Query 004081
Match_columns 775
No_of_seqs 256 out of 364
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf4_A G-protein-signaling mod 99.9 1E-18 3.5E-23 189.3 41.0 261 474-744 85-365 (406)
2 3ro2_A PINS homolog, G-protein 99.9 2.6E-18 9E-23 179.5 40.0 304 438-753 7-330 (338)
3 4a1s_A PINS, partner of inscut 99.9 4.6E-18 1.6E-22 186.0 41.0 306 437-754 49-371 (411)
4 3sf4_A G-protein-signaling mod 99.9 6.5E-18 2.2E-22 183.0 41.4 306 438-755 11-336 (406)
5 4a1s_A PINS, partner of inscut 99.8 1.5E-17 5.2E-22 181.8 36.1 269 473-754 45-331 (411)
6 3ro2_A PINS homolog, G-protein 99.8 2.5E-17 8.6E-22 172.0 34.9 267 475-754 4-291 (338)
7 3ulq_A Response regulator aspa 99.8 1.8E-16 6.2E-21 173.2 38.0 269 478-761 105-374 (383)
8 1hz4_A MALT regulatory protein 99.8 3.5E-15 1.2E-19 161.7 38.1 304 434-749 12-316 (373)
9 3q15_A PSP28, response regulat 99.7 1.9E-15 6.5E-20 165.2 34.0 266 478-759 103-369 (378)
10 3gw4_A Uncharacterized protein 99.7 6.1E-16 2.1E-20 151.8 24.1 198 526-739 2-200 (203)
11 3ulq_A Response regulator aspa 99.7 1.1E-14 3.8E-19 159.0 36.6 219 524-753 111-330 (383)
12 2ifu_A Gamma-SNAP; membrane fu 99.7 4.2E-15 1.5E-19 158.5 27.8 245 489-747 4-253 (307)
13 3q15_A PSP28, response regulat 99.7 2.4E-14 8.1E-19 156.5 30.0 258 486-755 22-290 (378)
14 3nf1_A KLC 1, kinesin light ch 99.7 3.1E-14 1E-18 148.1 27.2 234 472-716 23-308 (311)
15 2ifu_A Gamma-SNAP; membrane fu 99.6 5E-14 1.7E-18 150.2 26.9 213 527-748 2-217 (307)
16 1hz4_A MALT regulatory protein 99.6 8.2E-14 2.8E-18 150.9 29.0 261 475-749 13-276 (373)
17 1w3b_A UDP-N-acetylglucosamine 99.6 8.8E-13 3E-17 143.4 37.1 220 476-741 169-388 (388)
18 1qqe_A Vesicular transport pro 99.6 2.9E-14 9.8E-19 150.9 23.0 216 525-752 46-263 (292)
19 3nf1_A KLC 1, kinesin light ch 99.6 2.7E-13 9.3E-18 140.9 27.8 219 524-750 35-302 (311)
20 3gw4_A Uncharacterized protein 99.6 3.8E-13 1.3E-17 131.7 24.8 194 487-691 3-198 (203)
21 3edt_B KLC 2, kinesin light ch 99.6 2.4E-13 8.4E-18 138.7 23.7 215 526-748 11-274 (283)
22 3fp2_A TPR repeat-containing p 99.6 1.6E-11 5.6E-16 138.4 39.8 246 435-721 242-497 (537)
23 1w3b_A UDP-N-acetylglucosamine 99.5 1.3E-11 4.5E-16 134.1 35.4 226 476-747 135-360 (388)
24 3ro3_A PINS homolog, G-protein 99.5 5.2E-13 1.8E-17 124.1 20.7 161 553-721 4-164 (164)
25 2y4t_A DNAJ homolog subfamily 99.5 5.3E-11 1.8E-15 131.2 39.6 246 476-747 177-446 (450)
26 3edt_B KLC 2, kinesin light ch 99.5 6.5E-13 2.2E-17 135.6 22.4 217 488-715 13-281 (283)
27 2xpi_A Anaphase-promoting comp 99.5 1.1E-10 3.6E-15 133.9 42.6 233 477-749 340-573 (597)
28 3fp2_A TPR repeat-containing p 99.5 1.6E-11 5.4E-16 138.5 33.4 233 475-748 242-484 (537)
29 2xpi_A Anaphase-promoting comp 99.5 5.6E-11 1.9E-15 136.2 38.2 236 474-749 303-539 (597)
30 1qqe_A Vesicular transport pro 99.5 1.8E-12 6.1E-17 137.1 23.2 213 494-748 3-221 (292)
31 2gw1_A Mitochondrial precursor 99.5 1.5E-10 5.2E-15 129.2 40.2 242 437-719 238-482 (514)
32 2gw1_A Mitochondrial precursor 99.5 1.4E-10 4.7E-15 129.5 39.0 239 473-749 234-472 (514)
33 4eqf_A PEX5-related protein; a 99.5 4.9E-12 1.7E-16 136.1 24.5 274 438-749 67-350 (365)
34 1fch_A Peroxisomal targeting s 99.5 6.7E-12 2.3E-16 134.4 24.4 271 437-748 65-352 (368)
35 3ieg_A DNAJ homolog subfamily 99.4 1.2E-10 4.3E-15 122.8 33.1 208 479-716 123-336 (359)
36 3uq3_A Heat shock protein STI1 99.4 2.3E-11 7.8E-16 122.7 26.0 234 474-735 3-256 (258)
37 3ro3_A PINS homolog, G-protein 99.4 1.3E-11 4.3E-16 114.6 21.9 158 591-756 2-159 (164)
38 3u4t_A TPR repeat-containing p 99.4 9.1E-12 3.1E-16 127.6 22.3 234 478-749 5-244 (272)
39 3hym_B Cell division cycle pro 99.4 1.6E-11 5.6E-16 128.5 24.3 233 477-749 23-259 (330)
40 2qfc_A PLCR protein; TPR, HTH, 99.4 6.8E-12 2.3E-16 132.2 21.1 201 525-735 84-286 (293)
41 3ieg_A DNAJ homolog subfamily 99.4 1E-10 3.6E-15 123.4 29.0 275 438-748 39-328 (359)
42 3hym_B Cell division cycle pro 99.4 6.5E-11 2.2E-15 123.9 26.8 231 477-747 57-291 (330)
43 3u3w_A Transcriptional activat 99.4 8.5E-12 2.9E-16 131.5 19.6 192 524-727 83-278 (293)
44 4b4t_Q 26S proteasome regulato 99.4 3.8E-11 1.3E-15 132.1 25.5 234 479-722 7-252 (434)
45 2qfc_A PLCR protein; TPR, HTH, 99.4 1.8E-10 6.2E-15 121.3 27.9 207 476-686 75-283 (293)
46 3cv0_A Peroxisome targeting si 99.4 1.5E-10 5E-15 121.1 26.9 265 437-747 22-307 (327)
47 3u3w_A Transcriptional activat 99.4 1.2E-10 4.1E-15 122.6 25.8 200 473-678 72-275 (293)
48 2y4t_A DNAJ homolog subfamily 99.3 2.9E-10 9.8E-15 125.3 28.2 274 439-748 63-351 (450)
49 2pl2_A Hypothetical conserved 99.3 2.8E-11 9.6E-16 122.1 17.4 196 477-713 6-212 (217)
50 4b4t_Q 26S proteasome regulato 99.3 1.3E-10 4.6E-15 127.7 24.3 216 524-747 12-237 (434)
51 2ho1_A Type 4 fimbrial biogene 99.3 9.1E-11 3.1E-15 118.9 19.3 212 467-716 28-239 (252)
52 3uq3_A Heat shock protein STI1 99.3 8.1E-10 2.8E-14 111.2 25.7 206 524-758 13-239 (258)
53 1fch_A Peroxisomal targeting s 99.3 6.6E-10 2.3E-14 118.7 26.1 216 476-719 132-363 (368)
54 1ouv_A Conserved hypothetical 99.3 2.1E-09 7E-14 111.1 27.2 220 476-749 6-245 (273)
55 4eqf_A PEX5-related protein; a 99.2 6E-10 2.1E-14 119.7 22.0 216 476-717 133-358 (365)
56 4g1t_A Interferon-induced prot 99.2 7.5E-10 2.6E-14 123.1 23.1 232 486-749 185-453 (472)
57 2q7f_A YRRB protein; TPR, prot 99.2 3.5E-10 1.2E-14 113.3 17.3 205 472-716 19-223 (243)
58 3u4t_A TPR repeat-containing p 99.2 3E-09 1E-13 108.7 24.2 208 477-716 38-251 (272)
59 2pl2_A Hypothetical conserved 99.2 1.7E-10 5.9E-15 116.3 14.7 183 524-747 13-206 (217)
60 2vq2_A PILW, putative fimbrial 99.2 3.8E-09 1.3E-13 103.9 23.5 206 474-716 6-212 (225)
61 3cv0_A Peroxisome targeting si 99.1 2.3E-09 8E-14 111.8 21.3 244 441-718 60-318 (327)
62 2ho1_A Type 4 fimbrial biogene 99.1 2.2E-09 7.4E-14 108.7 18.1 190 524-751 45-234 (252)
63 3vtx_A MAMA; tetratricopeptide 99.1 4.5E-09 1.5E-13 101.6 19.1 167 475-669 4-170 (184)
64 2xm6_A Protein corresponding t 99.1 1E-06 3.5E-11 99.4 40.7 220 477-748 184-425 (490)
65 2h6f_A Protein farnesyltransfe 99.1 7.2E-09 2.5E-13 114.6 22.1 237 472-755 93-344 (382)
66 4gyw_A UDP-N-acetylglucosamine 99.1 3.7E-09 1.3E-13 126.2 20.7 170 474-671 7-176 (723)
67 2vq2_A PILW, putative fimbrial 99.1 1.2E-08 4E-13 100.3 20.9 190 524-750 16-206 (225)
68 1ouv_A Conserved hypothetical 99.0 6.1E-08 2.1E-12 99.9 25.2 194 476-715 38-251 (273)
69 3mkr_A Coatomer subunit epsilo 99.0 4.1E-08 1.4E-12 104.0 24.4 223 471-745 29-253 (291)
70 2q7f_A YRRB protein; TPR, prot 99.0 4.8E-09 1.6E-13 104.9 15.9 187 524-750 31-217 (243)
71 1xnf_A Lipoprotein NLPI; TPR, 99.0 1.9E-08 6.5E-13 102.5 20.2 205 473-715 40-244 (275)
72 4g1t_A Interferon-induced prot 99.0 3E-08 1E-12 110.1 23.4 214 472-714 47-275 (472)
73 4abn_A Tetratricopeptide repea 99.0 3E-09 1E-13 120.6 15.0 228 489-760 81-331 (474)
74 3vtx_A MAMA; tetratricopeptide 99.0 1.6E-08 5.3E-13 97.8 17.2 158 524-715 13-170 (184)
75 3qky_A Outer membrane assembly 98.9 4.4E-08 1.5E-12 100.6 20.8 198 476-692 15-244 (261)
76 3qky_A Outer membrane assembly 98.9 1.3E-08 4.6E-13 104.4 16.8 201 525-744 24-250 (261)
77 4abn_A Tetratricopeptide repea 98.9 3.6E-09 1.2E-13 119.9 13.7 187 474-692 100-304 (474)
78 3as5_A MAMA; tetratricopeptide 98.9 2.6E-08 8.9E-13 94.4 16.6 172 472-671 4-175 (186)
79 4gyw_A UDP-N-acetylglucosamine 98.9 1.9E-08 6.4E-13 120.2 18.3 161 524-718 17-177 (723)
80 1xnf_A Lipoprotein NLPI; TPR, 98.9 6.4E-08 2.2E-12 98.5 19.7 222 488-750 17-239 (275)
81 4i17_A Hypothetical protein; T 98.9 8E-08 2.7E-12 96.2 19.0 161 477-654 8-169 (228)
82 3as5_A MAMA; tetratricopeptide 98.9 6.7E-08 2.3E-12 91.5 17.2 167 553-751 3-169 (186)
83 4i17_A Hypothetical protein; T 98.9 3.1E-08 1.1E-12 99.2 15.2 150 524-692 15-165 (228)
84 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.1E-07 7.2E-12 93.8 20.1 179 476-667 4-211 (225)
85 3mkr_A Coatomer subunit epsilo 98.8 9.6E-08 3.3E-12 101.1 17.5 213 486-747 9-221 (291)
86 2h6f_A Protein farnesyltransfe 98.8 3.9E-07 1.3E-11 100.7 21.3 218 436-692 97-321 (382)
87 2xm6_A Protein corresponding t 98.8 2.3E-06 7.8E-11 96.5 28.0 220 474-748 145-389 (490)
88 3qou_A Protein YBBN; thioredox 98.7 1.9E-07 6.6E-12 98.3 16.2 170 476-671 117-286 (287)
89 2pzi_A Probable serine/threoni 98.7 3.1E-07 1E-11 108.9 19.6 192 487-719 402-602 (681)
90 2yhc_A BAMD, UPF0169 lipoprote 98.7 8.9E-07 3.1E-11 89.2 19.8 173 558-747 4-205 (225)
91 3urz_A Uncharacterized protein 98.7 1.1E-07 3.7E-12 95.0 11.6 160 525-717 13-188 (208)
92 3e4b_A ALGK; tetratricopeptide 98.6 8.3E-06 2.8E-10 91.6 27.8 227 478-755 178-421 (452)
93 2pzi_A Probable serine/threoni 98.6 1.2E-07 4E-12 112.5 12.7 186 525-744 400-586 (681)
94 2ond_A Cleavage stimulation fa 98.6 4.4E-06 1.5E-10 88.2 22.1 228 493-761 33-273 (308)
95 2ond_A Cleavage stimulation fa 98.6 2.4E-06 8.3E-11 90.3 19.8 192 492-718 80-273 (308)
96 3n71_A Histone lysine methyltr 98.6 2.6E-06 8.9E-11 97.1 21.1 146 524-671 317-466 (490)
97 2vsy_A XCC0866; transferase, g 98.5 1.3E-06 4.3E-11 100.7 17.9 181 529-754 2-185 (568)
98 3urz_A Uncharacterized protein 98.5 2.2E-06 7.4E-11 85.4 16.0 168 477-670 5-187 (208)
99 3qou_A Protein YBBN; thioredox 98.5 6.7E-07 2.3E-11 94.1 12.7 160 524-715 125-284 (287)
100 2r5s_A Uncharacterized protein 98.5 9.2E-07 3.1E-11 85.4 12.4 166 478-670 8-174 (176)
101 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.4E-06 8.3E-11 83.9 15.6 139 474-629 4-152 (213)
102 4f3v_A ESX-1 secretion system 98.5 5.7E-07 1.9E-11 95.1 11.3 219 474-715 5-237 (282)
103 3n71_A Histone lysine methyltr 98.4 5.1E-06 1.7E-10 94.7 19.1 149 480-628 313-465 (490)
104 4ga2_A E3 SUMO-protein ligase 98.4 7.9E-07 2.7E-11 84.1 10.5 147 481-653 2-149 (150)
105 2fo7_A Synthetic consensus TPR 98.4 6.8E-06 2.3E-10 72.8 15.9 131 477-627 2-132 (136)
106 2fo7_A Synthetic consensus TPR 98.4 5.2E-06 1.8E-10 73.6 14.7 131 559-715 2-132 (136)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.2E-06 4.3E-11 86.0 11.2 138 557-717 5-152 (213)
108 1a17_A Serine/threonine protei 98.4 1.1E-05 3.7E-10 75.3 17.2 142 474-633 11-152 (166)
109 4gcn_A Protein STI-1; structur 98.4 5.8E-06 2E-10 75.8 14.5 105 557-669 7-112 (127)
110 3rjv_A Putative SEL1 repeat pr 98.4 9.9E-06 3.4E-10 81.0 17.2 159 525-715 27-197 (212)
111 2r5s_A Uncharacterized protein 98.4 1.4E-06 4.8E-11 84.1 10.5 159 524-715 14-173 (176)
112 2vsy_A XCC0866; transferase, g 98.4 2.7E-06 9.3E-11 97.9 14.6 156 489-672 2-160 (568)
113 4ga2_A E3 SUMO-protein ligase 98.4 7.3E-07 2.5E-11 84.4 8.0 146 564-741 3-149 (150)
114 1a17_A Serine/threonine protei 98.4 6.1E-06 2.1E-10 77.0 14.4 142 556-721 11-152 (166)
115 3rjv_A Putative SEL1 repeat pr 98.3 1.1E-05 3.7E-10 80.8 16.9 173 534-748 4-190 (212)
116 4gcn_A Protein STI-1; structur 98.3 5.8E-06 2E-10 75.9 12.3 106 597-716 7-113 (127)
117 4f3v_A ESX-1 secretion system 98.3 4.4E-06 1.5E-10 88.3 12.6 197 527-757 17-236 (282)
118 4gco_A Protein STI-1; structur 98.2 8.8E-06 3E-10 74.7 12.4 118 552-690 8-125 (126)
119 3gyz_A Chaperone protein IPGC; 98.2 2.3E-05 7.8E-10 74.8 15.5 116 553-686 32-147 (151)
120 2ooe_A Cleavage stimulation fa 98.2 3.1E-05 1.1E-09 88.0 19.4 207 476-717 272-494 (530)
121 3upv_A Heat shock protein STI1 98.2 2E-05 6.9E-10 71.0 14.2 113 524-650 12-124 (126)
122 3e4b_A ALGK; tetratricopeptide 98.2 5.3E-05 1.8E-09 85.0 20.1 221 477-747 142-379 (452)
123 3upv_A Heat shock protein STI1 98.2 5E-05 1.7E-09 68.3 16.1 121 475-609 3-123 (126)
124 2ooe_A Cleavage stimulation fa 98.2 0.00012 4.2E-09 83.1 22.7 225 493-755 255-492 (530)
125 2vgx_A Chaperone SYCD; alterna 98.2 1.2E-05 4.2E-10 75.8 12.0 114 537-672 8-121 (148)
126 3rkv_A Putative peptidylprolyl 98.1 1.8E-05 6E-10 74.9 12.5 108 555-670 8-127 (162)
127 2hr2_A Hypothetical protein; a 98.1 4.2E-05 1.4E-09 73.9 14.2 115 557-673 10-135 (159)
128 1elr_A TPR2A-domain of HOP; HO 98.1 6.2E-05 2.1E-09 66.6 14.3 105 557-669 3-108 (131)
129 1p5q_A FKBP52, FK506-binding p 98.1 6.9E-05 2.4E-09 80.6 16.9 136 474-626 145-293 (336)
130 3sz7_A HSC70 cochaperone (SGT) 98.1 6.4E-05 2.2E-09 71.1 14.8 108 554-675 7-114 (164)
131 1p5q_A FKBP52, FK506-binding p 98.1 3.3E-05 1.1E-09 83.1 14.3 140 557-716 146-295 (336)
132 4gco_A Protein STI-1; structur 98.1 3E-05 1E-09 71.1 11.9 91 524-628 21-111 (126)
133 2hr2_A Hypothetical protein; a 98.0 4.8E-05 1.6E-09 73.5 13.5 107 524-630 19-134 (159)
134 3qwp_A SET and MYND domain-con 98.0 0.00011 3.6E-09 82.4 17.7 128 524-651 295-426 (429)
135 1elr_A TPR2A-domain of HOP; HO 98.0 5.9E-05 2E-09 66.7 12.7 106 597-716 3-109 (131)
136 2vyi_A SGTA protein; chaperone 98.0 0.00013 4.4E-09 64.3 14.8 121 474-614 10-130 (131)
137 2fbn_A 70 kDa peptidylprolyl i 98.0 7E-06 2.4E-10 80.5 6.8 123 556-692 36-168 (198)
138 3gyz_A Chaperone protein IPGC; 98.0 0.00011 3.8E-09 70.0 15.0 102 473-588 33-134 (151)
139 2lni_A Stress-induced-phosphop 98.0 7.8E-05 2.7E-09 66.4 13.0 121 472-612 12-132 (133)
140 2xcb_A PCRH, regulatory protei 98.0 9.4E-05 3.2E-09 68.5 14.0 102 557-672 17-118 (142)
141 3qww_A SET and MYND domain-con 98.0 7.1E-05 2.4E-09 83.9 14.8 106 525-630 307-414 (433)
142 3rkv_A Putative peptidylprolyl 97.9 9.7E-05 3.3E-09 69.7 13.6 109 594-716 7-127 (162)
143 3sz7_A HSC70 cochaperone (SGT) 97.9 9.4E-05 3.2E-09 70.0 13.5 110 592-721 5-114 (164)
144 2lni_A Stress-induced-phosphop 97.9 0.00011 3.6E-09 65.5 12.7 118 555-692 13-130 (133)
145 3txn_A 26S proteasome regulato 97.9 0.0022 7.7E-08 70.7 25.3 210 477-691 20-233 (394)
146 2xev_A YBGF; tetratricopeptide 97.9 0.00017 5.8E-09 64.4 13.7 102 478-587 4-105 (129)
147 1na0_A Designed protein CTPR3; 97.9 0.00026 8.9E-09 61.8 14.4 116 476-611 9-124 (125)
148 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00016 5.4E-09 70.7 14.3 128 474-618 36-176 (198)
149 2e2e_A Formate-dependent nitri 97.9 9.5E-05 3.2E-09 70.5 12.3 127 526-674 20-149 (177)
150 2xcb_A PCRH, regulatory protei 97.9 0.00035 1.2E-08 64.6 15.6 102 474-589 16-117 (142)
151 2vyi_A SGTA protein; chaperone 97.9 8.3E-05 2.8E-09 65.6 10.8 101 555-669 9-109 (131)
152 2vgx_A Chaperone SYCD; alterna 97.8 0.00038 1.3E-08 65.4 15.2 102 474-589 19-120 (148)
153 1xi4_A Clathrin heavy chain; a 97.8 0.00056 1.9E-08 85.3 20.0 207 482-747 1055-1301(1630)
154 1na0_A Designed protein CTPR3; 97.8 0.00017 5.7E-09 63.0 11.6 119 553-691 4-122 (125)
155 1hxi_A PEX5, peroxisome target 97.8 5.1E-05 1.8E-09 68.9 8.4 97 559-669 18-114 (121)
156 3q49_B STIP1 homology and U bo 97.8 0.00014 4.7E-09 65.8 11.1 102 557-672 8-109 (137)
157 2xev_A YBGF; tetratricopeptide 97.8 0.00071 2.4E-08 60.3 15.7 97 524-628 10-106 (129)
158 2e2e_A Formate-dependent nitri 97.8 0.00015 5E-09 69.2 11.5 124 487-630 21-147 (177)
159 1ihg_A Cyclophilin 40; ppiase 97.8 0.00014 5E-09 79.5 12.8 141 557-747 222-362 (370)
160 2c2l_A CHIP, carboxy terminus 97.7 8.2E-05 2.8E-09 77.8 10.3 102 476-591 4-105 (281)
161 3q49_B STIP1 homology and U bo 97.7 0.00044 1.5E-08 62.4 13.9 94 524-631 17-110 (137)
162 2c2l_A CHIP, carboxy terminus 97.7 0.00011 3.9E-09 76.7 11.2 95 524-632 12-106 (281)
163 1elw_A TPR1-domain of HOP; HOP 97.7 0.00059 2E-08 58.9 14.1 97 476-586 4-100 (118)
164 1hxi_A PEX5, peroxisome target 97.7 9.9E-05 3.4E-09 66.9 9.3 91 525-629 26-116 (121)
165 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00033 1.1E-08 78.7 15.5 129 474-619 266-406 (457)
166 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00012 3.9E-09 82.5 11.6 92 636-747 315-406 (457)
167 3qwp_A SET and MYND domain-con 97.7 0.0005 1.7E-08 76.9 16.7 132 479-610 290-425 (429)
168 3txn_A 26S proteasome regulato 97.7 0.0054 1.8E-07 67.6 24.4 206 524-741 27-235 (394)
169 2l6j_A TPR repeat-containing p 97.7 1.3E-05 4.4E-10 69.8 2.3 101 557-665 3-103 (111)
170 1elw_A TPR1-domain of HOP; HOP 97.7 0.00035 1.2E-08 60.4 11.5 100 557-670 3-102 (118)
171 1ihg_A Cyclophilin 40; ppiase 97.7 0.00049 1.7E-08 75.3 15.0 127 475-618 222-361 (370)
172 1wao_1 Serine/threonine protei 97.6 4.1E-05 1.4E-09 86.8 6.0 175 475-669 5-197 (477)
173 2dba_A Smooth muscle cell asso 97.6 0.00054 1.9E-08 62.1 12.6 103 474-587 26-128 (148)
174 3qww_A SET and MYND domain-con 97.6 0.00056 1.9E-08 76.6 14.9 116 609-732 309-430 (433)
175 3mv2_B Coatomer subunit epsilo 97.6 0.0032 1.1E-07 67.2 19.9 169 479-669 103-282 (310)
176 3k9i_A BH0479 protein; putativ 97.6 0.00013 4.4E-09 65.2 7.7 90 528-628 2-91 (117)
177 2dba_A Smooth muscle cell asso 97.6 0.00051 1.8E-08 62.3 12.0 94 524-628 36-129 (148)
178 2kck_A TPR repeat; tetratricop 97.5 0.00012 3.9E-09 63.0 6.4 100 559-670 7-107 (112)
179 2kat_A Uncharacterized protein 97.5 0.0012 4.2E-08 58.1 12.6 92 534-639 3-94 (115)
180 2kck_A TPR repeat; tetratricop 97.5 0.00057 2E-08 58.5 10.1 92 524-627 14-106 (112)
181 3ma5_A Tetratricopeptide repea 97.4 0.0011 3.6E-08 57.7 11.3 79 558-642 7-85 (100)
182 1na3_A Designed protein CTPR2; 97.4 0.00087 3E-08 55.7 10.3 88 553-652 4-91 (91)
183 3k9i_A BH0479 protein; putativ 97.4 0.00026 8.9E-09 63.1 7.1 90 570-670 2-91 (117)
184 1wao_1 Serine/threonine protei 97.4 0.00016 5.4E-09 81.9 6.9 118 525-664 15-134 (477)
185 3mv2_B Coatomer subunit epsilo 97.4 0.0027 9.1E-08 67.8 15.6 180 535-741 85-270 (310)
186 2l6j_A TPR repeat-containing p 97.4 9E-05 3.1E-09 64.3 3.4 88 597-692 3-90 (111)
187 1xi4_A Clathrin heavy chain; a 97.3 0.035 1.2E-06 69.6 26.8 188 524-746 1113-1375(1630)
188 2if4_A ATFKBP42; FKBP-like, al 97.3 0.0003 1E-08 75.7 7.6 97 559-669 231-328 (338)
189 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00036 1.2E-08 75.1 7.2 139 557-714 178-327 (338)
190 3ma5_A Tetratricopeptide repea 97.1 0.0041 1.4E-07 53.9 11.3 85 166-268 3-87 (100)
191 2kat_A Uncharacterized protein 97.0 0.0083 2.9E-07 52.6 12.7 98 157-272 6-103 (115)
192 3dra_A Protein farnesyltransfe 97.0 0.015 5E-07 62.0 16.9 209 476-716 67-288 (306)
193 4b4t_P 26S proteasome regulato 96.9 0.051 1.7E-06 60.9 21.3 127 597-731 136-263 (445)
194 1b89_A Protein (clathrin heavy 96.9 0.0012 4.1E-08 73.8 7.8 244 444-747 33-303 (449)
195 3ffl_A Anaphase-promoting comp 96.9 0.0043 1.5E-07 59.8 10.2 129 554-691 16-166 (167)
196 1klx_A Cysteine rich protein B 96.8 0.0089 3E-07 55.3 11.4 114 571-714 8-125 (138)
197 3dra_A Protein farnesyltransfe 96.7 0.063 2.2E-06 57.0 18.7 226 487-756 43-285 (306)
198 4e6h_A MRNA 3'-END-processing 96.6 0.072 2.5E-06 62.9 20.1 227 496-761 329-573 (679)
199 4e6h_A MRNA 3'-END-processing 96.5 0.12 4E-06 61.1 20.7 214 476-717 343-572 (679)
200 1klx_A Cysteine rich protein B 96.4 0.019 6.4E-07 53.1 10.9 110 530-669 9-126 (138)
201 1na3_A Designed protein CTPR2; 96.4 0.017 6E-07 47.5 9.5 74 525-612 18-91 (91)
202 1zu2_A Mitochondrial import re 96.2 0.0044 1.5E-07 59.6 5.3 88 528-629 14-122 (158)
203 1b89_A Protein (clathrin heavy 96.1 0.0039 1.3E-07 69.7 5.1 203 477-739 33-254 (449)
204 4b4t_P 26S proteasome regulato 95.9 0.68 2.3E-05 51.6 22.5 203 473-684 53-262 (445)
205 2v5f_A Prolyl 4-hydroxylase su 95.7 0.057 2E-06 47.2 10.2 70 559-628 6-76 (104)
206 4g26_A Pentatricopeptide repea 95.7 0.23 7.7E-06 56.4 17.7 171 478-669 28-204 (501)
207 3q7a_A Farnesyltransferase alp 95.7 0.22 7.5E-06 53.9 16.4 176 472-673 50-241 (349)
208 3ffl_A Anaphase-promoting comp 95.6 0.14 4.9E-06 49.2 13.0 107 514-622 20-146 (167)
209 2kc7_A BFR218_protein; tetratr 95.5 0.043 1.5E-06 46.3 8.3 62 562-629 4-66 (99)
210 3ly7_A Transcriptional activat 95.4 0.17 5.8E-06 55.1 14.4 139 558-715 196-339 (372)
211 1zu2_A Mitochondrial import re 95.3 0.01 3.4E-07 57.1 3.8 90 569-670 13-121 (158)
212 3ly7_A Transcriptional activat 94.8 0.38 1.3E-05 52.3 14.8 124 530-669 213-339 (372)
213 2kc7_A BFR218_protein; tetratr 94.7 0.31 1E-05 40.8 11.3 56 524-587 8-64 (99)
214 3mkq_A Coatomer beta'-subunit; 94.0 0.6 2E-05 54.8 15.6 75 480-584 633-707 (814)
215 3q7a_A Farnesyltransferase alp 93.9 0.47 1.6E-05 51.3 13.2 154 476-654 88-258 (349)
216 4b4t_R RPN7, 26S proteasome re 93.8 0.39 1.3E-05 53.3 12.6 141 579-730 111-252 (429)
217 3dss_A Geranylgeranyl transfer 93.6 4.7 0.00016 43.0 20.1 154 492-671 90-269 (331)
218 1dce_A Protein (RAB geranylger 93.4 0.8 2.7E-05 52.7 14.7 153 476-654 63-242 (567)
219 2wpv_A GET4, UPF0363 protein Y 93.2 6.1 0.00021 41.8 20.1 184 564-756 19-218 (312)
220 3dss_A Geranylgeranyl transfer 93.1 2.5 8.5E-05 45.2 17.0 162 486-671 39-224 (331)
221 1dce_A Protein (RAB geranylger 92.9 0.72 2.5E-05 53.1 13.4 160 488-673 40-225 (567)
222 4g26_A Pentatricopeptide repea 92.9 1.3 4.5E-05 50.1 15.3 161 524-714 34-203 (501)
223 1pc2_A Mitochondria fission pr 92.9 0.44 1.5E-05 45.3 9.5 67 557-628 31-101 (152)
224 4b4t_S RPN3, 26S proteasome re 92.7 0.14 4.9E-06 57.9 6.8 181 555-745 133-330 (523)
225 3bee_A Putative YFRE protein; 92.6 0.36 1.2E-05 41.5 7.9 67 558-630 6-75 (93)
226 3mkq_A Coatomer beta'-subunit; 92.3 3.3 0.00011 48.5 18.3 135 567-745 661-802 (814)
227 2v5f_A Prolyl 4-hydroxylase su 91.1 0.74 2.5E-05 39.9 8.4 71 598-670 5-76 (104)
228 3u64_A Protein TP_0956; tetrat 91.1 3.9 0.00013 43.0 15.0 86 575-671 180-271 (301)
229 4b4t_R RPN7, 26S proteasome re 90.6 1.1 3.8E-05 49.6 11.1 99 525-628 140-238 (429)
230 1pc2_A Mitochondria fission pr 86.3 8.2 0.00028 36.4 12.4 49 531-586 50-99 (152)
231 2wpv_A GET4, UPF0363 protein Y 86.2 37 0.0013 35.8 21.2 101 560-663 55-157 (312)
232 3bee_A Putative YFRE protein; 85.7 1.4 4.6E-05 37.8 6.1 68 597-672 5-75 (93)
233 3lpz_A GET4 (YOR164C homolog); 84.4 46 0.0016 35.4 21.2 180 568-757 22-218 (336)
234 2uy1_A Cleavage stimulation fa 82.0 29 0.001 38.7 16.8 162 476-666 213-380 (493)
235 2ff4_A Probable regulatory pro 81.6 43 0.0015 36.1 17.5 110 479-596 118-244 (388)
236 3mkq_B Coatomer subunit alpha; 80.9 27 0.00092 33.7 13.7 118 523-666 12-141 (177)
237 2ff4_A Probable regulatory pro 80.9 17 0.00058 39.3 14.0 105 525-635 124-243 (388)
238 3u64_A Protein TP_0956; tetrat 80.1 7 0.00024 41.0 9.9 87 532-630 179-272 (301)
239 4h7y_A Dual specificity protei 78.7 16 0.00054 34.6 10.8 87 575-670 36-124 (161)
240 1nzn_A CGI-135 protein, fissio 78.0 5.9 0.0002 36.2 7.5 68 557-628 34-104 (126)
241 4b4t_S RPN3, 26S proteasome re 77.9 17 0.00057 41.2 12.7 79 550-629 223-301 (523)
242 4gns_B Protein CSD3, chitin bi 72.5 32 0.0011 40.8 13.9 125 489-623 261-396 (754)
243 1nzn_A CGI-135 protein, fissio 71.7 21 0.00073 32.5 9.6 83 657-752 18-100 (126)
244 3lpz_A GET4 (YOR164C homolog); 71.3 1.1E+02 0.0038 32.5 23.1 102 559-663 56-159 (336)
245 4h7y_A Dual specificity protei 69.4 13 0.00046 35.1 7.7 90 533-629 36-125 (161)
246 1y8m_A FIS1; mitochondria, unk 68.4 20 0.00068 33.5 8.7 66 557-627 38-106 (144)
247 4fhn_B Nucleoporin NUP120; pro 68.4 72 0.0025 39.5 16.6 126 525-665 821-963 (1139)
248 4gns_B Protein CSD3, chitin bi 66.8 15 0.0005 43.7 9.3 59 516-584 339-397 (754)
249 3o48_A Mitochondria fission 1 66.7 20 0.0007 33.0 8.3 66 558-628 40-108 (134)
250 3o48_A Mitochondria fission 1 66.7 25 0.00085 32.4 8.8 47 533-586 60-106 (134)
251 2ijq_A Hypothetical protein; s 66.2 18 0.00063 34.3 8.2 76 525-600 41-117 (161)
252 3mkq_B Coatomer subunit alpha; 64.5 1E+02 0.0035 29.6 13.9 96 553-686 7-102 (177)
253 2uy1_A Cleavage stimulation fa 63.1 1.1E+02 0.0038 33.8 15.5 131 475-629 285-415 (493)
254 1zbp_A Hypothetical protein VP 59.0 37 0.0013 35.0 9.5 120 486-628 7-130 (273)
255 3spa_A Mtrpol, DNA-directed RN 58.8 72 0.0025 39.2 13.3 106 471-586 122-229 (1134)
256 4b4t_O 26S proteasome regulato 55.2 1.4E+02 0.0048 32.2 14.1 101 488-589 88-200 (393)
257 1y8m_A FIS1; mitochondria, unk 53.5 36 0.0012 31.7 7.5 67 678-752 37-103 (144)
258 2cwy_A Hypothetical protein TT 52.1 29 0.001 29.8 6.3 67 525-595 10-76 (94)
259 2cwy_A Hypothetical protein TT 51.0 29 0.00099 29.8 6.1 68 563-632 6-73 (94)
260 2r9g_A AAA ATPase, central reg 50.3 1.2E+02 0.0039 29.9 10.9 98 569-675 25-123 (204)
261 4ady_A RPN2, 26S proteasome re 49.7 4.3E+02 0.015 32.1 20.4 19 231-249 239-257 (963)
262 2ijq_A Hypothetical protein; s 44.8 32 0.0011 32.7 5.9 74 558-631 32-108 (161)
263 2crb_A Nuclear receptor bindin 41.7 57 0.002 28.0 6.2 37 553-589 10-46 (97)
264 3bge_A Predicted ATPase; struc 41.0 2.5E+02 0.0085 27.5 11.6 97 569-674 18-116 (201)
265 4b4t_O 26S proteasome regulato 37.5 1.9E+02 0.0066 31.0 11.6 105 525-629 85-200 (393)
266 3ctd_A Putative ATPase, AAA fa 36.6 94 0.0032 30.7 7.9 97 569-674 46-143 (213)
267 3kae_A CDC27, possible protein 34.5 3.3E+02 0.011 26.3 11.6 89 525-626 42-142 (242)
268 3spa_A Mtrpol, DNA-directed RN 32.9 3.1E+02 0.011 33.8 13.0 91 524-624 135-227 (1134)
269 1zbp_A Hypothetical protein VP 30.9 3.8E+02 0.013 27.5 11.7 95 477-588 32-130 (273)
270 3t5v_B Nuclear mRNA export pro 30.1 1.5E+02 0.0052 32.7 9.3 92 523-614 183-281 (455)
271 4gq2_M Nucleoporin NUP120; bet 29.9 2.7E+02 0.0093 33.7 12.3 115 525-652 819-950 (950)
272 3t5v_B Nuclear mRNA export pro 29.6 2.7E+02 0.0093 30.7 11.2 111 642-760 180-307 (455)
273 4fhn_B Nucleoporin NUP120; pro 27.2 2.5E+02 0.0084 34.7 11.5 129 563-710 817-962 (1139)
274 1qsa_A Protein (soluble lytic 26.8 6.3E+02 0.021 28.9 14.1 36 148-187 51-89 (618)
275 2e2a_A Protein (enzyme IIA); h 22.3 1.2E+02 0.0041 26.6 5.2 34 474-507 18-51 (105)
276 2yin_A DOCK2, dedicator of cyt 22.3 6.5E+02 0.022 27.4 12.5 41 699-739 105-146 (436)
277 1wcr_A PTS system, N, N'-diace 22.2 1.2E+02 0.0041 26.5 5.2 33 474-506 16-48 (103)
278 2wm9_A Dedicator of cytokinesi 22.1 1.8E+02 0.0062 31.8 8.0 41 699-739 101-141 (428)
No 1
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=1e-18 Score=189.33 Aligned_cols=261 Identities=14% Similarity=0.041 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCC--------------------HH
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH--------------------LK 533 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~--------------------~~ 533 (775)
..+.++.++|..+...|+|++|...++.+.+.++..++.......+......+...|+ +.
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 3456678899999999999999999999999998877654222222111247788999 99
Q ss_pred HHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCC
Q 004081 534 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 613 (775)
Q Consensus 534 ~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~ 613 (775)
+|...+.+++.+....+ ++.....++..++.++...|++++|++.+++++..+...++....+.++..+|.++...|+
T Consensus 165 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999999888766 7777888999999999999999999999999999999988888899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcC
Q 004081 614 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 693 (775)
Q Consensus 614 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~ 693 (775)
+++|+..+.+++.+....+++...+.+...+|.++...|+. ++|...+++++......++....+.++..+|.++..
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~- 319 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA- 319 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHH
Q 004081 694 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 744 (775)
Q Consensus 694 ~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~ 744 (775)
.|++.+|+.++++|++.+..+++.....+++..+|.++..+|+...
T Consensus 320 -----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 320 -----LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp -----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -----cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999999999999999999999999999999999999998743
No 2
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=2.6e-18 Score=179.54 Aligned_cols=304 Identities=12% Similarity=0.020 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH
Q 004081 438 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 517 (775)
Q Consensus 438 ~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l 517 (775)
.+...+..+...|...-+.-.-.-.+.. +..+.+....++..+|..+...|+|++|...++++.+..+..++......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4556677777888876665433222221 22234455788999999999999999999999999998877766432121
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCC--------------------hHHH
Q 004081 518 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ--------------------FSEA 577 (775)
Q Consensus 518 ~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd--------------------~~eA 577 (775)
.+......+...|++.+|...+.+++.+.+..+ ++.....+...++.++...|+ +++|
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 111112478899999999999999999988766 777788899999999999999 9999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 004081 578 AAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 657 (775)
Q Consensus 578 l~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~ 657 (775)
++.+++++..+...++....+.++..+|.++...|+++.|+..+.+++.++...+++...+.+...+|.++...|+. +
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 240 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF--E 240 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--H
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--H
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 004081 658 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 737 (775)
Q Consensus 658 ~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~ 737 (775)
+|...+++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|.
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHH
Q 004081 738 KLGRLAEREEAAALFK 753 (775)
Q Consensus 738 ~lGd~~~A~~aAa~f~ 753 (775)
..|++++|.++.....
T Consensus 315 ~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHH
Confidence 9999999987544333
No 3
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=4.6e-18 Score=185.99 Aligned_cols=306 Identities=12% Similarity=0.014 Sum_probs=262.6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHH
Q 004081 437 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 516 (775)
Q Consensus 437 ~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~ 516 (775)
..+...+..+...|.-.-+...-.-.+.. ...+.+..+.++..+|..+...|+|++|...++++.+.+...++.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34456677777788776665433222222 2223445678899999999999999999999999999987776644222
Q ss_pred HHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCC-----------------hHHHHH
Q 004081 517 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ-----------------FSEAAA 579 (775)
Q Consensus 517 l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd-----------------~~eAl~ 579 (775)
..+......+...|++.+|...+.+++.++...+ |......++..++.++...|+ +++|++
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 2111112478899999999999999999987766 667788999999999999999 999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHH
Q 004081 580 VAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMA 659 (775)
Q Consensus 580 ~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~A 659 (775)
.+++++..+...++....+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++..+|+. ++|
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A 282 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF--EDA 282 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH--HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH--HHH
Confidence 999999999988888889999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc
Q 004081 660 SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 739 (775)
Q Consensus 660 l~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~l 739 (775)
+..+++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|...
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTL------LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004081 740 GRLAEREEAAALFKE 754 (775)
Q Consensus 740 Gd~~~A~~aAa~f~q 754 (775)
|+.++|.++.....+
T Consensus 357 g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 357 GGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999764443333
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.85 E-value=6.5e-18 Score=182.98 Aligned_cols=306 Identities=12% Similarity=0.021 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH
Q 004081 438 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 517 (775)
Q Consensus 438 ~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l 517 (775)
.+...+..+-..|...-+...-.-.+.. ...+.+..+.++..+|..+...|+|++|...++++....+..++......
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 4556677788888877665433222221 22234455788999999999999999999999999998887766542222
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCC--------------------hHHH
Q 004081 518 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ--------------------FSEA 577 (775)
Q Consensus 518 ~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd--------------------~~eA 577 (775)
.+......+...|++++|...+.+++.+.+..+ ++.....++..++.++...|+ +++|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 111112478899999999999999999988766 777788899999999999999 9999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 004081 578 AAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 657 (775)
Q Consensus 578 l~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~ 657 (775)
++.+++++..+...++....+.++..+|.++...|+++.|+..+.+++.+....+++...+.+...+|.++..+|+. +
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~ 244 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF--E 244 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--H
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 004081 658 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 737 (775)
Q Consensus 658 ~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~ 737 (775)
+|+..+++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 004081 738 KLGRLAEREEAAALFKEY 755 (775)
Q Consensus 738 ~lGd~~~A~~aAa~f~ql 755 (775)
..|++++|.++.....++
T Consensus 319 ~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999997754443333
No 5
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=1.5e-17 Score=181.84 Aligned_cols=269 Identities=14% Similarity=0.089 Sum_probs=242.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
...+..+..+|..+...|+|++|...++++.+..+.......... .++ ..+...|++++|...+.+++.++...+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~~~~~~- 120 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLG---NAYFYLGDYNKAMQYHKHDLTLAKSMN- 120 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH---HHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHcc-
Confidence 466788889999999999999999999999988654222111122 222 467889999999999999999987766
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCC-----------------h
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN-----------------A 614 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~-----------------~ 614 (775)
|......++..++.++...|++++|++.+++++..+...++....+.++..+|.++...|+ +
T Consensus 121 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence 6777889999999999999999999999999999999999889999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 004081 615 VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDP 694 (775)
Q Consensus 615 ~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~ 694 (775)
++|+..+.+++.+....+++...+.++..+|.++...|+. ++|+..+++++......++....+.++..+|.++..
T Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-- 275 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF--QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-- 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004081 695 SFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 754 (775)
Q Consensus 695 ~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~q 754 (775)
.|++++|+.++++|++.+...+++.....++..+|.+|...|+.++|.++.....+
T Consensus 276 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 276 ----LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999775444333
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=2.5e-17 Score=172.04 Aligned_cols=267 Identities=15% Similarity=0.073 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
.+..+...|..+...|+|++|...++++.+..|.......... .++ ..+...|++.+|...+.+++.+....+ |
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 78 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLG---NAYFYLHDYAKALEYHHHDLTLARTIG--D 78 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence 3556777899999999999999999999987543211111111 222 478899999999999999999887766 7
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCC--------------------
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN-------------------- 613 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~-------------------- 613 (775)
+.....++..++.++...|++++|++.+++++......++....+.++..+|.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 777889999999999999999999999999999999998888899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcC
Q 004081 614 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 693 (775)
Q Consensus 614 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~ 693 (775)
+++|+..+.+++.++...++....+.+...+|.++...|+. ++|...+++++......++....+.++..+|.++..
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~- 235 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF--RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF- 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004081 694 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 754 (775)
Q Consensus 694 ~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~q 754 (775)
.|++++|+.++++|++.+...+++.....++..+|.++...|+.++|.++.....+
T Consensus 236 -----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 236 -----LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp -----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999775444333
No 7
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=1.8e-16 Score=173.23 Aligned_cols=269 Identities=10% Similarity=-0.005 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC-hhh
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-MDL 556 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D-~~~ 556 (775)
.+..+|..+...|+|++|...++++.+.+...++..............+...|++.+|...+.+++.+++..+ + ...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 182 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--AYNIR 182 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS--TTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--cchHH
Confidence 3455788889999999999999999999887776542111111112478889999999999999999988765 4 566
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.+.++..+|.++...|++++|++.+++++..+...++....+.++..+|.++...|++++|+.++.+|+.++...++...
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999998566
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
.+.++..||.++..+|+. ++|...+++++......++....+. +..+|.++.. .|+. ..+++|+..+
T Consensus 263 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~------~~~~----~~~~~al~~~ 329 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKI--DKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLS------GPDE----EAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTS------SCCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhC------CCcH----HHHHHHHHHH
Confidence 699999999999999998 9999999999999999999988887 6779999998 7776 6889999999
Q ss_pred HhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhcc
Q 004081 717 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 761 (775)
Q Consensus 717 ~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~~ 761 (775)
++.+......+++..+|.+|...|+.+.|.++.....++...+.+
T Consensus 330 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 330 ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998876666555555443
No 8
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=3.5e-15 Score=161.73 Aligned_cols=304 Identities=13% Similarity=0.026 Sum_probs=235.4
Q ss_pred hhhHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH
Q 004081 434 LVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR 513 (775)
Q Consensus 434 l~g~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~ 513 (775)
+.+......+.+.-..|...-+.....-.+... ...+....+.++..+|..+..+|+|++|...++++.+..+..++..
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 344556666666667777665554432222222 2222234667889999999999999999999999999998877654
Q ss_pred HHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc
Q 004081 514 ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL 593 (775)
Q Consensus 514 ~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd 593 (775)
.....+......++..|++++|..++++++.+.+..+..+......+...++.++...|++++|.+.+++++..+...++
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 22221111124788999999999999999999877663322456778889999999999999999999999998887766
Q ss_pred chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 594 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD-LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 594 ~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~-~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
.. .+.++..+|.++...|++++|+..+.+++.+....+.+ ...+.....++.++...|+. ++|...+++++....
T Consensus 171 ~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~a~~~~~- 246 (373)
T 1hz4_A 171 QQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK--AAAANWLRHTAKPEF- 246 (373)
T ss_dssp GG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHSCCCCC-
T ss_pred HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH--HHHHHHHHhCCCCCC-
Confidence 54 66889999999999999999999999999998776664 23333334466778899998 999999999986432
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 673 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 673 ~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
++......++..+|++++. .|++++|+..++++++.....+.+....+++..+|.++...|+.++|.++.
T Consensus 247 -~~~~~~~~~~~~la~~~~~------~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 247 -ANNHFLQGQWRNIARAQIL------LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp -TTCGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2212223356788999999 999999999999999999999999889999999999999999999987633
No 9
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=1.9e-15 Score=165.20 Aligned_cols=266 Identities=12% Similarity=-0.012 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC-hhh
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-MDL 556 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D-~~~ 556 (775)
.+..+|..+..+|+|++|+..++++...++..++..........+...+...|++..|...+.+++.+++..+ + ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP--LYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST--TCHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC--Cchhh
Confidence 4567788889999999999999999999887776432211111112478899999999999999999988655 3 445
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.+.+...+|.++...|+|++|++.+++++..++..++....+.++..+|.++...|++++|+.++.+|+.++...+++..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
+.++..||.++..+|+. ++|...+++++......++...... +..++..+.. .++. ..+.+|+..+
T Consensus 261 -~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~ly~~------~~~~----~~~~~al~~~ 326 (378)
T 3q15_A 261 -PKVLFGLSWTLCKAGQT--QKAFQFIEEGLDHITARSHKFYKEL-FLFLQAVYKE------TVDE----RKIHDLLSYF 326 (378)
T ss_dssp -HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCCTTCCSCHHHH-HHHHHHHHSS------SCCH----HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhC------CCcH----HHHHHHHHHH
Confidence 99999999999999998 9999999999999988888776664 5777777777 5554 6788888889
Q ss_pred HhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Q 004081 717 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAL 759 (775)
Q Consensus 717 ~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~ 759 (775)
++.+......+++..+|.+|...|+.+.|.++-....++...+
T Consensus 327 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988655554444433
No 10
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.73 E-value=6.1e-16 Score=151.79 Aligned_cols=198 Identities=16% Similarity=0.072 Sum_probs=177.9
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
++..|++.+|.+.+..+.. |+.....++..++.++...|++++|++.+++++..+++.++....+.++..+|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4578999999985554432 55557889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHH
Q 004081 606 EIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 684 (775)
Q Consensus 606 ~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~ 684 (775)
.++...|++++|+..+.+++.+++..+ .+...+.++..+|.++..+|+. ++|+..+++++......++....+.++.
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL--AGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999999999999 4558999999999999999998 9999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc
Q 004081 685 AEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 739 (775)
Q Consensus 685 ~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~l 739 (775)
.+|.++.. .|++++|+.++++|++.++..+++..+++++..++.+....
T Consensus 152 ~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
T 3gw4_A 152 GLGDLAQQ------EKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHH 200 (203)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHH------CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhcc
Confidence 99999999 99999999999999999999999999999999988765443
No 11
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=1.1e-14 Score=159.03 Aligned_cols=219 Identities=11% Similarity=-0.033 Sum_probs=199.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc-chhHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLL 602 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd-~~~~a~aLl 602 (775)
..+...|++++|...+.+++.++...+ |+...+.+...+|.++...|++++|++.+++++..+...++ ....+.++.
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 467789999999999999999988766 77778999999999999999999999999999999998887 777899999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHH
Q 004081 603 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 682 (775)
Q Consensus 603 ~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a 682 (775)
.+|.++...|++++|+.++.+|+.++...+++...+.++..||.++..+|+. ++|+..+++++......++....+.+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY--EDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999998 99999999999999998885666999
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004081 683 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 753 (775)
Q Consensus 683 ~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ 753 (775)
+..+|.++.. .|++++|+.++++|++.....+++..... +..++.+|...|+.....++...++
T Consensus 267 ~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 267 YFLITQIHYK------LGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999988887 7779999999999544344433333
No 12
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=4.2e-15 Score=158.50 Aligned_cols=245 Identities=9% Similarity=-0.050 Sum_probs=209.0
Q ss_pred hcCHHHHHHHHHHHHHHhhh-----cCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLS-----VSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 563 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~-----~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~ 563 (775)
.|+|++|..+++++.+..+. .++.....-.+.-....+...|+|.+|...+.+++.+....+ ++...+.++..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 58899999999999886552 122121111111111467789999999999999999988777 77788899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 004081 564 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 643 (775)
Q Consensus 564 ~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 643 (775)
.+.++...|++++|++.+++++.+..+.|+....+.++..+|.++.. |++++|+.++.+|+.+....+.....+.++..
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999999999999999999999988899999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHH
Q 004081 644 LAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE 723 (775)
Q Consensus 644 La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~ 723 (775)
+|.++..+|+. ++|+..+++++......+.....+.++..+|.+++. .|++.+|+.++++|+ ....... .
T Consensus 161 lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~A~~~~~~al-~~p~~~~-~ 230 (307)
T 2ifu_A 161 ASRLLVRQQKF--DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH------RADYVAAQKCVRESY-SIPGFSG-S 230 (307)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHT-TSTTSTT-S
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHh-CCCCCCC-C
Confidence 99999999998 999999999999999999988889999999999999 999999999999999 6544433 3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 724 LAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 724 ~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.+...+..++.++ ..|+.+...+
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 4566777788777 5788877766
No 13
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=2.4e-14 Score=156.45 Aligned_cols=258 Identities=12% Similarity=0.046 Sum_probs=214.8
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHh-hHHHHHHhcCCHHHHH---------HHHHHHhhhhhcCCCCChh
Q 004081 486 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ-LLHERSLHRGHLKLAQ---------KVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 486 la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~-l~~~~al~~G~~~~A~---------~~l~~ll~L~~~~~~~D~~ 555 (775)
...++++++|..+++++...+......+...+-.+ +.|+..+..+.+..+. ..++.+...... .|..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~---~~~~ 98 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK---LTGL 98 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH---HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC---CccH
Confidence 36799999999999999998887754442222222 1123334444544444 666665543221 1344
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC-c
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL-D 634 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~-~ 634 (775)
......+.+|..+...|++++|++.+++++..+...++....+.++..+|.++...|++..|+.++.+|+.+....+. .
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 455677889999999999999999999999999888888999999999999999999999999999999999988876 6
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
...+.+...||.++..+|+. ++|+..+++++......++....+.++..+|.++.. .|++++|+.++++|++
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~------~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHY--DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR------SGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 78899999999999999998 999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004081 715 ELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 755 (775)
Q Consensus 715 ~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql 755 (775)
.++..+++.. ..++..+|.+|...|+.++|.++.....++
T Consensus 251 ~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 251 VSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999988 999999999999999999998855444333
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.1e-14 Score=148.13 Aligned_cols=234 Identities=17% Similarity=0.040 Sum_probs=196.9
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcC--c-hH-HHHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhh
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS--K-SR-ILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMA 546 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~--~-~~-~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~ 546 (775)
......++..+|..+...|+|++|...++++.+.+.... + .. .... .++ ..+...|++++|...+.+++.++
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA---LVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999999876553 2 21 1111 222 47889999999999999999987
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc--ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004081 547 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 624 (775)
Q Consensus 547 ~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~--gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~A 624 (775)
....+.+......+...++.++...|++++|++.+++++..+.+. ++......++..+|.++...|++++|+..+.++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 655223555678899999999999999999999999999988776 666778899999999999999999999999999
Q ss_pred HHHHHHh--CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcC----------------------------
Q 004081 625 LSFCQLL--NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG---------------------------- 674 (775)
Q Consensus 625 L~la~~~--g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G---------------------------- 674 (775)
+.++... ++....+.+...+|.++..+|+. ++|...+++++......+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF--KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 9998877 55778888999999999999998 999999999998754421
Q ss_pred ---------------CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 675 ---------------GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 675 ---------------~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
.....+.++..+|.++.. .|++++|+.++++|++..
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR------QGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHh
Confidence 335677889999999999 999999999999998875
No 15
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.63 E-value=5e-14 Score=150.20 Aligned_cols=213 Identities=12% Similarity=-0.002 Sum_probs=192.4
Q ss_pred HhcCCHHHHHHHHHHHhhhhhc--CC-CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 527 LHRGHLKLAQKVCDELGVMASS--VT-GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 527 l~~G~~~~A~~~l~~ll~L~~~--~~-~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
+..|++.+|.++++++...... .. ..|...........+.++...|++++|++.+.+++......++....+.++..
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567888899988888775432 11 23666666677777888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
+|.++...|++++|+.++.+|+.+....|++...+.++..+|.++.. |++ ++|+.++++++.+....|+....+.++
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~--~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL--SKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH--HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH--HHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999988 887 999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 748 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~a 748 (775)
..+|.++.. .|++++|+.++++|++.+...+.....+.++..++.++...|++++|..+
T Consensus 159 ~~lg~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 159 GKASRLLVR------QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999 99999999999999999999999888899999999999999999998874
No 16
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=8.2e-14 Score=150.95 Aligned_cols=261 Identities=13% Similarity=-0.000 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
.+.+...+|..+...|++++|...++++....+.. +...+...+......+...|++++|...+.+++.+++..+ ++
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~ 89 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--VW 89 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--cH
Confidence 45667778888889999999999999999887532 2221221221112467889999999999999999988766 77
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ--VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~--~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
.....+...++.++...|++++|.+.+++++...++.++. .....++..+|.++...|++++|..++.+++.++...+
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 7778889999999999999999999999999999887776 56788899999999999999999999999999998877
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH-HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL-ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 711 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~-~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~ 711 (775)
.+. .+.+...+|.++...|+. ++|+..+++++......+.. ...+.....++.++.. .|++++|..++++
T Consensus 170 ~~~-~~~~~~~la~~~~~~g~~--~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 170 PQQ-QLQCLAMLIQCSLARGDL--DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM------TGDKAAAANWLRH 240 (373)
T ss_dssp GGG-GHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH------CCCHHHHHHHHHh
Confidence 665 567888899999999998 99999999999887665552 3333333455566777 8999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 712 ASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 712 Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
++..... .......++..+|.++...|++++|.+..
T Consensus 241 a~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l 276 (373)
T 1hz4_A 241 TAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVL 276 (373)
T ss_dssp SCCCCCT--TCGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCC--cchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8764321 11111235678899999999999886643
No 17
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=8.8e-13 Score=143.41 Aligned_cols=220 Identities=15% Similarity=0.022 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++.++|..+..+|++++|...++++.+..|.... ....++ ......|++++|...+.+++.+.+ +
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg---~~~~~~~~~~~A~~~~~~al~~~p-----~-- 235 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD---AYINLG---NVLKEARIFDRAVAAYLRALSLSP-----N-- 235 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---HHHHHH---HHHHTTTCTTHHHHHHHHHHHHCT-----T--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHHHHH---HHHHHcCCHHHHHHHHHHHHhhCc-----C--
Confidence 567889999999999999999999999987664321 112222 367889999999999999988633 1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...+...++.++...|++++|++.+++++.. .+....++..+|.++...|++++|+..+.+++.+...
T Consensus 236 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----- 303 (388)
T 1w3b_A 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT----- 303 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----
Confidence 3467889999999999999999999999862 2334567899999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
...+...+|.++...|+. ++|+..+++++...- ....++..+|.++.. .|++++|+.++++|++.
T Consensus 304 -~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 304 -HADSLNNLANIKREQGNI--EEAVRLYRKALEVFP------EFAAAHSNLASVLQQ------QGKLQEALMHYKEAIRI 368 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCH--HHHHHHHHHHTTSCT------TCHHHHHHHHHHHHT------TTCCHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCC------CcHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhh
Confidence 246778899999999998 999999999987531 125688999999999 99999999999999864
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCC
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGR 741 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd 741 (775)
. ....++++.+|.++..+|+
T Consensus 369 ~------p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 S------PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp C------TTCHHHHHHHHHHHHHTCC
T ss_pred C------CCCHHHHHhHHHHHHHccC
Confidence 2 2346788899998888775
No 18
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.62 E-value=2.9e-14 Score=150.94 Aligned_cols=216 Identities=13% Similarity=0.047 Sum_probs=179.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.+...|+|++|...+.+++.+.+..+ |+...+.++.+++.++...|++++|+..+++++.+..+.|+....+.++..+
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678999999999999999988776 7777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH-HHHHHH
Q 004081 605 AEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL-ELRARA 682 (775)
Q Consensus 605 A~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~-~l~A~a 682 (775)
|.++... |++++|+.++.+|+.+....+.+...+.++..+|.++..+|++ ++|+..+++++......+.. +..+.+
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY--IEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 9999996 9999999999999999999888888889999999999999998 99999999999887666653 356678
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004081 683 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 752 (775)
Q Consensus 683 ~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f 752 (775)
+..+|.|+.. .|++.+|+.++++|+++....... .+...+..++..+. .|+.....++...|
T Consensus 202 ~~~lg~~~~~------~g~~~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 202 FLKKGLCQLA------ATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVN-EGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHHHHHH------TTCHHHHHHHHHGGGCC----------HHHHHHHHHHHH-TTCTTTHHHHHHHH
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHH-cCCHHHHHHHHHHh
Confidence 8999999999 999999999999998866655533 33456666777664 24433333333333
No 19
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.7e-13 Score=140.90 Aligned_cols=219 Identities=16% Similarity=0.091 Sum_probs=192.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc--ccchhHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVL 601 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~--gd~~~~a~aL 601 (775)
..++..|++++|..++.+++.++....+.+......+...++.++...|++++|++.+++++..+++. ++......++
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46889999999999999999987655433455678899999999999999999999999999988776 6677789999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc--CCHH
Q 004081 602 LLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH--GGLE 677 (775)
Q Consensus 602 l~lA~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~--G~~~ 677 (775)
..+|.++...|++++|+..+.+++.+.... ++....+.+...+|.++...|+. ++|+.++++++...... ++..
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY--EEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999877 77788899999999999999998 99999999999988776 5566
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhcc-------------------------------------
Q 004081 678 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE------------------------------------- 720 (775)
Q Consensus 678 l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~------------------------------------- 720 (775)
..+.++..+|.++.. .|++++|+.++++|++.+...+
T Consensus 193 ~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 193 NVAKTKNNLASCYLK------QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp HHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred HHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 778899999999999 9999999999999998765432
Q ss_pred ------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004081 721 ------DHELAAEAFYLIAIVFDKLGRLAEREEAAA 750 (775)
Q Consensus 721 ------~~~~~~evl~~LA~l~~~lGd~~~A~~aAa 750 (775)
.......++..+|.+|...|+.++|.++..
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 446778899999999999999999987443
No 20
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.58 E-value=3.8e-13 Score=131.68 Aligned_cols=194 Identities=11% Similarity=-0.093 Sum_probs=165.4
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhcCchHHHHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHH
Q 004081 487 AVFKGYKEAFSALKIAEEKFLSVSKSRILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 565 (775)
Q Consensus 487 a~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a 565 (775)
...|+|++|...++.... ......... .++ ..+...|++++|..++.+++.++...+ ++.....++..++
T Consensus 3 ~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA----HPATASGARFMLG---YVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVG 73 (203)
T ss_dssp ----CHHHHHHHHHHHHT----STTTHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC----ChHHHHHHHHHHH---HHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHH
Confidence 458999999995443321 111122222 233 468899999999999999999988776 7777889999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 004081 566 RTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 644 (775)
Q Consensus 566 ~ll~~~Gd~~eAl~~l~~aL~~~~~~gd-~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 644 (775)
.++...|++++|++.+++++..+++.++ ....+.++..+|.++...|++++|+..+.+++.++...+++...+.++..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999999999999998884 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhh
Q 004081 645 AELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 691 (775)
Q Consensus 645 a~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~l 691 (775)
|.++...|+. ++|...+++++....+.|+....+.++..++++..
T Consensus 154 a~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 154 GDLAQQEKNL--LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp HHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCcCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhh
Confidence 9999999998 99999999999999999999999999999987643
No 21
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=2.4e-13 Score=138.72 Aligned_cols=215 Identities=16% Similarity=0.056 Sum_probs=186.6
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc--ccchhHHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVLLL 603 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~--gd~~~~a~aLl~ 603 (775)
....|++++|..++++++.++....+.|......++..++.++...|++++|++.+++++..+++. ++....+.++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 456789999999999999987765544555678899999999999999999999999999988876 667788999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc--CCHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNL--DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH--GGLELR 679 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~--~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~--G~~~l~ 679 (775)
+|.++...|++++|+..+.+++.+..+.+. ....+.+...+|.++..+|+. ++|+..+++++...... ++....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA--EEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999999999999977633 477889999999999999998 99999999999987655 445678
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhcc---------------------------------------
Q 004081 680 ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE--------------------------------------- 720 (775)
Q Consensus 680 A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~--------------------------------------- 720 (775)
+.++..+|.++.. .|++++|+.+++++++.+....
T Consensus 169 ~~~~~~la~~~~~------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 169 AKTKNNLASCYLK------QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp HHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred HHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 8999999999999 9999999999999999865532
Q ss_pred ----CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004081 721 ----DHELAAEAFYLIAIVFDKLGRLAEREEA 748 (775)
Q Consensus 721 ----~~~~~~evl~~LA~l~~~lGd~~~A~~a 748 (775)
.......++..+|.+|...|+.++|.++
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4467788999999999999999998774
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.56 E-value=1.6e-11 Score=138.36 Aligned_cols=246 Identities=12% Similarity=0.008 Sum_probs=187.3
Q ss_pred hhHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHH
Q 004081 435 VGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI 514 (775)
Q Consensus 435 ~g~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~ 514 (775)
.+..+...+.++...|...-+.-.-.-... . .+. ..++..+|..+...|++++|...++.+.+..|.... .
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~---~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ 312 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESIN-L---HPT---PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP--T 312 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H---CCC---HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH--H
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh-c---CCC---chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH--H
Confidence 344455556666666665555432211111 1 111 567889999999999999999999999988764221 1
Q ss_pred HHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccc
Q 004081 515 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 594 (775)
Q Consensus 515 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~ 594 (775)
...++ ..+...|++++|...+.+++.+.+. + ..++..++.++...|++++|++.+++++...
T Consensus 313 -~~~l~---~~~~~~~~~~~A~~~~~~a~~~~~~----~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------ 374 (537)
T 3fp2_A 313 -YYHRG---QMYFILQDYKNAKEDFQKAQSLNPE----N----VYPYIQLACLLYKQGKFTESEAFFNETKLKF------ 374 (537)
T ss_dssp -HHHHH---HHHHHTTCHHHHHHHHHHHHHHCTT----C----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred -HHHHH---HHHHhcCCHHHHHHHHHHHHHhCCC----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 11222 3678999999999999999987431 2 3578899999999999999999999998742
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHH
Q 004081 595 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF----------GPNHAKMASNLIQ 664 (775)
Q Consensus 595 ~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~l----------G~~~f~~Al~lLe 664 (775)
.....++..+|.++...|+++.|+..+.+++.+................+|.++... |+. ++|+..++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~A~~~~~ 452 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF--NAAIKLLT 452 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH--HHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH--HHHHHHHH
Confidence 233567888999999999999999999999999987776666666677788899888 887 99999999
Q ss_pred HHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccC
Q 004081 665 QALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 721 (775)
Q Consensus 665 ~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~ 721 (775)
.++..--. ...++..+|.++.. .|++.+|+.++++|++.......
T Consensus 453 ~a~~~~p~------~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 453 KACELDPR------SEQAKIGLAQLKLQ------MEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHhCCC------CHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhCCCcHH
Confidence 99876322 23678999999999 99999999999999988755443
No 23
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=1.3e-11 Score=134.06 Aligned_cols=226 Identities=20% Similarity=0.081 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..+...+|..+...|++++|...++++.+..|... ..+ ..++ ..+...|++++|...+++++.+.+ .
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~-~~l~---~~~~~~g~~~~A~~~~~~al~~~p-------~ 201 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA--VAW-SNLG---CVFNAQGEIWLAIHHFEKAVTLDP-------N 201 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH--HHH-HHHH---HHHHTTTCHHHHHHHHHHHHHHCT-------T
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHH-HHHH---HHHHHcCCHHHHHHHHHHHHhcCC-------C
Confidence 36778899999999999999999999998765321 111 1222 367889999999999999998633 1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...++..++.++...|++++|+..+++++.. .+....++..+|.++...|+++.|+..+.+++.+...
T Consensus 202 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----- 269 (388)
T 1w3b_A 202 -FLDAYINLGNVLKEARIFDRAVAAYLRALSL------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH----- 269 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----
Confidence 3467899999999999999999999999863 2344678899999999999999999999999876321
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
...+...+|.++...|+. ++|+..+++++...-. ...++..+|.++.. .|++++|+.++++|++.
T Consensus 270 -~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 270 -FPDAYCNLANALKEKGSV--AEAEDCYNTALRLCPT------HADSLNNLANIKRE------QGNIEEAVRLYRKALEV 334 (388)
T ss_dssp -CHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT------TTCHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCcc------cHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhc
Confidence 235678899999999998 9999999999876321 24578899999998 99999999999999864
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
. .....++..+|.++...|+.++|.+
T Consensus 335 ~------p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 335 F------PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp C------TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred C------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 2235688999999999999999877
No 24
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.54 E-value=5.2e-13 Score=124.07 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=153.5
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
|+...+.+...++.++...|++++|++.+++++..+...++....+.++..+|.++...|++++|+.++.+++.++...+
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 77788999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
++...+.+...+|.++...|+. ++|...+++++......++....+.++..+|.++.. .|++++|+.++++|
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA------LGNHDQAMHFAEKH 155 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH------ccCHHHHHHHHHHH
Confidence 9999999999999999999998 999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHhccC
Q 004081 713 SEELQVLED 721 (775)
Q Consensus 713 l~~f~~l~~ 721 (775)
++.++++++
T Consensus 156 ~~~~~~~~d 164 (164)
T 3ro3_A 156 LEISREVGD 164 (164)
T ss_dssp HHHHTTC--
T ss_pred HHHHHHhCC
Confidence 999987653
No 25
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.53 E-value=5.3e-11 Score=131.17 Aligned_cols=246 Identities=13% Similarity=0.033 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++..+|..+...|++++|...++.+.+..|.. ...+. .++ ..+...|++++|...+++++.+.+. ++.
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~-~l~---~~~~~~g~~~~A~~~~~~~~~~~p~----~~~ 246 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDN--TEAFY-KIS---TLYYQLGDHELSLSEVRECLKLDQD----HKR 246 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC--HHHHH-HHH---HHHHHTTCHHHHHHHHHHHHHHCTT----CHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHH-HHH---HHHHHcCCHHHHHHHHHHHHHhCCC----hHH
Confidence 4678899999999999999999999999886532 12222 222 3678899999999999999886331 211
Q ss_pred hH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 556 LK--------TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 556 ~~--------~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
.. ......++.++...|++++|++.+++++.... .+......++..+|.++.+.|++++|+..+.+++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11 01124459999999999999999999987432 233344678999999999999999999999999987
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcC-----CC-CCCC--
Q 004081 628 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD-----PS-FSVS-- 699 (775)
Q Consensus 628 a~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~-----~~-~~~~-- 699 (775)
.. ..+.+...+|.++...|+. ++|...+++++..--.. ..++..++++.... .+ ....
T Consensus 325 ~p------~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 325 EP------DNVNALKDRAEAYLIEEMY--DEAIQDYETAQEHNEND------QQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp CT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTSSSC------HHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred Cc------ccHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCcch------HHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 42 1247788899999999998 99999999998753222 23444555332210 00 1112
Q ss_pred ---CChHHHHHHHHH-HHHHHHh-ccCH---HHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 700 ---QNPEAVLDPLRQ-ASEELQV-LEDH---ELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 700 ---g~~~~Al~~L~~-Al~~f~~-l~~~---~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.+..++...+++ ++...-. .... ......+..++.+|..+||++.|.+
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 245667777775 4432211 1221 3456688889999999999888765
No 26
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.53 E-value=6.5e-13 Score=135.56 Aligned_cols=217 Identities=17% Similarity=0.031 Sum_probs=179.8
Q ss_pred HhcCHHHHHHHHHHHHHHhhhcC--c-hHH-HHH-HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHH
Q 004081 488 VFKGYKEAFSALKIAEEKFLSVS--K-SRI-LLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 562 (775)
Q Consensus 488 ~~G~y~eAl~~L~~a~~~f~~~~--~-~~~-~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~ 562 (775)
..|++++|...++++.+.+.... + ... ... .++ ..+...|++++|...+.+++.+.....+.+......++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILA---LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 46888999999999998876542 2 221 111 222 478899999999999999999876553335556788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh--CCcHHHH
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNL--QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKA 638 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd--~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A 638 (775)
.++.++...|++++|++.+++++..+++.+. ......++..+|.++...|++++|+..+.+++.++... .+....+
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999998877644 35678899999999999999999999999999998766 4467788
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcC-------------------------------------------C
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG-------------------------------------------G 675 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G-------------------------------------------~ 675 (775)
.+...+|.++..+|+. ++|+.++++++......+ +
T Consensus 170 ~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 170 KTKNNLASCYLKQGKY--QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 8999999999999998 999999999998754421 3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 676 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 676 ~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
....+.++..+|.++.. .|++++|+.++++|++.
T Consensus 248 ~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRR------QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHh
Confidence 36677889999999999 99999999999999864
No 27
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.52 E-value=1.1e-10 Score=133.92 Aligned_cols=233 Identities=15% Similarity=0.036 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.++..++..+...|++++|..+++++.+..|.. ...+.. +. ..+...|++++|..+++++..+.+ .
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~-l~---~~~~~~g~~~~A~~~~~~~~~~~~----~---- 405 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEK--AVTWLA-VG---IYYLCVNKISEARRYFSKSSTMDP----Q---- 405 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--HHHHHH-HH---HHHHHTTCHHHHHHHHHHHHHHCT----T----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc--HHHHHH-HH---HHHHHhccHHHHHHHHHHHHHhCC----C----
Confidence 456778888889999999999999988665421 112221 22 367889999999999999988622 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
...++..++.++...|++++|++.+++++... .....++..++.++...|++++|+..+.+++.+...
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 473 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------ 473 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 24578899999999999999999999988632 234567888999999999999999999999876421
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHH-HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l-~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
...+...++.++...|+. ++|++++++++......+.... .+.++..+|.++.. .|++++|+..++++++.
T Consensus 474 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDM--QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK------LKMYDAAIDALNQGLLL 545 (597)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHh
Confidence 235678899999999998 9999999999988765443222 37899999999999 99999999999999876
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
.. ....++..++.+|...|+.++|.++.
T Consensus 546 ~p------~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 546 ST------NDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp SS------CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC------CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 41 23478999999999999999988743
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.51 E-value=1.6e-11 Score=138.47 Aligned_cols=233 Identities=14% Similarity=0.024 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
.+.++..+|..+...|++++|...++.+.+..|. ...+. .++ ..+...|++.+|...+.+++.+.+ +
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~-~l~---~~~~~~~~~~~A~~~~~~~~~~~~-----~- 308 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---PNSYI-FLA---LTLADKENSQEFFKFFQKAVDLNP-----E- 308 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHH-HHH---HHTCCSSCCHHHHHHHHHHHHHCT-----T-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---chHHH-HHH---HHHHHhcCHHHHHHHHHHHhccCC-----C-
Confidence 3668899999999999999999999999988764 22111 222 367889999999999999998643 1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
...++..++.++...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.+....
T Consensus 309 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--- 377 (537)
T 3fp2_A 309 --YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL--- 377 (537)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Confidence 345789999999999999999999999987432 234678899999999999999999999999875322
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCC----------CChHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS----------QNPEA 704 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~----------g~~~~ 704 (775)
..+...+|.++...|+. ++|+..+++++...............+..+|.++.. . |++.+
T Consensus 378 ---~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 378 ---PEVPTFFAEILTDRGDF--DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR------QSSQDPTQLDEEKFNA 446 (537)
T ss_dssp ---THHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH------HHTC----CCHHHHHH
T ss_pred ---hHHHHHHHHHHHHhCCH--HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH------HhhccchhhhHhHHHH
Confidence 35677899999999998 999999999998887766655444455666666666 5 89999
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004081 705 VLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 748 (775)
Q Consensus 705 Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~a 748 (775)
|+.+++++++... ....++..+|.+|...|+.++|.++
T Consensus 447 A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 447 AIKLLTKACELDP------RSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999988642 2237889999999999999998763
No 29
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.50 E-value=5.6e-11 Score=136.23 Aligned_cols=236 Identities=13% Similarity=0.041 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
....++..++..+...|++++|...++++.+..|..... +.... ..+...|++++|..++.++....+ +
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~-----~ 371 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV--YPLHL----ASLHESGEKNKLYLISNDLVDRHP-----E 371 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTT--HHHHH----HHHHHHTCHHHHHHHHHHHHHHCT-----T
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHH--HHHHH----HHHHHhCCHHHHHHHHHHHHhhCc-----c
Confidence 446778899999999999999999999999877643222 21111 246789999999999999987522 1
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
...+...++.++...|++++|++.+++++.. ......++..++.++...|++++|+..+.+++.+...
T Consensus 372 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 439 (597)
T 2xpi_A 372 ---KAVTWLAVGIYYLCVNKISEARRYFSKSSTM------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG--- 439 (597)
T ss_dssp ---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---
T ss_pred ---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 3467888999999999999999999999863 2234668889999999999999999999999876432
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 713 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al 713 (775)
...+...++.++...|+. ++|++++++++.... . ...++..+|.++.. .|++++|+.++++++
T Consensus 440 ---~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 440 ---THLPYLFLGMQHMQLGNI--LLANEYLQSSYALFQ--Y----DPLLLNELGVVAFN------KSDMQTAINHFQNAL 502 (597)
T ss_dssp ---CSHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHCC--C----CHHHHHHHHHHHHH------TTCHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC--C----ChHHHHHHHHHHHH------hCCHHHHHHHHHHHH
Confidence 245677899999999998 999999999986531 1 23678899999999 999999999999999
Q ss_pred HHHHhccCHHH-HHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 714 EELQVLEDHEL-AAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 714 ~~f~~l~~~~~-~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
+.....+.... ...++..++.++...|+.++|.++.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 98876553333 4789999999999999999987743
No 30
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.50 E-value=1.8e-12 Score=137.08 Aligned_cols=213 Identities=14% Similarity=0.004 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC----CHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHH
Q 004081 494 EAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG----HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 569 (775)
Q Consensus 494 eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G----~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~ 569 (775)
+|.+++++|.+..+..+. . +.+..+ ++++|...+.++ +.++.
T Consensus 3 ~a~~~~~~a~k~~~~~~~--~----------~~~~~~~~~~~~~~A~~~~~~a----------------------~~~~~ 48 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSG--F----------MKLFSGSDSYKFEEAADLCVQA----------------------ATIYR 48 (292)
T ss_dssp CHHHHHHHHHHHSSCCCT--H----------HHHHSCCSHHHHHHHHHHHHHH----------------------HHHHH
T ss_pred cHHHHHHHHHHHhCcCCC--c----------chhcCCCCCccHHHHHHHHHHH----------------------HHHHH
Confidence 566777777766642211 0 012222 477777777665 34567
Q ss_pred HcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 004081 570 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 649 (775)
Q Consensus 570 ~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l 649 (775)
..|+|++|++.+.+++.+....++....+.++..+|.++...|++++|+.++.+|+.+....|+....+.++..+|.++.
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred Hc-CCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCH-HHHHH
Q 004081 650 SF-GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH-ELAAE 727 (775)
Q Consensus 650 ~l-G~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~-~~~~e 727 (775)
.. |++ ++|+..+++++.+....++....+.++..+|.++.. .|++++|+.++++|++........ ...+.
T Consensus 129 ~~lg~~--~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 129 NDLHDY--AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL------DGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HTTCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HhhcCH--HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 95 998 999999999999999999988889999999999999 999999999999999877655543 36778
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 004081 728 AFYLIAIVFDKLGRLAEREEA 748 (775)
Q Consensus 728 vl~~LA~l~~~lGd~~~A~~a 748 (775)
++..+|.+|..+|+.++|..+
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999999998773
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.5e-10 Score=129.19 Aligned_cols=242 Identities=12% Similarity=-0.007 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHH
Q 004081 437 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 516 (775)
Q Consensus 437 ~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~ 516 (775)
..+...+.++...|...-+.-.-.-.... .+. ..++..+|..+...|++++|...++.+....|.... .+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~ 308 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIEL----FPR---VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS--VYY 308 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH----CCC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH--HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh----Ccc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH--HHH
Confidence 34444555555666655443322111111 112 678899999999999999999999999887664332 111
Q ss_pred HHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh
Q 004081 517 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE 596 (775)
Q Consensus 517 l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~ 596 (775)
.++ ..+...|++.+|...+.+++.+.+. + ..+...++.++...|++++|+..+++++.... .
T Consensus 309 -~l~---~~~~~~~~~~~A~~~~~~~~~~~~~----~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~ 370 (514)
T 2gw1_A 309 -HRG---QMNFILQNYDQAGKDFDKAKELDPE----N----IFPYIQLACLAYRENKFDDCETLFSEAKRKFP------E 370 (514)
T ss_dssp -HHH---HHHHHTTCTTHHHHHHHHHHHTCSS----C----SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST------T
T ss_pred -HHH---HHHHHhCCHHHHHHHHHHHHHhChh----h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc------c
Confidence 122 3678899999999999999886331 2 35788999999999999999999999987422 2
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHhHHHhc
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS---FGPNHAKMASNLIQQALPLILGH 673 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~---lG~~~f~~Al~lLe~aLp~il~~ 673 (775)
...++..+|.++...|+++.|+..+.+++.+..........+.+...+|.++.. .|+. ++|+..++.++...-.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~- 447 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF--IEATNLLEKASKLDPR- 447 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH--HHHHHHHHHHHHHCTT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHHHhCcc-
Confidence 356888999999999999999999999999987665544445578889999999 8987 9999999999876321
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhc
Q 004081 674 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 719 (775)
Q Consensus 674 G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l 719 (775)
...++..+|.++.. .|++.+|+.++++|++....-
T Consensus 448 -----~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 448 -----SEQAKIGLAQMKLQ------QEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp -----CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCSSH
T ss_pred -----cHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHhcccc
Confidence 24678899999999 999999999999999876443
No 32
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.4e-10 Score=129.53 Aligned_cols=239 Identities=13% Similarity=-0.020 Sum_probs=191.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
.....++..+|..+...|++++|...++.+.+..|. ...+ ..++ ..+...|++.+|...+.+++.+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~-~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~---- 302 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSY-IYMA---LIMADRNDSTEYYNYFDKALKLDSN---- 302 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC---HHHH-HHHH---HHHHTSSCCTTGGGHHHHHHTTCTT----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc---HHHH-HHHH---HHHHHCCCHHHHHHHHHHHhhcCcC----
Confidence 456788999999999999999999999999988765 2211 1222 3678999999999999999886331
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
+ ..++..++.++...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+++.+....
T Consensus 303 ~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 371 (514)
T 2gw1_A 303 N----SSVYYHRGQMNFILQNYDQAGKDFDKAKELD------PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA- 371 (514)
T ss_dssp C----THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC-
T ss_pred C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC-
Confidence 2 3578899999999999999999999998732 2235688999999999999999999999998874322
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
..+...+|.++...|+. ++|...++.++......+.....+.++..+|.++.... ..|++++|+.+++++
T Consensus 372 -----~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 372 -----PEVPNFFAEILTDKNDF--DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP---TVENFIEATNLLEKA 441 (514)
T ss_dssp -----SHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC---CTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh---hcCCHHHHHHHHHHH
Confidence 35678899999999998 99999999999887766654444568888888887611 058899999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 713 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 713 l~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
++... ....++..+|.++...|+.++|.++.
T Consensus 442 ~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 442 SKLDP------RSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCc------ccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88642 22467889999999999999987743
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.47 E-value=4.9e-12 Score=136.11 Aligned_cols=274 Identities=12% Similarity=-0.029 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHH
Q 004081 438 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 517 (775)
Q Consensus 438 ~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l 517 (775)
.+...+..+-..|.-.-+.-.-.-.+... + +...++..+|..+...|+|++|...++++.+..|... . ...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~-~~~ 137 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD----P--GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--K-ALM 137 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H-HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----c--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--H-HHH
Confidence 46667777777776555554333322211 1 1256788899999999999999999998888765321 1 111
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc
Q 004081 518 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK----TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL 593 (775)
Q Consensus 518 ~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~----~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd 593 (775)
.++ ..+...|++++|...+.+++.+.+... +.... ......++.++...|++++|++.+++++....
T Consensus 138 ~l~---~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---- 208 (365)
T 4eqf_A 138 ALA---VSYTNTSHQQDACEALKNWIKQNPKYK--YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG---- 208 (365)
T ss_dssp HHH---HHHHHTTCHHHHHHHHHHHHHHCHHHH--CC-------------------CCHHHHHHHHHHHHHHHHSC----
T ss_pred HHH---HHHHccccHHHHHHHHHHHHHhCccch--HHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc----
Confidence 222 357788999999999999888744211 10000 12233458888889999999999988887421
Q ss_pred chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc
Q 004081 594 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 673 (775)
Q Consensus 594 ~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~ 673 (775)
......++..+|.++...|++++|+..+.+++.+... .+.+...+|.++...|+. ++|+..+++++...-.
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~- 279 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATLANGDRS--EEAVEAYTRALEIQPG- 279 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTT-
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCC-
Confidence 1124678999999999999999999999999987532 256788899999999998 9999999999876322
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCH------HHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 674 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH------ELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 674 G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~------~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.+.++..+|.++.. .|++.+|+.++++|++.......+ .....++..++.++...|+.+.+.+
T Consensus 280 -----~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 280 -----FIRSRYNLGISCIN------LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp -----CHHHHHHHHHHHHH------HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred -----chHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 26789999999999 999999999999999998776553 3347889999999999999998877
Q ss_pred HH
Q 004081 748 AA 749 (775)
Q Consensus 748 aA 749 (775)
+.
T Consensus 349 ~~ 350 (365)
T 4eqf_A 349 AN 350 (365)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.46 E-value=6.7e-12 Score=134.35 Aligned_cols=271 Identities=13% Similarity=-0.028 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHH
Q 004081 437 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 516 (775)
Q Consensus 437 ~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~ 516 (775)
..+...+..+-..|.-.-+...-.-.+. ..+ +...++..+|..+...|++++|...++.+.+..|.... ..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~ 135 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDP--KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT---AL 135 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHH----SCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH---HH
Confidence 3566667777766765555443332221 111 22467788899999999999999999988887654211 11
Q ss_pred HHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 004081 517 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT------------EASLRHARTLLAANQFSEAAAVAHSL 584 (775)
Q Consensus 517 l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~------------~a~~~~a~ll~~~Gd~~eAl~~l~~a 584 (775)
..++ ..+...|++.+|...+.+++.+.+. ++.... ......+.++ ..|++++|++.++++
T Consensus 136 ~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a 207 (368)
T 1fch_A 136 MALA---VSFTNESLQRQACEILRDWLRYTPA----YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAA 207 (368)
T ss_dssp HHHH---HHHHHTTCHHHHHHHHHHHHHTSTT----TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHcCCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHH
Confidence 1222 3577889999999999988886432 221110 0001344454 889999999999888
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004081 585 FCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQ 664 (775)
Q Consensus 585 L~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe 664 (775)
+..... .....++..+|.++...|+++.|+..+.+++.+... ...+...+|.++..+|+. ++|+..++
T Consensus 208 ~~~~p~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~--~~A~~~~~ 275 (368)
T 1fch_A 208 VRLDPT----SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQS--EEAVAAYR 275 (368)
T ss_dssp HHHSTT----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHH
T ss_pred HHhCcC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCCH--HHHHHHHH
Confidence 864221 115788999999999999999999999999987432 246788899999999998 99999999
Q ss_pred HHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHHHhc
Q 004081 665 QALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA-----AEAFYLIAIVFDKL 739 (775)
Q Consensus 665 ~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~-----~evl~~LA~l~~~l 739 (775)
+++..-. ....++..+|.++.. .|++.+|+.++++|++.......+... ..++..++.++..+
T Consensus 276 ~al~~~~------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 276 RALELQP------GYIRSRYNLGISCIN------LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp HHHHHCT------TCHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCC------CcHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 9987632 234688999999999 999999999999999998777555444 78999999999999
Q ss_pred CCHHHHHHH
Q 004081 740 GRLAEREEA 748 (775)
Q Consensus 740 Gd~~~A~~a 748 (775)
|+.++|..+
T Consensus 344 g~~~~A~~~ 352 (368)
T 1fch_A 344 GQSDAYGAA 352 (368)
T ss_dssp TCGGGHHHH
T ss_pred CChHhHHHh
Confidence 999998773
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.45 E-value=1.2e-10 Score=122.82 Aligned_cols=208 Identities=11% Similarity=-0.011 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 558 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~ 558 (775)
...+|..+...|++++|...++.+.+..|... .. ...++ ..+...|++++|...+.++..+.+ .+ .
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~-~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~----~~----~ 188 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDA--EL-RELRA---ECFIKEGEPRKAISDLKAASKLKS----DN----T 188 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HH-HHHHH---HHHHHTTCHHHHHHHHHHHHTTCS----CC----H
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCch--HH-HHHHH---HHHHHCCCHHHHHHHHHHHHHhCC----CC----H
Confidence 45577788899999999999999998876322 11 11222 367889999999999999988632 12 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccch------hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV------ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~------~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
.+...++.++...|++++|++.+++++.......... ......+.+|.++...|++++|+..+.+++.+.. .
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~ 266 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--S 266 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C
Confidence 6788999999999999999999999987533221111 1123356779999999999999999999988753 3
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
++.....+...+|.++...|+. ++|+..++.++..-. . ...++..+|.++.. .|++++|+.++++|
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~--~----~~~~~~~~~~~~~~------~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKP--VEAIRICSEVLQMEP--D----NVNALKDRAEAYLI------EEMYDEAIQDYEAA 332 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT--T----CHHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCc--c----cHHHHHHHHHHHHH------cCCHHHHHHHHHHH
Confidence 4555667778899999999998 999999999987631 1 24688999999999 99999999999999
Q ss_pred HHHH
Q 004081 713 SEEL 716 (775)
Q Consensus 713 l~~f 716 (775)
++..
T Consensus 333 ~~~~ 336 (359)
T 3ieg_A 333 QEHN 336 (359)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8764
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.3e-11 Score=122.69 Aligned_cols=234 Identities=12% Similarity=-0.004 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
..+.++..+|..+...|+|++|...++.+.+.. .....+. .++ ..+...|++.+|...+.+++.+.+... .+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~-~~~---~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~ 74 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLN-NRA---AAEYEKGEYETAISTLNDAVEQGREMR-AD 74 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHH-HHH---HHHHHTTCHHHHHHHHHHHHHHHHHTT-CC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHH-HHH---HHHHHcccHHHHHHHHHHHHHhCcccc-cc
Confidence 457789999999999999999999999999876 2222222 222 367899999999999999999866432 13
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh--------------------cccchhHHHHHHHHHHHHHhcCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--------------------FNLQVENASVLLLLAEIHKKSGN 613 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~--------------------~gd~~~~a~aLl~lA~i~~~~G~ 613 (775)
......+...++.++...|++++|++.+++++..... .........++..+|.++...|+
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 3334788999999999999999999999999873211 11334567789999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcC
Q 004081 614 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 693 (775)
Q Consensus 614 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~ 693 (775)
++.|+..+.+++.+... ...+...+|.++..+|+. ++|+..++.++..... ...++..+|.++..
T Consensus 155 ~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~- 219 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSF--PEAIADCNKAIEKDPN------FVRAYIRKATAQIA- 219 (258)
T ss_dssp HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCHH------HHHHHHHHHHHHHH-
Confidence 99999999999987532 246788899999999998 9999999999876422 25678899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 004081 694 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIV 735 (775)
Q Consensus 694 ~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l 735 (775)
.|++.+|+.++++|++.....+......++...++.+
T Consensus 220 -----~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 220 -----VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred -----HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999987766655556666655543
No 37
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.44 E-value=1.3e-11 Score=114.60 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=147.3
Q ss_pred cccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 591 FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 591 ~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
.+++...+.++..+|.++...|++++|+..+.+++.++...+++...+.+...+|.++..+|+. ++|...+++++...
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF--ETASEYYKKTLLLA 79 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH
Confidence 3677888999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004081 671 LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 750 (775)
Q Consensus 671 l~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa 750 (775)
...++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.++...|+.++|.++..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999988655
Q ss_pred HHHHHH
Q 004081 751 LFKEYV 756 (775)
Q Consensus 751 ~f~ql~ 756 (775)
...++.
T Consensus 154 ~a~~~~ 159 (164)
T 3ro3_A 154 KHLEIS 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=9.1e-12 Score=127.60 Aligned_cols=234 Identities=13% Similarity=-0.001 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
++.++|..+...|+|++|+..++.+.+..|...... ..++ ..+...|++.+|...+.+++.. + .++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~l~---~~~~~~~~~~~A~~~~~~a~~~-~----~~~~~~ 73 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY---NRRA---VCYYELAKYDLAQKDIETYFSK-V----NATKAK 73 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTH---HHHH---HHHHHTTCHHHHHHHHHHHHTT-S----CTTTCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH---HHHH---HHHHHHhhHHHHHHHHHHHHhc-c----CchhHH
Confidence 467889999999999999999999998877544321 1122 3678899999999999999883 2 255556
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
..++..+|.++...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+. ...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~ 141 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------TTD 141 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------CCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------CCc
Confidence 7789999999999999999999999999742 2235789999999999999999999999998872 123
Q ss_pred HHHHHHHH-HHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCC---hHHHHHHHHHHH
Q 004081 638 ASATLTLA-ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQN---PEAVLDPLRQAS 713 (775)
Q Consensus 638 A~al~~La-~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~---~~~Al~~L~~Al 713 (775)
..+...+| .++. .++. ++|...++.++...... ..++..+|.++.. .|+ +.+|+.++++|+
T Consensus 142 ~~~~~~l~~~~~~-~~~~--~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 142 PKVFYELGQAYYY-NKEY--VKADSSFVKVLELKPNI------YIGYLWRARANAA------QDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHH-TTCH--HHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH------HSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHhCccc------hHHHHHHHHHHHH------cCcchhhHHHHHHHHHHH
Confidence 56677788 5554 5554 99999999998765332 4677788888887 565 888999999999
Q ss_pred HHHHhccC--HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 714 EELQVLED--HELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 714 ~~f~~l~~--~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
+.....++ .....+++..+|.+|...|+.+.|.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99987777 5667789999999999999999998743
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.6e-11 Score=128.53 Aligned_cols=233 Identities=9% Similarity=-0.007 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.++..+|..+...|+|++|...++++.+..|.......... ...+..|++.+|...+.+++...+ +
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~------~~~~~~~~~~~A~~~~~~~~~~~~-----~--- 88 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI------GTLVELNKANELFYLSHKLVDLYP-----S--- 88 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHH------HHHHHHTCHHHHHHHHHHHHHHCT-----T---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHH------HHHHHhhhHHHHHHHHHHHHHhCc-----C---
Confidence 34677788888899999999999999887765443221111 245788999999999999988633 1
Q ss_pred HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 557 KTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~G-d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...++..++.++...| ++++|++.+++++.. ......++..+|.++...|+++.|+..+.+++.+....
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---- 158 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---- 158 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----
Confidence 2457888999999999 999999999998863 23345678899999999999999999999999886432
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
..+...+|.++...|+. ++|...+++++..... ...++..+|.++.. .|++++|+.++++|++.
T Consensus 159 --~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~------~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 159 --HLPMLYIGLEYGLTNNS--KLAERFFSQALSIAPE------DPFVMHEVGVVAFQ------NGEWKTAEKWFLDALEK 222 (330)
T ss_dssp --SHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH------cccHHHHHHHHHHHHHH
Confidence 24566699999999998 9999999999876432 25678899999999 99999999999999998
Q ss_pred HHhccCH---HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 716 LQVLEDH---ELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 716 f~~l~~~---~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
....+.. .....++..+|.++...|+.++|.++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8766654 233568889999999999999887743
No 40
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.42 E-value=6.8e-12 Score=132.24 Aligned_cols=201 Identities=13% Similarity=0.015 Sum_probs=168.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.++..|+|.+|...+.+++...+... +........+.++.++...|++++|++.+++++.......+....+.++..+
T Consensus 84 ~~~~~~~y~~A~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 2qfc_A 84 MLCKQKRYKEIYNKVWNELKKEEYHP--EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCCCH--HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHhccccCCh--hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 56778888888888887776533211 2223445567788999999999999999999998766666677778999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLL-KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~-~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
|.++...|++++|+.++.+|+.++........ .+.+...+|.++..+|+. ++|+..+++++......++....+.++
T Consensus 162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--EESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH--HHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999999999999999988766544 448999999999999998 999999999999988888888889999
Q ss_pred HHHHHhhhcCCCCCCCCChHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAV-LDPLRQASEELQVLEDHELAAEAFYLIAIV 735 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~A-l~~L~~Al~~f~~l~~~~~~~evl~~LA~l 735 (775)
..+|.++.. .|++++| ..++++|+..++..++.......-....++
T Consensus 240 ~~lg~~y~~------~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~ 286 (293)
T 2qfc_A 240 YQRGECLRK------LEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRL 286 (293)
T ss_dssp HHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH------cCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHH
Confidence 999999999 9999999 889999999999999988766555555443
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.41 E-value=1e-10 Score=123.41 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---hcCchHH
Q 004081 438 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL---SVSKSRI 514 (775)
Q Consensus 438 ~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~---~~~~~~~ 514 (775)
.+...+.++...|...-+.-.-.-.... . + +...++..+|..+...|++++|...++.+.+..| .......
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~---~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 39 AYYRRATVFLAMGKSKAALPDLTKVIAL-K---M--DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-C---T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-C---C--CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 3444455666667665554332211211 1 1 1237789999999999999999999999988776 3222111
Q ss_pred HH--H----HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004081 515 LL--L----KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 588 (775)
Q Consensus 515 ~~--l----~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~ 588 (775)
.. + ........+...|++.+|...+.++....+ + ...+...++.++...|++++|++.+++++..
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 183 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-----W---DAELRELRAECFIKEGEPRKAISDLKAASKL- 183 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----C---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 11 0 000112578899999999999999988633 1 2467899999999999999999999998863
Q ss_pred hhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004081 589 YKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD------LLKASATLTLAELWLSFGPNHAKMASNL 662 (775)
Q Consensus 589 ~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~------~~~A~al~~La~l~l~lG~~~f~~Al~l 662 (775)
......++..+|.++...|+++.|+..+.+++.+....... .........+|.++...|+. ++|+..
T Consensus 184 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~ 256 (359)
T 3ieg_A 184 -----KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY--TDATSK 256 (359)
T ss_dssp -----CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHH
Confidence 23446789999999999999999999999998764322111 11122345679999999998 999999
Q ss_pred HHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCH
Q 004081 663 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL 742 (775)
Q Consensus 663 Le~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~ 742 (775)
+++++.... .+......++..+|.++.. .|++++|+.+++++++... ....++..+|.++...|+.
T Consensus 257 ~~~~~~~~~--~~~~~~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 257 YESVMKTEP--SVAEYTVRSKERICHCFSK------DEKPVEAIRICSEVLQMEP------DNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHHHHHHCC--SSHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCC--CchHHHHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCH
Confidence 999988653 3566777889999999999 9999999999999998632 2256899999999999999
Q ss_pred HHHHHH
Q 004081 743 AEREEA 748 (775)
Q Consensus 743 ~~A~~a 748 (775)
++|.++
T Consensus 323 ~~A~~~ 328 (359)
T 3ieg_A 323 DEAIQD 328 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998873
No 42
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.40 E-value=6.5e-11 Score=123.92 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC-CHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
.++..++..+...|++++|...++++.+..|.... .+. .++ ..+...| ++++|...+.+++.+.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~-~l~---~~~~~~~~~~~~A~~~~~~a~~~~~~------- 123 (330)
T 3hym_B 57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV--SWF-AVG---CYYLMVGHKNEHARRYLSKATTLEKT------- 123 (330)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHH-HHH---HHHHHSCSCHHHHHHHHHHHHTTCTT-------
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH--HHH-HHH---HHHHHhhhhHHHHHHHHHHHHHhCCc-------
Confidence 34566777788999999999999999987664322 222 222 3678899 999999999999886331
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...++..++.++...|++++|++.+++++..... ...++..+|.++...|++++|+..+.+++.+...
T Consensus 124 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----- 191 (330)
T 3hym_B 124 -YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE----- 191 (330)
T ss_dssp -CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-----
Confidence 2356889999999999999999999999875322 3456777999999999999999999999887532
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH---HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL---ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~---~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
...+...+|.++...|+. ++|...+++++......++. ...+.++..+|.++.. .|++++|+.+++++
T Consensus 192 -~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a 262 (330)
T 3hym_B 192 -DPFVMHEVGVVAFQNGEW--KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK------LKKYAEALDYHRQA 262 (330)
T ss_dssp -CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHcccH--HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH------hcCHHHHHHHHHHH
Confidence 257788899999999998 99999999999987665543 2336789999999999 99999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 713 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 713 l~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
++.... ...++..+|.++...|+.++|.+
T Consensus 263 ~~~~~~------~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 263 LVLIPQ------NASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHSTT------CSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhCcc------chHHHHHHHHHHHHhccHHHHHH
Confidence 987532 45688999999999999999876
No 43
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.40 E-value=8.5e-12 Score=131.51 Aligned_cols=192 Identities=12% Similarity=0.032 Sum_probs=166.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK--TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 601 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~--~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aL 601 (775)
...+..|+|.+|...+.+++..... ++... ......++.++...|++++|+..+++++......++....+.++
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEY----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccC----ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4677888999999888888774321 22222 34455688888889999999999999998766667777788999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHH
Q 004081 602 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 680 (775)
Q Consensus 602 l~lA~i~~~~G~~~~Al~~l~~AL~la~~~-g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A 680 (775)
..+|.+|...|+++.|+.++.+|+.+.... ++....+.++..+|.++..+|+. ++|+..+++++......++....+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--EESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999888 78888999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCC-hHHHHHHHHHHHHHHHhccCHHHHHH
Q 004081 681 RAFIAEAKCLLSDPSFSVSQN-PEAVLDPLRQASEELQVLEDHELAAE 727 (775)
Q Consensus 681 ~a~~~LAr~~lA~~~~~~~g~-~~~Al~~L~~Al~~f~~l~~~~~~~e 727 (775)
.++..+|.++.. .|+ +++|+.++++|+..++..++......
T Consensus 237 ~~~~~lg~~~~~------~g~~~~~A~~~~~~Al~i~~~~~~~~~~~~ 278 (293)
T 3u3w_A 237 QLYYQRGECLRK------LEYEEAEIEDAYKKASFFFDILEMHAYKEA 278 (293)
T ss_dssp HHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHTTCTGGGGG
T ss_pred HHHHHHHHHHHH------hCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999 895 59999999999999999998765443
No 44
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.8e-11 Score=132.11 Aligned_cols=234 Identities=10% Similarity=-0.036 Sum_probs=202.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH---------H-HH-HHHhhHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR---------I-LL-LKLQLLHERSLHRGHLKLAQKVCDELGVMAS 547 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~---------~-~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~ 547 (775)
...-|..+...|+|++|...+..+....+...+.. . +. -.+.-+...+...|+|++|.+.+.+++.+.+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34557778889999999999999998877655421 0 10 0111112578899999999999999999877
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 548 SVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 548 ~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
..+ +......+...++.++...|+++.|++.++.++..+...++....+++...+|.++...|++.+|+..+.+++..
T Consensus 87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 87 QFA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp TSC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Hcc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 665 555556677788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004081 628 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVL 706 (775)
Q Consensus 628 a~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~-~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al 706 (775)
+...++....+.+...++.++..+|+. .+|..+++.++......++ ....+..+..+|..+.. .+++.+|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~y~~A~ 236 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNL--AKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE------DKDYKTAF 236 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS------SSCHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH------HHhHHHHH
Confidence 999999999999999999999999998 9999999999998877765 57789999999999999 99999999
Q ss_pred HHHHHHHHHHHhccCH
Q 004081 707 DPLRQASEELQVLEDH 722 (775)
Q Consensus 707 ~~L~~Al~~f~~l~~~ 722 (775)
.++.+|++.|...+..
T Consensus 237 ~~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 237 SYFFESFESYHNLTTH 252 (434)
T ss_dssp HHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 9999999999988764
No 45
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.37 E-value=1.8e-10 Score=121.28 Aligned_cols=207 Identities=9% Similarity=-0.086 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
...+...+..+..+|+|++|...++.+.+..+..................+...|++++|...+.+++.+..... |+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~ 152 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chH
Confidence 445566777888999999999999999887654322221111111112467788999999999999998765433 666
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh-HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE-NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~-~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
..+.++..+|.++...|+|++|++.+++++..++...+... .+.++..+|.++...|++++|+.++.+|+.++...++.
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 67889999999999999999999999999988877655433 34899999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHhHHHhcCCHHHHHHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMA-SNLIQQALPLILGHGGLELRARAFIAE 686 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~A-l~lLe~aLp~il~~G~~~l~A~a~~~L 686 (775)
...+.+...+|.++..+|+. ++| ...++.++......++....-..-..+
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~--~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~ 283 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYE--EAEIEDAYKKASFFFDILEMHAYKEALVNKI 283 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhCcHhhHHHHHHHH
Confidence 88999999999999999999 999 888999999999999877744443333
No 46
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.37 E-value=1.5e-10 Score=121.05 Aligned_cols=265 Identities=11% Similarity=-0.040 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHH
Q 004081 437 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 516 (775)
Q Consensus 437 ~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~ 516 (775)
..+...+..+-..|.-.-+...-.-.... .+ +...++..+|..+...|++++|...++++.+..|... .. .
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~-~ 92 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA----AP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AV-H 92 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HH-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HH-H
Confidence 34666777777777655554433322221 11 1246678889999999999999999999988765321 11 1
Q ss_pred HHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHH--------------HH-HHHHcCChHHHHHHH
Q 004081 517 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH--------------AR-TLLAANQFSEAAAVA 581 (775)
Q Consensus 517 l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~--------------a~-ll~~~Gd~~eAl~~l 581 (775)
..++ ..+...|++.+|...+.+++...+. +.. +.... +. ++...|++++|++.+
T Consensus 93 ~~la---~~~~~~~~~~~A~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 93 AALA---VSHTNEHNANAALASLRAWLLSQPQ----YEQ----LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HHHH---HHHHHTTCHHHHHHHHHHHHHTSTT----TTT----C--------------------CCTTSHHHHHHHHHHH
T ss_pred HHHH---HHHHHcCCHHHHHHHHHHHHHhCCc----cHH----HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 1222 3578899999999999999886442 211 11222 33 477888999999999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 004081 582 HSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASN 661 (775)
Q Consensus 582 ~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~ 661 (775)
++++.... ....++..+|.++...|++++|+..+.+++.+... ...+...+|.++...|+. ++|+.
T Consensus 162 ~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~--~~A~~ 227 (327)
T 3cv0_A 162 HAALEMNP------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRP--QEALD 227 (327)
T ss_dssp HHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHH
T ss_pred HHHHhhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCH--HHHHH
Confidence 98886422 24678999999999999999999999999887432 246778899999999998 99999
Q ss_pred HHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHH------HHHHHHHHHHH
Q 004081 662 LIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL------AAEAFYLIAIV 735 (775)
Q Consensus 662 lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~------~~evl~~LA~l 735 (775)
.+++++..... ...++..+|.++.. .|++++|+.++++|++.......... ...++..++.+
T Consensus 228 ~~~~a~~~~~~------~~~~~~~l~~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 228 AYNRALDINPG------YVRVMYNMAVSYSN------MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHHHHHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC------CHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 99999876422 24578899999999 99999999999999998866555444 67899999999
Q ss_pred HHhcCCHHHHHH
Q 004081 736 FDKLGRLAEREE 747 (775)
Q Consensus 736 ~~~lGd~~~A~~ 747 (775)
+...|+.++|..
T Consensus 296 ~~~~g~~~~A~~ 307 (327)
T 3cv0_A 296 LNVMNRPDLVEL 307 (327)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhcCCHHHHHH
Confidence 999999999876
No 47
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.36 E-value=1.2e-10 Score=122.64 Aligned_cols=200 Identities=8% Similarity=-0.096 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHH---HHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI---LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSV 549 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~---~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~ 549 (775)
.+....+.+.+..+...|+|++|...++.++...+....... +...++ ..+...|++++|...+.+++.+....
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVA---AYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH---HHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHH---HHHHcccCHHHHHHHHHHHHHHhccc
Confidence 344556667788888999999999999999875543333221 111222 35678899999999999999975544
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 550 TGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 550 ~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~-gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
. |......++..+|.++...|+|++|++.+++++...+.. ++....+.++..+|.++...|++++|+.++.+|+.++
T Consensus 149 ~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 149 I--DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp S--CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4 666677889999999999999999999999999988877 6677788999999999999999999999999999999
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHH
Q 004081 629 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 678 (775)
Q Consensus 629 ~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l 678 (775)
...++....+.+...+|.++..+|.. +++|...+++++......|+...
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~~Al~i~~~~~~~~~ 275 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCTGG
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999963 48999999999999998888543
No 48
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.34 E-value=2.9e-10 Score=125.28 Aligned_cols=274 Identities=14% Similarity=0.045 Sum_probs=201.2
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcC---chHHH
Q 004081 439 YLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS---KSRIL 515 (775)
Q Consensus 439 ~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~---~~~~~ 515 (775)
+...+.++...|...-+.-.-.-.... .. +...++..+|..+...|++++|...++.+.+..|... .....
T Consensus 63 ~~~l~~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 63 YYRRATVFLAMGKSKAALPDLTKVIQL-KM-----DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 344455666667765554322111111 11 1257889999999999999999999999987765433 21111
Q ss_pred HH------HHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 516 LL------KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 516 ~l------~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
.. ........+...|++.+|...+.+++.+.+ + ...+...++.++...|++++|++.+++++...
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 207 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-----W---DAELRELRAECFIKEGEPRKAISDLKAASKLK- 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C---ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 10 000011467889999999999999988633 1 34678899999999999999999999998743
Q ss_pred hcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH------HHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004081 590 KFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL------LKASATLTLAELWLSFGPNHAKMASNLI 663 (775)
Q Consensus 590 ~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~------~~A~al~~La~l~l~lG~~~f~~Al~lL 663 (775)
.....++..+|.++...|+++.|+..+.+++.+........ ........+|.++...|+. ++|+.++
T Consensus 208 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~ 280 (450)
T 2y4t_A 208 -----NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY--TDATSKY 280 (450)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCH--HHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHH
Confidence 23367899999999999999999999999987642211000 0111224459999999998 9999999
Q ss_pred HHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHH
Q 004081 664 QQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLA 743 (775)
Q Consensus 664 e~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~ 743 (775)
++++... -.+......++..+|.++.. .|++++|+.++++|++... ....++..+|.++...|+.+
T Consensus 281 ~~~l~~~--p~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 281 ESVMKTE--PSIAEYTVRSKERICHCFSK------DEKPVEAIRVCSEVLQMEP------DNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HHHHHHC--CSSHHHHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcC--CcchHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHhcCHH
Confidence 9998753 34566667899999999999 9999999999999987632 23478999999999999999
Q ss_pred HHHHH
Q 004081 744 EREEA 748 (775)
Q Consensus 744 ~A~~a 748 (775)
+|.++
T Consensus 347 ~A~~~ 351 (450)
T 2y4t_A 347 EAIQD 351 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98773
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.33 E-value=2.8e-11 Score=122.13 Aligned_cols=196 Identities=16% Similarity=0.076 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.++.++|..+...|+|++|...++++.+..|.... ....++ ..+...|++++|...+++++.+.+ +
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg---~~~~~~g~~~~A~~~~~~al~~~P-----~--- 71 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE---ALYWLA---RTQLKLGLVNPALENGKTLVARTP-----R--- 71 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH---HHHHHH---HHHHHTTCHHHHHHHHHHHHHHCT-----T---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHH---HHHHHcCCHHHHHHHHHHHHHhCC-----C---
Confidence 56789999999999999999999999877664322 122222 367889999999999999999733 2
Q ss_pred HHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAA-----------NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 625 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~-----------Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL 625 (775)
...++..++.++... |++++|+..+++++.. .+....++..+|.++...|++++|+..+.+|+
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV------NPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 356788999999999 9999999999999973 23456788999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004081 626 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 705 (775)
Q Consensus 626 ~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~A 705 (775)
.+. . ...+...+|.++..+|+. ++|+..++.++..-- .-..++..+|.++.. .|++++|
T Consensus 146 ~~~---~----~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~P------~~~~~~~~la~~~~~------~g~~~~A 204 (217)
T 2pl2_A 146 ALE---D----TPEIRSALAELYLSMGRL--DEALAQYAKALEQAP------KDLDLRVRYASALLL------KGKAEEA 204 (217)
T ss_dssp HHC---C----CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHST------TCHHHHHHHHHHHTC-------------
T ss_pred hcc---c----chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CChHHHHHHHHHHHH------ccCHHHH
Confidence 986 2 246678899999999998 999999999987632 124678899999999 9999999
Q ss_pred HHHHHHHH
Q 004081 706 LDPLRQAS 713 (775)
Q Consensus 706 l~~L~~Al 713 (775)
+.+++++.
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99888764
No 50
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.3e-10 Score=127.71 Aligned_cols=216 Identities=14% Similarity=0.026 Sum_probs=193.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCC---------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccc
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVD---------MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 594 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D---------~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~ 594 (775)
+..+..|+|.+|.+.+.+++...+..+... ......++..++.++...|++++|.+.+.+++......++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 356788999999999999998755433110 12234578899999999999999999999999988887777
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcC
Q 004081 595 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 674 (775)
Q Consensus 595 ~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G 674 (775)
.....+...++.++...|+++.|...+.+++.++...+.....+.+...||.++...|+. .+|..++++++......+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY--KDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh--HHHHHHHHHHHHHHHhcc
Confidence 777788999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 675 GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH-ELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 675 ~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~-~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
+....+.++..+++++.. .|++.+|..++++|+.....+.++ ...+.++..++.+|...|+...|..
T Consensus 170 ~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHK------LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp CSTHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999 999999999999999999998875 5678899999999999999999866
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.30 E-value=9.1e-11 Score=118.89 Aligned_cols=212 Identities=15% Similarity=-0.029 Sum_probs=170.0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhh
Q 004081 467 SDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMA 546 (775)
Q Consensus 467 ~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~ 546 (775)
.+..+.+....++..+|..+...|+|++|...++.+.+..|.. ... ...++ ..+...|++.+|...+.+++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~-~~~la---~~~~~~~~~~~A~~~~~~a~~~~ 101 (252)
T 2ho1_A 28 KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS--ADA-HAALA---VVFQTEMEPKLADEEYRKALASD 101 (252)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC--HHH-HHHHH---HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh--HHH-HHHHH---HHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444555668999999999999999999999999999876532 111 11222 36788999999999999999863
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 547 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 547 ~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
+ + ...+...++.++...|++++|++.+++++. .+.......++..+|.++...|++++|+..+.+++.
T Consensus 102 ~-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 102 S-----R---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp T-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-----C---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 1 246788999999999999999999999875 234566788999999999999999999999999988
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004081 627 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 706 (775)
Q Consensus 627 la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al 706 (775)
+... ...+...+|.++...|+. ++|...++.++.... ....++..++.++.. .|++++|+
T Consensus 170 ~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~g~~~~A~ 229 (252)
T 2ho1_A 170 LNRN------QPSVALEMADLLYKEREY--VPARQYYDLFAQGGG------QNARSLLLGIRLAKV------FEDRDTAA 229 (252)
T ss_dssp HCSC------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTSC------CCHHHHHHHHHHHHH------TTCHHHHH
T ss_pred cCcc------cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCc------CcHHHHHHHHHHHHH------ccCHHHHH
Confidence 7531 246678899999999998 999999999876432 123567888999998 99999999
Q ss_pred HHHHHHHHHH
Q 004081 707 DPLRQASEEL 716 (775)
Q Consensus 707 ~~L~~Al~~f 716 (775)
.+++++.+.+
T Consensus 230 ~~~~~~~~~~ 239 (252)
T 2ho1_A 230 SYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHC
Confidence 9999998765
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.29 E-value=8.1e-10 Score=111.21 Aligned_cols=206 Identities=11% Similarity=-0.012 Sum_probs=169.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc-cchhHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLL 602 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g-d~~~~a~aLl 602 (775)
..++..|+|.+|...+.+++.+. . + ..++..++.++...|++++|++.+++++......+ +......++.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~---~--~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH---K--D----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---C--C----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh---c--c----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 46889999999999999999863 2 2 46789999999999999999999999998776543 3444588999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHH--------------------HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004081 603 LLAEIHKKSGNAVLGIPYALASLSFC--------------------QLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 662 (775)
Q Consensus 603 ~lA~i~~~~G~~~~Al~~l~~AL~la--------------------~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~l 662 (775)
.+|.++...|++++|+..+.+++.+. .........+.+...+|.++...|+. ++|+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~ 161 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW--PNAVKA 161 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH--HHHHHH
Confidence 99999999999999999999999842 11124556678888999999999998 999999
Q ss_pred HHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCH
Q 004081 663 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL 742 (775)
Q Consensus 663 Le~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~ 742 (775)
+++++..... ...++..+|.++.. .|++++|+.++++|++... ....++..+|.++...|+.
T Consensus 162 ~~~a~~~~~~------~~~~~~~l~~~~~~------~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 162 YTEMIKRAPE------DARGYSNRAAALAK------LMSFPEAIADCNKAIEKDP------NFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCcc------cHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHhCH------HHHHHHHHHHHHHHHHhhH
Confidence 9999876432 24788999999999 9999999999999988642 2357889999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 004081 743 AEREEAAALFKEYVLA 758 (775)
Q Consensus 743 ~~A~~aAa~f~ql~~~ 758 (775)
++|.++.....++...
T Consensus 224 ~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 224 ASALETLDAARTKDAE 239 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9998855555554433
No 53
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.28 E-value=6.6e-10 Score=118.73 Aligned_cols=216 Identities=8% Similarity=-0.033 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHH------HH----H-hhHHHHHHhcCCHHHHHHHHHHHhh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL------LK----L-QLLHERSLHRGHLKLAQKVCDELGV 544 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~------l~----l-~l~~~~al~~G~~~~A~~~l~~ll~ 544 (775)
..++.++|..+...|++++|...++.+....|......... .. . .+ ...+..|++.+|...+.+++.
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL--GSLLSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH--HHHhhcccHHHHHHHHHHHHH
Confidence 56889999999999999999999999998876544322111 00 0 11 233489999999999999998
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004081 545 MASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 624 (775)
Q Consensus 545 L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~A 624 (775)
+.+... ...++..++.++...|++++|++.+++++... .....++..+|.++...|+++.|+..+.++
T Consensus 210 ~~p~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 210 LDPTSI------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------PNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HSTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 743211 35678899999999999999999999998742 233678999999999999999999999999
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHH-----HHHHHHHHHhhhcCCCCCCC
Q 004081 625 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR-----ARAFIAEAKCLLSDPSFSVS 699 (775)
Q Consensus 625 L~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~-----A~a~~~LAr~~lA~~~~~~~ 699 (775)
+.+.. ....+...+|.++..+|+. ++|+..++.++......++.... +.++..+|.++.. .
T Consensus 278 l~~~~------~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~ 343 (368)
T 1fch_A 278 LELQP------GYIRSRYNLGISCINLGAH--REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM------L 343 (368)
T ss_dssp HHHCT------TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH------H
T ss_pred HHhCC------CcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH------h
Confidence 98743 2246788899999999998 99999999999988776555444 7899999999999 9
Q ss_pred CChHHHHHHHHHHHHHHHhc
Q 004081 700 QNPEAVLDPLRQASEELQVL 719 (775)
Q Consensus 700 g~~~~Al~~L~~Al~~f~~l 719 (775)
|++++|...++++++.|++.
T Consensus 344 g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 344 GQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp TCGGGHHHHHTTCHHHHHHH
T ss_pred CChHhHHHhHHHHHHHHHHh
Confidence 99999999999999988753
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=2.1e-09 Score=111.06 Aligned_cols=220 Identities=12% Similarity=0.034 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHh----cCCHHHHHHHHHHHhhhhhcCCC
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
..++..+|..+...|++++|...++.+.+ + ++.. ....++ ..+.. .|++++|..++.++..+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~--~~~~-a~~~lg---~~~~~g~~~~~~~~~A~~~~~~a~~~----~- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--L--KENS-GCFNLG---VLYYQGQGVEKNLKKAASFYAKACDL----N- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T--TCHH-HHHHHH---HHHHHTSSSCCCHHHHHHHHHHHHHT----T-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--C--CCHH-HHHHHH---HHHHcCCCcCCCHHHHHHHHHHHHHC----C-
Confidence 56788999999999999999999999887 1 2222 122233 25677 99999999999999875 2
Q ss_pred CChhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 004081 552 VDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK----SGNAVLGIPYALA 623 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~----~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~----~G~~~~Al~~l~~ 623 (775)
...+...++.++.. .|++++|++.+++++.. ....++..+|.++.. .|++++|+..+.+
T Consensus 73 -----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 73 -----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 35688899999999 99999999999999862 257889999999999 9999999999999
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 004081 624 SLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS 699 (775)
Q Consensus 624 AL~la~~~g~~~~~A~al~~La~l~l~----lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~ 699 (775)
|+.+. ...+...||.++.. .|+. ++|+..++.++.. ++ ..++..+|.++..+. +..
T Consensus 140 a~~~~--------~~~a~~~lg~~~~~~~~~~~~~--~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~--~~~ 199 (273)
T 1ouv_A 140 ACDLN--------DGDGCTILGSLYDAGRGTPKDL--KKALASYDKACDL----KD----SPGCFNAGNMYHHGE--GAT 199 (273)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTC--SSC
T ss_pred HHhcC--------cHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC--CCC
Confidence 98752 24677889999988 8887 9999999999765 43 467888998888732 247
Q ss_pred CChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHh----cCCHHHHHHHH
Q 004081 700 QNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK----LGRLAEREEAA 749 (775)
Q Consensus 700 g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~----lGd~~~A~~aA 749 (775)
+++.+|+.++++|++. +. ..+++.+|.+|.. .|+.++|.++.
T Consensus 200 ~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 200 KNFKEALARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp CCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred ccHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 8899999999999864 33 5688999999999 99998887743
No 55
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.22 E-value=6e-10 Score=119.67 Aligned_cols=216 Identities=12% Similarity=0.012 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHH---HH-HhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL---LK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~---l~-l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
..++.++|..+...|+|++|...++++.+..|......... .. ...+...+...|++++|...+++++.+.+...
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 211 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI- 211 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-
Confidence 57799999999999999999999999999877644432111 11 11112577889999999999999999743211
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
+ ..++..++.++...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+...
T Consensus 212 -~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~- 279 (365)
T 4eqf_A 212 -D----PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG- 279 (365)
T ss_dssp -C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 2 4578899999999999999999999999743 234678999999999999999999999999988432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH------HHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL------ELRARAFIAEAKCLLSDPSFSVSQNPEAV 705 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~------~l~A~a~~~LAr~~lA~~~~~~~g~~~~A 705 (775)
.+.+...+|.++..+|+. ++|+..+++++......++. ...+.++..|++++.. .|+.+.+
T Consensus 280 -----~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a 346 (365)
T 4eqf_A 280 -----FIRSRYNLGISCINLGAY--REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL------MDQPELF 346 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH------HTCHHHH
T ss_pred -----chHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH------cCcHHHH
Confidence 267888999999999999 99999999999988765542 2346788999999998 8888888
Q ss_pred HHHHHHHHHHHH
Q 004081 706 LDPLRQASEELQ 717 (775)
Q Consensus 706 l~~L~~Al~~f~ 717 (775)
....+++++.|+
T Consensus 347 ~~~~~~~l~~~~ 358 (365)
T 4eqf_A 347 QAANLGDLDVLL 358 (365)
T ss_dssp HHHHTTCCGGGT
T ss_pred HHHHHhhHHHHH
Confidence 887777666554
No 56
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=7.5e-10 Score=123.10 Aligned_cols=232 Identities=12% Similarity=0.014 Sum_probs=149.6
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHH
Q 004081 486 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 565 (775)
Q Consensus 486 la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a 565 (775)
+...|++++|+..++++.+.-|...... ..+... ........|++.+|...+++++.+.+ + ...+...+|
T Consensus 185 l~~~~~~~~al~~~~~al~l~p~~~~~~-~~l~~~-~~~~~~~~~~~~~a~~~~~~al~~~~-----~---~~~~~~~lg 254 (472)
T 4g1t_A 185 LDNWPPSQNAIDPLRQAIRLNPDNQYLK-VLLALK-LHKMREEGEEEGEGEKLVEEALEKAP-----G---VTDVLRSAA 254 (472)
T ss_dssp HHHSCCCCCTHHHHHHHHHHCSSCHHHH-HHHHHH-HHHCC------CHHHHHHHHHHHHCS-----S---CHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHhhcCCcchHHH-HHHHHH-HHHHHhhhhHHHHHHHHHHHHHHhCc-----c---HHHHHHHHH
Confidence 4456888999999999988765432211 111111 11234567899999999999988633 2 356788999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc-------------------CChhhHHHHHHHHHH
Q 004081 566 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-------------------GNAVLGIPYALASLS 626 (775)
Q Consensus 566 ~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~-------------------G~~~~Al~~l~~AL~ 626 (775)
.++...|++++|++.+++++... +..+.++..+|.+|... +.++.|+..+.+++.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYI------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHhC------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 99999999999999999998742 23456677777776432 223444555555544
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004081 627 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 706 (775)
Q Consensus 627 la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al 706 (775)
+-.. .+.+...+|.++..+|+. ++|+..+++++..- .+.......+..+|..... ..|+.++|+
T Consensus 329 ~~~~------~~~~~~~lg~~~~~~~~~--~~A~~~~~kaL~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~Ai 392 (472)
T 4g1t_A 329 ANDN------LFRVCSILASLHALADQY--EEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLY-----QMKCEDKAI 392 (472)
T ss_dssp HCTT------TCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHH-----TSSCHHHHH
T ss_pred cCCc------hhhhhhhHHHHHHHhccH--HHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHH-----HCCCHHHHH
Confidence 4322 234556799999999998 99999999998653 3445555667777765432 168899999
Q ss_pred HHHHHHHHHHHhcc------------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004081 707 DPLRQASEELQVLE------------------DHELAAEAFYLIAIVFDKLGRLAEREEAA 749 (775)
Q Consensus 707 ~~L~~Al~~f~~l~------------------~~~~~~evl~~LA~l~~~lGd~~~A~~aA 749 (775)
.++++|+++..... ......+++..+|.+|...|+.++|.++-
T Consensus 393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999986421111 11122468889999999999999988743
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.20 E-value=3.5e-10 Score=113.28 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=146.5
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
.+-.+.++..+|..+...|+|++|...++++.+..|.. ...+ ..++ ..+...|++.+|...+.++..+.+
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~-~~la---~~~~~~~~~~~A~~~~~~~~~~~~---- 88 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED--AIPY-INFA---NLLSSVNELERALAFYDKALELDS---- 88 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTC--HHHH-HHHH---HHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc--HHHH-HHHH---HHHHHcCCHHHHHHHHHHHHHcCC----
Confidence 33446778889999999999999999999998765532 1111 1222 367889999999999999988633
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
+ ...+...++.++...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.+...
T Consensus 89 -~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 157 (243)
T 2q7f_A 89 -S---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN- 157 (243)
T ss_dssp -T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-
T ss_pred -c---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-
Confidence 1 356788999999999999999999999987432 23567889999999999999999999999887532
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 711 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~ 711 (775)
...+...+|.++...|+. ++|+..+++++..... ...++..+|.++.. .|++.+|+.++++
T Consensus 158 -----~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~------~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 158 -----DTEARFQFGMCLANEGML--DEALSQFAAVTEQDPG------HADAFYNAGVTYAY------KENREKALEMLDK 218 (243)
T ss_dssp -----CHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH------TTCTTHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCcc------cHHHHHHHHHHHHH------ccCHHHHHHHHHH
Confidence 245778899999999999 9999999999876422 24578999999999 9999999999999
Q ss_pred HHHHH
Q 004081 712 ASEEL 716 (775)
Q Consensus 712 Al~~f 716 (775)
+++..
T Consensus 219 ~~~~~ 223 (243)
T 2q7f_A 219 AIDIQ 223 (243)
T ss_dssp HHHHC
T ss_pred HHccC
Confidence 98754
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.19 E-value=3e-09 Score=108.74 Aligned_cols=208 Identities=9% Similarity=-0.044 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCch-HHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~-~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
.++..+|..+...|+|++|...++.+.+ .+..... ......++ ..+...|++++|...+.+++.+.+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg---~~~~~~~~~~~A~~~~~~a~~~~~~------- 106 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG---KILMKKGQDSLAIQQYQAAVDRDTT------- 106 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHSTT-------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH---HHHHHcccHHHHHHHHHHHHhcCcc-------
Confidence 3688899999999999999999999987 3322221 11112222 4688999999999999999997331
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...++..++.++...|++++|++.+++++.. ......++..+|.+....+++++|+..+.+++.+....
T Consensus 107 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---- 175 (272)
T 3u4t_A 107 -RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI---- 175 (272)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc----
Confidence 2357899999999999999999999998853 44557888999944445569999999999999876432
Q ss_pred HHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHhHHHhcCC--HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGP---NHAKMASNLIQQALPLILGHGG--LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 710 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~---~~f~~Al~lLe~aLp~il~~G~--~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~ 710 (775)
..+...+|.++..+|. . ++|...+++++......++ ......++..+|.++.. .|++.+|+.+++
T Consensus 176 --~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~ 245 (272)
T 3u4t_A 176 --YIGYLWRARANAAQDPDTKQ--GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI------NRDKVKADAAWK 245 (272)
T ss_dssp --HHHHHHHHHHHHHHSTTCSS--CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHcCcchhh--HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH------cCCHHHHHHHHH
Confidence 4677789999999998 6 8899999999999876666 45566899999999999 999999999999
Q ss_pred HHHHHH
Q 004081 711 QASEEL 716 (775)
Q Consensus 711 ~Al~~f 716 (775)
+|++..
T Consensus 246 ~al~~~ 251 (272)
T 3u4t_A 246 NILALD 251 (272)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999765
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.19 E-value=1.7e-10 Score=116.29 Aligned_cols=183 Identities=17% Similarity=0.066 Sum_probs=148.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|++.+|...+++++.+.+ . ...++..++.++...|++++|+..+++++.. .+....++..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p-------~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~ 78 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENP-------Q-DPEALYWLARTQLKLGLVNPALENGKTLVAR------TPRYLGGYMV 78 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSS-------S-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHH
Confidence 367899999999999999998632 2 3568999999999999999999999999973 2344778899
Q ss_pred HHHHHHhc-----------CChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 604 LAEIHKKS-----------GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 604 lA~i~~~~-----------G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
+|.++... |++++|+..+.+++.+.- ..+.+...+|.++..+|+. ++|+..+++++..-
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~-- 148 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP------RYAPLHLQRGLVYALLGER--DKAEASLKQALALE-- 148 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcc--
Confidence 99999999 999999999999998843 2346778899999999998 99999999998875
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 673 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 673 ~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.+ ..+++.+|.++.. .|++++|+..+++|++..- .-..++..+|.++...|+.++|.+
T Consensus 149 -~~----~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 149 -DT----PEIRSALAELYLS------MGRLDEALAQYAKALEQAP------KDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp -CC----HHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHTC---------
T ss_pred -cc----hHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHccCHHHHHH
Confidence 22 4678899999999 9999999999999998632 234688899999999999999876
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.18 E-value=3.8e-09 Score=103.90 Aligned_cols=206 Identities=15% Similarity=-0.029 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
....++..+|..+...|++++|...++.+.+..|... ..+ ..++ ..+...|++++|...+.+++.+.+ +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~-~~l~---~~~~~~~~~~~A~~~~~~a~~~~~-----~ 74 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE--LAW-LVRA---EIYQYLKVNDKAQESFRQALSIKP-----D 74 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH-HHHH---HHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch--HHH-HHHH---HHHHHcCChHHHHHHHHHHHHhCC-----C
Confidence 4567889999999999999999999999998876431 111 1222 367889999999999999998633 1
Q ss_pred hhhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 554 MDLKTEASLRHARTLLAA-NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~-Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
...+...++.++... |++++|++.+++++. .+.......++..+|.++...|+++.|+..+.+++.....
T Consensus 75 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 145 (225)
T 2vq2_A 75 ---SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-- 145 (225)
T ss_dssp ---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--
T ss_pred ---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 245788999999999 999999999999886 2344566788999999999999999999999999887532
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
...+...+|.++...|+. ++|...+++++..... .+ ..++..++.++.. .|+.+.|..+++.+
T Consensus 146 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~------~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 146 ----FPPAFKELARTKMLAGQL--GDADYYFKKYQSRVEV-LQ----ADDLLLGWKIAKA------LGNAQAAYEYEAQL 208 (225)
T ss_dssp ----CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHCS-CC----HHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC-CC----HHHHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 246778899999999998 9999999999876430 12 2345677777777 89999999988888
Q ss_pred HHHH
Q 004081 713 SEEL 716 (775)
Q Consensus 713 l~~f 716 (775)
...+
T Consensus 209 ~~~~ 212 (225)
T 2vq2_A 209 QANF 212 (225)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7543
No 61
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.14 E-value=2.3e-09 Score=111.83 Aligned_cols=244 Identities=9% Similarity=-0.033 Sum_probs=181.8
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHH-
Q 004081 441 LRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKL- 519 (775)
Q Consensus 441 l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l- 519 (775)
..+.++...|...-+.-.-.-..... + +...++..+|..+...|++++|...++.+.+..|............
T Consensus 60 ~l~~~~~~~~~~~~A~~~~~~a~~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 60 SLGLTQAENEKDGLAIIALNHARMLD----P--KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC----c--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence 34555666676655543222112211 1 1246788999999999999999999999998877654432111000
Q ss_pred -------hhHHH-HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 004081 520 -------QLLHE-RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF 591 (775)
Q Consensus 520 -------~l~~~-~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~ 591 (775)
.+... .....|++.+|...+.++....+ + ...+...++.++...|++++|++.+++++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 202 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-----N---DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--- 202 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHST-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-----C---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---
Confidence 00001 25678999999999999988633 1 34678899999999999999999999998742
Q ss_pred ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 592 NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 592 gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
.....++..+|.++...|++++|+..+.+++.+... ...+...+|.++..+|+. ++|+..+++++....
T Consensus 203 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 203 ---PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQY--DLAAKQLVRAIYMQV 271 (327)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHT
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCC
Confidence 234678999999999999999999999999887532 245678899999999998 999999999998876
Q ss_pred hcCCHHH------HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 004081 672 GHGGLEL------RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 718 (775)
Q Consensus 672 ~~G~~~l------~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~ 718 (775)
..++... ...++..+|.++.. .|++++|...++++++.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 272 GGTTPTGEASREATRSMWDFFRMLLNV------MNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp TSCC-----CCTHHHHHHHHHHHHHHH------TTCHHHHHHHTTCCSHHHHH
T ss_pred ccccccccchhhcCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhcch
Confidence 6444433 57889999999999 99999999999999888764
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.10 E-value=2.2e-09 Score=108.65 Aligned_cols=190 Identities=12% Similarity=-0.027 Sum_probs=156.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|++.+|...+.+++.+.+ + ...++..++.++...|++++|++.+++++... .....++..
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~ 110 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDP-----S---SADAHAALAVVFQTEMEPKLADEEYRKALASD------SRNARVLNN 110 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC-----C---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHH
Confidence 467899999999999999988632 1 25688999999999999999999999998742 234678899
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
+|.++...|++++|+..+.+++. .+.......+...+|.++...|+. ++|...+++++..... ...++
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~~------~~~~~ 178 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKP--AQAKEYFEKSLRLNRN------QPSVA 178 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCSC------CHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCcc------cHHHH
Confidence 99999999999999999999887 333445667888899999999998 9999999999876422 25678
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 751 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~ 751 (775)
..+|.++.. .|++++|+.+++++++... ...+++..++.++...|+.++|.++...
T Consensus 179 ~~la~~~~~------~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 179 LEMADLLYK------EREYVPARQYYDLFAQGGG------QNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHTTSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 899999999 9999999999999876432 2345788999999999999998874433
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.09 E-value=4.5e-09 Score=101.62 Aligned_cols=167 Identities=14% Similarity=0.041 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
...++.+||..+..+|+|++|+..++++.+.-|.... ....++ ..+...|++++|...+.++....+ +
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la---~~~~~~~~~~~a~~~~~~~~~~~~-----~- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE---TLLKLG---KTYMDIGLPNDAIESLKKFVVLDT-----T- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHH---HHHHHTTCHHHHHHHHHHHHHHCC-----C-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHH---HHHHHCCCHHHHHHHHHHHHhcCc-----h-
Confidence 3578899999999999999999999999988764322 122232 367889999999999999988633 2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
...+....+.++...++++.|.+.+.+++... .....++..+|.++...|++++|+..+.+++.+..
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p----- 138 (184)
T 3vtx_A 72 --SAEAYYILGSANFMIDEKQAAIDALQRAIALN------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP----- 138 (184)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-----
Confidence 35678889999999999999999999988632 33467889999999999999999999999998753
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
..+.+...+|.++..+|+. ++|+..+++++..
T Consensus 139 -~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 -GFIRAYQSIGLAYEGKGLR--DEAVKYFKKALEK 170 (184)
T ss_dssp -TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHT
T ss_pred -hhhhHHHHHHHHHHHCCCH--HHHHHHHHHHHhC
Confidence 2357888999999999998 9999999999865
No 64
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.08 E-value=1e-06 Score=99.35 Aligned_cols=220 Identities=14% Similarity=0.060 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHh----cCCHHHHHHHHHHHhhhhhc
Q 004081 477 LAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMASS 548 (775)
Q Consensus 477 ~al~~LA~~la~----~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~L~~~ 548 (775)
.+..+||..+.. .+++++|...++.+.+. ++.. ....++ ..+.. .+++.+|..++.++...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~-a~~~lg---~~y~~g~g~~~~~~~A~~~~~~a~~~--- 252 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDEL-GQLHLA---DMYYFGIGVTQDYTQSRVLFSQSAEQ--- 252 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH-HHHHHH---HHHHHTSSSCCCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHH-HHHHHH---HHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 456666666665 67777777777766643 1111 111222 12333 67777777777776652
Q ss_pred CCCCChhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc-----CChhhHHH
Q 004081 549 VTGVDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-----GNAVLGIP 619 (775)
Q Consensus 549 ~~~~D~~~~~~a~~~~a~ll~~----~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~-----G~~~~Al~ 619 (775)
+ ...+.+.++.++.. .+++++|++++++++. .+...++..+|.++... +++++|+.
T Consensus 253 -~------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~--------~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 253 -G------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE--------QGNSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp -T------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred -C------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 1 23456667777776 7777777777777654 12345667777777766 77777777
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCC
Q 004081 620 YALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSV 698 (775)
Q Consensus 620 ~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~-~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~ 698 (775)
.+.+|++. ++ ..+...||.++...|.. .+++|+..++.++.. |+ ..+++.||.++..+. +.
T Consensus 318 ~~~~a~~~----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~--g~ 379 (490)
T 2xm6_A 318 WYTKSAEQ----GD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GE----KAAQFNLGNALLQGK--GV 379 (490)
T ss_dssp HHHHHHHT----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTS--SS
T ss_pred HHHHHHhc----CC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC--CC
Confidence 77776653 22 34566677777665521 236777777777654 33 456677777766522 23
Q ss_pred CCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHh----cCCHHHHHHH
Q 004081 699 SQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK----LGRLAEREEA 748 (775)
Q Consensus 699 ~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~----lGd~~~A~~a 748 (775)
.+++.+|+.++++|.+. + ..++++.+|.+|.. .+|.++|.++
T Consensus 380 ~~~~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQ----G----LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 56677777777777652 2 24567777777776 6777776653
No 65
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.07 E-value=7.2e-09 Score=114.60 Aligned_cols=237 Identities=9% Similarity=-0.075 Sum_probs=178.9
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCC-HHHHHHHHHHHhhhhhcCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH-LKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~-~~~A~~~l~~ll~L~~~~~ 550 (775)
..+...++.+++.++...|+|++|+..++++.++-|... ..|... + ......|+ +.+|...+++++.+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~--~a~~~~-g---~~l~~~g~d~~eAl~~~~~al~l~P--- 163 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY--TVWHFR-R---VLLKSLQKDLHEEMNYITAIIEEQP--- 163 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH--HHHHHH-H---HHHHHTTCCHHHHHHHHHHHHHHCT---
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH--HHHHHH-H---HHHHHcccCHHHHHHHHHHHHHHCC---
Confidence 346678899999999999999999999999998876422 233322 2 25677896 9999999999999733
Q ss_pred CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 551 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 551 ~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
. ...++++++.++...|++++|+..+++++.+ ......++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 164 ----~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 164 ----K-NYQVWHHRRVLVEWLRDPSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp ----T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred ----C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 2 3568999999999999999999999999973 3445789999999999999999999999999998542
Q ss_pred hCCcHHHHHHHHHHHHHHHH-cCCChHHHH-----HHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCC--Ch
Q 004081 631 LNLDLLKASATLTLAELWLS-FGPNHAKMA-----SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ--NP 702 (775)
Q Consensus 631 ~g~~~~~A~al~~La~l~l~-lG~~~f~~A-----l~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g--~~ 702 (775)
...+...+|.++.. .|.. ++| +..++.++.+--.. ..+++.+|.++.. .| ++
T Consensus 233 ------~~~a~~~lg~~l~~l~~~~--~eA~~~~el~~~~~Al~l~P~~------~~a~~~l~~ll~~------~g~~~~ 292 (382)
T 2h6f_A 233 ------NNSVWNQRYFVISNTTGYN--DRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGILQD------RGLSKY 292 (382)
T ss_dssp ------CHHHHHHHHHHHHHTTCSC--SHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTT------TCGGGC
T ss_pred ------CHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHc------cCccch
Confidence 25778889999999 6665 566 57788887654222 3578888888877 56 57
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCH-----HH-HHHHHHHHHHH
Q 004081 703 EAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL-----AE-REEAAALFKEY 755 (775)
Q Consensus 703 ~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~-----~~-A~~aAa~f~ql 755 (775)
.+|++.++++ .....-..++..+|.+|...|+. .. -++|...|+++
T Consensus 293 ~~a~~~~~~~-------~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 293 PNLLNQLLDL-------QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHH-------TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 7887777654 11122346777888888887622 22 24455566665
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=3.7e-09 Score=126.23 Aligned_cols=170 Identities=18% Similarity=0.048 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
+.+.++.+||..+..+|+|++|...++++.+..|.... ....++ ..+...|++++|...+++++.+.+ +
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---a~~nLg---~~l~~~g~~~eA~~~~~~Al~l~P-----~ 75 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---AHSNLA---SVLQQQGKLQEALMHYKEAIRISP-----T 75 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHH---HHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHH---HHHHHcCCHHHHHHHHHHHHHhCC-----C
Confidence 45789999999999999999999999999998764322 222333 367899999999999999999733 2
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
...+++++|.++..+|++++|++.+++++++ ....+.++..+|.++...|++++|+..+.+|+++.-.
T Consensus 76 ---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--- 143 (723)
T 4gyw_A 76 ---FADAYSNMGNTLKEMQDVQGALQCYTRAIQI------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--- 143 (723)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 3678999999999999999999999999974 2345789999999999999999999999999988532
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
.+.++..||.++..+|+. ++|.+.+++++.+..
T Consensus 144 ---~~~a~~~L~~~l~~~g~~--~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 144 ---FPDAYCNLAHCLQIVCDW--TDYDERMKKLVSIVA 176 (723)
T ss_dssp ---CHHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHH
T ss_pred ---ChHHHhhhhhHHHhcccH--HHHHHHHHHHHHhCh
Confidence 257888999999999999 899999998877654
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.06 E-value=1.2e-08 Score=100.34 Aligned_cols=190 Identities=12% Similarity=-0.010 Sum_probs=154.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|++++|...+.+++.+.+ + ...+...++.++...|++++|++.+++++... .....++..
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~ 81 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDP-----K---NELAWLVRAEIYQYLKVNDKAQESFRQALSIK------PDSAEINNN 81 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCc-----c---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCChHHHHH
Confidence 467889999999999999998633 1 24678899999999999999999999998742 224668899
Q ss_pred HHHHHHhc-CChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHH
Q 004081 604 LAEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 682 (775)
Q Consensus 604 lA~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a 682 (775)
+|.++... |++++|+..+.+++. .........+...+|.++...|+. ++|+..+++++..... ...+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~ 149 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQF--GLAEAYLKRSLAAQPQ------FPPA 149 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHSTT------CHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC------CchH
Confidence 99999999 999999999999987 233334567778899999999998 9999999999876422 2467
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004081 683 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 750 (775)
Q Consensus 683 ~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa 750 (775)
+..+|.++.. .|++.+|+.+++++++... .....++..++.++...|+.+.+..+..
T Consensus 150 ~~~la~~~~~------~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 150 FKELARTKML------AGQLGDADYYFKKYQSRVE-----VLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHH------HTCHHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8899999999 9999999999999988642 0123356788899999999998877443
No 68
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.02 E-value=6.1e-08 Score=99.92 Aligned_cols=194 Identities=10% Similarity=-0.004 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHh----cCCHHHHHHHHHHHhhhhh
Q 004081 476 ALAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMAS 547 (775)
Q Consensus 476 a~al~~LA~~la~----~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~L~~ 547 (775)
..++.++|..+.. .|++++|...++.+.+.- +.. ....++ ..+.. .|++.+|...++++..+
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~-a~~~lg---~~~~~g~~~~~~~~~A~~~~~~a~~~-- 107 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSN-GCHLLG---NLYYSGQGVSQNTNKALQYYSKACDL-- 107 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH-HHHHHH---HHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHH-HHHHHH---HHHhCCCCcccCHHHHHHHHHHHHHc--
Confidence 3678999999999 999999999999988652 222 112232 25667 99999999999999874
Q ss_pred cCCCCChhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh----cCChhhHHH
Q 004081 548 SVTGVDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK----SGNAVLGIP 619 (775)
Q Consensus 548 ~~~~~D~~~~~~a~~~~a~ll~~----~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~----~G~~~~Al~ 619 (775)
+ ...+...++.++.. .|++++|++.+++++.. + ...++..+|.++.. .+++++|+.
T Consensus 108 --~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 108 --K------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp --T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred --C------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 2 34688999999999 99999999999999862 2 46788899999998 999999999
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 004081 620 YALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 695 (775)
Q Consensus 620 ~l~~AL~la~~~g~~~~~A~al~~La~l~l~----lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~ 695 (775)
.+.++++. +. ..+...||.++.. .|+. ++|+..++.++.. ++ ..++..+|.++..+
T Consensus 172 ~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~--~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g-- 231 (273)
T 1ouv_A 172 SYDKACDL----KD----SPGCFNAGNMYHHGEGATKNF--KEALARYSKACEL----EN----GGGCFNLGAMQYNG-- 231 (273)
T ss_dssp HHHHHHHT----TC----HHHHHHHHHHHHHTCSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHTT--
T ss_pred HHHHHHHC----CC----HHHHHHHHHHHHcCCCCCccH--HHHHHHHHHHHhC----CC----HHHHHHHHHHHHcC--
Confidence 99999876 22 4677889999999 8887 9999999998765 44 56888999998873
Q ss_pred CCCCCChHHHHHHHHHHHHH
Q 004081 696 FSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 696 ~~~~g~~~~Al~~L~~Al~~ 715 (775)
.+..+++.+|+.++++|.+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHc
Confidence 23468899999999999764
No 69
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.02 E-value=4.1e-08 Score=103.96 Aligned_cols=223 Identities=16% Similarity=0.100 Sum_probs=162.0
Q ss_pred CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC
Q 004081 471 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 471 ~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~ 550 (775)
+++....+..-++..+..+|+|++|+..++. ........+.. +.......|++++|.+.+++++.. ..
T Consensus 29 ~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~--la~~~~~~~~~~~A~~~l~~ll~~--~~- 96 (291)
T 3mkr_A 29 SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRM--FAEYLASHSRRDAIVAELDREMSR--SV- 96 (291)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHH--HHHHHHCSTTHHHHHHHHHHHHHS--CC-
T ss_pred CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHH--HHHHHcCCCcHHHHHHHHHHHHhc--cc-
Confidence 3444455667778899999999999886643 12222222221 114567788999999999998762 11
Q ss_pred CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 551 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 551 ~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
+|. ...+++.+|.++...|++++|++.+++ .....++..+|.++.+.|+++.|+..+.+++.+..
T Consensus 97 --~P~-~~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p- 161 (291)
T 3mkr_A 97 --DVT-NTTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE- 161 (291)
T ss_dssp --CCS-CHHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred --CCC-CHHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-
Confidence 122 246789999999999999999999876 24467888999999999999999999999988742
Q ss_pred hCCcHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004081 631 LNLDLLKASATLTLAELWLS--FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 708 (775)
Q Consensus 631 ~g~~~~~A~al~~La~l~l~--lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~ 708 (775)
+. ....++..|.. .|...+++|+.++++++... ++ .+.+++.+|.++.. .|++++|+..
T Consensus 162 --~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---p~---~~~~~~~la~~~~~------~g~~~eA~~~ 222 (291)
T 3mkr_A 162 --DA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---SP---TLLLLNGQAACHMA------QGRWEAAEGV 222 (291)
T ss_dssp --TC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---CC---CHHHHHHHHHHHHH------TTCHHHHHHH
T ss_pred --Cc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---CC---cHHHHHHHHHHHHH------cCCHHHHHHH
Confidence 11 12233333322 23334599999999998762 32 36688999999999 9999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHH
Q 004081 709 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 709 L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A 745 (775)
+++|++.. ..-.+++..++.++...|+..++
T Consensus 223 l~~al~~~------p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 223 LQEALDKD------SGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcCCCHHH
Confidence 99999754 23456788999999999998653
No 70
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.01 E-value=4.8e-09 Score=104.92 Aligned_cols=187 Identities=14% Similarity=0.068 Sum_probs=145.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|++++|...+.+++...+ + ...+...++.++...|++++|++.+++++... .....++..
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~ 96 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENK-----E---DAIPYINFANLLSSVNELERALAFYDKALELD------SSAATAYYG 96 (243)
T ss_dssp -----------CCTTHHHHHTTCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCc-----c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CcchHHHHH
Confidence 367889999999999999988522 1 25688899999999999999999999998742 234788899
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
+|.++...|+++.|+..+.+++.+.... ..+...+|.++...|+. ++|+..+++++..... ...++
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~ 162 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQP--KLALPYLQRAVELNEN------DTEAR 162 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCH--HHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCCc------cHHHH
Confidence 9999999999999999999998875321 45678899999999998 9999999999876432 24578
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 750 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa 750 (775)
..+|.++.. .|++++|+.++++++.... ....++..+|.++...|+.++|.++..
T Consensus 163 ~~l~~~~~~------~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 163 FQFGMCLAN------EGMLDEALSQFAAVTEQDP------GHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHH------HTCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 899999999 9999999999999987642 224588999999999999999887443
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.00 E-value=1.9e-08 Score=102.48 Aligned_cols=205 Identities=10% Similarity=-0.059 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
.....++..+|..+...|+|++|...++.+.+..|... ..+ ..++ ..+...|++++|...+.+++.+.+.
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~-~~la---~~~~~~~~~~~A~~~~~~al~~~~~---- 109 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVF-NYLG---IYLTQAGNFDAAYEAFDSVLELDPT---- 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHH-HHHH---HHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHH-HHHH---HHHHHccCHHHHHHHHHHHHhcCcc----
Confidence 34566677777777777777777777777766654311 111 1122 2456677777777777777665221
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
...++..++.++...|++++|++.+++++..... .. ......+ +....|+++.|+..+.+++.......
T Consensus 110 ----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~--~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (275)
T 1xnf_A 110 ----YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN----DP--FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQ 178 (275)
T ss_dssp ----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH--HHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred ----ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----Ch--HHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcch
Confidence 1345666777777777777777777776653211 11 1111122 22445677777777766665432211
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
. ...++.++...+.. ++|+..++.++...... ....+.++..+|.++.. .|++++|+.++++|
T Consensus 179 ------~-~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 179 ------W-GWNIVEFYLGNISE--QTLMERLKADATDNTSL--AEHLSETNFYLGKYYLS------LGDLDSATALFKLA 241 (275)
T ss_dssp ------T-HHHHHHHHTTSSCH--HHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred ------H-HHHHHHHHHHhcCH--HHHHHHHHHHhcccccc--cccccHHHHHHHHHHHH------cCCHHHHHHHHHHH
Confidence 0 12244444444443 66777776665544321 11235666777777777 77777777777777
Q ss_pred HHH
Q 004081 713 SEE 715 (775)
Q Consensus 713 l~~ 715 (775)
+..
T Consensus 242 l~~ 244 (275)
T 1xnf_A 242 VAN 244 (275)
T ss_dssp HTT
T ss_pred HhC
Confidence 654
No 72
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.00 E-value=3e-08 Score=110.13 Aligned_cols=214 Identities=15% Similarity=0.026 Sum_probs=140.4
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH-----HHH-HHHhhHHHHHHhcCCHHHHHHHHHHHhhh
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-----ILL-LKLQLLHERSLHRGHLKLAQKVCDELGVM 545 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~-----~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~L 545 (775)
.+..+.++..||.++..+|+|++|+..+++|.++++...... ... ..++ ..+...|++.+|...+++++.+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla---~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYA---WVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHH---HHHHHcCChHHHHHHHHHHHHH
Confidence 334467889999999999999999999999999877654321 111 1233 4788999999999999999998
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH---HhcCChhhHHHH
Q 004081 546 ASSVTGVDMDLKTEASLRHARTLLAA--NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH---KKSGNAVLGIPY 620 (775)
Q Consensus 546 ~~~~~~~D~~~~~~a~~~~a~ll~~~--Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~---~~~G~~~~Al~~ 620 (775)
.+..........+.+...++..++.. ++|++|++.+++++... +....++..++.++ ...|++..|+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~------p~~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK------PKNPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 76544322222456677777776655 57999999999999742 22344555555553 456788889999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCC
Q 004081 621 ALASLSFCQLLNLDLLKASATLTLAELWLSF----GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 696 (775)
Q Consensus 621 l~~AL~la~~~g~~~~~A~al~~La~l~l~l----G~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~ 696 (775)
+.+|+.+... + ..+...+|..+..+ |.. ++|..++++++..-- ....++..+|.++..
T Consensus 198 ~~~al~l~p~--~----~~~~~~l~~~~~~~~~~~~~~--~~a~~~~~~al~~~~------~~~~~~~~lg~~~~~---- 259 (472)
T 4g1t_A 198 LRQAIRLNPD--N----QYLKVLLALKLHKMREEGEEE--GEGEKLVEEALEKAP------GVTDVLRSAAKFYRR---- 259 (472)
T ss_dssp HHHHHHHCSS--C----HHHHHHHHHHHHHCC--------CHHHHHHHHHHHHCS------SCHHHHHHHHHHHHH----
T ss_pred HHHHhhcCCc--c----hHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHhCc------cHHHHHHHHHHHHHH----
Confidence 9888876321 1 22333344443333 344 667777777665421 123456667777777
Q ss_pred CCCCChHHHHHHHHHHHH
Q 004081 697 SVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 697 ~~~g~~~~Al~~L~~Al~ 714 (775)
.|++.+|+..+++|++
T Consensus 260 --~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 260 --KDEPDKAIELLKKALE 275 (472)
T ss_dssp --TTCHHHHHHHHHHHHH
T ss_pred --cCchHHHHHHHHHHHH
Confidence 7777777777777665
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.99 E-value=3e-09 Score=120.60 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=173.0
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCH-HHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHL-KLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 567 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~-~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~l 567 (775)
..++++++..++......+ .....+. .++ ..+...|+| ++|...+++++.+.+ . ...+++.+|.+
T Consensus 81 ~~~~~~al~~l~~~~~~~~--~~a~~~~-~lg---~~~~~~g~~~~~A~~~~~~al~~~p-------~-~~~a~~~lg~~ 146 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQ--VEAQALM-LKG---KALNVTPDYSPEAEVLLSKAVKLEP-------E-LVEAWNQLGEV 146 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CCHHHHH-HHH---HHHTSSSSCCHHHHHHHHHHHHHCT-------T-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCc--hhHHHHH-HHH---HHHHhccccHHHHHHHHHHHHhhCC-------C-CHHHHHHHHHH
Confidence 3456677777665443222 1112222 222 367889999 999999999999733 1 35689999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc---------CChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 568 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS---------GNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 568 l~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~---------G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
+...|++++|++.+++++.. ++. ..++..+|.++... |++++|+..+.+|+.+... .+
T Consensus 147 ~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~ 213 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALTH-----CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DG 213 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHTT-----CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHcCCHHHHHHHHHHHHhh-----CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CH
Confidence 99999999999999999873 233 58999999999999 9999999999999998532 24
Q ss_pred HHHHHHHHHHHHc--------CCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004081 639 SATLTLAELWLSF--------GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 710 (775)
Q Consensus 639 ~al~~La~l~l~l--------G~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~ 710 (775)
.+...||.++..+ |+. ++|+..+++++..--. ....+.+++.+|.++.. .|++++|+.+++
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~ 282 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKIS--QQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKY------EESYGEALEGFS 282 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchH--HHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHH------cCCHHHHHHHHH
Confidence 6778899999888 776 9999999999887321 11456789999999999 999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHHHHhhhc
Q 004081 711 QASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE-----AAALFKEYVLALE 760 (775)
Q Consensus 711 ~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~-----aAa~f~ql~~~~~ 760 (775)
+|++..-. -.+++..++.++..+|+.++|.+ -...+..+...+.
T Consensus 283 ~al~l~p~------~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~~~l~~~~~~l~ 331 (474)
T 4abn_A 283 QAAALDPA------WPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLR 331 (474)
T ss_dssp HHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCC
T ss_pred HHHHhCCC------CHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHhch
Confidence 99986532 24678889999999998888754 2234445555544
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.97 E-value=1.6e-08 Score=97.76 Aligned_cols=158 Identities=12% Similarity=0.141 Sum_probs=134.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..+..+|+|++|...+++++.+.+ . -..++..++.++...|++++|+..+..++.. ......++..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p-------~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 78 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADP-------N-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL------DTTSAEAYYI 78 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CchhHHHHHH
Confidence 478899999999999999999732 2 3568999999999999999999999988763 2334778889
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
+|.++...+++..|...+.+++.+... ...+...+|.++..+|+. ++|+..+++++..-- ..+.++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~~l~~~p------~~~~~~ 144 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEH--DKAIEAYEKTISIKP------GFIRAY 144 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCc--hhHHHHHHHHHHhcc------hhhhHH
Confidence 999999999999999999999877532 245678899999999998 999999999987632 235689
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
..+|.++.. .|++++|+.++++|++.
T Consensus 145 ~~lg~~~~~------~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 145 QSIGLAYEG------KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH------CCCHHHHHHHHHHHHhC
Confidence 999999999 99999999999999875
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=4.4e-08 Score=100.58 Aligned_cols=198 Identities=9% Similarity=-0.054 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++..+|..+...|+|++|...++.+.+..|...........++ ..++..|+|.+|...+++++.+.+. + .
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg---~~~~~~~~~~~A~~~~~~~l~~~p~----~-~ 86 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLA---RAYYQNKEYLLAASEYERFIQIYQI----D-P 86 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHCTT----C-T
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH---HHHHHhCcHHHHHHHHHHHHHHCCC----C-c
Confidence 577899999999999999999999999988875543222222333 3688999999999999999997552 1 1
Q ss_pred hHHHHHHHHHHHHHH--------cCChHHHHHHHHHHHHHHhhcccchhHHHHH--------------HHHHHHHHhcCC
Q 004081 556 LKTEASLRHARTLLA--------ANQFSEAAAVAHSLFCMCYKFNLQVENASVL--------------LLLAEIHKKSGN 613 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~--------~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aL--------------l~lA~i~~~~G~ 613 (775)
....+++.++.++.. .|++++|+..+++++..... ......++ ..+|.++...|+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN---HELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 256889999999999 99999999999999875432 11222233 889999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 614 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF----------GPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 614 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~l----------G~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
+..|+..+.+++.... .......++..+|.++..+ |+. ++|+..++.++... .+-.....+.
T Consensus 164 ~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~--~~A~~~~~~~~~~~---p~~~~~~~a~ 235 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVRARQPERY--RRAVELYERLLQIF---PDSPLLRTAE 235 (261)
T ss_dssp HHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHHC---TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchhhcccchH--HHHHHHHHHHHHHC---CCChHHHHHH
Confidence 9999999999987643 2233567888899999887 655 99999999987654 2322333455
Q ss_pred HHHHHhhhc
Q 004081 684 IAEAKCLLS 692 (775)
Q Consensus 684 ~~LAr~~lA 692 (775)
..+++++..
T Consensus 236 ~~l~~~~~~ 244 (261)
T 3qky_A 236 ELYTRARQR 244 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=1.3e-08 Score=104.44 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=152.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.++..|+|.+|...+.+++...+ +......+++.+|.++...|+|++|++.+++++.... +......++..+
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l 95 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGR-----THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---IDPRVPQAEYER 95 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCS-----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---CCchhHHHHHHH
Confidence 67899999999999999998644 2223478999999999999999999999999997432 223457889999
Q ss_pred HHHHHh--------cCChhhHHHHHHHHHHHHHHhCCcHHHHHHH--------------HHHHHHHHHcCCChHHHHHHH
Q 004081 605 AEIHKK--------SGNAVLGIPYALASLSFCQLLNLDLLKASAT--------------LTLAELWLSFGPNHAKMASNL 662 (775)
Q Consensus 605 A~i~~~--------~G~~~~Al~~l~~AL~la~~~g~~~~~A~al--------------~~La~l~l~lG~~~f~~Al~l 662 (775)
|.++.. .|++..|+..+.+++...-... ....++ ..+|.++...|+. ++|+..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~ 170 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE---LVDDATQKIRELRAKLARKQYEAARLYERRELY--EAAAVT 170 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHH
Confidence 999999 9999999999999988753322 222233 7799999999998 999999
Q ss_pred HHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCC----CCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHh
Q 004081 663 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSF----SVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK 738 (775)
Q Consensus 663 Le~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~----~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~ 738 (775)
++.++...- +......+++.+|.++...... ...|++++|+..++++++.+ .+.....++...++.++..
T Consensus 171 ~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 171 YEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---PDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHH
Confidence 999986542 2223456777778777751000 01278899999999998766 4445567777788888777
Q ss_pred cCCHHH
Q 004081 739 LGRLAE 744 (775)
Q Consensus 739 lGd~~~ 744 (775)
+|..+.
T Consensus 245 ~~~~~~ 250 (261)
T 3qky_A 245 LTELEG 250 (261)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 766543
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.95 E-value=3.6e-09 Score=119.93 Aligned_cols=187 Identities=14% Similarity=-0.042 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGY-KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y-~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
..+.++..+|..+...|+| ++|...++++.+..|.... .| ..++ ..++..|++++|...+++++.+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~--a~-~~lg---~~~~~~g~~~~A~~~~~~al~~------- 166 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE--AW-NQLG---EVYWKKGDVTSAHTCFSGALTH------- 166 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH--HH-HHHH---HHHHHHTCHHHHHHHHHHHHTT-------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH--HH-HHHH---HHHHHcCCHHHHHHHHHHHHhh-------
Confidence 3467889999999999999 9999999999988764322 11 1222 3678899999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc--------CChh
Q 004081 553 DMDLKTEASLRHARTLLAA---------NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS--------GNAV 615 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~---------Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~--------G~~~ 615 (775)
+|. ..++..++.++... |++++|++.+++++... .....++..+|.++... |+++
T Consensus 167 ~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 167 CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD------VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 444 37899999999999 99999999999999742 33467899999999999 9999
Q ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 616 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 616 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
+|+..+.+|+.+... ....+.+...+|.++..+|+. ++|+..+++++..--.. ..++..++.++..
T Consensus 239 ~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~------~~a~~~l~~~~~~ 304 (474)
T 4abn_A 239 QALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESY--GEALEGFSQAAALDPAW------PEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 999999999998421 114467889999999999998 99999999998764322 3566777777666
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.92 E-value=2.6e-08 Score=94.38 Aligned_cols=172 Identities=13% Similarity=-0.014 Sum_probs=138.2
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
.+....++..+|..+...|++++|...++.+.+..|.. ... ...++ ..+...|++.+|...+.++..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~-~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~---- 73 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD--VDV-ALHLG---IAYVKTGAVDRGTELLERSLADAP---- 73 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC--HHH-HHHHH---HHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC--hHH-HHHHH---HHHHHcCCHHHHHHHHHHHHhcCC----
Confidence 34567888999999999999999999999887665432 111 11222 367889999999999999988632
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
+ ...+...++.++...|++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.....
T Consensus 74 -~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 142 (186)
T 3as5_A 74 -D---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN- 142 (186)
T ss_dssp -T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -C---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-
Confidence 1 24678899999999999999999999998742 224678899999999999999999999999887532
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
...+...+|.++...|+. ++|...++.++...-
T Consensus 143 -----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 143 -----EGKVHRAIAFSYEQMGRH--EEALPHFKKANELDE 175 (186)
T ss_dssp -----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCC
Confidence 146778899999999998 999999999987653
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.91 E-value=1.9e-08 Score=120.20 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=139.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..+..+|++++|...+++++.+.+ + ...+++++|.++..+|++++|++.+++++++ ....+.++..
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P-----~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~n 82 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFP-----E---FAAAHSNLASVLQQQGKLQEALMHYKEAIRI------SPTFADAYSN 82 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 378899999999999999999733 2 3578999999999999999999999999974 2345789999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
+|.++...|++++|+..+.+|+++.-. .+.++..||.++..+|+. ++|++.+++++.+--. -+.++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~--~eAi~~~~~Al~l~P~------~~~a~ 148 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNI--PEAIASYRTALKLKPD------FPDAY 148 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCSC------CHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC------ChHHH
Confidence 999999999999999999999988532 367889999999999998 9999999999876321 25688
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 718 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~ 718 (775)
..||.++.. .|++++|++.+++++++...
T Consensus 149 ~~L~~~l~~------~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 149 CNLAHCLQI------VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHH------TTCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhHHHh------cccHHHHHHHHHHHHHhChh
Confidence 999999999 99999999999999987653
No 80
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.90 E-value=6.4e-08 Score=98.55 Aligned_cols=222 Identities=14% Similarity=-0.018 Sum_probs=158.4
Q ss_pred HhcCHHHHHHHHHHHHHHhhhcCchHHHH-HHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHH
Q 004081 488 VFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 566 (775)
Q Consensus 488 ~~G~y~eAl~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ 566 (775)
..|+|++|+..++++.+..+......... ..++ ..+...|++++|...+.+++.+.+ + ...++..+|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~al~~~~-----~---~~~~~~~la~ 85 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERG---VLYDSLGLRALARNDFSQALAIRP-----D---MPEVFNYLGI 85 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHH---HHHHHcccHHHHHHHHHHHHHcCC-----C---cHHHHHHHHH
Confidence 46889999999999988743221112111 2232 367889999999999999988633 1 2457888999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 004081 567 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 646 (775)
Q Consensus 567 ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 646 (775)
++...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+..... .... +..
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~-~~~ 152 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELD------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------FRSL-WLY 152 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHH-HHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh------HHHH-HHH
Confidence 9999999999999999988742 22357888999999999999999999999988653221 1122 222
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHH
Q 004081 647 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAA 726 (775)
Q Consensus 647 l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~ 726 (775)
+....|+. ++|+..++.++......... ..++.+++. .+...+|+..+++++...... .....
T Consensus 153 ~~~~~~~~--~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~------~~~~~~a~~~~~~~~~~~~~~--~~~~~ 215 (275)
T 1xnf_A 153 LAEQKLDE--KQAKEVLKQHFEKSDKEQWG-------WNIVEFYLG------NISEQTLMERLKADATDNTSL--AEHLS 215 (275)
T ss_dssp HHHHHHCH--HHHHHHHHHHHHHSCCCSTH-------HHHHHHHTT------SSCHHHHHHHHHHHCCSHHHH--HHHHH
T ss_pred HHHHhcCH--HHHHHHHHHHHhcCCcchHH-------HHHHHHHHH------hcCHHHHHHHHHHHhcccccc--ccccc
Confidence 33556877 99999998888765433221 235555666 677788999999988766542 33446
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 004081 727 EAFYLIAIVFDKLGRLAEREEAAA 750 (775)
Q Consensus 727 evl~~LA~l~~~lGd~~~A~~aAa 750 (775)
.++..+|.+|...|+.++|.++..
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788999999999999999876443
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.87 E-value=8e-08 Score=96.24 Aligned_cols=161 Identities=12% Similarity=-0.074 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.++.++|..+...|+|++|...++.+.+..|.. +...+.. ++ ..+...|++++|...+.+++.+.+ +
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~-~~---~~~~~~~~~~~A~~~~~~al~~~p-----~--- 74 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYN-CG---VCADNIKKYKEAADYFDIAIKKNY-----N--- 74 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHH-HH---HHHHHTTCHHHHHHHHHHHHHTTC-----S---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHH-HH---HHHHHhhcHHHHHHHHHHHHHhCc-----c---
Confidence 678999999999999999999999999887621 2221211 22 367899999999999999998632 2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd-~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
...++..+|.++...|++++|++.+++++........ ....+.++..+|.++...|++++|+..+.+++.+... .
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~ 150 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK----K 150 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----H
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----c
Confidence 5678999999999999999999999999975432111 1123478999999999999999999999999886321 1
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 004081 636 LKASATLTLAELWLSFGPN 654 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~ 654 (775)
..+.+...+|.++...|..
T Consensus 151 ~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 1367788889888877764
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.86 E-value=6.7e-08 Score=91.47 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=137.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
|+.....+...++..+...|++++|++.+++++.. ......++..+|.++...|++++|+..+.+++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--- 73 (186)
T 3as5_A 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--- 73 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---
Confidence 45567888999999999999999999999888752 223478899999999999999999999999988742
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
....+...+|.++...|+. ++|...+++++..... ...++..+|.++.. .|++++|+.+++++
T Consensus 74 ---~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~------~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 74 ---DNVKVATVLGLTYVQVQKY--DLAVPLLIKVAEANPI------NFNVRFRLGVALDN------LGRFDEAIDSFKIA 136 (186)
T ss_dssp ---TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCcH------hHHHHHHHHHHHHH------cCcHHHHHHHHHHH
Confidence 1246678899999999998 9999999999876422 24678899999999 99999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004081 713 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 751 (775)
Q Consensus 713 l~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~ 751 (775)
++... ....++..+|.++...|+.++|.++...
T Consensus 137 ~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 137 LGLRP------NEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCc------cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87642 1257889999999999999998874433
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=3.1e-08 Score=99.22 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=118.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|...+.+++.+.+. .| ..+.+.+|.++...|++++|++.+++++. .......++..
T Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~ 81 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYLKLTNN---QD----SVTAYNCGVCADNIKKYKEAADYFDIAIK------KNYNLANAYIG 81 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTT---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCSHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhccCC---CC----cHHHHHHHHHHHHhhcHHHHHHHHHHHHH------hCcchHHHHHH
Confidence 3688999999999999999987320 13 25677799999999999999999999986 23446889999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 682 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a 682 (775)
+|.++...|+++.|+..+.+++.+..... .....+.+...+|.++..+|+. ++|+..++.++..- .....+.+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~--~~A~~~~~~al~~~----p~~~~~~~ 155 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI--EKAEENYKHATDVT----SKKWKTDA 155 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHTTSS----CHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH--HHHHHHHHHHHhcC----CCcccHHH
Confidence 99999999999999999999998764221 1223456788899999999998 99999999998752 21113566
Q ss_pred HHHHHHhhhc
Q 004081 683 FIAEAKCLLS 692 (775)
Q Consensus 683 ~~~LAr~~lA 692 (775)
+..+|.++..
T Consensus 156 ~~~l~~~~~~ 165 (228)
T 4i17_A 156 LYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=2.1e-07 Score=93.81 Aligned_cols=179 Identities=14% Similarity=0.008 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++.++|..+...|+|++|...++.+.+.+|...........++ ..+...|+|.+|...+++++...+. ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg---~~~~~~~~~~~A~~~~~~~l~~~P~----~~- 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLI---YAYYKNADLPLAQAAIDRFIRLNPT----HP- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHCTT----CT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHCcC----CC-
Confidence 356788999999999999999999999998886544322222333 3678999999999999999997553 21
Q ss_pred hHHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHHHHhhcccchh-----------HHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLA------------------ANQFSEAAAVAHSLFCMCYKFNLQVE-----------NASVLLLLAE 606 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~------------------~Gd~~eAl~~l~~aL~~~~~~gd~~~-----------~a~aLl~lA~ 606 (775)
....+++.++.++.. .|++++|+..+++++........... .......+|.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677888887765 57999999999998864332111000 0122367899
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004081 607 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 667 (775)
Q Consensus 607 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aL 667 (775)
++...|++..|+..+.+++...- .......++..+|.++..+|+. ++|++.++.+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~--~~A~~~~~~l~ 211 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMN--AQAEKVAKIIA 211 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCc--HHHHHHHHHHH
Confidence 99999999999999999987753 2334567889999999999998 99999988664
No 85
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.80 E-value=9.6e-08 Score=101.07 Aligned_cols=213 Identities=10% Similarity=0.000 Sum_probs=152.9
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHH
Q 004081 486 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 565 (775)
Q Consensus 486 la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a 565 (775)
....|.|..|+..++.....-|. ...-... +..+.++..|++++|...++.. ++. ...+...++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~---~~~e~~~--~l~r~yi~~g~~~~al~~~~~~----------~~~-~~~a~~~la 72 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPE---RDVERDV--FLYRAYLAQRKYGVVLDEIKPS----------SAP-ELQAVRMFA 72 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHH---HHHHHHH--HHHHHHHHTTCHHHHHHHSCTT----------SCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCch---hhHHHHH--HHHHHHHHCCCHHHHHHHhccc----------CCh-hHHHHHHHH
Confidence 34689999999888754322221 1111111 1125789999999998754331 222 467888899
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 004081 566 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLA 645 (775)
Q Consensus 566 ~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La 645 (775)
.++...|++++|++.+++++. .+..+....++..+|.++...|++++|+..+.+ . ....+...+|
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~----~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~---~~~~~~~~l~ 137 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMS----RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------G---DSLECMAMTV 137 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHH----SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------C---CSHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHh----cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------C---CCHHHHHHHH
Confidence 999999999999999999886 122345678899999999999999999999877 1 2245677899
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHH
Q 004081 646 ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA 725 (775)
Q Consensus 646 ~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~ 725 (775)
.++..+|+. ++|...+++++..- .+. ........+..++.. .|++.+|+..++++++.+ . .-
T Consensus 138 ~~~~~~g~~--~~A~~~l~~~~~~~---p~~-~~~~l~~a~~~l~~~------~~~~~eA~~~~~~~l~~~---p---~~ 199 (291)
T 3mkr_A 138 QILLKLDRL--DLARKELKKMQDQD---EDA-TLTQLATAWVSLAAG------GEKLQDAYYIFQEMADKC---S---PT 199 (291)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHS---C---CC
T ss_pred HHHHHCCCH--HHHHHHHHHHHhhC---cCc-HHHHHHHHHHHHHhC------chHHHHHHHHHHHHHHhC---C---Cc
Confidence 999999998 99999999998763 221 111111112233334 688999999999999763 2 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH
Q 004081 726 AEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 726 ~evl~~LA~l~~~lGd~~~A~~ 747 (775)
..++..+|.++...|+.++|.+
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999987
No 86
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.76 E-value=3.9e-07 Score=100.66 Aligned_cols=218 Identities=9% Similarity=-0.049 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhhcCchHH
Q 004081 436 GSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKG-YKEAFSALKIAEEKFLSVSKSRI 514 (775)
Q Consensus 436 g~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~-y~eAl~~L~~a~~~f~~~~~~~~ 514 (775)
...+...+.+....|...-+--...-.+. ... +...++.++|.++...|+ |++|+..++++.+..|.. ...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~--~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE-LNA-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--YQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--HHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCc-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--HHH
Confidence 34455556666666655444332211111 111 225789999999999997 999999999999887642 223
Q ss_pred HHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccc
Q 004081 515 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 594 (775)
Q Consensus 515 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~ 594 (775)
|... + ..+...|++.+|...+++++.+.+ . -..++.+++.++...|++++|++.+++++.+ .
T Consensus 169 ~~~~-g---~~~~~~g~~~eAl~~~~kal~ldP-------~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l------~ 230 (382)
T 2h6f_A 169 WHHR-R---VLVEWLRDPSQELEFIADILNQDA-------K-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------D 230 (382)
T ss_dssp HHHH-H---HHHHHHTCCTTHHHHHHHHHHHCT-------T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------C
T ss_pred HHHH-H---HHHHHccCHHHHHHHHHHHHHhCc-------c-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------C
Confidence 3322 2 246677999999999999999733 2 3578999999999999999999999999973 3
Q ss_pred hhHHHHHHHHHHHHHh-cCChhhH-----HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004081 595 VENASVLLLLAEIHKK-SGNAVLG-----IPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP 668 (775)
Q Consensus 595 ~~~a~aLl~lA~i~~~-~G~~~~A-----l~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp 668 (775)
.....++..+|.++.. .|..++| +..+.+|+.+.-. ...+...++.++...|...+++|++.++++ .
T Consensus 231 P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~ 303 (382)
T 2h6f_A 231 VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH------NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q 303 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHccCccchHHHHHHHHHh-c
Confidence 4457889999999999 6665777 4788888887532 246788899999888842238999888775 2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 669 LILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 669 ~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
. .-. -..++..||.++..
T Consensus 304 ~--~p~----~~~al~~La~~~~~ 321 (382)
T 2h6f_A 304 P--SHS----SPYLIAFLVDIYED 321 (382)
T ss_dssp T--TCC----CHHHHHHHHHHHHH
T ss_pred c--CCC----CHHHHHHHHHHHHH
Confidence 1 112 24577788888776
No 87
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.75 E-value=2.3e-06 Score=96.53 Aligned_cols=220 Identities=10% Similarity=0.011 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHh----cCCHHHHHHHHHHHhhh
Q 004081 474 DAALAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVM 545 (775)
Q Consensus 474 ~~a~al~~LA~~la~----~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~L 545 (775)
+...+..+||..+.. .+++++|+..++.+.+. ++.. ....++ ..+.. .+++.+|..++.++...
T Consensus 145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~-a~~~Lg---~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVW-SCNQLG---YMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH-HHHHHH---HHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHH-HHHHHH---HHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 345677888888876 77888888888877654 2222 122232 24555 78888888888887763
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh----cCChhhH
Q 004081 546 ASSVTGVDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK----SGNAVLG 617 (775)
Q Consensus 546 ~~~~~~~D~~~~~~a~~~~a~ll~~----~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~----~G~~~~A 617 (775)
+ + ..+.+.++.++.. .+++++|++++++++. .+...++..+|.++.. .+++.+|
T Consensus 217 ----~--~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~y~~g~~~~~d~~~A 278 (490)
T 2xm6_A 217 ----G--D----ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE--------QGNSIAQFRLGYILEQGLAGAKEPLKA 278 (490)
T ss_dssp ----T--C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred ----C--C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHCCCCCCCCHHHH
Confidence 2 2 3567788888876 8888888888888765 2345678888888888 8888888
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 618 IPYALASLSFCQLLNLDLLKASATLTLAELWLSF-----GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 618 l~~l~~AL~la~~~g~~~~~A~al~~La~l~l~l-----G~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
+..+.+|++. ++ ..+...||.++... ++. ++|+..++.++.. |+ ..+++.||.++..
T Consensus 279 ~~~~~~a~~~----~~----~~a~~~Lg~~y~~~~~g~~~~~--~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 279 LEWYRKSAEQ----GN----SDGQYYLAHLYDKGAEGVAKNR--EQAISWYTKSAEQ----GD----ATAQANLGAIYFR 340 (490)
T ss_dssp HHHHHHHHTT----TC----HHHHHHHHHHHHHCBTTBCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCH--HHHHHHHHHHHhc----CC----HHHHHHHHHHHHh
Confidence 8888887643 22 45777888888776 565 8888888887653 44 3577888888887
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHh----cCCHHHHHHH
Q 004081 693 DPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK----LGRLAEREEA 748 (775)
Q Consensus 693 ~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~----lGd~~~A~~a 748 (775)
. +...++.+|+.++++|.+. ++ .++++.+|.+|.. .+++++|.++
T Consensus 341 ~---g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 341 L---GSEEEHKKAVEWFRKAAAK----GE----KAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp S---CCHHHHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred C---CCcccHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 1 1122678888888888753 33 5688889999988 7888877663
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.71 E-value=1.9e-07 Score=98.28 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
...+..+|..+...|++++|...++++.+..|..... ...++ ..++..|++++|...++++....+ +
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a---~~~la---~~~~~~g~~~~A~~~l~~~~~~~p-----~-- 183 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI---GLLLA---ETLIALNRSEDAEAVLXTIPLQDQ-----D-- 183 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH---HHHHH---HHHHHTTCHHHHHHHHTTSCGGGC-----S--
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH---HHHHH---HHHHHCCCHHHHHHHHHhCchhhc-----c--
Confidence 4567889999999999999999999999988753221 22222 368899999999999999877522 2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
........+..+...|++++|++.+++++.. .+....++..+|.++...|++++|+..+.+++.+....
T Consensus 184 -~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---- 252 (287)
T 3qou_A 184 -TRYQGLVAQIELLXQAADTPEIQQLQQQVAE------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---- 252 (287)
T ss_dssp -HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----
T ss_pred -hHHHHHHHHHHHHhhcccCccHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----
Confidence 3455666777788999999999999998862 34557899999999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
....++..|+.++..+|+. ++|...+++++..++
T Consensus 253 ~~~~a~~~l~~~~~~~g~~--~~a~~~~r~al~~~l 286 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTG--DALASXYRRQLYALL 286 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhh
Confidence 2357788999999999998 899999999987654
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=3.1e-07 Score=108.95 Aligned_cols=192 Identities=18% Similarity=0.132 Sum_probs=145.2
Q ss_pred HHhcCHHHHHHHHHHHH--------HHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHH
Q 004081 487 AVFKGYKEAFSALKIAE--------EKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 558 (775)
Q Consensus 487 a~~G~y~eAl~~L~~a~--------~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~ 558 (775)
...|++++|++.++++. +..|... ..+. .++ ..++..|++++|...+++++.+.+ + ..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~--~~~~-~~a---~~~~~~g~~~~A~~~~~~al~~~p-----~---~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESV--ELPL-MEV---RALLDLGDVAKATRKLDDLAERVG-----W---RW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCS--HHHH-HHH---HHHHHHTCHHHHHHHHHHHHHHHC-----C---CH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccch--hHHH-HHH---HHHHhcCCHHHHHHHHHHHhccCc-----c---hH
Confidence 56899999999999998 4333221 1222 222 367889999999999999998743 2 35
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
.+++.+|.++...|++++|++.+++++... .....++..+|.++...|++++ +..+.+|+.+.-. .+
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------~~ 534 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTF------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG------VI 534 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------hH
Confidence 789999999999999999999999999742 3347788999999999999999 9999999987532 24
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH-HHHHHHHHHHHH
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV-LDPLRQASEELQ 717 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~A-l~~L~~Al~~f~ 717 (775)
.+...+|.++..+|+. ++|+..+++++..- . .-+.++..+|.+++. .+.+.++ .+-+++|.+.+.
T Consensus 535 ~a~~~lg~~~~~~g~~--~~A~~~~~~al~l~----P--~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 535 SAAFGLARARSAEGDR--VGAVRTLDEVPPTS----R--HFTTARLTSAVTLLS------GRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHTSCTTS----T--THHHHHHHHHHHTC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHhhcccC----c--ccHHHHHHHHHHHHc------cCCCCCCCHHHHHHHHHHHh
Confidence 6788999999999998 99999999997653 2 235677888888877 4544444 567777777776
Q ss_pred hc
Q 004081 718 VL 719 (775)
Q Consensus 718 ~l 719 (775)
++
T Consensus 601 ~~ 602 (681)
T 2pzi_A 601 AL 602 (681)
T ss_dssp TS
T ss_pred hC
Confidence 66
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=8.9e-07 Score=89.16 Aligned_cols=173 Identities=11% Similarity=-0.034 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
..+++.+|..+...|+|++|++.+++++... ........++..+|.++...|++++|+..+.+++.+.-.. ...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~---~~~ 77 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---PNI 77 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---CcH
Confidence 4578899999999999999999999998732 2233456789999999999999999999999998765432 223
Q ss_pred HHHHHHHHHHHHH------------------cCCChHHHHHHHHHHHHhHHHhcCCHHH-----------HHHHHHHHHH
Q 004081 638 ASATLTLAELWLS------------------FGPNHAKMASNLIQQALPLILGHGGLEL-----------RARAFIAEAK 688 (775)
Q Consensus 638 A~al~~La~l~l~------------------lG~~~f~~Al~lLe~aLp~il~~G~~~l-----------~A~a~~~LAr 688 (775)
..++..+|.++.. .|.. ++|+..+++++...-.+..... .+.....+|.
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQA--RAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHH--HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHH--HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777665 3444 9999999999876544433221 1233367788
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 689 CLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 689 ~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
++.. .|++.+|+..++++++.+- ......++++.+|.+|..+|+.++|.+
T Consensus 156 ~~~~------~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 156 YYTE------RGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp HHHH------HTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH------cCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 8888 9999999999999998763 334566899999999999999999987
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.65 E-value=1.1e-07 Score=94.98 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=117.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR----------------HARTLLAANQFSEAAAVAHSLFCMC 588 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~----------------~a~ll~~~Gd~~eAl~~l~~aL~~~ 588 (775)
.++..|+|++|...+.+++.+ +|. ...+++. +|.++...|++++|+..+++++..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~-------~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL-------NID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------CCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 456667777777777777665 222 2334445 999999999999999999999974
Q ss_pred hhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004081 589 YKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP 668 (775)
Q Consensus 589 ~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp 668 (775)
.+....++..+|.++...|++++|+..+.+++.+.-. .+.+...||.++...|..+...+...++.++.
T Consensus 84 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 84 -----APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD------NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 2344788999999999999999999999999998532 25678889999887776533555555555432
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 004081 669 LILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 669 ~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~ 717 (775)
.+.. ..+++.+|.++.. .|++.+|+.++++|++.+-
T Consensus 153 -----~~~~--~~a~~~~g~~~~~------~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 153 -----PTKM--QYARYRDGLSKLF------TTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp -----CCHH--HHHHHHHHHHHHH------HHTHHHHHHHHHHHTTTSC
T ss_pred -----CCch--hHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhCC
Confidence 2222 2356667777777 7899999999999997663
No 92
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.64 E-value=8.3e-06 Score=91.62 Aligned_cols=227 Identities=13% Similarity=0.033 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHH-HHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 478 AHVKLIQHLAVFK---GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLH-ERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 478 al~~LA~~la~~G---~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~-~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
+..+||..+...| ++++|+..++.+.+.-+.. ......++..+ .-....+++.+|..+++++. + + +
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~--g--~ 247 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P--G--Y 247 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G--G--S
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C--C--C
Confidence 7899999999999 9999999999887654321 11112222100 00112369999999999986 2 2 3
Q ss_pred hhhHHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC-----ChhhHHHHHHHHH
Q 004081 554 MDLKTEASLRHART-L--LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-----NAVLGIPYALASL 625 (775)
Q Consensus 554 ~~~~~~a~~~~a~l-l--~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G-----~~~~Al~~l~~AL 625 (775)
..+.+.++.+ + ...||+++|++++++++. .+...++..+|.+|. .| ++.+|+.++.+|.
T Consensus 248 ----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 248 ----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp ----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 3577888887 4 579999999999999885 235778999999998 66 9999999999887
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCCh
Q 004081 626 SFCQLLNLDLLKASATLTLAELWLSFGP---NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP 702 (775)
Q Consensus 626 ~la~~~g~~~~~A~al~~La~l~l~lG~---~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~ 702 (775)
.| .+.+...||.++.. |. ..+++|+..++.+... |+ ..+.+.||.++..+. +...++
T Consensus 315 -----~g----~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~G~--g~~~d~ 374 (452)
T 3e4b_A 315 -----GR----EVAADYYLGQIYRR-GYLGKVYPQKALDHLLTAARN----GQ----NSADFAIAQLFSQGK--GTKPDP 374 (452)
T ss_dssp -----TT----CHHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHTT----TC----TTHHHHHHHHHHSCT--TBCCCH
T ss_pred -----CC----CHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHhh----Ch----HHHHHHHHHHHHhCC--CCCCCH
Confidence 23 25788889988875 52 1359999999998753 44 467889999998743 346789
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Q 004081 703 EAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG--RLAEREEAAALFKEY 755 (775)
Q Consensus 703 ~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lG--d~~~A~~aAa~f~ql 755 (775)
.+|+.++++|.+ .+.+. +...++.+...+. +...+.+.+..|++.
T Consensus 375 ~~A~~~~~~A~~----~g~~~----a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 375 LNAYVFSQLAKA----QDTPE----ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHT----TCCHH----HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHH----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999974 44432 3344555544332 344445555556554
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.62 E-value=1.2e-07 Score=112.49 Aligned_cols=186 Identities=12% Similarity=-0.052 Sum_probs=141.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhhh-hcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMA-SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~-~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..+..|++.+|.+.+++++... ......+|. ...+++.++.++...|++++|++.+++++... .....++..
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~ 472 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV------GWRWRLVWY 472 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------CCCHHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC------cchHHHHHH
Confidence 3478999999999999998110 000000221 34688999999999999999999999999742 334789999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
+|.++...|++++|+..+.+|+.+.-.. +.+...+|.++..+|+. ++ +..+++++..--. -+.++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~--~~-~~~~~~al~~~P~------~~~a~ 537 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNT--DE-HKFYQTVWSTNDG------VISAA 537 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCC--CT-TCHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCh--HH-HHHHHHHHHhCCc------hHHHH
Confidence 9999999999999999999999986433 46778899999999999 88 9999999875322 23588
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 744 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~ 744 (775)
+.+|.++.. .|++++|+..+++|++.- ..-.++++.+|.++...|+..+
T Consensus 538 ~~lg~~~~~------~g~~~~A~~~~~~al~l~------P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 538 FGLARARSA------EGDRVGAVRTLDEVPPTS------RHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHTSCTTS------TTHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHH------cCCHHHHHHHHHhhcccC------cccHHHHHHHHHHHHccCCCCC
Confidence 999999999 999999999999887532 2335677888888877666333
No 94
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.58 E-value=4.4e-06 Score=88.23 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHhhhcCchHHHHHHHhhHH---HHHHhcCCH-------HHHHHHHHHHhh-hhhcCCCCChhhHHHHH
Q 004081 493 KEAFSALKIAEEKFLSVSKSRILLLKLQLLH---ERSLHRGHL-------KLAQKVCDELGV-MASSVTGVDMDLKTEAS 561 (775)
Q Consensus 493 ~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~---~~al~~G~~-------~~A~~~l~~ll~-L~~~~~~~D~~~~~~a~ 561 (775)
++|...++++....|.. ...|.....+.. ......|++ ++|...+++++. +.+ + ...++
T Consensus 33 ~~a~~~~~~al~~~p~~--~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-----~---~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-----K---NMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-----T---CHHHH
T ss_pred HHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-----c---cHHHH
Confidence 67788888888877643 334443221100 011246885 999999999988 422 2 34578
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS-VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA 640 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~-aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a 640 (775)
...+.++...|++++|.+.+++++.. . ..... ++..+|.++.+.|++++|+..+.+|+.+.... ..+
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~ 170 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI-----E-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HHV 170 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS-----S-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------THH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-----c-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHH
Confidence 89999999999999999999999862 1 22233 88999999999999999999999998764311 222
Q ss_pred HHHHHHHHH-HcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhc
Q 004081 641 TLTLAELWL-SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 719 (775)
Q Consensus 641 l~~La~l~l-~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l 719 (775)
....+.+.. ..|+. ++|+.+++.++...-. ...++..+|..+.. .|++++|+..+++|+....
T Consensus 171 ~~~~a~~~~~~~~~~--~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~------~g~~~~A~~~~~~al~~~~-- 234 (308)
T 2ond_A 171 YVTAALMEYYCSKDK--SVAFKIFELGLKKYGD------IPEYVLAYIDYLSH------LNEDNNTRVLFERVLTSGS-- 234 (308)
T ss_dssp HHHHHHHHHHTSCCH--HHHHHHHHHHHHHHTT------CHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC------cHHHHHHHHHHHHH------CCCHHHHHHHHHHHHhccC--
Confidence 333343322 26887 9999999999886522 25678888888888 8999999999999986310
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhcc
Q 004081 720 EDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 761 (775)
Q Consensus 720 ~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~~ 761 (775)
-.+.....+....+.+....|+.+.+.. .+++.....++
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~---~~~~a~~~~p~ 273 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILK---VEKRRFTAFRE 273 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHccc
Confidence 0222345677778888899999988875 45555554443
No 95
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.57 E-value=2.4e-06 Score=90.26 Aligned_cols=192 Identities=8% Similarity=-0.026 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHH-hhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHH
Q 004081 492 YKEAFSALKIAEEK-FLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA 570 (775)
Q Consensus 492 y~eAl~~L~~a~~~-f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~ 570 (775)
+++|...++++.+. .|. ....|.... ......|++++|...+++++.+.+ .++. .++...+.++.+
T Consensus 80 ~~~A~~~~~rAl~~~~p~--~~~~~~~~~----~~~~~~~~~~~A~~~~~~al~~~p----~~~~---~~~~~~~~~~~~ 146 (308)
T 2ond_A 80 SDEAANIYERAISTLLKK--NMLLYFAYA----DYEESRMKYEKVHSIYNRLLAIED----IDPT---LVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT--CHHHHHHHH----HHHHHTTCHHHHHHHHHHHHTSSS----SCTH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcc--cHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhccc----cCcc---HHHHHHHHHHHH
Confidence 49999999999984 442 223444322 346778999999999999998522 2321 278889999999
Q ss_pred cCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 004081 571 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK-KSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 649 (775)
Q Consensus 571 ~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~-~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l 649 (775)
.|++++|...+++++... .....+++..+.+.. ..|+++.|+..+.+++.+.-. ...+...++.++.
T Consensus 147 ~~~~~~A~~~~~~a~~~~------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~ 214 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLS 214 (308)
T ss_dssp HHCHHHHHHHHHHHHTST------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH
Confidence 999999999999998632 122445555555543 379999999999999998632 2466788999999
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 004081 650 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 718 (775)
Q Consensus 650 ~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~ 718 (775)
.+|+. ++|+.++++++.... -++......+..++..... .|+++.|...+++|++.+-.
T Consensus 215 ~~g~~--~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~------~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 215 HLNED--NNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESN------IGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp TTCCH--HHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHTTT
T ss_pred HCCCH--HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHccc
Confidence 99998 999999999986420 0111234566667777777 89999999999999988753
No 96
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.56 E-value=2.6e-06 Score=97.14 Aligned_cols=146 Identities=9% Similarity=0.019 Sum_probs=121.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-cc-cchhHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVL 601 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-~g-d~~~~a~aL 601 (775)
.....+|+|++|+.++.+++.+...+-+.+-...+.++.+++.++..+|+|++|..++++++.+..+ .| +....+..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3567899999999999999998766544444447889999999999999999999999999998775 33 345568899
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHh-CCc-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 602 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLD-LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 602 l~lA~i~~~~G~~~~Al~~l~~AL~la~~~-g~~-~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
.++|.+|...|++++|..++.+|+++.... |.+ ...+..+..|+.++..+|.. ++|..++..+....+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~--~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF--RQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999554 543 46667778899999889887 999999998865553
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.54 E-value=1.3e-06 Score=100.65 Aligned_cols=181 Identities=9% Similarity=-0.037 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 004081 529 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 608 (775)
Q Consensus 529 ~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~ 608 (775)
.|++++|...+++++.+.+ + ...++..++.++...|++++|++.+++++.. ......++..+|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p-----~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-----Q---DFVAWLMLADAELGMGDTTAGEMAVQRGLAL------HPGHPEAVARLGRVR 67 (568)
T ss_dssp ------------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------STTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Confidence 4789999999999988633 1 3568999999999999999999999999863 334578899999999
Q ss_pred HhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHH
Q 004081 609 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 688 (775)
Q Consensus 609 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr 688 (775)
...|++++|+..+.+++.+... ...++..+|.++..+|+. ++|++.+++++..--. ...++..+|.
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~------~~~~~~~l~~ 133 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPE------HPGIALWLGHALEDAGQA--EAAAAAYTRAHQLLPE------EPYITAQLLN 133 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC------CHHHHHHHHH
Confidence 9999999999999999988532 256788999999999998 9999999999876422 2467889999
Q ss_pred hhhcCCCCCCC---CChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004081 689 CLLSDPSFSVS---QNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 754 (775)
Q Consensus 689 ~~lA~~~~~~~---g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~q 754 (775)
++.. . |++++|+..+++|++.......+ +..++ ..+.+.....+..|..
T Consensus 134 ~~~~------~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~-----~~~~~~~~~~~~~~~~ 185 (568)
T 2vsy_A 134 WRRR------LCDWRALDVLSAQVRAAVAQGVGAVEP------FAFLS-----EDASAAEQLACARTRA 185 (568)
T ss_dssp HHHH------TTCCTTHHHHHHHHHHHHHHTCCCSCH------HHHTT-----SCCCHHHHHHHHHHHH
T ss_pred HHHH------hhccccHHHHHHHHHHHHhcCCcccCh------HHHhC-----CCCHHHHHHHHHHHHH
Confidence 9998 7 99999999999999876544332 33333 5555555554444443
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.49 E-value=2.2e-06 Score=85.41 Aligned_cols=168 Identities=11% Similarity=-0.046 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHH-----------HH--HHhhHHHHHHhcCCHHHHHHHHHHHh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIL-----------LL--KLQLLHERSLHRGHLKLAQKVCDELG 543 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~-----------~l--~l~l~~~~al~~G~~~~A~~~l~~ll 543 (775)
..+...|..+...|+|++|...++++.+..|.......+ .+ .++ ..+...|++++|...+++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA---LAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHH---HHHHHCCCHHHHHHHHHHHH
Confidence 456778888999999999999999999887754332222 00 022 46789999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChh--hHHHHH
Q 004081 544 VMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--LGIPYA 621 (775)
Q Consensus 544 ~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~--~Al~~l 621 (775)
.+.+ . ...+++.+|.++...|++++|++.+++++.. .+....++..+|.++...|+.. .+...+
T Consensus 82 ~~~p-------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 82 QKAP-------N-NVDCLEACAEMQVCRGQEKDALRMYEKILQL------EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHCT-------T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9733 2 3568999999999999999999999999973 2345778999999987766543 333333
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 622 LASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 622 ~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
.+++. +.....+...+|..+..+|+. ++|+..+++++.+-
T Consensus 148 ~~~~~-------~~~~~~a~~~~g~~~~~~~~~--~~A~~~~~~al~l~ 187 (208)
T 3urz_A 148 KKLSS-------PTKMQYARYRDGLSKLFTTRY--EKARNSLQKVILRF 187 (208)
T ss_dssp C---C-------CCHHHHHHHHHHHHHHHHHTH--HHHHHHHHHHTTTS
T ss_pred HHHhC-------CCchhHHHHHHHHHHHHccCH--HHHHHHHHHHHHhC
Confidence 33321 112223455677777778887 99999999998764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=6.7e-07 Score=94.11 Aligned_cols=160 Identities=16% Similarity=0.050 Sum_probs=129.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|++++|...+++++.+.+ . ...+++.++.++...|++++|++.+++++.. ++ ........
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p-~~~~~~~~ 190 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSN-------Q-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQ-DTRYQGLV 190 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTT-------S-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GC-SHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-------c-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hc-chHHHHHH
Confidence 367899999999999999999733 2 3578999999999999999999999988752 22 33445566
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 683 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~ 683 (775)
.+..+...|+...|+..+.+++.+.-. ...++..||.++...|+. ++|+..+++++..--.. ..+.++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~~~g~~--~~A~~~l~~~l~~~p~~----~~~~a~ 258 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLHQVGRN--EEALELLFGHLRXDLTA----ADGQTR 258 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTTG----GGGHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHHHcccH--HHHHHHHHHHHhccccc----ccchHH
Confidence 666677888899999999998887532 246788999999999998 99999999998764322 346778
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 684 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 684 ~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
..|+.++.. .|+.++|+..+++++..
T Consensus 259 ~~l~~~~~~------~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 259 XTFQEILAA------LGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHH------HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCCCcHHHHHHHHHHH
Confidence 889999988 89999999999999864
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.48 E-value=9.2e-07 Score=85.40 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
....+|..+...|++++|...++++.+..|.... .+. .++ ..++..|++++|...++++..+. + ++.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~--a~~-~la---~~~~~~g~~~~A~~~~~~a~~~~----p-~~~-- 74 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD--VKL-AKA---DCLLETKQFELAQELLATIPLEY----Q-DNS-- 74 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH--HHH-HHH---HHHHHTTCHHHHHHHHTTCCGGG----C-CHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHH-HHH---HHHHHCCCHHHHHHHHHHhhhcc----C-ChH--
Confidence 4677888999999999999999998887764322 221 222 36788999999999999987752 2 322
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 558 TEASLRHARTL-LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 558 ~~a~~~~a~ll-~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.....+.+. ...++..+|+..+++++.. .+....++..+|.++...|++++|+..+.+++.+.... .
T Consensus 75 --~~~~~~~~~~~~~~~~~~a~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~ 142 (176)
T 2r5s_A 75 --YKSLIAKLELHQQAAESPELKRLEQELAA------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----Q 142 (176)
T ss_dssp --HHHHHHHHHHHHHHTSCHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT----T
T ss_pred --HHHHHHHHHHHhhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----C
Confidence 222233332 2334555688888888762 23457889999999999999999999999998764322 1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
...++..|+.++..+|+. ++|...++++|-.+
T Consensus 143 ~~~a~~~l~~~~~~~g~~--~~A~~~y~~al~~~ 174 (176)
T 2r5s_A 143 DGEVKKTFMDILSALGQG--NAIASKYRRQLYSI 174 (176)
T ss_dssp TTHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHH
Confidence 235678899999999999 99999999988654
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=2.4e-06 Score=83.93 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
.....+.++|..+...|+|++|...++.+... ... ....++ ..+...|++.+|...+.+++.+.+ +
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~~~-~~~~lg---~~~~~~g~~~~A~~~~~~al~~~~-----~ 69 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDP-----HSR-ICFNIG---CMYTILKNMTEAEKAFTRSINRDK-----H 69 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-----CHH-HHHHHH---HHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-----ChH-HHHHHH---HHHHHcCCHHHHHHHHHHHHHhCc-----c
Confidence 45667889999999999999999999877311 111 122232 367899999999999999998732 1
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc----------cchhHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN----------LQVENASVLLLLAEIHKKSGNAVLGIPYALA 623 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g----------d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~ 623 (775)
...++..+|.++...|++++|++.+++++....... .......++..+|.++...|+++.|+..+.+
T Consensus 70 ---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 70 ---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 356889999999999999999999999998655433 3445678999999999999999999999999
Q ss_pred HHHHHH
Q 004081 624 SLSFCQ 629 (775)
Q Consensus 624 AL~la~ 629 (775)
++.+..
T Consensus 147 al~~~p 152 (213)
T 1hh8_A 147 ATSMKS 152 (213)
T ss_dssp HHTTCC
T ss_pred HHHcCc
Confidence 988764
No 102
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=5.7e-07 Score=95.06 Aligned_cols=219 Identities=10% Similarity=-0.052 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHh-hHHHHHHhcCCHHHHHHHHHHHhhhhhcCC--
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ-LLHERSLHRGHLKLAQKVCDELGVMASSVT-- 550 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~-l~~~~al~~G~~~~A~~~l~~ll~L~~~~~-- 550 (775)
+...-+...|.-+ ..+++.+|...+.++.+..|...+...+.+..+ .........+++.++...+.+.+.+.+..-
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 3344445555554 579999999999999999886655443332100 000233444455667667777766433211
Q ss_pred -----C----CC--hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHH
Q 004081 551 -----G----VD--MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP 619 (775)
Q Consensus 551 -----~----~D--~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~ 619 (775)
+ .+ ......+.+..+.++...|+|++|.+.++.++. + ..... ++..+|.++.+.|++..|+.
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~-~p~~~-~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----A-GSEHL-VAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----T-TCHHH-HHHHHHHHHHHTTCHHHHHH
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----c-CCchH-HHHHHHHHHHHcCCHHHHHH
Confidence 0 00 012456778889999999999999999987764 2 23445 88999999999999999999
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 004081 620 YALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS 699 (775)
Q Consensus 620 ~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~ 699 (775)
.+.++... .++.....+.+.||.++..+|+. ++|+..|++++.. ..++.....+.+.+|.|+.. .
T Consensus 157 ~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~--~eAl~~l~~a~~g---~~~P~~~~da~~~~glaL~~------l 221 (282)
T 4f3v_A 157 QVKSAGKW----PDKFLAGAAGVAHGVAAANLALF--TEAERRLTEANDS---PAGEACARAIAWYLAMARRS------Q 221 (282)
T ss_dssp HHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTS---TTTTTTHHHHHHHHHHHHHH------H
T ss_pred HHHHhhcc----CCcccHHHHHHHHHHHHHHCCCH--HHHHHHHHHHhcC---CCCccccHHHHHHHHHHHHH------c
Confidence 99766433 25555677889999999999997 9999999998731 11022255678889999999 9
Q ss_pred CChHHHHHHHHHHHHH
Q 004081 700 QNPEAVLDPLRQASEE 715 (775)
Q Consensus 700 g~~~~Al~~L~~Al~~ 715 (775)
|+.++|...|+++++.
T Consensus 222 Gr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 222 GNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999874
No 103
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.43 E-value=5.1e-06 Score=94.74 Aligned_cols=149 Identities=9% Similarity=-0.057 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhh-cCchHHHHHH-HhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~-~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
...+..+..+|+|++|..++++++++... ++..+...+. +..+...+..+|+|++|..++.+++.+...+-+.+-...
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34445566899999999999999997654 4554433332 333335889999999999999999998766544444447
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-ccc-chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-~gd-~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+..++++|.++..+|+|++|..++++++.+... .|. ....+..+.++++++...|.+..|...+.++.+-+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998775 344 44567788999999999999999999999987665
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.43 E-value=7.9e-07 Score=84.12 Aligned_cols=147 Identities=9% Similarity=-0.071 Sum_probs=108.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHH
Q 004081 481 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 560 (775)
Q Consensus 481 ~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a 560 (775)
+||.++..+|++++|++.++.+.+..|..... ...++ ..++..|+|++|...+.+++.+.+ . -..+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~---~~~la---~~y~~~~~~~~A~~~~~~al~~~p-------~-~~~a 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIK---GFYFA---KLYYEAKEYDLAKKYICTYINVQE-------R-DPKA 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTT---HHHHH---HHHHHTTCHHHHHHHHHHHHHHCT-------T-CHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHH---HHHHH---HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHH
Confidence 57777888999999999998877654432111 11222 468899999999999999999733 1 3568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHHhCCcHHHHH
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP-YALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~-~l~~AL~la~~~g~~~~~A~ 639 (775)
+..+|.++...|++++|+..+++++.+ .+....++..+|.++...|++..|.. ++.+|+.+.-. ...
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~------~~~ 135 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVEL------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG------SPA 135 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT------CHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC------CHH
Confidence 999999999999999999999999974 23447789999999999999987665 46788887532 235
Q ss_pred HHHHHHHHHHHcCC
Q 004081 640 ATLTLAELWLSFGP 653 (775)
Q Consensus 640 al~~La~l~l~lG~ 653 (775)
+....+.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 56667778777775
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.42 E-value=6.8e-06 Score=72.82 Aligned_cols=131 Identities=16% Similarity=0.080 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.++..+|..+...|++++|...++++....+.. ...+. .++ ..+...|++.+|...+.++....+ +
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~-~~a---~~~~~~~~~~~A~~~~~~~~~~~~-----~--- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWY-NLG---NAYYKQGDYDEAIEYYQKALELDP-----R--- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHH-HHH---HHHHHHTCHHHHHHHHHHHHHHCT-----T---
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc--hhHHH-HHH---HHHHHhcCHHHHHHHHHHHHHHCC-----C---
Confidence 356788999999999999999999998765432 12111 122 356788999999999999988632 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
...+...++.++...|++++|++.+++++... .....++..+|.++...|+++.|...+.+++.+
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 24567889999999999999999999988742 223567889999999999999999999988765
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.41 E-value=5.2e-06 Score=73.58 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
.+++.++.++...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+++.+... ..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------ch
Confidence 357788999999999999999999988632 223667888999999999999999999998876421 23
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
.+...+|.++...|+. ++|+..+++++..... ...++..+|.++.. .|++++|+.++++++..
T Consensus 70 ~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDY--DEAIEYYQKALELDPR------SAEAWYNLGNAYYK------QGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHTTTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH------HccHHHHHHHHHHHHcc
Confidence 5667899999999998 9999999999875322 14577889999998 99999999999998764
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.39 E-value=1.2e-06 Score=86.02 Aligned_cols=138 Identities=9% Similarity=-0.031 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.....+.+|..+...|++++|++.+++++. . ...++..+|.++...|++++|+..+.+++.+.. .
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------H 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------c
Confidence 445678899999999999999999988752 1 467999999999999999999999999998753 2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcC----------CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG----------GLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 706 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G----------~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al 706 (775)
.+.+...+|.++..+|+. ++|+..++.++....... .....+.+++.+|.++.. .|++++|+
T Consensus 70 ~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~ 141 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKY--DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK------KEEWKKAE 141 (213)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH------TTCHHHHH
T ss_pred chHHHHHHHHHHHHcccH--HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH------ccCHHHHH
Confidence 257788999999999998 999999999988654433 222346789999999999 99999999
Q ss_pred HHHHHHHHHHH
Q 004081 707 DPLRQASEELQ 717 (775)
Q Consensus 707 ~~L~~Al~~f~ 717 (775)
.++++|++...
T Consensus 142 ~~~~~al~~~p 152 (213)
T 1hh8_A 142 EQLALATSMKS 152 (213)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHcCc
Confidence 99999987654
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=1.1e-05 Score=75.29 Aligned_cols=142 Identities=13% Similarity=-0.042 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
..+..+..+|..+...|+|++|...++.+....|.. ...+ ..++ ..+...|++.+|...+.+++.+.+ +
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~-~~~a---~~~~~~~~~~~A~~~~~~a~~~~~-----~ 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYY-GNRS---LAYLRTECYGYALGDATRAIELDK-----K 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHH-HHHH---HHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHH-HHHH---HHHHHcCCHHHHHHHHHHHHHhCc-----c
Confidence 456788999999999999999999999999877642 1111 1222 367889999999999999998733 1
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
...++..+|.++...|++++|++.+++++.... ....+...+.++.++...|++++|+..+.++..+......
T Consensus 80 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 80 ---YIKGYYRRAASNMALGKFRAALRDYETVVKVKP----HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 246789999999999999999999999987422 2334555677777788999999999999988888766543
No 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=5.8e-06 Score=75.84 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC-cH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL-DL 635 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~-~~ 635 (775)
.+.+...+|..+...|+|++|++.+++++.+. +..+.++..+|.++...|+++.|+..+.+|+.+...... ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 56778899999999999999999999999742 334788999999999999999999999999999876654 45
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
..+.+...+|.++..+|+. ++|+..++.++..
T Consensus 81 ~~a~~~~~lg~~~~~~~~~--~~A~~~~~kal~~ 112 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDL--SLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhh
Confidence 6678999999999999998 9999999999764
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.37 E-value=9.9e-06 Score=81.03 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=122.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHhhcccchhHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN----QFSEAAAVAHSLFCMCYKFNLQVENASV 600 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~G----d~~eAl~~l~~aL~~~~~~gd~~~~a~a 600 (775)
.+...|++.+|..+++++... + ...+.+.++.++.. | ++++|++++++++. .+...+
T Consensus 27 ~~~~~~~~~~A~~~~~~a~~~----g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--------~g~~~a 87 (212)
T 3rjv_A 27 TWVSSGDYQKAEYWAQKAAAQ----G------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--------AGSKSG 87 (212)
T ss_dssp HHHHHTCHHHHHHHHHHHHHT----T------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--------TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHc----C------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--------CCCHHH
Confidence 456689999999999998763 2 34678889999887 7 99999999999865 345778
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHh
Q 004081 601 LLLLAEIHKK----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 601 Ll~lA~i~~~----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~----lG~~~f~~Al~lLe~aLp~il~ 672 (775)
+..+|.++.. .+++.+|+.++.+|+.. +.....+.+...||.++.. .++. ++|+..++.++..
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~--~~A~~~~~~A~~~--- 158 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDD--VKASEYFKGSSSL--- 158 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCH--HHHHHHHHHHHHT---
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHc---
Confidence 8999999987 88999999999888754 3322446788899999987 5555 9999999999765
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 673 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 673 ~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
.|+. .+++.||.++.....-....++.+|+.++++|.+.
T Consensus 159 ~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 159 SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2332 37889999988621100244899999999999764
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.36 E-value=1.4e-06 Score=84.08 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=119.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|++++|...+++++.+.+ + ...++..++.++...|++++|++.+++++.. ++ .......
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P-----~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p--~~~~~~~ 78 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQ-----S---RGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ--DNSYKSL 78 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHH-----T---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC--CHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-----C---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC--ChHHHHH
Confidence 367889999999999999988744 1 3568999999999999999999999988752 11 1233333
Q ss_pred HHHHHH-hcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHH
Q 004081 604 LAEIHK-KSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 682 (775)
Q Consensus 604 lA~i~~-~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a 682 (775)
++.+.. ..+....|+..+.+++.+.-. ...++..+|.++...|+. ++|+..+++++..--.. ....+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~----~~~~a 146 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPD------NFELACELAVQYNQVGRD--EEALELLWNILKVNLGA----QDGEV 146 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCTTT----TTTHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccH--HHHHHHHHHHHHhCccc----ChHHH
Confidence 443322 223344578888888876432 247788899999999998 99999999987653222 22457
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 683 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 683 ~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
+..+|.++.. .|+.++|+..+++++..
T Consensus 147 ~~~l~~~~~~------~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 147 KKTFMDILSA------LGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH------HCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------hCCCCcHHHHHHHHHHH
Confidence 7888999998 89999999999998753
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.36 E-value=2.7e-06 Score=97.87 Aligned_cols=156 Identities=15% Similarity=0.073 Sum_probs=101.3
Q ss_pred hcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHH
Q 004081 489 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 568 (775)
Q Consensus 489 ~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll 568 (775)
.|++++|...++++.+..|... .. ...++ ..++..|++++|...+++++.+.+ + ...++..++.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~--~~-~~~lg---~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF--VA-WLMLA---DAELGMGDTTAGEMAVQRGLALHP-----G---HPEAVARLGRVR 67 (568)
T ss_dssp -------------------CCH--HH-HHHHH---HHHHHHTCHHHHHHHHHHHHTTST-----T---CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCH--HH-HHHHH---HHHHHcCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHH
Confidence 4788888888888877655321 11 11222 356778999999999999888632 1 256788889999
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 004081 569 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 648 (775)
Q Consensus 569 ~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 648 (775)
...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+... ...++..++.++
T Consensus 68 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~ 135 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAA------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------EPYITAQLLNWR 135 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 99999999999998888742 233678888999999999999999999888887432 246677888888
Q ss_pred HHc---CCChHHHHHHHHHHHHhHHHh
Q 004081 649 LSF---GPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 649 l~l---G~~~f~~Al~lLe~aLp~il~ 672 (775)
..+ |+. ++|.+.+++++..--.
T Consensus 136 ~~~~~~g~~--~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 136 RRLCDWRAL--DVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHTTCCTTH--HHHHHHHHHHHHHTCC
T ss_pred HHhhccccH--HHHHHHHHHHHhcCCc
Confidence 888 776 8899999888766443
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.35 E-value=7.3e-07 Score=84.36 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=112.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 004081 564 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 643 (775)
Q Consensus 564 ~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 643 (775)
+|.++..+|++++|++.+++++. ..+....++..+|.+|...|+++.|+..+.+++.+... .+.+...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence 56667788899999999888764 34455667888999999999999999999999988532 2578888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHH-HHHHHHHHHHhccCH
Q 004081 644 LAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLD-PLRQASEELQVLEDH 722 (775)
Q Consensus 644 La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~-~L~~Al~~f~~l~~~ 722 (775)
||.++..+|+. ++|+..++.++..--. ...+++.+|.++.. .|+..+|.. ++++|++..-
T Consensus 71 lg~~~~~~~~~--~~A~~~~~~al~~~p~------~~~~~~~la~~~~~------~~~~~~aa~~~~~~al~l~P----- 131 (150)
T 4ga2_A 71 LGLLYELEENT--DKAVECYRRSVELNPT------QKDLVLKIAELLCK------NDVTDGRAKYWVERAAKLFP----- 131 (150)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH------HCSSSSHHHHHHHHHHHHST-----
T ss_pred HHHHHHHcCch--HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHhCc-----
Confidence 99999999998 9999999999876321 24578899999998 888776554 5789987642
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 004081 723 ELAAEAFYLIAIVFDKLGR 741 (775)
Q Consensus 723 ~~~~evl~~LA~l~~~lGd 741 (775)
.-..++..++.++...|+
T Consensus 132 -~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 132 -GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -TCHHHHHHHHHHHHTCCC
T ss_pred -CCHHHHHHHHHHHHHhCc
Confidence 234567788888888775
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=6.1e-06 Score=77.00 Aligned_cols=142 Identities=10% Similarity=-0.002 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 635 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 635 (775)
..+..+..+|..+...|++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+...
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 367788999999999999999999999998742 233778999999999999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
...+...+|.++..+|+. ++|+..+++++...-. + ..+.....++..+.. .|++++|+..++++...
T Consensus 80 -~~~~~~~~a~~~~~~~~~--~~A~~~~~~a~~~~p~--~--~~~~~~~~~~~~~~~------~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 80 -YIKGYYRRAASNMALGKF--RAALRDYETVVKVKPH--D--KDAKMKYQECNKIVK------QKAFERAIAGDEHKRSV 146 (166)
T ss_dssp -CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHSTT--C--HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHHH------HHHHHHHHHcccchHHH
Confidence 256788899999999998 9999999999876432 2 233344555555776 78899999999999888
Q ss_pred HHhccC
Q 004081 716 LQVLED 721 (775)
Q Consensus 716 f~~l~~ 721 (775)
+..+..
T Consensus 147 ~~~~~~ 152 (166)
T 1a17_A 147 VDSLDI 152 (166)
T ss_dssp HHHCCC
T ss_pred hcccch
Confidence 876654
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.35 E-value=1.1e-05 Score=80.75 Aligned_cols=173 Identities=13% Similarity=0.060 Sum_probs=133.3
Q ss_pred HHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC-
Q 004081 534 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG- 612 (775)
Q Consensus 534 ~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G- 612 (775)
+|...+.++... + -..+.+.++.++...|++++|++++++++. .+...++..+|.++.. |
T Consensus 4 eA~~~~~~aa~~----g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------~g~~~a~~~lg~~y~~-~g 64 (212)
T 3rjv_A 4 EPGSQYQQQAEA----G------DRRAQYYLADTWVSSGDYQKAEYWAQKAAA--------QGDGDALALLAQLKIR-NP 64 (212)
T ss_dssp CTTHHHHHHHHT----T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHTTS-ST
T ss_pred hHHHHHHHHHHC----C------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHc-CC
Confidence 455666666652 2 356789999999999999999999999876 2457889999999998 7
Q ss_pred ---ChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHH
Q 004081 613 ---NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 685 (775)
Q Consensus 613 ---~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~----lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~ 685 (775)
++.+|+.++.+|+.. + .+.+...||.++.. .++. ++|+..++.++.. |+....+.+++.
T Consensus 65 ~~~~~~~A~~~~~~A~~~----g----~~~a~~~Lg~~y~~g~g~~~d~--~~A~~~~~~A~~~----~~~~~~~~a~~~ 130 (212)
T 3rjv_A 65 QQADYPQARQLAEKAVEA----G----SKSGEIVLARVLVNRQAGATDV--AHAITLLQDAARD----SESDAAVDAQML 130 (212)
T ss_dssp TSCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHTCGGGSSCCH--HHHHHHHHHHTSS----TTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCccCH--HHHHHHHHHHHHc----CCCcchHHHHHH
Confidence 899999999998543 3 35778889999976 5555 9999999998754 553345778999
Q ss_pred HHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc-C-----CHHHHHHH
Q 004081 686 EAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL-G-----RLAEREEA 748 (775)
Q Consensus 686 LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~l-G-----d~~~A~~a 748 (775)
||.++..+. +..+++.+|+.++++|.+. -+++ .+++.||.+|... | |.+.|..+
T Consensus 131 Lg~~y~~g~--g~~~d~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~ 190 (212)
T 3rjv_A 131 LGLIYASGV--HGPEDDVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHW 190 (212)
T ss_dssp HHHHHHHTS--SSSCCHHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHH
T ss_pred HHHHHHcCC--CCCCCHHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 999998743 3367899999999999754 1232 3688999999764 4 77777663
No 116
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.29 E-value=5.8e-06 Score=75.87 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc-CC
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GG 675 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~-G~ 675 (775)
.+.++..+|.++.+.|++++|+..+.+|+.+... .+.++..+|.++..+|+. ++|+..++.++.+-... .+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~--~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKF--AECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhH--HHHHHHHHHHHHhCcccchh
Confidence 4667889999999999999999999999988432 357788999999999998 99999999999887655 56
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 676 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 676 ~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
....+.++..+|.++.+ .|++.+|+.++++|+...
T Consensus 79 ~~~~a~~~~~lg~~~~~------~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQK------QNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhC
Confidence 77889999999999999 999999999999998754
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.27 E-value=4.4e-06 Score=88.27 Aligned_cols=197 Identities=10% Similarity=-0.058 Sum_probs=152.9
Q ss_pred HhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHHHhhccc------
Q 004081 527 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH-------ARTLLAANQFSEAAAVAHSLFCMCYKFNL------ 593 (775)
Q Consensus 527 l~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~-------a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd------ 593 (775)
...+++..|.+.+.++..+.+ . ...+++.+ +.++...+++.+++..+.+.+.+....-.
T Consensus 17 ~~~~d~~~A~~~F~~a~~~dP-------~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 17 MLPMSEARSLDLFTEITNYDE-------S-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HTTTCHHHHHHHHHHHHHHCT-------T-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred ccCCCHHHHHHHHHHHHHhCh-------h-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 368999999999999999733 2 35678887 89999999999999988887753222111
Q ss_pred ---------chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004081 594 ---------QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQ 664 (775)
Q Consensus 594 ---------~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe 664 (775)
....-.+.+..|.++...|++++|...+...+. +.+... +...+|.++...|+. ++|+..|+
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~--~dA~~~l~ 159 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERW--TDVIDQVK 159 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCH--HHHHHHHT
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCH--HHHHHHHH
Confidence 012356788899999999999999999876654 223222 677899999999998 99999998
Q ss_pred HHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHhcCCHH
Q 004081 665 QALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED-HELAAEAFYLIAIVFDKLGRLA 743 (775)
Q Consensus 665 ~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~-~~~~~evl~~LA~l~~~lGd~~ 743 (775)
.+.. ..+....+.+++.+|.++.. .|++++|+.+|++|.. -.. |.-..++.+.+|.++..+|+.+
T Consensus 160 ~a~~----~~d~~~~~~a~~~LG~al~~------LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~d 225 (282)
T 4f3v_A 160 SAGK----WPDKFLAGAAGVAHGVAAAN------LALFTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNES 225 (282)
T ss_dssp TGGG----CSCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred Hhhc----cCCcccHHHHHHHHHHHHHH------CCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHH
Confidence 5533 34677778899999999999 9999999999999973 122 4447789999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 004081 744 EREEAAALFKEYVL 757 (775)
Q Consensus 744 ~A~~aAa~f~ql~~ 757 (775)
+|.. .|+++..
T Consensus 226 eA~~---~l~~a~a 236 (282)
T 4f3v_A 226 AAVA---LLEWLQT 236 (282)
T ss_dssp HHHH---HHHHHHH
T ss_pred HHHH---HHHHHHh
Confidence 9877 4554433
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.24 E-value=8.8e-06 Score=74.69 Aligned_cols=118 Identities=11% Similarity=0.023 Sum_probs=96.7
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
.||+ .+++...+|..+...|+|++|++.+++++.. .+....++..+|.++...|+++.|+..+.+|+.+-..
T Consensus 8 inP~-~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 79 (126)
T 4gco_A 8 INPE-LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK- 79 (126)
T ss_dssp CCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-
Confidence 3665 5788999999999999999999999999974 2344788999999999999999999999999988432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhh
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCL 690 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~ 690 (775)
...+...+|.++..+|+. ++|+..++.++.+-- .+ ..++..|++|+
T Consensus 80 -----~~~a~~~lg~~~~~~~~~--~~A~~~~~~al~l~P--~~----~~a~~~l~~~l 125 (126)
T 4gco_A 80 -----FIKGYIRKAACLVAMREW--SKAQRAYEDALQVDP--SN----EEAREGVRNCL 125 (126)
T ss_dssp -----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT--TC----HHHHHHHHHHC
T ss_pred -----hhHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCc--CC----HHHHHHHHHhc
Confidence 256788999999999998 999999999987632 12 23556666654
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.23 E-value=2.3e-05 Score=74.83 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=96.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
+|. ...+++.+|..+...|+|++|++.+++++.. .+....++..+|.++...|++++|+..+.+|+.+.-..
T Consensus 32 ~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~- 103 (151)
T 3gyz_A 32 PDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND- 103 (151)
T ss_dssp CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-
T ss_pred CHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-
Confidence 444 5678999999999999999999999999873 34557889999999999999999999999999986432
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE 686 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~L 686 (775)
..+...+|.++..+|+. ++|+..++.++... ++...+.++...+
T Consensus 104 -----~~~~~~lg~~~~~lg~~--~eA~~~~~~al~l~---~~~~~~~~A~~ll 147 (151)
T 3gyz_A 104 -----YTPVFHTGQCQLRLKAP--LKAKECFELVIQHS---NDEKLKIKAQSYL 147 (151)
T ss_dssp -----CHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 36788999999999998 99999999999875 4555555544433
No 120
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.23 E-value=3.1e-05 Score=88.04 Aligned_cols=207 Identities=9% Similarity=-0.032 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHH-------hcCHH-------HHHHHHHHHHH-HhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHH
Q 004081 476 ALAHVKLIQHLAV-------FKGYK-------EAFSALKIAEE-KFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCD 540 (775)
Q Consensus 476 a~al~~LA~~la~-------~G~y~-------eAl~~L~~a~~-~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~ 540 (775)
..+..++|..+.. .|+++ +|..+++++.+ ..|. ....|.... ......|++++|..+++
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~--~~~l~~~~~----~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYA----DYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS--CHHHHHHHH----HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc--cHHHHHHHH----HHHHhcCCHHHHHHHHH
Confidence 4667777777765 79987 89999999886 4442 223443322 24667899999999999
Q ss_pred HHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH-HHhcCChhhHHH
Q 004081 541 ELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI-HKKSGNAVLGIP 619 (775)
Q Consensus 541 ~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i-~~~~G~~~~Al~ 619 (775)
+++.+. +.+ ...++...+.++.+.|++++|.+.+++++... .....++...+.+ +...|++++|+.
T Consensus 346 ~al~~~----p~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~------~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 346 RLLAIE----DID---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp HHHHSS----SSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT------TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhCcc----ccC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc------CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 999852 223 23578888999999999999999999998632 2223444444444 346899999999
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 004081 620 YALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS 699 (775)
Q Consensus 620 ~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~ 699 (775)
.+.+++...-. ...+...++.++...|+. ++|+.++++++...- .++......+....+.... .
T Consensus 413 ~~e~al~~~p~------~~~~~~~~~~~~~~~g~~--~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~------~ 476 (530)
T 2ooe_A 413 IFELGLKKYGD------IPEYVLAYIDYLSHLNED--NNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESN------I 476 (530)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTTTTCH--HHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHH------S
T ss_pred HHHHHHHHCCC------CHHHHHHHHHHHHhCCCH--hhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHH------c
Confidence 99999987631 145667889999899998 999999999976421 1222333445455555555 7
Q ss_pred CChHHHHHHHHHHHHHHH
Q 004081 700 QNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 700 g~~~~Al~~L~~Al~~f~ 717 (775)
|+.+.+....++|.+.+-
T Consensus 477 G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAFR 494 (530)
T ss_dssp SCHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHCc
Confidence 899999999999998885
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2e-05 Score=70.96 Aligned_cols=113 Identities=12% Similarity=-0.055 Sum_probs=91.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|...+.+++.+.+ . ...++..+|.++...|++++|++.+++++... .....++..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p-------~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~ 77 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAP-------E-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------PNFVRAYIR 77 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-------C-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCcHHHHHH
Confidence 367889999999999999988633 1 24789999999999999999999999999742 334778999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS 650 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~ 650 (775)
+|.++...|++++|+..+.+++.+....+.......+...|+.+...
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999986655544455566666665543
No 122
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.20 E-value=5.3e-05 Score=85.00 Aligned_cols=221 Identities=16% Similarity=0.067 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC---CHHHHHHHHHHHhhhhhcCCCCC
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG---HLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G---~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
.+..+||..+...|+++++....+............ ....++. .+...| ++.+|...+.++... ++.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~---~~~~~g~~~~~~~A~~~~~~aa~~----g~~- 211 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELAT---VYQKKQQPEQQAELLKQMEAGVSR----GTV- 211 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHH---HHHHTTCHHHHHHHHHHHHHHHHT----TCS-
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHH---HHHHcCCcccHHHHHHHHHHHHHC----CCH-
Confidence 567788888888887777766644444333222222 2222332 455689 999999999999874 211
Q ss_pred hhhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH-H--HhcCChhhHHHHHHHHHH
Q 004081 554 MDLKTEASLRHARTLLAA----NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI-H--KKSGNAVLGIPYALASLS 626 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~----Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i-~--~~~G~~~~Al~~l~~AL~ 626 (775)
.+...+.++.++... +|+++|+++++++. .+...++..+|.+ + ...|++.+|+..+.+|+.
T Consensus 212 ---~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 212 ---TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp ---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 234457888888555 79999999998875 3446788899998 5 678999999999999874
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChH
Q 004081 627 FCQLLNLDLLKASATLTLAELWLSFGP---NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPE 703 (775)
Q Consensus 627 la~~~g~~~~~A~al~~La~l~l~lG~---~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~ 703 (775)
. | .+.+...||.++. .|. ..+++|+..++.+. .|+ ..+++.||.++..+. +...++.
T Consensus 280 ~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~----~~A~~~Lg~~y~~G~--g~~~d~~ 339 (452)
T 3e4b_A 280 A----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GRE----VAADYYLGQIYRRGY--LGKVYPQ 339 (452)
T ss_dssp T----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTC----HHHHHHHHHHHHTTT--TSSCCHH
T ss_pred C----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCC----HHHHHHHHHHHHCCC--CCCcCHH
Confidence 3 3 3578888999987 671 12499999999998 344 468889999988732 2356899
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHh----cCCHHHHHH
Q 004081 704 AVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK----LGRLAEREE 747 (775)
Q Consensus 704 ~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~----lGd~~~A~~ 747 (775)
+|+.++++|.+ .++ .++.+.||.+|.. ..|+..|..
T Consensus 340 ~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 340 KALDHLLTAAR----NGQ----NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHHHHHT----TTC----TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHHHh----hCh----HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999999975 233 4567778887764 235555433
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=5e-05 Score=68.32 Aligned_cols=121 Identities=11% Similarity=-0.032 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
.+..+.++|..+...|+|++|+..++++.+..|... ..+ ..++ ..++..|+|++|...+++++.+.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~-~~~a---~~~~~~~~~~~A~~~~~~al~~~p------- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGY-SNRA---AALAKLMSFPEAIADCNKAIEKDP------- 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH-HHHH---HHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHH-HHHH---HHHHHhcCHHHHHHHHHHHHHhCC-------
Confidence 457789999999999999999999999998876432 211 1222 367889999999999999999733
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK 609 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~ 609 (775)
. ...+++.+|.++...|++++|++.+++++......++......++..++.+..
T Consensus 70 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 70 N-FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 2 25689999999999999999999999999877555555555666666655543
No 124
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.17 E-value=0.00012 Score=83.12 Aligned_cols=225 Identities=11% Similarity=0.050 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHH----HhcCCHH-------HHHHHHHHHhh-hhhcCCCCChhhHHHH
Q 004081 493 KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERS----LHRGHLK-------LAQKVCDELGV-MASSVTGVDMDLKTEA 560 (775)
Q Consensus 493 ~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~a----l~~G~~~-------~A~~~l~~ll~-L~~~~~~~D~~~~~~a 560 (775)
..+...++++....|. ....|.....+. ... -..|++. +|...+++++. +.+ + ...+
T Consensus 255 ~~a~~~y~~al~~~p~--~~~~w~~~~~~~-~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-----~---~~~l 323 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGH--HPDIWYEAAQYL-EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-----K---NMLL 323 (530)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHH-HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-----S---CHHH
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHH-HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-----c---cHHH
Confidence 4777889998888764 344555432210 010 1279987 89999999986 422 2 3567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHH
Q 004081 561 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA 640 (775)
Q Consensus 561 ~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a 640 (775)
+...+.++...|++++|...+++++.. .+.....+++..+.+..+.|++++|+..+.+|+..... . ...
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~-----~~~ 392 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-R-----HHV 392 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-C-----THH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-c-----hHH
Confidence 889999999999999999999999872 22222358899999999999999999999999875321 1 122
Q ss_pred HHHHHHH-HHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhc
Q 004081 641 TLTLAEL-WLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 719 (775)
Q Consensus 641 l~~La~l-~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l 719 (775)
....+.+ +...|+. ++|+.+++.++... ++ ...++..++..... .|+.++|+..+++|+....
T Consensus 393 ~~~~a~~~~~~~~~~--~~A~~~~e~al~~~---p~---~~~~~~~~~~~~~~------~g~~~~Ar~~~~~al~~~~-- 456 (530)
T 2ooe_A 393 YVTAALMEYYCSKDK--SVAFKIFELGLKKY---GD---IPEYVLAYIDYLSH------LNEDNNTRVLFERVLTSGS-- 456 (530)
T ss_dssp HHHHHHHHHHHTCCH--HHHHHHHHHHHHHH---TT---CHHHHHHHHHHHTT------TTCHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHcCCh--hHHHHHHHHHHHHC---CC---CHHHHHHHHHHHHh------CCCHhhHHHHHHHHHhccC--
Confidence 2222323 2358887 99999999998765 22 24677888888888 8999999999999986421
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004081 720 EDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 755 (775)
Q Consensus 720 ~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql 755 (775)
.++.....++..........|+.+.+..+.....+.
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 133344556666677788889998887744444333
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.17 E-value=1.2e-05 Score=75.79 Aligned_cols=114 Identities=18% Similarity=0.090 Sum_probs=93.6
Q ss_pred HHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhh
Q 004081 537 KVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVL 616 (775)
Q Consensus 537 ~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~ 616 (775)
..+++++.+ +|. ...+++.++..+...|+|++|++.+++++.. ......++..+|.++...|+++.
T Consensus 8 ~~~~~al~~-------~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 8 GTIAMLNEI-------SSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL------DHYDSRFFLGLGACRQAMGQYDL 73 (148)
T ss_dssp CSHHHHTTC-------CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHcC-------CHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHHhhHHH
Confidence 345566554 332 5678899999999999999999999999863 23457788999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 617 GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 617 Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
|+..+.+++.+.... ..+...+|.++..+|+. ++|+..++.++...-.
T Consensus 74 A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 74 AIHSYSYGAVMDIXE------PRFPFHAAECLLQXGEL--AEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCC------chHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCcC
Confidence 999999999885422 36778899999999998 9999999999877643
No 126
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=1.8e-05 Score=74.94 Aligned_cols=108 Identities=12% Similarity=0.007 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHHHHHHhcCChhhHHHHHH
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL------------QVENASVLLLLAEIHKKSGNAVLGIPYAL 622 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd------------~~~~a~aLl~lA~i~~~~G~~~~Al~~l~ 622 (775)
...+..+...|..+...|+|++|++.+++++..+..... ......++..+|.++...|++..|+..+.
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 346788899999999999999999999999987654322 44567899999999999999999999999
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 623 ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 623 ~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+|+.+.. ..+.++..+|.++..+|+. ++|+..++.++.+-
T Consensus 88 ~al~~~p------~~~~a~~~~g~~~~~~g~~--~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 88 EVLKREE------TNEKALFRRAKARIAAWKL--DEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHST------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC
T ss_pred HHHhcCC------cchHHHHHHHHHHHHHhcH--HHHHHHHHHHHhcC
Confidence 9999842 2357889999999999998 99999999998774
No 127
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=4.2e-05 Score=73.89 Aligned_cols=115 Identities=17% Similarity=0.045 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc------ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF------NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ- 629 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~------gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~- 629 (775)
.+..+..+|..+...|+|++|++.+++++.+.... ......+.++.++|.++...|++++|+..+.+||.+..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 56778899999999999999999999999976652 11112455999999999999999999999999999832
Q ss_pred HhCCcHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc
Q 004081 630 LLNLDLLKASAT----LTLAELWLSFGPNHAKMASNLIQQALPLILGH 673 (775)
Q Consensus 630 ~~g~~~~~A~al----~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~ 673 (775)
........+.++ .++|.++..+|+. ++|+..++.++.+.-+.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~--eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRG--AEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCH--HHHHHHHHHHHhcCCCc
Confidence 222233445666 9999999999998 99999999999886443
No 128
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.08 E-value=6.2e-05 Score=66.59 Aligned_cols=105 Identities=10% Similarity=-0.047 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh-CCcH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLDL 635 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~-g~~~ 635 (775)
.+.++..+|.++...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+++.+.... ....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 45678899999999999999999999998742 2346788999999999999999999999999998765 3344
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
....+...+|.++..+|+. ++|...++.++..
T Consensus 77 ~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKY--KDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHh
Confidence 4478889999999999998 9999999999875
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.07 E-value=6.9e-05 Score=80.65 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc---h------H--HH-HHHHhhHHHHHHhcCCHHHHHHHHHH
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---S------R--IL-LLKLQLLHERSLHRGHLKLAQKVCDE 541 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~---~------~--~~-~l~l~l~~~~al~~G~~~~A~~~l~~ 541 (775)
..+.++.++|..+..+|+|++|...++++....|.... . . .. ...++ ..++..|+|.+|...+++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla---~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA---MCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHH
Confidence 35678899999999999999999999999999887641 0 0 01 11222 478889999999999999
Q ss_pred HhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhH-HHH
Q 004081 542 LGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLG-IPY 620 (775)
Q Consensus 542 ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~A-l~~ 620 (775)
++.+.+ . ...++++++.++...|++++|+..+++++.+. .....++..++.++...|++.+| ...
T Consensus 222 al~~~p-------~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 222 ALELDS-------N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY------PNNKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp HHHHCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC-------C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998733 2 35688999999999999999999999998742 23356888999999999999887 444
Q ss_pred HHHHHH
Q 004081 621 ALASLS 626 (775)
Q Consensus 621 l~~AL~ 626 (775)
+.+.+.
T Consensus 288 ~~~~~~ 293 (336)
T 1p5q_A 288 YANMFE 293 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.06 E-value=6.4e-05 Score=71.13 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~ 633 (775)
....+..+..++.++...|+|++|++.+++++... .....++..+|.++...|++++|+..+.+++.+...
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--- 77 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--- 77 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---
Confidence 34577889999999999999999999999999743 234788999999999999999999999999998542
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCC
Q 004081 634 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG 675 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~ 675 (775)
...++..+|.++..+|+. ++|+..+++++...-....
T Consensus 78 ---~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 78 ---YSKAWSRLGLARFDMADY--KGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ---CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHSSSCC
T ss_pred ---CHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCchH
Confidence 257888999999999998 9999999999998876666
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=3.3e-05 Score=83.13 Aligned_cols=140 Identities=15% Similarity=0.034 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc---------chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL---------QVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd---------~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
.+.++..+|.++...|+|++|+..+++++.......+ ....+.++..+|.++...|++++|+..+.+|+.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999986543321 1223688999999999999999999999999998
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH-H
Q 004081 628 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV-L 706 (775)
Q Consensus 628 a~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~A-l 706 (775)
... .+.++..+|.++..+|+. ++|+..++.++.+--. + ..++..++.++.. .|++.+| .
T Consensus 226 ~p~------~~~a~~~lg~~~~~~g~~--~~A~~~~~~al~l~P~--~----~~a~~~l~~~~~~------~~~~~~a~~ 285 (336)
T 1p5q_A 226 DSN------NEKGLSRRGEAHLAVNDF--ELARADFQKVLQLYPN--N----KAAKTQLAVCQQR------IRRQLAREK 285 (336)
T ss_dssp CTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCSS--C----HHHHHHHHHHHHH------HHHHHHHHH
T ss_pred CCC------cHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHH------HHHHHHHHH
Confidence 532 357889999999999998 9999999999876422 2 3577888888887 7777666 4
Q ss_pred HHHHHHHHHH
Q 004081 707 DPLRQASEEL 716 (775)
Q Consensus 707 ~~L~~Al~~f 716 (775)
..+++.+..+
T Consensus 286 ~~~~~~~~~~ 295 (336)
T 1p5q_A 286 KLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4555554443
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.06 E-value=3e-05 Score=71.05 Aligned_cols=91 Identities=10% Similarity=-0.032 Sum_probs=77.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|...+++++.+.+ . ...++..+|.++..+|++++|++.+++++.+ ......++..
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p-------~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~ 86 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDP-------E-NAILYSNRAACLTKLMEFQRALDDCDTCIRL------DSKFIKGYIR 86 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh------hhhhhHHHHH
Confidence 367888999999999999888632 2 3568899999999999999999999999974 2334778999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+|.++...|++++|+..+.+++.+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999885
No 133
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=4.8e-05 Score=73.46 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=85.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCC---Ch-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc-chhHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGV---DM-DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENA 598 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~---D~-~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd-~~~~a 598 (775)
...+..|+|.+|...|++++.+.+..... +. ...+.++.+++.++..+|+|++|+..+++++.++.+.+. .....
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence 36778899999999999999986542110 10 013458999999999999999999999999997554333 34556
Q ss_pred HHH----HHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 599 SVL----LLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 599 ~aL----l~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
.++ .++|.++...|++++|+..+.+|+++.-+
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 777 99999999999999999999999999743
No 134
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.02 E-value=0.00011 Score=82.40 Aligned_cols=128 Identities=9% Similarity=-0.036 Sum_probs=102.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-cc-cchhHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVL 601 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-~g-d~~~~a~aL 601 (775)
.....+|+|++|..++++++.+...+-+.+-...+.++.+++.++..+|+|++|+.++++++...++ .| +.+..+..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 4566889999999999999987655433343447888999999999999999999999999998776 33 355668899
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHh-CCc-HHHHHHHHHHHHHHHHc
Q 004081 602 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLD-LLKASATLTLAELWLSF 651 (775)
Q Consensus 602 l~lA~i~~~~G~~~~Al~~l~~AL~la~~~-g~~-~~~A~al~~La~l~l~l 651 (775)
.++|.+|...|++++|+.++.+|+++-... |.+ ...+.++..|+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998544 443 34555556666665443
No 135
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=5.9e-05 Score=66.74 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc-CC
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GG 675 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~-G~ 675 (775)
.+.++..+|.++...|+++.|+..+.+++.+... ...+...+|.++...|+. ++|...++.++...... ++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDY--NKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhccccchh
Confidence 3677899999999999999999999999987532 256778899999999998 99999999999987664 55
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 676 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 676 ~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
......++..+|.++.. .|++.+|+.+++++++..
T Consensus 75 ~~~~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFK------EEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhC
Confidence 55668899999999999 999999999999999854
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.01 E-value=0.00013 Score=64.33 Aligned_cols=121 Identities=15% Similarity=-0.005 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
....++..+|..+...|+|++|...++.+....|.. ...+ ..++ ..+...|++.+|...+.++..+.+ +
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~-~~~a---~~~~~~~~~~~A~~~~~~~~~~~~-----~ 78 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYF-CNRA---AAYSKLGNYAGAVQDCERAICIDP-----A 78 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH-HHHH---HHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHH-HHHH---HHHHHhhchHHHHHHHHHHHhcCc-----c
Confidence 456778888888888899999999888888776532 1111 1122 356778888888888888887632 1
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCCh
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA 614 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~ 614 (775)
...++..++.++...|++++|+..+++++... .....++..++.++...|++
T Consensus 79 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 ---YSKAYGRMGLALSSLNKHVEAVAYYKKALELD------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTTC
T ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHHhcC
Confidence 24567888888888888888888888887642 22345677778888777765
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=7e-06 Score=80.49 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchh----------HHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE----------NASVLLLLAEIHKKSGNAVLGIPYALASL 625 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~----------~a~aLl~lA~i~~~~G~~~~Al~~l~~AL 625 (775)
..+..+..+|..+...|+|++|++.+++++.......+... ...++..+|.++...|+++.|+..+.+++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 36678889999999999999999999999986543322111 25789999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 626 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 626 ~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
.+.. ....++..+|.++..+|+. ++|+..++.++..--. + ..++..++.++..
T Consensus 116 ~~~p------~~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 116 KIDK------NNVKALYKLGVANMYFGFL--EEAKENLYKAASLNPN--N----LDIRNSYELCVNK 168 (198)
T ss_dssp HHST------TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHSTT--C----HHHHHHHHHHHHH
T ss_pred HhCc------ccHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHCCC--c----HHHHHHHHHHHHH
Confidence 8843 2357788899999999998 9999999999876321 1 3455566665554
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.99 E-value=0.00011 Score=70.00 Aligned_cols=102 Identities=8% Similarity=-0.068 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
.+...++.++|..+...|+|++|...++++...-|.. ...|. .++ ..+...|+|++|...+++++.+.+.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~-~lg---~~~~~~g~~~~Ai~~~~~al~l~P~---- 102 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIM-GLA---AIYQIKEQFQQAADLYAVAFALGKN---- 102 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH-HHH---HHHHHTTCHHHHHHHHHHHHHHSSS----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH-HHH---HHHHHHccHHHHHHHHHHHHhhCCC----
Confidence 3456778889999989999999999999888776632 22222 222 2577888999999999888887331
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 588 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~ 588 (775)
+ ..+++++|.++...|++++|++.+++++...
T Consensus 103 ~----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 D----YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp C----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 3578888888889999999999888888754
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.99 E-value=7.8e-05 Score=66.42 Aligned_cols=121 Identities=14% Similarity=0.009 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
......++..+|..+...|+|++|...++++....|.. ... ...++ ..+...|++++|...++++..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~-~~~la---~~~~~~~~~~~A~~~~~~a~~~~~---- 81 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKL-YSNRA---ACYTKLLEFQLALKDCEECIQLEP---- 81 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHH-HHHHH---HHHTTTTCHHHHHHHHHHHHHHCT----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHH-HHHHH---HHHHHhccHHHHHHHHHHHHHhCC----
Confidence 34556778888888888888888888888877665432 111 11222 256677888888888888877532
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG 612 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G 612 (775)
+ ...+...++.++...|++++|++.+++++.... ....++..++.++...|
T Consensus 82 -~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 82 -T---FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS------SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG------GGTHHHHHHHHHHHHHT
T ss_pred -C---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhc
Confidence 1 245677788888888888888888887776321 22445666666666554
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.98 E-value=9.4e-05 Score=68.48 Aligned_cols=102 Identities=15% Similarity=0.033 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
...+++.++..+...|+|++|++.+++++.. .+....++..+|.++...|+++.|+..+.+++.+....
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 85 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE----- 85 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----
Confidence 4678889999999999999999999999863 23457788999999999999999999999999885322
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
..+...+|.++..+|+. ++|+..++.++...-.
T Consensus 86 -~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 86 -PRFPFHAAECHLQLGDL--DGAESGFYSARALAAA 118 (142)
T ss_dssp -THHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHT
T ss_pred -cHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC
Confidence 35678899999999998 9999999999877643
No 141
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.95 E-value=7.1e-05 Score=83.95 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=90.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-cc-cchhHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVLL 602 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-~g-d~~~~a~aLl 602 (775)
.....|+|++|..++++++.+...+-+.+-...+.++.+++.++..+|+|++|+.++++++.+..+ .| +....+..+.
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 455679999999999999998766444443447888999999999999999999999999998775 33 3556688999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 603 LLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 603 ~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
++|.+|...|++++|+.++.+|+++...
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999854
No 142
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=9.7e-05 Score=69.71 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=92.7
Q ss_pred chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCC------------cHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 004081 594 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL------------DLLKASATLTLAELWLSFGPNHAKMASN 661 (775)
Q Consensus 594 ~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~------------~~~~A~al~~La~l~l~lG~~~f~~Al~ 661 (775)
....+..+..+|..+...|++..|+..+.+|+.+...... ....+.++..+|.++..+|+. ++|+.
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~--~~A~~ 84 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL--HEAEE 84 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH--HHHHH
Confidence 4456788999999999999999999999999999654322 455678889999999999998 99999
Q ss_pred HHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 662 LIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 662 lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
.++.++.+-- .-+.+++.+|.++.. .|++++|+..+++|++..
T Consensus 85 ~~~~al~~~p------~~~~a~~~~g~~~~~------~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 85 TSSEVLKREE------TNEKALFRRAKARIA------AWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHST------TCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCC------cchHHHHHHHHHHHH------HhcHHHHHHHHHHHHhcC
Confidence 9999987632 235789999999999 999999999999999873
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.94 E-value=9.4e-05 Score=69.96 Aligned_cols=110 Identities=9% Similarity=-0.047 Sum_probs=94.4
Q ss_pred ccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 004081 592 NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 592 gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il 671 (775)
+.....+.++..+|.++...|++++|+..+.+++.+... .+.++..+|.++..+|+. ++|+..++.++..--
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQH--EKAAEDAELATVVDP 76 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCC
Confidence 445567889999999999999999999999999998642 257888999999999998 999999999987742
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccC
Q 004081 672 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 721 (775)
Q Consensus 672 ~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~ 721 (775)
. ...+++.+|.++.. .|++++|+.++++|++..-....
T Consensus 77 ~------~~~~~~~lg~~~~~------~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 77 K------YSKAWSRLGLARFD------MADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp T------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHSSSCC
T ss_pred C------CHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhCCCchH
Confidence 2 26789999999999 99999999999999998755544
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.92 E-value=0.00011 Score=65.54 Aligned_cols=118 Identities=11% Similarity=-0.006 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
.....++..++..+...|++++|++.+++++.. ......++..+|.++...|++++|+..+.+++.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---- 82 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---- 82 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----
Confidence 346788999999999999999999999999862 2334788999999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
...+...+|.++..+|+. ++|+..+++++...-.. ..++..++.++..
T Consensus 83 --~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~ 130 (133)
T 2lni_A 83 --FIKGYTRKAAALEAMKDY--TKAMDVYQKALDLDSSC------KEAADGYQRCMMA 130 (133)
T ss_dssp --CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCGGG------THHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH
Confidence 356788899999999998 99999999998764332 2455666666554
No 145
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.90 E-value=0.0022 Score=70.66 Aligned_cols=210 Identities=13% Similarity=0.038 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHH-HhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERS-LHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~a-l~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
.++..||..+..+|++++-..++....+-|...+.+...-+--.++ +.. -.-|..+.-.+++.....-+..-. -.-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~--r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLV-DMFLDMDAGTGIEVQLCKDCIEWAKQEK--RTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTT--CHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHHHHHH--HHH
Confidence 6789999999999999999999999988888777765322210110 111 112444444455555544332100 111
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh-CCc
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLD 634 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~-g~~ 634 (775)
.....-.+++.++...|+|.+|++.+.+++..|.+..|...-..++..-.++|...|+..++...+.+|...+... ..+
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 1223455899999999999999999999999999988888889999999999999999999999999999998776 778
Q ss_pred HHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHhHHHhcCCHHH-HHHHHHHHHHhhh
Q 004081 635 LLKASATLTLAELWL-SFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLL 691 (775)
Q Consensus 635 ~~~A~al~~La~l~l-~lG~~~f~~Al~lLe~aLp~il~~G~~~l-~A~a~~~LAr~~l 691 (775)
...+.....-|.++. ..++. ..|...|-++....-+.|+... ....|..|+.+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdy--k~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~ 233 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDF--KTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML 233 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHhccCH--HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc
Confidence 888888887777776 56665 9999999999888877777543 3334555554443
No 146
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=0.00017 Score=64.43 Aligned_cols=102 Identities=13% Similarity=0.020 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhH
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 557 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~ 557 (775)
++..+|..+...|+|++|...++.+....|...........++ ..++..|++++|...+.+++...+ +....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg---~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~ 75 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLG---ESYYATRNFQLAEAQFRDLVSRYP-----THDKA 75 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHCT-----TSTTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHH---HHHHHhccHHHHHHHHHHHHHHCC-----CCccc
Confidence 4678889999999999999999999998876543221122222 367889999999999999998744 21124
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCM 587 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~ 587 (775)
..+++.++.++...|++++|+..+++++..
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999998874
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.88 E-value=0.00026 Score=61.76 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
..++..+|..+...|++++|...++++....|.. ...+ ..++ ..+...|++++|...+.++..+.+ .+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~-~~la---~~~~~~~~~~~A~~~~~~~~~~~~----~~-- 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAW-YNLG---NAYYKQGDYDEAIEYYQKALELDP----NN-- 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH-HHHH---HHHHHTTCHHHHHHHHHHHHHHCT----TC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHH-HHHH---HHHHHhCCHHHHHHHHHHHHHhCC----cc--
Confidence 4566777777777778888877777777665421 1111 1111 245667777777777777766422 12
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS 611 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~ 611 (775)
..++..++.++...|++++|+..+++++... .....++..++.++...
T Consensus 77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhc
Confidence 3456667777777777777777777766531 12234555555555443
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.88 E-value=0.00016 Score=70.68 Aligned_cols=128 Identities=12% Similarity=-0.048 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH------------HHHH-HHhhHHHHHHhcCCHHHHHHHHH
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR------------ILLL-KLQLLHERSLHRGHLKLAQKVCD 540 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~------------~~~l-~l~l~~~~al~~G~~~~A~~~l~ 540 (775)
..+..+..+|..+..+|+|++|...++++....|...... .... .++ ..++..|+|.+|...+.
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la---~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA---TCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH---HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCHHHHHHHHH
Confidence 3456788899999999999999999999999877654210 0111 122 46788999999999999
Q ss_pred HHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHH
Q 004081 541 ELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 618 (775)
Q Consensus 541 ~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al 618 (775)
+++.+.+ + ...+++++|.++...|++++|++.+++++... .....++..++.++...|+..++.
T Consensus 113 ~al~~~p-----~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 113 KVLKIDK-----N---NVKALYKLGVANMYFGFLEEAKENLYKAASLN------PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHST-----T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCc-----c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9998732 1 35678999999999999999999999998742 233567777888888777776665
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.88 E-value=9.5e-05 Score=70.55 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=100.3
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
.+..|++++|...+.+++...+ + ...++..+|.++...|++++|+..+++++.... ....++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-----~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-----Q---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG------ENAELYAALA 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-----S---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC------SCHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCC-----C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHH
Confidence 3567899999999999888632 1 246889999999999999999999999987542 2367888999
Q ss_pred HH-HHhcCCh--hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcC
Q 004081 606 EI-HKKSGNA--VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 674 (775)
Q Consensus 606 ~i-~~~~G~~--~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G 674 (775)
.+ +...|++ +.|+..+.+++.+... ...+...+|.++...|+. ++|...++.++...-...
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSN------EITALMLLASDAFMQANY--AQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTCCTTS
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcccH--HHHHHHHHHHHhhCCCCc
Confidence 99 8899999 9999999999987432 246778899999999998 999999999987754443
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.87 E-value=0.00035 Score=64.59 Aligned_cols=102 Identities=13% Similarity=-0.039 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
+...++..+|..+...|+|++|...++.+....|.. ...|. .++ ..+...|++.+|...+++++.+.+ .+
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~-~lg---~~~~~~g~~~~A~~~~~~al~~~p----~~ 85 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFL-GLG---ACRQSLGLYEQALQSYSYGALMDI----NE 85 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH-HHH---HHHHHTTCHHHHHHHHHHHHHHCT----TC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHH-HHH---HHHHHHhhHHHHHHHHHHHHhcCC----CC
Confidence 456778899999999999999999999998876532 22222 222 367889999999999999998733 12
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
..+++.++.++...|++++|++.+++++....
T Consensus 86 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 86 ----PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35678899999999999999999999988654
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.86 E-value=8.3e-05 Score=65.61 Aligned_cols=101 Identities=15% Similarity=0.046 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
.....++..++..+...|++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---- 78 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc----
Confidence 3345555666666666666666666666665521 122455566666666666666666666666554211
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 635 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
...+...+|.++..+|+. ++|...+++++..
T Consensus 79 --~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 79 --YSKAYGRMGLALSSLNKH--VEAVAYYKKALEL 109 (131)
T ss_dssp --CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhCCH--HHHHHHHHHHHhc
Confidence 133445556666666655 6666666655544
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.82 E-value=0.00038 Score=65.41 Aligned_cols=102 Identities=18% Similarity=0.067 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
+...++.++|..+..+|+|++|...++.+...-|.. ...|. .++ ..+...|+|++|...+++++.+.+ .+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~-~lg---~~~~~~g~~~~A~~~~~~al~l~p----~~ 88 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFL-GLG---ACRQAMGQYDLAIHSYSYGAVMDI----XE 88 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH-HHH---HHHHHTTCHHHHHHHHHHHHHHST----TC
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHH-HHH---HHHHHHhhHHHHHHHHHHHHhcCC----CC
Confidence 456778899999999999999999999988876532 22222 232 367889999999999999998733 12
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
..+++.+|.++...|++++|++.+++++....
T Consensus 89 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 89 ----PRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999988654
No 153
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.80 E-value=0.00056 Score=85.25 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=121.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHH
Q 004081 482 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 561 (775)
Q Consensus 482 LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~ 561 (775)
+|..+...|.|+||..+++.+.. + ...... .....|+|++|.+++.+.. ...++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-~---------~~A~~V---Lie~i~nldrAiE~Aervn-------------~p~vW 1108 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-N---------TSAVQV---LIEHIGNLDRAYEFAERCN-------------EPAVW 1108 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-H---------HHHHHH---HHHHHhhHHHHHHHHHhcC-------------CHHHH
Confidence 36666777888888887775421 0 001111 1125566777766666441 24567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH----
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK---- 637 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~---- 637 (775)
..+|..+...|++.+|++.+.++ .....+..+|.++.+.|+++.|+.++..|....+....+...
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 78888888888888888877554 124455667777778888887777776555433111000000
Q ss_pred -----------------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 004081 638 -----------------ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 700 (775)
Q Consensus 638 -----------------A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g 700 (775)
......+|..+...|.. ++|..++..+ ..|..+|+|+.. .|
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y--eeA~~~Y~kA--------------~ny~rLA~tLvk------Lg 1235 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY--DAAKLLYNNV--------------SNFGRLASTLVH------LG 1235 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH--HHHHHHHHhh--------------hHHHHHHHHHHH------hC
Confidence 01233456666666655 6666666663 467777888888 78
Q ss_pred ChHHHHHHHHHHHHHHH------------------hccC-HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 701 NPEAVLDPLRQASEELQ------------------VLED-HELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 701 ~~~~Al~~L~~Al~~f~------------------~l~~-~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
++..|++..++|...-. ..+- .....+-+..++..|...|..+++..
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888777643211 0010 00123345567777888888877765
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.80 E-value=0.00017 Score=63.00 Aligned_cols=119 Identities=20% Similarity=0.116 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
||.....++..++.++...|++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-- 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-- 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--
Confidence 444467888999999999999999999999998742 233678899999999999999999999999876421
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhh
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 691 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~l 691 (775)
...+...+|.++...|+. ++|...+++++...- .+ ..++..+|.++.
T Consensus 76 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~ 122 (125)
T 1na0_A 76 ----NAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDP--NN----AEAKQNLGNAKQ 122 (125)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT--TC----HHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHH
Confidence 245677899999999998 999999999976532 11 234555555543
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.80 E-value=5.1e-05 Score=68.88 Aligned_cols=97 Identities=13% Similarity=0.018 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
...+.+|..++..|++++|+..+++++.. ......++..+|.++...|++++|+..+.+|+.+.-. ..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~ 85 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DI 85 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Confidence 34678899999999999999999999873 2345788999999999999999999999999998542 24
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 639 SATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 639 ~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
.++..||.++..+|+. ++|+..+++++..
T Consensus 86 ~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNA--NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHh
Confidence 5778899999999998 9999999998764
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.78 E-value=0.00014 Score=65.77 Aligned_cols=102 Identities=16% Similarity=0.037 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
....+..+|..+...|+|++|+..+++++... .....++..+|.++...|+++.|+..+.+++.+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------ 75 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------ 75 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------
Confidence 45788999999999999999999999998743 234678999999999999999999999999987532
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
...+...+|.++..+|+. ++|+..++.++...-.
T Consensus 76 ~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESY--DEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHChh
Confidence 356788999999999998 9999999999887654
No 157
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00071 Score=60.26 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=80.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|...+.++....+ +......+.+.+|.++...|++++|++.+++++... .+......++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHHH
Confidence 367889999999999999988644 222245789999999999999999999999998742 122234778999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+|.++...|+++.|+..+.+++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999988764
No 158
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.76 E-value=0.00015 Score=69.21 Aligned_cols=124 Identities=15% Similarity=0.042 Sum_probs=92.5
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHH
Q 004081 487 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 566 (775)
Q Consensus 487 a~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ 566 (775)
...|+|++|...++.+....|.. ...+. .++ ..++..|++++|...+.+++.+.+. + ..+...++.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~-~lg---~~~~~~~~~~~A~~~~~~al~~~p~----~----~~~~~~la~ 86 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQN--SEQWA-LLG---EYYLWQNDYSNSLLAYRQALQLRGE----N----AELYAALAT 86 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSC--HHHHH-HHH---HHHHHTTCHHHHHHHHHHHHHHHCS----C----HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCc--HHHHH-HHH---HHHHHcCCHHHHHHHHHHHHHcCCC----C----HHHHHHHHH
Confidence 34788999999999988876532 22222 222 3678899999999999999987431 2 457788888
Q ss_pred H-HHHcCCh--HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 567 T-LLAANQF--SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 567 l-l~~~Gd~--~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
+ +...|++ ++|+..+++++... .....++..+|.++...|+++.|+..+.+++.+...
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALD------SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 8 7899999 99999999998742 233678889999999999999999999999887643
No 159
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.76 E-value=0.00014 Score=79.49 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.+..+..+|..+...|+|++|++.+++++..+.... ..-. ..........
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~~-------------~~~~~~~~~~ 271 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAE-------------DADGAKLQPV 271 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSC-------------HHHHGGGHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------cccC-------------hHHHHHHHHH
Confidence 455556666666666666666666666665433210 0000 0011124455
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 716 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f 716 (775)
.+.++..+|.++..+|+. ++|+..+++++..-- ..+.+++.+|.++.. .|++++|+.++++|++..
T Consensus 272 ~~~~~~nla~~~~~~g~~--~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~------~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDW--QGAVDSCLEALEIDP------SNTKALYRRAQGWQG------LKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCH--HHHHHHHHHHHHhCc------hhHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhC
Confidence 678888999999999998 999999999987531 246789999999999 999999999999999864
Q ss_pred HhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 717 QVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 717 ~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
-. -..+...++.++..+|+..++.+
T Consensus 338 P~------~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 338 PE------DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 34677888888888888877765
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.75 E-value=8.2e-05 Score=77.79 Aligned_cols=102 Identities=16% Similarity=0.055 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
+.++..+|..+...|+|++|...++.+....|.. ... ...++ ..++..|+|++|...+++++.+.+ .
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~-~~~la---~~~~~~~~~~~A~~~~~~al~~~p-------~ 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVY-YTNRA---LCYLKMQQPEQALADCRRALELDG-------Q 70 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHH-HHHHH---HHHHHTTCHHHHHHHHHHHTTSCT-------T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc--HHH-HHHHH---HHHHHhcCHHHHHHHHHHHHHhCC-------C
Confidence 4678899999999999999999999999887642 111 12222 367899999999999999988632 1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF 591 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~ 591 (775)
...+++++|.++...|++++|+..+++++......
T Consensus 71 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 71 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 35688999999999999999999999999876543
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.75 E-value=0.00044 Score=62.38 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=80.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|...+.+++.+.+ + ...++..++.++...|++++|+..+++++... .....++..
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~ 82 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNP-----L---VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQSVKAHFF 82 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCc-----C---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------chhHHHHHH
Confidence 367888999999999999888633 1 24689999999999999999999999998742 335778999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
+|.++...|+++.|+..+.+++.+....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 9999999999999999999999998763
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.74 E-value=0.00011 Score=76.71 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=82.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|...+.+++.+.+ + ...++.++|.++...|++++|++.+++++. .......++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~ 77 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNP-----L---VAVYYTNRALCYLKMQQPEQALADCRRALE------LDGQSVKAHFF 77 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SCTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-----c---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCCCCHHHHHH
Confidence 367899999999999999998733 1 356789999999999999999999999985 23455788999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
+|.++...|++++|+..+.+++.+.....
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999999987653
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.74 E-value=0.00059 Score=58.90 Aligned_cols=97 Identities=12% Similarity=-0.040 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
+.++..+|..+...|+|++|...++.+....|.. ... ...++ ..++..|++.+|...+.++..+.+ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~-~~~~a---~~~~~~~~~~~A~~~~~~~~~~~~-----~-- 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVL-YSNRS---AAYAKKGDYQKAYEDGCKTVDLKP-----D-- 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH-HHHHH---HHHHHHTCHHHHHHHHHHHHHHCT-----T--
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHH-HHHHH---HHHHhhccHHHHHHHHHHHHHhCc-----c--
Confidence 4556677777777777777777777777665432 111 11121 245566777777777777766522 1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
...+...++.++...|++++|.+.+++++.
T Consensus 71 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 71 -WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 234566677777777777777777766664
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.73 E-value=9.9e-05 Score=66.95 Aligned_cols=91 Identities=16% Similarity=0.005 Sum_probs=75.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.++..|++.+|...+++++.+.+ . ...+++.+|.++...|++++|+..+++++... .....++..+
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~~~~~l 91 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEP-------E-REEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIAVHAAL 91 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Confidence 67789999999999999988633 2 35788999999999999999999999998742 2346788999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
|.++...|++++|+..+.+++.+.-
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999987653
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.00033 Score=78.72 Aligned_cols=129 Identities=15% Similarity=0.039 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc---h------H--HHH-HHHhhHHHHHHhcCCHHHHHHHHHH
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---S------R--ILL-LKLQLLHERSLHRGHLKLAQKVCDE 541 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~---~------~--~~~-l~l~l~~~~al~~G~~~~A~~~l~~ 541 (775)
..+.++.++|..+..+|+|++|...++++....|.... . . ... ..++ ..++..|+|.+|...+.+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla---~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA---MCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH---HHHHHhcCHHHHHHHHHH
Confidence 44677889999999999999999999999998876531 0 0 111 1122 367788888888888888
Q ss_pred HhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHH
Q 004081 542 LGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP 619 (775)
Q Consensus 542 ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~ 619 (775)
++.+.+ . ...++++++.++..+|+|++|+..+++++.+ ......++..++.++...|++.++..
T Consensus 343 al~~~p-------~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 343 ALGLDS-------A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHST-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCC-------c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888632 1 3567888888888888888888888888753 23335677778888888877766643
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.72 E-value=0.00012 Score=82.45 Aligned_cols=92 Identities=18% Similarity=0.133 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 004081 636 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 715 (775)
Q Consensus 636 ~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~ 715 (775)
..+.++..+|.++..+|+. ++|+..++.++..--. ...+++.+|.++.. .|++++|+.++++|++.
T Consensus 315 ~~~~~~~nla~~~~~~g~~--~~A~~~~~~al~~~p~------~~~a~~~~g~a~~~------~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREY--TKAVECCDKALGLDSA------NEKGLYRRGEAQLL------MNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHSTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCc------cHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHh
Confidence 3467788899999999998 9999999999886422 36789999999999 99999999999999875
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004081 716 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 747 (775)
Q Consensus 716 f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~ 747 (775)
.- .-..++..++.++..+|+..++.+
T Consensus 381 ~P------~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 381 NP------QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 334788899999999999888765
No 167
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.72 E-value=0.0005 Score=76.89 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhh-cCchHHHHHH-HhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~-~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
..+...-+..+|+|++|...+++++++... ++..+...+. +..++..+..+|+|++|..++.+++.+...+-+.+-..
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 334444556799999999999999987544 3444333332 33333578899999999999999999887644444444
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc-cc-chhHHHHHHHHHHHHHh
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-NL-QVENASVLLLLAEIHKK 610 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~-gd-~~~~a~aLl~lA~i~~~ 610 (775)
.+..++++|.++..+|++++|+.++++++++.... |. .+....++..+++++..
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999987753 43 34456677777777654
No 168
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.71 E-value=0.0054 Score=67.63 Aligned_cols=206 Identities=9% Similarity=-0.010 Sum_probs=161.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA-ANQFSEAAAVAHSLFCMCYKFNLQVENASVLL 602 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~-~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl 602 (775)
+.+...|++++-.+++.++...+..+...- .+.....+...... -|..+.-.++..++++.|+.......+.++-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kak---~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~ 103 (394)
T 3txn_A 27 ELYKQEGKAKELADLIKVTRPFLSSISKAK---AAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHTCHHHHHHHHHHTTTGGGGSCHHH---HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999988877655111 22333334444322 46667777888888888886544444566778
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc-CCHHHHHH
Q 004081 603 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GGLELRAR 681 (775)
Q Consensus 603 ~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~-G~~~l~A~ 681 (775)
.+|.+|...|++.+|+..+.+.+.-+....+.....++...-..++..+|.. .++...+..+....-.. .++..+|.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~--~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL--PKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 9999999999999999999999999988888888888888899999999987 99999999998777665 88999999
Q ss_pred HHHHHHHhhh-cCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCC
Q 004081 682 AFIAEAKCLL-SDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGR 741 (775)
Q Consensus 682 a~~~LAr~~l-A~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd 741 (775)
....-|..++ . .+++.+|..++-+|++.|..++.+.. ..++..++.+-...++
T Consensus 182 i~~~~Gi~~l~~------~rdyk~A~~~F~eaf~~f~~~~~~~~-~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAAD------ERDFKTAFSYFYEAFEGFDSVDSVKA-LTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHT------TSCHHHHHHHHHHHHHHHTTTCHHHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHh------ccCHHHHHHHHHHHHhcccccccHHH-HHHHHHHHHHHHHcCC
Confidence 9999999999 8 99999999999999999999887654 3333334444444444
No 169
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=1.3e-05 Score=69.80 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.+.++..+|..+...|+|++|++.+++++... .....++..+|.++...|++++|+..+.+++.+....+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 45678899999999999999999999999742 234778999999999999999999999999998877667777
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQ 665 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~ 665 (775)
...++..+|.++..+|.. +.|+..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~--~~a~~~~~~ 103 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSV--QIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHCC--CCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhH--hhhHhHHHH
Confidence 788899999999999987 666554443
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.67 E-value=0.00035 Score=60.40 Aligned_cols=100 Identities=8% Similarity=-0.047 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
.+..+..++..+...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------ 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------
Confidence 45678899999999999999999999998742 234678999999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
...+...+|.++..+|+. ++|...++.++...
T Consensus 71 ~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRF--EEAKRTYEEGLKHE 102 (118)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHcC
Confidence 246778899999999998 99999999997653
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00049 Score=75.27 Aligned_cols=127 Identities=12% Similarity=0.039 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcC-----------chH-HHH-HHHhhHHHHHHhcCCHHHHHHHHHH
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-----------KSR-ILL-LKLQLLHERSLHRGHLKLAQKVCDE 541 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~-----------~~~-~~~-l~l~l~~~~al~~G~~~~A~~~l~~ 541 (775)
.+..+.++|..+..+|+|++|+..++.+.+..+... ... ... ..++ ..++..|+|++|...+++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla---~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG---ACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHH---HHHHhccCHHHHHHHHHH
Confidence 456688899999999999999999999998665421 111 111 1222 367788888888888888
Q ss_pred HhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHH
Q 004081 542 LGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 618 (775)
Q Consensus 542 ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al 618 (775)
++.+.+ . ...++++++.++..+|++++|++.+++++.+.. ....++..++.++...++..++.
T Consensus 299 al~~~p-------~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P------~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 299 ALEIDP-------S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP------EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCc-------h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 887522 1 356788888888888888888888888886422 23456666777776666665543
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.62 E-value=4.1e-05 Score=86.79 Aligned_cols=175 Identities=14% Similarity=-0.029 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
.+.++.++|..+..+|+|++|...++++.+..|.. ...+ ..++ ..+...|+|++|...+++++.+.+
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~--~~~~-~~lg---~~~~~~g~~~~A~~~~~~al~l~p------- 71 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYY-GNRS---LAYLRTECYGYALGDATRAIELDK------- 71 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHH-HHHH---HHHHHTTCHHHHHHHHHHHHHSCT-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHH-HHHH---HHHHHhcCHHHHHHHHHHHHHhCC-------
Confidence 34455667777888999999999999999886543 1111 1222 367899999999999999998632
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH--HHhcCChhhHHHHHH----------
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI--HKKSGNAVLGIPYAL---------- 622 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i--~~~~G~~~~Al~~l~---------- 622 (775)
. ...+++++|.++..+|++++|++.+++++.... .. ..++..++.+ +...|++++|+..+.
T Consensus 72 ~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p----~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 72 K-YIKGYYRRAASNMALGKFRAALRDYETVVKVKP----HD--KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TC--TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC--HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 1 356889999999999999999999999997522 12 2244444555 888999999999988
Q ss_pred -HHHHHHHHhCCcH-----HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 623 -ASLSFCQLLNLDL-----LKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 623 -~AL~la~~~g~~~-----~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
+++.+......+. .....+..+.+.+...+...-..+..++..+...
T Consensus 145 ~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~ei 197 (477)
T 1wao_1 145 IESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEV 197 (477)
T ss_dssp TSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 5555443222111 1112222344444444444335555566666433
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=0.00054 Score=62.15 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCC
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
.....+..+|..+...|+|++|...++.+.+..|...........++ ..++..|++.+|...+.+++.+.+ +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~A~~~~~~~~~~~~-----~ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRA---ACHLKLEDYDKAETEASKAIEKDG-----G 97 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHTS-----C
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHH---HHHHHHccHHHHHHHHHHHHhhCc-----c
Confidence 34677888898998999999999999988876542111011111222 357788899999998888887632 1
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 587 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~ 587 (775)
...+++.++.++...|++++|+..+++++..
T Consensus 98 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 ---DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2467788888888899999999888888763
No 174
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.00056 Score=76.64 Aligned_cols=116 Identities=14% Similarity=-0.005 Sum_probs=96.4
Q ss_pred HhcCChhhHHHHHHHHHHHHHH-hCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc--CCHHHHHHHHH
Q 004081 609 KKSGNAVLGIPYALASLSFCQL-LNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH--GGLELRARAFI 684 (775)
Q Consensus 609 ~~~G~~~~Al~~l~~AL~la~~-~g~-~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~--G~~~l~A~a~~ 684 (775)
...|++++|+..+.++|++..+ .|. ....+.++.+||.++..+|+. ++|+.+++++|...... .+-...|..++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~--~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW--EGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3678999999999999999843 333 456788899999999999998 99999999999998664 45678899999
Q ss_pred HHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHH
Q 004081 685 AEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL--EDHELAAEAFYLI 732 (775)
Q Consensus 685 ~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l--~~~~~~~evl~~L 732 (775)
.||.++.. .|++++|+.++++|+++++.. .++...+++...|
T Consensus 387 nLa~~~~~------qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 387 KLGRLYMG------LENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHh------ccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99999999 999999999999999999865 3455555554433
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.60 E-value=0.0032 Score=67.19 Aligned_cols=169 Identities=17% Similarity=0.073 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh----
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM---- 554 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~---- 554 (775)
+.-+|.++...|++++|+.++.+....-+....-....+.. ..++..|+.+.|.+.++.+... ++
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~v----qi~L~~~r~d~A~k~l~~~~~~-------~~d~~~ 171 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAI----EVALLNNNVSTASTIFDNYTNA-------IEDTVS 171 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHH-------SCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHH----HHHHHCCCHHHHHHHHHHHHhc-------Cccccc
Confidence 45889999999999999999998754332111112222222 5789999999999999998775 33
Q ss_pred -hhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 555 -DLKTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 555 -~~~~~a~~~~a~ll~~~G--d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
+-...+.+..+++.+..| ++.+|+..++++... .++ ......++. ++.+.|++++|...+.+.+.+.-..
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 234455556677788888 999999999997541 111 112233333 8999999999999998766664322
Q ss_pred CC----cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 632 NL----DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 632 g~----~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
+. +...+.++.++..+...+|+ +|.++++++...
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk----~a~~l~~qL~~~ 282 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL----DTEDLTNQLVKL 282 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC----TTHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh----HHHHHHHHHHHh
Confidence 11 12346777677777777887 366766666443
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=0.00013 Score=65.18 Aligned_cols=90 Identities=13% Similarity=0.026 Sum_probs=72.0
Q ss_pred hcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 004081 528 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI 607 (775)
Q Consensus 528 ~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i 607 (775)
..|++++|..++.+++.+.. .|| ....++..+|.++...|+|++|++.+++++... +....++..+|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~----~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL----QGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------PNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSCC----CHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC----CCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHH
Confidence 36899999999999988521 122 257889999999999999999999999999742 2337789999999
Q ss_pred HHhcCChhhHHHHHHHHHHHH
Q 004081 608 HKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 608 ~~~~G~~~~Al~~l~~AL~la 628 (775)
+...|++++|+..+.+++.+.
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00051 Score=62.31 Aligned_cols=94 Identities=11% Similarity=-0.014 Sum_probs=79.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|+|.+|...+.+++.+.+ +......++..++.++...|++++|++.+++++... .....++..
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~ 104 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGLDA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------GGDVKALYR 104 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------SCCHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------ccCHHHHHH
Confidence 468899999999999999988632 322347889999999999999999999999998742 223778899
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 604 LAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 604 lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
+|.++...|+++.|+..+.+++.+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998874
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.54 E-value=0.00012 Score=63.01 Aligned_cols=100 Identities=9% Similarity=-0.061 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
.+...++.++...|++++|+..+++++... .....++..+|.++...|++++|+..+.+++.+... ....
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~ 76 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNK 76 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchH
Confidence 457788999999999999999999998742 223678899999999999999999999999877432 1135
Q ss_pred HHHHHHHHHHHHc-CCChHHHHHHHHHHHHhHH
Q 004081 639 SATLTLAELWLSF-GPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 639 ~al~~La~l~l~l-G~~~f~~Al~lLe~aLp~i 670 (775)
.+...+|.++..+ |+. ++|++.++.++...
T Consensus 77 ~~~~~l~~~~~~~~~~~--~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 77 DVWAAKADALRYIEGKE--VEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHTTCSSCS--HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCH--HHHHHHHHHHhhcc
Confidence 6788899999999 999 99999999987653
No 179
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.0012 Score=58.12 Aligned_cols=92 Identities=9% Similarity=-0.025 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCC
Q 004081 534 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 613 (775)
Q Consensus 534 ~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~ 613 (775)
+|...+.+++...+ .+ ..+++.+|.++...|++++|+..+++++... .....++..+|.++...|+
T Consensus 3 ~a~~~~~~al~~~p----~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~ 68 (115)
T 2kat_A 3 AITERLEAMLAQGT----DN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFD------PTYSVAWKWLGKTLQGQGD 68 (115)
T ss_dssp CHHHHHHHHHTTTC----CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC----Cc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHcCC
Confidence 45667777776522 12 4688999999999999999999999999742 2336788999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCcHHHHH
Q 004081 614 AVLGIPYALASLSFCQLLNLDLLKAS 639 (775)
Q Consensus 614 ~~~Al~~l~~AL~la~~~g~~~~~A~ 639 (775)
++.|+..+.+++.+....++......
T Consensus 69 ~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 69 RAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHH
Confidence 99999999999999987776544333
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.48 E-value=0.00057 Score=58.49 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=75.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 603 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~ 603 (775)
..++..|++.+|...+.+++.+.+ + ...+...++.++...|++++|++.+++++.... ......++..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~-----~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~~ 81 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDP-----E---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE----DEYNKDVWAA 81 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC----CTTCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc-----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc----ccchHHHHHH
Confidence 367789999999999999988633 1 245788999999999999999999999987321 1225778999
Q ss_pred HHHHHHhc-CChhhHHHHHHHHHHH
Q 004081 604 LAEIHKKS-GNAVLGIPYALASLSF 627 (775)
Q Consensus 604 lA~i~~~~-G~~~~Al~~l~~AL~l 627 (775)
+|.++... |++++|+..+.+++..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 99999999 9999999999887654
No 181
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.44 E-value=0.0011 Score=57.69 Aligned_cols=79 Identities=10% Similarity=-0.042 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 637 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 637 (775)
..+++.+|.++...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.++...++....
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 4678999999999999999999999999742 2235689999999999999999999999999999888776555
Q ss_pred HHHHH
Q 004081 638 ASATL 642 (775)
Q Consensus 638 A~al~ 642 (775)
.....
T Consensus 81 ~~l~~ 85 (100)
T 3ma5_A 81 SELQD 85 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.42 E-value=0.00087 Score=55.69 Aligned_cols=88 Identities=19% Similarity=0.125 Sum_probs=70.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
|+.....+...++.++...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+..
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--- 74 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--- 74 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---
Confidence 444567889999999999999999999999998742 23367889999999999999999999999998742
Q ss_pred CcHHHHHHHHHHHHHHHHcC
Q 004081 633 LDLLKASATLTLAELWLSFG 652 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG 652 (775)
....+...+|.++..+|
T Consensus 75 ---~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 ---NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---TCHHHHHHHHHHHHHHC
T ss_pred ---CCHHHHHHHHHHHHhcC
Confidence 12456677888877655
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.40 E-value=0.00026 Score=63.11 Aligned_cols=90 Identities=9% Similarity=-0.012 Sum_probs=72.1
Q ss_pred HcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 004081 570 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 649 (775)
Q Consensus 570 ~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l 649 (775)
..|++++|++.+++++... .+......++..+|.++...|++++|+..+.+++.+.... ..+...+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHH
Confidence 4689999999999998621 0134568899999999999999999999999999885322 577888999999
Q ss_pred HcCCChHHHHHHHHHHHHhHH
Q 004081 650 SFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 650 ~lG~~~f~~Al~lLe~aLp~i 670 (775)
.+|+. ++|+..+++++...
T Consensus 73 ~~g~~--~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 73 NLGRY--EQGVELLLKIIAET 91 (117)
T ss_dssp HHTCH--HHHHHHHHHHHHHH
T ss_pred HcCCH--HHHHHHHHHHHHhC
Confidence 99998 99999999998764
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.40 E-value=0.00016 Score=81.94 Aligned_cols=118 Identities=8% Similarity=-0.088 Sum_probs=91.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.++..|+|++|...+++++.+.+ + ...++.++|.++..+|++++|++.+++++.. ......++..+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p-----~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l 80 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP-----S---NAIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKYIKGYYRR 80 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-----c---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence 46789999999999999999733 2 3678999999999999999999999999973 23457889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH--HHHcCCChHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL--WLSFGPNHAKMASNLIQ 664 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l--~l~lG~~~f~~Al~lLe 664 (775)
|.++...|++++|+..+.+|+.+..... .+...++.+ +...|+. ++|++.++
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~--~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAF--ERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHH--CCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHH--HHHhcccc
Confidence 9999999999999999999998853222 234445555 6666765 88888887
No 185
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.37 E-value=0.0027 Score=67.82 Aligned_cols=180 Identities=9% Similarity=-0.102 Sum_probs=121.1
Q ss_pred HHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCCh
Q 004081 535 AQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA 614 (775)
Q Consensus 535 A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~ 614 (775)
|...++++... +..+ ..+...+|.++...|++++|++.+.+.+. .+.......+....++++...|++
T Consensus 85 a~~~l~~l~~~----~~~~----~~~~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~lea~~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 85 NIEELENLLKD----KQNS----PYELYLLATAQAILGDLDKSLETCVEGID----NDEAEGTTELLLLAIEVALLNNNV 152 (310)
T ss_dssp CCHHHHHTTTT----SCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhc----CCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcHHHHHHHHHHHHHCCCH
Confidence 66666666542 1112 23457899999999999999999998864 222257889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH--HHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhc
Q 004081 615 VLGIPYALASLSFCQLLNLDLLKASATLTLAELW--LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 692 (775)
Q Consensus 615 ~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~--l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA 692 (775)
+.|...+.+........ ....-.++..|++.| +..|...+++|..+|++... ..++ +.. ...+++ |++.
T Consensus 153 d~A~k~l~~~~~~~~d~--~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~-~~~--~~lLln-~~~~ 223 (310)
T 3mv2_B 153 STASTIFDNYTNAIEDT--VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPT-WKT--QLGLLN-LHLQ 223 (310)
T ss_dssp HHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCS-HHH--HHHHHH-HHHH
T ss_pred HHHHHHHHHHHhcCccc--cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCC-ccc--HHHHHH-HHHH
Confidence 99999987764432100 011124455576665 44562223999999999643 3454 111 222233 7888
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHHhcCC
Q 004081 693 DPSFSVSQNPEAVLDPLRQASEELQVLED----HELAAEAFYLIAIVFDKLGR 741 (775)
Q Consensus 693 ~~~~~~~g~~~~Al~~L~~Al~~f~~l~~----~~~~~evl~~LA~l~~~lGd 741 (775)
.|++++|...|+...+.+=.++. ...-.+++..++.+...+|+
T Consensus 224 ------~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 224 ------QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp ------HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred ------cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 89999999999987776633322 13357788888888888998
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.36 E-value=9e-05 Score=64.26 Aligned_cols=88 Identities=10% Similarity=-0.071 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCH
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 676 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~ 676 (775)
.+.++..+|.++...|++++|+..+.+++.+... ...+...+|.++..+|+. ++|+..+++++..--..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEY--TQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTSCSSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCCCccHH
Confidence 4678899999999999999999999999988532 257788899999999998 99999999999887777777
Q ss_pred HHHHHHHHHHHHhhhc
Q 004081 677 ELRARAFIAEAKCLLS 692 (775)
Q Consensus 677 ~l~A~a~~~LAr~~lA 692 (775)
...+.++..+|.++..
T Consensus 75 ~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888999988877
No 187
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.34 E-value=0.035 Score=69.56 Aligned_cols=188 Identities=11% Similarity=0.009 Sum_probs=121.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-------------
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK------------- 590 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~------------- 590 (775)
......|++.+|...|.++ + | .......+..+...|+|++|++.+..+...-++
T Consensus 1113 KAql~~G~~kEAIdsYiKA-------d--D----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA-------D--D----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc-------C--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 4677889999999988764 1 3 235677899999999999999999765432211
Q ss_pred cccch--------hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004081 591 FNLQV--------ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 662 (775)
Q Consensus 591 ~gd~~--------~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~l 662 (775)
.+... .....+..+|..+...|++++|...+..|- ....++.+++.+|+. ++|.+.
T Consensus 1180 l~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~--------------ny~rLA~tLvkLge~--q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------------NFGRLASTLVHLGEY--QAAVDG 1243 (1630)
T ss_pred hcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh--------------HHHHHHHHHHHhCCH--HHHHHH
Confidence 01000 011235678999999999999998888763 345588888899986 999999
Q ss_pred HHHHHhHHH---------hcCCHH----------HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH---------
Q 004081 663 IQQALPLIL---------GHGGLE----------LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE--------- 714 (775)
Q Consensus 663 Le~aLp~il---------~~G~~~----------l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~--------- 714 (775)
++.+...-- +.|... ..+.-+..+++.+.. .|.+++|+.++++|+.
T Consensus 1244 arKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~------~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1244 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD------RGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHH------cCCHHHHHHHHHHHhccChhHhHHH
Confidence 988732210 000000 011122234444444 8999999999988843
Q ss_pred --------------------HH-HhccCHH-----HHHHHHHHHHHHHHhcCCHHHHH
Q 004081 715 --------------------EL-QVLEDHE-----LAAEAFYLIAIVFDKLGRLAERE 746 (775)
Q Consensus 715 --------------------~f-~~l~~~~-----~~~evl~~LA~l~~~lGd~~~A~ 746 (775)
.| .++.-+. .+......+..+|..-|+++.|-
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 22 2233333 45556777888888888888876
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.32 E-value=0.0003 Score=75.73 Aligned_cols=97 Identities=10% Similarity=0.015 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
.++++++.++...|+|++|+..+++++... .....++..+|.++...|++++|+..+.+++.+.... .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~ 298 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------K 298 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------H
Confidence 478899999999999999999999999742 3457899999999999999999999999999886432 3
Q ss_pred HHHHHHHHHHHH-cCCChHHHHHHHHHHHHhH
Q 004081 639 SATLTLAELWLS-FGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 639 ~al~~La~l~l~-lG~~~f~~Al~lLe~aLp~ 669 (775)
.+...|+.+... .+.. +++...+..++..
T Consensus 299 ~a~~~L~~l~~~~~~~~--~~a~~~~~~~l~~ 328 (338)
T 2if4_A 299 AIRRELRALAEQEKALY--QKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHhhCC
Confidence 455566666433 3444 7777777777654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.24 E-value=0.00036 Score=75.09 Aligned_cols=139 Identities=9% Similarity=-0.085 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc-----------chhHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-----------QVENASVLLLLAEIHKKSGNAVLGIPYALASL 625 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd-----------~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL 625 (775)
.+..+..++..+...|+|++|+..+++++........ ......++.++|.++...|++..|+..+.+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567888999999999999999999999875432110 00012488999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004081 626 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 705 (775)
Q Consensus 626 ~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~A 705 (775)
.+.. ....++..+|.++..+|+. ++|+..|+.++.+--. -..++..|+++... ..+...++
T Consensus 258 ~~~p------~~~~a~~~lg~a~~~~g~~--~~A~~~l~~al~l~p~------~~~a~~~L~~l~~~-----~~~~~~~a 318 (338)
T 2if4_A 258 TEEE------KNPKALFRRGKAKAELGQM--DSARDDFRKAQKYAPD------DKAIRRELRALAEQ-----EKALYQKQ 318 (338)
T ss_dssp HHCT------TCHHHHHHHHHHHHTTTCH--HHHHHHHHHTTC-------------------------------------
T ss_pred HhCC------CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-----HHHHHHHH
Confidence 8753 2257889999999999998 9999999999876422 23455566655333 13444555
Q ss_pred HHHHHHHHH
Q 004081 706 LDPLRQASE 714 (775)
Q Consensus 706 l~~L~~Al~ 714 (775)
...+.+++.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 555555544
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.10 E-value=0.0041 Score=53.88 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCCchHHHHHHHHHHhhcCCHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCCcchhhhHHhhHHHHHHhhCChHHHHHHH
Q 004081 166 APELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVL 245 (775)
Q Consensus 166 ~p~~~~~h~l~yl~~~~~~dy~~A~d~LhryFD~~~~~~~~dr~~~~~~~~~~~~~qyAlLnlA~lh~~FG~~~~A~~al 245 (775)
.|+-+.++|..-..++..|+|..|++.+.+...... .+-.+..+||.++...|.+++|+..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP------------------DYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 588889999999999999999999999999887643 12338899999999999999999999
Q ss_pred HHHHHHHHHccchHHHHHHHHHH
Q 004081 246 TEAVCLSQQHSNDTCLAYTLAAI 268 (775)
Q Consensus 246 ~EAi~~Aqe~~D~~cL~~al~wl 268 (775)
+++|.++..++|.........++
T Consensus 65 ~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 65 AQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhhhhcCCchhHHHHHHHHH
Confidence 99999999999998877776553
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.02 E-value=0.0083 Score=52.63 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhhcCCHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCCcchhhhHHhhHHHHHHhhC
Q 004081 157 LILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFG 236 (775)
Q Consensus 157 ~~~~~l~~~~p~~~~~h~l~yl~~~~~~dy~~A~d~LhryFD~~~~~~~~dr~~~~~~~~~~~~~qyAlLnlA~lh~~FG 236 (775)
..+...++..|+.+.+++..-..++..|+|..|+..+.+...... .+..+..+||.++...|
T Consensus 6 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 6 ERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------------------TYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------------------CcHHHHHHHHHHHHHcC
Confidence 356666778999999999988899999999999999998887642 13347789999999999
Q ss_pred ChHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhhh
Q 004081 237 HPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLL 272 (775)
Q Consensus 237 ~~~~A~~al~EAi~~Aqe~~D~~cL~~al~wl~~l~ 272 (775)
++++|+..+++++.+....+|...+.-....+-.+.
T Consensus 68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 999999999999999999999877666655544443
No 192
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.02 E-value=0.015 Score=62.03 Aligned_cols=209 Identities=7% Similarity=-0.082 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhc---CCHHHHHHHHHHHhhhhhcCC
Q 004081 476 ALAHVKLIQHLAVFK--GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR---GHLKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 476 a~al~~LA~~la~~G--~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~---G~~~~A~~~l~~ll~L~~~~~ 550 (775)
..+....+..+...| ++++++..++.++...|..-. +|..+-.++-...... +++.++..++.+++...+
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p--- 141 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP--- 141 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH--HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC---
Confidence 356677777777788 999999999999988875443 3333211100011123 799999999999998622
Q ss_pred CCChhhHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCC------hhhHHHHHH
Q 004081 551 GVDMDLKTEASLRHARTLLAANQFS--EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN------AVLGIPYAL 622 (775)
Q Consensus 551 ~~D~~~~~~a~~~~a~ll~~~Gd~~--eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~------~~~Al~~l~ 622 (775)
. -..+...++.++...|+++ ++++.+++++. .......++..++.+....|+ +++++..+.
T Consensus 142 ----k-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~------~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~ 210 (306)
T 3dra_A 142 ----K-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID------TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK 210 (306)
T ss_dssp ----T-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH
T ss_pred ----C-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 2 3578999999999999999 99999999986 234457788888888888887 788888888
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCCh
Q 004081 623 ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP 702 (775)
Q Consensus 623 ~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~ 702 (775)
+++.+.-.. ..+-..++.++..+|.. .+.....+++++..- +.+ ..-..++..+|.++.. .|+.
T Consensus 211 ~aI~~~p~n------~SaW~y~~~ll~~~~~~-~~~~~~~~~~~~~~~-~~~--~~s~~al~~la~~~~~------~~~~ 274 (306)
T 3dra_A 211 DKIVKCPQN------PSTWNYLLGIHERFDRS-ITQLEEFSLQFVDLE-KDQ--VTSSFALETLAKIYTQ------QKKY 274 (306)
T ss_dssp HHHHHCSSC------HHHHHHHHHHHHHTTCC-GGGGHHHHHTTEEGG-GTE--ESCHHHHHHHHHHHHH------TTCH
T ss_pred HHHHhCCCC------ccHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcc-CCC--CCCHHHHHHHHHHHHc------cCCH
Confidence 888765322 35667788888889986 133445666555431 000 1123577888888877 8999
Q ss_pred HHHHHHHHHHHHHH
Q 004081 703 EAVLDPLRQASEEL 716 (775)
Q Consensus 703 ~~Al~~L~~Al~~f 716 (775)
++|+++++.+.+.+
T Consensus 275 ~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 275 NESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887543
No 193
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.051 Score=60.87 Aligned_cols=127 Identities=17% Similarity=-0.021 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-hcCC
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL-GHGG 675 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il-~~G~ 675 (775)
++++...+|.++...|++.+|...+..-..-+.+.-+.....+..+....+++..++. .+|..++..+.+.+. ....
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~--~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY--SQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhhcccCCc
Confidence 6778899999999999999999999877666666667788888888899999999998 999999999987655 4467
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 004081 676 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 731 (775)
Q Consensus 676 ~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~ 731 (775)
..++++.+...|+.+.. .+++.+|..++.++++.+...+++.....+++.
T Consensus 214 ~~lk~~~~~~~~~~~~~------e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLH------KREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 88999999999999999 999999999999999999999998766555543
No 194
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.94 E-value=0.0012 Score=73.80 Aligned_cols=244 Identities=14% Similarity=0.118 Sum_probs=96.5
Q ss_pred HHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcC-chHH--------
Q 004081 444 TAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-KSRI-------- 514 (775)
Q Consensus 444 alW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~-~~~~-------- 514 (775)
.+|..+|...+....-.-...+|-+.. ....+..++......|+|++|...++.+.+..+... +...
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~----D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhC
Confidence 488888887766542211222333221 122555666666678888888888887775421100 0000
Q ss_pred ------------HHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004081 515 ------------LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAH 582 (775)
Q Consensus 515 ------------~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~ 582 (775)
.......++.+....|+|.+|..++.++ .-..+++.++..+|+|++|++.+.
T Consensus 109 ~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 109 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp CHHHHTTTTTCC----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 0001111114555666666666666543 125556666666666666666665
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004081 583 SLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 662 (775)
Q Consensus 583 ~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~l 662 (775)
++. ..+++...+.+....|++..|...... +. ..+.-+..+..++...|.. ++|..+
T Consensus 173 KA~-----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~-------~~ad~l~~lv~~Yek~G~~--eEai~l 229 (449)
T 1b89_A 173 KAN-----------STRTWKEVCFACVDGKEFRLAQMCGLH---IV-------VHADELEELINYYQDRGYF--EELITM 229 (449)
T ss_dssp HHT-----------CHHHHHHHHHHHHHTTCHHHHHHTTTT---TT-------TCHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HcC-----------CchhHHHHHHHHHHcCcHHHHHHHHHH---HH-------hCHhhHHHHHHHHHHCCCH--HHHHHH
Confidence 551 245555556666666666666444332 10 1111233477888889986 999999
Q ss_pred HHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH-HhccCHH-----HHHHHHHHHHHHH
Q 004081 663 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL-QVLEDHE-----LAAEAFYLIAIVF 736 (775)
Q Consensus 663 Le~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f-~~l~~~~-----~~~evl~~LA~l~ 736 (775)
++.+|.+=+.+. -++..||-++.. =.+++..+++ +.| .++.-|. .+......+..+|
T Consensus 230 Le~aL~le~ah~------~~ftel~il~~k-------y~p~k~~ehl----~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 230 LEAALGLERAHM------GMFTELAILYSK-------FKPQKMREHL----ELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHTTSTTCCH------HHHHHHHHHHHT-------TCHHHHHHHH----HHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHhCCcHHHH------HHHHHHHHHHHh-------cCHHHHHHHH----HHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999986654442 344555544433 1233333333 334 4566666 5667778999999
Q ss_pred HhcCCHHHHHH
Q 004081 737 DKLGRLAEREE 747 (775)
Q Consensus 737 ~~lGd~~~A~~ 747 (775)
..-|+.+.|-.
T Consensus 293 ~~~~e~d~A~~ 303 (449)
T 1b89_A 293 DKYEEYDNAII 303 (449)
T ss_dssp HHTTCHHHHHH
T ss_pred HhhchHHHHHH
Confidence 99999998865
No 195
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.89 E-value=0.0043 Score=59.81 Aligned_cols=129 Identities=12% Similarity=0.023 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 554 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL---QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd---~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
|.+...+++..+.-++..|.|+.|.-+..-++.......+ +..+++++..+|..+...|+|.+|...+.+||.+.+.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 4556677888899999999999999999988877654333 5678999999999999999999999999999999873
Q ss_pred hC-------------------CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhh
Q 004081 631 LN-------------------LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 691 (775)
Q Consensus 631 ~g-------------------~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~l 691 (775)
.- +...+.+++..++.++..+|+. ++|+..++.+=+.. ...+...+|||.|.
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~--~~Ai~~Le~Ip~k~-------Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD--KDAIAILDGIPSRQ-------RTPKINMLLANLYK 166 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCH--HHHHHHHHTSCGGG-------CCHHHHHHHHHHCC
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH--HHHHHHHhcCCchh-------cCHHHHHHHHHHhc
Confidence 21 1123458889999999999998 99999888763332 23456677777653
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.79 E-value=0.0089 Score=55.31 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=89.4
Q ss_pred cCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 004081 571 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS 650 (775)
Q Consensus 571 ~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~ 650 (775)
.+|+++|+++++++.+ .|+.. +. +|.+|...+..++|+.++.+|.+. | .+.+...||.++..
T Consensus 8 ~~d~~~A~~~~~~aa~----~g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g----~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE----LNEMF----GC--LSLVSNSQINKQKLFQYLSKACEL----N----SGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHH----TTCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc----CCCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHHc
Confidence 3578899999988875 23332 22 899999888899999999888765 3 25788899999987
Q ss_pred ----cCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 651 ----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 651 ----lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
.++. ++|+..++.+... |+ ..+++.||.++..+ .+..+++.+|+.++++|.+
T Consensus 70 G~g~~~d~--~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G--~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 70 GKYVKKDL--RKAAQYYSKACGL----ND----QDGCLILGYKQYAG--KGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CSSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCccH--HHHHHHHHHHHcC----CC----HHHHHHHHHHHHCC--CCCCcCHHHHHHHHHHHHH
Confidence 5555 9999999999754 55 56788999999874 3346889999999999975
No 197
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.71 E-value=0.063 Score=57.04 Aligned_cols=226 Identities=8% Similarity=-0.028 Sum_probs=148.0
Q ss_pred HHhcCH-HHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC--CHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHH
Q 004081 487 AVFKGY-KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 563 (775)
Q Consensus 487 a~~G~y-~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~ 563 (775)
...|+| ++|+...+.++..-|.. ...|..+-. .....| ++.++..+++.++...+. -..+.+.
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~--~taWn~R~~----~L~~l~~~~~~eeL~~~~~~L~~nPk--------~y~aW~~ 108 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASH--YTIWIYRFN----ILKNLPNRNLYDELDWCEEIALDNEK--------NYQIWNY 108 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHHH----HHHTCTTSCHHHHHHHHHHHHHHCTT--------CCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHH--HHHHHHHHH----HHHHcccccHHHHHHHHHHHHHHCcc--------cHHHHHH
Confidence 345554 68999999888876642 234555421 234566 999999999999987442 2356777
Q ss_pred HHHHH----HHc---CChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHhCCc
Q 004081 564 HARTL----LAA---NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--LGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 564 ~a~ll----~~~---Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~--~Al~~l~~AL~la~~~g~~ 634 (775)
++.++ ... ++++++++.+++++.. ......++..++.+....|.++ +++..+.+++.+--.+
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--- 179 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSS------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--- 179 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC---
Confidence 77777 666 8999999999999962 3445788889999999999998 9999998888754222
Q ss_pred HHHHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHH
Q 004081 635 LLKASATLTLAELWLSFGPN----HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP-EAVLDPL 709 (775)
Q Consensus 635 ~~~A~al~~La~l~l~lG~~----~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~-~~Al~~L 709 (775)
-.|-...+.++..+|.. -++++++.++.++..--...+ +++-++-++.. .|+. +.+.++.
T Consensus 180 ---~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S------aW~y~~~ll~~------~~~~~~~~~~~~ 244 (306)
T 3dra_A 180 ---NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS------TWNYLLGIHER------FDRSITQLEEFS 244 (306)
T ss_dssp ---HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH------HHHHHHHHHHH------TTCCGGGGHHHH
T ss_pred ---HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc------HHHHHHHHHHh------cCCChHHHHHHH
Confidence 24555566676667651 147888888888766433322 33334433333 3432 3344454
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004081 710 RQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 756 (775)
Q Consensus 710 ~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~ 756 (775)
+++.+.- +....-..++..||.+|...|+.++|.+ .|..+.
T Consensus 245 ~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~~---~~~~l~ 285 (306)
T 3dra_A 245 LQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESRT---VYDLLK 285 (306)
T ss_dssp HTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHHH---HHHHHH
T ss_pred HHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHHH---HHHHHH
Confidence 4443310 0011223578899999999999887766 455543
No 198
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.61 E-value=0.072 Score=62.88 Aligned_cols=227 Identities=11% Similarity=0.004 Sum_probs=146.4
Q ss_pred HHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHH-HHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCCh
Q 004081 496 FSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQ-KVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQF 574 (775)
Q Consensus 496 l~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~-~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~ 574 (775)
..++++++..+|. ...+|..... .....|+..+|. .++.++....+ . .....+..+.+....|++
T Consensus 329 ~~~Ye~aL~~~p~--~~~lW~~ya~----~~~~~~~~~~a~r~il~rAi~~~P-----~---s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 329 TYVYMQAAQHVCF--APEIWFNMAN----YQGEKNTDSTVITKYLKLGQQCIP-----N---SAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHHHHTTT--CHHHHHHHHH----HHHHHSCCTTHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHH----HHHhcCcHHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHhCCH
Confidence 3455666666653 4456776543 345568888886 99998877533 1 234567788888899999
Q ss_pred HHHHHHHHHHHHHHhhcc------cc----------hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHH
Q 004081 575 SEAAAVAHSLFCMCYKFN------LQ----------VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 575 ~eAl~~l~~aL~~~~~~g------d~----------~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 638 (775)
++|.+.+++++....... .+ .....+++..+.+..+.|..++|...+.+|+....... .
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~ 469 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----P 469 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----T
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----h
Confidence 999999999886431100 00 01244677778888888999999999988876511111 1
Q ss_pred HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 004081 639 SATLTLAELWLSFGP-NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 639 ~al~~La~l~l~lG~-~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~ 717 (775)
.+....|.+....|. . ++|+.+++.+|...-..+. .+..+++.... .|+.+.|...+++|+...
T Consensus 470 ~lyi~~A~lE~~~~~d~--e~Ar~ife~~Lk~~p~~~~------~w~~y~~fe~~------~~~~~~AR~lferal~~~- 534 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDT--KTACKVLELGLKYFATDGE------YINKYLDFLIY------VNEESQVKSLFESSIDKI- 534 (679)
T ss_dssp HHHHHHHHHHHTTTSCC--HHHHHHHHHHHHHHTTCHH------HHHHHHHHHHH------HTCHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHCCCchH------HHHHHHHHHHh------CCCHHHHHHHHHHHHHhc-
Confidence 222334555445554 6 8999999999987543322 23344454555 688888999999887543
Q ss_pred hccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhcc
Q 004081 718 VLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 761 (775)
Q Consensus 718 ~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~~ 761 (775)
.++.....+.......-...|+.+.+.. ...++....++
T Consensus 535 --~~~~~~~~lw~~~~~fE~~~G~~~~~~~---v~~R~~~~~P~ 573 (679)
T 4e6h_A 535 --SDSHLLKMIFQKVIFFESKVGSLNSVRT---LEKRFFEKFPE 573 (679)
T ss_dssp --SSTTHHHHHHHHHHHHHHHTCCSHHHHH---HHHHHHHHSTT
T ss_pred --CCHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCC
Confidence 2334566677777777788898887666 44444444444
No 199
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.48 E-value=0.12 Score=61.07 Aligned_cols=214 Identities=7% Similarity=-0.054 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhc-C----
Q 004081 476 ALAHVKLIQHLAVFKGYKEAF-SALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS-V---- 549 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl-~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~-~---- 549 (775)
.......+..+...|+.++|. .++++|....|. ...+|.... ......|+++.|+.++++++..... .
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~--s~~Lwl~~a----~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN--SAVLAFSLS----EQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC--CHHHHHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 355677788888899999997 999999877663 222333322 2455679999999999999874310 0
Q ss_pred --CCCCh-------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCC-hhhHHH
Q 004081 550 --TGVDM-------DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN-AVLGIP 619 (775)
Q Consensus 550 --~~~D~-------~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~-~~~Al~ 619 (775)
.+... .....++...+.+..+.|+.+.|..++.+++... ......+++..|.+-.+.|. +++|..
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-----~~~~~~lyi~~A~lE~~~~~d~e~Ar~ 491 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-----KLVTPDIYLENAYIEYHISKDTKTACK 491 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----GGSCTHHHHHHHHHHHTTTSCCHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCCHHHHHH
Confidence 00000 0123467777888889999999999999987631 11123455566777777765 899999
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 004081 620 YALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS 699 (775)
Q Consensus 620 ~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~ 699 (775)
.+.+++..+.. .. ......+......|+. ++|+.++++++..... .......+..+.+-... .
T Consensus 492 ife~~Lk~~p~---~~---~~w~~y~~fe~~~~~~--~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~------~ 554 (679)
T 4e6h_A 492 VLELGLKYFAT---DG---EYINKYLDFLIYVNEE--SQVKSLFESSIDKISD---SHLLKMIFQKVIFFESK------V 554 (679)
T ss_dssp HHHHHHHHHTT---CH---HHHHHHHHHHHHHTCH--HHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHH------T
T ss_pred HHHHHHHHCCC---ch---HHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH------c
Confidence 99999997532 11 2234466667778987 9999999999876532 12233344444444444 7
Q ss_pred CChHHHHHHHHHHHHHHH
Q 004081 700 QNPEAVLDPLRQASEELQ 717 (775)
Q Consensus 700 g~~~~Al~~L~~Al~~f~ 717 (775)
|+.+.+....+++.+.|-
T Consensus 555 G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp CCSHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 888888888888887664
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.43 E-value=0.019 Score=53.08 Aligned_cols=110 Identities=12% Similarity=-0.013 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 004081 530 GHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK 609 (775)
Q Consensus 530 G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~ 609 (775)
+++.+|..++.++... + ++... ++.++...+.+++|+++++++.. .+...++..+|.+|.
T Consensus 9 ~d~~~A~~~~~~aa~~----g--~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~--------~g~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL----N--EMFGC------LSLVSNSQINKQKLFQYLSKACE--------LNSGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHT----T--CTTHH------HHHHTCTTSCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC----C--CHhhh------HHHHHHcCCCHHHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 4678899999988774 3 33322 78888888899999999999876 255788999999999
Q ss_pred h----cCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhH
Q 004081 610 K----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 610 ~----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~----lG~~~f~~Al~lLe~aLp~ 669 (775)
. .+++.+|+..+.+|.+. |+ +.+...||.++.. .++. ++|+..++.+...
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~--~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNE--KQAVKTFEKACRL 126 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCH--HHHHHHHHHHHHC
Confidence 8 89999999999998764 32 5778889999987 5665 9999999998654
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.39 E-value=0.017 Score=47.50 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.++..|++.+|...+.+++.+.+ + ...++..++.++...|++++|+..+++++... .....++..+
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l 83 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDP-----N---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAKQNL 83 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCC-----C---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCHHHHHHH
Confidence 56778889999998888887632 1 24678899999999999999999999998742 2346677888
Q ss_pred HHHHHhcC
Q 004081 605 AEIHKKSG 612 (775)
Q Consensus 605 A~i~~~~G 612 (775)
|.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88887654
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.21 E-value=0.0044 Score=59.57 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=69.7
Q ss_pred hcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChH----------HHHHHHHHHHHHHhhcccchhH
Q 004081 528 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFS----------EAAAVAHSLFCMCYKFNLQVEN 597 (775)
Q Consensus 528 ~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~----------eAl~~l~~aL~~~~~~gd~~~~ 597 (775)
+.+.|.+|...++++..+.+ . .++++.+.+.++...|+++ +|+..+++++.+ ....
T Consensus 14 r~~~feeA~~~~~~Ai~l~P----~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------dP~~ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP----L----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT----T----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTC
T ss_pred HHhHHHHHHHHHHHHHHHCC----C----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------CcCc
Confidence 34568889999999988733 1 3568899999999998764 888888887763 3445
Q ss_pred HHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHHHHH
Q 004081 598 ASVLLLLAEIHKKSG-----------NAVLGIPYALASLSFCQ 629 (775)
Q Consensus 598 a~aLl~lA~i~~~~G-----------~~~~Al~~l~~AL~la~ 629 (775)
..++..+|.+|...| ++++|+..+.+|+++--
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 888999999999875 89999999999998864
No 203
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.13 E-value=0.0039 Score=69.70 Aligned_cols=203 Identities=14% Similarity=0.044 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
.+...||..+..+|++.+|...+..+. +...+.... ..+...|+|++|...+..+....+ +
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~-------D~~~y~~V~----~~ae~~g~~EeAi~yl~~ark~~~-----~--- 93 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYMEVV----QAANTSGNWEELVKYLQMARKKAR-----E--- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC-------CHHHHHHHH----HHHHhCCCHHHHHHHHHHHHHhCc-----c---
Confidence 478899999999999999999886542 111111111 245568888888887777655211 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHH
Q 004081 557 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 636 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 636 (775)
..+...++.++.+.|++.++.++++. ....++..+|..+...|.++.|..++.++
T Consensus 94 -~~i~~~Li~~Y~Klg~l~e~e~f~~~------------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------ 148 (449)
T 1b89_A 94 -SYVETELIFALAKTNRLAELEEFING------------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------ 148 (449)
T ss_dssp ----------------CHHHHTTTTTC------------C----------------CTTTHHHHHHHT------------
T ss_pred -chhHHHHHHHHHHhCCHHHHHHHHcC------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------
Confidence 23344556666666777766655531 01125555555555566665555555544
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH---------HHhcCCHHH----------HHHHHHHHHHhhhcCCCCC
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLIQQALPL---------ILGHGGLEL----------RARAFIAEAKCLLSDPSFS 697 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~---------il~~G~~~l----------~A~a~~~LAr~~lA~~~~~ 697 (775)
.....||.++..+|+. ++|.+.++.+-.. +...|.... .+.-...+..+|..
T Consensus 149 --~n~~~LA~~L~~Lg~y--q~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek----- 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEY--QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD----- 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH-----
T ss_pred --hhHHHHHHHHHHhccH--HHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH-----
Confidence 1123355555555554 5555555544100 000010000 00001124455665
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc
Q 004081 698 VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 739 (775)
Q Consensus 698 ~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~l 739 (775)
.|.+++|+.+|++|+.. + .....++..+|.+|..-
T Consensus 220 -~G~~eEai~lLe~aL~l----e--~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 220 -RGYFEELITMLEAALGL----E--RAHMGMFTELAILYSKF 254 (449)
T ss_dssp -TTCHHHHHHHHHHHTTS----T--TCCHHHHHHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHhCC----c--HHHHHHHHHHHHHHHhc
Confidence 78888888888888632 1 23345666677776654
No 204
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.68 Score=51.62 Aligned_cols=203 Identities=13% Similarity=0.024 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH-HHHHHHhhHHHHHHhcC--CHHHHHHHHHHHhhhhhcC
Q 004081 473 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSV 549 (775)
Q Consensus 473 e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~L~~~~ 549 (775)
....+++..+...+...|+++...+++.-.. ..+...... ..++...+ ..--... +...-......+ ..+
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls-kkr~qlk~ai~~~V~~~~--~~l~~~~~~d~~~~~~~i~~l----~~v 125 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLS-KKHGQLKLSIQYMIQKVM--EYLKSSKSLDLNTRISVIETI----RVV 125 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHH--HHHHHHCTTHHHHHHHHHHCC----SSS
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHH--HHHhcCCchhHHHHHHHHHHH----HHH
Confidence 3446777778888888999988877665322 222221111 22332211 1111112 111122222222 222
Q ss_pred CCCCh---hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 550 TGVDM---DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 550 ~~~D~---~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
...-. ..++.....++.++...|++.+|.+.+..+...+...-+......+++....++...+++.+|...+.++..
T Consensus 126 te~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 126 TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21111 125677788999999999999999999999988877667778899999999999999999999999988865
Q ss_pred HHH-HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHH
Q 004081 627 FCQ-LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 684 (775)
Q Consensus 627 la~-~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~ 684 (775)
.+. ....+...+.-....|.++..-++. .+|...|.+++......++....-.++.
T Consensus 206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y--~~a~~~y~e~~~~~~~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 206 KTFKNPKYESLKLEYYNLLVKISLHKREY--LEVAQYLQEIYQTDAIKSDEAKWKPVLS 262 (445)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 553 4455677888888889998888876 9999999999988888888755444433
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.75 E-value=0.057 Score=47.21 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g-d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
.-.+.+|..+...|+|..|..+++.++....... .......++..+|.++.+.|++..|+.++.+++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4467899999999999999999999998765432 234578899999999999999999999999999875
No 206
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.75 E-value=0.23 Score=56.41 Aligned_cols=171 Identities=12% Similarity=-0.027 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchH-HHHHHHhhH-----HHHHHhcCCHHHHHHHHHHHhhhhhcCCC
Q 004081 478 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-ILLLKLQLL-----HERSLHRGHLKLAQKVCDELGVMASSVTG 551 (775)
Q Consensus 478 al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~-~~~l~l~l~-----~~~al~~G~~~~A~~~l~~ll~L~~~~~~ 551 (775)
.+.++...+++.|++++|+.+++++.+.- ...+. ....-+... .......|++.+|.+++.+.... .+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--G~-- 101 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--KV-- 101 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--TC--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--CC--
Confidence 35556677889999999999999988752 22221 111111000 00011234578899999988762 22
Q ss_pred CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 552 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 552 ~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
.|. ..+...++..+...|++++|+++++++.. .|. .....++..+-..+.+.|+.++|...+.+-.. .
T Consensus 102 -~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~ 169 (501)
T 4g26_A 102 -VPN--EATFTNGARLAVAKDDPEMAFDMVKQMKA----FGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVE----S 169 (501)
T ss_dssp -CCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----T
T ss_pred -CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHh----c
Confidence 222 24567788899999999999999998865 232 23455666677778899999999998876543 3
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 632 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 632 g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
|...-. .+...|-..+...|+. ++|.+++++--..
T Consensus 170 G~~Pd~-~ty~~Li~~~~~~g~~--d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 170 EVVPEE-PELAALLKVSMDTKNA--DKVYKTLQRLRDL 204 (501)
T ss_dssp TCCCCH-HHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred CCCCCH-HHHHHHHHHHhhCCCH--HHHHHHHHHHHHh
Confidence 332222 3345567788899998 9999999986443
No 207
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.69 E-value=0.22 Score=53.90 Aligned_cols=176 Identities=11% Similarity=-0.094 Sum_probs=122.7
Q ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC-CHHHHHHHHHHHhhhhhcCC
Q 004081 472 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVT 550 (775)
Q Consensus 472 ~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~L~~~~~ 550 (775)
+++...+...+...+...+..++|+...+.++..-|.. ...|..+-. .....| ++.++..+++.++...+
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~--ytaWn~R~~----iL~~l~~~l~eEL~~~~~~L~~nP--- 120 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAH--YTVWQYRFS----LLTSLNKSLEDELRLMNEFAVQNL--- 120 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHHH----HHHHTTCCHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchh--HHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHhCC---
Confidence 44556666666656666666788999999988876642 335555421 223456 59999999999998633
Q ss_pred CCChhhHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChh--------hHHHH
Q 004081 551 GVDMDLKTEASLRHARTLLAA-N-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--------LGIPY 620 (775)
Q Consensus 551 ~~D~~~~~~a~~~~a~ll~~~-G-d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~--------~Al~~ 620 (775)
. -..+...++.++... | +++++++.+++++. .......++..++.+....|.++ +++..
T Consensus 121 ----K-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 121 ----K-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp ----C-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ----C-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 1 356788888888887 8 99999999998885 33445778888888888888777 77888
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHhHHHhc
Q 004081 621 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-----HAKMASNLIQQALPLILGH 673 (775)
Q Consensus 621 l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~-----~f~~Al~lLe~aLp~il~~ 673 (775)
+.+++.+--.+ -.|-...+.++..+|.. -++++++.+++++..--..
T Consensus 190 ~~k~I~~dp~N------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 190 CNEMLRVDGRN------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp HHHHHHHCTTC------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCCCC------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 87777754222 35566677777777752 1477888888877664433
No 208
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.62 E-value=0.14 Score=49.20 Aligned_cols=107 Identities=11% Similarity=-0.024 Sum_probs=83.8
Q ss_pred HHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC-CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcc
Q 004081 514 ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT-GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN 592 (775)
Q Consensus 514 ~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~-~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~g 592 (775)
.|.+..++ ...+..|.|+.|+-+..-++++...-. ..-|....+++...|..+...|+|..|...++++|..++...
T Consensus 20 ~~~l~dqi--k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 20 HMNVIDHV--RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp -CCHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHH--HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 678899999999999999888754322 113778899999999999999999999999999998887432
Q ss_pred c-------------------chhHHHHHHHHHHHHHhcCChhhHHHHHH
Q 004081 593 L-------------------QVENASVLLLLAEIHKKSGNAVLGIPYAL 622 (775)
Q Consensus 593 d-------------------~~~~a~aLl~lA~i~~~~G~~~~Al~~l~ 622 (775)
. ...+..+...+|.+|.+.|++..|+..+.
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 1 12245788889999999999999998874
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.54 E-value=0.043 Score=46.33 Aligned_cols=62 Identities=10% Similarity=0.169 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 562 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS-VLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 562 ~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~-aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
+.++..+...|++++|++.+++++.. ...... ++..+|.++...|++++|+..+.+++.+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56788899999999999999999873 122355 899999999999999999999999998854
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.43 E-value=0.17 Score=55.09 Aligned_cols=139 Identities=12% Similarity=-0.041 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHHhC
Q 004081 558 TEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG--NAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd---~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G--~~~~Al~~l~~AL~la~~~g 632 (775)
+.-++.++..++..++ +.+|+++++++++. ......+.+.+.++.+..... .......-+.+++.......
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS----SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 3445566666666554 47888888888862 223334445444444432222 12222333344444333444
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 712 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~A 712 (775)
.....+.+...++.++...|++ ++|...+++++.+- .+ +.++..+|+++.- .|++++|++.+++|
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~--d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~------~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKT--DESYQAINTGIDLE---MS----WLNYVLLGKVYEM------KGMNREAADAYLTA 336 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHC---CC----HHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcC---CC----HHHHHHHHHHHHH------CCCHHHHHHHHHHH
Confidence 4455666777777777778998 99999999998883 33 5677899999998 99999999999999
Q ss_pred HHH
Q 004081 713 SEE 715 (775)
Q Consensus 713 l~~ 715 (775)
+..
T Consensus 337 lrL 339 (372)
T 3ly7_A 337 FNL 339 (372)
T ss_dssp HHH
T ss_pred Hhc
Confidence 864
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.32 E-value=0.01 Score=57.07 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=70.1
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChh----------hHHHHHHHHHHHHHHhCCcHHHH
Q 004081 569 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV----------LGIPYALASLSFCQLLNLDLLKA 638 (775)
Q Consensus 569 ~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~----------~Al~~l~~AL~la~~~g~~~~~A 638 (775)
-+.+.|++|++.+++++.+ ....+.++.++|.++...|++. +|+..+.+|+.+.-. .+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHhHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cH
Confidence 4567789999999998863 3456789999999999998764 888899888888643 35
Q ss_pred HHHHHHHHHHHHcCC---------ChHHHHHHHHHHHHhHH
Q 004081 639 SATLTLAELWLSFGP---------NHAKMASNLIQQALPLI 670 (775)
Q Consensus 639 ~al~~La~l~l~lG~---------~~f~~Al~lLe~aLp~i 670 (775)
.+...||.++..+|. ..|++|+..+++++.+-
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 778889999988862 13588888888887663
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.80 E-value=0.38 Score=52.32 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHhhhhhcCCCCChhh-HHHHHHHHHHHH-HHcC-ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 004081 530 GHLKLAQKVCDELGVMASSVTGVDMDL-KTEASLRHARTL-LAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 606 (775)
Q Consensus 530 G~~~~A~~~l~~ll~L~~~~~~~D~~~-~~~a~~~~a~ll-~~~G-d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~ 606 (775)
.++.+|..++++++.+ ||.- .+.+.+..+.++ ...+ ........+.+++............++++..+|.
T Consensus 213 ~~~~~A~~l~e~Al~l-------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal 285 (372)
T 3ly7_A 213 KSLNRASELLGEIVQS-------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV 285 (372)
T ss_dssp HHHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHH
Confidence 4458899999999987 4331 222222222222 1222 2223334444444433333445666888888988
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 004081 607 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 669 (775)
Q Consensus 607 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~ 669 (775)
++...|+++.|+..+.+|+.+. .. +.+...+|.++...|++ ++|.+.+++++.+
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln----~s---~~a~~llG~~~~~~G~~--~eA~e~~~~AlrL 339 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLE----MS---WLNYVLLGKVYEMKGMN--REAADAYLTAFNL 339 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC----CC---HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcC----CC---HHHHHHHHHHHHHCCCH--HHHHHHHHHHHhc
Confidence 8888899999999999999994 11 45667789999999999 9999999999766
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.72 E-value=0.31 Score=40.83 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE-ASLRHARTLLAANQFSEAAAVAHSLFCM 587 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~-a~~~~a~ll~~~Gd~~eAl~~l~~aL~~ 587 (775)
..++..|+|.+|...+++++.+.+ . ... +++.+|.++...|++++|++.+++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-------~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-------V-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-------S-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-------C-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 367789999999999999988632 2 234 8899999999999999999999999974
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.02 E-value=0.6 Score=54.84 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHH
Q 004081 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 559 (775)
Q Consensus 480 ~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~ 559 (775)
.+++..+...|.+++|+...+.....| ..++..|++++|.+++..+ . + ..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f-----------------~~~l~~~~~~~A~~~~~~~-------~--~----~~ 682 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQKF-----------------ELALKVGQLTLARDLLTDE-------S--A----EM 682 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHHHH-----------------HHHHHHTCHHHHHHHHTTC-------C--C----HH
T ss_pred HHHHHHHHhCCChHHheecCCCcchhe-----------------ehhhhcCCHHHHHHHHHhh-------C--c----Hh
Confidence 444455555666666655443222222 4677888888887764332 1 2 24
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSL 584 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~a 584 (775)
.+..+|.+.+..|+++.|.+.+.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5677888888888888888888764
No 215
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.93 E-value=0.47 Score=51.27 Aligned_cols=154 Identities=9% Similarity=-0.061 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC-CHHHHHHHHHHHhhhhhcCCCCC
Q 004081 476 ALAHVKLIQHLAVFK-GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVTGVD 553 (775)
Q Consensus 476 a~al~~LA~~la~~G-~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~L~~~~~~~D 553 (775)
..+....+..+...| .+++++..++.++...|. ...+|..+--+ .....+ ++.++.+++.+++.. |
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wl---L~~l~~~~~~~EL~~~~k~L~~-------d 155 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLL---LDRISPQDPVSEIEYIHGSLLP-------D 155 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHH---HHHHCCSCCHHHHHHHHHHTSS-------C
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHH---HHHhcCCChHHHHHHHHHHHHh-------C
Confidence 356666777777788 599999999999987763 34455554221 111225 889999999999875 3
Q ss_pred hhhHHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCC-------hhhHH
Q 004081 554 MDLKTEASLRHARTLLAANQFS--------EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN-------AVLGI 618 (775)
Q Consensus 554 ~~~~~~a~~~~a~ll~~~Gd~~--------eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~-------~~~Al 618 (775)
|. -..+...++.++...|.++ ++++.+++++. .......++..++.+....|+ +++++
T Consensus 156 pk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 156 PK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 32 3568888999998888888 89999888886 234557788889999988887 46777
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 004081 619 PYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 654 (775)
Q Consensus 619 ~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~ 654 (775)
..+.+++.+.-.. ..+-..+..++...|.+
T Consensus 229 e~~~~aI~~~P~n------~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 229 IYILKSIHLIPHN------VSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHCTTC------HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHhcCCC
Confidence 7777777665322 24555566777777764
No 216
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.39 Score=53.33 Aligned_cols=141 Identities=17% Similarity=0.060 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 004081 579 AVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 657 (775)
Q Consensus 579 ~~l~~aL~~~~~~g-d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~ 657 (775)
+.+.+.+..+.+.. ......+++..+|..|...|+++.|+..+.+....+...+ ......+.+..+.+..|+. .
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---~kid~~l~~irl~l~~~d~--~ 185 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG---AKIDVMLTIARLGFFYNDQ--L 185 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC---SHHHHHHHHHHHHHHHTCH--H
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHhccH--H
Confidence 44444444444321 2223456888899999999999999999998887775433 2344555567777888887 9
Q ss_pred HHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 004081 658 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFY 730 (775)
Q Consensus 658 ~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~ 730 (775)
.+...++.+-..+...|+...+++....-|..+++ .+++..|..++-++...|...+......-+.|
T Consensus 186 ~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~------~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y 252 (429)
T 4b4t_R 186 YVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLA------VRNFKEAAKLLVDSLATFTSIELTSYESIATY 252 (429)
T ss_dssp HHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGG------TSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHhccCCccchhhHHHHHHH
Confidence 99999999988888889999999888888888998 88899999999888888877666555444444
No 217
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.55 E-value=4.7 Score=43.02 Aligned_cols=154 Identities=11% Similarity=-0.098 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC--CHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHH
Q 004081 492 YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 569 (775)
Q Consensus 492 y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~ 569 (775)
+++++..++.+....|. ....|.-+.-+ ....| +|.++..++.+++.. ||. -..++..++.++.
T Consensus 90 l~~EL~~~~~~L~~~PK--ny~aW~hR~wl----L~~l~~~~~~~EL~~~~k~l~~-------dpr-Ny~AW~~R~~vl~ 155 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--SYGTWHHRCWL----LSRLPEPNWARELELCARFLEA-------DER-NFHCWDYRRFVAA 155 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHH----HHHCSSCCHHHHHHHHHHHHHH-------CTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHH----HhccCcccHHHHHHHHHHHHHh-------CCC-CHHHHHHHHHHHH
Confidence 78888999888877653 34455554211 12334 599999999999986 332 3678999999999
Q ss_pred HcCC-hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc--------------CChhhHHHHHHHHHHHHHHhCCc
Q 004081 570 AANQ-FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS--------------GNAVLGIPYALASLSFCQLLNLD 634 (775)
Q Consensus 570 ~~Gd-~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~--------------G~~~~Al~~l~~AL~la~~~g~~ 634 (775)
..|+ ++++++.+.+++.. .+....++..++.+.... +.+++++..+.+++.+.-..
T Consensus 156 ~l~~~~~eel~~~~~~I~~------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d--- 226 (331)
T 3dss_A 156 QAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND--- 226 (331)
T ss_dssp HTTCCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC---
T ss_pred HhCcCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC---
Confidence 9999 59999999998862 344456666777776665 44678888888888775322
Q ss_pred HHHHHHHHHHHHHHHH-cCCC--------hHHHHHHHHHHHHhHHH
Q 004081 635 LLKASATLTLAELWLS-FGPN--------HAKMASNLIQQALPLIL 671 (775)
Q Consensus 635 ~~~A~al~~La~l~l~-lG~~--------~f~~Al~lLe~aLp~il 671 (775)
..+-..+..++.. .|.. ..+++++.+++++..--
T Consensus 227 ---~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 227 ---QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ---HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ---HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 1333323333322 3421 24788888888876654
No 218
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.39 E-value=0.8 Score=52.70 Aligned_cols=153 Identities=11% Similarity=-0.100 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcC--CHHHHHHHHHHHh
Q 004081 476 ALAHVKLIQHLAVFKG----------YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELG 543 (775)
Q Consensus 476 a~al~~LA~~la~~G~----------y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll 543 (775)
..+....+..+...|+ |++++..++.+.+..|. ....|.-+.- .....| +|.++.+.+++++
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~y~aW~hR~w----~l~~l~~~~~~~el~~~~k~l 136 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCW----LLSRLPEPNWARELELCARFL 136 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHH----HHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHH----HHHHcccccHHHHHHHHHHHH
Confidence 3556666666666777 99999999999987763 3445655421 223456 7899999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc-----------
Q 004081 544 VMASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS----------- 611 (775)
Q Consensus 544 ~L~~~~~~~D~~~~~~a~~~~a~ll~~~G-d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~----------- 611 (775)
.+ |+. -..++..++.++...| .++++++.+++++. .......++..++.++...
T Consensus 137 ~~-------d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~------~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 137 EA-------DER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT------RNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HH-------CTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT------TTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred hh-------ccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH------HCCCCccHHHHHHHHHHhhccccccccccc
Confidence 96 333 3678999999999999 99999999988875 3344567788888887764
Q ss_pred ---CChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 004081 612 ---GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 654 (775)
Q Consensus 612 ---G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~ 654 (775)
+.+++++..+.+|+.+.-.. ..+...++.++...|..
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~------~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSC------SHHHHHHHHHHSCCCCC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHhcCCCc
Confidence 44678888888888775322 25566677777666664
No 219
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.23 E-value=6.1 Score=41.81 Aligned_cols=184 Identities=10% Similarity=0.017 Sum_probs=122.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 004081 564 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 643 (775)
Q Consensus 564 ~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 643 (775)
+-+-.+..|+|=||...++.......+.+.....+..+..-|.++.+.|+...|-.+..--++...+.+.+.... .+-+
T Consensus 19 rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~-~~~r 97 (312)
T 2wpv_A 19 RFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDI-SVAR 97 (312)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHH-HHHH
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHH
Confidence 334446778888888888777666555555555566777778888888998888887777777777777666544 3445
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhcCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH-----------
Q 004081 644 LAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ----------- 711 (775)
Q Consensus 644 La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~-~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~----------- 711 (775)
|.++...+...+ ..=.+.+++++-+-...|+ ..+--..+..+|..+.. .+++.+|..++-.
T Consensus 98 l~~l~~~~p~~~-~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~------e~~~~~A~~H~i~~~~~s~~~~a~ 170 (312)
T 2wpv_A 98 LVRLIAELDPSE-PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE------GDFVYEAERYFMLGTHDSMIKYVD 170 (312)
T ss_dssp HHHHHTTCCTTC-TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH------TTCHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHCCCCC-chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh------cCCHHHHHHHHHhCCCccHHHHHH
Confidence 778876655431 1235778888888776644 44445667788888888 7777777776631
Q ss_pred -HHHHHHhc--cCHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHH
Q 004081 712 -ASEELQVL--EDHELAAEAFYLIAI-VFDKLGRLAEREEAAALFKEYV 756 (775)
Q Consensus 712 -Al~~f~~l--~~~~~~~evl~~LA~-l~~~lGd~~~A~~aAa~f~ql~ 756 (775)
=.+++.+. +.+ .+.+.+...|. -|..+|+...|+.+-..|.+-.
T Consensus 171 ~l~~w~~~~~~~~~-~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 171 LLWDWLCQVDDIED-STVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHHHHHTTCCCH-HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 12333333 444 44565555554 4678999999999777666554
No 220
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.08 E-value=2.5 Score=45.22 Aligned_cols=162 Identities=8% Similarity=-0.059 Sum_probs=109.1
Q ss_pred HHHhcCHH-HHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhc--------CCHHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 486 LAVFKGYK-EAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR--------GHLKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 486 la~~G~y~-eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~--------G~~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
....|+|. +|+...+.++..-|.. ..+|..+-.++ ..+.. ..+.++..++..++...+ .
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~--ytaWn~Rr~iL--~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-------K- 106 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDF--ATLWNCRREVL--QHLETEKSPEESAALVKAELGFLESCLRVNP-------K- 106 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHH--HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-------T-
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh--HHHHHHHHHHH--HHhcccccchhhhHHHHHHHHHHHHHHHhCC-------C-
Confidence 34567765 7888888877665532 23454432111 11111 127788899998887533 1
Q ss_pred HHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHhCC
Q 004081 557 KTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA-VLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~G--d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~-~~Al~~l~~AL~la~~~g~ 633 (775)
-..++..++.++...| +++++++.+++++. .......++..++.+....|.+ +.++..+.+++..--..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N-- 178 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLE------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-- 178 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--
Confidence 3467888999999999 48999999999986 2345578888899999999984 89999999888764221
Q ss_pred cHHHHHHHHHHHHHHHHcCC------------ChHHHHHHHHHHHHhHHH
Q 004081 634 DLLKASATLTLAELWLSFGP------------NHAKMASNLIQQALPLIL 671 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~------------~~f~~Al~lLe~aLp~il 671 (775)
..|....+.++..++. ..++++++.+..++..--
T Consensus 179 ----~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 179 ----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp ----HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST
T ss_pred ----HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC
Confidence 2445556666665521 124788888888876643
No 221
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=92.91 E-value=0.72 Score=53.07 Aligned_cols=160 Identities=7% Similarity=-0.068 Sum_probs=112.9
Q ss_pred HhcC-HHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCC----------HHHHHHHHHHHhhhhhcCCCCChhh
Q 004081 488 VFKG-YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH----------LKLAQKVCDELGVMASSVTGVDMDL 556 (775)
Q Consensus 488 ~~G~-y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~----------~~~A~~~l~~ll~L~~~~~~~D~~~ 556 (775)
..|+ .++|+...+.+.+.-|.. ...|..+-.+ ....|+ +.++.+.+++++...+ .
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~--~taW~~R~~~----l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-------K- 105 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDF--ATLWNCRREV----LQHLETEKSPEESAALVKAELGFLESCLRVNP-------K- 105 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHH----HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-------T-
T ss_pred HcCCCCHHHHHHHHHHHHHCchh--HHHHHHHHHH----HHhcccccchhhhhhhHHHHHHHHHHHHHhCC-------C-
Confidence 3455 456788888888766532 3355544211 122344 9999999999998633 1
Q ss_pred HHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHhCC
Q 004081 557 KTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-NAVLGIPYALASLSFCQLLNL 633 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~G--d~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G-~~~~Al~~l~~AL~la~~~g~ 633 (775)
-..++..++.++...| ++++|++.++++++. ......++..++.+....| .+++++..+.+++...-.
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--- 176 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--- 176 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC---
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC---
Confidence 3568999999999999 779999999999973 2345788999999999999 888999999888765321
Q ss_pred cHHHHHHHHHHHHHHHHcCC------------ChHHHHHHHHHHHHhHHHhc
Q 004081 634 DLLKASATLTLAELWLSFGP------------NHAKMASNLIQQALPLILGH 673 (775)
Q Consensus 634 ~~~~A~al~~La~l~l~lG~------------~~f~~Al~lLe~aLp~il~~ 673 (775)
-..+....+.++..++. ..+++|++.++.++..--..
T Consensus 177 ---n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 177 ---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp ---CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred ---CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 23556667777766521 13588999999888765433
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.89 E-value=1.3 Score=50.05 Aligned_cols=161 Identities=10% Similarity=0.040 Sum_probs=106.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHhhcccc
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN---------QFSEAAAVAHSLFCMCYKFNLQ 594 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~G---------d~~eAl~~l~~aL~~~~~~gd~ 594 (775)
......|++++|.+++++.... .+ .|.. .+...+...+...| +.++|+++++++.. .|..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~--Gv---~pd~--~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~----~G~~ 102 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRN--GV---QLSQ--YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV----DKVV 102 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHH--TC---CCCH--HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----TTCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHc--CC---CCCH--hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----hCCC
Confidence 4567899999999999998873 22 2222 23333444444333 36788888887764 2332
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcC
Q 004081 595 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 674 (775)
Q Consensus 595 ~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G 674 (775)
....++..+-..+.+.|+++.|+..+.+... .|... -..+...|-..+...|+. ++|.+++++.... |
T Consensus 103 -Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~P-d~~tyn~lI~~~~~~g~~--~~A~~l~~~M~~~----G 170 (501)
T 4g26_A 103 -PNEATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQP-RLRSYGPALFGFCRKGDA--DKAYEVDAHMVES----E 170 (501)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHT----T
T ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-ccceehHHHHHHHHCCCH--HHHHHHHHHHHhc----C
Confidence 3345677777888999999999998876532 33321 123344556677889998 9999999886432 3
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004081 675 GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 714 (775)
Q Consensus 675 ~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~ 714 (775)
-. .-..+|..|-+++.. .|+.++|.+.|++-.+
T Consensus 171 ~~-Pd~~ty~~Li~~~~~------~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 171 VV-PEEPELAALLKVSMD------TKNADKVYKTLQRLRD 203 (501)
T ss_dssp CC-CCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHhh------CCCHHHHHHHHHHHHH
Confidence 22 223467777777777 8999999988887543
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.87 E-value=0.44 Score=45.28 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAAN---QFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~G---d~~eAl~~l~~aL~~~~~~gd-~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
..++.++.++.++..+ +..+++.+++.++. .+ +..+..++..+|..+.+.|+|.+|+.++.++|++-
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-----~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-----KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3578899999999988 77799999999887 23 44678899999999999999999999999888875
No 224
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.14 Score=57.90 Aligned_cols=181 Identities=14% Similarity=0.065 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHH--HHHh---hcccchhHHHHHHHHHHHHHhcCChhh----------HHH
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLF--CMCY---KFNLQVENASVLLLLAEIHKKSGNAVL----------GIP 619 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL--~~~~---~~gd~~~~a~aLl~lA~i~~~~G~~~~----------Al~ 619 (775)
+......++....++..++|++|.++...+. .... +.......++++.-.+.+|...|.... -.+
T Consensus 133 E~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~ 212 (523)
T 4b4t_S 133 EINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRS 212 (523)
T ss_dssp ----------------------------------------------------------------------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHH
Confidence 3344555566666788999999999887665 2222 222334457777777777777776543 356
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-HhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCC
Q 004081 620 YALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA-LPLILGHGGLELRARAFIAEAKCLLSDPSFSV 698 (775)
Q Consensus 620 ~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~a-Lp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~ 698 (775)
.+..++..+.-.++....+..++.|-..|+..+.. ++|..++..+ .|. ...+-...++.++-+|+++..
T Consensus 213 ~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y--~qA~~lvsk~~fP~--~~~sn~q~~rY~YY~GRI~a~------ 282 (523)
T 4b4t_S 213 TMMKFLKIASLKHDNETKAMLINLILRDFLNNGEV--DSASDFISKLEYPH--TDVSSSLEARYFFYLSKINAI------ 282 (523)
T ss_dssp HHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHCSCT--TTSCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcH--HHHHHHHhcCcCCc--ccCCHHHHHHHHHHHHHHHHH------
Confidence 77788888877888888899999999999999998 9999999988 332 224567789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHhcCCHHHH
Q 004081 699 SQNPEAVLDPLRQASEELQVL-EDHELAAEAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 699 ~g~~~~Al~~L~~Al~~f~~l-~~~~~~~evl~~LA~l~~~lGd~~~A 745 (775)
.+++.+|.++|..|+...-.- ........++-.+-.+-..+|+.+.+
T Consensus 283 q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r 330 (523)
T 4b4t_S 283 QLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPEL 330 (523)
T ss_dssp TTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred hccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCCh
Confidence 999999999999997532111 12223344444455555556776654
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.60 E-value=0.36 Score=41.51 Aligned_cols=67 Identities=19% Similarity=0.040 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 004081 558 TEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd---~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~ 630 (775)
++++...+.+++..++ .++|..++++++. ..+...++++.+|.++...|+|.+|+..+.+.+.....
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4678888888877776 7999999999997 34556889999999999999999999999998876543
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.31 E-value=3.3 Score=48.48 Aligned_cols=135 Identities=13% Similarity=-0.028 Sum_probs=79.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 004081 567 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 646 (775)
Q Consensus 567 ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 646 (775)
+.+..|++++|++.+... . .-..+..+|+...+.|+++.|...+.++-.... +..
T Consensus 661 ~~l~~~~~~~A~~~~~~~-------~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~--------------l~~ 715 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE-------S----AEMKWRALGDASLQRFNFKLAIEAFTNAHDLES--------------LFL 715 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH--------------HHH
T ss_pred hhhhcCCHHHHHHHHHhh-------C----cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhh--------------hHH
Confidence 456789999888876332 1 135778899999999999999888876544332 444
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH------HHHHHHHhcc
Q 004081 647 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR------QASEELQVLE 720 (775)
Q Consensus 647 l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~------~Al~~f~~l~ 720 (775)
++...|.. +.... +.......|+......++.. .|++++|++.+. +|+...++.+
T Consensus 716 l~~~~~~~--~~~~~----~~~~a~~~~~~~~A~~~~~~-------------~g~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 716 LHSSFNNK--EGLVT----LAKDAETTGKFNLAFNAYWI-------------AGDIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp HHHHTTCH--HHHHH----HHHHHHHTTCHHHHHHHHHH-------------HTCHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHcCCH--HHHHH----HHHHHHHcCchHHHHHHHHH-------------cCCHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 55557765 43222 33333444554433323222 466666666554 5666666665
Q ss_pred CHH-HHHHHHHHHHHHHHhcCCHHHH
Q 004081 721 DHE-LAAEAFYLIAIVFDKLGRLAER 745 (775)
Q Consensus 721 ~~~-~~~evl~~LA~l~~~lGd~~~A 745 (775)
... ...+++..-+.-....|+...|
T Consensus 777 ~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 777 LGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CChHHHHHHHHHHHHHHHhccchhHH
Confidence 433 3556666666655666664433
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.14 E-value=0.74 Score=39.90 Aligned_cols=71 Identities=15% Similarity=-0.043 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 004081 598 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 670 (775)
Q Consensus 598 a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~i 670 (775)
+.-...+|.++...|++..|...+.+|+....... .....+.++..||.++..+|+. ++|+.++++++...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~--~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL--DKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH--HHHHHHHHHHHhcC
Confidence 34456899999999999999999999998875432 1345667888999999999997 99999999998653
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.12 E-value=3.9 Score=42.97 Aligned_cols=86 Identities=10% Similarity=0.068 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 004081 575 SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-----GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 649 (775)
Q Consensus 575 ~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~-----G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l 649 (775)
.+|...++++++ .........++..+|.+|... |++++|..++.+||++.-... ..+....|+.++
T Consensus 180 ~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~l~ 250 (301)
T 3u64_A 180 HAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHHHH
Confidence 455555666655 344555678999999999995 999999999999999985322 356667788877
Q ss_pred H-cCCChHHHHHHHHHHHHhHHH
Q 004081 650 S-FGPNHAKMASNLIQQALPLIL 671 (775)
Q Consensus 650 ~-lG~~~f~~Al~lLe~aLp~il 671 (775)
. .|+. ++|.++|++++..=-
T Consensus 251 ~~~gd~--~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 251 IPLNNR--AGFDEALDRALAIDP 271 (301)
T ss_dssp TTTTCH--HHHHHHHHHHHHCCG
T ss_pred HhcCCH--HHHHHHHHHHHcCCC
Confidence 7 4887 999999999976543
No 229
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.62 E-value=1.1 Score=49.62 Aligned_cols=99 Identities=15% Similarity=-0.093 Sum_probs=71.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 604 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~l 604 (775)
.+...|++..|.+.+.++....... ....+..+..+++.+..||+..+...++++.......+++....+.....
T Consensus 140 ~~~~~Gd~~~A~~~~~~~~~~~~~~-----~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 140 YYAQIGDKDNAEKTLGKSLSKAIST-----GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHCCCTTHHHHHHHHHHHHTCC-----CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 3455666666666666666543321 23677788888888888888888888888877777777777777777777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHH
Q 004081 605 AEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 605 A~i~~~~G~~~~Al~~l~~AL~la 628 (775)
|.++...+++..|..++.++..-.
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhChHHHHHHHHHHHhccC
Confidence 888888888888888887765443
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.35 E-value=8.2 Score=36.42 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHhhhhhcCCCCC-hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 531 HLKLAQKVCDELGVMASSVTGVD-MDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 531 ~~~~A~~~l~~ll~L~~~~~~~D-~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
+..++..+++.+... | |....+++++++..+.+.|+|++|+++++.+++
T Consensus 50 ~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 50 DIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 677888888888773 4 656789999999999999999999999999997
No 231
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.17 E-value=37 Score=35.79 Aligned_cols=101 Identities=10% Similarity=-0.033 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHhCC-cHHH
Q 004081 560 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLG-IPYALASLSFCQLLNL-DLLK 637 (775)
Q Consensus 560 a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~A-l~~l~~AL~la~~~g~-~~~~ 637 (775)
.++.-+..++..|++..|.++..-+++...+.+...... ....+..++......+.. ...+.+|+..+.+.|. +.+.
T Consensus 55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~-~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gd 133 (312)
T 2wpv_A 55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDI-SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGD 133 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHH-HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCC
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCC
Confidence 444445666778888889888888887777666555433 344455666554433322 5667788888877754 6667
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHH
Q 004081 638 ASATLTLAELWLSFGPNHAKMASNLI 663 (775)
Q Consensus 638 A~al~~La~l~l~lG~~~f~~Al~lL 663 (775)
......+|..+..-|.. .+|..++
T Consensus 134 p~LH~~~a~~~~~e~~~--~~A~~H~ 157 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFV--YEAERYF 157 (312)
T ss_dssp HHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred HHHHHHHHHHHhhcCCH--HHHHHHH
Confidence 77777888888887765 7777766
No 232
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.65 E-value=1.4 Score=37.82 Aligned_cols=68 Identities=12% Similarity=-0.195 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 004081 597 NASVLLLLAEIHKKSGN---AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 672 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~---~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~ 672 (775)
...++..+|+++...++ ..+|..++.+||.+-.. ...++..||.++...|++ ++|+..++.++..--.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y--~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRF--QEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCC
Confidence 35677888888865655 68999999999998643 358888999999999998 9999999999876544
No 233
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.45 E-value=46 Score=35.42 Aligned_cols=180 Identities=13% Similarity=0.056 Sum_probs=107.1
Q ss_pred HHHcCCh---HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 004081 568 LLAANQF---SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 644 (775)
Q Consensus 568 l~~~Gd~---~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 644 (775)
.+..|+| =||...++.....+.+.+.....+..+..-|.++.+.|+...|-.+..--++...+.+.+.-. ..+-+|
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL 100 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKL 100 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHH
Confidence 3556666 666666655555444444444445556666667777777777776666666666666554433 345557
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhcCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH-----------HH
Q 004081 645 AELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR-----------QA 712 (775)
Q Consensus 645 a~l~l~lG~~~f~~Al~lLe~aLp~il~~G~-~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~-----------~A 712 (775)
..+...+...+.++ ..++++++-+-..+|+ ..+--..+..+|..++. .+++.+|..++- ..
T Consensus 101 ~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~------e~~~~~Ae~H~ilg~~~s~~~~a~m 173 (336)
T 3lpz_A 101 LGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE------EGEFEAAEKHLVLGTKESPEVLARM 173 (336)
T ss_dssp HHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH------TTCHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc------cCCHHHHHHHHHhcCCchHHHHHHH
Confidence 77777666532233 5677788777766432 23333455677777777 555555555441 11
Q ss_pred -HHHHHhccCHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHh
Q 004081 713 -SEELQVLEDHELAAEAFYLIAIV-FDKLGRLAEREEAAALFKEYVL 757 (775)
Q Consensus 713 -l~~f~~l~~~~~~~evl~~LA~l-~~~lGd~~~A~~aAa~f~ql~~ 757 (775)
.+++.+. . ..+.+.+...|.+ |..+|+...|+.+...|.+...
T Consensus 174 L~ew~~~~-~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~ 218 (336)
T 3lpz_A 174 EYEWYKQD-E-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALV 218 (336)
T ss_dssp HHHHHHTS-C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-C-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 2233322 2 3455655555554 6889999999998777776653
No 234
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=81.97 E-value=29 Score=38.66 Aligned_cols=162 Identities=11% Similarity=-0.068 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCC----C
Q 004081 476 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT----G 551 (775)
Q Consensus 476 a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~----~ 551 (775)
.......+..+..+|+.+.|..++++|... |... .+|.... .....++. ++.+........ .
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~--~l~~~y~-----~~~e~~~~------~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM--FLSLYYG-----LVMDEEAV------YGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS--HHHHHHH-----HHTTCTHH------HHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH--HHHHHHH-----hhcchhHH------HHHHHHHHHhhccchhh
Confidence 355666777778888999999999998888 5422 2222110 00001100 111111000000 0
Q ss_pred -CChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHH
Q 004081 552 -VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-NAVLGIPYALASLSFCQ 629 (775)
Q Consensus 552 -~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G-~~~~Al~~l~~AL~la~ 629 (775)
.-+.....+...-+....+.|+.+.|...++++ . ..+ ....+++..|.+-...| ++++|...+.+++...
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---~~~---~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~- 350 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G---NEG---VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH- 350 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T---TSC---CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h---CCC---CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 000112244455555656666677777777666 2 111 12345555555555555 4777777777766643
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 630 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 630 ~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
+... ......++....+|+. +.|+.+++.+
T Consensus 351 --~~~~---~~~~~yid~e~~~~~~--~~aR~l~er~ 380 (493)
T 2uy1_A 351 --PDST---LLKEEFFLFLLRIGDE--ENARALFKRL 380 (493)
T ss_dssp --TTCH---HHHHHHHHHHHHHTCH--HHHHHHHHHS
T ss_pred --CCCH---HHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 2111 1122244445556665 6666665553
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.55 E-value=43 Score=36.06 Aligned_cols=110 Identities=9% Similarity=-0.018 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcC-----c-----h-H--H--HHH-HHhhHHHHHHhcCCHHHHHHHHHHH
Q 004081 479 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-----K-----S-R--I--LLL-KLQLLHERSLHRGHLKLAQKVCDEL 542 (775)
Q Consensus 479 l~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~-----~-----~-~--~--~~l-~l~l~~~~al~~G~~~~A~~~l~~l 542 (775)
++.-+......|+.++|.+.+++|+..++.-- . . + . ..+ .+.-..+..+..|++.+|...+.++
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444445567899999999999998875421 1 0 0 0 001 1111225678899999999999988
Q ss_pred hhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-hhcccchh
Q 004081 543 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC-YKFNLQVE 596 (775)
Q Consensus 543 l~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~-~~~gd~~~ 596 (775)
... ||..+ .+...+..++.+.|+..+|++.++++-... ++.|..+.
T Consensus 198 ~~~-------~P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 198 TFE-------HPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHH-------STTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHh-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 775 33222 367778888899999999999998886643 44565443
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.92 E-value=27 Score=33.72 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=69.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH------HHhhcccchh
Q 004081 523 HERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC------MCYKFNLQVE 596 (775)
Q Consensus 523 ~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~------~~~~~gd~~~ 596 (775)
|+.++..|+++.|.+++..+. + ...+..++...+..|+++-|.+.+.++-. +....|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~---------~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~--- 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN---------D----SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGD--- 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---------C----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred HHHHHhcCCHHHHHHHHHHhC---------C----HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCC---
Confidence 368999999999999887652 1 24688899999999999999998876521 1111222
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHH------HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004081 597 NASVLLLLAEIHKKSGNAVLGIPYAL------ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 666 (775)
Q Consensus 597 ~a~aLl~lA~i~~~~G~~~~Al~~l~------~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~a 666 (775)
..-+..++.+-...|++..|+..+. +++++-.+.|.- .+|.. +|.. -|.. +.|.++++++
T Consensus 76 -~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~---~eA~~-~A~t---~g~~--~~a~~~~~~~ 141 (177)
T 3mkq_B 76 -VNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSL---PLAYA-VAKA---NGDE--AAASAFLEQA 141 (177)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH---HHHHH-HHHH---TTCH--HHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCCh---HHHHH-HHHH---cCcH--HHHHHHHHHh
Confidence 2333445555555555555544332 444444444421 12222 3333 3444 6666666655
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.91 E-value=17 Score=39.32 Aligned_cols=105 Identities=13% Similarity=-0.018 Sum_probs=70.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCCh--------------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDM--------------DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK 590 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~--------------~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~ 590 (775)
.....|+...|...+.+++.+++.--..|. +....+...++..+++.|++.+|+..+..++.
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~---- 199 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF---- 199 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 445678888888888888887653111110 12234555677888999999999999988875
Q ss_pred cccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHhCCcH
Q 004081 591 FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF-CQLLNLDL 635 (775)
Q Consensus 591 ~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l-a~~~g~~~ 635 (775)
.++..+ +++..+-.++.++|+...|+..+.++-.. ..+.|...
T Consensus 200 -~~P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 200 -EHPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp -HSTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred -hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 233332 24445555688999999999999877663 35555443
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=80.08 E-value=7 Score=41.01 Aligned_cols=87 Identities=10% Similarity=-0.066 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhhhhcCCCCChh-hHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081 532 LKLAQKVCDELGVMASSVTGVDMD-LKTEASLRHARTLLAA-----NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 605 (775)
Q Consensus 532 ~~~A~~~l~~ll~L~~~~~~~D~~-~~~~a~~~~a~ll~~~-----Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA 605 (775)
...|...+++++.+ ||. ....++..++.++... |+.+.|.+++++++++. +...+.+....|
T Consensus 179 l~~A~a~lerAleL-------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~~id~~v~YA 246 (301)
T 3u64_A 179 VHAAVMMLERACDL-------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAHDPDHHITYA 246 (301)
T ss_dssp HHHHHHHHHHHHHH-------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCCCchHHHHHH
Confidence 47788888899887 443 2456778888888885 99999999999999842 223478888899
Q ss_pred HHHHhc-CChhhHHHHHHHHHHHHHH
Q 004081 606 EIHKKS-GNAVLGIPYALASLSFCQL 630 (775)
Q Consensus 606 ~i~~~~-G~~~~Al~~l~~AL~la~~ 630 (775)
+.+... |+++.+..++.+|+..--.
T Consensus 247 ~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 247 DALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 988884 9999999999999887643
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=78.72 E-value=16 Score=34.61 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhcccchhH--HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC
Q 004081 575 SEAAAVAHSLFCMCYKFNLQVEN--ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG 652 (775)
Q Consensus 575 ~eAl~~l~~aL~~~~~~gd~~~~--a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG 652 (775)
+.-++.+++++....-.....++ +..++.-|.. ...+++++|...+..|+.++. .. |.+....|+-.++.|
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK----kF--AKiwi~~AqFEiRqg 108 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK----KF--AFVHISFAQFELSQG 108 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT----TB--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH----HH--HHHHHHHHHHHHHcc
Confidence 44455566655432221233333 6667777755 577999999999999999832 22 888888888888888
Q ss_pred CChHHHHHHHHHHHHhHH
Q 004081 653 PNHAKMASNLIQQALPLI 670 (775)
Q Consensus 653 ~~~f~~Al~lLe~aLp~i 670 (775)
.. .+|+.+|..++.+.
T Consensus 109 nl--~kARkILg~AiG~~ 124 (161)
T 4h7y_A 109 NV--KKSKQLLQKAVERG 124 (161)
T ss_dssp CH--HHHHHHHHHHHHTT
T ss_pred cH--HHHHHHHHHHhccC
Confidence 87 99999999998854
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.95 E-value=5.9 Score=36.23 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFSE---AAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~e---Al~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
...+.++.|+.++...+..+ ++.+++.++. .+.+..+..++..+|..+.+.|+|.+|+.++...|.+-
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~----~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 35688999999999888877 7777766654 12244678899999999999999999999998777764
No 241
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.95 E-value=17 Score=41.17 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=64.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 550 TGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 550 ~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
...|.++++..++++.+.++..+.|+.|..++.+..- -.........++-+.-+|.|+.-.++|.+|..++..|+..|.
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4458889999999999999999999999999988741 111112233478889999999999999999999999998774
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=72.55 E-value=32 Score=40.75 Aligned_cols=125 Identities=12% Similarity=-0.043 Sum_probs=77.4
Q ss_pred hcC-HHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhh----hhhcCCCCChh------hH
Q 004081 489 FKG-YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGV----MASSVTGVDMD------LK 557 (775)
Q Consensus 489 ~G~-y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~----L~~~~~~~D~~------~~ 557 (775)
.|+ ++.|...++...+..|...... ....+.+ ......+--+|..++.+.+. ....+...|.. ..
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~---~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 336 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITI---LDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCM 336 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHH---HTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHH---HHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcc
Confidence 556 6778888888776665432110 0001110 11111233445555544432 11112222211 12
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALA 623 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~ 623 (775)
...+...+..++.+|+|+-|++++.++.. -.+..+..+..||.+|...|+++.|+-.+.-
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~------~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTE------LALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHh------cCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 34677889999999999999999999875 3466799999999999999999999866543
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=71.74 E-value=21 Score=32.48 Aligned_cols=83 Identities=11% Similarity=0.054 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 004081 657 KMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVF 736 (775)
Q Consensus 657 ~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~ 736 (775)
..+.+.+++.++ .|. ....+.|.+|-+++.... ..+..+++..|+.-+. -+.|....+.+|.||..|
T Consensus 18 ~~~~~~y~~e~~----~~~--~s~~~~F~yAw~Lv~S~~---~~d~~~GI~lLe~l~~----~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 18 LKFEKKFQSEKA----AGS--VSKSTQFEYAWCLVRTRY---NDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHH----HSC--CCHHHHHHHHHHHTTSSS---HHHHHHHHHHHHHHTT----TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----cCC--CcHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHH
Confidence 445555555544 344 334566788878887111 2233457777777543 245789999999999999
Q ss_pred HhcCCHHHHHHHHHHH
Q 004081 737 DKLGRLAEREEAAALF 752 (775)
Q Consensus 737 ~~lGd~~~A~~aAa~f 752 (775)
-.+|++..|.++...+
T Consensus 85 yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHH
Confidence 9999999999866444
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.32 E-value=1.1e+02 Score=32.48 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHhC-CcHH
Q 004081 559 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLG-IPYALASLSFCQLLN-LDLL 636 (775)
Q Consensus 559 ~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~A-l~~l~~AL~la~~~g-~~~~ 636 (775)
+.++.-+..++..|++..|.++..-+++...+.+..... .....+..++.....-+.. ...+.+|+..+.+.| .+.+
T Consensus 56 dLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~G 134 (336)
T 3lpz_A 56 DILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAG 134 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCC
Confidence 345555666778888888888888777777766554443 3445566666555543222 456678888887765 4666
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004081 637 KASATLTLAELWLSFGPNHAKMASNLI 663 (775)
Q Consensus 637 ~A~al~~La~l~l~lG~~~f~~Al~lL 663 (775)
.......+|.++..-|.. .+|..++
T Consensus 135 dp~LH~~ig~~~~~e~~~--~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEF--EAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred CHHHHHHHHHHHHccCCH--HHHHHHH
Confidence 667777789988888765 8887776
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=69.42 E-value=13 Score=35.11 Aligned_cols=90 Identities=12% Similarity=-0.026 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcC
Q 004081 533 KLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG 612 (775)
Q Consensus 533 ~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G 612 (775)
+.-++.|+++.+..+.-....-..-...+.+-+.. ...+|.++|.+.++.++..++. . +.+++..|+.-.+.|
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk----F--AKiwi~~AqFEiRqg 108 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK----F--AFVHISFAQFELSQG 108 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT----B--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH----H--HHHHHHHHHHHHHcc
Confidence 34444555554433221111222233444455544 5668999999999999886333 2 999999999999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q 004081 613 NAVLGIPYALASLSFCQ 629 (775)
Q Consensus 613 ~~~~Al~~l~~AL~la~ 629 (775)
+..+|...+-+|+.++.
T Consensus 109 nl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 109 NVKKSKQLLQKAVERGA 125 (161)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhccCC
Confidence 99999999999998763
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.41 E-value=20 Score=33.46 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004081 557 KTEASLRHARTLLAANQFS---EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 627 (775)
Q Consensus 557 ~~~a~~~~a~ll~~~Gd~~---eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~l 627 (775)
...+.++.++.++...+.+ +++.+++.++. ..+..+..++..+|.-+.+.|+|.+|+.++...|++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-----~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-----HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4567888999998888666 45666665554 344467889999999999999999999888766655
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.36 E-value=72 Score=39.53 Aligned_cols=126 Identities=12% Similarity=0.019 Sum_probs=79.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh--------------
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-------------- 590 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-------------- 590 (775)
..+..|.++.+.++..-. + .++ + ..+.+|++++..|++++|.+++.++..-...
T Consensus 821 ~l~~~~~~~~~~~l~~~~----~----~~~---~-~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 821 KLFLFKQYNACMQLIGWL----N----SDP---I-AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHSCTTHHHHHHHHS----C----CCH---H-HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhc----c----CCc---H-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc
Confidence 445666666665533221 1 132 2 3488999999999999999999766321100
Q ss_pred ---cccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004081 591 ---FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQ 665 (775)
Q Consensus 591 ---~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~ 665 (775)
.....+...-+.....++.+.|.++-++.....|++.+. .+++.........+=..++.+|+. ++|...+-.
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~y--e~Ay~aL~~ 963 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKF--DAAHVALMV 963 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCS--GGGGHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCH--HHHHHHHHh
Confidence 000111223356667788899999999999888887642 344444454555666777888887 888777643
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=66.85 E-value=15 Score=43.68 Aligned_cols=59 Identities=27% Similarity=0.321 Sum_probs=50.0
Q ss_pred HHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004081 516 LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSL 584 (775)
Q Consensus 516 ~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~a 584 (775)
++..|. +-.+.+|+|+.|..+..++-..++ + .+..+..++.+|+.+|||+.|+-.++.+
T Consensus 339 LL~~Qa--~FLl~K~~~elAL~~Ak~AV~~aP-----s---eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQT--NFLLNRGDYELALGVSNTSTELAL-----D---SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHH--HHHHHTTCHHHHHHHHHHHHHHCS-----S---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHH--HHHhccCcHHHHHHHHHHHHhcCc-----h---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445554 456789999999999999988755 3 6899999999999999999999998876
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.71 E-value=20 Score=32.95 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 558 TEASLRHARTLLAANQFS---EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~---eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
..+.++.|+.++...+.. +++.+++.++. .....+..++..+|.-+.+.|+|.+|+.++...|.+-
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-----~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 467888899988887654 56666666654 2345678899999999999999999999887666553
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.65 E-value=25 Score=32.41 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004081 533 KLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 586 (775)
Q Consensus 533 ~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~ 586 (775)
.++..++..+..- +++..-+.++.+|.-+.+.|+|++|++.++.+|.
T Consensus 60 ~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555542 4556889999999999999999999999999986
No 251
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=66.17 E-value=18 Score=34.33 Aligned_cols=76 Identities=5% Similarity=-0.088 Sum_probs=50.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHH-HHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHH
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS-LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV 600 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~-~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~a 600 (775)
..++.|+|-+|.+.++.+-.-...-+......+..+. ...+.++.+.|+...|..++.+++...........-+.+
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv 117 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDL 117 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCH
Confidence 6778899999998888877632211000112334555 556778899999999999999999877655443333333
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=64.49 E-value=1e+02 Score=29.58 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=64.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
|++.+++ +.+..|+++.|++.++.+ ..-..+..+|..-+..|++.-|...+.++-+...
T Consensus 7 D~~~rF~-------LAL~lg~l~~A~e~a~~l-----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~--- 65 (177)
T 3mkq_B 7 DPHIRFD-------LALEYGNLDAALDEAKKL-----------NDSITWERLIQEALAQGNASLAEMIYQTQHSFDK--- 65 (177)
T ss_dssp CHHHHHH-------HHHHTTCHHHHHHHHHHH-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH---
T ss_pred ChHHHHH-------HHHhcCCHHHHHHHHHHh-----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH---
Confidence 6666555 347899999999987654 1244678899999999999998888876665554
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHH
Q 004081 633 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE 686 (775)
Q Consensus 633 ~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~L 686 (775)
|--++...|.. +. +.....+....|+....-..++.+
T Consensus 66 -----------L~~Ly~~tg~~--e~----L~kla~iA~~~g~~n~af~~~l~l 102 (177)
T 3mkq_B 66 -----------LSFLYLVTGDV--NK----LSKMQNIAQTREDFGSMLLNTFYN 102 (177)
T ss_dssp -----------HHHHHHHHTCH--HH----HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------HHHHHHHhCCH--HH----HHHHHHHHHHCccHHHHHHHHHHc
Confidence 55566678874 32 223333445556766665555444
No 253
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=63.09 E-value=1.1e+02 Score=33.81 Aligned_cols=131 Identities=10% Similarity=-0.046 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCCh
Q 004081 475 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 554 (775)
Q Consensus 475 ~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~ 554 (775)
...+....+....+.|+++.|..+++.| ..+.. ....|.-...+ +.. ..++.+.|+.+++.++..++ .++
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~-~~~v~i~~A~l--E~~-~~~d~~~ar~ife~al~~~~----~~~ 354 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL--GNEGV-GPHVFIYCAFI--EYY-ATGSRATPYNIFSSGLLKHP----DST 354 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCC-CHHHHHHHHHH--HHH-HHCCSHHHHHHHHHHHHHCT----TCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCC-ChHHHHHHHHH--HHH-HCCChHHHHHHHHHHHHHCC----CCH
Confidence 3455666666666788999999999988 44432 23344322222 222 23479999999999988643 133
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 555 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 555 ~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
. .....+......|+.+.|..+++++. ....++......-...|+.+.+...+.+++...+
T Consensus 355 ~----~~~~yid~e~~~~~~~~aR~l~er~~----------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 355 L----LKEEFFLFLLRIGDEENARALFKRLE----------KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp H----HHHHHHHHHHHHTCHHHHHHHHHHSC----------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 2 33445777788999999888887762 1234444455555566888888888888777554
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.05 E-value=37 Score=35.00 Aligned_cols=120 Identities=13% Similarity=-0.094 Sum_probs=67.3
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHH
Q 004081 486 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 565 (775)
Q Consensus 486 la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a 565 (775)
+...|..++|++.+....+.-|...+.+... |+.....|+|..|...+..+..+ ||.....+...+-
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~L------fqLLcv~G~w~RA~~QL~~~a~l-------~p~~~~~a~~yr~ 73 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSF------IELLCIDGDFERADEQLMQSIKL-------FPEYLPGASQLRH 73 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHH-------CGGGHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHh-------CchhhHHHHHHHH
Confidence 4567888888888887776665433333222 24566779999999888888887 4444444433222
Q ss_pred HHHHHcCChHHHHHHHH-HHHHHHhh---cccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004081 566 RTLLAANQFSEAAAVAH-SLFCMCYK---FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 628 (775)
Q Consensus 566 ~ll~~~Gd~~eAl~~l~-~aL~~~~~---~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la 628 (775)
.+... ..+ +.+.--+. .|. ...-...+..+......|+.+.|...-.+|++.+
T Consensus 74 lI~aE---------~~R~~vfaG~~~P~~~g~-~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 74 LVKAA---------QARKDFAQGAATAKVLGE-NEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHH---------HHHHHHTTSCCCEECCCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHH---------HHHHHHHcCCCCCCCCCC-CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 21100 011 11110000 111 1223346667777778888888888877777664
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=58.79 E-value=72 Score=39.20 Aligned_cols=106 Identities=9% Similarity=-0.076 Sum_probs=73.4
Q ss_pred CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-hcCchHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcC
Q 004081 471 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL-SVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSV 549 (775)
Q Consensus 471 ~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~-~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~ 549 (775)
..++.-..+..|...+++.|+.++|..++++..+.-. ....+. ....++..-+...|++++|.+++++...- .
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv---vTYNtLI~Glck~G~~~eA~~Lf~eM~~~--G- 195 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL---DMYNAVMLGWARQGAFKELVYVLFMVKDA--G- 195 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T-
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHHc--C-
Confidence 4557778899999999999999999999987765321 111111 11222224567899999999999999773 2
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 004081 550 TGVDMDLKTEASLRHARTLLAANQF-SEAAAVAHSLFC 586 (775)
Q Consensus 550 ~~~D~~~~~~a~~~~a~ll~~~Gd~-~eAl~~l~~aL~ 586 (775)
..|+. .....+...+.+.|+. ++|.++++++..
T Consensus 196 --~~PDv--vTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 196 --LTPDL--LSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp --CCCCH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --CCCcH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 23333 3445556677888885 788899988875
No 256
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.25 E-value=1.4e+02 Score=32.16 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=74.0
Q ss_pred HhcCHHHHHHHHHHHHHHhhhcC----------c--hHHHHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChh
Q 004081 488 VFKGYKEAFSALKIAEEKFLSVS----------K--SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 555 (775)
Q Consensus 488 ~~G~y~eAl~~L~~a~~~f~~~~----------~--~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~ 555 (775)
...++.+|++.|+.....+.... . .....+.+++. ..++..|+...|...++.+.......++.++.
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~-~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIA-RTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 35678899999987765442110 0 11223333322 56788999999999999999988888877777
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 556 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 556 ~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
..+......+.++...++|.++....-..+..+.
T Consensus 167 v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 7788888889999999999999888777776554
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=53.50 E-value=36 Score=31.71 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004081 678 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 752 (775)
Q Consensus 678 l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f 752 (775)
....+.|.+|-|++.+.. ..+..+++..|+.-+. ..+....+.+|.||..|-.+|++..|.++...+
T Consensus 37 vs~~t~F~YAw~Lv~S~~---~~di~~GI~LLe~l~~-----~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTD---VNDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp SCHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHH-----HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHh-----cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445677888888887221 2334577777777554 345578899999999999999999999876444
No 258
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=52.14 E-value=29 Score=29.79 Aligned_cols=67 Identities=9% Similarity=-0.117 Sum_probs=43.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccch
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV 595 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~ 595 (775)
..+..|+|-+|.+.++.+-.-.+ ++...-.+..+....+.++.+.|+. |..++.+++..........
T Consensus 10 ~lfn~g~~~eaHEvlE~~W~~~~--~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~~ 76 (94)
T 2cwy_A 10 GLWRAGRYYEVHEVLEPYWLKAT--GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCPL 76 (94)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSSB
T ss_pred HHHhCCChHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCcc
Confidence 56677888888888877766321 1111223445556667777788888 8888888887766555433
No 259
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=50.97 E-value=29 Score=29.84 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=47.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhC
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 632 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g 632 (775)
..+..+...|+|-+|.+.++..=...........+.-+++..|..|.+.|+. |...+.+|+..-....
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 4456677889999999999887654321111223444566677778888998 8888988888665443
No 260
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.30 E-value=1.2e+02 Score=29.90 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=66.4
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 004081 569 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 648 (775)
Q Consensus 569 ~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 648 (775)
++-.|.+.|+-++.++++ .||+.-.+|=++..|.=-....+| .|+..+..|...+...|.+-. +.-+.-+-++
T Consensus 25 iRGSDpDAAly~LaRml~----~GDp~~IaRRLvi~AsEDIGlAdP-~Al~~a~aa~~a~~~iG~PE~--~i~Laqaviy 97 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVE----AGDLASICRRLMVIGYEDIGLGNP-AAAARTVNAVLAAEKLGLPEA--RIPLADVVVD 97 (204)
T ss_dssp HHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTGGGCH-HHHHHHHHHHHHHHHHCTTTT--HHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 556677788888877776 466666677777776555555555 788888889999999998633 2233344555
Q ss_pred HHcCC-ChHHHHHHHHHHHHhHHHhcCC
Q 004081 649 LSFGP-NHAKMASNLIQQALPLILGHGG 675 (775)
Q Consensus 649 l~lG~-~~f~~Al~lLe~aLp~il~~G~ 675 (775)
+++-. . ..+...+..++..+...+.
T Consensus 98 LA~aPKS--Ns~y~A~~~A~~~v~~~~~ 123 (204)
T 2r9g_A 98 LCLSPKS--NSAYMALDAALADIREGKA 123 (204)
T ss_dssp HHHSCCC--CHHHHHHHHHHHHHHTTCC
T ss_pred HHcCCcc--HHHHHHHHHHHHHHHhcCC
Confidence 54433 3 5677788888888877654
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=49.70 E-value=4.3e+02 Score=32.09 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=10.5
Q ss_pred HHHhhCChHHHHHHHHHHH
Q 004081 231 MHFHFGHPKQALDVLTEAV 249 (775)
Q Consensus 231 lh~~FG~~~~A~~al~EAi 249 (775)
+....++.+.+...|...+
T Consensus 239 ~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 239 VVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3344556666666666654
No 262
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.83 E-value=32 Score=32.66 Aligned_cols=74 Identities=12% Similarity=-0.017 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc--ccchhHHHHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHh
Q 004081 558 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVL-LLLAEIHKKSGNAVLGIPYALASLSFCQLL 631 (775)
Q Consensus 558 ~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~--gd~~~~a~aL-l~lA~i~~~~G~~~~Al~~l~~AL~la~~~ 631 (775)
..-.+..+..+...|+|-+|.+.++.+=..+... .....+.-++ +..|..|.+.|+..-|..++.+|+..-...
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 3345667777888899999999998775422211 1112334445 557778899999999999999998876543
No 263
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=41.73 E-value=57 Score=28.01 Aligned_cols=37 Identities=22% Similarity=0.123 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 589 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~ 589 (775)
-|...+...-++++.+++.|+|++|++..+.+.....
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3666788889999999999999999999988876443
No 264
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=40.95 E-value=2.5e+02 Score=27.47 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=63.4
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 004081 569 LAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL 647 (775)
Q Consensus 569 ~~~Gd~~eAl~~l~~aL~~~~~~g-d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l 647 (775)
++-.|.+.|+-++.++++ .| |+.-.+|=++..|.=-....+| .|+..+..|...+...|.+- ++.-+.-+-+
T Consensus 18 iRGSDpDAAly~LaRMl~----~GEDp~~IaRRLvi~AsEDIGlAdP-~Al~~a~aa~~a~~~iG~PE--~~i~Laqavi 90 (201)
T 3bge_A 18 VRGSAPDAALYWYARILT----AGGDPLYVARRLLAIASEDVGNADP-RAMQVALAAWDCFTRVGAYE--GERAIAQAII 90 (201)
T ss_dssp HHTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHTTGGGCT-THHHHHHHHHHHHHHTCHHH--HHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHHCCcH--HHHHHHHHHH
Confidence 455677777777777765 34 5666666666666555555555 78888888889889888763 3344445556
Q ss_pred HHHcCC-ChHHHHHHHHHHHHhHHHhcC
Q 004081 648 WLSFGP-NHAKMASNLIQQALPLILGHG 674 (775)
Q Consensus 648 ~l~lG~-~~f~~Al~lLe~aLp~il~~G 674 (775)
++++-. . ..+...+..++..+...+
T Consensus 91 yLA~aPKS--Ns~y~A~~~A~~~v~~~~ 116 (201)
T 3bge_A 91 YLSVAPKS--NAVYTAFNTAKQQAKDLP 116 (201)
T ss_dssp HHHHSCCC--CHHHHHHHHHHHHHHHSC
T ss_pred HHHcCCcc--HHHHHHHHHHHHHHHhcC
Confidence 655443 3 556677777777776654
No 265
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.47 E-value=1.9e+02 Score=31.03 Aligned_cols=105 Identities=16% Similarity=-0.047 Sum_probs=79.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCC---------CCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccch
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVT---------GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV 595 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~---------~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~ 595 (775)
..-...+..+|.+++.++........ ..+.+....+....++.++..|+..+|...++++-......++..
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 34456788999999888755332110 112345677888999999999999999999999988777766654
Q ss_pred --hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004081 596 --ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 629 (775)
Q Consensus 596 --~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~ 629 (775)
.++......+..+...+++..+..++...+....
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 4566777888889999999998888888777654
No 266
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.64 E-value=94 Score=30.74 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=58.8
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 004081 569 LAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL 647 (775)
Q Consensus 569 ~~~Gd~~eAl~~l~~aL~~~~~~g-d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l 647 (775)
++-.|.+.|+-++.++++ .| |+.-.+|=++..|.=-....+| .|+..+..|...+...|++-. +.-+.-+-+
T Consensus 46 iRGSDpDAALywLaRMl~----~GEDp~~IaRRLvi~AsEDIGlAdP-~Al~~a~aa~~a~~~iG~PE~--~i~Laqavi 118 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVE----AGEDPNFIFRRLLISACEDIGLADP-NAIVVVQSCCDAFDRVGFPEG--LFFLSQASL 118 (213)
T ss_dssp HHTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHTTGGGST-THHHHHHHHHHHHHHHCTTTT--HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 455577777777777765 34 5666666666666555555555 788888888888888888633 223334455
Q ss_pred HHHcCCChHHHHHHHHHHHHhHHHhcC
Q 004081 648 WLSFGPNHAKMASNLIQQALPLILGHG 674 (775)
Q Consensus 648 ~l~lG~~~f~~Al~lLe~aLp~il~~G 674 (775)
++++-.- -..+ ..+..++..+...+
T Consensus 119 yLA~APK-SNs~-~A~~~A~~~v~~~~ 143 (213)
T 3ctd_A 119 YLAISPK-SNST-KSIFKAMEAIKATN 143 (213)
T ss_dssp HHHHSCC-CCGG-GHHHHHHHHHC---
T ss_pred HHHcCCc-cHHH-HHHHHHHHHHHhcC
Confidence 5554432 0344 66777777766543
No 267
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.46 E-value=3.3e+02 Score=26.34 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=66.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-c-----------c
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-F-----------N 592 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-~-----------g 592 (775)
.....|+|..|.-++..+- ...+.+....++-...||..|+..++..++.--+ - -
T Consensus 42 ~LyyngEY~R~Lf~L~~lN-------------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLN-------------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCC-------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred hhhhcchHhHHHHHHHhcc-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 4678899999987766542 3457889999999999999999999999852111 0 1
Q ss_pred cchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 004081 593 LQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 626 (775)
Q Consensus 593 d~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~ 626 (775)
++..+--....+|.+..++|..++|+.++..+-.
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 1122333688999999999999999999865543
No 268
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=32.87 E-value=3.1e+02 Score=33.79 Aligned_cols=91 Identities=9% Similarity=-0.119 Sum_probs=62.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhh-hcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 004081 524 ERSLHRGHLKLAQKVCDELGVMA-SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLL 602 (775)
Q Consensus 524 ~~al~~G~~~~A~~~l~~ll~L~-~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl 602 (775)
.-+...|+.++|..++....... .... .| ....+.++.-+...|+.++|+++++++.. .|.... ...+.
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~~-Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~----~G~~PD-vvTYn 204 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKL-LT----LDMYNAVMLGWARQGAFKELVYVLFMVKD----AGLTPD-LLSYA 204 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHTT-CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCCC-CC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCc-HHHHH
Confidence 56788999999999998765321 1111 13 24677788899999999999999999875 344333 33444
Q ss_pred HHHHHHHhcCCh-hhHHHHHHHH
Q 004081 603 LLAEIHKKSGNA-VLGIPYALAS 624 (775)
Q Consensus 603 ~lA~i~~~~G~~-~~Al~~l~~A 624 (775)
.+-..+.+.|+. ++|...+.+-
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHH
Confidence 444466777875 5677776544
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=30.90 E-value=3.8e+02 Score=27.46 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHH----HHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCC
Q 004081 477 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI----LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 552 (775)
Q Consensus 477 ~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~----~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~ 552 (775)
....-|..+++..|+++.|...|+.+.+..|....... .+.+.+. +..+..|. .. +..-+
T Consensus 32 ~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--R~~vfaG~----------~~---P~~~g- 95 (273)
T 1zbp_A 32 SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--RKDFAQGA----------AT---AKVLG- 95 (273)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH--HHHHTTSC----------CC---EECCC-
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH--HHHHHcCC----------CC---CCCCC-
Confidence 44566788899999999999999999888875433210 1111111 22333332 10 11111
Q ss_pred ChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004081 553 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 588 (775)
Q Consensus 553 D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~ 588 (775)
++ ......+..+....+.|+.++|.++-.++++..
T Consensus 96 ~~-~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 96 EN-EELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp SC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 22 246777888888899999999999999998754
No 270
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.13 E-value=1.5e+02 Score=32.73 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhh--cCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-Hhhcc----cch
Q 004081 523 HERSLHRGHLKLAQKVCDELGVMAS--SVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM-CYKFN----LQV 595 (775)
Q Consensus 523 ~~~al~~G~~~~A~~~l~~ll~L~~--~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~-~~~~g----d~~ 595 (775)
+..++..|+...|..++..+..-.. ....--........+..|++++..++|.+|.+.+.+++.. |.... ...
T Consensus 183 ~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~ 262 (455)
T 3t5v_B 183 NNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITR 262 (455)
T ss_dssp HHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhh
Confidence 4678899999999998887765311 1111112346778899999999999999999999999998 87431 122
Q ss_pred hHHHHHHHHHHHHHhcCCh
Q 004081 596 ENASVLLLLAEIHKKSGNA 614 (775)
Q Consensus 596 ~~a~aLl~lA~i~~~~G~~ 614 (775)
.+..++..+--+.+-.|+.
T Consensus 263 n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 263 NGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 2334444444444555654
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.93 E-value=2.7e+02 Score=33.67 Aligned_cols=115 Identities=12% Similarity=0.016 Sum_probs=67.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh--------------
Q 004081 525 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-------------- 590 (775)
Q Consensus 525 ~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~-------------- 590 (775)
..+..|.++-|.+ +....+ .++ + ..+.+|++++..|++++|.++++++..-...
T Consensus 819 ~L~~~~~~~~a~e----L~~~~~----~t~---~-~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 819 KLFLFKQYNACMQ----LIGWLN----SDP---I-AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp HHHHTTCHHHHHH----HGGGCC----SSH---H-HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHH
T ss_pred HHHHhcHHHHHHH----HHhhcC----CCh---H-HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhc
Confidence 5667788876654 333322 132 2 3588999999999999999999876421100
Q ss_pred ---cccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC
Q 004081 591 ---FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG 652 (775)
Q Consensus 591 ---~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG 652 (775)
.........-+.....++.+.|.++-++..+..|+..+. ..++.........+=...+++|
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 000001112355666777777777777777777776542 3445555555555555554444
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.63 E-value=2.7e+02 Score=30.71 Aligned_cols=111 Identities=9% Similarity=0.083 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhH----HHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH-H
Q 004081 642 LTLAELWLSFGPNHAKMASNLIQQALPL----ILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE-L 716 (775)
Q Consensus 642 ~~La~l~l~lG~~~f~~Al~lLe~aLp~----il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~-f 716 (775)
..|-.+|..+|.. .-+..++..+=.. -...-....+++.++-+|+.++- .+++.+|-++|.+|+.. .
T Consensus 180 n~L~kiYFkl~~~--~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~------~~~y~~A~~~L~~A~~~lc 251 (455)
T 3t5v_B 180 NKLNNIYFRIESP--QLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL------NSQVHNAFVQFNEAFQSLL 251 (455)
T ss_dssp HHHHHHHHHSSCC--TTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH--HHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH------HccHHHHHHHHHHHHHhcC
Confidence 3466888888888 6777766544221 13345677999999999999999 99999999999999987 4
Q ss_pred Hhc-c---CHHHHHHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHHHhhhc
Q 004081 717 QVL-E---DHELAAEAFYLIAIVFDKLGRLAEREE--------AAALFKEYVLALE 760 (775)
Q Consensus 717 ~~l-~---~~~~~~evl~~LA~l~~~lGd~~~A~~--------aAa~f~ql~~~~~ 760 (775)
-.- + .......++..+--+...+|+.+...- -...|..+..++.
T Consensus 252 p~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr 307 (455)
T 3t5v_B 252 NLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVR 307 (455)
T ss_dssp HCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHH
Confidence 322 1 234445677788778888887655422 1223666665554
No 273
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.24 E-value=2.5e+02 Score=34.74 Aligned_cols=129 Identities=14% Similarity=0.003 Sum_probs=82.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHH----------------
Q 004081 563 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS---------------- 626 (775)
Q Consensus 563 ~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~---------------- 626 (775)
.+...++..|.++-|.++. ..|.. ..-.-..+|.++...|++++|..++.+|..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~----~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~ 886 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLI----GWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQ 886 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHH----HHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHh----hhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccc
Confidence 3455678888887776644 22221 112237799999999999999999976521
Q ss_pred -HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004081 627 -FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 705 (775)
Q Consensus 627 -la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~A 705 (775)
+..........+.=..++..+....|.. +.+.+....++... ..++...+...+..+=+.++. .|++++|
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~--~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~------l~~ye~A 957 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAY--IDALEFSLLADASK-ETDDEDLSIAITHETLKTACA------AGKFDAA 957 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCC--HHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHH------HCCSGGG
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHh------hCCHHHH
Confidence 1111111111122245566777788888 88888888887653 346666676667777777887 7777776
Q ss_pred HHHHH
Q 004081 706 LDPLR 710 (775)
Q Consensus 706 l~~L~ 710 (775)
...|-
T Consensus 958 y~aL~ 962 (1139)
T 4fhn_B 958 HVALM 962 (1139)
T ss_dssp GHHHH
T ss_pred HHHHH
Confidence 66653
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=26.84 E-value=6.3e+02 Score=28.88 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHhh-cCCHH
Q 004081 148 SSFSLNAFELILRQLQKLAPELHRVHFLR--YLNSLY-HDDYF 187 (775)
Q Consensus 148 ~~~~~~~l~~~~~~l~~~~p~~~~~h~l~--yl~~~~-~~dy~ 187 (775)
+..++. .+...+..+|+.|-...|+ ||+.+- .+|..
T Consensus 51 ~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 51 MNQPAV----TVTNFVRANPTLPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp GGCCHH----HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccCCHH----HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHH
Confidence 344656 4555677789998776664 666663 56644
No 275
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.30 E-value=1.2e+02 Score=26.60 Aligned_cols=34 Identities=15% Similarity=-0.066 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 507 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~ 507 (775)
+.++..+--|...++.|+|++|...++++.+.+.
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~ 51 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGSCIA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5567778888889999999999999999998663
No 276
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=22.27 E-value=6.5e+02 Score=27.38 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHhc
Q 004081 699 SQNPEAVLDPLRQASEELQVL-EDHELAAEAFYLIAIVFDKL 739 (775)
Q Consensus 699 ~g~~~~Al~~L~~Al~~f~~l-~~~~~~~evl~~LA~l~~~l 739 (775)
.+.++.|+..++.-...|+.. -+....++++..+|.+|...
T Consensus 105 g~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~I 146 (436)
T 2yin_A 105 GKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYESI 146 (436)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999984 99999999999999999854
No 277
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.20 E-value=1.2e+02 Score=26.46 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004081 474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKF 506 (775)
Q Consensus 474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f 506 (775)
+.++..+--|...++.|+|++|...++++.+.+
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 48 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQSRMAL 48 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 557777888888999999999999999998766
No 278
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=22.05 E-value=1.8e+02 Score=31.76 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc
Q 004081 699 SQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 739 (775)
Q Consensus 699 ~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~l 739 (775)
.+.++.|+..++.....|+...+....++++..++.+|...
T Consensus 101 g~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~I 141 (428)
T 2wm9_A 101 AERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKV 141 (428)
T ss_dssp TTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999999876
Done!