCC
Confidence 112222333333333355565555556665533333 333334445799999999999 99999999998877665 45
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004081 676 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 711 (775)
Q Consensus 676 ~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~ 711 (775)
.+-.|.++..-.....+ .|+++.+..++.+
T Consensus 655 ~~~~a~~~~v~~~lwl~------qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLA------QGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcc------cCCHHHHHHHHHh
Confidence 55555555555444555 5555555555554
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0034 Score=61.94 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
...+.++++.+.++...|++++|+..+++++.+. .+......++..+|.++...|+++.|+..+.+|+.+-...+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-- 106 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-- 106 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--
Confidence 3478889999999999999999999999998753 23344567899999999999999999999999998743322
Q ss_pred HHHHHHHHHHHHHHH-------HcCCChHHHHHHHHHHHHhHH
Q 004081 635 LLKASATLTLAELWL-------SFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 635 ~~~A~al~~La~l~l-------~lG~~~f~~Al~lLe~aLp~i 670 (775)
.+...+|.++. .+|+. ++|+..+++++...
T Consensus 107 ----~~~~~la~i~~~~~~~~~~~g~~--~~A~~~~~~a~~~~ 143 (168)
T CHL00033 107 ----QALNNMAVICHYRGEQAIEQGDS--EIAEAWFDQAAEYW 143 (168)
T ss_pred ----HHHHHHHHHHHHhhHHHHHcccH--HHHHHHHHHHHHHH
Confidence 33444555555 77776 77777777776654
No 109
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.0017 Score=60.85 Aligned_cols=102 Identities=25% Similarity=0.195 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHH
Q 004081 599 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 678 (775)
Q Consensus 599 ~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l 678 (775)
+++..+|.++...|++++|++++.+|++.- . .......+++.+|..+..+|++ ++|+.+|++.+. ++++...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~--deA~~~L~~~~~---~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRY--DEALALLEEALE---EFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH---HCCCccc
Confidence 567899999999999999999999998742 1 1334567889999999999999 999999999875 3455445
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 679 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 679 ~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
...+...+|-++.. .|++.+|+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~------~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYN------LGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 55555667777777 8999999999988875
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.39 E-value=0.0039 Score=63.65 Aligned_cols=122 Identities=16% Similarity=0.056 Sum_probs=87.4
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 568 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll 568 (775)
.++.+++...++.+.+.-|.. ...|..-- ..++..|++++|...++++..+.+ + ...++...+.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~--~~~w~~Lg----~~~~~~g~~~~A~~a~~~Al~l~P-----~---~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN--SEQWALLG----EYYLWRNDYDNALLAYRQALQLRG-----E---NAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC--HHHHHHHH----HHHHHCCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHH
Confidence 456677777777766655432 22343321 357788999999999998888743 2 345677778765
Q ss_pred -HHcCC--hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 569 -LAANQ--FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 569 -~~~Gd--~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
...|+ +++|.+.+++++. .......++.++|.++...|++++|+..+.+++++-..
T Consensus 118 ~~~~g~~~~~~A~~~l~~al~------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 118 YYQAGQHMTPQTREMIDKALA------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHhcCCCCcHHHHHHHHHHHH------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 66677 5899999988886 23445678888999999999999999999888888654
No 111
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.29 E-value=0.0015 Score=56.73 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 004081 529 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 608 (775)
Q Consensus 529 ~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~ 608 (775)
.|+|..|..+++++....+. ++ ....++.+|.++...|+|.+|++.+++ +. .......+...+|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~----~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~------~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT----NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LK------LDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG----TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT------HHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC----Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC------CCCCCHHHHHHHHHHH
Confidence 68999999999999996331 22 456778899999999999999999988 32 2223466777889999
Q ss_pred HhcCChhhHHHHHHHH
Q 004081 609 KKSGNAVLGIPYALAS 624 (775)
Q Consensus 609 ~~~G~~~~Al~~l~~A 624 (775)
...|++++|+..+.+|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999998765
No 112
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.0076 Score=59.75 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=71.6
Q ss_pred ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 592 NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 592 gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
......+.++..+|.++...|++++|+.++.+++.+..... ..+.+...+|.++..+|+. ++|+..+++++....
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p 103 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEH--DKALEYYHQALELNP 103 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCc
Confidence 33455667777788888888888888888877777653221 2345667778888888877 788888877776532
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCC-CCCCCChHHHHHHHHHHHHHHHhc
Q 004081 672 GHGGLELRARAFIAEAKCLLSDPS-FSVSQNPEAVLDPLRQASEELQVL 719 (775)
Q Consensus 672 ~~G~~~l~A~a~~~LAr~~lA~~~-~~~~g~~~~Al~~L~~Al~~f~~l 719 (775)
. ...++..+|.++..... ....++.+.|+..+++|.+.+++.
T Consensus 104 ~------~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a 146 (172)
T PRK02603 104 K------QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQA 146 (172)
T ss_pred c------cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHH
Confidence 1 13344455555544111 001455666666666666666543
No 113
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.25 E-value=0.099 Score=57.66 Aligned_cols=211 Identities=17% Similarity=0.057 Sum_probs=132.9
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhh------
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVM------ 545 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L------ 545 (775)
.++...+....+..+..+|+|+.|..-+.++.+.-|... ..++++. +.++..|+|.+...++..+..-
T Consensus 149 ~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~----~vlrLa~--r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 149 GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP----EVLRLAL--RAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh----HHHHHHH--HHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 557788889999999999999999999998887665322 2333333 5688888888888887755441
Q ss_pred -------------h-hcCCCCChhh--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhH
Q 004081 546 -------------A-SSVTGVDMDL--------------KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN 597 (775)
Q Consensus 546 -------------~-~~~~~~D~~~--------------~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~ 597 (775)
. ....+.+.++ ..+.....+..++..|++++|.+.+.+++..- .|..
T Consensus 223 e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~~-- 297 (400)
T COG3071 223 EAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDPR-- 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cChh--
Confidence 0 0011111111 12344556777788888888888888887621 1111
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHH
Q 004081 598 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 677 (775)
Q Consensus 598 a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~ 677 (775)
.....+ ..+.|++..=+..+. .-...++++. ..+..||.++..-+.. .+|...|+.+++.-.+
T Consensus 298 --L~~~~~--~l~~~d~~~l~k~~e---~~l~~h~~~p---~L~~tLG~L~~k~~~w--~kA~~~leaAl~~~~s----- 360 (400)
T COG3071 298 --LCRLIP--RLRPGDPEPLIKAAE---KWLKQHPEDP---LLLSTLGRLALKNKLW--GKASEALEAALKLRPS----- 360 (400)
T ss_pred --HHHHHh--hcCCCCchHHHHHHH---HHHHhCCCCh---hHHHHHHHHHHHhhHH--HHHHHHHHHHHhcCCC-----
Confidence 111111 123344433222222 2224555554 5667788887665554 9999999988877543
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 004081 678 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 718 (775)
Q Consensus 678 l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~ 718 (775)
+..+..+|+++-+ .|++.+|-+..++++..+..
T Consensus 361 --~~~~~~la~~~~~------~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 361 --ASDYAELADALDQ------LGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred --hhhHHHHHHHHHH------cCChHHHHHHHHHHHHHhcC
Confidence 4455566666777 88888888888888866653
No 114
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.23 E-value=0.0011 Score=55.48 Aligned_cols=96 Identities=19% Similarity=0.093 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
+++.++.++...|++++|+..+++++..... ...++..+|.++...|+++.|...+.+++.+..... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 4677889999999999999999998864221 237788999999999999999999999888754322 5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
+...++.++...|+. ++|...++.++..
T Consensus 70 ~~~~~~~~~~~~~~~--~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGKY--EEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHcc
Confidence 677789999999997 9999999887653
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.22 E-value=0.0037 Score=58.73 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=63.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.++..|++.+|...++++..+.+ + ...+...++.++...|++++|.+.+++++.. ......++..+
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~p-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l 91 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYDP-----Y---NSRYWLGLAACCQMLKEYEEAIDAYALAAAL------DPDDPRPYFHA 91 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhCC-----C---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCChHHHHHH
Confidence 46667778888777777766422 1 3456777777877888888888877777652 23346666777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
|.++...|++++|+..+.+++.+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 7888888888888887777777653
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.20 E-value=0.0029 Score=59.44 Aligned_cols=100 Identities=17% Similarity=0.072 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
..+...++..+...|++.+|.+.++.++.. ......++..+|.++...|++..|+..+.+++.+... .
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~ 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD------D 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------C
Confidence 467889999999999999999999888762 2345788899999999999999999999998887422 2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
......+|.++...|+. ++|...++.++...-
T Consensus 85 ~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p 116 (135)
T TIGR02552 85 PRPYFHAAECLLALGEP--ESALKALDLAIEICG 116 (135)
T ss_pred hHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcc
Confidence 45667799999999998 999999999987753
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.16 E-value=0.0028 Score=70.65 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=78.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|..++.+++.+.+ . ...+++.++.++..+|++++|+..+++++.+. .....++..
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-------~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a~~~ 75 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-------N-NAELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKAYLR 75 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHHHHH
Confidence 478899999999999999998633 1 34678999999999999999999999998742 345778999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+|.++...|+++.|+..+.+|+.+.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999886
No 118
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.16 E-value=0.0052 Score=55.74 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
...+..+..+...|++++|++.+++++... .+......++..+|.++.+.|++..|+..+.+++..... .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---SPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---CCccc
Confidence 467889999999999999999999988632 222334678899999999999999999999998876421 11224
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
.++..+|.++..+|+. ++|...+++++...
T Consensus 77 ~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDK--EKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCCh--HHHHHHHHHHHHHC
Confidence 5678899999999998 99999999998764
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.16 E-value=0.005 Score=60.12 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
..+..+..+-.+...|++++|...++-+.. ..++.++-++.+|.++...|++..|+..+.+|+.+.-. +
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--d--- 102 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--A--- 102 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--C---
Confidence 678899999999999999999999976654 34677899999999999999999999999999988742 2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+++..++|.+++.+|+. +.|++.|+.++...
T Consensus 103 -p~~~~~ag~c~L~lG~~--~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 -PQAPWAAAECYLACDNV--CYAIKALKAVVRIC 133 (157)
T ss_pred -chHHHHHHHHHHHcCCH--HHHHHHHHHHHHHh
Confidence 46778899999999999 99999999999988
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.13 E-value=0.006 Score=59.57 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=77.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.....|++++|..+++-+..+ ||. .+..++++|.++..+|+|.+|++.+..++. ......+.....
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~-------Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~------L~~ddp~~~~~a 109 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIY-------DAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQ------IKIDAPQAPWAA 109 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------Ccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCchHHHHH
Confidence 456788888888888887775 443 467899999999999999999999999986 234668889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
|.++...|+.+.|...+..|+.+|.
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999993
No 121
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.10 E-value=0.029 Score=55.94 Aligned_cols=128 Identities=16% Similarity=0.071 Sum_probs=100.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.....|++.+|+.++.++++- +-..| ...++.++...++.+++.+|...++.+.+. .......+.++..
T Consensus 98 al~elGr~~EA~~hy~qalsG---~fA~d----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~----~pa~r~pd~~Ll~ 166 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSG---IFAHD----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEY----NPAFRSPDGHLLF 166 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhcc---ccCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHhhc----CCccCCCCchHHH
Confidence 567899999999999998872 11113 456888999999999999999999888762 2233345678899
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
|.++...|.+..|.+.+..+++..-. ..+++..++.+.++|+. .+|..-+..+...+..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg-------~~ar~~Y~e~La~qgr~--~ea~aq~~~v~d~~~r 225 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG-------PQARIYYAEMLAKQGRL--REANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHh
Confidence 99999999999999999888877643 45667789999999988 8888877777665543
No 122
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.08 E-value=0.0052 Score=60.98 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
....+.+.+.++.++...|++++|+..+++++.... +......++..+|.++...|+++.|+..+.+++.+...
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--- 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 345678899999999999999999999999987532 22334678999999999999999999999999987432
Q ss_pred cHHHHHHHHHHHHHHHHcCCC
Q 004081 634 DLLKASATLTLAELWLSFGPN 654 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~ 654 (775)
...+...+|.++..+|..
T Consensus 105 ---~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 105 ---QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred ---cHHHHHHHHHHHHHcCCh
Confidence 245556778888888874
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.17 Score=52.87 Aligned_cols=192 Identities=20% Similarity=0.086 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHhhhc-CchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHH
Q 004081 492 YKEAFSALKIAEEKFLSV-SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA 570 (775)
Q Consensus 492 y~eAl~~L~~a~~~f~~~-~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~ 570 (775)
.++-.++-.+.+.-...- .-..+|.+-.++ |-.++..|+.+.|...+.++..-++. ...+....|..+-+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV-~IAAld~~~~~lAq~C~~~L~~~fp~--------S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQV-FIAALDTGRDDLAQKCINQLRDRFPG--------SKRVGKLKAMLLEA 98 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHhCCC--------ChhHHHHHHHHHHH
Confidence 444444444444322221 123468876553 24789999999999999999886642 34567788889999
Q ss_pred cCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 004081 571 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS 650 (775)
Q Consensus 571 ~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~ 650 (775)
.|+|++|++.++..+. .| +...-+...+--+....|..-.|+..+..=++..- .-.++...|+++|+.
T Consensus 99 ~~~~~~A~e~y~~lL~-----dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLE-----DD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM------NDQEAWHELAEIYLS 166 (289)
T ss_pred hhchhhHHHHHHHHhc-----cC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHh
Confidence 9999999999999986 33 33344444666677789999999988887777763 124777889999999
Q ss_pred cCCChHHHHHHHHHHHHhHHHhcCCHHHH--HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 004081 651 FGPNHAKMASNLIQQALPLILGHGGLELR--ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 651 lG~~~f~~Al~lLe~aLp~il~~G~~~l~--A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~ 717 (775)
+|+. ++|.-.+++++-+ --+..++.. |..+++.|- .+.+..|+.++.+|++.--
T Consensus 167 ~~~f--~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg----------~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 167 EGDF--EKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGG----------AENLELARKYYERALKLNP 222 (289)
T ss_pred HhHH--HHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHhCh
Confidence 9986 9999999998532 122232222 333444431 5667889999999998764
No 124
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.067 Score=59.21 Aligned_cols=222 Identities=13% Similarity=0.021 Sum_probs=145.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHH-----HH---HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIL-----LL---KLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~-----~l---~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~ 550 (775)
+.-.+..+-..++.+.|..++++++..-|........ .+ +.+. ..++..|+|..|.+.+..++.+.+.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g--N~~fk~G~y~~A~E~Yteal~idP~-- 281 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG--NDAFKNGNYRKAYECYTEALNIDPS-- 281 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh--hhHhhccchhHHHHHHHHhhcCCcc--
Confidence 3334445556889999999999999888877654311 11 1222 5789999999999999999997443
Q ss_pred CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 551 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 551 ~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
.....+..+.+++.+.+++|+..+|+.-.+.++.+ ...-+.+++..|.+|...+..+.|...+.+|+.+-..
T Consensus 282 --n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 282 --NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred --ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 23345678889999999999999999999999864 2334889999999999999999999999999988753
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004081 631 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 710 (775)
Q Consensus 631 ~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~ 710 (775)
...+..|.+....+-.. +=.+ +=.+|-..+.-.+- .-..+|-.+|-++.-+ ...|.-.+|..-+.
T Consensus 354 -------~e~r~~l~~A~~aLkkS---kRkd-~ykilGi~~~as~~-eikkayrk~AL~~Hpd---~~agsq~eaE~kFk 418 (486)
T KOG0550|consen 354 -------CEIRRTLREAQLALKKS---KRKD-WYKILGISRNASDD-EIKKAYRKLALVHHPD---KNAGSQKEAEAKFK 418 (486)
T ss_pred -------cchHHHHHHHHHHHHHh---hhhh-HHHHhhhhhhcccc-hhhhHHHHHHHHhCCC---cCcchhHHHHHHHH
Confidence 22333344444333322 1111 22234443332222 2223555555444332 22454456666666
Q ss_pred HHHHHHHhccCHHHHHH
Q 004081 711 QASEELQVLEDHELAAE 727 (775)
Q Consensus 711 ~Al~~f~~l~~~~~~~e 727 (775)
++-+.|..++++....+
T Consensus 419 evgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 419 EVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHHHhcCHHHHhh
Confidence 66666666666655433
No 125
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.071 Score=58.95 Aligned_cols=204 Identities=13% Similarity=0.061 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..+.--.|.++...|+|+.-..+......+-. .....|....+ ..+.+.++..|..+.+....+ |+.
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~----~l~~~K~~~rAL~~~eK~I~~-------~~r 332 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQ----LLYDEKKFERALNFVEKCIDS-------EPR 332 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhh----hhhhhhhHHHHHHHHHHHhcc-------Ccc
Confidence 45556667778888888877666554332210 01225665553 345666777777777766654 211
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH------
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ------ 629 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~------ 629 (775)
...++..+|.+++..|+..+|.-.++.+..+ .+-+.+++..+-+.|+..|+..+|.-.+..+...-.
T Consensus 333 -~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 333 -NHEALILKGRLLIALERHTQAVIAFRTAQML------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred -cchHHHhccHHHHhccchHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence 3456777777777777777777777666542 223344555555555555555555444432222111
Q ss_pred ------------------------HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHH
Q 004081 630 ------------------------LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 685 (775)
Q Consensus 630 ------------------------~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~ 685 (775)
.......-..|.+.+|+++..-|.. ..+..+++..|... .|. ..+..
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~--~D~i~LLe~~L~~~---~D~----~LH~~ 476 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT--KDIIKLLEKHLIIF---PDV----NLHNH 476 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc--chHHHHHHHHHhhc---ccc----HHHHH
Confidence 1122233345566678888878887 88888888877654 232 34566
Q ss_pred HHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 686 EAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 686 LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
||....| ...+.+|.+++..|+.
T Consensus 477 Lgd~~~A------~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 477 LGDIMRA------QNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHH------hhhHHHHHHHHHHHHh
Confidence 7777777 6777778877777764
No 126
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.077 Score=55.10 Aligned_cols=146 Identities=17% Similarity=0.059 Sum_probs=116.8
Q ss_pred cchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 593 LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 593 d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
|..+.+..+-.-+..|.....|++|-..+++|..-...+....-.|.+.-..+.+...+-.. .++.++++.+..+..+
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 34444555555666677888888888888888877777777777778777777777777766 9999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 673 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 673 ~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+|++.-.|-++---|++.-. -+|+.|+..+++|++.++.-+...+.-+-+...++++-.+....++--
T Consensus 104 ~GspdtAAmaleKAak~len-------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALEN-------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 99999988887777765543 568899999999999998888888888888888888888777776533
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.99 E-value=0.0037 Score=69.65 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHH
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA 640 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a 640 (775)
+...|..+...|+|++|++.+++++.. ......++..+|.++...|++..|+..+.+|+.+.-. .+.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHH
Confidence 456688889999999999999999973 2234678899999999999999999999999998642 3567
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 641 TLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 641 l~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
.+.+|.++..+|+. ++|+..+++++.+-
T Consensus 73 ~~~lg~~~~~lg~~--~eA~~~~~~al~l~ 100 (356)
T PLN03088 73 YLRKGTACMKLEEY--QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhCCH--HHHHHHHHHHHHhC
Confidence 88899999999998 99999999998754
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.98 E-value=0.0036 Score=51.84 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-NAVLGIPYALASLSF 627 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G-~~~~Al~~l~~AL~l 627 (775)
+.++..+|..+...|+|++|+..+++++.. ......++..+|.++...| ++.+|+..+.+|+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567899999999999999999999999974 2445779999999999999 799999999999876
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.97 E-value=0.046 Score=61.64 Aligned_cols=126 Identities=18% Similarity=0.082 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..+..-.|......|.+++|+..|+.....+| ++ .|..-+.. +.++..|+..+|.+.++.++++ ||.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P---~N-~~~~~~~~--~i~~~~nk~~~A~e~~~kal~l-------~P~ 372 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQP---DN-PYYLELAG--DILLEANKAKEAIERLKKALAL-------DPN 372 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCC---CC-HHHHHHHH--HHHHHcCChHHHHHHHHHHHhc-------CCC
Confidence 34555666667788999999999999777776 22 23333222 5789999999999999999997 443
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA 621 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l 621 (775)
. ....++.+.+++..|++.+|+..++..+. ........+..+|+.|...|+..++..-.
T Consensus 373 ~-~~l~~~~a~all~~g~~~eai~~L~~~~~------~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 373 S-PLLQLNLAQALLKGGKPQEAIRILNRYLF------NDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred c-cHHHHHHHHHHHhcCChHHHHHHHHHHhh------cCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 3 56788999999999999999999988874 33445667888888888888876665433
No 130
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.037 Score=57.04 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=111.2
Q ss_pred CChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc
Q 004081 572 NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF 651 (775)
Q Consensus 572 Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~l 651 (775)
+.|++|.+++.++-..++-.........+.+..|..|.+.| ..+-.+...+.-+..+- -
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--------------------skhDaat~YveA~~cyk-k 86 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--------------------SKHDAATTYVEAANCYK-K 86 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--------------------CchhHHHHHHHHHHHhh-c
Confidence 46788888887776544432222222334444444444444 44444444444455554 3
Q ss_pred CCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004081 652 GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 731 (775)
Q Consensus 652 G~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~ 731 (775)
++| ++|...|+.++.+....|.....|.-+..+|..+-. ...+.++|+.++++|.+.|..=+.....-.++.+
T Consensus 87 ~~~--~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs-----dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 87 VDP--EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES-----DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred cCh--HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh-----hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 477 899999999999999999999999999999988876 2377899999999999999988888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHh
Q 004081 732 IAIVFDKLGRLAEREEAAALFKEYVL 757 (775)
Q Consensus 732 LA~l~~~lGd~~~A~~aAa~f~ql~~ 757 (775)
.|..-..+|+...|.+ +|.+...
T Consensus 160 vA~yaa~leqY~~Ai~---iyeqva~ 182 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAID---IYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHH
Confidence 8888888888877755 6666544
No 131
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.94 E-value=0.041 Score=64.87 Aligned_cols=222 Identities=18% Similarity=0.121 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcC
Q 004081 493 KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN 572 (775)
Q Consensus 493 ~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~G 572 (775)
.+++..|+++.+.-+... .....+++ .+-.+++...|.+.+++++++-+ .| .+.++..++.++-+.+
T Consensus 461 ~kslqale~av~~d~~dp---~~if~lal---q~A~~R~l~sAl~~~~eaL~l~~----~~---~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDP---LVIFYLAL---QYAEQRQLTSALDYAREALALNR----GD---SAKAWHLLALVLSAQK 527 (799)
T ss_pred HHHHHHHHHHHhcCCCCc---hHHHHHHH---HHHHHHhHHHHHHHHHHHHHhcC----Cc---cHHHHHHHHHHHhhhh
Confidence 456667777765543222 12222332 45567789999999999998722 24 6789999999999999
Q ss_pred ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHH
Q 004081 573 QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL---LNLDLLKASATLTLAELWL 649 (775)
Q Consensus 573 d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~---~g~~~~~A~al~~La~l~l 649 (775)
++.+|+.+++.++.... +- ...+..+..|-+..|++++++..+..-|++.+. ......+......-+.+++
T Consensus 528 r~~~Al~vvd~al~E~~---~N---~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFG---DN---HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred hhHHHHHHHHHHHHHhh---hh---hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 99999999999997543 22 223344555566799999999999988888761 1111123444555677777
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhcCCHHH--------------------HHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004081 650 SFGPNHAKMASNLIQQALPLILGHGGLEL--------------------RARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 709 (775)
Q Consensus 650 ~lG~~~f~~Al~lLe~aLp~il~~G~~~l--------------------~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L 709 (775)
..+.+ .+|......+...+...+.... .-..+.+.|..+.. .+..+.|..++
T Consensus 602 a~~q~--~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~------~~~~~~a~~CL 673 (799)
T KOG4162|consen 602 ALSQP--TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL------SGNDDEARSCL 673 (799)
T ss_pred Ccccc--cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHh------cCCchHHHHHH
Confidence 77776 7777777776655543222111 11122233333333 56667777777
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 710 RQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 710 ~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.+|..++ ..-..+++..|..+...|...+|-+
T Consensus 674 ~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 674 LEASKID------PLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred HHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 7777766 4556677777777777777777765
No 132
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.93 E-value=0.013 Score=55.23 Aligned_cols=107 Identities=18% Similarity=0.111 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
.+-+.+..+...|+.+.|++.+.+++..|- .++.+++++|+.+.-.|+++.|+..+.+|++++-.. ..-...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAP------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcc------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence 345678888999999999999999998764 348899999999999999999999999999998543 445566
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHH
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 680 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A 680 (775)
+.+.-|.++..+|.. +.|+.-|+.+..+ |+...+-
T Consensus 117 a~vQRg~lyRl~g~d--d~AR~DFe~AA~L----GS~FAr~ 151 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGND--DAARADFEAAAQL----GSKFARE 151 (175)
T ss_pred HHHHHHHHHHHhCch--HHHHHhHHHHHHh----CCHHHHH
Confidence 777778999999999 9999999888544 6665543
No 133
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.92 E-value=0.0047 Score=50.59 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+.+|..++..|+|++|++.+++++. .......++..+|.++...|++++|+..+.+++.+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3578899999999999999999985 446689999999999999999999999999998764
No 134
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.91 E-value=0.0041 Score=53.99 Aligned_cols=83 Identities=18% Similarity=0.152 Sum_probs=63.7
Q ss_pred cCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 004081 571 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS 650 (775)
Q Consensus 571 ~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~ 650 (775)
.|+|+.|+..+++++..... .. ....+..+|.++.+.|++.+|+..+.+ +.... ....+...+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC---Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHHHHH
Confidence 58999999999999974332 11 666788899999999999999999987 33322 124556678999999
Q ss_pred cCCChHHHHHHHHHHH
Q 004081 651 FGPNHAKMASNLIQQA 666 (775)
Q Consensus 651 lG~~~f~~Al~lLe~a 666 (775)
+|+. ++|+.+|+++
T Consensus 71 l~~y--~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKY--EEAIKALEKA 84 (84)
T ss_dssp TT-H--HHHHHHHHHH
T ss_pred hCCH--HHHHHHHhcC
Confidence 9998 9999999874
No 135
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.90 E-value=0.17 Score=58.84 Aligned_cols=227 Identities=16% Similarity=0.024 Sum_probs=154.2
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHH
Q 004081 487 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 566 (775)
Q Consensus 487 a~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ 566 (775)
....+|+.|..+|..+..+ .+..+.|+-... ..+.+|+.++|.+++++.+..++ | -....+.+|.
T Consensus 629 ~en~e~eraR~llakar~~---sgTeRv~mKs~~----~er~ld~~eeA~rllEe~lk~fp-----~---f~Kl~lmlGQ 693 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI---SGTERVWMKSAN----LERYLDNVEEALRLLEEALKSFP-----D---FHKLWLMLGQ 693 (913)
T ss_pred hccccHHHHHHHHHHHhcc---CCcchhhHHHhH----HHHHhhhHHHHHHHHHHHHHhCC-----c---hHHHHHHHhH
Confidence 4567789999888877753 345666765542 45678899999999999999776 4 5577888999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 004081 567 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 646 (775)
Q Consensus 567 ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 646 (775)
++-.+++.+.|.+.+.+-+..| +.-+-.++.++.+-.+.|++.+|...+.++.----+. ..++.+ .-.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~c------P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~-~~lwle-----~Ir 761 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKC------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN-ALLWLE-----SIR 761 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccC------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc-chhHHH-----HHH
Confidence 9999999999988887766544 3346678888999999999999999888775332111 111111 223
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH------------------------HHHHHhhhcCCCCCCCCCh
Q 004081 647 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF------------------------IAEAKCLLSDPSFSVSQNP 702 (775)
Q Consensus 647 l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~------------------------~~LAr~~lA~~~~~~~g~~ 702 (775)
+-+..|.. ++|..++-.+|.-+-..|-.+.++.-+ ...|+.... ....
T Consensus 762 ~ElR~gn~--~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~------e~k~ 833 (913)
T KOG0495|consen 762 MELRAGNK--EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS------EKKI 833 (913)
T ss_pred HHHHcCCH--HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH------HHHH
Confidence 34567777 888888888887777777777666533 222333333 4446
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004081 703 EAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 754 (775)
Q Consensus 703 ~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~q 754 (775)
++|++++.+|+..-...| ++....=..+...|..+...+....|.+
T Consensus 834 ~kar~Wf~Ravk~d~d~G------D~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNG------DAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHccCCccc------hHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 778888888876554444 3444555566777877777775444443
No 136
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.065 Score=61.45 Aligned_cols=232 Identities=13% Similarity=-0.036 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHH
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 559 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~ 559 (775)
...|..+.+.|+..+|.-.++.+...-|.. ...|.. |++ .+-..++-..|...+.+.+.| ||. -.+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h--aeAW~~-LG~---~qaENE~E~~ai~AL~rcl~L-------dP~-Nle 354 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH--AEAWQK-LGI---TQAENENEQNAISALRRCLEL-------DPT-NLE 354 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH--HHHHHH-hhh---HhhhccchHHHHHHHHHHHhc-------CCc-cHH
Confidence 345556778888888888888777554421 123332 333 566677777888888888887 333 467
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhh---------cccc----------------------------hhHHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYK---------FNLQ----------------------------VENASVLL 602 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~---------~gd~----------------------------~~~a~aLl 602 (775)
++..++.-+.-.|.-.+|++++..-+..--. .++. ..-..++.
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQS 434 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh
Confidence 7888888888888888888888777543200 0000 02245688
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHH
Q 004081 603 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 682 (775)
Q Consensus 603 ~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a 682 (775)
.||.+|.-.|++++|+..+..||..--. -.....+||.++.--.+. ++|+..+++||.+- .-+. |+
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s--~EAIsAY~rALqLq----P~yV--R~ 500 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRS--EEAISAYNRALQLQ----PGYV--RV 500 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCccc--HHHHHHHHHHHhcC----CCee--ee
Confidence 8999999999999999999999876421 134456677776544455 99999999998764 2233 45
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHHhcCCHHHH
Q 004081 683 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAA----EAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 683 ~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~----evl~~LA~l~~~lGd~~~A 745 (775)
.+.||-+++. .|.+.+|+.+|-.|+.+-++-....+.+ .+...|-.+.-..+..+..
T Consensus 501 RyNlgIS~mN------lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 501 RYNLGISCMN------LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ehhhhhhhhh------hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6788888898 9999999999999999988733333332 3333333555555655543
No 137
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.029 Score=64.24 Aligned_cols=207 Identities=13% Similarity=0.059 Sum_probs=135.3
Q ss_pred HHHHHHHhCcHHHHH---HHH-HHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH
Q 004081 442 RATAWEAYGSAPLTR---VNT-LIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 517 (775)
Q Consensus 442 ~aalW~~~G~~~La~---l~~-~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l 517 (775)
.+..|..+|..+--. ..+ ..+.+|..=.. +-..++-.||..+.-+|-=.+|+..|..-...-|..........
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP---~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDP---TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC---ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 356788888875442 111 22345654444 44677888888888888888888888865543222111100000
Q ss_pred HHhhHHH-HHHhcCCHHHHHHHHHHHhhhhhcCCC-CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccch
Q 004081 518 KLQLLHE-RSLHRGHLKLAQKVCDELGVMASSVTG-VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV 595 (775)
Q Consensus 518 ~l~l~~~-~al~~G~~~~A~~~l~~ll~L~~~~~~-~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~ 595 (775)
.....-. --.....+..-.+++-.+. +..+. .| .++...++.++.-.|+|+.|+++++.+|. ..+
T Consensus 395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa---~~~~~~~D----pdvQ~~LGVLy~ls~efdraiDcf~~AL~------v~P 461 (579)
T KOG1125|consen 395 NEDFENTKSFLDSSHLAHIQELFLEAA---RQLPTKID----PDVQSGLGVLYNLSGEFDRAVDCFEAALQ------VKP 461 (579)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHHHH---HhCCCCCC----hhHHhhhHHHHhcchHHHHHHHHHHHHHh------cCC
Confidence 0000000 0000001111122222222 22221 34 34678889999999999999999999995 566
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 596 ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 596 ~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
.....+..+|-.+....+.++|+..+.+||.|-- .-.+++.+||-.+..+|.. ++|..+|-++|.+...
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP------~yVR~RyNlgIS~mNlG~y--kEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQP------GYVRVRYNLGISCMNLGAY--KEAVKHLLEALSMQRK 530 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC------CeeeeehhhhhhhhhhhhH--HHHHHHHHHHHHhhhc
Confidence 6788999999999999999999999999999853 2347778899999899997 9999999999998866
No 138
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.092 Score=55.84 Aligned_cols=115 Identities=17% Similarity=0.049 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 676 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~ 676 (775)
.+.+++..|-+..+.|+++.|+.-+..|+... |...+.|. .+|-.+.+-|+. ..|+++.-+++..-.....-
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---GyqpllAY---niALaHy~~~qy--asALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQPLLAY---NLALAHYSSRQY--ASALKHISEIIERGIRQHPE 214 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhc---CCCchhHH---HHHHHHHhhhhH--HHHHHHHHHHHHhhhhcCCc
Confidence 45566666666666677766666666666543 33333333 244445555655 66666666665443222111
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 677 ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH-----ELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 677 ~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~-----~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
...+.. ..+.| .+.++.+ ...-+++.+++.++-..|+.+.|.+
T Consensus 215 lgIGm~--------tegiD--------------------vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 215 LGIGMT--------TEGID--------------------VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred cCccce--------eccCc--------------------hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 110000 00000 2223332 2445677888888989998888776
No 139
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.85 E-value=0.4 Score=60.11 Aligned_cols=242 Identities=14% Similarity=0.102 Sum_probs=179.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH--hhhcC-chHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEK--FLSVS-KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~--f~~~~-~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..+.-.++...++.+.|..+.++|+.. |++.. .-.+|+.-+.+ ...-|.-+...+.++++-.+. |
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl----En~yG~eesl~kVFeRAcqyc------d-- 1528 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL----ENAYGTEESLKKVFERACQYC------D-- 1528 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH----HHhhCcHHHHHHHHHHHHHhc------c--
Confidence 334444556789999999999999984 33221 12367765533 445677888889999988763 4
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...+...+..+|...+.+++|-+++++++..++ ....+++..|...++..+.++|...+.+||.-.-+ .
T Consensus 1529 -~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~ 1597 (1710)
T KOG1070|consen 1529 -AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----Q 1597 (1710)
T ss_pred -hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----h
Confidence 456788889999999999999999999998544 34678899999999999999999999999988754 2
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
.....+--.|.+....|++ ++++.+|+..+...-..- -.++.+.++-+. .|+...+++.++++.
T Consensus 1598 eHv~~IskfAqLEFk~GDa--eRGRtlfEgll~ayPKRt------DlW~VYid~eik------~~~~~~vR~lfeRvi-- 1661 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDA--ERGRTLFEGLLSAYPKRT------DLWSVYIDMEIK------HGDIKYVRDLFERVI-- 1661 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCc--hhhHHHHHHHHhhCccch------hHHHHHHHHHHc------cCCHHHHHHHHHHHH--
Confidence 3345566688888999999 999999999876653222 356667777777 788888888888886
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhhcc
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKL-GRLAEREEAAALFKEYVLALEN 761 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~l-Gd~~~A~~aAa~f~ql~~~~~~ 761 (775)
.+....+.+.-++.+=.-|... ||-...+..-+...+++....+
T Consensus 1662 --~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s 1706 (1710)
T KOG1070|consen 1662 --ELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKS 1706 (1710)
T ss_pred --hcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhh
Confidence 4567777777777777666654 7766665555555566665553
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.82 E-value=0.0032 Score=52.62 Aligned_cols=96 Identities=22% Similarity=0.180 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHH
Q 004081 600 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR 679 (775)
Q Consensus 600 aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~ 679 (775)
++..+|.++...|++..|+..+.+++...... ..+...+|.++...|.. ++|.+.++.++.......
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~----- 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------ADAYYNLAAAYYKLGKY--EEALEDYEKALELDPDNA----- 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCCCcch-----
Confidence 56788999999999999999999988775422 15677899999999998 999999999887653332
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 680 ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 680 A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
.++..+|.++.. .|++..|..+++++...
T Consensus 69 -~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 69 -KAYYNLGLAYYK------LGKYEEALEAYEKALEL 97 (100)
T ss_pred -hHHHHHHHHHHH------HHhHHHHHHHHHHHHcc
Confidence 577888888888 88899999988887653
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.009 Score=63.57 Aligned_cols=100 Identities=20% Similarity=0.115 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.++-+-..+.=++..++|.+|+..+++++. .....+..+.++|.+|.++|+++.|+..+..|+.+-- -
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp------~ 147 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIE------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP------H 147 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh------H
Confidence 456666778888999999999999999996 3455677899999999999999999999999988753 3
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
..++..+||.++..+|+. ++|.+.|..+|.+=
T Consensus 148 yskay~RLG~A~~~~gk~--~~A~~aykKaLeld 179 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKY--EEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHHHHHHccCcH--HHHHHHHHhhhccC
Confidence 357788899999999998 99999999998764
No 142
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.77 E-value=0.022 Score=59.61 Aligned_cols=123 Identities=17% Similarity=0.073 Sum_probs=98.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.....|+-+.+.....++.-. .+.|+ +++...+...++.|+|.+|+..++++.. ..+...++++.+
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~----~~~d~----~ll~~~gk~~~~~g~~~~A~~~~rkA~~------l~p~d~~~~~~l 140 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIA----YPKDR----ELLAAQGKNQIRNGNFGEAVSVLRKAAR------LAPTDWEAWNLL 140 (257)
T ss_pred HHHhcccccchHHHHhhhhcc----CcccH----HHHHHHHHHHHHhcchHHHHHHHHHHhc------cCCCChhhhhHH
Confidence 456677777777777775442 22242 3444489999999999999999999986 445668899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
|-++.+.|+.+.|...+.+|+++.- ....+..+||..+.--|+. +.|..++.++.-.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~------~~p~~~nNlgms~~L~gd~--~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAP------NEPSIANNLGMSLLLRGDL--EDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhcc------CCchhhhhHHHHHHHcCCH--HHHHHHHHHHHhC
Confidence 9999999999999999999999985 2357888999999999998 9999998877443
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.07 Score=60.76 Aligned_cols=159 Identities=15% Similarity=0.051 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
.+.++.++|..+...++|+.|...++++++..+.-.. .-......++.....+..-+ +|
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~--------------ls~lk~~Ek~~k~~e~~a~~-------~p 355 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL--------------LSKLKEAEKALKEAERKAYI-------NP 355 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH--------------HHHHHHHHHHHHHHHHHHhh-------Ch
Confidence 4556666777888889999999999998877654111 00111122222222222222 33
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
+. ++-....+.-....|||..|++.+.+++. ..+.-++.+.++|-+|+++|.+..|+..+..++++. -.
T Consensus 356 e~-A~e~r~kGne~Fk~gdy~~Av~~YteAIk------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~----p~ 424 (539)
T KOG0548|consen 356 EK-AEEEREKGNEAFKKGDYPEAVKHYTEAIK------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD----PN 424 (539)
T ss_pred hH-HHHHHHHHHHHHhccCHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----ch
Confidence 33 23333446666666666666666666554 124445666666666666666666666666665552 11
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
. ..+.++=|.++..+-+. +.|++.+++++..
T Consensus 425 ~--~kgy~RKg~al~~mk~y--dkAleay~eale~ 455 (539)
T KOG0548|consen 425 F--IKAYLRKGAALRAMKEY--DKALEAYQEALEL 455 (539)
T ss_pred H--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 2 22233335555445444 6666666665443
No 144
>PLN02789 farnesyltranstransferase
Probab=96.72 E-value=0.53 Score=51.81 Aligned_cols=226 Identities=7% Similarity=-0.151 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC-CHHHHHHHHHHHhhhhhcCCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~L~~~~~~ 551 (775)
++...+...+-.++...+++++|+.....+.+.-|..- ..|..+-. .....| ++.++...+++++...+
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y--taW~~R~~----iL~~L~~~l~eeL~~~~~~i~~np---- 103 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNY--TVWHFRRL----CLEALDADLEEELDFAEDVAEDNP---- 103 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHHH----HHHHcchhHHHHHHHHHHHHHHCC----
Confidence 34455555555556778899999999999988766432 24444321 122335 68999999999988532
Q ss_pred CChhhHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 552 VDMDLKTEASLRHARTLLAANQF--SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~--~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
+ -..++..++.++...|+. .++++.+++++. .......++..++.+....|++++++..+.+++++-.
T Consensus 104 -k---nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~------~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 104 -K---NYQIWHHRRWLAEKLGPDAANKELEFTRKILS------LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred -c---chHHhHHHHHHHHHcCchhhHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 1 345688888888888874 678888888875 3345688999999999999999999999999988753
Q ss_pred HhCCcHHHHHHHHHHHHHHHHc---CCC--hHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 004081 630 LLNLDLLKASATLTLAELWLSF---GPN--HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 704 (775)
Q Consensus 630 ~~g~~~~~A~al~~La~l~l~l---G~~--~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~ 704 (775)
.. ..+....+.+...+ |.. ..+++++....++...-...+.+ .-++.++.... ...+...+
T Consensus 174 ~N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW------~Yl~~ll~~~~--~~l~~~~~ 239 (320)
T PLN02789 174 RN------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPW------RYLRGLFKDDK--EALVSDPE 239 (320)
T ss_pred Cc------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHH------HHHHHHHhcCC--cccccchh
Confidence 33 24555555555444 322 12467777777777765555543 33333333311 11244556
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHh
Q 004081 705 VLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK 738 (775)
Q Consensus 705 Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~ 738 (775)
|++...++... . ..-..++..|+.+|..
T Consensus 240 ~~~~~~~~~~~--~----~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 240 VSSVCLEVLSK--D----SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhhcc--c----CCcHHHHHHHHHHHHh
Confidence 77777665541 1 2223467777777765
No 145
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.64 E-value=0.015 Score=54.71 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=80.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
..-..|+++.|.+.+.+++.+.+. .+.++++++..+.-.|+.++|++-+++++++.. +..+..-++...+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~--------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trtacqa~vQR 121 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE--------RASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRTACQAFVQR 121 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc--------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchHHHHHHHHH
Confidence 345679999999999999998663 567899999999999999999999999998754 2345556789999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
|.+|...|+-+.|...+..|..+..
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCC
Confidence 9999999999999999988876643
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.01 Score=63.10 Aligned_cols=91 Identities=10% Similarity=-0.003 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..++|.+|...+.+++.+- +.| +..+.+++.+|..+|.|+.|++-++.++.+ .....+++.+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~----P~n----AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~R 154 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD----PTN----AVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGR 154 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC----CCc----chHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHH
Confidence 47899999999999999999972 223 345778999999999999999999999873 3344788999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+|.+|...|+++.|+..+.+||++-
T Consensus 155 LG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 155 LGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHccCcHHHHHHHHHhhhccC
Confidence 9999999999999999999999885
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.61 E-value=0.097 Score=64.30 Aligned_cols=216 Identities=13% Similarity=0.003 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC--
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG-- 551 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~-- 551 (775)
+...+...|+..+-..|++++|.++++.+.+.+|....-. .-+++ .++..+++.++... .++..++.-..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~y---y~~G~---l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISAL---YISGI---LSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehH---HHHHH---HHHhhcchhhhhhh--hhhhhcccccchh
Confidence 4567888899988899999999999998888887543321 11111 34455555555443 44443221100
Q ss_pred ---------CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHH
Q 004081 552 ---------VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 622 (775)
Q Consensus 552 ---------~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~ 622 (775)
.|....-.+++.+|.++-.+|++++|...+++++.. .+..+.++.++|..+... +.++|+.++.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 011112368899999999999999999999999972 277899999999999999 9999999999
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCCh
Q 004081 623 ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP 702 (775)
Q Consensus 623 ~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~ 702 (775)
+|+...-.... ...+=++|..+-... ..=.+.|-.++..+...-....-+..+.-+=.+|.. .+++
T Consensus 174 KAV~~~i~~kq-------~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~------~~~~ 239 (906)
T PRK14720 174 KAIYRFIKKKQ-------YVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA------LEDW 239 (906)
T ss_pred HHHHHHHhhhc-------chHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh------hhhh
Confidence 99888533221 111223333322210 112223334444444442222333344455577777 8889
Q ss_pred HHHHHHHHHHHHHHHh
Q 004081 703 EAVLDPLRQASEELQV 718 (775)
Q Consensus 703 ~~Al~~L~~Al~~f~~ 718 (775)
.+++..|..+++.-.+
T Consensus 240 ~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 240 DEVIYILKKILEHDNK 255 (906)
T ss_pred hHHHHHHHHHHhcCCc
Confidence 9999999999987654
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.50 E-value=0.011 Score=63.90 Aligned_cols=223 Identities=18% Similarity=0.177 Sum_probs=131.6
Q ss_pred CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHH-HhhHHHHHHhc-CCHHHHHHHHHHHhhhhhc
Q 004081 471 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK-LQLLHERSLHR-GHLKLAQKVCDELGVMASS 548 (775)
Q Consensus 471 ~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~-l~l~~~~al~~-G~~~~A~~~l~~ll~L~~~ 548 (775)
+.+.......-+++.+..+|.|+.++.-+.. ........++ +. .++.. ++-..+ +..+..+...
T Consensus 30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~~~~l~av~~la----~y~~~~~~~e~~---l~~l~~~~~~ 95 (290)
T PF04733_consen 30 SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SSSPELQAVRLLA----EYLSSPSDKESA---LEELKELLAD 95 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TSSCCCHHHHHHH----HHHCTSTTHHCH---HHHHHHCCCT
T ss_pred CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CCChhHHHHHHHH----HHHhCccchHHH---HHHHHHHHHh
Confidence 3444455556667777788988876544421 1111111111 11 12222 233333 3344333221
Q ss_pred CCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 549 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 549 ~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
.. +. .-..+....|.++...|++++|++.+.+. ....+..+.-+|+++.||++.|...+...-
T Consensus 96 ~~--~~-~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~--- 158 (290)
T PF04733_consen 96 QA--GE-SNEIVQLLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNMQ--- 158 (290)
T ss_dssp S------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---
T ss_pred cc--cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---
Confidence 11 10 11234566677778889999999888542 335666677888999999999987775543
Q ss_pred HHhCCcHHHHHHHHHHHHHH--HHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004081 629 QLLNLDLLKASATLTLAELW--LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 706 (775)
Q Consensus 629 ~~~g~~~~~A~al~~La~l~--l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al 706 (775)
+...+ .++..|++.| +..|...+++|...+++..... |. ....++.+|.|++. .|++++|.
T Consensus 159 -~~~eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~---~~---t~~~lng~A~~~l~------~~~~~eAe 221 (290)
T PF04733_consen 159 -QIDED----SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF---GS---TPKLLNGLAVCHLQ------LGHYEEAE 221 (290)
T ss_dssp -CCSCC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHH------CT-HHHHH
T ss_pred -hcCCc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc---CC---CHHHHHHHHHHHHH------hCCHHHHH
Confidence 33444 3344466655 4467544589999999964432 22 34668888999999 99999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCH-HHHHH
Q 004081 707 DPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL-AEREE 747 (775)
Q Consensus 707 ~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~-~~A~~ 747 (775)
+.|.+|++ ....-.+++..++.+...+|+. +..++
T Consensus 222 ~~L~~al~------~~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 222 ELLEEALE------KDPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp HHHHHHCC------C-CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHH------hccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 99999864 2234567899999999999988 33444
No 149
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.40 E-value=0.3 Score=48.96 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
-.++++..+...|++.||..++++++. |.--+...+++.+|+.....|++..|...+..-.+ ++-......
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r~pd 161 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFRSPD 161 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh----cCCccCCCC
Confidence 467889999999999999999999997 88788889999999999999999999888765433 333344455
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 709 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L 709 (775)
..+.+|.++...|.+ .+|...++.++.-. .+...+++. +..+.+ .|+.+++..-+
T Consensus 162 ~~Ll~aR~laa~g~~--a~Aesafe~a~~~y---pg~~ar~~Y----~e~La~------qgr~~ea~aq~ 216 (251)
T COG4700 162 GHLLFARTLAAQGKY--ADAESAFEVAISYY---PGPQARIYY----AEMLAK------QGRLREANAQY 216 (251)
T ss_pred chHHHHHHHHhcCCc--hhHHHHHHHHHHhC---CCHHHHHHH----HHHHHH------hcchhHHHHHH
Confidence 667799999999999 88999888887654 454444333 344444 56555544433
No 150
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.94 Score=49.30 Aligned_cols=198 Identities=11% Similarity=0.020 Sum_probs=140.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR-TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLL 602 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~-ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl 602 (775)
..+...|++.+-..++.++......++ -+.. +....-+.+ .+.--+.++.-++++...++.+.+......+-....
T Consensus 56 ~ll~~~~~~~~lr~li~~~Rpf~~~v~--Kaka-aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lea 132 (411)
T KOG1463|consen 56 DLLAKEGDAEELRDLITSLRPFLSSVS--KAKA-AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEA 132 (411)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHhh--hHHH-HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 566777777777777777777665544 2111 111112222 222334555677777777777776666666666777
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH-HhcCCHHHHHH
Q 004081 603 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI-LGHGGLELRAR 681 (775)
Q Consensus 603 ~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i-l~~G~~~l~A~ 681 (775)
.+..+|...++|..|+.....-+.--.+..+......+.+.=..++..+... .+|..-|..+-... -..-.+.++|.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl--~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNL--PKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcc--hhHHHHHHHHHHhhcccccCHHHHHH
Confidence 8889999999999999999888888888888888888877778888888777 78887777763332 22346677777
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 004081 682 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLI 732 (775)
Q Consensus 682 a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~L 732 (775)
.-..=|-.|.+ ..++-.|-.|+=+|++.|..++++...+.++..+
T Consensus 211 lDLqSGIlha~------ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYM 255 (411)
T KOG1463|consen 211 LDLQSGILHAA------EKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYM 255 (411)
T ss_pred HHHhccceeec------ccccchHHHHHHHHHccccccCCcHHHHHHHHHH
Confidence 76666666666 5677789999999999999999987777776544
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.38 E-value=0.044 Score=67.23 Aligned_cols=154 Identities=12% Similarity=-0.015 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-------
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ------- 629 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~------- 629 (775)
...++..++..+...|++++|...++..++ .....++++..+|.++.+.+++..+... .++.+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 678899999999999999999999998775 4566788999999999999998777544 4444433
Q ss_pred ------HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChH
Q 004081 630 ------LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPE 703 (775)
Q Consensus 630 ------~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~ 703 (775)
..++-+..-.|+..||.+|-.+|.. ++|...+++++..= ..-+.++..+|..+.- . +++
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~--~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae------~-dL~ 166 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNEN--KKLKGVWERLVKAD------RDNPEIVKKLATSYEE------E-DKE 166 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcC------cccHHHHHHHHHHHHH------h-hHH
Confidence 3334344446999999999999999 99999999998774 4567889999998888 6 999
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 004081 704 AVLDPLRQASEELQVLEDHELAAEAFYLIA 733 (775)
Q Consensus 704 ~Al~~L~~Al~~f~~l~~~~~~~evl~~LA 733 (775)
+|+.++.+|+..|-.-.......+....+-
T Consensus 167 KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 167 KAITYLKKAIYRFIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 999999999998887776666666555444
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.37 E-value=0.25 Score=59.96 Aligned_cols=246 Identities=14% Similarity=0.019 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH
Q 004081 438 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 517 (775)
Q Consensus 438 ~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l 517 (775)
...+...-|-.+|+..=....++-++..-.+ -....+.+++.||..+..--+-..|..-++.|.++-+ ++...|.-
T Consensus 456 ~~~e~~~~w~a~~~~rK~~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa 531 (1238)
T KOG1127|consen 456 LECENSEFWVALGCMRKNSALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAA 531 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHH
Confidence 3444556677777654443332111110001 1224578888888887655555556665555443321 11111221
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhH
Q 004081 518 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN 597 (775)
Q Consensus 518 ~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~ 597 (775)
.. +.+....+|++|..++.+...-++ ....-..+..++-++...+++..|+..++.+++. .+--
T Consensus 532 ~a----dtyae~~~we~a~~I~l~~~qka~------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~------dPkD 595 (1238)
T KOG1127|consen 532 SA----DTYAEESTWEEAFEICLRAAQKAP------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT------DPKD 595 (1238)
T ss_pred HH----HHhhccccHHHHHHHHHHHhhhch------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC------Cchh
Confidence 11 567788999999999666555322 1123455667999999999999999999999862 2334
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHH
Q 004081 598 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 677 (775)
Q Consensus 598 a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~ 677 (775)
.+++..+|++|.++|++..|+..+.+|..+- .....++.-.+-+.+.+|.. .+|++.+..++-.. .
T Consensus 596 ~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr------P~s~y~~fk~A~~ecd~GkY--keald~l~~ii~~~------s 661 (1238)
T KOG1127|consen 596 YNLWLGLGEAYPESGRYSHALKVFTKASLLR------PLSKYGRFKEAVMECDNGKY--KEALDALGLIIYAF------S 661 (1238)
T ss_pred HHHHHHHHHHHHhcCceehHHHhhhhhHhcC------cHhHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH------H
Confidence 7789999999999999999999998876653 23456677788899999998 99999998886553 1
Q ss_pred HHHHHHHHHHHhhhcCCCC-CCCCChHHHHHHHHHHHHHHH
Q 004081 678 LRARAFIAEAKCLLSDPSF-SVSQNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 678 l~A~a~~~LAr~~lA~~~~-~~~g~~~~Al~~L~~Al~~f~ 717 (775)
..-.+...||.|++.++.. -..|-.-+|.++++.+.+.|.
T Consensus 662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2233455566555553221 115556678888888887775
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.36 E-value=0.056 Score=60.98 Aligned_cols=140 Identities=19% Similarity=0.125 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
...+.+..+......|.+++|+..++.++. ....+...+-..++|+.+.|++.+|.+.+.+++.+--. .
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-----~ 373 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA------AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-----S 373 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----c
Confidence 567889999999999999999999999764 56678889999999999999999999999999887431 1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCC-----------CCCCCChHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS-----------FSVSQNPEAV 705 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~-----------~~~~g~~~~A 705 (775)
.-....+|.+++..|.+ ++|...++..+-..-+.. ..|..||+++-...+ ....|++++|
T Consensus 374 -~~l~~~~a~all~~g~~--~eai~~L~~~~~~~p~dp------~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A 444 (484)
T COG4783 374 -PLLQLNLAQALLKGGKP--QEAIRILNRYLFNDPEDP------NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQA 444 (484)
T ss_pred -cHHHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCCCc------hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHH
Confidence 34456799999999999 999999988765543332 244444444444100 0125666666
Q ss_pred HHHHHHHHHHH
Q 004081 706 LDPLRQASEEL 716 (775)
Q Consensus 706 l~~L~~Al~~f 716 (775)
+.++..|.+..
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 66666666544
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.34 E-value=0.75 Score=48.44 Aligned_cols=174 Identities=16% Similarity=0.039 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
-...+.+-|......|+|++|...++.+..++|-....+-..+-+. ..+...|+|++|...+++-..+++....
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~---yA~Yk~~~y~~A~~~~drFi~lyP~~~n--- 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLA---YAYYKNGEYDLALAYIDRFIRLYPTHPN--- 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHH---HHHHhcccHHHHHHHHHHHHHhCCCCCC---
Confidence 4567788888889999999999999999988876655554444433 3678999999999999999999987663
Q ss_pred hhHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHhhcccchhH--------------HHHHHHHHHHHHhcCChh
Q 004081 555 DLKTEASLRHARTLL-----AANQFSEAAAVAHSLFCMCYKFNLQVEN--------------ASVLLLLAEIHKKSGNAV 615 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~-----~~Gd~~eAl~~l~~aL~~~~~~gd~~~~--------------a~aLl~lA~i~~~~G~~~ 615 (775)
...+.+.++..+. ...|...+.+.+...-....+....+-. +.--+..|..|.+.|.+.
T Consensus 107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 4466666666653 3456666666665555555544433222 222677889999999999
Q ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 004081 616 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASN 661 (775)
Q Consensus 616 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~ 661 (775)
.|...+.+.++- .-.....-.++-.|.+.+.++|.. ++|-.
T Consensus 185 AA~nR~~~v~e~---y~~t~~~~eaL~~l~eaY~~lgl~--~~a~~ 225 (254)
T COG4105 185 AAINRFEEVLEN---YPDTSAVREALARLEEAYYALGLT--DEAKK 225 (254)
T ss_pred HHHHHHHHHHhc---cccccchHHHHHHHHHHHHHhCCh--HHHHH
Confidence 998888777665 334445556777788889999987 55543
No 155
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.31 E-value=0.26 Score=57.61 Aligned_cols=149 Identities=11% Similarity=-0.027 Sum_probs=110.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
.|.....+++.++..+-..|++++|++.+++++. ..+.....++.+|.|+-+.|++..|...+..|-.+ ...
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~ 260 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLA 260 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--Chh
Confidence 3445567889999999999999999999999996 34555889999999999999999999887665544 233
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH-HhcCCHHHHHHHHH--HHHHhhhcCCCCCCCCChHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI-LGHGGLELRARAFI--AEAKCLLSDPSFSVSQNPEAVLDPL 709 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i-l~~G~~~l~A~a~~--~LAr~~lA~~~~~~~g~~~~Al~~L 709 (775)
++++-.. .+..+++-|.. ++|...+---.-.- -...+...--+.++ -.|+++.. .|++..|+..+
T Consensus 261 DRyiNsK----~aKy~LRa~~~--e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r------~~~~~~ALk~~ 328 (517)
T PF12569_consen 261 DRYINSK----CAKYLLRAGRI--EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR------QGDYGLALKRF 328 (517)
T ss_pred hHHHHHH----HHHHHHHCCCH--HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHH
Confidence 4444333 56777888987 88888654331110 11234444444554 44688888 89999999999
Q ss_pred HHHHHHHHhccC
Q 004081 710 RQASEELQVLED 721 (775)
Q Consensus 710 ~~Al~~f~~l~~ 721 (775)
......|..+.+
T Consensus 329 ~~v~k~f~~~~~ 340 (517)
T PF12569_consen 329 HAVLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHHHhc
Confidence 999999987754
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.29 E-value=0.062 Score=60.53 Aligned_cols=117 Identities=19% Similarity=0.108 Sum_probs=91.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHH
Q 004081 483 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 562 (775)
Q Consensus 483 A~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~ 562 (775)
-..+...++|+.|..++++..+..|+ . ...+. +.++..++-.+|.+++.+++...+ .| .+.+.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe-----v-~~~LA---~v~l~~~~E~~AI~ll~~aL~~~p----~d----~~LL~ 238 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE-----V-AVLLA---RVYLLMNEEVEAIRLLNEALKENP----QD----SELLN 238 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc-----H-HHHHH---HHHHhcCcHHHHHHHHHHHHHhCC----CC----HHHHH
Confidence 34445678999999999998877653 1 11111 356678889999999999986422 12 67788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 622 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~ 622 (775)
..+..++..|+++.|++.++++.. ..+..++.+..||.+|...|+++.|+-.+.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVE------LSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH------hCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999999885 456779999999999999999999985543
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.28 E-value=0.06 Score=60.64 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=98.5
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
....++++.|..+++++..- ||+ +...++.+++..++..+|++.+++++.. .......|...|
T Consensus 179 l~~t~~~~~ai~lle~L~~~-------~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Qa 241 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRER-------DPE----VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQA 241 (395)
T ss_pred HhhcccHHHHHHHHHHHHhc-------CCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHHH
Confidence 34468999999999998873 443 5566899999999999999999999952 222388899999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 606 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 606 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
..+...|+++.|+..+.+|..++- ..-.+...|+.+|..+|+. +.|+..++ ++|..
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~~Yi~~~d~--e~ALlaLN-s~Pm~ 297 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSP------SEFETWYQLAECYIQLGDF--ENALLALN-SCPML 297 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhcCCH--HHHHHHHh-cCcCC
Confidence 999999999999999999999884 2346778899999999998 99998888 55766
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=96.28 E-value=0.055 Score=53.29 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...+..+..|.-....|++++|...++-+.. ...+..+.++.+|.++...++++.|+..+..|..+.. +++
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp- 105 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCI------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDY- 105 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCC-
Confidence 3678899999999999999999999955432 3355677899999999999999999999998888764 333
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE 686 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~L 686 (775)
....+.|..++.+|+. ..|+..|+.++.. ..+..++.+|...|
T Consensus 106 ---~p~f~agqC~l~l~~~--~~A~~~f~~a~~~---~~~~~l~~~A~~~L 148 (165)
T PRK15331 106 ---RPVFFTGQCQLLMRKA--AKARQCFELVNER---TEDESLRAKALVYL 148 (165)
T ss_pred ---CccchHHHHHHHhCCH--HHHHHHHHHHHhC---cchHHHHHHHHHHH
Confidence 2367799999999999 9999999999884 45666666665555
No 159
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.25 E-value=1.7 Score=52.11 Aligned_cols=203 Identities=13% Similarity=0.023 Sum_probs=120.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHH----HHHhhcccchhHHH-
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLF----CMCYKFNLQVENAS- 599 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL----~~~~~~gd~~~~a~- 599 (775)
.+-..|.|.+|.++.+.- |+-..-..+++.+..+-++||.+.|++.++++- +..+-..+.+..+.
T Consensus 835 lyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred HHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 456789999998755431 444455678999999999999999999998652 22222222222221
Q ss_pred ---------HHHHHHHHHHhcCChhhHHHHHH-------------------HHHHHHHHhCCcHHHHHHHHHHHHHHHHc
Q 004081 600 ---------VLLLLAEIHKKSGNAVLGIPYAL-------------------ASLSFCQLLNLDLLKASATLTLAELWLSF 651 (775)
Q Consensus 600 ---------aLl~lA~i~~~~G~~~~Al~~l~-------------------~AL~la~~~g~~~~~A~al~~La~l~l~l 651 (775)
.+.--|+-....|+.+.|+.++. +|-.+|++.|+. .|-.+||..|...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~----AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDK----AACYHLARMYEND 980 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccH----HHHHHHHHHhhhh
Confidence 24445667778899999988775 677888888875 3445699999988
Q ss_pred CCChHHHHHHHHHHH------HhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH-------HHHHHHHHh
Q 004081 652 GPNHAKMASNLIQQA------LPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL-------RQASEELQV 718 (775)
Q Consensus 652 G~~~f~~Al~lLe~a------Lp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L-------~~Al~~f~~ 718 (775)
|+- .+|...+.++ +.++.+++-...-+. || .++. ..+...|..|+ .+|..+|-+
T Consensus 981 g~v--~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n----la--l~s~-----~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 981 GDV--VKAVKFFTRAQAFSNAIRLCKENDMKDRLAN----LA--LMSG-----GSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH----HH--hhcC-----chhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 886 6776665544 556655543322221 11 1110 12222222222 244444444
Q ss_pred ccCHH---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004081 719 LEDHE---------LAAEAFYLIAIVFDKLGRLAEREEAAALFKE 754 (775)
Q Consensus 719 l~~~~---------~~~evl~~LA~l~~~lGd~~~A~~aAa~f~q 754 (775)
.|... .+-.++-++|.=....-|+..=++|+.-|..
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~ 1092 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN 1092 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 44333 2334555566655666677776666655543
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.25 E-value=0.051 Score=58.00 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=77.8
Q ss_pred HhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 004081 527 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 606 (775)
Q Consensus 527 l~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~ 606 (775)
+..|+|++|...+...+..++ +..-...+++.+|.++...|+|++|+..++.++.. ..+......++..+|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP-----~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~---yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYP-----DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN---YPKSPKAADAMFKVGV 225 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCc-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCcchhHHHHHHHH
Confidence 456899999999999988765 22234678999999999999999999999988863 3455677889999999
Q ss_pred HHHhcCChhhHHHHHHHHHHHH
Q 004081 607 IHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 607 i~~~~G~~~~Al~~l~~AL~la 628 (775)
++...|++..|...+.+.+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999998776543
No 161
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.65 Score=50.47 Aligned_cols=212 Identities=15% Similarity=0.034 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHH-hcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSL-HRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al-~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
....+++..++..|++++=..+++...+-+...+..+...+--.+. +... .-+....-..++.....-+.+-. ..-
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lv-d~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtF 125 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLV-DMFLKIDDGTGDQIELCTECIEWAKREK--RTF 125 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHccCCCCcchHHHHHHHHHHHHHHHh--HHH
Confidence 4567889999999999998888888888777776655322210000 1111 11222233333333333222111 223
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
.+.....+++.++...++|.+|+.++..++...++..|...-+.+.+.-.-+|....+..+|..-+..|-..+.....+.
T Consensus 126 LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP 205 (411)
T KOG1463|consen 126 LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP 205 (411)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH
Confidence 34456678899999999999999999999999999999998899999999999999999999888877777775555544
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH--HHHHHHHHHHHHhhhc
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL--ELRARAFIAEAKCLLS 692 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~--~l~A~a~~~LAr~~lA 692 (775)
..--.+-....++..-.+ .|.-|...|-++.+-.-..++. ...+.=|++|.+..+.
T Consensus 206 qlQa~lDLqSGIlha~ek-DykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln 263 (411)
T KOG1463|consen 206 QLQATLDLQSGILHAAEK-DYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN 263 (411)
T ss_pred HHHHHHHHhccceeeccc-ccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc
Confidence 433333334444433333 3588999999999888777773 3334447777776665
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.21 E-value=0.069 Score=57.04 Aligned_cols=104 Identities=11% Similarity=-0.013 Sum_probs=79.5
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 477 LAHVKLIQHL-AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 477 ~al~~LA~~l-a~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
......|..+ ...|+|++|...|+...+.+|...........++ ..++..|+|.+|...+..+...++ |..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG---~~y~~~g~~~~A~~~f~~vv~~yP-----~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLG---QLNYNKGKKDDAAYYFASVVKNYP-----KSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHCC-----CCc
Confidence 3445555555 4579999999999999999987653221122222 367889999999999999998765 323
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 588 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~ 588 (775)
-...+++.++.++...|++++|.+.+++++...
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 367889999999999999999999999888743
No 163
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.19 E-value=1.1 Score=52.46 Aligned_cols=241 Identities=14% Similarity=0.045 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
++..-+.-....+.|...+..++..++.||+++++- .+-.+ ..--.|+-.+|...++..+.. |+. .
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgesl-AmkGL-----~L~~lg~~~ea~~~vr~glr~-------d~~-S 74 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESL-AMKGL-----TLNCLGKKEEAYELVRLGLRN-------DLK-S 74 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhH-Hhccc-----hhhcccchHHHHHHHHHHhcc-------Ccc-c
Confidence 455556666678999999999999999999988853 11112 334579999999998887662 321 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
..++.-.|.+...-.+|++|++++..++. ....+..++.-++.+..+.|+++..+..=.+-|.+--..
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~------~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~------ 142 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALK------IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ------ 142 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh------
Confidence 46788889999999999999999999996 345567788888888888888876654433334333211
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHH--HhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA--KCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LA--r~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
-.....+|-.+.-+|.. ..|..++++-.-......+.....+.-..|= ..+.. .|.+.+|++.+..=...
T Consensus 143 ra~w~~~Avs~~L~g~y--~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E------~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEY--KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE------AGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH------cccHHHHHHHHHhhhhH
Confidence 12334455566667777 8899988888777655555555555444443 23333 56667777766644322
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhcc
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 761 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~~ 761 (775)
+ -+... ..-..|.++..+|.+++|.. .|+.+..+.+|
T Consensus 215 i---~Dkla---~~e~ka~l~~kl~~lEeA~~---~y~~Ll~rnPd 251 (700)
T KOG1156|consen 215 I---VDKLA---FEETKADLLMKLGQLEEAVK---VYRRLLERNPD 251 (700)
T ss_pred H---HHHHH---HhhhHHHHHHHHhhHHhHHH---HHHHHHhhCch
Confidence 2 12222 22346777788888888776 66666655543
No 164
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.036 Score=61.32 Aligned_cols=100 Identities=19% Similarity=0.152 Sum_probs=75.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCC-------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVD-------MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN 597 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D-------~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~ 597 (775)
.++.+|+|..|...|+++..........| -.....++++++.+++.+++|.+|+...+.+|+ ....+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe------~~~~N 290 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE------LDPNN 290 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh------cCCCc
Confidence 45556666666666665544332111111 112456788999999999999999999999996 56778
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 598 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 598 a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
..+|.++|+++...|+++.|+..+.+++.+.-.
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998643
No 165
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.33 Score=51.22 Aligned_cols=148 Identities=17% Similarity=0.059 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
..+..-+.+++.-|++++|++.+..... ..+.-+--+|+++..+.+-|...+.+...+..+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~-----------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------- 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN-----------LEAAALNVQILLKMHRFDLAEKELKKMQQIDED-------- 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------
Confidence 4556678888999999999998876322 445555667888999999999888888888864
Q ss_pred HHHHHHHHHHHH--cCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 639 SATLTLAELWLS--FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 639 ~al~~La~l~l~--lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
.++..||..|+. .|-.+.+.|.-++++--.- ..-.-..++..|.|++. .|++++|...|+.|+.-.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~------~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQ------LGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHH------hcCHHHHHHHHHHHHhcc
Confidence 455668988865 4444556777777665221 22233467778899999 999999999999999755
Q ss_pred HhccCHHHHHHHHHHHHHHHHhcCCHH
Q 004081 717 QVLEDHELAAEAFYLIAIVFDKLGRLA 743 (775)
Q Consensus 717 ~~l~~~~~~~evl~~LA~l~~~lGd~~ 743 (775)
-+. .+++..+-..-..+|..+
T Consensus 238 ~~d------petL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 238 AKD------PETLANLIVLALHLGKDA 258 (299)
T ss_pred CCC------HHHHHHHHHHHHHhCCCh
Confidence 433 677888888888888763
No 166
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.11 E-value=3.1 Score=46.28 Aligned_cols=167 Identities=17% Similarity=0.089 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.++.=-++.-...|+|++|...++.+. .+.....+.+..++..+-+.|+...|.++..++...++.+.
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl------~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~------ 188 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAML------DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP------ 188 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHh------cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc------
Confidence 333333555556899999988887554 23333444444333467889999999999999998766432
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH--HHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL--LAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~--lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
.+....-...+..||++.|+++++.....-.-..+.-.+-++-++ ++.-.... ++..|.....+++.+....
T Consensus 189 --WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdl--- 262 (531)
T COG3898 189 --WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDL--- 262 (531)
T ss_pred --hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCcc---
Confidence 233344455689999999999998876543333344444444333 33333333 4778888888888876432
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
+-+-+.-+..+..-|+. .++-.+++.+
T Consensus 263 ---vPaav~AAralf~d~~~--rKg~~ilE~a 289 (531)
T COG3898 263 ---VPAAVVAARALFRDGNL--RKGSKILETA 289 (531)
T ss_pred ---chHHHHHHHHHHhccch--hhhhhHHHHH
Confidence 12223356667777877 8888887776
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.10 E-value=0.04 Score=59.70 Aligned_cols=155 Identities=20% Similarity=0.136 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
...-.|..+...|++++|+.++... +.-....+.. ..++..||.+.|...+..+.... .| .
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~V----qi~L~~~R~dlA~k~l~~~~~~~-----eD---~ 164 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAV----QILLKMNRPDLAEKELKNMQQID-----ED---S 164 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHH----HHHHHTT-HHHHHHHHHHHHCCS-----CC---H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHH----HHHHHcCCHHHHHHHHHHHHhcC-----Cc---H
Confidence 3444566677789999998888642 1112222222 46889999999999998876642 24 4
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 558 TEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 558 ~~a~~~~a~ll~~~G--d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
..+.+..+++.+..| .+.+|.-.++++.. +. ......+..+|.++...|++++|...+.+|+..- .
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------~ 232 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KF---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------P 232 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------C
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------c
Confidence 556677777878888 48999998888543 11 2336778899999999999999999999987532 2
Q ss_pred HHHHHHHHHHHHHHHcCCChHHH-HHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKM-ASNLIQQ 665 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~-Al~lLe~ 665 (775)
....++.++..+...+|.+ .+ +.+++.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~--~~~~~~~l~q 261 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKP--TEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-T--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC--hhHHHHHHHH
Confidence 2356777788888889997 33 3444444
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.09 E-value=0.022 Score=46.85 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=43.3
Q ss_pred HhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 527 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 527 l~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
+..|+|++|..++.+++...+ + -..+.+.++.+++..|++++|.+.+++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-----D---NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-----T---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999988643 1 356788999999999999999999988875
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.00 E-value=0.091 Score=61.48 Aligned_cols=137 Identities=12% Similarity=-0.001 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChh----hHHHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV----LGIPYALASLSFCQ 629 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd---~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~----~Al~~l~~AL~la~ 629 (775)
.+.-++..|.-++..++ +..|+++++++++. .+..+.++-.++.+|.....+. ..+..+.+++..+.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 55667777777776665 77899999988872 2223444444455443332221 22334444444333
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004081 630 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 709 (775)
Q Consensus 630 ~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L 709 (775)
........+.+...+|.+....|++ ++|...+++++.+-. + +.+|..+|+++.. .|++++|++++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~--~~A~~~l~rAl~L~p---s----~~a~~~lG~~~~~------~G~~~eA~~~~ 476 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKT--DEAYQAINKAIDLEM---S----WLNYVLLGKVYEL------KGDNRLAADAY 476 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCC---C----HHHHHHHHHHHHH------cCCHHHHHHHH
Confidence 3222222345566667777778887 999999999988751 2 5699999999999 99999999999
Q ss_pred HHHHH
Q 004081 710 RQASE 714 (775)
Q Consensus 710 ~~Al~ 714 (775)
++|+.
T Consensus 477 ~~A~~ 481 (517)
T PRK10153 477 STAFN 481 (517)
T ss_pred HHHHh
Confidence 99985
No 170
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.4 Score=54.82 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
.+....+||...-..-.+..|++....+.++....+.. ..+. ..++.+|.+.++...+..+...-+. ...|.
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~--~n~a-----A~~~e~~~~~~c~~~c~~a~E~gre-~rad~ 294 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYL--NNIA-----AVYLERGKYAECIELCEKAVEVGRE-LRADY 294 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHH--HHHH-----HHHHhccHHHHhhcchHHHHHHhHH-HHHHH
Confidence 34556778888888888888888888777665211111 1111 3577788888888877775543111 00123
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccc--------------------hhHHHHHHHHHHHHHhcCCh
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ--------------------VENASVLLLLAEIHKKSGNA 614 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~--------------------~~~a~aLl~lA~i~~~~G~~ 614 (775)
-....+..+++..+..+|+++.|+..+.+++...+..... ...+.-....|.-+...|+|
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 3334455567778888899999999999998766641100 00122255667778888888
Q ss_pred hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 004081 615 VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDP 694 (775)
Q Consensus 615 ~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~ 694 (775)
..|+.++.+|+... .--+....+.|-+|+.+|.. ..|+.-.+.++.+ ..-+.+| |+.=|.|+.+
T Consensus 375 ~~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~--~~aL~Da~~~ieL----~p~~~kg--y~RKg~al~~-- 438 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEY--PEALKDAKKCIEL----DPNFIKA--YLRKGAALRA-- 438 (539)
T ss_pred HHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhH--HHHHHHHHHHHhc----CchHHHH--HHHHHHHHHH--
Confidence 88888888876654 22345667778888888887 8888877777666 3434444 3444666666
Q ss_pred CCCCCCChHHHHHHHHHHHHH
Q 004081 695 SFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 695 ~~~~~g~~~~Al~~L~~Al~~ 715 (775)
..++.+|++.+++|++.
T Consensus 439 ----mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 439 ----MKEYDKALEAYQEALEL 455 (539)
T ss_pred ----HHHHHHHHHHHHHHHhc
Confidence 66777777777777654
No 171
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.99 E-value=2.3 Score=51.04 Aligned_cols=150 Identities=13% Similarity=0.035 Sum_probs=98.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.++..|-..+|..+|++-... | ++-.++...|.+++|++..+. .|+..-...+.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~-------D---------LlNKlyQs~g~w~eA~eiAE~--------~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY-------D---------LLNKLYQSQGMWSEAFEIAET--------KDRIHLRNTYYNY 864 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH-------H---------HHHHHHHhcccHHHHHHHHhh--------ccceehhhhHHHH
Confidence 455666677777777665442 2 234567888999999887642 4555555678888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH------------------HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQ------------------LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~------------------~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
|.-+..+++..+|++++.++-..+. +..++ .-..-.|.-+...|+. +.|+..+..+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~----~L~~WWgqYlES~Gem--daAl~~Y~~A 938 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE----SLYSWWGQYLESVGEM--DAALSFYSSA 938 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch----HHHHHHHHHHhcccch--HHHHHHHHHh
Confidence 8888888898899988875432221 11111 1122344555668887 7888777766
Q ss_pred -------------------HhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 667 -------------------LPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 667 -------------------Lp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
-.+..+.||+ .|.+.|||.|-. .|+..+|+.++.+|..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~----AAcYhlaR~YEn------~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDK----AACYHLARMYEN------DGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccH----HHHHHHHHHhhh------hHHHHHHHHHHHHHHH
Confidence 4445566663 256788999988 8888889988887754
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.96 E-value=0.032 Score=45.60 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=48.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 587 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~ 587 (775)
..++..|+|++|...+++++...+ + ...+++.+|.++..+|++++|+..+++++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-----~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-----D---NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-----T---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999999998532 2 6789999999999999999999999998863
No 173
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.89 E-value=0.024 Score=46.85 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhH
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG-PNHAKMASNLIQQALPL 669 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG-~~~f~~Al~lLe~aLp~ 669 (775)
.+.++..+|.++...|++++|+..+.+|+.+.. ..+.+...+|.++..+| ++ ++|+..++.++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------~~~~~~~~~g~~~~~~~~~~--~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------NNAEAYYNLGLAYMKLGKDY--EEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------THHHHHHHHHHHHHHTTTHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHc
Confidence 367899999999999999999999999999853 34678999999999999 56 9999999998754
No 174
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.86 E-value=0.19 Score=58.72 Aligned_cols=154 Identities=20% Similarity=0.106 Sum_probs=114.7
Q ss_pred CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC
Q 004081 471 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 471 ~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~ 550 (775)
+......++.-||+++-..|+|++|+..++.+.+.-|...+- -+++- +..-+.|++.+|.+.++.+..+ +
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el--y~~Ka----rilKh~G~~~~Aa~~~~~Ar~L----D 258 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL--YMTKA----RILKHAGDLKEAAEAMDEAREL----D 258 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH--HHHHH----HHHHHCCCHHHHHHHHHHHHhC----C
Confidence 344567788999999999999999999999999887654332 22222 3577999999999999998776 3
Q ss_pred CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc-cchh------HHHHHHHHHHHHHhcCChhhHHHHHHH
Q 004081 551 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVE------NASVLLLLAEIHKKSGNAVLGIPYALA 623 (775)
Q Consensus 551 ~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g-d~~~------~a~aLl~lA~i~~~~G~~~~Al~~l~~ 623 (775)
..|+- .-..-+.++++.|+.++|.+.+..-.. .+ ++.. -+..+..-|..|.+.|++..|+..+..
T Consensus 259 ~~DRy----iNsK~aKy~LRa~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 259 LADRY----INSKCAKYLLRAGRIEEAEKTASLFTR----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred hhhHH----HHHHHHHHHHHCCCHHHHHHHHHhhcC----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33532 244568888999999999998854432 22 1211 155688999999999999999999999
Q ss_pred HHHHHHHhCCcHHHHHHHH
Q 004081 624 SLSFCQLLNLDLLKASATL 642 (775)
Q Consensus 624 AL~la~~~g~~~~~A~al~ 642 (775)
...+......+-.--+..+
T Consensus 331 v~k~f~~~~~DQfDFH~Yc 349 (517)
T PF12569_consen 331 VLKHFDDFEEDQFDFHSYC 349 (517)
T ss_pred HHHHHHHHhcccccHHHHH
Confidence 9888877766655444443
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.81 E-value=0.66 Score=54.38 Aligned_cols=144 Identities=13% Similarity=0.008 Sum_probs=95.6
Q ss_pred CchHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhc----CCHHHHHHHHHHHh
Q 004081 471 SLSDAALAHVKLIQHLAVFKG---YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR----GHLKLAQKVCDELG 543 (775)
Q Consensus 471 ~~e~~a~al~~LA~~la~~G~---y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~----G~~~~A~~~l~~ll 543 (775)
+.+..+..++-.|..+..+++ +..|.++|++|.++-|.......+. .+.. ..+.... +++..+.+...++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~l-a~~~-~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEK-ALAD-IVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHH-HHHH-HHHHhcCCccHHHHHHHHHHHHHhh
Confidence 444555666666766665555 8899999999999988654433221 1100 0111111 23445555555443
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 004081 544 VMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALA 623 (775)
Q Consensus 544 ~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~ 623 (775)
.+. ..+.+ ..+...++......|++++|...+++++.+- + .+.++..+|.++...|++++|...+.+
T Consensus 412 al~--~~~~~----~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----p--s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 412 ALP--ELNVL----PRIYEILAVQALVKGKTDEAYQAINKAIDLE-----M--SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hcc--cCcCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 321 12222 3566667888888999999999999999732 2 367999999999999999999999999
Q ss_pred HHHHHH
Q 004081 624 SLSFCQ 629 (775)
Q Consensus 624 AL~la~ 629 (775)
|+.+.-
T Consensus 479 A~~L~P 484 (517)
T PRK10153 479 AFNLRP 484 (517)
T ss_pred HHhcCC
Confidence 988753
No 176
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.67 E-value=0.25 Score=47.59 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
...+.+-|......|+|.+|...|+....+||.-.......+.+. ..+...|+|.+|...+++.+.|-+.....
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~---yayy~~~~y~~A~a~~~rFirLhP~hp~v--- 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLA---YAYYKQGDYEEAIAAYDRFIRLHPTHPNV--- 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHH---HHHHHccCHHHHHHHHHHHHHhCCCCCCc---
Confidence 466788888889999999999999999999987665554444443 47899999999999999999998866643
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 004081 556 LKTEASLRHARTLLAANQ 573 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd 573 (775)
..+++.+|.......+
T Consensus 84 --dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 --DYAYYMRGLSYYEQDE 99 (142)
T ss_pred --cHHHHHHHHHHHHHhh
Confidence 4788888888877765
No 177
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.64 E-value=0.24 Score=49.67 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=91.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhh
Q 004081 467 SDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMA 546 (775)
Q Consensus 467 ~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~ 546 (775)
.+....++...++..+|.++...|++++|+..+.++.+.-. +..+..-+.+.++ +..+..|+|..+...+.++..+.
T Consensus 27 ~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--~~~~~id~~l~~i-rv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 27 KSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT--SPGHKIDMCLNVI-RVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--CHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455678889999999999999999999999998776432 2222222333322 68899999999999999999987
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004081 547 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 588 (775)
Q Consensus 547 ~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~ 588 (775)
...+ |.+.........|...+..|+|.+|.+.+-++...+
T Consensus 104 ~~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 104 EKGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred hccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 6544 777778888889999999999999999987766533
No 178
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.48 E-value=0.028 Score=40.85 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=30.4
Q ss_pred HHhhHHHHHHhhCChHHHHHHHHHHHHHHHHccch
Q 004081 224 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSND 258 (775)
Q Consensus 224 AlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe~~D~ 258 (775)
|+.|||.+|...|++++|+..+++++.++++..|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 68899999999999999999999999998887763
No 179
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.44 E-value=1.9 Score=45.51 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccc------------hhHHHHHHHHHHHHHhcCCh-------------
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ------------VENASVLLLLAEIHKKSGNA------------- 614 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~------------~~~a~aLl~lA~i~~~~G~~------------- 614 (775)
+-+...++++..|+..+|++..+.-+..+.+.-++ -|.++=...+|++......+
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 45567889999999999999999888877654333 34455577788888665521
Q ss_pred -hhHHHHHHHHHHHHHHhC----------------------CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 615 -VLGIPYALASLSFCQLLN----------------------LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 615 -~~Al~~l~~AL~la~~~g----------------------~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
..|-.++.+--..+.... .+........ +... ...|..|-...+++|+.++....
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~e~~~~hs~~iI~lL~~A~~~f~ 169 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYP-LLQS-EEKGVDHSKLIIELLEKAYEQFK 169 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHH-hhhc-cccccchHHHHHHHHHHHHHHHH
Confidence 122222222222222221 0000011111 0000 11233355788999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 672 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 672 ~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
..+...........+|+-+.. .|++++|+.+|+.+...|++=+|..-..+++..+......+||.+.--.
T Consensus 170 ~~~~~R~~~~l~~~~A~ey~~------~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 170 KYGQNRMASYLSLEMAEEYFR------LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HhccchHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999987654
No 180
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.42 E-value=0.65 Score=43.27 Aligned_cols=106 Identities=11% Similarity=0.064 Sum_probs=80.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh---h-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccch----
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDM---D-LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV---- 595 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~---~-~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~---- 595 (775)
++.+..|-|.+|..-++.+....+.+++... + --+-+...++..+..+|+|++++...+.+|..+.+.|.-.
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 5788999999999999999998777664331 1 1134566788899999999999999999999998876532
Q ss_pred -hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 596 -ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 596 -~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
..+.+-..+|..+...|++++|+..+..+-++-.
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 2366788899999999999999999988877653
No 181
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=7.3 Score=45.46 Aligned_cols=258 Identities=13% Similarity=-0.024 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hhhcCch------HHHHHHHhhHHHHHHhcCCHHHHHHHHHHH
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEK----FLSVSKS------RILLLKLQLLHERSLHRGHLKLAQKVCDEL 542 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~----f~~~~~~------~~~~l~l~l~~~~al~~G~~~~A~~~l~~l 542 (775)
++.-..+.|.|..+...|.|.+|++.|+.++.+ +.....+ .+..|++|+. .+....|+-.+|..++...
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla-yVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA-YVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHH
Confidence 444567789999999999999999999999443 3222222 2455666543 4677899999999999988
Q ss_pred hhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHH-HHHHH---HHHH-HHhhcccchhHHHHHHHHHHHHHhc------
Q 004081 543 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEA-AAVAH---SLFC-MCYKFNLQVENASVLLLLAEIHKKS------ 611 (775)
Q Consensus 543 l~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eA-l~~l~---~aL~-~~~~~gd~~~~a~aLl~lA~i~~~~------ 611 (775)
+.. ...|....+.+.+++.-+-.-..=++.+ +...+ ..+. .+...-.....-.++.+.+.+.+..
T Consensus 251 i~~----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 251 IKR----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHh----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 874 2236445556666655443222212210 00000 0000 0000000000001111111111111
Q ss_pred --------CC-hhhHHHHHHHHHHHHHHh--------------CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-
Q 004081 612 --------GN-AVLGIPYALASLSFCQLL--------------NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL- 667 (775)
Q Consensus 612 --------G~-~~~Al~~l~~AL~la~~~--------------g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aL- 667 (775)
+. |+.-++.+.++...+++. +.+-....+.+.++.+....|.+ +.|++.+.-.+
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~--~~A~~il~~~~~ 404 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP--EVALEILSLFLE 404 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHHHhh
Confidence 11 122233333333333222 23333455667777788888887 89999888222
Q ss_pred ---hHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCHH
Q 004081 668 ---PLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE-DHELAAEAFYLIAIVFDKLGRLA 743 (775)
Q Consensus 668 ---p~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~-~~~~~~evl~~LA~l~~~lGd~~ 743 (775)
..+.+.++... .+-...+ .+.. .++...|...|.+|..+|+.-. .-......+...|.+....|..+
T Consensus 405 ~~~ss~~~~~~~P~--~V~aiv~-l~~~------~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 405 SWKSSILEAKHLPG--TVGAIVA-LYYK------IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred hhhhhhhhhccChh--HHHHHHH-HHHh------ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 11222222222 1211121 1222 4555668889999999998543 34555666667777777777766
Q ss_pred HHH
Q 004081 744 ERE 746 (775)
Q Consensus 744 ~A~ 746 (775)
+|-
T Consensus 476 ea~ 478 (652)
T KOG2376|consen 476 EAS 478 (652)
T ss_pred HHH
Confidence 653
No 182
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.65 Score=46.98 Aligned_cols=92 Identities=20% Similarity=0.097 Sum_probs=80.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
......|++++|...+.+.+.. ..|......+..+++++.+..|.+++|+..++..- +.-+..++.-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w~~~~~el 164 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESWAAIVAEL 164 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccHHHHHHHH
Confidence 5778999999999999999874 33878888999999999999999999999886543 35567788889
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
+|.++...|+-..|+.-+.+|+..
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHc
Confidence 999999999999999999998877
No 183
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.25 E-value=4.7 Score=47.45 Aligned_cols=246 Identities=13% Similarity=0.088 Sum_probs=158.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHH
Q 004081 483 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 562 (775)
Q Consensus 483 A~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~ 562 (775)
...+..||+...-...+++|+...|.-...++|-+-+.+ ....|-...+...+++-+.+++ . ..-
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~F----v~~~~lPets~rvyrRYLk~~P-------~----~~e 173 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKF----VESHGLPETSIRVYRRYLKVAP-------E----ARE 173 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHH----HHhCCChHHHHHHHHHHHhcCH-------H----HHH
Confidence 345567888888888899998888766667788887643 3445556789999999988743 2 345
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 641 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd-~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 641 (775)
.-+.++...++.++|...+...+..-+-.+- ....-+.+..++.+..+. +......--.|+-..--..++.....-.
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~--p~~~~slnvdaiiR~gi~rftDq~g~Lw 251 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN--PDKVQSLNVDAIIRGGIRRFTDQLGFLW 251 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC--cchhcccCHHHHHHhhcccCcHHHHHHH
Confidence 5678889999999999999888742221111 111233456666655443 3333332222322222223344555667
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHH------HHhhhcCCCCC------------------
Q 004081 642 LTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE------AKCLLSDPSFS------------------ 697 (775)
Q Consensus 642 ~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~L------Ar~~lA~~~~~------------------ 697 (775)
+.||+-|+..|.. ++|+++++++|..+....|....=.+|..+ +++.+++...+
T Consensus 252 ~SLAdYYIr~g~~--ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 252 CSLADYYIRSGLF--EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHHHHHHHhhhh--HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 7899999989886 999999999999988877765544444322 23332311000
Q ss_pred -----------------------------CCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 698 -----------------------------VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 698 -----------------------------~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
..|++++.+..+.+|..-..-...+..........|.+|...|+.+.|..
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 14666777777888876555444455566677788888999998888754
No 184
>PLN02789 farnesyltranstransferase
Probab=95.24 E-value=0.7 Score=50.87 Aligned_cols=127 Identities=11% Similarity=-0.045 Sum_probs=96.6
Q ss_pred HhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 527 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 527 l~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~G-d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
...+++.+|..+..+++.+-+ . -..+...++.++..+| ++.+|++.+++++.. ......++..++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP-------~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------npknyqaW~~R~ 113 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNP-------G-NYTVWHFRRLCLEALDADLEEELDFAEDVAED------NPKNYQIWHHRR 113 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCc-------h-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------CCcchHHhHHHH
Confidence 446788899999999988733 2 3567888899999999 689999999999863 233456677788
Q ss_pred HHHHhcCCh--hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCC
Q 004081 606 EIHKKSGNA--VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG 675 (775)
Q Consensus 606 ~i~~~~G~~--~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~ 675 (775)
.+..+.|.. .+++..+.+++++-.++ ..+....+.++..+|.. ++|++.++.++..--...+
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkN------y~AW~~R~w~l~~l~~~--~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKN------YHAWSHRQWVLRTLGGW--EDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHCCCchh
Confidence 888888874 56788888887765432 36777788888889987 9999999999876544433
No 185
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=3.3 Score=44.25 Aligned_cols=245 Identities=10% Similarity=0.017 Sum_probs=161.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhcCch----H-HHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 481 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS----R-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 481 ~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~----~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
.+|.-.....+|++|...+.+.+..--+.... + ...+.+ |..++..|++..-.+...+...+..... .|.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel---~~lyv~~g~~~~l~~~i~~sre~m~~ft--k~k 82 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLEL---FKLYVSKGDYCSLGDTITSSREAMEDFT--KPK 82 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHH---HHHHHhcCCcchHHHHHHhhHHHHHHhc--chh
Confidence 34555566778899988888776552111111 1 112222 3678999999888888887776654332 222
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
..-.+..+.-..-.....++.-+++++..++.+.+......+...-.-+..++.+.|.|..|+.....-+.--.+..+..
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~ 162 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKI 162 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcc
Confidence 11111111122223456778888888888888777666666666677888899999999999998888888888888877
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH-HhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLI-LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i-l~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
....+.+.=..++..+... .++..-+..+-... -..-.+.++|..-..-|-.+.. ..++-.|-.|+=+|++
T Consensus 163 ~Li~vhllESKvyh~irnv--~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcd------d~dyktA~SYF~Ea~E 234 (421)
T COG5159 163 NLITVHLLESKVYHEIRNV--SKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCD------DRDYKTASSYFIEALE 234 (421)
T ss_pred ceeehhhhhHHHHHHHHhh--hhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeec------cccchhHHHHHHHHHh
Confidence 7777777677788777665 56666655553222 1223456666665555544444 4566789999999999
Q ss_pred HHHhccCHHHHHHHHHH--HHHHHHh
Q 004081 715 ELQVLEDHELAAEAFYL--IAIVFDK 738 (775)
Q Consensus 715 ~f~~l~~~~~~~evl~~--LA~l~~~ 738 (775)
.|..+.+..+.|.++.. |..++..
T Consensus 235 gft~l~~d~kAc~sLkYmlLSkIMlN 260 (421)
T COG5159 235 GFTLLKMDVKACVSLKYMLLSKIMLN 260 (421)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999988888764 4444443
No 186
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.09 E-value=2.3 Score=44.91 Aligned_cols=183 Identities=16% Similarity=0.101 Sum_probs=123.2
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
.......++..|...+..|+|++|.+.++.+.. +.....+.-++++.++..+.+.|+++.|+..+.+=+.+.-.+.+
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~---~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDS---RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 344678899999999999999999999988763 33344555889999999999999999999998887776644443
Q ss_pred cHHHHHHHHHHHHHHHH-cCCC--hHHHHHHHHHHHHhHHHhcCCHH--HHHHHH------------HHHHHhhhcCCCC
Q 004081 634 DLLKASATLTLAELWLS-FGPN--HAKMASNLIQQALPLILGHGGLE--LRARAF------------IAEAKCLLSDPSF 696 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~-lG~~--~f~~Al~lLe~aLp~il~~G~~~--l~A~a~------------~~LAr~~lA~~~~ 696 (775)
- ..+....|..+.. +-+. .-..++..+...=..|....+-. .-|... +..|+-|+.
T Consensus 107 ~---dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k---- 179 (254)
T COG4105 107 A---DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK---- 179 (254)
T ss_pred h---hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3 3333333333221 2221 11344444444434444443321 112222 233444555
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004081 697 SVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 751 (775)
Q Consensus 697 ~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~ 751 (775)
.|.+..|+..+++.++-| ++-....++|..+..+|..+|..++|++++++
T Consensus 180 --r~~~~AA~nR~~~v~e~y---~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 180 --RGAYVAAINRFEEVLENY---PDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred --hcChHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 788888888888887765 56667888999999999999999999997644
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.02 E-value=0.12 Score=43.06 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
..++..++|.+|.+.+++++.+.+ + ....+...|.++...|++.+|++.+++++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-----~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-----D---DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-----c---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 468899999999999999999744 2 456788899999999999999999999997543
No 188
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.2 Score=53.35 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..-..--|+.+-..|.|.+|+.++...... + .-+-..++++- ......||+..++.+++|+.. +
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~---~L~~~~lqLqa--AIkYse~Dl~g~rsLveQlp~----------e 141 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN-P---ALHSRVLQLQA--AIKYSEGDLPGSRSLVEQLPS----------E 141 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC-H---HHHHHHHHHHH--HHhcccccCcchHHHHHhccC----------C
Confidence 344444566677778888888887643321 0 00112233322 345678999999988888642 1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
+.+.+..+.+-++...|+|++|+..++.+++.. |...+ +-..+|.+|.+.|++..|+.+..+-++..-+.+-
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyqpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhc---CCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 245678899999999999999999999998631 33333 4457889999999999999998777666544443
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.86 E-value=3.3 Score=46.04 Aligned_cols=143 Identities=21% Similarity=0.146 Sum_probs=100.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.+.--||-..|++.-.+...+.++ | .+..+.++.+..-+..|+|++|...++.++. |+.. |.+.+.
T Consensus 93 iAagAGda~lARkmt~~~~~llss----D--qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEt--RllGLR 158 (531)
T COG3898 93 IAAGAGDASLARKMTARASKLLSS----D--QEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPET--RLLGLR 158 (531)
T ss_pred hhhccCchHHHHHHHHHHHhhhhc----c--chHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHH--HHHhHH
Confidence 567788999999888887755432 3 4667888889999999999999999988874 3333 332223
Q ss_pred HHH--HHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHH
Q 004081 605 AEI--HKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 682 (775)
Q Consensus 605 A~i--~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a 682 (775)
|.- -.+.|..+.|..+..+|...+... .+.+.+.+ +-.++-|+. +.|+++++.....-.-..+.-.+-++
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l---~WA~~AtL---e~r~~~gdW--d~AlkLvd~~~~~~vie~~~aeR~rA 230 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQL---PWAARATL---EARCAAGDW--DGALKLVDAQRAAKVIEKDVAERSRA 230 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCC---chHHHHHH---HHHHhcCCh--HHHHHHHHHHHHHHhhchhhHHHHHH
Confidence 222 257899999999999888877532 23444433 445678998 99999999987766555666666666
Q ss_pred HHHHHHh
Q 004081 683 FIAEAKC 689 (775)
Q Consensus 683 ~~~LAr~ 689 (775)
-.+-|++
T Consensus 231 vLLtAkA 237 (531)
T COG3898 231 VLLTAKA 237 (531)
T ss_pred HHHHHHH
Confidence 6655544
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.71 E-value=0.13 Score=58.28 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA-SVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a-~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
..+++++++..+...|+|++|+..+++++++. .....+ .++.++|.+|...|++++|+..+.+|+++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999842 122223 57999999999999999999999999997
No 191
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.42 Score=53.11 Aligned_cols=103 Identities=17% Similarity=0.070 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc-cc--------hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQ--------VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g-d~--------~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
..-..+..+...|+|..|...+++++....... .. ....-+++++|.++++.++|..|+....++|.+-..
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 455567888999999999999998876544211 11 112346999999999999999999999999987532
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 631 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 631 ~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
...++.+=|.+++.+|+. +.|+..|+.++..-
T Consensus 290 ------N~KALyRrG~A~l~~~e~--~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 290 ------NVKALYRRGQALLALGEY--DLARDDFQKALKLE 321 (397)
T ss_pred ------chhHHHHHHHHHHhhccH--HHHHHHHHHHHHhC
Confidence 258889999999999987 99999999998764
No 192
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.44 E-value=6.5 Score=39.98 Aligned_cols=104 Identities=18% Similarity=0.062 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcC
Q 004081 595 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 674 (775)
Q Consensus 595 ~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G 674 (775)
.--.-+.+.+|..+...|+++.|...+..++.... +..+.+.+..+||.|+++.|.. ++|+..|+..-.-
T Consensus 86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---De~lk~l~~lRLArvq~q~~k~--D~AL~~L~t~~~~----- 155 (207)
T COG2976 86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK---DENLKALAALRLARVQLQQKKA--DAALKTLDTIKEE----- 155 (207)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch---hHHHHHHHHHHHHHHHHHhhhH--HHHHHHHhccccc-----
Confidence 33455688899999999999999999998886543 5567788888999999999998 9999987765221
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 675 GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 675 ~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
.-.++...+-|.++++ .|+..+|+..+++|++..
T Consensus 156 --~w~~~~~elrGDill~------kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 --SWAAIVAELRGDILLA------KGDKQEARAAYEKALESD 189 (207)
T ss_pred --cHHHHHHHHhhhHHHH------cCchHHHHHHHHHHHHcc
Confidence 2345555666777788 899999999999998765
No 193
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.41 E-value=10 Score=43.21 Aligned_cols=220 Identities=14% Similarity=0.047 Sum_probs=144.6
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCc--hHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSK--SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 566 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~--~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ 566 (775)
..+.+.+.++.+.++.+.|.-.- +.+|++..+ -.+++-+...|++++..+...++. | ...-.-+.
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~----feIRq~~l~~ARkiLG~AIG~cPK----~-----KlFk~YIe 445 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQ----FEIRQLNLTGARKILGNAIGKCPK----D-----KLFKGYIE 445 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHH----HHHHHcccHHHHHHHHHHhccCCc----h-----hHHHHHHH
Confidence 45677778888888887664332 457877643 467888999999999999887552 2 34445567
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 004081 567 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 646 (775)
Q Consensus 567 ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 646 (775)
+-+.+++++.-..++++.++ ..+....++..-|.+-..+|+.++|...+.-|++--. +.+--++--+-
T Consensus 446 lElqL~efDRcRkLYEkfle------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~------ldmpellwkaY 513 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLE------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA------LDMPELLWKAY 513 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHh------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc------cccHHHHHHHh
Confidence 77889999999999999885 4566788899999999999999999988875554321 11222222222
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCC-----------ChHHHHHHHHHHHHH
Q 004081 647 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ-----------NPEAVLDPLRQASEE 715 (775)
Q Consensus 647 l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g-----------~~~~Al~~L~~Al~~ 715 (775)
+-..+...||++|+.++++.|..-. ...++..+|+-..+.+. +..+ ....|...+++|...
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~rt~-------h~kvWisFA~fe~s~~~-~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLDRTQ-------HVKVWISFAKFEASASE-GQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhcc-------cchHHHhHHHHhccccc-cccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 2223333466999999999987642 22467777755543211 1112 356788999999999
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCC
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGR 741 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd 741 (775)
++..+........|-..-..-...|+
T Consensus 586 ~k~~~~KeeR~~LLEaw~~~E~~~G~ 611 (677)
T KOG1915|consen 586 LKESTPKEERLMLLEAWKNMEETFGT 611 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 98888744443333333333333443
No 194
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=8.9 Score=41.12 Aligned_cols=215 Identities=15% Similarity=0.100 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
..-.+..+|...+...|+|..--+.+.+..+.+.....++...+--.+.-..--....++.-...+..+..-+.+-. .
T Consensus 43 EqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r 120 (421)
T COG5159 43 EQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--R 120 (421)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--H
Confidence 33455677777777788877666665555555444444432211000000001112233333334433333221100 1
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
.-.+.+....++.++...|.|.+|+.+++..+....+..|...-+.+++.-.-+|....+..++..-+..|-.+|.....
T Consensus 121 ~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC 200 (421)
T COG5159 121 KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC 200 (421)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Confidence 22334555667888999999999999999999999999999888999999999999999998888888888888877666
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHH---HHHHHHhhhc
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA---FIAEAKCLLS 692 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a---~~~LAr~~lA 692 (775)
|...---+-.+..++..-.+ .|.-|...|-++++-..- ++...+|+. |++|.+..+.
T Consensus 201 Ppqlqa~lDL~sGIlhcdd~-dyktA~SYF~Ea~Egft~-l~~d~kAc~sLkYmlLSkIMlN 260 (421)
T COG5159 201 PPQLQAQLDLLSGILHCDDR-DYKTASSYFIEALEGFTL-LKMDVKACVSLKYMLLSKIMLN 260 (421)
T ss_pred CHHHHHHHHHhccceeeccc-cchhHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHh
Confidence 65544334445555432222 368899999999887643 444455554 4555554444
No 195
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.32 E-value=0.27 Score=57.96 Aligned_cols=124 Identities=13% Similarity=-0.001 Sum_probs=85.0
Q ss_pred HhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 004081 527 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 606 (775)
Q Consensus 527 l~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~ 606 (775)
..+++|.++..+++....+-+ +....++..+-+.+..++++.|.+.+..... ..+.++.++.+++.
T Consensus 496 ~~~~~fs~~~~hle~sl~~np--------lq~~~wf~~G~~ALqlek~q~av~aF~rcvt------L~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINP--------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT------LEPDNAEAWNNLST 561 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCc--------cchhHHHhccHHHHHHhhhHHHHHHHHHHhh------cCCCchhhhhhhhH
Confidence 346888888888888877632 2566788888888888888888888877664 45667788888888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 607 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 607 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
.|++.|.-.+|+..+.+|+.--.+ +- .+--+.-.+-..+|. |++|.+.+.+.+.+-..
T Consensus 562 ayi~~~~k~ra~~~l~EAlKcn~~-~w-----~iWENymlvsvdvge--~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 562 AYIRLKKKKRAFRKLKEALKCNYQ-HW-----QIWENYMLVSVDVGE--FEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCC-CC-----eeeechhhhhhhccc--HHHHHHHHHHHHHhhhh
Confidence 888888888888888888765421 11 111122222334554 48888888887665433
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.28 E-value=0.12 Score=43.12 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=51.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 565 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 565 a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
..+++..++|++|++.++.++.. .+.....+..+|.++...|++..|+..+.+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46789999999999999999974 334678899999999999999999999999998765
No 197
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.10 E-value=1.6 Score=43.83 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=85.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..+...|++..|.+.+.++..... .+.......+..+++.+..||+......++++-......||...+.+....
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 578899999999999999888533 455688999999999999999999999999999988888887777788888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
.|..++..|++..|-..+..++.-
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHhchHHHHHHHHHccCcC
Confidence 888889999999999888776543
No 198
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=94.00 E-value=3.4 Score=53.43 Aligned_cols=182 Identities=17% Similarity=0.033 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH---hcC-C---------------------
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK---KSG-N--------------------- 613 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~---~~G-~--------------------- 613 (775)
...-.+|.+++..|++.+|++.+.+++..++..+|..|.+.++=.++.+.. ..| .
T Consensus 243 R~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s 322 (1185)
T PF08626_consen 243 RLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSS 322 (1185)
T ss_pred hhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccC
Confidence 345567889999999999999999999999999999998876433332221 111 0
Q ss_pred -------------------------------hhhHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHcC---
Q 004081 614 -------------------------------AVLGIPYALASLSFCQLL-------NLDLLKASATLTLAELWLSFG--- 652 (775)
Q Consensus 614 -------------------------------~~~Al~~l~~AL~la~~~-------g~~~~~A~al~~La~l~l~lG--- 652 (775)
+..=...+.+++.+..+. .-+...+++.+.++.++..+.
T Consensus 323 ~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~ 402 (1185)
T PF08626_consen 323 PRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSD 402 (1185)
T ss_pred cccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhccc
Confidence 000112344566666555 477899999999999999988
Q ss_pred -----------------CChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 653 -----------------PNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 653 -----------------~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
.. .++.+.+.++++.-+..-+..++.+.|..+|.+|-. .|-.++..-++++++..
T Consensus 403 ~l~~iV~~~~~~~~~~~~~--~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~------lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 403 NLDHIVKRPLTPTPNISSR--SEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGS------LGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred chhhhhccccccccCCCCH--HHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHH
Confidence 66 889999999999888777899999999999998887 55554444444433332
Q ss_pred HHh-------------------------------------cc-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004081 716 LQV-------------------------------------LE-DHELAAEAFYLIAIVFDKLGRLAEREEA 748 (775)
Q Consensus 716 f~~-------------------------------------l~-~~~~~~evl~~LA~l~~~lGd~~~A~~a 748 (775)
+-. .+ |+..+..++..+-.+-..+||...+-++
T Consensus 475 ~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~ 545 (1185)
T PF08626_consen 475 LVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRF 545 (1185)
T ss_pred hccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 210 01 6777777777777777777777776553
No 199
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.97 E-value=11 Score=40.61 Aligned_cols=139 Identities=15% Similarity=0.091 Sum_probs=94.8
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhhc-c--c-----chh
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKF-N--L-----QVE 596 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~G-d~~eAl~~l~~aL~~~~~~-g--d-----~~~ 596 (775)
++.+||++.|...+.++..+.....+....-.+...++.|.-+...+ ++++|..+++++.+.+... . . ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 67889999999999999887544444455556788899999999999 9999999999999997541 1 1 134
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFC-QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la-~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+..++..++.++...+.++.... +.+++... .+++++.....-.+ +++...+.. +++.+.+.+.+-.+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~~~~~~~L~l---~il~~~~~~--~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGNKPEVFLLKL---EILLKSFDE--EEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCCCcHHHHHHH---HHHhccCCh--hHHHHHHHHHHHhc
Confidence 67899999999999998854433 55555655 34444322221111 222224555 66666666665544
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.89 E-value=0.089 Score=43.16 Aligned_cols=56 Identities=21% Similarity=0.141 Sum_probs=45.9
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 568 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 568 l~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
++..|+|++|++.+++++.. .+....+.+.+|.++.+.|++++|...+.+.+....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46789999999999999863 344678888999999999999999999987766543
No 201
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.56 E-value=5.4 Score=47.38 Aligned_cols=171 Identities=16% Similarity=0.112 Sum_probs=98.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHH-------------H------HHHH
Q 004081 566 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA-------------L------ASLS 626 (775)
Q Consensus 566 ~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l-------------~------~AL~ 626 (775)
.++-..|++.+|.++.++.. .+...+..++.+|+=....|++.+|..++ . ..+.
T Consensus 799 ~my~k~~kw~da~kla~e~~-------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECH-------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHhccccHHHHHHHHHHhc-------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence 34445555555555544332 12223444566666555666655554433 2 2444
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHH-------------------HHHHHHHhHHHhcCCHHHHHHHHHHHH
Q 004081 627 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMAS-------------------NLIQQALPLILGHGGLELRARAFIAEA 687 (775)
Q Consensus 627 la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al-------------------~lLe~aLp~il~~G~~~l~A~a~~~LA 687 (775)
+..+++-+++ .....++|.-+.+-|+. ++|. .+++.+......-|.....-.+.++-|
T Consensus 872 lv~k~h~d~l-~dt~~~f~~e~e~~g~l--kaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 872 LVEKHHGDHL-HDTHKHFAKELEAEGDL--KAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred HHHHhChhhh-hHHHHHHHHHHHhccCh--hHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 5444443333 34566788888888886 4443 344555666666666666666666666
Q ss_pred HhhhcCCCCC---CCCChHHHHHH------HHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 688 KCLLSDPSFS---VSQNPEAVLDP------LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 688 r~~lA~~~~~---~~g~~~~Al~~------L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+..-.++.-+ ..|-++.++++ ++-|++.. +++...+..+|...+|+.....|..++|-+
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdla-ri~~k~k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLA-RIAAKDKMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHH-HHhhhccCccchhHHhhhhhhccchhhhhH
Confidence 6544432211 24555555553 34455543 677777888999999999999999998843
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=2.5 Score=44.71 Aligned_cols=133 Identities=14% Similarity=-0.017 Sum_probs=105.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++-.|+|.-....+..+... |++........++++-+..||-..|-..+++................|+.+
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4567788999999988888773 666677778899999999999999999999887777777777888999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
++.||..+.++..|...+.+.+..- ++ -+.+.++-|-+++-+|+. ..|++.+++++|++-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D----~~--~~~a~NnKALcllYlg~l--~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD----PR--NAVANNNKALCLLYLGKL--KDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC----CC--chhhhchHHHHHHHHHHH--HHHHHHHHHHhccCC
Confidence 9999999999999887776655432 22 233444455555568998 999999999998873
No 203
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=5.3 Score=42.45 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHH
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 559 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~ 559 (775)
.--|..+...|+|++|+..+...... ... .+.+ ...+...+.+-|...+++...+ | .-.
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~--Al~V--qI~lk~~r~d~A~~~lk~mq~i-------d---ed~ 170 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL-------EAA--ALNV--QILLKMHRFDLAEKELKKMQQI-------D---EDA 170 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH-------HHH--HHHH--HHHHHHHHHHHHHHHHHHHHcc-------c---hHH
Confidence 33455667789999999988742111 112 2222 3567777888999988888775 3 113
Q ss_pred HHHHHHHHH--HHcCChHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 560 ASLRHARTL--LAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 560 a~~~~a~ll--~~~Gd~~eAl~~l~~aL~~~~~~gd-~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.+..+|..| ++.|- +.++.+.-++++..+ .......++.+|.+++..|++++|...+..||.- ..++
T Consensus 171 tLtQLA~awv~la~gg-----ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~d--- 240 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGG-----EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKD--- 240 (299)
T ss_pred HHHHHHHHHHHHhccc-----hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCC---
Confidence 344444444 44442 224555555555555 4445678899999999999999999999988764 4444
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMAS 660 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al 660 (775)
..++.++--+-+.+|.+ .++.
T Consensus 241 -petL~Nliv~a~~~Gkd--~~~~ 261 (299)
T KOG3081|consen 241 -PETLANLIVLALHLGKD--AEVT 261 (299)
T ss_pred -HHHHHHHHHHHHHhCCC--hHHH
Confidence 34444455555668887 4443
No 204
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.15 E-value=1.9 Score=51.23 Aligned_cols=152 Identities=14% Similarity=-0.029 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
+|...+|.....+++|.++..+++...+.-|-. ...|... + ..++..+++..|...+.+...+.+ |
T Consensus 486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~-G---~~ALqlek~q~av~aF~rcvtL~P-----d--- 551 (777)
T KOG1128|consen 486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGL-G---CAALQLEKEQAAVKAFHRCVTLEP-----D--- 551 (777)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhc-c---HHHHHHhhhHHHHHHHHHHhhcCC-----C---
Confidence 344445555555677777777777766655321 1123322 1 367888999999999999988733 3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.++++++++..+++.|+-.+|...+.+++. |. +....++-+--.+-...|..+.|+..+.+-+.+-+...++-.
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-----~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v 625 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-----YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV 625 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-----CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence 689999999999999999999999999996 21 333444444445566899999999999999999877766554
Q ss_pred HHHHHHHHHHHH
Q 004081 637 KASATLTLAELW 648 (775)
Q Consensus 637 ~A~al~~La~l~ 648 (775)
.......+.+..
T Consensus 626 l~~iv~~~~~~~ 637 (777)
T KOG1128|consen 626 LLIIVRTVLEGM 637 (777)
T ss_pred hHHHHHHHHhhc
Confidence 444444444444
No 205
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=5.6 Score=42.89 Aligned_cols=147 Identities=24% Similarity=0.222 Sum_probs=91.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHH
Q 004081 484 QHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 563 (775)
Q Consensus 484 ~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~ 563 (775)
.-....|++.+|...|..++...++.++.... +. +..+..|+...|..++.++-.- +.......+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~---la---~~~l~~g~~e~A~~iL~~lP~~-------~~~~~~~~l~a 208 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLL---LA---ECLLAAGDVEAAQAILAALPLQ-------AQDKAAHGLQA 208 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHH---HH---HHHHHcCChHHHHHHHHhCccc-------chhhHHHHHHH
Confidence 34456788999999999888887765332211 11 4678889999999888876441 11112223333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 004081 564 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 643 (775)
Q Consensus 564 ~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 643 (775)
...++.+..+..+...+.+++-. ......+-+.+|..+...|+++.|++++..-+..-+...++ .++..
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aa-------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~----~~Rk~ 277 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAA-------DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG----EARKT 277 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc----HHHHH
Confidence 44555555555555444443332 22335556678889999999999999997666654443333 34455
Q ss_pred HHHHHHHcCCC
Q 004081 644 LAELWLSFGPN 654 (775)
Q Consensus 644 La~l~l~lG~~ 654 (775)
|-++...+|..
T Consensus 278 lle~f~~~g~~ 288 (304)
T COG3118 278 LLELFEAFGPA 288 (304)
T ss_pred HHHHHHhcCCC
Confidence 66777777854
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.70 E-value=4.5 Score=46.98 Aligned_cols=165 Identities=15% Similarity=0.073 Sum_probs=108.6
Q ss_pred cCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHH---------HcCChHHHHHHHHHHHHHHhhcccchhHHH
Q 004081 529 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL---------AANQFSEAAAVAHSLFCMCYKFNLQVENAS 599 (775)
Q Consensus 529 ~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~---------~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~ 599 (775)
.||-+.+.+.+.+.... + +..+....+.+++-... ...+...|.+.+......+ +.-+-
T Consensus 201 ~gdR~~GL~~L~~~~~~----~--~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y------P~s~l 268 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS----E--NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY------PNSAL 268 (468)
T ss_pred CCcHHHHHHHHHHHhcc----C--CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC------CCcHH
Confidence 46777777766665441 1 33333333333333322 2334555666666655422 23356
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHH
Q 004081 600 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR 679 (775)
Q Consensus 600 aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~ 679 (775)
.+...|.++...|+++.|+..+.+|+.. +...+-....+...++..+..+++. ++|...+..... .+.+-+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w--~~A~~~f~~L~~-----~s~WSk 339 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDW--EEAAEYFLRLLK-----ESKWSK 339 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchH--HHHHHHHHHHHh-----ccccHH
Confidence 7889999999999999999999998843 3345566778888888888888887 999988887755 466789
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhcc
Q 004081 680 ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE 720 (775)
Q Consensus 680 A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~ 720 (775)
|...+..|-|+.. .|+...+...-++|.+.|+++.
T Consensus 340 a~Y~Y~~a~c~~~------l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 340 AFYAYLAAACLLM------LGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHh------hccchhhhhhHHHHHHHHHHHH
Confidence 9999999999998 6666444444444444444443
No 207
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.69 E-value=2.2 Score=52.20 Aligned_cols=177 Identities=14% Similarity=-0.061 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
..+.+-..++-.++...++++|+..+-.+-+..+.......|.. .++ -++..+++..|...++.++.. ++.|
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~-rG~---yyLea~n~h~aV~~fQsALR~----dPkD 595 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ-RGP---YYLEAHNLHGAVCEFQSALRT----DPKD 595 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh-ccc---cccCccchhhHHHHHHHHhcC----Cchh
Confidence 33455566777888899999999997776666654444444554 233 578899999999999998875 2334
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HHhC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC-QLLN 632 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la-~~~g 632 (775)
..++..++..+.+.|+|..|++.++++.. .++...-+..-.|.+....|.+..|+..+..-+... ...-
T Consensus 596 ----~n~W~gLGeAY~~sGry~~AlKvF~kAs~------LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~ 665 (1238)
T KOG1127|consen 596 ----YNLWLGLGEAYPESGRYSHALKVFTKASL------LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT 665 (1238)
T ss_pred ----HHHHHHHHHHHHhcCceehHHHhhhhhHh------cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999988864 234444555667777778999999987765433222 2222
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
...+.+++.++++......|-. .+|.+.++..+..+
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~--~kavd~~eksie~f 701 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQ--KKAVDFFEKSIESF 701 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHH
Confidence 3345567777788888888877 78888888876654
No 208
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.69 E-value=12 Score=39.95 Aligned_cols=236 Identities=14% Similarity=-0.010 Sum_probs=148.1
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCchHHHHHH-HhhHHHHHHhcCCHHHHHHHHHHHhhhhhc-CCCCChhhHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASS-VTGVDMDLKTEASLRHAR 566 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~L~~~-~~~~D~~~~~~a~~~~a~ 566 (775)
..++++|+.-++..++.-++-+ -|-.+ +.......++.|+|.+-.+.+.+++....+ +...-. -...+..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKg---eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS---EKsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKG---EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS---EKSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccc---hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHH
Confidence 3467788887777776543332 24432 322226789999999999999999987543 221111 112222222
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--------HhCCcHHHH
Q 004081 567 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ--------LLNLDLLKA 638 (775)
Q Consensus 567 ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~--------~~g~~~~~A 638 (775)
+--...+.+--.+.++..+.-.++....+..+..-.-+|.++...|++.+-...+.+--.-|+ +-|-++++.
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 222333333334455555555555555555566777888999988888776665555444442 223334444
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 718 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~ 718 (775)
.|+- -.+|...... .+-..++++++.+--....+..-+...-.=|++|++ .|++++|---+=+|+.-|..
T Consensus 194 YAlE--IQmYT~qKnN--KkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr------eg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 194 YALE--IQMYTEQKNN--KKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR------EGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HhhH--hhhhhhhccc--HHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc------cchHHHHHhHHHHHHhcccc
Confidence 4433 2344445555 566677888888877778888888777777899999 99999999888899999988
Q ss_pred ccCHHH-HHHHHHHHHHHHHhcC
Q 004081 719 LEDHEL-AAEAFYLIAIVFDKLG 740 (775)
Q Consensus 719 l~~~~~-~~evl~~LA~l~~~lG 740 (775)
-|.|++ .|--+..||......|
T Consensus 264 sGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 264 SGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cCCcchhHHHHHHHHHHHHHHcC
Confidence 887665 4444555666666655
No 209
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.67 E-value=0.25 Score=35.80 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 601 LLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 601 Ll~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
+..+|.+|.+.|++++|+.++.++|.+...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 445666666666666666666666655544
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=92.64 E-value=0.83 Score=45.13 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=67.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.....|++++|+.+++-+..+ |+. .....+.+|.++..+|+|++|+..+..+..+. ..|++ .....
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-------d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~----p~f~a 111 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-------DFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYR----PVFFT 111 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------CcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCC----ccchH
Confidence 456778888888877776654 322 24567899999999999999999998776532 23333 35668
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la 628 (775)
|++++..|+...|...+..++..+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNERT 135 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCc
Confidence 999999999999999888777743
No 211
>PRK11906 transcriptional regulator; Provisional
Probab=92.50 E-value=7.5 Score=44.45 Aligned_cols=163 Identities=11% Similarity=-0.071 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHH---HHhhhcCchHHHHHHHhhHHHHHH-----hcCCHHHHHHHHHHHhhhh
Q 004081 478 AHVKLIQHLAVFKG---YKEAFSALKIAE---EKFLSVSKSRILLLKLQLLHERSL-----HRGHLKLAQKVCDELGVMA 546 (775)
Q Consensus 478 al~~LA~~la~~G~---y~eAl~~L~~a~---~~f~~~~~~~~~~l~l~l~~~~al-----~~G~~~~A~~~l~~ll~L~ 546 (775)
.++-.|..+..++. .+.|+.+|.++. +.-|...... ..++.. .+.+++ ...+..+|.++.+++..+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~-~~lA~~-h~~~~~~g~~~~~~~~~~a~~~A~rAvel- 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECY-CLLAEC-HMSLALHGKSELELAAQKALELLDYVSDI- 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHH-HHHHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHhc-
Confidence 45666777766555 456777788777 3333222221 111110 001111 244556666666666664
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 547 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 547 ~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
++.| +.++...|.++.-.|+++.|...+++++. ..+..+.++...|.++.-.|+.++|+.++.+|+.
T Consensus 334 ---d~~D----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 334 ---TTVD----GKILAIMGLITGLSGQAKVSHILFEQAKI------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred ---CCCC----HHHHHHHHHHHHhhcchhhHHHHHHHHhh------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4445 45688889999999999999999999986 3456689999999999999999999999999998
Q ss_pred HHHHhCCcHHHHHHHHHHHH-HHHHcCCChHHHHHHHHH
Q 004081 627 FCQLLNLDLLKASATLTLAE-LWLSFGPNHAKMASNLIQ 664 (775)
Q Consensus 627 la~~~g~~~~~A~al~~La~-l~l~lG~~~f~~Al~lLe 664 (775)
+.- ...+.....+.- +|..-+- +.|..++-
T Consensus 401 LsP-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 431 (458)
T PRK11906 401 LEP-----RRRKAVVIKECVDMYVPNPL---KNNIKLYY 431 (458)
T ss_pred cCc-----hhhHHHHHHHHHHHHcCCch---hhhHHHHh
Confidence 873 122222332333 5544443 56766653
No 212
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.50 E-value=28 Score=41.32 Aligned_cols=207 Identities=14% Similarity=0.051 Sum_probs=131.3
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhhhcC--CCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcC---------c
Q 004081 443 ATAWEAYGSAPLTRVNTLIYATCFSD--GSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS---------K 511 (775)
Q Consensus 443 aalW~~~G~~~La~l~~~i~~~~~~~--~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~---------~ 511 (775)
+.+++..|.-.-+++ ....-+. -...++.+.+.|+-|-.-.++.+++.|+.+++.|.. .|... .
T Consensus 394 aklYe~~~~l~~aRv----ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 394 AKLYENNGDLDDARV----IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH-VPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHhcCcHHHHHH----HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc-CCCchhhhhhcCCCc
Confidence 455555565555554 1111111 124678899999999999999999999999998763 22221 1
Q ss_pred hHHHHHH-Hhh---HHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004081 512 SRILLLK-LQL---LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 587 (775)
Q Consensus 512 ~~~~~l~-l~l---~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~ 587 (775)
.+....+ +.+ ..+..-..|=+......+++.+.|-- . ......+-|..+-.-.-|.+|.+.+++-+.+
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--a------TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--A------TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--C------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 1111111 211 11334456888888899999988722 1 3345667788887888889999999888765
Q ss_pred HhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 588 CYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA-TLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 588 ~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a-l~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
+.=. .+...-..++.+..-....-.+++|..++.+||+.|- ...+.. .+..|.+-...|.. ..|..+++++
T Consensus 541 Fk~p-~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp-----p~~aKtiyLlYA~lEEe~GLa--r~amsiyera 612 (835)
T KOG2047|consen 541 FKWP-NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP-----PEHAKTIYLLYAKLEEEHGLA--RHAMSIYERA 612 (835)
T ss_pred CCCc-cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHH
Confidence 4411 1111122345555555555678999999999999764 233333 34456666778887 8999999997
Q ss_pred HhHH
Q 004081 667 LPLI 670 (775)
Q Consensus 667 Lp~i 670 (775)
-..+
T Consensus 613 t~~v 616 (835)
T KOG2047|consen 613 TSAV 616 (835)
T ss_pred HhcC
Confidence 4444
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.45 E-value=0.88 Score=48.27 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=76.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
-++..|+|..|.+.+..-+.-++. ..-...+.+-+++.+..+|+|.+|...+..+.. +.++.......|+-+
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKl 221 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHH
Confidence 456678888888888887776553 223568899999999999999999999976654 567777778999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~l 627 (775)
|.+..+.|+.+.|...+.+.+.-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999998888766543
No 214
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.32 E-value=0.6 Score=47.38 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=80.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 642 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 642 (775)
-.+.-+...|+|.+|...+..+|..|..... ..+.-.+.+.|-++++++.-+.|+..+.+|+.+.-.+. .|+.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~------kAl~ 172 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE------KALE 172 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH------HHHH
Confidence 3466678999999999999999999986543 44566788999999999999999999999998875332 5566
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 643 TLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 643 ~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+-|.+|..+..+ +.|+.-|..++..-
T Consensus 173 RRAeayek~ek~--eealeDyKki~E~d 198 (271)
T KOG4234|consen 173 RRAEAYEKMEKY--EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHhhhhH--HHHHHHHHHHHHhC
Confidence 679999988665 99999988887653
No 215
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.24 E-value=18 Score=42.87 Aligned_cols=174 Identities=10% Similarity=0.008 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
..+.-.|..+.-.|+-++|......+...- ...+--|++ +++ ..+...+|++|..+++.++.+-+ |
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv-~gl---~~R~dK~Y~eaiKcy~nAl~~~~-----d--- 107 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHV-LGL---LQRSDKKYDEAIKCYRNALKIEK-----D--- 107 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHH-HHH---HHhhhhhHHHHHHHHHHHHhcCC-----C---
Confidence 344555666667788888888777665422 111222332 222 56777889999999999988622 3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--HhCCc
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ--LLNLD 634 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~--~~g~~ 634 (775)
-...+.-++.+-..+|+|+...+.=.+.++ +...+.-.++-.|..+.-.|++..|.+.+.+-...+. -...+
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLq------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQ------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 345667777777888888888877777775 3444455677777788888889888888776665553 22345
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
+...++++.-..++...|.. +.|++++...=+.+..
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~--q~ale~L~~~e~~i~D 217 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSL--QKALEHLLDNEKQIVD 217 (700)
T ss_pred HHHHHHHHHHHHHHHHcccH--HHHHHHHHhhhhHHHH
Confidence 56667777777777888887 8999998888776643
No 216
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.09 E-value=0.5 Score=53.49 Aligned_cols=128 Identities=17% Similarity=0.048 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhH---HHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHhC
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN---ASVLLLLAEIHKKSGNAVLGIPYALASLS-FCQLLN 632 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~---a~aLl~lA~i~~~~G~~~~Al~~l~~AL~-la~~~g 632 (775)
...++++++......|+|..|++++...=-.+...|...++ --++.++|-||.+.|.|..+.-++.+||. .|.+..
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999997654333333333333 33578999999999999999999999995 554332
Q ss_pred Cc-----------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 633 LD-----------LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 633 ~~-----------~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
.. --..+++.+.|-.++++|+| -.|.+.|..+........-.|+ .||+|.++
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP--l~AfqCf~~av~vfh~nPrlWL------RlAEcCim 381 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP--LLAFQCFQKAVHVFHRNPRLWL------RLAECCIM 381 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCc--HHHHHHHHHHHHHHhcCcHHHH------HHHHHHHH
Confidence 21 12456788899999999999 9999999999998887765554 46666655
No 217
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.05 E-value=5.4 Score=41.25 Aligned_cols=77 Identities=17% Similarity=-0.012 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc
Q 004081 532 LKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS 611 (775)
Q Consensus 532 ~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~ 611 (775)
|+-|+.-+.|++++.+ + .+++.+.++.++...|+|+.|.+.++..+++ | ...-.+.+++|..+.--
T Consensus 81 ~~LAR~DftQaLai~P-----~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----D-p~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 81 RALARNDFSQALAIRP-----D---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----D-PTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHHHhhhhhhhhhcCC-----C---cHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----C-CcchHHHhccceeeeec
Confidence 3334444555666633 3 5678999999999999999999999998862 2 22233556667677777
Q ss_pred CChhhHHHHHH
Q 004081 612 GNAVLGIPYAL 622 (775)
Q Consensus 612 G~~~~Al~~l~ 622 (775)
|++.-|...+.
T Consensus 147 gR~~LAq~d~~ 157 (297)
T COG4785 147 GRYKLAQDDLL 157 (297)
T ss_pred CchHhhHHHHH
Confidence 88888876664
No 218
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=23 Score=39.17 Aligned_cols=86 Identities=17% Similarity=0.013 Sum_probs=59.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
+-.+.+.||..|..+++-.+.+ |.+-+-....-++.++..+|||.+|+..++-+.. ..+.. +.+...
T Consensus 30 edfls~rDytGAislLefk~~~-------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~--~el~vn 96 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNL-------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAP--AELGVN 96 (557)
T ss_pred HHHHhcccchhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCC--cccchh
Confidence 3456778999999888876654 4444455667788999999999999999977664 23334 344556
Q ss_pred HHHHHHhcCChhhHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYAL 622 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~ 622 (775)
+|-+..-.|.+.+|.....
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666666777777765443
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.96 E-value=1.5 Score=46.54 Aligned_cols=99 Identities=15% Similarity=0.039 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc---hHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~---~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..+.|.-+...|+|.+|.+.+..=...+|...- ..+|.-. ....+|+|.+|...+.....-++.. .
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe------~~y~qg~y~~Aa~~f~~~~k~~P~s-----~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGE------SLYAQGDYEDAAYIFARVVKDYPKS-----P 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHH------HHHhcccchHHHHHHHHHHHhCCCC-----C
Confidence 788899999999999999999988888886543 2356543 5678999999999999988755432 2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 588 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~ 588 (775)
-..++++-++.++.++|+.++|...+++++..+
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 256899999999999999999999999988743
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.83 E-value=9.1 Score=44.44 Aligned_cols=169 Identities=14% Similarity=0.010 Sum_probs=110.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhcCchH--HHHHHHh--hHHHHHH--hcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 484 QHLAVFKGYKEAFSALKIAEEKFLSVSKSR--ILLLKLQ--LLHERSL--HRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 484 ~~la~~G~y~eAl~~L~~a~~~f~~~~~~~--~~~l~l~--l~~~~al--~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
...-..|+-+.++..|.++.+ .......- ...+... +.....+ ...+...|.+++......++ + -
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP-----~---s 266 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP-----N---S 266 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC-----C---c
Confidence 334456888888888887654 22111111 1111111 1011222 56678899999999988765 3 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
...++..|+++...|+.++|++.+++++.... ..+....-+...++.++.-.+++++|...+.+...... .-.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-----WSk 339 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQS--EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-----WSK 339 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-----cHH
Confidence 56788999999999999999999998874222 34455566789999999999999999999877766542 223
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+.-....|-++..+|+. +.+....+++...+
T Consensus 340 a~Y~Y~~a~c~~~l~~~--~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGRE--EEAKEHKKEAEELF 370 (468)
T ss_pred HHHHHHHHHHHHhhccc--hhhhhhHHHHHHHH
Confidence 44445577777778876 34444334443333
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.66 E-value=11 Score=35.71 Aligned_cols=110 Identities=21% Similarity=0.090 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH----HHH-----------H-HHhhHHHHHHhcCCHHHHHHHHHH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR----ILL-----------L-KLQLLHERSLHRGHLKLAQKVCDE 541 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~----~~~-----------l-~l~l~~~~al~~G~~~~A~~~l~~ 541 (775)
.+++.|......|+...+...++++...++..--.. .|. + .+.-....+...|++.+|..++.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345556666778899999999999998775421100 111 1 111122567778888888888888
Q ss_pred HhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh-hcccch
Q 004081 542 LGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY-KFNLQV 595 (775)
Q Consensus 542 ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~-~~gd~~ 595 (775)
++.+ ||. .-.+...+..++...|++.+|++.+++...... +.|..+
T Consensus 88 ~l~~-------dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 88 ALAL-------DPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHH-------STT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHhc-------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 8886 333 234567778888888888888888888766555 345433
No 222
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.64 E-value=5.2 Score=50.83 Aligned_cols=136 Identities=11% Similarity=0.079 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
-.++..|...|...+.+++|.++|+...+.|. .....|.... +-.+.+.+-.+|+.++.+++.-.+...
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~----~fLl~~ne~~aa~~lL~rAL~~lPk~e----- 1598 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYA----DFLLRQNEAEAARELLKRALKSLPKQE----- 1598 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHH----HHHhcccHHHHHHHHHHHHHhhcchhh-----
Confidence 46778889999999999999999999999996 3445787765 346788888999999999998655322
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
..+...--|.+-...||.+.+...++..+... +-+.++|+....--.+.|...-...+++|++.+..
T Consensus 1599 -Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay------PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1599 -HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY------PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred -hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC------ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 45677788999999999999999999888632 33466677777777788999999999999887764
No 223
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=91.61 E-value=19 Score=41.12 Aligned_cols=174 Identities=16% Similarity=-0.021 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhH--HHHHHHHHHHHHhcCCh-------hhHHHHHHHHHHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN--ASVLLLLAEIHKKSGNA-------VLGIPYALASLSFCQL 630 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~--a~aLl~lA~i~~~~G~~-------~~Al~~l~~AL~la~~ 630 (775)
...++|++..-.|||+-|...++.+...+.. |..+. +-++=..|....-.|.. +....++..|+.....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~--Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN--DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh--chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 4567999999999999999999988887653 33332 33444444444444433 3556777777777665
Q ss_pred -----hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-hcCCHHHHHHHHHHHHHhh--hcCCCC-CCCCC
Q 004081 631 -----LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL-GHGGLELRARAFIAEAKCL--LSDPSF-SVSQN 701 (775)
Q Consensus 631 -----~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il-~~G~~~l~A~a~~~LAr~~--lA~~~~-~~~g~ 701 (775)
...+....++.+..++++...|.. .+|...+-+....++ ..-.....|..+-.+|.|+ +....+ ....+
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~--~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r 365 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGY--WEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR 365 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchh
Confidence 345568888999999999999986 566665555555543 1111112667777788888 542111 12234
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 004081 702 PEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 737 (775)
Q Consensus 702 ~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~ 737 (775)
..++.-++--|-..|.+.+-+....+++..--.+|.
T Consensus 366 ~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 366 FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 556666666666667777766666666665555555
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=2.9 Score=45.01 Aligned_cols=137 Identities=21% Similarity=0.098 Sum_probs=86.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
-.+..|++.+|..++.+++...+. . .++...++++++..|+.++|...+...-...+ ......+...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-------~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-----~~~~~~l~a~ 209 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-------N-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-----DKAAHGLQAQ 209 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-------c-chHHHHHHHHHHHcCChHHHHHHHHhCcccch-----hhHHHHHHHH
Confidence 567899999999999999997442 2 56889999999999999999999976543111 1111111111
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
-.++.+.....+....- ++..-+..-..+.+.||..+...|+. ++|+++|-..|+.-+...+-..+=+..
T Consensus 210 i~ll~qaa~~~~~~~l~-------~~~aadPdd~~aa~~lA~~~~~~g~~--e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 210 IELLEQAAATPEIQDLQ-------RRLAADPDDVEAALALADQLHLVGRN--EAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred HHHHHHHhcCCCHHHHH-------HHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 12222222222111111 11111112235566799999999999 999999988888776665544444433
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.21 E-value=0.71 Score=52.40 Aligned_cols=69 Identities=16% Similarity=-0.050 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhh
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVM 545 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L 545 (775)
+...+++|+|..+...|+|++|++.+++++++-|.....+.....++. .+...|++++|.+.+++++.+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAc---aya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKAC---CHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999998865443222223332 577899999999999999885
No 226
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=17 Score=40.83 Aligned_cols=178 Identities=17% Similarity=0.085 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc---cchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN---LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g---d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
.+...++....++...+|.+|.+..+..+.-..... .....++.+.-++.+|...|+...-...+..-+..+.-.++
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Confidence 344445555556777899999998887765322211 12234777888889999999966556666666777766678
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-hHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQAL-PLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aL-p~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
....+..++.|-..++.-+. |++|-.+.-..- |- ..+-.+.||.++-+|+.... ++++..|.+++-+|
T Consensus 205 ~e~qavLiN~LLr~yL~n~l--ydqa~~lvsK~~~pe---~~snne~ARY~yY~GrIkai------qldYssA~~~~~qa 273 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKL--YDQADKLVSKSVYPE---AASNNEWARYLYYLGRIKAI------QLDYSSALEYFLQA 273 (493)
T ss_pred chhHHHHHHHHHHHHhhhHH--HHHHHHHhhcccCcc---ccccHHHHHHHHHHhhHHHh------hcchhHHHHHHHHH
Confidence 88888888878777765554 488888765542 22 22334899999999999998 99999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHH
Q 004081 713 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 713 l~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A 745 (775)
..-.-......-...|.-.+-.+-.-+|+.+++
T Consensus 274 ~rkapq~~alGf~q~v~k~~ivv~ll~geiPer 306 (493)
T KOG2581|consen 274 LRKAPQHAALGFRQQVNKLMIVVELLLGEIPER 306 (493)
T ss_pred HHhCcchhhhhHHHHHHHHHHHHHHHcCCCcch
Confidence 876655444445555666666677778887765
No 227
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.00 E-value=22 Score=40.69 Aligned_cols=198 Identities=14% Similarity=0.008 Sum_probs=136.4
Q ss_pred HhcCHHHHHHHHHHHHHHhhhcCchHHHHHH----HhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHH
Q 004081 488 VFKGYKEAFSALKIAEEKFLSVSKSRILLLK----LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 563 (775)
Q Consensus 488 ~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~----l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~ 563 (775)
..|+.+.-.++.+.|....|.....+.|..- +.......+...|...+++++..++.+.+. ..-.-+..++.
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH----kkFtFaKiWlm 409 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH----KKFTFAKIWLM 409 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc----ccchHHHHHHH
Confidence 4588999999999999888876665555431 111113567788999999999999998552 11224577888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 004081 564 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 643 (775)
Q Consensus 564 ~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 643 (775)
-|...++.-+.+.|...+..++..|-+... ++.++ .+-.+.+++++...++.+=|+..- ....+-..
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG~cPK~Kl----Fk~YI---elElqL~efDRcRkLYEkfle~~P------e~c~~W~k 476 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIGKCPKDKL----FKGYI---ELELQLREFDRCRKLYEKFLEFSP------ENCYAWSK 476 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhccCCchhH----HHHHH---HHHHHHhhHHHHHHHHHHHHhcCh------HhhHHHHH
Confidence 899999999999999999999876654222 22222 234577788888888887776553 34567778
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 644 LAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 644 La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
.|++-..+|+. ++|+.+++-++.+-. ...+.+--.+|..+- ++ .|..++|...+++-++
T Consensus 477 yaElE~~Lgdt--dRaRaifelAi~qp~-ldmpellwkaYIdFE---i~------~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 477 YAELETSLGDT--DRARAIFELAISQPA-LDMPELLWKAYIDFE---IE------EGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHhhhH--HHHHHHHHHHhcCcc-cccHHHHHHHhhhhh---hh------cchHHHHHHHHHHHHH
Confidence 99999999999 999999998865532 233333333433331 12 5667777777666554
No 228
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.87 E-value=0.29 Score=34.46 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=27.7
Q ss_pred hHHhhHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 004081 223 IALLCLGMMHFHFGHPKQALDVLTEAVCLSQQ 254 (775)
Q Consensus 223 yAlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe 254 (775)
.+..++|.+|...|++++|+..+++||.+-.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 36789999999999999999999999987543
No 229
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=90.87 E-value=3.2 Score=53.67 Aligned_cols=150 Identities=15% Similarity=-0.008 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC--------------------
Q 004081 595 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-------------------- 654 (775)
Q Consensus 595 ~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~-------------------- 654 (775)
+...|....+|..++..|++..|+.++.+|+.+++..+|..+.|.|+=.++-+.+-++..
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 456788999999999999999999999999999999999999999988777554422211
Q ss_pred -----------------------------------------hHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcC
Q 004081 655 -----------------------------------------HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 693 (775)
Q Consensus 655 -----------------------------------------~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~ 693 (775)
.+++|+.+|..+.....+.-.....+.+..-+++.+.+.
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 235556666665422111112222333333333333331
Q ss_pred C---------------CCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHH
Q 004081 694 P---------------SFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 694 ~---------------~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A 745 (775)
. ..... ...++.+++.+|+..--..=....++.++..+|.+|..+|-.-.+
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~-~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNIS-SRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred hcccchhhhhccccccccCCC-CHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence 1 00001 567888899999886554456888889999999999999976543
No 230
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.86 E-value=4.1 Score=41.60 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=78.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
..+..|+|.+|..-|..++.+.+... ...+..++.+.+.+++.++.+..|++-...++++ .....+++.++
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~kAl~RR 174 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEKALERR 174 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHHHHHHH
Confidence 56788999999999999998876554 3456778889999999999999999999998873 33446778899
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la 628 (775)
|.+|.+...|+.|+..+.+-+++-
T Consensus 175 Aeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC
Confidence 999999999999999998877764
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.77 E-value=26 Score=37.55 Aligned_cols=225 Identities=16% Similarity=0.068 Sum_probs=117.4
Q ss_pred CchHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhhc---Cc-h-HH---HHHHHhhHHHHHHhcCCHHHHHHHHHH
Q 004081 471 SLSDAALAHVKLIQHLAVFK-GYKEAFSALKIAEEKFLSV---SK-S-RI---LLLKLQLLHERSLHRGHLKLAQKVCDE 541 (775)
Q Consensus 471 ~~e~~a~al~~LA~~la~~G-~y~eAl~~L~~a~~~f~~~---~~-~-~~---~~l~l~l~~~~al~~G~~~~A~~~l~~ 541 (775)
..+..+..+.+.|..+..++ +|++|...|+++.+.+... .. . .. ....++.+...++.-+.++...+..+-
T Consensus 30 ~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~ 109 (278)
T PF08631_consen 30 MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 45677888999999999999 9999999999999987441 11 1 11 111233333556666666554443332
Q ss_pred HhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH-hcCChhhHHHH
Q 004081 542 LGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK-KSGNAVLGIPY 620 (775)
Q Consensus 542 ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~-~~G~~~~Al~~ 620 (775)
+..+-.+.+ + .+........++...++.+++.+.+.+++.... .....+-..+..+.. ..-.+..+...
T Consensus 110 l~~l~~e~~--~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-----~~e~~~~~~l~~i~~l~~~~~~~a~~~ 179 (278)
T PF08631_consen 110 LRLLESEYG--N---KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-----HSESNFDSILHHIKQLAEKSPELAAFC 179 (278)
T ss_pred HHHHHHhCC--C---CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-----cccchHHHHHHHHHHHHhhCcHHHHHH
Confidence 222212222 3 455666777777779999999999998886321 122222222222211 11123345555
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHHHHhHHHhc----CCHHHHHHHHHH---HHHhhh
Q 004081 621 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMA--SNLIQQALPLILGH----GGLELRARAFIA---EAKCLL 691 (775)
Q Consensus 621 l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~A--l~lLe~aLp~il~~----G~~~l~A~a~~~---LAr~~l 691 (775)
+...+.-.-..+-+. .....+ +-.+|......+.... .+-+++.+..+... -+......++.+ -|.-+.
T Consensus 180 ld~~l~~r~~~~~~~-~~e~~v-l~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~ 257 (278)
T PF08631_consen 180 LDYLLLNRFKSSEDQ-WLEKLV-LTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHY 257 (278)
T ss_pred HHHHHHHHhCCChhH-HHHHHH-HHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 554444332222221 223223 4556654443110122 44444444433322 222222222222 122222
Q ss_pred cCCCCCCCCChHHHHHHHHHHH
Q 004081 692 SDPSFSVSQNPEAVLDPLRQAS 713 (775)
Q Consensus 692 A~~~~~~~g~~~~Al~~L~~Al 713 (775)
. .+++..|+.+++-|+
T Consensus 258 ~------~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 258 K------AKNYDEAIEWYELAL 273 (278)
T ss_pred h------hcCHHHHHHHHHHHH
Confidence 3 688999999998776
No 232
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.58 E-value=0.44 Score=34.74 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=27.5
Q ss_pred hHHhhHHHHHHhhCChHHHHHHHHHHHHHHHHc
Q 004081 223 IALLCLGMMHFHFGHPKQALDVLTEAVCLSQQH 255 (775)
Q Consensus 223 yAlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe~ 255 (775)
.++.|||.++...|++++|+..+++++.+.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 478899999999999999999999999998864
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.55 E-value=3 Score=40.26 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=63.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|.+.++.+..-++. ..-...+.+.++.++...|+|.+|+..+++.+++.-. ....-.++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~-----g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~vdYa~Y~ 89 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPF-----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPNVDYAYYM 89 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCCccHHHHH
Confidence 3688999999999999999886552 2234578899999999999999999999998875322 2233557777
Q ss_pred HHHHHHhcCC
Q 004081 604 LAEIHKKSGN 613 (775)
Q Consensus 604 lA~i~~~~G~ 613 (775)
+|.++.....
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8877776654
No 234
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.24 E-value=2.1 Score=46.94 Aligned_cols=61 Identities=15% Similarity=0.024 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 601 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 601 Ll~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
.+.+|.+|...-.+++|+..+.+.|.-..+ ..+.- +.+|-++..+.-+ +-+.+++.--|.+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-----y~alN-Vy~ALCyyKlDYy--dvsqevl~vYL~q 214 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPE-----YIALN-VYMALCYYKLDYY--DVSQEVLKVYLRQ 214 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChh-----hhhhH-HHHHHHHHhcchh--hhHHHHHHHHHHh
Confidence 456677777666777777777666554432 22332 3367777777766 6666666555443
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.07 E-value=3.7 Score=39.06 Aligned_cols=107 Identities=17% Similarity=0.058 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc-----ccch-----------hHHHHHHHHHHHHHhcCChhhHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-----NLQV-----------ENASVLLLLAEIHKKSGNAVLGIPY 620 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~-----gd~~-----------~~a~aLl~lA~i~~~~G~~~~Al~~ 620 (775)
.++.....+......|+...+.+.+++++.+++.. .... ....++..++..+...|++..|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 55666667777788888899999998888777621 1101 1234688889999999999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 621 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 621 l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
+.+++.+-- +- -.+...|-.++...|+. .+|++.++.+-....
T Consensus 85 ~~~~l~~dP-----~~-E~~~~~lm~~~~~~g~~--~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 85 LQRALALDP-----YD-EEAYRLLMRALAAQGRR--AEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHST-----T--HHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-----CC-HHHHHHHHHHHHHCcCH--HHHHHHHHHHHHHHH
Confidence 999887752 11 23445577888899998 999999999977665
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=11 Score=41.29 Aligned_cols=171 Identities=11% Similarity=-0.007 Sum_probs=119.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHH
Q 004081 485 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 564 (775)
Q Consensus 485 ~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~ 564 (775)
.++.+|++.+|-..-+..+.-||. -++.....++.+++.|+...-...+++...-... |......+.-..
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~----dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA----DLPCYSYVHGMY 181 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCC----CCcHHHHHHHHH
Confidence 467789999998888877777763 2344444557899999999999888888764321 433345555667
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 004081 565 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 644 (775)
Q Consensus 565 a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 644 (775)
+--+...|-|++|.+..++++++-+ .-..+.-.+|.|+...|++.++.....+.-...+. -....++-.-+-
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~------~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~ 253 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINR------FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHT 253 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCC------cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHH
Confidence 7778999999999999999986432 22456667899999999999998887765555542 123333444445
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhcCC
Q 004081 645 AELWLSFGPNHAKMASNLIQQALPLILGHGG 675 (775)
Q Consensus 645 a~l~l~lG~~~f~~Al~lLe~aLp~il~~G~ 675 (775)
|-.++.-+. ++.|+++++.-+.--++-.|
T Consensus 254 Al~~iE~ae--ye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 254 ALFHIEGAE--YEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HHhhhcccc--hhHHHHHHHHHHHHHhhccc
Confidence 555554444 59999999887665555544
No 237
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.55 E-value=0.67 Score=32.45 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=28.2
Q ss_pred HHhhHHHHHHhhCChHHHHHHHHHHHHHHH
Q 004081 224 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQ 253 (775)
Q Consensus 224 AlLnlA~lh~~FG~~~~A~~al~EAi~~Aq 253 (775)
++.++|.++...|++++|+..+++|+.+.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 568899999999999999999999999987
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=6 Score=41.99 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.+...++..+...|+|.-....+....+..++....-+. +++ ...+.-||...|...+++.......+. ....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s--~Lg---r~~MQ~GD~k~a~~yf~~vek~~~kL~--~~q~ 250 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLS--GLG---RISMQIGDIKTAEKYFQDVEKVTQKLD--GLQG 250 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHH--HHH---HHHHhcccHHHHHHHHHHHHHHHhhhh--ccch
Confidence 445556667777899999999999988866544332111 222 467888999999999997766544444 3335
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
...+..+.+.+++...+|.+|.....+++. .....+.+-+++|.|..-.|+...|+....+++.+--
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~------~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILR------MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccc------cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 667788889999999999999998887775 2233355677888888889999999888887776653
No 239
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.17 E-value=0.81 Score=33.29 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 599 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 599 ~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
.++..+|.+|...|++++|+.++.+++.+.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 45556666666666666666666666666543
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.11 E-value=29 Score=38.99 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=101.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHhhcccchhHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA---ANQFSEAAAVAHSLFCMCYKFNLQVENASVL 601 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~---~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aL 601 (775)
-++.-.+|+.-..+.+.+..+ + ..+......+....|..+.+ .|+.++|++.+..++. ........++
T Consensus 150 SyRdiqdydamI~Lve~l~~~-p---~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-----~~~~~~~d~~ 220 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEAL-P---TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-----SDENPDPDTL 220 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhcc-C---ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-----ccCCCChHHH
Confidence 455667999999999988775 2 11222356778888999999 9999999999998765 3445557788
Q ss_pred HHHHHHHH----hcC-----ChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH----h
Q 004081 602 LLLAEIHK----KSG-----NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL----P 668 (775)
Q Consensus 602 l~lA~i~~----~~G-----~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aL----p 668 (775)
.++|.||- .++ ...+|+..+.++-.+-. . ...-.+++.++...|.. .+...-++.+- .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~----~---~Y~GIN~AtLL~~~g~~--~~~~~el~~i~~~l~~ 291 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP----D---YYSGINAATLLMLAGHD--FETSEELRKIGVKLSS 291 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc----c---ccchHHHHHHHHHcCCc--ccchHHHHHHHHHHHH
Confidence 88888883 221 22444555555544431 1 23334566666777775 23332233332 2
Q ss_pred HHHhcCCHHHHHHH--HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 669 LILGHGGLELRARA--FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 669 ~il~~G~~~l~A~a--~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
.+.+.|+....... +-+++.+.+. .|++++|+.++++++..
T Consensus 292 llg~kg~~~~~~dYWd~ATl~Ea~vL------~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 292 LLGRKGSLEKMQDYWDVATLLEASVL------AGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHhhccccccccHHHHHHHHHHHHH------cCCHHHHHHHHHHHhhc
Confidence 22223332222221 2244566666 89999999999998754
No 241
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.01 E-value=35 Score=36.40 Aligned_cols=167 Identities=20% Similarity=0.061 Sum_probs=86.0
Q ss_pred HhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHH
Q 004081 488 VFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 567 (775)
Q Consensus 488 ~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~l 567 (775)
.+++|++|.++|-+....+-+ .|++..|-++..-+.......+ ++... +..-+++.+
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~--------------------~~Q~~sg~DL~~lliev~~~~~--~~~~~-~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLK--------------------HGQYGSGADLALLLIEVYEKSE--DPVDE-ESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHH--------------------TT-HHHHHHHHHHHHHHHHHTT-----SH-HHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHH--------------------CCCcchHHHHHHHHHHHHHHcC--CCCCH-HHHHHHHHH
Confidence 578899999998876655433 3333333333333333322211 11111 123344555
Q ss_pred HHHcCChH-HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 004081 568 LLAANQFS-EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 646 (775)
Q Consensus 568 l~~~Gd~~-eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 646 (775)
....+.-+ +=.+.+++++......+...+....+..+|.++.+.|++..|..|+..+-.- .+.+...+-.
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~---------~~~~~~~ll~ 129 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP---------SAFAYVMLLE 129 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH---------HHHHHHHHHH
T ss_pred HHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh---------hHHHHHHHHH
Confidence 54444333 3446677777777555667888999999999999999999999998644211 1122222334
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHH
Q 004081 647 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 688 (775)
Q Consensus 647 l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr 688 (775)
.|...|.+ .++--.+-++.=..+..++....-.++..+.+
T Consensus 130 ~~~~~~~~--~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 130 EWSTKGYP--SEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHTSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCC--cchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555655 44444444444444455555544444444443
No 242
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.91 E-value=8.8 Score=41.40 Aligned_cols=91 Identities=20% Similarity=0.092 Sum_probs=61.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHhhcccchhHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN---QFSEAAAVAHSLFCMCYKFNLQVENASV 600 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~G---d~~eAl~~l~~aL~~~~~~gd~~~~a~a 600 (775)
..++..|++..|...|.++..+.. | ..+.+...++++.... ...++.+++++++. ....++++
T Consensus 164 ~~ym~~~~~~~A~~AY~~A~rL~g-----~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~------~D~~~ira 229 (287)
T COG4235 164 RAYMALGRASDALLAYRNALRLAG-----D---NPEILLGLAEALYYQAGQQMTAKARALLRQALA------LDPANIRA 229 (287)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh------cCCccHHH
Confidence 467788888888888888877633 2 3445555566554443 34566677777764 34566777
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 601 LLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 601 Ll~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+..+|..+...|+|..|......-|+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888888888888888877776666554
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.87 E-value=0.89 Score=31.92 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 599 SVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 599 ~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
+++..+|.++...|+++.|+..+.+|+.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666677777777777777777766665
No 244
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.77 E-value=21 Score=33.58 Aligned_cols=114 Identities=17% Similarity=0.045 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccch-----h-HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV-----E-NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~-----~-~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
+...+..+.-.+.-|-|++|......+++..+...... + .+-++-.++..+..+|+|++++.-..+||....+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 34445566677888999999999999999888643221 1 24468889999999999999999999999988655
Q ss_pred CCc-----HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc
Q 004081 632 NLD-----LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 673 (775)
Q Consensus 632 g~~-----~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~ 673 (775)
|.- .+-..+.+.-|..+..+|.+ ++|+.-++.+-++|-+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~--~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRK--EEALKEFRMAGEMIAER 133 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHH-
T ss_pred cccccccchhHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHH
Confidence 542 22344556677778889999 99999999998887543
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.74 E-value=22 Score=33.67 Aligned_cols=209 Identities=22% Similarity=0.105 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
.......+..+...|.+..+...+....... ............. ......+++..+...+......... +
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELE-LLPNLAEALLNLG---LLLEALGKYEEALELLEKALALDPD----P-- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-hccchHHHHHHHH---HHHHHHhhHHHHHHHHHHHHcCCCC----c--
Confidence 4556677777788899999988888776530 0011111111111 3556677788999888888775221 1
Q ss_pred hHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 556 LKTEASLRHAR-TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 556 ~~~~a~~~~a~-ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
......... ++...|+++.|...+.+++. ... ............+..+...+++..++..+.+++......
T Consensus 129 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 200 (291)
T COG0457 129 --DLAEALLALGALYELGDYEEALELYEKALE-LDP--ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD--- 200 (291)
T ss_pred --chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCC--CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc---
Confidence 122333333 88999999999999999854 110 013445566666666888999999999999998887643
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
...+...++..+...|.. .+|...+..++..... ....+..++..+.. .+....+...+.++..
T Consensus 201 --~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 201 --DAEALLNLGLLYLKLGKY--EEALEYYEKALELDPD------NAEALYNLALLLLE------LGRYEEALEALEKALE 264 (291)
T ss_pred --chHHHHHhhHHHHHcccH--HHHHHHHHHHHhhCcc------cHHHHhhHHHHHHH------cCCHHHHHHHHHHHHH
Confidence 345667788888888876 8999999888777644 33334444433334 5677788888888876
Q ss_pred HHHh
Q 004081 715 ELQV 718 (775)
Q Consensus 715 ~f~~ 718 (775)
....
T Consensus 265 ~~~~ 268 (291)
T COG0457 265 LDPD 268 (291)
T ss_pred hCcc
Confidence 6544
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=88.43 E-value=23 Score=40.60 Aligned_cols=110 Identities=8% Similarity=0.054 Sum_probs=72.3
Q ss_pred HHhhhcCCCCchHHHHHHHHHHHHHHHh---cC------HHHHHHHHHHHHHHhhhcCchH-HHHHHHhhHHHHHHhcCC
Q 004081 462 YATCFSDGSSLSDAALAHVKLIQHLAVF---KG------YKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRGH 531 (775)
Q Consensus 462 ~~~~~~~~a~~e~~a~al~~LA~~la~~---G~------y~eAl~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G~ 531 (775)
|.+|.....-.-+.+.+++-+|..++.. |- -.+|.++.+.|.++-+ .+.. .+.+. ......|+
T Consensus 281 f~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~--~Da~a~~~~g-----~~~~~~~~ 353 (458)
T PRK11906 281 FDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT--VDGKILAIMG-----LITGLSGQ 353 (458)
T ss_pred HHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC--CCHHHHHHHH-----HHHHhhcc
Confidence 4455533333336678888888777533 22 2233333433333321 1221 22222 24567788
Q ss_pred HHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 532 LKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 532 ~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
++.|...++++..+.+ + .+.+++..+.++...|+.++|++.++++++
T Consensus 354 ~~~a~~~f~rA~~L~P-----n---~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHST-----D---IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCC-----c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999999844 3 577899999999999999999999999986
No 247
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.34 E-value=1.2 Score=34.15 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHH
Q 004081 641 TLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 688 (775)
Q Consensus 641 l~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr 688 (775)
.+.||..|..+|+. +.|+.++++++. .|+...+..|..+|.+
T Consensus 2 kLdLA~ayie~Gd~--e~Ar~lL~evl~----~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 2 KLDLARAYIEMGDL--EGARELLEEVIE----EGDEAQRQEARALLAQ 43 (44)
T ss_pred chHHHHHHHHcCCh--HHHHHHHHHHHH----cCCHHHHHHHHHHHhc
Confidence 46799999999999 999999999973 6899999998877753
No 248
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.16 E-value=26 Score=36.36 Aligned_cols=221 Identities=15% Similarity=0.013 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHhCcHHHHHH-HHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHH
Q 004081 436 GSSYLLRATAWEAYGSAPLTRV-NTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI 514 (775)
Q Consensus 436 g~~~~l~aalW~~~G~~~La~l-~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~ 514 (775)
...+-.++.+++.+|.-.+++. .++.. +.--+...+++-||..+...|+|+.|.+.++...+.-|... .
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaL-------ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---Y 134 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQAL-------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---Y 134 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhh-------hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---H
Confidence 3456678999999999999885 12211 01114467889999999999999999999998877655432 3
Q ss_pred HHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc-c
Q 004081 515 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-L 593 (775)
Q Consensus 515 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g-d 593 (775)
..+.-++ ...+-|||.-|.+-+.+.-.- ++.||-......++. ..-+..+|..-+.+- +.... .
T Consensus 135 a~lNRgi---~~YY~gR~~LAq~d~~~fYQ~----D~~DPfR~LWLYl~E-----~k~dP~~A~tnL~qR---~~~~d~e 199 (297)
T COG4785 135 AHLNRGI---ALYYGGRYKLAQDDLLAFYQD----DPNDPFRSLWLYLNE-----QKLDPKQAKTNLKQR---AEKSDKE 199 (297)
T ss_pred HHhccce---eeeecCchHhhHHHHHHHHhc----CCCChHHHHHHHHHH-----hhCCHHHHHHHHHHH---HHhccHh
Confidence 3333222 235689999998877666552 445654332222221 233677777544332 22222 2
Q ss_pred chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc
Q 004081 594 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 673 (775)
Q Consensus 594 ~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~ 673 (775)
..+.--|...+|.|-.+. -..++......--.+|. ...++..-||..++.+|.. .+|..++.-++.---
T Consensus 200 ~WG~~iV~~yLgkiS~e~-l~~~~~a~a~~n~~~Ae------~LTEtyFYL~K~~l~~G~~--~~A~~LfKLaiannV-- 268 (297)
T COG4785 200 QWGWNIVEFYLGKISEET-LMERLKADATDNTSLAE------HLTETYFYLGKYYLSLGDL--DEATALFKLAVANNV-- 268 (297)
T ss_pred hhhHHHHHHHHhhccHHH-HHHHHHhhccchHHHHH------HHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhH--
Confidence 333344555555443211 00111111111122222 3456778899999999998 999999987765421
Q ss_pred CCHHHHHHHHHHHHHhhhc
Q 004081 674 GGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 674 G~~~l~A~a~~~LAr~~lA 692 (775)
-+...--.|++-|++..-.
T Consensus 269 ynfVE~RyA~~EL~~l~q~ 287 (297)
T COG4785 269 YNFVEHRYALLELSLLGQD 287 (297)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 1222333456666654443
No 249
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.15 E-value=4.9 Score=39.60 Aligned_cols=89 Identities=13% Similarity=-0.061 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
++....++..+...-...++.+++..+|....-.-|...... + ..+ .+++.+|+|.+|..+++.+..
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~--~-~~~---~l~i~r~~w~dA~rlLr~l~~------- 72 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELD--L-FDG---WLHIVRGDWDDALRLLRELEE------- 72 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHH--H-HHH---HHHHHhCCHHHHHHHHHHHhc-------
Confidence 456667778888888888999999999886665555433221 1 111 378999999999999999866
Q ss_pred CChhhHHHHHHHHHHHHHHcCCh
Q 004081 552 VDMDLKTEASLRHARTLLAANQF 574 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~ 574 (775)
++.....+.-+++.++..+||.
T Consensus 73 -~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 73 -RAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred -cCCCChHHHHHHHHHHHHcCCh
Confidence 2233456677778888777764
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.15 E-value=31 Score=34.70 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=106.8
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHh------hhcCCC----CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc
Q 004081 442 RATAWEAYGSAPLTRVNTLIYAT------CFSDGS----SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK 511 (775)
Q Consensus 442 ~aalW~~~G~~~La~l~~~i~~~------~~~~~a----~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~ 511 (775)
...+|.++|-..+.-...-++-+ .+.+.+ +.+.+. -+.-++..|..++|+.-|......- .+.
T Consensus 19 ~~~lw~rfgp~v~giailvVlGtag~~gy~yw~~s~as~sgd~fl-----aAL~lA~~~k~d~Alaaf~~lektg--~g~ 91 (221)
T COG4649 19 AKTLWKRFGPAVIGIAILVVLGTAGYVGYTYWQTSRASKSGDAFL-----AALKLAQENKTDDALAAFTDLEKTG--YGS 91 (221)
T ss_pred HHHHHHHcccHHHHHHHHHHhccccceeeehhcccccccchHHHH-----HHHHHHHcCCchHHHHHHHHHHhcC--CCc
Confidence 36899999987776543322211 122222 222222 2334667899999999998766421 121
Q ss_pred -hHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 004081 512 -SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK 590 (775)
Q Consensus 512 -~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~ 590 (775)
.....++.. ......|+-..|...++.+..-.+.. ..++-.+.++-+.+++..|-|++-...++.+-.
T Consensus 92 YpvLA~mr~a---t~~a~kgdta~AV~aFdeia~dt~~P----~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---- 160 (221)
T COG4649 92 YPVLARMRAA---TLLAQKGDTAAAVAAFDEIAADTSIP----QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---- 160 (221)
T ss_pred chHHHHHHHH---HHHhhcccHHHHHHHHHHHhccCCCc----chhhHHHHHHHHHHHhccccHHHHHHHhhhccC----
Confidence 112222222 35778999999999999987743211 112356788889999999999998888866542
Q ss_pred cccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 591 FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 591 ~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
.....+..+.-.+|..-.+.|++..|...+.+-..
T Consensus 161 -d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 161 -DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred -CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22445555666777788999999999998876544
No 251
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.35 E-value=5.6 Score=38.70 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
.....++..+.......++.+++..+|....-.-|+...-. +. .. .+++.+|+|.+|..+++++..
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d--~~-dg---~l~i~rg~w~eA~rvlr~l~~-------- 72 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELD--MF-DG---WLLIARGNYDEAARILRELLS-------- 72 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccc--hh-HH---HHHHHcCCHHHHHHHHHhhhc--------
Confidence 34556666677777778999999999987766655443322 11 11 378999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHHcCCh
Q 004081 553 DMDLKTEASLRHARTLLAANQF 574 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~ 574 (775)
+......+.-+++.++..+||.
T Consensus 73 ~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 73 SAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCCchHHHHHHHHHHHhcCCh
Confidence 3323456677778888777764
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.26 E-value=1.3 Score=30.80 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 599 SVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 599 ~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
.++..+|.++...|++.+|+..+.+|+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.22 E-value=1.1 Score=33.80 Aligned_cols=28 Identities=25% Similarity=0.142 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
.+++.++..+...|++++|.+.++++++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567778888888888888888888776
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.21 E-value=1.5 Score=30.41 Aligned_cols=32 Identities=25% Similarity=0.053 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 508 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~ 508 (775)
.++..+|..+...|+|++|...++++..+.|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 56788999999999999999999998887763
No 255
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=9.1 Score=41.28 Aligned_cols=100 Identities=16% Similarity=-0.018 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 558 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~ 558 (775)
..-||..+..+|+++.|...+.+|.++.+...+.. ......+ ...-..-.-.++..++++++.+ |+. ..
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~-~g~aeaL--~~~a~~~~ta~a~~ll~~al~~-------D~~-~i 227 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEIL-LGLAEAL--YYQAGQQMTAKARALLRQALAL-------DPA-NI 227 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHH-HHHHHHH--HHhcCCcccHHHHHHHHHHHhc-------CCc-cH
Confidence 55689999999999999999999998875332211 1112222 1122344568899999999986 322 46
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
.++..++..+...|||.+|....+.++....
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999987443
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.07 E-value=4.6 Score=39.78 Aligned_cols=77 Identities=18% Similarity=0.102 Sum_probs=58.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
...+..++.++++.++.-+..+.+. ..+.....+.+++.+|++.+|+.+++++.. .......+.-+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~--------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------~~~~~p~~kAL 83 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPE--------FPELDLFDGWLHIVRGDWDDALRLLRELEE------RAPGFPYAKAL 83 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHhCCHHHHHHHHHHHhc------cCCCChHHHHH
Confidence 5788999999999999999888553 457788899999999999999999998653 33333444444
Q ss_pred HHHHHHhcCCh
Q 004081 604 LAEIHKKSGNA 614 (775)
Q Consensus 604 lA~i~~~~G~~ 614 (775)
++.++...|++
T Consensus 84 lA~CL~~~~D~ 94 (160)
T PF09613_consen 84 LALCLYALGDP 94 (160)
T ss_pred HHHHHHHcCCh
Confidence 55556666665
No 257
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.05 E-value=5.7 Score=50.27 Aligned_cols=187 Identities=14% Similarity=-0.034 Sum_probs=135.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc--ccchhHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVL 601 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~--gd~~~~a~aL 601 (775)
...+..|.|.+|.+ +.+++.++..+-+.--.-....+..++.++.+.|++++|+..-..+...+.+. -+....++.+
T Consensus 940 q~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 35677888998888 66666665422211111256788899999999999999999998887665542 2455668889
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHH-HhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCC--HH
Q 004081 602 LLLAEIHKKSGNAVLGIPYALASLSFCQ-LLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG--LE 677 (775)
Q Consensus 602 l~lA~i~~~~G~~~~Al~~l~~AL~la~-~~g~-~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~--~~ 677 (775)
..++...........|+..+-+++.+-- ..|- ...-+.+-.++..+++.+++. +.|++.++.++........ ..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~--d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA--DTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH--HHHHHHHHHHHHHHhhhcCccch
Confidence 9999888888888999988888877652 2222 233344556677777666665 9999999999886655433 23
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhc
Q 004081 678 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 719 (775)
Q Consensus 678 l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l 719 (775)
.-+..+..+|+.+-+ .++...|+...+.++.+|...
T Consensus 1097 ~~~~~~~~~a~l~~s------~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1097 ETALSYHALARLFES------MKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred hhhhHHHHHHHHHhh------hHHHHHHHHHHhhHHHHHHHh
Confidence 445567777888887 888889999999999998753
No 258
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.85 E-value=5.2 Score=41.46 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=69.1
Q ss_pred CChHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh-------CCcHHHHHHHHH
Q 004081 572 NQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL-------NLDLLKASATLT 643 (775)
Q Consensus 572 Gd~~eAl~~l~~aL~~~~~~g-d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~-------g~~~~~A~al~~ 643 (775)
.++++|++.+.-++-.+.-.+ +....+...+.+|.+|...|+.+.....+.+|+....+. ........++..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 345566666666654444333 344568889999999999999776666666666655321 234456778888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 644 LAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 644 La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
+|++...+|.. ++|...+..++..-..
T Consensus 171 igeL~rrlg~~--~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNY--DEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCH--HHHHHHHHHHHcCCCC
Confidence 99999999998 9999998888655433
No 259
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.48 E-value=1.6 Score=30.51 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 599 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 599 ~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
+++..+|.++...|+++.|+..+.+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677778888888888888888887777654
No 260
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.36 E-value=5.7 Score=34.42 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
.-....+.-+....+..+|+...+.++... .+...+++++..+.++|...|.+...+.++.+-+++|++..++
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~---~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKI---TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 334445555678889999999999998743 4466789999999999999999999999999999999887654
No 261
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.97 E-value=8.8 Score=39.74 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=60.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc-------ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-------NLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 625 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~-------gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL 625 (775)
++.-.+...+++|+++...|+.......++.++..+.+. ...-....++.++|.+..+.|++++|...+.+.+
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455578889999999999999888888888887766531 1233458899999999999999999999887766
Q ss_pred HHHH
Q 004081 626 SFCQ 629 (775)
Q Consensus 626 ~la~ 629 (775)
..-.
T Consensus 193 ~~~~ 196 (214)
T PF09986_consen 193 GSKK 196 (214)
T ss_pred cCCC
Confidence 5543
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.59 E-value=52 Score=38.18 Aligned_cols=66 Identities=15% Similarity=-0.008 Sum_probs=50.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHH
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 622 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~ 622 (775)
|......+..+++.++.+.|+.+||++.+.+++++.. ......+.-++-+.++..+++..+...+.
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4444567889999999999999999999999987432 22345577777788888888877766553
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=54 Score=36.20 Aligned_cols=161 Identities=12% Similarity=-0.053 Sum_probs=113.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
..+-+|++.+|-...++++.-++ .| ..+.-..-..+...|+...-...+++.+..-. .+.+--..+....
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~P----tD----lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYP----TD----LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMY 181 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCc----hh----hhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHH
Confidence 45789999999999999998433 13 33445556677889999988888888775211 2344446778888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 684 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~ 684 (775)
|-....+|-+..|...+.+|+++-+ ++-...+ .++.|+..-|+. .++.+.....-..-+ . +-.+.+.-|.
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~---~D~Wa~H---a~aHVlem~~r~--Keg~eFM~~ted~Wr-~-s~mlasHNyW 251 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINR---FDCWASH---AKAHVLEMNGRH--KEGKEFMYKTEDDWR-Q-SWMLASHNYW 251 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCC---cchHHHH---HHHHHHHhcchh--hhHHHHHHhcccchh-h-hhHHHhhhhH
Confidence 8889999999999999999998854 3444444 456777777776 888888777654444 2 2234455566
Q ss_pred HHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004081 685 AEAKCLLSDPSFSVSQNPEAVLDPLRQ 711 (775)
Q Consensus 685 ~LAr~~lA~~~~~~~g~~~~Al~~L~~ 711 (775)
.-|-+++. .+.++.|++.+++
T Consensus 252 H~Al~~iE------~aeye~aleIyD~ 272 (491)
T KOG2610|consen 252 HTALFHIE------GAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhhc------ccchhHHHHHHHH
Confidence 67778887 5667777776653
No 264
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=29 Score=37.42 Aligned_cols=137 Identities=14% Similarity=0.016 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCCh
Q 004081 576 EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNH 655 (775)
Q Consensus 576 eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~ 655 (775)
+-++-+++.++..++..-......++.++|+-|.+.++.+.++..+.+.++-+-.+|...-......+||-++ |+.
T Consensus 93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y---~d~- 168 (412)
T COG5187 93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIY---GDR- 168 (412)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhh---ccH-
Confidence 4444455555554444435556888999999999999999999999998888888887766666666677665 443
Q ss_pred HHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHH
Q 004081 656 AKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE 723 (775)
Q Consensus 656 f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~ 723 (775)
.=..+.++.+=|++...||-+.+-+.-.--|--.++ ...+.+|...|-..+..|...+-..
T Consensus 169 -~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~------~RnFkeAa~Ll~d~l~tF~S~El~s 229 (412)
T COG5187 169 -KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMM------RRNFKEAAILLSDILPTFESSELIS 229 (412)
T ss_pred -HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHH------HHhhHHHHHHHHHHhcccccccccc
Confidence 445566677777777777766665543333322222 2344455566666666666555433
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.90 E-value=9.3 Score=44.01 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 558 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~ 558 (775)
..+++..+-.+|-++.|+.+.+....+| +.++..|+++.|.++..++ + ..
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rF-----------------eLAl~lg~L~~A~~~a~~~----------~---~~ 347 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRF-----------------ELALQLGNLDIALEIAKEL----------D---DP 347 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHH-----------------HHHHHCT-HHHHHHHCCCC----------S---TH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHh-----------------HHHHhcCCHHHHHHHHHhc----------C---cH
Confidence 5667777888888888888877777666 6899999999998654433 1 23
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
..+.+++...+..|+++-|.+.+.++-. .. .+.-+|...|+. .-+.+-..+|...|+--..-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~---~L~lLy~~~g~~----~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKD-----------FS---GLLLLYSSTGDR----EKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT------------HH---HHHHHHHHCT-H----HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------cc---ccHHHHHHhCCH----HHHHHHHHHHHHccCHHHHH
Confidence 4788999999999999999998876533 11 233446677775 22333345565555432222
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
.+.+ -+|+. ++..++|.++
T Consensus 410 ~~~~-------~lgd~--~~cv~lL~~~ 428 (443)
T PF04053_consen 410 QAAL-------LLGDV--EECVDLLIET 428 (443)
T ss_dssp HHHH-------HHT-H--HHHHHHHHHT
T ss_pred HHHH-------HcCCH--HHHHHHHHHc
Confidence 2222 25665 6666665554
No 266
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=84.79 E-value=62 Score=36.94 Aligned_cols=127 Identities=15% Similarity=-0.037 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhh-----cccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHH
Q 004081 576 EAAAVAHSLFCMCYK-----FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL-DLLKASATLTLAELWL 649 (775)
Q Consensus 576 eAl~~l~~aL~~~~~-----~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~-~~~~A~al~~La~l~l 649 (775)
+....++.+...+.. ........|+.+..++++...|.+.++...+.+.....-.... +.+.|..+
T Consensus 273 ~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alll-------- 344 (414)
T PF12739_consen 273 EIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLL-------- 344 (414)
T ss_pred cHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHH--------
Confidence 344444444444443 1234577889999999999999998888877776654210000 00011111
Q ss_pred HcCCChHHHHHHHHHHHHhHHH--hcCCHHHHHHHHHHHH-HhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHH
Q 004081 650 SFGPNHAKMASNLIQQALPLIL--GHGGLELRARAFIAEA-KCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL 724 (775)
Q Consensus 650 ~lG~~~f~~Al~lLe~aLp~il--~~G~~~l~A~a~~~LA-r~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~ 724 (775)
+++-..+ ..++... ..+.+..++-.+.+|| .-+.. .|....|+.+|.+|+..|...+|...
T Consensus 345 -------E~~a~~~-~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~------~~~~~~a~rcy~~a~~vY~~~~W~~~ 408 (414)
T PF12739_consen 345 -------EQAAYCY-ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSK------AGQKKHALRCYKQALQVYEGKGWSLI 408 (414)
T ss_pred -------HHHHHhh-cccccCCCCccchhhHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 2222222 0111100 1233456777777776 55555 89999999999999999998887643
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.74 E-value=36 Score=32.13 Aligned_cols=221 Identities=24% Similarity=0.162 Sum_probs=142.7
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 568 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll 568 (775)
.+.+..+...+.......+...... ...... ......+++..+...+...... . ............+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAG-LLLLLA---LALLKLGRLEEALELLEKALEL-E-----LLPNLAEALLNLGLLL 105 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchH-HHHHHH---HHHHHcccHHHHHHHHHHHHhh-h-----hccchHHHHHHHHHHH
Confidence 3455556555555554443210001 011111 3567888999998888887652 0 1112567788889999
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH-HHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 004081 569 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE-IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL 647 (775)
Q Consensus 569 ~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~-i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l 647 (775)
...+++..+++.+...+...... .......+. ++...|++..|...+.+++..... ..........++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 176 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALELDPE---LNELAEALLALGAL 176 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhH
Confidence 99999999999998887632211 222223333 899999999999999999552210 12333444555555
Q ss_pred HHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHH
Q 004081 648 WLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAE 727 (775)
Q Consensus 648 ~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~e 727 (775)
+...|.. +.|...+...+...... ...++..++.++.. .+....++..+..+...... ...
T Consensus 177 ~~~~~~~--~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~~~------~~~ 237 (291)
T COG0457 177 LEALGRY--EEALELLEKALKLNPDD-----DAEALLNLGLLYLK------LGKYEEALEYYEKALELDPD------NAE 237 (291)
T ss_pred HHHhcCH--HHHHHHHHHHHhhCccc-----chHHHHHhhHHHHH------cccHHHHHHHHHHHHhhCcc------cHH
Confidence 6677777 99999999998887553 44566677777777 77888899999988877655 445
Q ss_pred HHHHHHHHHHhcCCHHHHHH
Q 004081 728 AFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 728 vl~~LA~l~~~lGd~~~A~~ 747 (775)
....++..+...|..+.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 238 ALYNLALLLLELGRYEEALE 257 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHH
Confidence 56666666666665666544
No 268
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=95 Score=36.71 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=159.5
Q ss_pred hhHhhhhHHHHHHHHHHHHhCcHHHHHH-HHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh
Q 004081 430 SVLQLVGSSYLLRATAWEAYGSAPLTRV-NTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEA--FSALKIAEEKF 506 (775)
Q Consensus 430 ~l~~l~g~~~~l~aalW~~~G~~~La~l-~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eA--l~~L~~a~~~f 506 (775)
++..-+..-...-+-+....|.+.-|.- +..+......|.. -.+++.+||...-- ...|-+. +...+.....+
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~---~~Av~~NNLva~~~-d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP---SLAVAVNNLVALSK-DQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch---HHHHHhcchhhhcc-ccccCchHHHHHHHHHHHHh
Confidence 3444455566666788889999877764 6665544444443 44566666654422 2222221 11111111111
Q ss_pred hhc-----CchHH-HHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHH
Q 004081 507 LSV-----SKSRI-LLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAA 579 (775)
Q Consensus 507 ~~~-----~~~~~-~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~ 579 (775)
... ...+- .+. ... ...++.+.-+.+++++.++-. .-|.-.+.++...+...... .+..|.+
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~---lL~l~tnk~~q~r~~~a~lp~-------~~p~~~~~~ll~~~t~~~~~-~~~ka~e 362 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNA---LLALFTNKMDQVRELSASLPG-------MSPESLFPILLQEATKVREK-KHKKAIE 362 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHhCCc-------cCchHHHHHHHHHHHHHHHH-HHhhhHH
Confidence 110 11110 111 111 256677777777766665533 23444555555555444444 6777888
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHcCCChHH
Q 004081 580 VAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKASATLTLAELWLSFGPNHAK 657 (775)
Q Consensus 580 ~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A~al~~La~l~l~lG~~~f~ 657 (775)
++..... +.+.....+++.+++++...|+++.|+..+.-.+ .++.+ ..-.....+...+-.++...+.. .
T Consensus 363 ~L~~~~~-----~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~-~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~--~ 434 (652)
T KOG2376|consen 363 LLLQFAD-----GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL-ESWKSSILEAKHLPGTVGAIVALYYKIKDN--D 434 (652)
T ss_pred HHHHHhc-----cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhhhhhhhhccChhHHHHHHHHHHhccCC--c
Confidence 8776655 6777789999999999999999999998887433 22211 11111112233345566778887 7
Q ss_pred HHHHHHHHHHhHHHhcCCHH-HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 004081 658 MASNLIQQALPLILGHGGLE-LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVF 736 (775)
Q Consensus 658 ~Al~lLe~aLp~il~~G~~~-l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~ 736 (775)
-|-+++.+++-..+..-... ..-..+..+|...+. .|.-.+|...|++-...+ ..-.+++..+-.+|
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr------~G~~~ea~s~leel~k~n------~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR------HGNEEEASSLLEELVKFN------PNDTDLLVQLVTAY 502 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh------cCchHHHHHHHHHHHHhC------CchHHHHHHHHHHH
Confidence 89999999998887664332 112233344444555 688888888888776644 24455666666666
Q ss_pred HhcCCHHHHHH
Q 004081 737 DKLGRLAEREE 747 (775)
Q Consensus 737 ~~lGd~~~A~~ 747 (775)
..+ |++.|..
T Consensus 503 ~~~-d~eka~~ 512 (652)
T KOG2376|consen 503 ARL-DPEKAES 512 (652)
T ss_pred Hhc-CHHHHHH
Confidence 554 4555443
No 269
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.22 E-value=1.7 Score=29.81 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 508 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~ 508 (775)
++.++|..+...|++++|...+++..+.||.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5778999999999999999999999998885
No 270
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.95 E-value=11 Score=39.68 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
-.+++.+.+++..|+|-++++...+.|. ...++..++..+|..|...-++.+|...+..+|++-
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILR------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3466777888888888888888888775 345567788888888888888888888887777653
No 271
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.81 E-value=1.5 Score=30.12 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.4
Q ss_pred hHHhhHHHHHHhhCChHHHHHHHHHHHHH
Q 004081 223 IALLCLGMMHFHFGHPKQALDVLTEAVCL 251 (775)
Q Consensus 223 yAlLnlA~lh~~FG~~~~A~~al~EAi~~ 251 (775)
+|++++|.++...|.+++|+..+++.|..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 48999999999999999999999998763
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.50 E-value=7 Score=38.08 Aligned_cols=77 Identities=23% Similarity=0.216 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..++.++++.++..+..+.+.. .+....-+.+++.+|++.+|+..+++... +......+.-+
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~--------~e~d~~dg~l~i~rg~w~eA~rvlr~l~~------~~~~~p~~kAL 83 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNL--------KELDMFDGWLLIARGNYDEAARILRELLS------SAGAPPYGKAL 83 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCc--------cccchhHHHHHHHcCCHHHHHHHHHhhhc------cCCCchHHHHH
Confidence 46788999999999999999886643 35667779999999999999999988764 22222333344
Q ss_pred HHHHHHhcCCh
Q 004081 604 LAEIHKKSGNA 614 (775)
Q Consensus 604 lA~i~~~~G~~ 614 (775)
++.+....|++
T Consensus 84 ~A~CL~al~Dp 94 (153)
T TIGR02561 84 LALCLNAKGDA 94 (153)
T ss_pred HHHHHHhcCCh
Confidence 55556666665
No 273
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.09 E-value=41 Score=36.02 Aligned_cols=208 Identities=11% Similarity=0.025 Sum_probs=121.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHH-H
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLL-L 603 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl-~ 603 (775)
..+...+..+|..-+...+.+-.+ ..+.-+.++-..+.+..++|+|.+-++.+.+++...+....+...-.... .
T Consensus 36 K~l~e~~p~~Al~sF~kVlelEgE----KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~I 111 (440)
T KOG1464|consen 36 KGLKEDEPKEALSSFQKVLELEGE----KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSI 111 (440)
T ss_pred ccccccCHHHHHHHHHHHHhcccc----cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 556777889999989888887332 34456788889999999999999999999999987765433222111111 1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc-CCHHH-HHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GGLEL-RAR 681 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~-G~~~l-~A~ 681 (775)
+-.|- .+.+..--...+..-|..-+...+..+--..-..||.+|..+|.. .+-..++.+.-..+..- |.-.. ++.
T Consensus 112 lDyiS-tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~--~kl~KIlkqLh~SCq~edGedD~kKGt 188 (440)
T KOG1464|consen 112 LDYIS-TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEY--TKLQKILKQLHQSCQTEDGEDDQKKGT 188 (440)
T ss_pred HHHHh-hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHH--HHHHHHHHHHHHHhccccCchhhhccc
Confidence 11111 222222222233333333334444555555667799999887765 77666666654443221 11111 111
Q ss_pred -HHHHHH---HhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHH
Q 004081 682 -AFIAEA---KCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 682 -a~~~LA---r~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A 745 (775)
.+-..| .+|-. ..+--+-...+++|+.+=..+..|.-..-+.--=|..|...|..+.|
T Consensus 189 QLLEiYAlEIQmYT~------qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~A 250 (440)
T KOG1464|consen 189 QLLEIYALEIQMYTE------QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKA 250 (440)
T ss_pred hhhhhHhhHhhhhhh------hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHH
Confidence 111122 33433 23333444567899998889988887665555555556666666655
No 274
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.73 E-value=52 Score=36.18 Aligned_cols=159 Identities=14% Similarity=0.042 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 004081 578 AAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 657 (775)
Q Consensus 578 l~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~ 657 (775)
++-+++.++.+.+.--......+++.+|+-|.+.|+-+.|+..+.+..+-.-..|...-..-...+||-.+ ++. .
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy---~D~--~ 158 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY---LDH--D 158 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh---ccH--H
Confidence 34444444444433223344678999999999999999999999988888888887776666677777665 333 4
Q ss_pred HHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 004081 658 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 737 (775)
Q Consensus 658 ~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~ 737 (775)
---+.++.+=+++.+.||-..+-|.-.--|--.++ ..+..+|...+-.++..|...+-..-..-+.|..-.-.-
T Consensus 159 lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms------vR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i 232 (393)
T KOG0687|consen 159 LVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS------VRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLI 232 (393)
T ss_pred HHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH------HHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhh
Confidence 55666777888888888877766654444433333 455667888888888888877776666666666665556
Q ss_pred hcCCHHHHHH
Q 004081 738 KLGRLAEREE 747 (775)
Q Consensus 738 ~lGd~~~A~~ 747 (775)
.+.+++.+.+
T Consensus 233 ~leR~dlktK 242 (393)
T KOG0687|consen 233 ALERVDLKTK 242 (393)
T ss_pred eeccchHHhh
Confidence 6666555533
No 275
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.66 E-value=68 Score=33.78 Aligned_cols=89 Identities=11% Similarity=-0.065 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC
Q 004081 573 QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG 652 (775)
Q Consensus 573 d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG 652 (775)
.-...+++++.+...+...+..+....+...+|.-|...|+++.|+.++..+....++-|=..+...++..|.++...+|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 44567899999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHH
Q 004081 653 PNHAKMASNLI 663 (775)
Q Consensus 653 ~~~f~~Al~lL 663 (775)
+. +..+...
T Consensus 233 ~~--~~~l~~~ 241 (247)
T PF11817_consen 233 DV--EDYLTTS 241 (247)
T ss_pred CH--HHHHHHH
Confidence 97 6555543
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.34 E-value=5.9 Score=43.36 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=72.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++.+|.|++|..+|.+..++. |.. .....+++..|++...|..|..-.+.++.+-+. -..++-.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-------P~N-pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYSR 170 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-------PHN-PVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYSR 170 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-------CCC-ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHHH
Confidence 47899999999999999988863 221 234667788888888888888888877764333 3677888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
++.....+|...+|-..+..+|++--
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 88889999999999999999888864
No 277
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.05 E-value=38 Score=39.06 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=49.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---Hhhccc------
Q 004081 523 HERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM---CYKFNL------ 593 (775)
Q Consensus 523 ~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~---~~~~gd------ 593 (775)
|..++.+|+++++.+....- .+.+.+ ...-....+..+..+|-++.|+...+.--.. +-+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i-------~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNI-------PKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccC-------ChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHH
Confidence 46899999999987776522 121222 2334677888889999999988876443211 111111
Q ss_pred ---chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 594 ---QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 594 ---~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
.......+..+|.+.+..|+.+-|...+.++-+..
T Consensus 340 ~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~ 377 (443)
T PF04053_consen 340 IAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS 377 (443)
T ss_dssp HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH
T ss_pred HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc
Confidence 11122346666666666666666665555544443
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.77 E-value=1.4e+02 Score=36.09 Aligned_cols=238 Identities=17% Similarity=0.076 Sum_probs=121.4
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHH
Q 004081 487 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 566 (775)
Q Consensus 487 a~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ 566 (775)
+.-|+|+||..+.-.+..+- +++ +.....|||-...++++.- -++.|.++.-.+....+.
T Consensus 745 ~~~g~feeaek~yld~drrD------------LAi--elr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~ 804 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRD------------LAI--ELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGE 804 (1189)
T ss_pred hhhcchhHhhhhhhccchhh------------hhH--HHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHH
Confidence 45688888877765444221 222 3456678887777655542 234455666677788888
Q ss_pred HHHHcCChHHHHHHHHHHHH-----HHhhcccchhH-----------HHHHHHHH-------------HHHHhcCChhhH
Q 004081 567 TLLAANQFSEAAAVAHSLFC-----MCYKFNLQVEN-----------ASVLLLLA-------------EIHKKSGNAVLG 617 (775)
Q Consensus 567 ll~~~Gd~~eAl~~l~~aL~-----~~~~~gd~~~~-----------a~aLl~lA-------------~i~~~~G~~~~A 617 (775)
....+..+.+|.+.+...-. .|--.+...+. ...+-.+| +.|++.+.+..|
T Consensus 805 ~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaA 884 (1189)
T KOG2041|consen 805 TFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAA 884 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHH
Confidence 88888888888777643210 01000000000 11122333 345566666665
Q ss_pred HHHH------HHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC------------hHHHHHHHHHHHHhHHHhcCCHHHH
Q 004081 618 IPYA------LASLSFCQLLNLDLLKASATLTLAELWLSFGPN------------HAKMASNLIQQALPLILGHGGLELR 679 (775)
Q Consensus 618 l~~l------~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~------------~f~~Al~lLe~aLp~il~~G~~~l~ 679 (775)
.... -+|.++++.+.++-.....-..-+.+ ++-|.. +|+.| +++-+..+.-.+-+.++++
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaql-l~~~~~~eaIe~~Rka~~~~daa-rll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQL-LADANHMEAIEKDRKAGRHLDAA-RLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-HhhcchHHHHHHhhhcccchhHH-HHHHHHhHHHhhccCCHHH
Confidence 4322 26888888887776655544433333 233332 22322 2333333444456777777
Q ss_pred HHHHHHHHHhhhcCC--------CCCCCCChHHHHHHHHH-HHHHHHhccC-HHHHHHH--HHHHHHHHHhcCCHHHHH
Q 004081 680 ARAFIAEAKCLLSDP--------SFSVSQNPEAVLDPLRQ-ASEELQVLED-HELAAEA--FYLIAIVFDKLGRLAERE 746 (775)
Q Consensus 680 A~a~~~LAr~~lA~~--------~~~~~g~~~~Al~~L~~-Al~~f~~l~~-~~~~~ev--l~~LA~l~~~lGd~~~A~ 746 (775)
-.-++.||-.+.... .....|..+.|.+.++. +++.-.++.. ...-+++ +..||.-+.-.|....|-
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al 1041 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDAL 1041 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHH
Confidence 777777765443310 01124666677765542 2222222222 2233333 345555555566555543
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.53 E-value=91 Score=33.82 Aligned_cols=138 Identities=22% Similarity=0.173 Sum_probs=93.9
Q ss_pred chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh-HHH-
Q 004081 594 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP-LIL- 671 (775)
Q Consensus 594 ~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp-~il- 671 (775)
....+..++..+.+..+.|+++.|...+.++...-...+.. ...+.+.-+.++...|+. .+|+..+++.+. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~--~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQ--EEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhhh
Confidence 55667889999999999999999998887766643221111 345556678888899998 999999998887 222
Q ss_pred --------------------------hcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHH
Q 004081 672 --------------------------GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA 725 (775)
Q Consensus 672 --------------------------~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~ 725 (775)
........|+++..+|+-..........+....++..+.+|...... ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~ 292 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-----WE 292 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-----HH
Confidence 23346788888888886555520001147778899999998765432 22
Q ss_pred HHHHHHHHHHHHhcCC
Q 004081 726 AEAFYLIAIVFDKLGR 741 (775)
Q Consensus 726 ~evl~~LA~l~~~lGd 741 (775)
.+++..|..+..+-+
T Consensus 293 -k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 293 -KAWHSWALFNDKLLE 307 (352)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 266666666665543
No 280
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=80.22 E-value=51 Score=35.43 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHh-cCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH-RGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~-~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
+++.+....-+.++.+.|..++.+|+. .... ...++... +. ...+ .++...|..+++..+..++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~-~~~~-~~~vy~~~-A~---~E~~~~~d~~~A~~Ife~glk~f~~-------- 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK-DKRC-TYHVYVAY-AL---MEYYCNKDPKRARKIFERGLKKFPS-------- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCS--THHHHHH-HH---HHHHTCS-HHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc-CCCC-CHHHHHHH-HH---HHHHhCCCHHHHHHHHHHHHHHCCC--------
Confidence 455566666677789999999998872 2211 12233322 21 3334 57777799999999997663
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
....++.-+..++..||.+.|..++++++.. .......-.++......-.+.|+.+.......++.++.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2345666678889999999999999988752 11111123345555555567777777776666666654
No 281
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.13 E-value=48 Score=37.41 Aligned_cols=141 Identities=14% Similarity=-0.040 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc-hHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~-~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
.+.-..+.+..++.+++|..|..+++....+.+.... .....++.+ ..++.+.++.+|.+.++.+......
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~---y~~WD~fd~~~A~~~l~~~~~~~~~----- 201 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEG---YDAWDRFDHKEALEYLEKLLKRDKA----- 201 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHH---HHHHHccCHHHHHHHHHHHHHHhhh-----
Confidence 3345566777788899999999999998876322111 112233333 3788899999999999987763110
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc-c-chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-L-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g-d-~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
-......+..+..+. +++..+........... + ...-..-++.-|.=....|+|+.|...+=|++++.-+
T Consensus 202 l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 202 LNQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred hHhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 000112222222222 22222222222211111 1 2333445677777778899999999999999999864
No 282
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.00 E-value=88 Score=33.34 Aligned_cols=158 Identities=18% Similarity=0.064 Sum_probs=78.8
Q ss_pred HcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 004081 570 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 649 (775)
Q Consensus 570 ~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l 649 (775)
++++|++|++++.+.....- +.|+...|-.+..--++...+.+.+.-.... -+|.++..
T Consensus 2 ~~kky~eAidLL~~Ga~~ll--------------------~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~-~rl~~l~~ 60 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILL--------------------KHGQYGSGADLALLLIEVYEKSEDPVDEESI-ARLIELIS 60 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHH--------------------HTT-HHHHHHHHHHHHHHHHHTT---SHHHH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH--------------------HCCCcchHHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Confidence 46677777777765544333 3333433333333333333333333333322 33666666
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH-----------HHHHHHh
Q 004081 650 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ-----------ASEELQV 718 (775)
Q Consensus 650 ~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~-----------Al~~f~~ 718 (775)
.++..+ .+=.+.++.++-+....+...+-...+..+|+.+.. .+++..|..++-. .+..+..
T Consensus 61 ~~~~~~-p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~------e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~ 133 (260)
T PF04190_consen 61 LFPPEE-PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWK------EGNYYEAERHFLLGTDPSAFAYVMLLEEWST 133 (260)
T ss_dssp HS-TT--TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHH------TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred hCCCCc-chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHh------hccHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 665431 134566666666664444455555667777777777 6666666665531 1122233
Q ss_pred ccCHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHH
Q 004081 719 LEDHELAAEAFYLIA-IVFDKLGRLAEREEAAALFKEYV 756 (775)
Q Consensus 719 l~~~~~~~evl~~LA-~l~~~lGd~~~A~~aAa~f~ql~ 756 (775)
-+.+... +.+...| .-|..+|+...|+.....|.+..
T Consensus 134 ~~~~~e~-dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~ 171 (260)
T PF04190_consen 134 KGYPSEA-DLFIARAVLQYLCLGNLRDANELFDTFTSKL 171 (260)
T ss_dssp HTSS--H-HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred hcCCcch-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3444433 4444444 44677899999999777777663
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.68 E-value=6.8 Score=42.90 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 641 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 641 (775)
--.|.-+..+|.|++|++++...+. ....+.....++|..|.+..++..|...+..|+.+-+. +..|..+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~----Y~KAYSR 170 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL----YVKAYSR 170 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH----HHHHHHH
Confidence 3457788999999999999999885 22334556788899999999999999999988888763 3444444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 642 LTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 642 ~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+ +.....+|.. .+|.+-++.+|.+-
T Consensus 171 R--~~AR~~Lg~~--~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 171 R--MQARESLGNN--MEAKKDCETVLALE 195 (536)
T ss_pred H--HHHHHHHhhH--HHHHHhHHHHHhhC
Confidence 4 4555667877 78888888776653
No 284
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=78.67 E-value=66 Score=34.26 Aligned_cols=174 Identities=17% Similarity=0.077 Sum_probs=106.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHHhhcccchhHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL----AANQFSEAAAVAHSLFCMCYKFNLQVENASV 600 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~----~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~a 600 (775)
.....+++..|...+..+... + |+ .+...++.++. ...+..+|+++++.+.. .+...+
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~----~--~~----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a 111 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL----G--DA----AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEA 111 (292)
T ss_pred cccccccHHHHHHHHHHhhhc----C--Ch----HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHH
Confidence 344666777777777666542 2 32 33444444442 33457788888874443 344556
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCC-hHHHHHHHHHHHHhHHH
Q 004081 601 LLLLAEIHKK----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPN-HAKMASNLIQQALPLIL 671 (775)
Q Consensus 601 Ll~lA~i~~~----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~----lG~~-~f~~Al~lLe~aLp~il 671 (775)
...+|.++.. ..++.+|..++.+|...- +... +.+...|+..+.. .|.. ...+|+..+..+....
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 6668888765 336778888877665543 2222 4446667877764 2232 1236888887776664
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcC
Q 004081 672 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 740 (775)
Q Consensus 672 ~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lG 740 (775)
-..+.+.||.++..+ .+...++.+|..++.+|.+ .++ ....+.++ ++...|
T Consensus 186 -------~~~a~~~lg~~y~~G--~Gv~~d~~~A~~wy~~Aa~----~g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 -------NPDAQLLLGRMYEKG--LGVPRDLKKAFRWYKKAAE----QGD----GAACYNLG-LMYLNG 236 (292)
T ss_pred -------CHHHHHHHHHHHHcC--CCCCcCHHHHHHHHHHHHH----CCC----HHHHHHHH-HHHhcC
Confidence 456778888888774 4446678899999999864 344 55666666 444444
No 285
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.22 E-value=1.3e+02 Score=34.19 Aligned_cols=174 Identities=17% Similarity=0.046 Sum_probs=110.9
Q ss_pred HHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHhhhcCchH-HHHHH---HhhHHHHHHhcCCHHHHHHHHHHHhhhhhc
Q 004081 475 AALAHVKLIQH--LAVFKGYKEAFSALKIAEEKFLSVSKSR-ILLLK---LQLLHERSLHRGHLKLAQKVCDELGVMASS 548 (775)
Q Consensus 475 ~a~al~~LA~~--la~~G~y~eAl~~L~~a~~~f~~~~~~~-~~~l~---l~l~~~~al~~G~~~~A~~~l~~ll~L~~~ 548 (775)
+..+++.|-.+ ++.+.+|.+|...-+....... ....+ +-.+. .-.+...+-..|+...-...+..++..+.-
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 44555555433 3456889998887776555432 12222 22221 111113455677777777666666654332
Q ss_pred CCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 549 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 549 ~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
..|.++++...+.+-+.++.-+-|+.|-.++....- . +.......+|-+.-+|.|..-.++|..|..++.+|+..+
T Consensus 202 --rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~-p-e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 202 --RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY-P-EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred --cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC-c-cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 237888999999999999999999999998876541 1 111223668999999999999999999999999999998
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCC
Q 004081 629 QLLNLDLLKASATLTLAELWLSFGP 653 (775)
Q Consensus 629 ~~~g~~~~~A~al~~La~l~l~lG~ 653 (775)
-++.--..+-.+...+.-+.+-+|.
T Consensus 278 pq~~alGf~q~v~k~~ivv~ll~ge 302 (493)
T KOG2581|consen 278 PQHAALGFRQQVNKLMIVVELLLGE 302 (493)
T ss_pred cchhhhhHHHHHHHHHHHHHHHcCC
Confidence 6433322233333334444445666
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.77 E-value=66 Score=36.10 Aligned_cols=146 Identities=14% Similarity=0.018 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhc--------------Cc---------hHHHHHHHhhHHHHHHhcCCH
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV--------------SK---------SRILLLKLQLLHERSLHRGHL 532 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~--------------~~---------~~~~~l~l~l~~~~al~~G~~ 532 (775)
..++..++.+...+|++..|.+++++|+=.|... +. ++.-.+++.-......++|-|
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 5678889999999999999999999987554311 11 111112221112467889999
Q ss_pred HHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHhc
Q 004081 533 KLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-NLQVENASVLLLLAEIHKKS 611 (775)
Q Consensus 533 ~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~-gd~~~~a~aLl~lA~i~~~~ 611 (775)
..|.+++.-++++-+ ..||.+ +++.+-.+.++.++|+-=+++.+.....+.+. -... -..-..+|..+...
T Consensus 120 rTAlE~~KlLlsLdp---~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l--Pn~a~S~aLA~~~l 191 (360)
T PF04910_consen 120 RTALEWCKLLLSLDP---DEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL--PNFAFSIALAYFRL 191 (360)
T ss_pred HHHHHHHHHHHhcCC---CCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC--ccHHHHHHHHHHHh
Confidence 999999999999832 116444 66666666688889988888877665431111 0000 01233444445555
Q ss_pred CCh---------------hhHHHHHHHHHHHHH
Q 004081 612 GNA---------------VLGIPYALASLSFCQ 629 (775)
Q Consensus 612 G~~---------------~~Al~~l~~AL~la~ 629 (775)
++. +.|...+.+|+...-
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 555 677777777777664
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=77.67 E-value=3.9 Score=30.76 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=28.2
Q ss_pred HHhhHHHHHHhhCChHHHHHHHHHHHHHHHHc
Q 004081 224 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQQH 255 (775)
Q Consensus 224 AlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe~ 255 (775)
+.+.||..+...|++++|+..++.+|+..-.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 56889999999999999999999999875433
No 288
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.80 E-value=5.1 Score=30.74 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.+.++..|+..||++.|.+.+++.+. .|+...+..+.-++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA~~LL 41 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE----EGDEAQRQEARALL 41 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 46789999999999999999999885 35555555444433
No 289
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.54 E-value=3.5 Score=27.53 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALK 500 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~ 500 (775)
.+...||..+..+|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999988875
No 290
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=76.49 E-value=21 Score=33.67 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 601 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD---------LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 601 Ll~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~---------~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+.++|....+.+++-+++-++++|+.++.+.... ......-.+||..|..+|++ +=.+++|+-+-+.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~--~yELkYLqlASE~V 80 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDS--DYELKYLQLASEKV 80 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCCh--HHHHHHHHHHHHHH
Confidence 5678888889999999999999999998776311 11222334699999999999 66777776654443
No 291
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.50 E-value=1.1e+02 Score=37.18 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=51.4
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH------HHHHHHHhccCHH
Q 004081 650 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR------QASEELQVLEDHE 723 (775)
Q Consensus 650 ~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~------~Al~~f~~l~~~~ 723 (775)
++|..+..+|+.+++.+-.+-...|...+.|.-|...+.-.++..-+...+....|++++. .|.....++--|.
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e 821 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPE 821 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCch
Confidence 3444444556665555544444444444444444444332222111111344445555543 4555555555666
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 724 LAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 724 ~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
..-..+..+|.=+...|.+.+|++
T Consensus 822 ~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhh
Confidence 666666677777788888887765
No 292
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.30 E-value=20 Score=37.81 Aligned_cols=105 Identities=12% Similarity=-0.009 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh------cccchhH------HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK------FNLQVEN------ASVLLLLAEIHKKSGNAVLGIPYALAS 624 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~------~gd~~~~------a~aLl~lA~i~~~~G~~~~Al~~l~~A 624 (775)
...++...+.-+...|+|.+|...+.+++...+. .|++.|. .-.+++.+++++..|++-+++++...-
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999865553 3344332 335899999999999999999998777
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 625 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 625 L~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
|..-. ....|+..-|..+.+.=.. ++|.+=|..+|.+
T Consensus 257 L~~~~------~nvKA~frRakAhaa~Wn~--~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 257 LRHHP------GNVKAYFRRAKAHAAVWNE--AEAKADLQKVLEL 293 (329)
T ss_pred HhcCC------chHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhc
Confidence 66543 2235566666666555455 7777766666543
No 293
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.26 E-value=18 Score=31.42 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=54.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccc
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 594 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~ 594 (775)
+..+..+..+|......++.-.+ ++...+.++-.++.++...|.|.+.++..-+-+.++++..++
T Consensus 15 kLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 15 KLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 44577888888888888887433 677799999999999999999999999999888888877654
No 294
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.06 E-value=11 Score=43.27 Aligned_cols=119 Identities=12% Similarity=0.071 Sum_probs=81.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH-HHHHHHHHHHHHcCChHHHHHHHHHHHH-HHhhc--ccc------
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT-EASLRHARTLLAANQFSEAAAVAHSLFC-MCYKF--NLQ------ 594 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~-~a~~~~a~ll~~~Gd~~eAl~~l~~aL~-~~~~~--gd~------ 594 (775)
....+|+|..|.+++...--.-..-+-+.|.... ...++++-++.+.|.|..+..++..+++ .|... |..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4567799999988777653321111111222222 3447899999999999999999999995 45432 211
Q ss_pred ---hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 004081 595 ---VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 649 (775)
Q Consensus 595 ---~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l 649 (775)
.....++.+.|..++..|+|-.|+..+.+|....+..- +..++||+..+
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP------rlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP------RLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc------HHHHHHHHHHH
Confidence 12355799999999999999999999999999886432 34445555543
No 295
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=74.16 E-value=5.7 Score=29.49 Aligned_cols=33 Identities=27% Similarity=0.160 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 599 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 599 ~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
.++..+|.|-...+++..|...+.+||.+-.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999999999999887643
No 296
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.51 E-value=18 Score=38.10 Aligned_cols=97 Identities=8% Similarity=-0.022 Sum_probs=78.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
..+.-.+|..|...|.+++.+-+ . .+....+.+..++.+.+++....-..++++ .....+..+..+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP-------~-~~~Y~tnralchlk~~~~~~v~~dcrralq------l~~N~vk~h~fl 84 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINP-------T-VASYYTNRALCHLKLKHWEPVEEDCRRALQ------LDPNLVKAHYFL 84 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCC-------C-cchhhhhHHHHHHHhhhhhhhhhhHHHHHh------cChHHHHHHHHH
Confidence 55566788999999999988633 2 334577889999999998888887777775 344558889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
|........+..|+..+.+|.++.+....+.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~ 115 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLLREQPFTF 115 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999998877653
No 297
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=73.37 E-value=55 Score=30.38 Aligned_cols=99 Identities=20% Similarity=0.168 Sum_probs=66.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH----HhcCChhhHHHHHHHHHHHH-HHhCCcHHHH
Q 004081 564 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH----KKSGNAVLGIPYALASLSFC-QLLNLDLLKA 638 (775)
Q Consensus 564 ~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~----~~~G~~~~Al~~l~~AL~la-~~~g~~~~~A 638 (775)
++.-+.++||+-.|++.++.++..-.+... ..-++..-|.|+ ....+++-=+.++.-+++-+ +...+....|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~---~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES---SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc---hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence 356678999999999999998764332221 123444555555 35567777788888888777 5566777778
Q ss_pred HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHh
Q 004081 639 SATLTLAELWLSFGPN-HAKMASNLIQQALP 668 (775)
Q Consensus 639 ~al~~La~l~l~lG~~-~f~~Al~lLe~aLp 668 (775)
..+..||.-+ |.. +++++..-.+++|-
T Consensus 79 ~~L~~la~~l---~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 79 HSLFELASQL---GSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHHHh---hhHHHHHHHHHHHHHHhc
Confidence 8888777543 332 45777776666653
No 298
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.01 E-value=75 Score=35.89 Aligned_cols=132 Identities=17% Similarity=0.078 Sum_probs=71.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
...+.+++|..|.+++..+.. + +++.. .......+..+-....+-+|.+|.+.++..+...... ......+..
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~--r-l~~~~-~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---~~~~~~l~~ 211 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLR--R-LPGRE-EYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---NQEREGLKE 211 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--h-CCchh-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---HhHHHHHHH
Confidence 467899999999999999887 2 33222 1223334445555577889999999999887632210 011111111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH--HHcCCChHHHHHHHHHHHHhHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW--LSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~--l~lG~~~f~~Al~lLe~aLp~il 671 (775)
+. ...+++..+............+.....+...+.... ...|++ +.|...+=++++++.
T Consensus 212 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gry--ddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 212 LV-------EVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRY--DDAVARLYRALELLA 272 (379)
T ss_pred HH-------HHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHH
Confidence 11 112333333333333332221212222222233333 346766 899988888888873
No 299
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.70 E-value=25 Score=38.68 Aligned_cols=93 Identities=13% Similarity=0.034 Sum_probs=69.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.++...+|..|...|..-+. ...+ |++..+..+.+++-+....|+|..|+.-...++. ...-...+.++-
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk--~kc~--D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~------~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLK--KKCA--DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK------LKPTHLKAYIRG 159 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHh--hcCC--CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh------cCcchhhhhhhh
Confidence 67778889999999988777 4445 7778888888999999999999999988888775 234456666777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~l 627 (775)
|.++..+.++..|.......+.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Confidence 77777776666666555544433
No 300
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=72.42 E-value=55 Score=35.19 Aligned_cols=135 Identities=11% Similarity=-0.006 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-SGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~-~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
+........+.+..++|...+.+++ ......-.++...|.+-.. .+++..|...+.+++...-. .. .
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~------~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~---~ 71 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRAR------KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DP---D 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----H---H
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHH------cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CH---H
Confidence 3344455556666777777776665 2334445677788888556 67777799999999977532 21 2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 718 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~ 718 (775)
......+.++.+|+. +.|+.++++++..+ +.....-..+....+--.. -|+.+.+....+++.+.|..
T Consensus 72 ~~~~Y~~~l~~~~d~--~~aR~lfer~i~~l---~~~~~~~~iw~~~i~fE~~------~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDI--NNARALFERAISSL---PKEKQSKKIWKKFIEFESK------YGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHHTT-H--HHHHHHHHHHCCTS---SCHHHCHHHHHHHHHHHHH------HS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCcH--HHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHhhh
Confidence 233344666778987 99999999998774 2322122233333332223 57777777777777776644
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=72.37 E-value=2.9e+02 Score=35.50 Aligned_cols=152 Identities=16% Similarity=0.039 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh---------HHHHHHHHHHHHHHcCChHHHHHHHHHHH-------
Q 004081 522 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL---------KTEASLRHARTLLAANQFSEAAAVAHSLF------- 585 (775)
Q Consensus 522 ~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~---------~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL------- 585 (775)
+|..++-.-|++.|....+.... ||.- ..+.++++=.+...+|+|+.|+..+.++=
T Consensus 843 lfn~ALgtYDl~Lal~VAq~Sqk--------DPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~ 914 (1265)
T KOG1920|consen 843 LFNSALGTYDLDLALLVAQKSQK--------DPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPEC 914 (1265)
T ss_pred HHHhhhcccchHHHHHHHHHhcc--------ChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHH
Confidence 34566666666666655444322 3211 12345556666677888888888775432
Q ss_pred -HHHhhcccch-----------hHHHH-------------HHHHHHHHHhcCChhhHHHHHH------HHHHHHHHhCCc
Q 004081 586 -CMCYKFNLQV-----------ENASV-------------LLLLAEIHKKSGNAVLGIPYAL------ASLSFCQLLNLD 634 (775)
Q Consensus 586 -~~~~~~gd~~-----------~~a~a-------------Ll~lA~i~~~~G~~~~Al~~l~------~AL~la~~~g~~ 634 (775)
...++.+.-. -+-.+ ...-|..|..+|..++|+..+. +|+.++.+....
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~ 994 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEG 994 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence 2222222110 01111 2234556778888888877664 577777644443
Q ss_pred HHH--HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHH
Q 004081 635 LLK--ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 684 (775)
Q Consensus 635 ~~~--A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~ 684 (775)
..+ ..+.- |+..+...|++ -+|-+++.+.+-...+.=..+.+|..|.
T Consensus 995 ~de~~~~a~~-L~s~L~e~~kh--~eAa~il~e~~sd~~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 995 KDELVILAEE-LVSRLVEQRKH--YEAAKILLEYLSDPEEAVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHHHH-HHHHHHHcccc--hhHHHHHHHHhcCHHHHHHHHhhHhHHH
Confidence 333 33344 67777778887 7777777766655544444444444433
No 302
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=71.84 E-value=67 Score=41.18 Aligned_cols=191 Identities=17% Similarity=0.031 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcC-chH-HHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-KSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~-~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
+.-...-+.....+|++.+|.+ +.++...+...- ..+ ...-++..+...+-..|++.+|......+..+..++.+.|
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 3334444555566888999988 777776664221 111 1111222222466788999999999998888877777888
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh--hcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY--KFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~--~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
.........+++.+....+....|+..+.+++..-. ...+.+.-+..-.++..+....++++.|+.++..|+.+....
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 888888899999999999999999999998876422 111344446666788888999999999999999999988654
Q ss_pred CC--cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 632 NL--DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 632 g~--~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
.- ...-+.....++++...+|+. ..|+.+......+
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~df--r~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDF--RNALEHEKVTYGI 1128 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHH--HHHHHHHhhHHHH
Confidence 43 233445555566666666654 6666655554433
No 303
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=71.21 E-value=56 Score=37.92 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHH
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDEL 542 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~l 542 (775)
...+-.+||...++.|+.+||.+.+++..+.+|.... . .+...+ .+..+..++|++++.++.+=
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-l--~IrenL-ie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-L--NIRENL-IEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-h--hHHHHH-HHHHHhcCCHHHHHHHHHHh
Confidence 3456678999999999999999999999988873222 1 122211 16889999999999888774
No 304
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=70.62 E-value=2.8e+02 Score=34.56 Aligned_cols=193 Identities=13% Similarity=-0.017 Sum_probs=106.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcC
Q 004081 470 SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSV 549 (775)
Q Consensus 470 a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~ 549 (775)
.|....++++- |..+.+.|++++|+..|+.....-+. + ...++++...+...|++++|..+++++..-++
T Consensus 39 ~Pn~~~a~vLk--aLsl~r~gk~~ea~~~Le~~~~~~~~--D----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P-- 108 (932)
T KOG2053|consen 39 HPNALYAKVLK--ALSLFRLGKGDEALKLLEALYGLKGT--D----DLTLQFLQNVYRDLGKLDEAVHLYERANQKYP-- 108 (932)
T ss_pred CCCcHHHHHHH--HHHHHHhcCchhHHHHHhhhccCCCC--c----hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC--
Confidence 34445555554 55678899999999777654433322 1 12233222478889999999999999987533
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHH-----HHHHH
Q 004081 550 TGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP-----YALAS 624 (775)
Q Consensus 550 ~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~-----~l~~A 624 (775)
. -+.++..=..+.+-++|.+-.... ++++...+... ...+.....+....-.++.++. +..+.
T Consensus 109 -----~--eell~~lFmayvR~~~yk~qQkaa---~~LyK~~pk~~--yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 109 -----S--EELLYHLFMAYVREKSYKKQQKAA---LQLYKNFPKRA--YYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred -----c--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCccc--chHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 2 234444444555666665443332 33333223222 2233333344444445555543 22221
Q ss_pred HHHH-HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHH
Q 004081 625 LSFC-QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA 687 (775)
Q Consensus 625 L~la-~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LA 687 (775)
...- .+-|--...+++.+ --.++..+|.. ++|++.+..-+.-.+..++..++-.-+-.+.
T Consensus 177 ~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k~--~eal~~l~~~la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIIL-YLLILELQGKY--QEALEFLAITLAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred HHHHhccCCccchHHHHHH-HHHHHHhcccH--HHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1111 12243334455555 44566667877 9999999877777777777777555444443
No 305
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.71 E-value=6.4 Score=25.26 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=25.9
Q ss_pred HHhhHHHHHHhhCChHHHHHHHHHHHHHH
Q 004081 224 ALLCLGMMHFHFGHPKQALDVLTEAVCLS 252 (775)
Q Consensus 224 AlLnlA~lh~~FG~~~~A~~al~EAi~~A 252 (775)
+..++|.++..-|++++|...++++|++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 45789999999999999999999999764
No 306
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=67.51 E-value=1.5e+02 Score=32.66 Aligned_cols=127 Identities=13% Similarity=0.021 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 004081 616 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 695 (775)
Q Consensus 616 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~ 695 (775)
.-+..+.+.++-+.++--.....++.+..|+-++++|+- +.|++.+...+.-....|...+.--....+|-.+
T Consensus 82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDk--ena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy----- 154 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDK--ENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY----- 154 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh-----
Confidence 345566677777776655667778899999999999999 9999999999999888888777655555554333
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004081 696 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 756 (775)
Q Consensus 696 ~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~ 756 (775)
++..-.-+.++.|..++++-||=.+..+--...|.-.....+..+|.+ .|.+..
T Consensus 155 ----~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~---Lfld~v 208 (393)
T KOG0687|consen 155 ----LDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAAD---LFLDSV 208 (393)
T ss_pred ----ccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHH---HHHHHc
Confidence 345567778899999999999877777777777776666666666543 555443
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=67.25 E-value=6.6 Score=26.16 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred hHHhhHHHHHHhhCChHHHHHHHHH
Q 004081 223 IALLCLGMMHFHFGHPKQALDVLTE 247 (775)
Q Consensus 223 yAlLnlA~lh~~FG~~~~A~~al~E 247 (775)
.+.++||..|..-|+.++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3789999999999999999988763
No 308
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.53 E-value=7.2 Score=45.44 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
+..++.-+.+|...|+...|..++..++-.. +.....-+.++|++.++.|-.-.|-..+.++|.+-. .+
T Consensus 607 w~~ln~aglywr~~gn~~~a~~cl~~a~~~~-----p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~------se 675 (886)
T KOG4507|consen 607 WLILNEAGLYWRAVGNSTFAIACLQRALNLA-----PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS------SE 675 (886)
T ss_pred EEEeecccceeeecCCcHHHHHHHHHHhccC-----hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc------cC
Confidence 3445566777899999999999999988522 233344588999999999988999999999998862 33
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
....+.+|.+++.+..- +.|+++++++|..-
T Consensus 676 pl~~~~~g~~~l~l~~i--~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNI--SGALEAFRQALKLT 706 (886)
T ss_pred chHHHhcchhHHHHhhh--HHHHHHHHHHHhcC
Confidence 45567799999999998 99999999998654
No 309
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.91 E-value=6.6 Score=45.72 Aligned_cols=99 Identities=23% Similarity=0.315 Sum_probs=78.2
Q ss_pred HHHHHHHHHHH-HhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH
Q 004081 598 ASVLLLLAEIH-KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 676 (775)
Q Consensus 598 a~aLl~lA~i~-~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~ 676 (775)
+.+-+++|.+| ...|++..|...+++|+.++-.-.+ -.++.||.+++.-|.. -.|-.++.++|.+. ..
T Consensus 606 ~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~--~da~~~l~q~l~~~-~s--- 674 (886)
T KOG4507|consen 606 IWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLH--LDATKLLLQALAIN-SS--- 674 (886)
T ss_pred eEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhh--ccHHHHHHHHHhhc-cc---
Confidence 33445556666 4679999999999999988754332 4567899999999977 88999999999886 22
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 677 ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 677 ~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
+-..++.+|+++++ ..+...|++.+++|++.
T Consensus 675 --epl~~~~~g~~~l~------l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 675 --EPLTFLSLGNAYLA------LKNISGALEAFRQALKL 705 (886)
T ss_pred --CchHHHhcchhHHH------HhhhHHHHHHHHHHHhc
Confidence 33578889999999 88999999999999874
No 310
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.73 E-value=1.4e+02 Score=32.42 Aligned_cols=96 Identities=18% Similarity=0.078 Sum_probs=69.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 642 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 642 (775)
.-+..+..+|++.+.+-.+-+.- . .....-.+++-+--.+|.+.|+|...++....=|.--...+.+...+.+.+
T Consensus 88 vGIQALAEmnrWreVLsWvlqyY---q--~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaEL 162 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYY---Q--VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAEL 162 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHh---c--CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHH
Confidence 34667788999999888775443 2 222334666666667799999998887776544443345556778888889
Q ss_pred HHHHHHHHcCCChHHHHHHHHHH
Q 004081 643 TLAELWLSFGPNHAKMASNLIQQ 665 (775)
Q Consensus 643 ~La~l~l~lG~~~f~~Al~lLe~ 665 (775)
.|-.|++=+|.. ++|++++..
T Consensus 163 yLl~VLlPLG~~--~eAeelv~g 183 (309)
T PF07163_consen 163 YLLHVLLPLGHF--SEAEELVVG 183 (309)
T ss_pred HHHHHHhccccH--HHHHHHHhc
Confidence 999999989987 999999843
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.23 E-value=13 Score=23.67 Aligned_cols=31 Identities=23% Similarity=0.030 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 507 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~ 507 (775)
.++.++|..+...|++++|...++++.+..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567888888889999999998888776554
No 312
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.03 E-value=34 Score=37.64 Aligned_cols=107 Identities=16% Similarity=0.053 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
+|+-.++-.--.|.-++...+|..|.+.+.+.|. .+.+|+...+..+.++|-++...|++..|+..+.+|+.+-
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---- 149 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---- 149 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 4555666666778889999999999999999886 4458899999999999999999999999999998877653
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
-.+. .+..+=|.+++++.. |..|...+++.+.+
T Consensus 150 P~h~--Ka~~R~Akc~~eLe~--~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 150 PTHL--KAYIRGAKCLLELER--FAEAVNWCEEGLQI 182 (390)
T ss_pred cchh--hhhhhhhHHHHHHHH--HHHHHHHHhhhhhh
Confidence 2333 344444555555654 37777777776443
No 313
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.21 E-value=2.9e+02 Score=31.01 Aligned_cols=154 Identities=14% Similarity=0.016 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-----c-----ccchh-------------HHHHHHHHHHHHHhcCC
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-----F-----NLQVE-------------NASVLLLLAEIHKKSGN 613 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-----~-----gd~~~-------------~a~aLl~lA~i~~~~G~ 613 (775)
...+++.++.++..+||++.|.++++++|-.+++ . ....+ -..++........+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 4568999999999999999999999999866552 1 11111 13357777788889999
Q ss_pred hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH----hc--CCHHHHHHHHHHHH
Q 004081 614 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL----GH--GGLELRARAFIAEA 687 (775)
Q Consensus 614 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il----~~--G~~~l~A~a~~~LA 687 (775)
+..|++.+.--+.+-- .+|+++.-..+-.+| +.-++. +-=+++.++...... .. |-.+-.|-|++.++
T Consensus 119 ~rTAlE~~KlLlsLdp-~~DP~g~ll~ID~~A---Lrs~~y--~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDP-DEDPLGVLLFIDYYA---LRSRQY--QWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHHHHHHHHHHHhcCC-CCCcchhHHHHHHHH---HhcCCH--HHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 9999998877666642 346655444333333 444544 555666665444211 11 44455555655554
Q ss_pred Hhhh--cCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 688 KCLL--SDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 688 r~~l--A~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
+... ...+....+..++|...|.+|+..|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHh
Confidence 3300 0011122455688999999998877
No 314
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=60.05 E-value=3.7e+02 Score=32.46 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=76.5
Q ss_pred HHHHHHHhcCHHHHHHHHHH------HHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 482 LIQHLAVFKGYKEAFSALKI------AEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 482 LA~~la~~G~y~eAl~~L~~------a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
+|..++.+|.|.||..++.+ |++.|.. ..+.-+. ...+-.|.-.+-..+.+.-.+-++.+. .|.
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD-----lRMFD~a---QE~~~~g~~~eKKmL~RKRA~WAr~~k--ePk 707 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTD-----LRMFDYA---QEFLGSGDPKEKKMLIRKRADWARNIK--EPK 707 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH-----HHHHHHH---HHHhhcCChHHHHHHHHHHHHHhhhcC--CcH
Confidence 44557778999888777653 2222210 1111111 245566666666666666555555333 333
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHH------HHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAH------SLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~------~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
. -+++++..|+.+.|++.+. -++++.++. ...+...+..++.-+.+...+.-|-+.+.
T Consensus 708 a-------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl--d~~ere~l~~~a~ylk~l~~~gLAaeIF~------- 771 (1081)
T KOG1538|consen 708 A-------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL--DKAEREPLLLCATYLKKLDSPGLAAEIFL------- 771 (1081)
T ss_pred H-------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc--chhhhhHHHHHHHHHhhccccchHHHHHH-------
Confidence 3 2567788899888887653 223333322 12223334444444444444444433332
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 630 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 630 ~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
+.|+. -.+-.++...|+. .+|..+-++.
T Consensus 772 k~gD~-------ksiVqlHve~~~W--~eAFalAe~h 799 (1081)
T KOG1538|consen 772 KMGDL-------KSLVQLHVETQRW--DEAFALAEKH 799 (1081)
T ss_pred HhccH-------HHHhhheeecccc--hHhHhhhhhC
Confidence 22221 1234555566666 7777776654
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=59.40 E-value=2.6e+02 Score=30.22 Aligned_cols=97 Identities=29% Similarity=0.314 Sum_probs=68.1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
.+...+...+.++.+....|.. +.|...+..+.......+.. ...+.+..|+...+ .|+..+|+..|+..
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~--~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~------~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNF--QLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWA------QGEQEEAIQKLREL 210 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCc--HHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHH------cCCHHHHHHHHHHH
Confidence 3556667778888888889988 88999888876644222221 44566677788888 89999999999888
Q ss_pred HH-HHHhc---------------------------cCHHHHHHHHHHHHHHHHhc
Q 004081 713 SE-ELQVL---------------------------EDHELAAEAFYLIAIVFDKL 739 (775)
Q Consensus 713 l~-~f~~l---------------------------~~~~~~~evl~~LA~l~~~l 739 (775)
+. .+... ......++++..+|......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 87 33322 23455667777777777766
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=55.96 E-value=89 Score=33.81 Aligned_cols=87 Identities=17% Similarity=0.031 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
+....++-.++-.+...|+++.+...+++..+.-|-. ...|..-+ +.+...|+...|...|.++..+..+--+.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~~lm----~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYD--EPAYLRLM----EAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHHHHH----HHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 3557888999999999999999999999877665422 22333223 46889999999999999999965554456
Q ss_pred ChhhHHHHHHHHH
Q 004081 553 DMDLKTEASLRHA 565 (775)
Q Consensus 553 D~~~~~~a~~~~a 565 (775)
+|..+...++..+
T Consensus 224 ~P~~~~~~~y~~~ 236 (280)
T COG3629 224 DPAPELRALYEEI 236 (280)
T ss_pred CccHHHHHHHHHH
Confidence 7766666655554
No 317
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=54.68 E-value=12 Score=26.72 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAA 578 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl 578 (775)
-..+++++|.++...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3578999999999999999986
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.42 E-value=55 Score=26.11 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
+.++.++..+.+.|+|++|.+.++.+|.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3678889999999999999999999987
No 319
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=52.41 E-value=4.3e+02 Score=30.66 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHhhcCCHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCCcchhh----hHHhhH-
Q 004081 154 AFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYE----IALLCL- 228 (775)
Q Consensus 154 ~l~~~~~~l~~~~p~~~~~h~l~yl~~~~~~dy~~A~d~LhryFD~~~~~~~~dr~~~~~~~~~~~~~q----yAlLnl- 228 (775)
.++..+..+.+..|.-|=.++...|-+-+.++|..|++.|-..|.....++. +--| .+.++ |-+=|+
T Consensus 63 ~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~------~~Ld--~ni~~l~~df~l~~i~ 134 (549)
T PF07079_consen 63 LMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTES------PWLD--TNIQQLFSDFFLDEIE 134 (549)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccccc------chhh--hhHHHHhhHHHHHHHH
Confidence 3566888888999988889999999999999999999999999988643221 0000 01111 111121
Q ss_pred HHHHHhhCChHHHHHHHHHHHHH
Q 004081 229 GMMHFHFGHPKQALDVLTEAVCL 251 (775)
Q Consensus 229 A~lh~~FG~~~~A~~al~EAi~~ 251 (775)
|---..-|.+.|++..++--|..
T Consensus 135 a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 135 AHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHhcCCcchHHHHHHHHHHH
Confidence 12223578999999888877764
No 320
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.21 E-value=4.6e+02 Score=30.93 Aligned_cols=241 Identities=15% Similarity=0.066 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHH--HhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK--LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~--l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
-+..-+..+...|+.+.|....+...+ ++ ..++..++ ... ...+..-+|..|-..+..+.... |-
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~--~~--~kQ~~~l~~fE~a--w~~v~~~~~~~aad~~~~L~des------dW- 335 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIP--IR--MKQVKSLMVFERA--WLSVGQHQYSRAADSFDLLRDES------DW- 335 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhccc--HH--HHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHhhh------hh-
Confidence 345566777778885555555544333 11 11221221 111 24556667888888888877652 21
Q ss_pred hHHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 556 LKTEASLRHART--------LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 556 ~~~~a~~~~a~l--------l~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
..+...+..|-+ ....|+-+.|-...+......+..|.....=+....+++-+...+. - +...
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-~-~~~~------- 406 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-L-NASI------- 406 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-c-cccc-------
Confidence 122222222222 2224456666555555554444433222222234444444444442 0 1000
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004081 628 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLI-QQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 706 (775)
Q Consensus 628 a~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lL-e~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al 706 (775)
..+.=...++-+|......-+.+..++. +...|.+ .|..+.+.-++++|-++.. .|+...|.
T Consensus 407 --------~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~---~d~Dd~~lk~lL~g~~lR~------Lg~~~~a~ 469 (546)
T KOG3783|consen 407 --------LLASPYYELAYFWNGFSRMSKNELEKMRAELENPKI---DDSDDEGLKYLLKGVILRN------LGDSEVAP 469 (546)
T ss_pred --------cccchHHHHHHHHhhcccCChhhHHHHHHHHhccCC---CCchHHHHHHHHHHHHHHH------cCCHHHHH
Confidence 0010123355566543332113333211 1112222 4788899999999999999 99999999
Q ss_pred HHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHh
Q 004081 707 DPLRQASEE-LQVLEDHELAAEAFYLIAIVFDKLGR-LAEREEAAALFKEYVL 757 (775)
Q Consensus 707 ~~L~~Al~~-f~~l~~~~~~~evl~~LA~l~~~lGd-~~~A~~aAa~f~ql~~ 757 (775)
.++..+.+. ...-.++.-..-++|.+|.++-..|. ..+++.+....|....
T Consensus 470 ~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 470 KCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 998877754 55678899999999999999999998 7777776655555543
No 321
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=50.26 E-value=4.6e+02 Score=30.40 Aligned_cols=102 Identities=13% Similarity=-0.034 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCch-HHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~-~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
.-.+|.-|..+..+|++.+|..++-..-..-...+.. .--.+.-.+ --+....+.+.-...+..+..... .
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~gri--lnAffl~nld~Me~~l~~l~~~~~-----~- 77 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRI--LNAFFLNNLDLMEKQLMELRQQFG-----K- 77 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHH--HHHHHHhhHHHHHHHHHHHHHhcC-----C-
Confidence 3457888999999999999988887654432211110 001111111 245666677766666665554322 1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 587 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~ 587 (775)
.....+-.+.+....|+|+.|++.+...-..
T Consensus 78 --s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 78 --SAYLPLFKALVAYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred --chHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4566777888889999999999888765543
No 322
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.76 E-value=3.6e+02 Score=29.83 Aligned_cols=130 Identities=17% Similarity=0.085 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEE--KFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~--~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~ 550 (775)
|-.+.....||..+-+.++|..|-..|.-... --.......-..+++++. +.++..|+-.+|+.+..+..-+-....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iria-rlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIA-RLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHhhhccc
Q ss_pred CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 004081 551 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI 607 (775)
Q Consensus 551 ~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i 607 (775)
.+....+....-|+++-.+|+|-||...+.+... ++.++......++.-...+
T Consensus 179 --Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~--~ki~~e~~~~~aL~~a~~C 231 (399)
T KOG1497|consen 179 --NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ--RKIVDESERLEALKKALQC 231 (399)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHhHhh
No 323
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=49.35 E-value=3e+02 Score=31.58 Aligned_cols=104 Identities=21% Similarity=0.110 Sum_probs=60.2
Q ss_pred CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcC---c----hH--H----HHHHHhhHHHHHHhcCCHHHHHH
Q 004081 471 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS---K----SR--I----LLLKLQLLHERSLHRGHLKLAQK 537 (775)
Q Consensus 471 ~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~---~----~~--~----~~l~l~l~~~~al~~G~~~~A~~ 537 (775)
..|..+.+..+=|....++|.|..|...+..+++...... . +. + -.+...+. ..++..++-+.|..
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv-~CYL~~rkpdlALn 249 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLV-TCYLRMRKPDLALN 249 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHH-HhhhhcCCCchHHH
Confidence 4677777778888888888888888888888776543211 1 00 1 11111111 35666666666666
Q ss_pred HHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004081 538 VCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHS 583 (775)
Q Consensus 538 ~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~ 583 (775)
+..+...+-+. .+.-.++.+.+..++.+|.+|.+.+.-
T Consensus 250 h~hrsI~lnP~--------~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 250 HSHRSINLNPS--------YFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHhhhhhcCcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554221 233455566666666666666655433
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.14 E-value=4.9e+02 Score=30.90 Aligned_cols=154 Identities=16% Similarity=0.078 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 531 HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL-----AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 531 ~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~-----~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
+...|.+.++.+... + ...+....+.++. ...|.+.|+.++..+.....+ ....+...++..+|
T Consensus 227 ~~~~a~~~~~~~a~~----g------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~-~a~~~~~~a~~~lg 295 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----G------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK-AATKGLPPAQYGLG 295 (552)
T ss_pred hhhHHHHHHHHHHhh----c------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH-HHhhcCCccccHHH
Confidence 456677777776553 2 3345555555543 346999999999988762111 11111333677888
Q ss_pred HHHHhcC-----ChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhHHHhcCCHHH
Q 004081 606 EIHKKSG-----NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGP--NHAKMASNLIQQALPLILGHGGLEL 678 (775)
Q Consensus 606 ~i~~~~G-----~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~--~~f~~Al~lLe~aLp~il~~G~~~l 678 (775)
.+|.+-. ++..|+.++.+|..+ |.+ .+...||.++.. |. ....+|..++..+.-. |.
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~~----~a~~~lg~~~~~-g~~~~d~~~A~~yy~~Aa~~----G~--- 359 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAEL----GNP----DAQYLLGVLYET-GTKERDYRRAFEYYSLAAKA----GH--- 359 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhc----CCc----hHHHHHHHHHHc-CCccccHHHHHHHHHHHHHc----CC---
Confidence 8888755 445577777666544 333 566778888764 44 1237899998887432 33
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 679 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 679 ~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
..+...+|.|+..+ .+...+...|..++.+|.+
T Consensus 360 -~~A~~~la~~y~~G--~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 360 -ILAIYRLALCYELG--LGVERNLELAFAYYKKAAE 392 (552)
T ss_pred -hHHHHHHHHHHHhC--CCcCCCHHHHHHHHHHHHH
Confidence 46778889998885 3345667888888888864
No 325
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=93 Score=32.94 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=73.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 642 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 642 (775)
-.+.-+..-.+|..|+..+.+++.. .+..+.-..+.|.+|++..+.+.+.....+|+.+.- ..+.+..
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~vk~h~ 82 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NLVKAHY 82 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HHHHHHH
Confidence 3455566677899999999988862 223344566778888899999999999998888764 4567778
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhHHHhc
Q 004081 643 TLAELWLSFGPNHAKMASNLIQQALPLILGH 673 (775)
Q Consensus 643 ~La~l~l~lG~~~f~~Al~lLe~aLp~il~~ 673 (775)
.||...+..... ..|+..|.++..+.+++
T Consensus 83 flg~~~l~s~~~--~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 83 FLGQWLLQSKGY--DEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHhhccc--cHHHHHHHHHHHHHhcC
Confidence 788887776665 89999999997766654
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.58 E-value=1.6e+02 Score=35.15 Aligned_cols=99 Identities=19% Similarity=0.130 Sum_probs=51.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
.....+|++..|...+-+. .-+...+.+..+-.+|=.++|++.. .|+..++..
T Consensus 594 qt~vmrrd~~~a~~vLp~I--------------~k~~rt~va~Fle~~g~~e~AL~~s----------~D~d~rFel--- 646 (794)
T KOG0276|consen 594 QTLVLRRDLEVADGVLPTI--------------PKEIRTKVAHFLESQGMKEQALELS----------TDPDQRFEL--- 646 (794)
T ss_pred HHHhhhccccccccccccC--------------chhhhhhHHhHhhhccchHhhhhcC----------CChhhhhhh---
Confidence 4567788888877533222 1223445556666666555555443 233333322
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
.++.|+.+.|..++.++-.... ...||++-+.-|.. ..|.+.+..+
T Consensus 647 ----al~lgrl~iA~~la~e~~s~~K-----------w~~Lg~~al~~~~l--~lA~EC~~~a 692 (794)
T KOG0276|consen 647 ----ALKLGRLDIAFDLAVEANSEVK-----------WRQLGDAALSAGEL--PLASECFLRA 692 (794)
T ss_pred ----hhhcCcHHHHHHHHHhhcchHH-----------HHHHHHHHhhcccc--hhHHHHHHhh
Confidence 2355666666665555443332 22355555555554 5565555555
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.79 E-value=3.4e+02 Score=27.57 Aligned_cols=146 Identities=14% Similarity=0.003 Sum_probs=96.1
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
.-..|.-++|...+..+.. ...+ . =...+.++.+.++...|+..+|+..+.++-..... ...++=-+.+.-|
T Consensus 68 lA~~~k~d~Alaaf~~lek--tg~g--~--YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~--P~~~rd~ARlraa 139 (221)
T COG4649 68 LAQENKTDDALAAFTDLEK--TGYG--S--YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI--PQIGRDLARLRAA 139 (221)
T ss_pred HHHcCCchHHHHHHHHHHh--cCCC--c--chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC--cchhhHHHHHHHH
Confidence 3467888999999998877 2222 1 14568899999999999999999999887642211 1111122445556
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHH
Q 004081 606 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 685 (775)
Q Consensus 606 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~ 685 (775)
.++...|.|+.--+.+. .++- .-..++..++--||..-..-|+. ..|...|..+......-.....+|++.+-
T Consensus 140 ~lLvD~gsy~dV~srve---pLa~--d~n~mR~sArEALglAa~kagd~--a~A~~~F~qia~Da~aprnirqRAq~mld 212 (221)
T COG4649 140 YLLVDNGSYDDVSSRVE---PLAG--DGNPMRHSAREALGLAAYKAGDF--AKAKSWFVQIANDAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHhccccHHHHHHHhh---hccC--CCChhHHHHHHHHhHHHHhccch--HHHHHHHHHHHccccCcHHHHHHHHHHHH
Confidence 66678888865544432 2321 12334555666677667778987 99999999998866655566666665544
Q ss_pred H
Q 004081 686 E 686 (775)
Q Consensus 686 L 686 (775)
+
T Consensus 213 l 213 (221)
T COG4649 213 L 213 (221)
T ss_pred H
Confidence 3
No 328
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=44.84 E-value=86 Score=39.59 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=65.0
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhH-HHHHHhcCC---HHHHHHHHHHHhhhhhcCCCCChhhHHHHH
Q 004081 486 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLL-HERSLHRGH---LKLAQKVCDELGVMASSVTGVDMDLKTEAS 561 (775)
Q Consensus 486 la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~-~~~al~~G~---~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~ 561 (775)
......|+.|+...++....||......-...+.++. -+.+-..|+ +++|..-++.+. +..+...-.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 555 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH---------GGVGAPLEY 555 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc---------CCCCCchHH
Confidence 3346679999999999999998776655444443321 166667776 444444444433 223345558
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMC 588 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~ 588 (775)
+.+|.++.+.|+|+|=++.+.-++..+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 899999999999999999998888643
No 329
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.40 E-value=6.7e+02 Score=32.15 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=71.4
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc-hH--------
Q 004081 443 ATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SR-------- 513 (775)
Q Consensus 443 aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~-~~-------- 513 (775)
.++|..++...+-..----....|-+.-++ ..+..........|.|++=...|.-|.+..++..- ..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKT 1179 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHh
Confidence 578888887776542100001112111111 23444455556678888888888888776554321 11
Q ss_pred --HH----------HHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004081 514 --IL----------LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVA 581 (775)
Q Consensus 514 --~~----------~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l 581 (775)
.. ...++-.+++.+..|.|+.|.-++..... ...++..+..+|+|..|.+..
T Consensus 1180 ~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN----------------~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1180 NRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN----------------FAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred chHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh----------------HHHHHHHHHHHHHHHHHHHHh
Confidence 00 01122233677788888888766665422 445677888899999999888
Q ss_pred HHHH
Q 004081 582 HSLF 585 (775)
Q Consensus 582 ~~aL 585 (775)
+++-
T Consensus 1244 RKAn 1247 (1666)
T KOG0985|consen 1244 RKAN 1247 (1666)
T ss_pred hhcc
Confidence 7663
No 330
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=43.12 E-value=7.7e+02 Score=30.92 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=61.2
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHH
Q 004081 487 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 566 (775)
Q Consensus 487 a~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ 566 (775)
...+.|..|++.+...+.++|...... .++ + -..++.|++++|..+++.+..+ .+.| -..+--+..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~--vLk-a---Lsl~r~gk~~ea~~~Le~~~~~----~~~D----~~tLq~l~~ 85 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAK--VLK-A---LSLFRLGKGDEALKLLEALYGL----KGTD----DLTLQFLQN 85 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHH--HHH-H---HHHHHhcCchhHHHHHhhhccC----CCCc----hHHHHHHHH
Confidence 346778889988888888887433321 222 1 2578899999999887776654 2223 234555677
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 004081 567 TLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 567 ll~~~Gd~~eAl~~l~~aL~ 586 (775)
++..+|.+++|..+++++..
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHh
Confidence 88999999999999999886
No 331
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.06 E-value=5.6e+02 Score=29.03 Aligned_cols=146 Identities=10% Similarity=-0.115 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc-hHH---HHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhc
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SRI---LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 548 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~-~~~---~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~ 548 (775)
+-....-...+..++.+++|..|..+++++..+...-.. .+. ..++.+ ..++.+-++.+|.+.++..+. ..
T Consensus 127 ~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~---y~~WD~fd~~~A~~~L~~~~~--~~ 201 (380)
T TIGR02710 127 NVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRA---YLHWDRFEHEEALDYLNDPLP--ER 201 (380)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHH---HHHHHccCHHHHHHHHhhccc--hh
Confidence 334444455666788899999999999999987432111 222 222333 368888999999999985322 10
Q ss_pred CCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh--HHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 549 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE--NASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 549 ~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~--~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
+........-.+..+..... .-.+.....++. .+.+ +.... -..-++.=|......|+|+.|+-.+-++++
T Consensus 202 ----~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 202 ----LALYQVTSHDELEDVIKRNA-SILPEIIGSRNG-RREA-KRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred ----hhhhhhhhhhHHHHHHHhHH-hhcchhhhccch-hhhh-cccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 10000111111001100000 000000000001 0111 11111 233455566667799999999999999999
Q ss_pred HHHH
Q 004081 627 FCQL 630 (775)
Q Consensus 627 la~~ 630 (775)
+.-+
T Consensus 275 ~~~q 278 (380)
T TIGR02710 275 LIVQ 278 (380)
T ss_pred HHHH
Confidence 8864
No 332
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=41.35 E-value=18 Score=25.73 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.2
Q ss_pred hhhHHhhHHHHHHhhCChHHHHH
Q 004081 221 YEIALLCLGMMHFHFGHPKQALD 243 (775)
Q Consensus 221 ~qyAlLnlA~lh~~FG~~~~A~~ 243 (775)
...|..|||.++...|++++|++
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhcC
Confidence 45689999999999999999963
No 333
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.33 E-value=4.7e+02 Score=30.14 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCch------HHHHHHHhhHHHHHHh---cCCHHHHHHHHHHHh-----
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS------RILLLKLQLLHERSLH---RGHLKLAQKVCDELG----- 543 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~------~~~~l~l~l~~~~al~---~G~~~~A~~~l~~ll----- 543 (775)
.++.-|.+......|++|+.+|-.|.+.|..=..- .+.++.+-|. ..++. --.+++|..-+.++.
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIV-WCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIV-WCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchh-heehhhcccccCChHHHHHHHHHHhhhh
Confidence 35666777788889999999999999999642221 1222222111 11111 122333433333222
Q ss_pred -------hhhhcCCCCCh--hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH--------H
Q 004081 544 -------VMASSVTGVDM--DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA--------E 606 (775)
Q Consensus 544 -------~L~~~~~~~D~--~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA--------~ 606 (775)
.++.--++..| .......++.+.+....|+-++|.+.++.+-....+..........++.+| -
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaRla 323 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDARLA 323 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHHHH
Confidence 22211122223 334455667888999999999999999988766555433333222222211 1
Q ss_pred HHHhcCChhhHHHHHH
Q 004081 607 IHKKSGNAVLGIPYAL 622 (775)
Q Consensus 607 i~~~~G~~~~Al~~l~ 622 (775)
+....|+.+.|..+..
T Consensus 324 LRsc~g~Vd~AvqfI~ 339 (568)
T KOG2561|consen 324 LRSCNGDVDSAVQFII 339 (568)
T ss_pred HHhccccHHHHHHHHH
Confidence 2345677777766654
No 334
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.29 E-value=1.9e+02 Score=33.07 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=50.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF 591 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~ 591 (775)
+.+...|||..|.+.++.+.---..+-...+.....+.+..|-.++-+++|.+|++.+...+....+.
T Consensus 130 Rvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999887653211111112355667788999999999999999999999998765543
No 335
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.24 E-value=5.5e+02 Score=28.67 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=72.9
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCch-HHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKS-RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 567 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~-~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~l 567 (775)
.++.++|++.|+...+.+...... ..+.+...+ .+..+..||..++++.+..........++.++.........-..+
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~-~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEI-ARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 358999999999999988765543 233333222 146779999999999999998876777766665666667778889
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 004081 568 LLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 568 l~~~Gd~~eAl~~l~~aL~ 586 (775)
+...|+|....+..=..+.
T Consensus 167 yk~~~d~a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 167 YKKIGDFASYYRHALLYLG 185 (380)
T ss_pred HHHHHhHHHHHHHHHHHhc
Confidence 9999999988877655554
No 336
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=41.03 E-value=9 Score=45.29 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
+.++..|++..|..++.++.. ..+ .+....+..+..+++....|++.+|++.+...-. .. -......+.+..
T Consensus 32 ~a~l~~g~~~~A~~ll~~l~~--~~L---~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~--~~-l~~~~~~~~~~l 103 (536)
T PF04348_consen 32 RALLQEGDWAQAQALLNQLDP--QQL---SPSQQARYQLLRARLALAQGDPEQALSLLNAQDL--WQ-LPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHHhccc--ccC---ChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCc--cc-CCHHHHHHHHHH
Confidence 467899999999999998874 222 3445778889999999999999999999974211 11 123445777888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
+|.++...|++..|...+.+.-.
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp -----------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Confidence 99999999999888766554333
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=40.83 E-value=1.5e+02 Score=29.97 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHhh-cccchhHHHHHHHHHHHHHhcCC----hhhHHHHHHHHHHHHH
Q 004081 558 TEASLRHARTLLAANQF---SEAAAVAHSLFCMCYK-FNLQVENASVLLLLAEIHKKSGN----AVLGIPYALASLSFCQ 629 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~---~eAl~~l~~aL~~~~~-~gd~~~~a~aLl~lA~i~~~~G~----~~~Al~~l~~AL~la~ 629 (775)
++.+++=+..++.+.++ .++.+++++++.-+++ +...+...+++..+|.+|...|. ..+|-.++.+|..-..
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 45667777777666555 4566777776655443 22345567888999999877664 2345555655555443
No 338
>PF12854 PPR_1: PPR repeat
Probab=40.67 E-value=49 Score=23.46 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIA 502 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a 502 (775)
...+..|...+++.|+.++|.+++++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 467788888999999999999998763
No 339
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=39.60 E-value=59 Score=24.14 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYK 590 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~ 590 (775)
.++..+|.+-+..++|++|++-+.+++.+.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999986554
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=39.24 E-value=2.3e+02 Score=29.22 Aligned_cols=82 Identities=15% Similarity=-0.028 Sum_probs=57.2
Q ss_pred HhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 004081 527 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 606 (775)
Q Consensus 527 l~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~ 606 (775)
+.+-.-..|...+-++..- +.+. .++..+.+|.++. ..|...|+.++.++++... .+......++..+|.
T Consensus 117 Wsr~~d~~A~~~fL~~E~~-~~l~------t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~--~~~~~n~eil~sLas 186 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGT-PELE------TAELQYALATYYT-KRDPEKTIQLLLRALELSN--PDDNFNPEILKSLAS 186 (203)
T ss_pred hhccCcHHHHHHHHHHcCC-CCCC------CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHH
Confidence 3342335566655555442 2222 3566777788776 7789999999999998665 333566888999999
Q ss_pred HHHhcCChhhHH
Q 004081 607 IHKKSGNAVLGI 618 (775)
Q Consensus 607 i~~~~G~~~~Al 618 (775)
++.+.|+++.|-
T Consensus 187 ~~~~~~~~e~AY 198 (203)
T PF11207_consen 187 IYQKLKNYEQAY 198 (203)
T ss_pred HHHHhcchhhhh
Confidence 999999998774
No 341
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=39.19 E-value=2e+02 Score=25.39 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
...+...+|..+...|+++.|+..+.+.+...+..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 34556666666666666666666666555554433
No 342
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.88 E-value=4.8e+02 Score=27.33 Aligned_cols=192 Identities=13% Similarity=0.018 Sum_probs=104.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK-KSGNAVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~-~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
+..+|.+.-..|+|++.++.+.+++.. .......=..++..+|- ..|....++..+.....-....|.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-----~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~ 78 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-----NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKL 78 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-----SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-----CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHH
Confidence 567788899999999999999998874 22112222223333331 222223334433332222222223322222
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH-HhHHHhcCCHHHHHHHHHHHHHhhh--cCCCCC--CCCChHHHHHHHHHHHH
Q 004081 640 ATLTLAELWLSFGPNHAKMASNLIQQA-LPLILGHGGLELRARAFIAEAKCLL--SDPSFS--VSQNPEAVLDPLRQASE 714 (775)
Q Consensus 640 al~~La~l~l~lG~~~f~~Al~lLe~a-Lp~il~~G~~~l~A~a~~~LAr~~l--A~~~~~--~~g~~~~Al~~L~~Al~ 714 (775)
+....-.+-..+-. .+.+.+.+++.. +|.. .+...+.-.+-.-|..++ +.-..+ ...-.++|...+++|.+
T Consensus 79 i~~yk~kie~EL~~-~C~eii~lId~~Lip~~---~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 154 (236)
T PF00244_consen 79 IKDYKKKIEDELID-ICNEIIRLIDKSLIPSA---TSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALE 154 (236)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHTCHHHS----SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhccc---cchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHH
Confidence 22222222222222 136677777774 3442 243333333333442222 111110 01124689999999999
Q ss_pred HHHh-c--cCHHHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHhhhcc
Q 004081 715 ELQV-L--EDHELAAEAFYLIAIVFDKLGRLAEREE-AAALFKEYVLALEN 761 (775)
Q Consensus 715 ~f~~-l--~~~~~~~evl~~LA~l~~~lGd~~~A~~-aAa~f~ql~~~~~~ 761 (775)
.... + -+|....-++..=...|.-+|++..|-+ +-.+|......+..
T Consensus 155 ~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~ 205 (236)
T PF00244_consen 155 IAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDT 205 (236)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGG
T ss_pred HHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc
Confidence 9987 3 4688888888887778899999999976 66778887776663
No 343
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.74 E-value=5.6e+02 Score=27.88 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=37.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhc-CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004081 644 LAELWLSFGPNHAKMASNLIQQALPLILGH-GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 710 (775)
Q Consensus 644 La~l~l~lG~~~f~~Al~lLe~aLp~il~~-G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~ 710 (775)
|+++.-.++..+ .+=...++.++.+-.+. +..++-...+.++|...+. .+++.+|..++-
T Consensus 91 l~~ll~e~~~~e-per~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~------e~~~~~a~~HFl 151 (312)
T KOG3024|consen 91 LAELLGEADPSE-PERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWT------EDNVEEARRHFL 151 (312)
T ss_pred HHHHHhhcCCCc-cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh------cccHHHHHhHhh
Confidence 555555555541 23345677777777776 5566666777788888877 555555555443
No 344
>PRK10304 ferritin; Provisional
Probab=36.79 E-value=86 Score=31.08 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=49.4
Q ss_pred HHHHHHhhhhhcCCCCCCCCCCCCCCCCcchhhhHHhhHHHHHHhhCChHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Q 004081 190 LENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAI 268 (775)
Q Consensus 190 ~d~LhryFD~~~~~~~~dr~~~~~~~~~~~~~qyAlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe~~D~~cL~~al~wl 268 (775)
+++-.++++|.....|....... ..+..-.---+..+...+.|=.++...+.+.+.+|++.+|..+.++. .|+
T Consensus 51 ~~HA~kl~~~i~~rgg~~~~~~i-----~~p~~~~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl-~~f 123 (165)
T PRK10304 51 MTHMQRLFDYLTDTGNLPRINTV-----ESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFL-QWY 123 (165)
T ss_pred HHHHHHHHHHHHHcCCCeeeCCC-----CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHH-HHH
Confidence 55666788998644432222110 00000111135778888999999999999999999999999999995 484
No 345
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.57 E-value=4.4e+02 Score=31.32 Aligned_cols=134 Identities=15% Similarity=0.058 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-----cCChhhHHHHHHHHHH---HHHHhCCcHHHHHHHHHHH
Q 004081 574 FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-----SGNAVLGIPYALASLS---FCQLLNLDLLKASATLTLA 645 (775)
Q Consensus 574 ~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~-----~G~~~~Al~~l~~AL~---la~~~g~~~~~A~al~~La 645 (775)
..+|...++.+.. .+.+.+...+|.++.. ..+++.|+.++..|.. -+...+ ...+...||
T Consensus 228 ~~~a~~~~~~~a~--------~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAK--------LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHh--------hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHH
Confidence 4566666665543 3445566666766654 3577899999988877 233333 234667789
Q ss_pred HHHHHcCCC---hHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCH
Q 004081 646 ELWLSFGPN---HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH 722 (775)
Q Consensus 646 ~l~l~lG~~---~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~ 722 (775)
.++..-... ....|+.++..+... |. -.+.+.||.|+..+. ...+..+|..++..|..
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~----~~a~~~lg~~~~~g~---~~~d~~~A~~yy~~Aa~-------- 356 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAEL----GN----PDAQYLLGVLYETGT---KERDYRRAFEYYSLAAK-------- 356 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhc----CC----chHHHHHHHHHHcCC---ccccHHHHHHHHHHHHH--------
Confidence 998764322 126688887777433 44 357788899988844 23456677777777753
Q ss_pred HHHHHHHHHHHHHHHh
Q 004081 723 ELAAEAFYLIAIVFDK 738 (775)
Q Consensus 723 ~~~~evl~~LA~l~~~ 738 (775)
.+..++.+.+|..|..
T Consensus 357 ~G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 357 AGHILAIYRLALCYEL 372 (552)
T ss_pred cCChHHHHHHHHHHHh
Confidence 3444556666665543
No 346
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.35 E-value=3.3e+02 Score=28.60 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhhcCCC---CCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004081 676 LELRARAFIAEAKCLLSDPS---FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 731 (775)
Q Consensus 676 ~~l~A~a~~~LAr~~lA~~~---~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~ 731 (775)
-..+|+.|-.+|..++.+.+ ....+++..|+.+|++|.+...++|-.....++-..
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~ 223 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERR 223 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 34667778888887764221 122577889999999999999999988877665443
No 347
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=36.06 E-value=7.9e+02 Score=29.12 Aligned_cols=86 Identities=21% Similarity=0.166 Sum_probs=65.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc-chhHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLL 602 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd-~~~~a~aLl 602 (775)
+..+..|+...|..++.++-. .+ .+..+.+..+..+++.++..++..|+..+....- ... ....+|-+.
T Consensus 71 ~al~~e~k~~qA~~Ll~ql~~---~L---td~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~----~~ls~~Qq~Ry~q 140 (604)
T COG3107 71 RALVEEGKTAQAQALLNQLPQ---EL---TDAQRAEKSLLAAELALAQKQPAAALQQLAKLLP----ADLSQNQQARYYQ 140 (604)
T ss_pred HHHHHcCChHHHHHHHHhccc---cC---CHHHHHHHHHHHHHHHHhccChHHHHHHHhhcch----hhcCHHHHHHHHH
Confidence 567899999999999999862 11 4566888999999999999999999999977653 112 223577788
Q ss_pred HHHHHHHhcCChhhHHH
Q 004081 603 LLAEIHKKSGNAVLGIP 619 (775)
Q Consensus 603 ~lA~i~~~~G~~~~Al~ 619 (775)
.++.+....|+.-.+..
T Consensus 141 ~~a~a~ea~~~~~~a~r 157 (604)
T COG3107 141 ARADALEARGDSIDAAR 157 (604)
T ss_pred HHHHHHhcccchHHHHH
Confidence 88888888877655443
No 348
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.23 E-value=4.3e+02 Score=28.75 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHH---HHHHHHHHhcCChhhH-HHHHHHHHHHHHHh-CCc
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL---LLLAEIHKKSGNAVLG-IPYALASLSFCQLL-NLD 634 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aL---l~lA~i~~~~G~~~~A-l~~l~~AL~la~~~-g~~ 634 (775)
..+--+....+.++...|..++-..++..+... -+.-+ -+++.+.-..+..+.. -....+++..+.+. +-+
T Consensus 48 L~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~----~ad~~~~~anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k 123 (312)
T KOG3024|consen 48 LLYDGALCFFKLKQRGSAADLLVLVLEVLEKAE----VADSLLKVANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGK 123 (312)
T ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH----hhHhHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCC
Confidence 334444555555555555555544444322210 01111 1233333344444434 34556677777665 556
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQ 665 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~ 665 (775)
++.......||..+..-+.. .+|..++--
T Consensus 124 ~G~p~lH~~la~~l~~e~~~--~~a~~HFll 152 (312)
T KOG3024|consen 124 YGHPELHALLADKLWTEDNV--EEARRHFLL 152 (312)
T ss_pred CCCHHHHHHHHHHHHhcccH--HHHHhHhhh
Confidence 66667777788888777766 788877643
No 349
>PRK10941 hypothetical protein; Provisional
Probab=34.91 E-value=1.7e+02 Score=31.50 Aligned_cols=70 Identities=10% Similarity=0.022 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
.......+.++-..++..++++.|++..+.++...- ....-..-+|.+|.+.|.+..|...+..-++.|-
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P------~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP------EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 444556777888889999999999999999987432 2223344588889999999999999888777773
No 350
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=7e+02 Score=27.90 Aligned_cols=101 Identities=18% Similarity=0.049 Sum_probs=77.7
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh--HHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE--NASVLLL 603 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~--~a~aLl~ 603 (775)
.-..+|.++|.+.+++...-..... .|+.........+++++..||..++.+.+...-...+....... ....+..
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~--e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYK--EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3445599999999999888655544 55677888889999999999999999999988877776555444 4556777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
-...|..-|++.....++.+=|...
T Consensus 163 ssqYyk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhccc
Confidence 7778888899888877776655444
No 351
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=34.37 E-value=1e+02 Score=39.06 Aligned_cols=99 Identities=15% Similarity=-0.043 Sum_probs=70.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.-+....|+.|...+++...-++ | +.---++.++.|..++.+-.-..--+.+.+++..+.......+..-=++.+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFP--G---RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCC--C---cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 44566778888888888877655 2 112356777777777655433333367778888887777777777779999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la 628 (775)
|.||.+.|++.+-+..+.-|+...
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhc
Confidence 999999999998887777666543
No 352
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=33.90 E-value=3.9e+02 Score=24.84 Aligned_cols=26 Identities=4% Similarity=-0.147 Sum_probs=21.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004081 482 LIQHLAVFKGYKEAFSALKIAEEKFL 507 (775)
Q Consensus 482 LA~~la~~G~y~eAl~~L~~a~~~f~ 507 (775)
+|.-++.+|++-.|+.+++.....-.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~ 27 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG 27 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc
Confidence 45667889999999999998776554
No 353
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.46 E-value=7.2e+02 Score=28.16 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHH
Q 004081 435 VGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI 514 (775)
Q Consensus 435 ~g~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~ 514 (775)
+.+....--..|.++|+..-=.....+- ..+.+....+..-...--+++++.++|-++-|..+.+++...-+ ....+.
T Consensus 77 l~~~~K~~h~s~sk~~K~ldk~~~~di~-~~~~~~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~-~~~~~~ 154 (394)
T KOG2817|consen 77 LASTHKDLHGSLSKFGKALDKNFNPDIS-SVYRNSVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSED-ESKSRT 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchh-hHhhcCcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCc-chhhhh
Confidence 4445556667788888832222222221 12233333444444566778888999999999999988775433 122333
Q ss_pred HHHHH-hhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChH--HHHHHHHHHHH
Q 004081 515 LLLKL-QLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFS--EAAAVAHSLFC 586 (775)
Q Consensus 515 ~~l~l-~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~--eAl~~l~~aL~ 586 (775)
..+.+ +| -.++..|+...|.+++..-..- +...+...++......-.-.+..|..+ +|+.+.+.-.+
T Consensus 155 ~F~el~~I--v~~lke~Dl~~aLeWa~~~~~~---L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~ 224 (394)
T KOG2817|consen 155 EFVELNQI--VEALKERDLEPALEWAESNRQK---LKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFA 224 (394)
T ss_pred hHHHHHHH--HHHHHhccchhHHHHHHHhhhh---hccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcC
Confidence 33333 23 3789999999999988875432 222244456666666666667778777 99998876554
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=32.97 E-value=1.2e+02 Score=30.76 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHH---HhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004081 638 ASATLTLAELWLSFGPN-HAKMASNLIQQALPLI---LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 713 (775)
Q Consensus 638 A~al~~La~l~l~lG~~-~f~~Al~lLe~aLp~i---l~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al 713 (775)
+.++.+-|.+++.+.+. ...++.+++++++.-. +.... ....++..+|.++..-+. ...+..+|.+++++|.
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~--l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP--NKHDALWCLGNAYTSLAF--LTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHH--H---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHh--hcCChHHHHHHHHHHH
Confidence 55555555555554331 0133444444443222 12222 233455555555544110 1355678888999999
Q ss_pred HHHHhcc
Q 004081 714 EELQVLE 720 (775)
Q Consensus 714 ~~f~~l~ 720 (775)
+.|++.-
T Consensus 101 ~~FqkAv 107 (186)
T PF06552_consen 101 EYFQKAV 107 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887553
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=32.74 E-value=6.8e+02 Score=27.27 Aligned_cols=131 Identities=9% Similarity=-0.033 Sum_probs=85.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhhcC-----chH--HHHHHHhhH-HHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 485 HLAVFKGYKEAFSALKIAEEKFLSVS-----KSR--ILLLKLQLL-HERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 485 ~la~~G~y~eAl~~L~~a~~~f~~~~-----~~~--~~~l~l~l~-~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.+.-.-+|..|+.+.++..+...... +.. .+...+.+. +...-..|+|.++....-+=... .. + .
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~---pE--k--l 116 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV---PE--K--L 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC---cc--c--C
Confidence 33445688899999999888763221 111 222223321 24556789999988766654442 11 2 3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 622 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~ 622 (775)
.+.++-.=+.+|...|++...++....-+..-...+.+.-..-+.+-+-+|+.-.|...+|.+...
T Consensus 117 PpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 PPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 456666677788999999999999998886433333333345566667778889999999988774
No 356
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=32.64 E-value=4.8e+02 Score=25.51 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCch----------------------------H-H---HHHHHhh-HHH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS----------------------------R-I---LLLKLQL-LHE 524 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~----------------------------~-~---~~l~l~l-~~~ 524 (775)
.....|+....+|+.++|...|+++...+...... . . -.....+ ...
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 34556777777899999999999888776432110 0 0 0011111 115
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
..+..|+...|.+.+..+..=..-....=|..........+.-++..|+|.+|-..+..++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88999999999998887654100000001666778888999999999999999999998875
No 357
>PRK10941 hypothetical protein; Provisional
Probab=31.33 E-value=2.6e+02 Score=30.05 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=47.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK 590 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~ 590 (775)
..++..++|..|....+.++.+.+ .|| .-..-+|.++..+|.+..|..-++..++.|.+
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P----~dp----~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDP----EDP----YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCC----CCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 477899999999999999998744 242 33555888899999999999999998887753
No 358
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.82 E-value=92 Score=25.66 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh--HHHHHHHHHHHHHhcCChhhHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE--NASVLLLLAEIHKKSGNAVLGIPY 620 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~--~a~aLl~lA~i~~~~G~~~~Al~~ 620 (775)
..+..+...|+|-+|.+.++.+=..+ .++... +.-+++..|.++.+.|++..|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~--~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAA--PGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT---CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHC--CcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566788999999999998874311 122222 333455666777888998877654
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.47 E-value=8.8e+02 Score=33.87 Aligned_cols=109 Identities=16% Similarity=0.037 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh---
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--- 631 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~--- 631 (775)
....++++..|++....|+++.|...+-.+.+ .....+.+..|.+.+..|+...|+..+++.++++..-
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e--------~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKE--------SRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhh--------cccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence 34789999999999999999999988876654 2267788999999999999999999999999888532
Q ss_pred --------CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 632 --------NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 632 --------g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
.+-.....+.+.++.-....|..+-.+-+..+..+.....
T Consensus 1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred CccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1222333456655555556666555666677777766665
No 360
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=30.16 E-value=1.1e+02 Score=20.69 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEE 504 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~ 504 (775)
.+..+...++..|+++.|..++++..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455667777888899998888887664
No 361
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.46 E-value=8e+02 Score=27.47 Aligned_cols=131 Identities=12% Similarity=0.012 Sum_probs=84.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhcCchHH-HHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHH
Q 004081 484 QHLAVFKGYKEAFSALKIAEEKFLSVSKSRI-LLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 561 (775)
Q Consensus 484 ~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~-~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~ 561 (775)
..+|..+=+++++.++++++..-. .|..+. ..| ...-. ..--..-||..-..+|+-+..+.+ +| .+.
T Consensus 264 r~lW~r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~-a~~aedtDW~~I~aLYdaL~~~ap-----SP----vV~ 332 (415)
T COG4941 264 RSLWDRALIDEGLALLDRALASRR-PGPYQLQAAIAALHAR-ARRAEDTDWPAIDALYDALEQAAP-----SP----VVT 332 (415)
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHh-hcccCCCChHHHHHHHHHHHHhCC-----CC----eEe
Confidence 345566668899999999886543 444331 111 12110 122345689998889988887755 22 244
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
++.+..+...--...++..++.+... +--.+-...+-.+|.+..+.|+.++|..-+.+|+.+++
T Consensus 333 LNRAVAla~~~Gp~agLa~ve~L~~~----~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 333 LNRAVALAMREGPAAGLAMVEALLAR----PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred ehHHHHHHHhhhHHhHHHHHHHhhcc----cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 55555555555577788888776652 11222233455678888899999999999999999985
No 362
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=29.21 E-value=1.3e+02 Score=24.09 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004081 726 AEAFYLIAIVFDKLGRLAEREEAAALF 752 (775)
Q Consensus 726 ~evl~~LA~l~~~lGd~~~A~~aAa~f 752 (775)
.+.+|.+|..|-.+|+...|.++....
T Consensus 1 Rd~lY~lAig~ykl~~Y~~A~~~~~~l 27 (53)
T PF14853_consen 1 RDCLYYLAIGHYKLGEYEKARRYCDAL 27 (53)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 468999999999999999999866443
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.20 E-value=4.4e+02 Score=31.66 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=36.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
+.++..|+++.|.++..++.+- .=+..++++.+..|++.-|.+++..+..
T Consensus 645 elal~lgrl~iA~~la~e~~s~-------------~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEANSE-------------VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhcch-------------HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 5778888888888776665331 2255678888888888888888866543
No 364
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.66 E-value=4.3e+02 Score=25.68 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSE---AAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~e---Al~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
..+..++.++.+....+-++ .+..++..+. ...+..+...+..+|--|.+.++|++++.++...++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 56778888988887765544 4455555443 3456666778888999999999999998887655544
No 365
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=28.20 E-value=5.1e+02 Score=31.33 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHH---HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS---VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~---aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
.+++.++.-.|.|.||.+++.+.=.. .+-.+.. -+.-.++=+...|.+++--.+..+=.+.|+....+...|
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~e-----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAA 710 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHE-----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAA 710 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCch-----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHH
Confidence 45677777888888888776432110 1111111 145667778899999888888888788888888877665
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQ 665 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~ 665 (775)
+ +++..|+. .+|..++-+
T Consensus 711 E-------mLiSaGe~--~KAi~i~~d 728 (1081)
T KOG1538|consen 711 E-------MLISAGEH--VKAIEICGD 728 (1081)
T ss_pred H-------Hhhcccch--hhhhhhhhc
Confidence 5 44567887 888776544
No 366
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.09 E-value=7.8e+02 Score=28.22 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=34.5
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhh
Q 004081 466 FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGV 544 (775)
Q Consensus 466 ~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~ 544 (775)
+.+...-|..-.++.-++.++...|.++.|+...-++..--.. . -+....++.+ ..+.+..|+|..-......+.+
T Consensus 140 yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-~-khvInm~ln~-i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 140 YKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-A-KHVINMCLNL-ILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-h-HHHHHHHHHH-HHHHHhhcchhhhhhHHHHHHh
Confidence 4444445555556666666666666666655554432211110 0 0111112221 1455555555555555555544
No 367
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=27.86 E-value=3.8e+02 Score=27.10 Aligned_cols=80 Identities=20% Similarity=0.061 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
...+..+...+++..+++..|...+..+-.......+...+.......|.+....|+...+.....+++.+....|.+..
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~~~~ 206 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGYPTL 206 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 44567777888889999999999998876655333455567777888888888899988888899999999887776543
No 368
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.57 E-value=2.5e+02 Score=24.79 Aligned_cols=30 Identities=30% Similarity=0.263 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCM 587 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~ 587 (775)
..+.+.++..++..|++++|++.+-.++..
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999999777763
No 369
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=27.21 E-value=1.1e+02 Score=21.01 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 681 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 681 ~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
.+.+.||.++..+. +...++.+|..++++|.+
T Consensus 2 ~a~~~lg~~~~~G~--g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGL--GVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCC--CCCcCHHHHHHHHHHHHH
Confidence 46788898888743 335688999999999864
No 370
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.85 E-value=4.5e+02 Score=27.61 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHH
Q 004081 481 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 560 (775)
Q Consensus 481 ~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a 560 (775)
+|..-+...-+|.+|.+.+..-...-+..-+..-.--++++ ..++..|+..+|.+.+.++.. .+-+.|.+..+..
T Consensus 31 ~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~I--r~~I~~G~Ie~Aie~in~l~P---eiLd~n~~l~F~L 105 (228)
T KOG2659|consen 31 RLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQI--RRAIEEGQIEEAIEKVNQLNP---EILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHH--HHHHHhccHHHHHHHHHHhCh---HHHccchhHHHHH
Confidence 45555555667777766654333222211111111112344 678999999999998887754 4444566677777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
..++-.=+++.|...+|++.++.-+..+-
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~~LA~~a 134 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQTKLAPFA 134 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHccccc
Confidence 77777777999999999999987776443
No 371
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=26.69 E-value=1.5e+02 Score=29.05 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=69.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCC---------------------C--------C--hhhHHHHHHHHHHHHHHcC
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTG---------------------V--------D--MDLKTEASLRHARTLLAAN 572 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~---------------------~--------D--~~~~~~a~~~~a~ll~~~G 572 (775)
+.++..|+.++|..++.++......+.. . + +..........+.-.+..|
T Consensus 10 r~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l~~g 89 (155)
T PF10938_consen 10 RLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELLKKG 89 (155)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHHhCC
Confidence 4688999999999999987765331110 0 1 2334566677888899999
Q ss_pred ChHHHHHHHHHHHHHHh--hcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 573 QFSEAAAVAHSLFCMCY--KFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 573 d~~eAl~~l~~aL~~~~--~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
+...|.+.+..+-.... ....+......-+..|..++..|.+.+|-..+..|++
T Consensus 90 ~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 90 DKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999876543211 1223445677788899999999999999888877763
No 372
>PRK06770 hypothetical protein; Provisional
Probab=26.63 E-value=77 Score=31.79 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=51.5
Q ss_pred cccCHHHHHHHHHHHHHH----HHhcC-CCCChHHHHHHHHHHHHhCCCchHHHHHHHHHHhhcCCHHHHHHHHHHhhhh
Q 004081 125 FLRTNWQMQGYLMEQADA----IEKHG-SSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDY 199 (775)
Q Consensus 125 ~~~s~~~~~~~l~~q~~~----l~~~~-~~~~~~~l~~~~~~l~~~~p~~~~~h~l~yl~~~~~~dy~~A~d~LhryFD~ 199 (775)
..||...+...+=...++ =++-| ..++++.++...+.|.... .-..-.|++-|+.|..|||.++++. |.||=+
T Consensus 65 ~~~tE~~ii~~MH~MtHQKV~A~~KwG~~~mT~enI~~l~~~i~~sn-~~~k~~yl~IL~RW~~GDFS~~Ved-HN~iW~ 142 (180)
T PRK06770 65 FKSTEEEIITAMHKMTHQKVKADEKWGFIEMTQENIEKLKDIINSSN-FVQKEELLAILERWEKGDFSKIVED-HNYLWK 142 (180)
T ss_pred cccCHHHHHHHHHHHHhhhhhhhcccceEecCHHHHHHHHHHHhccc-hhhHHHHHHHHHHHhcCCcchHHHH-HHHHHH
Confidence 446666666655555543 23445 4688888887777655322 3335899999999999999999876 777766
Q ss_pred hc
Q 004081 200 SA 201 (775)
Q Consensus 200 ~~ 201 (775)
..
T Consensus 143 ~q 144 (180)
T PRK06770 143 LQ 144 (180)
T ss_pred Hc
Confidence 53
No 373
>PF13041 PPR_2: PPR repeat family
Probab=26.42 E-value=1.2e+02 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEK 505 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~ 505 (775)
.++..+...+.+.|++++|..++++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45677778888899999999999988864
No 374
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.32 E-value=3.2e+02 Score=31.19 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=20.6
Q ss_pred HhhhcCCC----CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004081 463 ATCFSDGS----SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAE 503 (775)
Q Consensus 463 ~~~~~~~a----~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~ 503 (775)
.+||.+.- +..-...++.|+..+-...|+|.....+..+|.
T Consensus 170 lr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 170 LRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 45665521 233444455555555555566555555555444
No 375
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=26.05 E-value=1.9e+02 Score=21.60 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 004081 156 ELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLH 194 (775)
Q Consensus 156 ~~~~~~l~~~~p~~~~~h~l~yl~~~~~~dy~~A~d~Lh 194 (775)
...+.+|+...|+++....-.-|.. +.||...|++.|-
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~-~~g~ve~~i~~LL 40 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEA-NNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 4578888899999988766555554 7899999999874
No 376
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.85 E-value=1.3e+02 Score=31.73 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=46.7
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
....||...|.+++.|++.++++ -+..+.+.+.+....|+++.|.+.+++.++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~--------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE--------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch--------hhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 45679999999999999998662 456799999999999999999999999987
No 377
>PRK12798 chemotaxis protein; Reviewed
Probab=25.70 E-value=1.1e+03 Score=27.21 Aligned_cols=220 Identities=14% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHH
Q 004081 483 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 562 (775)
Q Consensus 483 A~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~ 562 (775)
+..+...|+-.+.+..| .-.....+-...+..++ ++...|+-.+|.+.+........ ++..-..+-+
T Consensus 87 a~iy~lSGGnP~vlr~L-----~~~d~~~~~d~~L~~g~---laY~~Gr~~~a~~~La~i~~~~l-----~~~lg~~laL 153 (421)
T PRK12798 87 ALIYLLSGGNPATLRKL-----LARDKLGNFDQRLADGA---LAYLSGRGREARKLLAGVAPEYL-----PAELGAYLAL 153 (421)
T ss_pred HHhhHhcCCCHHHHHHH-----HHcCCCChhhHHHHHHH---HHHHcCCHHHHHHHhhcCChhhc-----CchhhhHHHH
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 642 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 642 (775)
-.+.+ +..-|...|+++++++--.+- |.-..++ ++..--.|-...|+.+++..+. ....+++....+...-.-
T Consensus 154 v~a~l-~~~~dP~~Al~~lD~aRLlaP--GTLvEEA-ALRRsi~la~~~g~~~rf~~la---~~Y~rRF~~S~YA~~F~~ 226 (421)
T PRK12798 154 VQGNL-MVATDPATALKLLDQARLLAP--GTLVEEA-ALRRSLFIAAQLGDADKFEALA---RNYLRRFRHSPYASQFAQ 226 (421)
T ss_pred HHHHH-hcccCHHHHHHHHHHHHHhCC--chHHHHH-HHHHhhHHHHhcCcHHHHHHHH---HHHHHHhccCchHHHHHH
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCH
Q 004081 643 TLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH 722 (775)
Q Consensus 643 ~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~ 722 (775)
.+..+...+++. ..--. +.-++..-++..+-..|..+|+.-+- .|+.+-|.-.-++|+.+.......
T Consensus 227 ~F~~~~~~~~d~--~~~~~-----l~~~ls~~d~~~q~~lYL~iAR~Ali------~Gk~~lA~~As~~A~~L~~~~~~~ 293 (421)
T PRK12798 227 RFVDLVVRLDDE--IRDAR-----LVEILSFMDPERQRELYLRIARAALI------DGKTELARFASERALKLADPDSAD 293 (421)
T ss_pred HHHHHHHhcccc--ccHHH-----HHHHHHhcCchhHHHHHHHHHHHHHH------cCcHHHHHHHHHHHHHhccCCCcc
Q ss_pred HHHHHHHHHHHHH
Q 004081 723 ELAAEAFYLIAIV 735 (775)
Q Consensus 723 ~~~~evl~~LA~l 735 (775)
...+..|...+.+
T Consensus 294 ~~ra~LY~aaa~v 306 (421)
T PRK12798 294 AARARLYRGAALV 306 (421)
T ss_pred hHHHHHHHHHHcc
No 378
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.60 E-value=49 Score=38.03 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
...+--++|+.|..++..++.+ ||- -+...-+++..++..++|..|+.-+..+++ +....++++..
T Consensus 12 n~~l~~~~fd~avdlysKaI~l-------dpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie------~dP~~~K~Y~r 77 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL-------DPN-CAIYFANRALAHLKVESFGGALHDALKAIE------LDPTYIKAYVR 77 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc-------CCc-ceeeechhhhhheeechhhhHHHHHHhhhh------cCchhhheeee
Confidence 3567788999999999999987 332 234556677888999999999999988886 33667889999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+|....+.+++-+|+..++....++
T Consensus 78 rg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 78 RGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred ccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 9999999999999998887766655
No 379
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=25.17 E-value=1.2e+02 Score=20.13 Aligned_cols=26 Identities=27% Similarity=0.147 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEE 504 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~ 504 (775)
+..+...++..|++++|..++++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556667777888888888776654
No 380
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.75 E-value=2.7e+02 Score=22.86 Aligned_cols=55 Identities=20% Similarity=0.030 Sum_probs=35.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVA 581 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l 581 (775)
..+..|+|-+|.+.++.+-.-.+ ++...-.+..+....+.++.++|+...|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~--~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAP--GPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT---CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCC--cchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 56788899999888888765222 21123334455566677778889888887653
No 381
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=24.13 E-value=7.6e+02 Score=29.27 Aligned_cols=91 Identities=11% Similarity=0.083 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhc-------ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCYKF-------NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~-------gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
.+...+-++..|.-+++++++-.+ ..|-+. ..-.|+++.+...+.+|..+|.+..|...+.+|+.-..+
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa-~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e--- 229 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWA-SICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE--- 229 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH-HHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH---
Confidence 567788888889999999988664 445442 234688999999999999999999999999999887763
Q ss_pred cHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHH
Q 004081 634 DLLKASATLTLAELWLS--FGPNHAKMASNLIQQAL 667 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~--lG~~~f~~Al~lLe~aL 667 (775)
|..++.. .+.. .+..+++.++.
T Consensus 230 ----------L~qLE~ms~s~~s--~es~~~f~eA~ 253 (542)
T PF14858_consen 230 ----------LRQLENMSSSPPS--EESQRIFREAT 253 (542)
T ss_pred ----------HHHHHhcccCCCC--HHHHHHHHHHH
Confidence 4444432 3445 77788887774
No 382
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=23.73 E-value=5.2e+02 Score=31.17 Aligned_cols=68 Identities=24% Similarity=0.206 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhhcCchHHHH------HHHhhHHHHHHhcCCHHHHHHHHHHHhh
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEK-FLSVSKSRILL------LKLQLLHERSLHRGHLKLAQKVCDELGV 544 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~-f~~~~~~~~~~------l~l~l~~~~al~~G~~~~A~~~l~~ll~ 544 (775)
-..+|+....++++..|+|.+|..+|-...-. .-...+...++ ..+++ .+++.|...+|..++..+..
T Consensus 454 ~r~rA~Lc~IY~~AL~d~~~~ARDllLmShlqe~I~~~D~~tQILyNR~~vQLGL---cAFR~G~I~eah~~L~el~~ 528 (595)
T PF05470_consen 454 LRTRAMLCHIYHHALHDRYYEARDLLLMSHLQESIQHSDISTQILYNRAMVQLGL---CAFRAGLIKEAHQCLSELCS 528 (595)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhccCHHHHHHHhHHHHHHHH---HHHHcCCHHHHHHHHHHHHc
Confidence 45677888889999999999999987543211 11112222222 23444 89999999999999988865
No 383
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=1.5e+03 Score=28.35 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=40.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLF 585 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL 585 (775)
......-|.-|..+..... .|++...++...-|..+..+|||++|+..+-+.+
T Consensus 343 iL~kK~ly~~Ai~LAk~~~--------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQH--------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHhhhHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 4455666777776555432 2777888999999999999999999999886665
No 384
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.36 E-value=1e+03 Score=26.17 Aligned_cols=119 Identities=13% Similarity=-0.023 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 004081 616 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 695 (775)
Q Consensus 616 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~ 695 (775)
+-+..+.+++.-..+-+-....+++..++|+-|+++|+. +.+.+.+.+.+......|-..+. ++...|..+-
T Consensus 93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~--~ng~~~~~~~~~~a~stg~KiDv---~l~kiRlg~~--- 164 (412)
T COG5187 93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDI--QNGFEWMRRLMRDAMSTGLKIDV---FLCKIRLGLI--- 164 (412)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhcccchhh---HHHHHHHHHh---
Confidence 445566666666666556777889999999999999999 99999999999888877764443 3333333333
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHH
Q 004081 696 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 696 ~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A 745 (775)
-|+..-..+.++.+-.++++-|+-.+..+--..+|..........+|
T Consensus 165 ---y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeA 211 (412)
T COG5187 165 ---YGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEA 211 (412)
T ss_pred ---hccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHH
Confidence 34555566677777777777777666655555555555444444443
No 385
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=23.17 E-value=1e+03 Score=26.07 Aligned_cols=77 Identities=23% Similarity=0.151 Sum_probs=61.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 642 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 642 (775)
..+..+...|..++|+..++..+.. ....+.++...+.+|.+....|.+.-|..++.+-.....++++..++-.-..
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~---~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~L~~ 294 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQ---AREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPALAL 294 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChHHHH
Confidence 4467778888999999988775542 2456777888999999999999999999999999998888887776665444
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=22.96 E-value=4.2e+02 Score=25.73 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004081 678 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 753 (775)
Q Consensus 678 l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ 753 (775)
......+.+|-+++...+ ..+..+.+..|+.-+. -+.|....+.+|+||.-|-.+|.++.+.++...+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~---~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRD---TEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred chHHHHHHHHHHHHcccc---hHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 445567788888877222 3344566666665543 57888999999999999999999999988665443
No 387
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=22.61 E-value=4e+02 Score=29.17 Aligned_cols=71 Identities=15% Similarity=-0.007 Sum_probs=56.1
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 601 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aL 601 (775)
....|...+|...+++...- ...+..++...+.+++++...|.++-|..+++.+....+..+...|+-...
T Consensus 223 l~~~~gl~~Al~~L~~~~~~-----~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~L~ 293 (301)
T TIGR03362 223 LAAEGGLEAALQRLQQRLAQ-----AREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPALA 293 (301)
T ss_pred HHHcCCHHHHHHHHHhhccc-----CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChHHH
Confidence 35567788888777764442 125666999999999999999999999999999999988888777765543
No 388
>COG3903 Predicted ATPase [General function prediction only]
Probab=21.48 E-value=1.1e+03 Score=27.05 Aligned_cols=97 Identities=8% Similarity=-0.145 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.....+..+......|+.......++.-+......|.....-+-+.+.+......|....|+...-++.--..+++-.|.
T Consensus 231 ~ws~~lLtgwe~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 231 DWSYALLTGWERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred hhhhHhhhhHHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 34556666777777888888888887766666666777666667778888899999999999998888888877777777
Q ss_pred HHHHHHHHHHHHHHcCC
Q 004081 637 KASATLTLAELWLSFGP 653 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~ 653 (775)
.++....-+......+.
T Consensus 311 laeL~r~~e~~~v~ar~ 327 (414)
T COG3903 311 LAELHRSGEADAVLARH 327 (414)
T ss_pred HHHHHhhhHHHHHhhhc
Confidence 66655533333343333
No 389
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=20.96 E-value=1.4e+02 Score=19.60 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAE 503 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~ 503 (775)
+..+...+...|++++|..++++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4555666777777777777776654
No 390
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=20.89 E-value=7.8e+02 Score=25.90 Aligned_cols=40 Identities=5% Similarity=-0.023 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH---------hcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 597 NASVLLLLAEIHK---------KSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 597 ~a~aLl~lA~i~~---------~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
+++.+...|..++ ..+++..|+.++.+|+.+-.+.|-...
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~ 216 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKD 216 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHH
Confidence 3555666666663 345778899999999999877775443
No 391
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=20.36 E-value=2e+02 Score=26.12 Aligned_cols=34 Identities=12% Similarity=-0.064 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 507 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~ 507 (775)
+.++..+--|.-.++.|+|++|...|+++.+.+.
T Consensus 15 G~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~ 48 (99)
T TIGR00823 15 GDARSKALEALKAAKAGDFAKARALVEQAGMCLN 48 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4567777778888999999999999999998774
Done!