Query 004082
Match_columns 775
No_of_seqs 259 out of 917
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 13:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpi_A CCR4-NOT transcription 99.9 1.4E-21 4.7E-26 172.0 10.8 102 101-204 6-107 (111)
2 4fxv_A ELAV-like protein 1; RN 99.7 2E-17 6.9E-22 144.2 10.5 81 108-196 17-97 (99)
3 4f25_A Polyadenylate-binding p 99.7 1.4E-16 4.7E-21 141.2 10.1 81 110-200 5-85 (115)
4 3md1_A Nuclear and cytoplasmic 99.7 2.3E-16 8E-21 129.7 10.6 80 111-198 2-81 (83)
5 2lxi_A RNA-binding protein 10; 99.7 2.5E-17 8.7E-22 141.0 5.0 80 111-198 2-83 (91)
6 3s8s_A Histone-lysine N-methyl 99.7 2E-16 6.9E-21 140.7 11.0 82 109-198 5-86 (110)
7 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.9E-16 6.5E-21 131.3 10.0 81 110-198 6-86 (87)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.8E-16 9.5E-21 129.8 9.1 80 109-196 6-85 (85)
9 2lkz_A RNA-binding protein 5; 99.6 1.7E-16 5.8E-21 138.8 8.0 80 110-197 9-94 (95)
10 2dnz_A Probable RNA-binding pr 99.6 5.5E-16 1.9E-20 130.8 10.8 83 110-200 5-87 (95)
11 1p27_B RNA-binding protein 8A; 99.6 3.5E-16 1.2E-20 134.7 9.6 85 106-198 19-103 (106)
12 1whw_A Hypothetical protein ri 99.6 4.8E-16 1.6E-20 132.4 10.0 82 109-198 7-88 (99)
13 2cqc_A Arginine/serine-rich sp 99.6 5E-16 1.7E-20 130.7 9.9 82 108-197 13-94 (95)
14 4a8x_A RNA-binding protein wit 99.6 3.9E-16 1.3E-20 129.3 9.0 84 108-198 2-85 (88)
15 2x1f_A MRNA 3'-END-processing 99.6 5.3E-16 1.8E-20 132.0 9.9 81 110-198 2-82 (96)
16 2e5h_A Zinc finger CCHC-type a 99.6 7.9E-16 2.7E-20 129.6 10.7 83 106-196 12-94 (94)
17 2cq0_A Eukaryotic translation 99.6 6.9E-16 2.4E-20 132.6 10.3 84 107-198 12-95 (103)
18 3p5t_L Cleavage and polyadenyl 99.6 1.6E-16 5.3E-21 134.5 6.0 81 110-198 1-83 (90)
19 2do4_A Squamous cell carcinoma 99.6 1.2E-15 3.9E-20 130.5 11.5 84 106-198 13-96 (100)
20 3ns6_A Eukaryotic translation 99.6 1.1E-16 3.9E-21 138.5 5.1 81 110-198 6-93 (100)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.5E-16 1.5E-20 133.2 8.6 84 108-199 10-93 (102)
22 2la6_A RNA-binding protein FUS 99.6 7.3E-16 2.5E-20 131.8 9.8 81 108-196 11-99 (99)
23 2dgo_A Cytotoxic granule-assoc 99.6 8.8E-16 3E-20 134.3 10.2 83 108-198 13-95 (115)
24 2dgs_A DAZ-associated protein 99.6 1.2E-15 4E-20 130.3 10.6 82 109-199 9-90 (99)
25 2cq3_A RNA-binding protein 9; 99.6 1.7E-15 5.7E-20 130.2 11.2 83 108-200 13-95 (103)
26 1x5u_A Splicing factor 3B subu 99.6 7.6E-16 2.6E-20 132.4 9.1 85 109-201 14-98 (105)
27 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.1E-15 3.9E-20 131.2 10.0 80 109-198 14-93 (103)
28 1x5t_A Splicing factor 3B subu 99.6 5.8E-16 2E-20 130.9 7.9 81 110-198 5-86 (96)
29 2ywk_A Putative RNA-binding pr 99.6 1.1E-15 3.7E-20 129.0 9.4 80 109-197 15-94 (95)
30 1x5s_A Cold-inducible RNA-bind 99.6 7.5E-16 2.6E-20 131.8 8.5 83 109-199 11-93 (102)
31 1oo0_B CG8781-PA, drosophila Y 99.6 1E-15 3.4E-20 133.0 9.3 85 106-198 22-106 (110)
32 1x4h_A RNA-binding protein 28; 99.6 1.2E-15 4.1E-20 132.1 9.6 85 107-199 12-102 (111)
33 2cph_A RNA binding motif prote 99.6 1.3E-15 4.4E-20 131.1 9.6 83 108-198 13-97 (107)
34 2dnh_A Bruno-like 5, RNA bindi 99.6 1.9E-15 6.5E-20 129.9 10.6 82 108-198 13-97 (105)
35 2d9p_A Polyadenylate-binding p 99.6 1.7E-15 5.7E-20 130.2 10.1 81 108-198 13-93 (103)
36 2cpz_A CUG triplet repeat RNA- 99.6 1.1E-15 3.9E-20 133.9 9.2 83 108-198 23-105 (115)
37 2dnm_A SRP46 splicing factor; 99.6 8.6E-16 2.9E-20 132.0 8.3 84 107-198 10-93 (103)
38 3ucg_A Polyadenylate-binding p 99.6 1.3E-15 4.3E-20 126.9 8.9 81 109-198 5-85 (89)
39 2cpf_A RNA binding motif prote 99.6 1.2E-15 3.9E-20 129.8 8.9 85 109-198 4-88 (98)
40 2err_A Ataxin-2-binding protei 99.6 1.2E-15 4.2E-20 134.0 8.9 81 109-199 28-108 (109)
41 1p1t_A Cleavage stimulation fa 99.6 1E-15 3.5E-20 131.1 8.1 84 110-201 8-91 (104)
42 2dgx_A KIAA0430 protein; RRM d 99.6 1.3E-15 4.4E-20 130.5 8.7 82 109-198 8-90 (96)
43 2cpe_A RNA-binding protein EWS 99.6 1.6E-15 5.4E-20 132.3 9.3 85 106-198 11-103 (113)
44 3ulh_A THO complex subunit 4; 99.6 2.2E-15 7.6E-20 129.9 10.2 81 108-197 27-107 (107)
45 2jrs_A RNA-binding protein 39; 99.6 1.7E-15 5.9E-20 133.3 9.2 81 110-198 26-106 (108)
46 2a3j_A U1 small nuclear ribonu 99.6 1.4E-15 4.6E-20 139.8 8.8 84 108-199 27-111 (127)
47 2ek1_A RNA-binding protein 12; 99.6 9.5E-16 3.2E-20 129.3 7.1 80 110-197 15-94 (95)
48 2khc_A Testis-specific RNP-typ 99.6 1.6E-15 5.6E-20 133.2 8.4 80 109-196 39-118 (118)
49 2dgp_A Bruno-like 4, RNA bindi 99.6 1.6E-15 5.6E-20 130.5 8.1 83 108-198 11-96 (106)
50 1x4e_A RNA binding motif, sing 99.6 1E-15 3.4E-20 127.1 6.4 79 110-196 5-83 (85)
51 2cqp_A RNA-binding protein 12; 99.6 1.3E-15 4.6E-20 129.4 7.2 81 110-198 15-95 (98)
52 2kt5_A RNA and export factor-b 99.6 3.5E-15 1.2E-19 132.7 10.3 86 107-201 32-117 (124)
53 2div_A TRNA selenocysteine ass 99.6 1.5E-15 5.2E-20 129.3 7.6 83 108-198 7-94 (99)
54 3ex7_B RNA-binding protein 8A; 99.6 2E-15 6.8E-20 134.0 8.6 85 106-198 18-102 (126)
55 1u6f_A Tcubp1, RNA-binding pro 99.6 2.4E-15 8.1E-20 135.6 8.9 84 108-199 40-123 (139)
56 2ki2_A SS-DNA binding protein 99.6 5.5E-16 1.9E-20 129.9 4.4 84 111-203 2-85 (90)
57 2kxn_B Transformer-2 protein h 99.6 2.4E-15 8.4E-20 136.9 8.9 83 108-198 44-126 (129)
58 2fy1_A RNA-binding motif prote 99.6 3.4E-15 1.2E-19 133.0 9.6 81 109-198 6-86 (116)
59 2dgv_A HnRNP M, heterogeneous 99.6 3.1E-15 1.1E-19 125.5 8.8 79 110-198 8-86 (92)
60 2do0_A HnRNP M, heterogeneous 99.6 5.3E-15 1.8E-19 128.9 10.5 80 110-198 15-94 (114)
61 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.1E-15 1.1E-19 133.7 9.1 79 109-195 62-140 (140)
62 2wbr_A GW182, gawky, LD47780P; 99.6 2.4E-15 8.1E-20 133.2 8.1 73 110-196 7-79 (89)
63 3n9u_C Cleavage and polyadenyl 99.6 2.1E-15 7.1E-20 142.1 8.1 85 109-201 54-140 (156)
64 1x4a_A Splicing factor, argini 99.6 5E-15 1.7E-19 128.7 9.9 81 107-198 19-99 (109)
65 1s79_A Lupus LA protein; RRM, 99.6 3.2E-15 1.1E-19 131.8 8.6 81 107-197 8-88 (103)
66 2cq4_A RNA binding motif prote 99.6 2.3E-15 7.9E-20 131.8 7.7 82 108-198 23-104 (114)
67 1x4d_A Matrin 3; structural ge 99.6 2.8E-15 9.5E-20 133.6 8.3 77 108-198 13-92 (102)
68 2mss_A Protein (musashi1); RNA 99.6 1.8E-15 6.1E-20 122.9 6.3 75 112-195 1-75 (75)
69 1wi8_A EIF-4B, eukaryotic tran 99.6 5.5E-15 1.9E-19 127.4 9.4 82 108-198 13-94 (104)
70 1why_A Hypothetical protein ri 99.6 6.7E-15 2.3E-19 125.5 9.7 80 105-198 12-93 (97)
71 2dis_A Unnamed protein product 99.6 3.1E-15 1.1E-19 129.4 7.7 83 108-198 6-92 (109)
72 2dng_A Eukaryotic translation 99.6 6.5E-15 2.2E-19 126.8 9.6 80 109-198 14-93 (103)
73 3r27_A HnRNP L, heterogeneous 99.6 6.3E-15 2.1E-19 131.9 9.8 76 109-198 20-97 (100)
74 2cpj_A Non-POU domain-containi 99.6 5.9E-15 2E-19 126.2 9.2 81 106-200 11-91 (99)
75 1sjq_A Polypyrimidine tract-bi 99.6 2.8E-15 9.7E-20 135.0 7.5 79 109-201 15-95 (105)
76 2dhg_A TRNA selenocysteine ass 99.6 3.3E-15 1.1E-19 128.2 7.5 81 109-198 8-90 (104)
77 2diu_A KIAA0430 protein; struc 99.6 3.6E-15 1.2E-19 133.8 7.9 77 110-201 9-87 (96)
78 2cqd_A RNA-binding region cont 99.6 7.7E-15 2.6E-19 128.8 9.9 84 106-198 13-96 (116)
79 3s7r_A Heterogeneous nuclear r 99.6 8.2E-15 2.8E-19 122.1 9.4 78 109-195 10-87 (87)
80 1x5o_A RNA binding motif, sing 99.6 1.5E-14 5E-19 126.4 11.4 87 103-198 18-112 (114)
81 1x4b_A Heterogeneous nuclear r 99.6 6.1E-15 2.1E-19 129.5 9.0 80 110-198 27-106 (116)
82 2jwn_A Embryonic polyadenylate 99.6 6.6E-15 2.2E-19 130.3 9.2 81 110-199 36-116 (124)
83 2cq1_A PTB-like protein L; RRM 99.6 1.1E-14 3.6E-19 128.9 10.4 77 109-199 14-92 (101)
84 2la4_A Nuclear and cytoplasmic 99.6 4.4E-15 1.5E-19 127.1 7.7 75 110-198 27-101 (101)
85 2kn4_A Immunoglobulin G-bindin 99.6 5.7E-15 2E-19 135.4 8.9 83 108-198 68-150 (158)
86 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.1E-14 3.6E-19 134.3 10.5 82 109-198 38-119 (156)
87 2dh8_A DAZ-associated protein 99.6 3.6E-15 1.2E-19 128.5 6.8 84 107-199 13-96 (105)
88 3lqv_A PRE-mRNA branch site pr 99.6 7.1E-15 2.4E-19 128.6 8.8 78 110-198 8-85 (115)
89 2krb_A Eukaryotic translation 99.6 2.4E-15 8.2E-20 124.6 5.4 73 111-193 2-81 (81)
90 1wex_A Hypothetical protein (r 99.6 7.3E-15 2.5E-19 130.3 8.8 77 109-199 14-92 (104)
91 1x4g_A Nucleolysin TIAR; struc 99.6 7.6E-15 2.6E-19 127.8 8.6 77 109-199 24-100 (109)
92 1rk8_A CG8781-PA, CG8781-PA pr 99.6 9.3E-15 3.2E-19 136.6 9.8 87 104-198 66-152 (165)
93 2ytc_A PRE-mRNA-splicing facto 99.5 8.5E-15 2.9E-19 121.2 8.3 74 109-196 11-85 (85)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.5 5.2E-15 1.8E-19 127.6 7.2 81 108-198 17-98 (100)
95 1whx_A Hypothetical protein ri 99.5 6.7E-15 2.3E-19 130.2 7.8 75 110-198 10-84 (111)
96 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.8E-15 1.6E-19 120.3 6.4 75 112-195 2-76 (77)
97 1nu4_A U1A RNA binding domain; 99.5 6.8E-15 2.3E-19 124.5 7.6 82 109-198 7-89 (97)
98 2xnq_A Nuclear polyadenylated 99.5 1.6E-14 5.4E-19 124.7 10.0 74 109-198 21-95 (97)
99 2nlw_A Eukaryotic translation 99.5 6.1E-15 2.1E-19 128.5 7.4 78 110-197 15-99 (105)
100 2dgt_A RNA-binding protein 30; 99.5 1.9E-14 6.6E-19 121.5 10.1 76 107-198 7-82 (92)
101 2ad9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.3E-19 132.5 10.2 78 109-200 30-109 (119)
102 2dgw_A Probable RNA-binding pr 99.5 1.8E-14 6E-19 121.3 9.7 80 108-198 8-87 (91)
103 2hvz_A Splicing factor, argini 99.5 6E-15 2.1E-19 126.3 6.9 75 111-198 1-75 (101)
104 2e44_A Insulin-like growth fac 99.5 8.8E-15 3E-19 123.9 7.8 78 109-198 14-92 (96)
105 1x4c_A Splicing factor, argini 99.5 1.6E-14 5.4E-19 126.2 9.4 75 109-198 14-93 (108)
106 2e5j_A Methenyltetrahydrofolat 99.5 1E-14 3.6E-19 124.5 8.0 77 109-198 18-94 (97)
107 2rs2_A Musashi-1, RNA-binding 99.5 1.6E-14 5.3E-19 127.2 9.2 80 110-198 25-104 (109)
108 2dnq_A RNA-binding protein 4B; 99.5 1.8E-14 6.3E-19 121.2 9.2 73 110-198 8-80 (90)
109 1wg5_A Heterogeneous nuclear r 99.5 1.7E-14 6E-19 125.4 9.2 87 108-204 13-100 (104)
110 2cqg_A TDP-43, TAR DNA-binding 99.5 2.5E-14 8.7E-19 122.8 9.9 80 109-198 14-93 (103)
111 2m2b_A RNA-binding protein 10; 99.5 3.4E-15 1.2E-19 134.7 4.7 82 108-198 21-108 (131)
112 2fc9_A NCL protein; structure 99.5 2.7E-14 9.2E-19 122.2 9.4 78 109-198 14-91 (101)
113 2cpx_A Hypothetical protein FL 99.5 5E-15 1.7E-19 129.2 4.7 82 109-198 24-105 (115)
114 2cpy_A RNA-binding protein 12; 99.5 9.6E-15 3.3E-19 128.9 6.4 83 108-200 13-96 (114)
115 1x4f_A Matrin 3; structural ge 99.5 1.4E-14 4.8E-19 131.6 7.6 77 109-199 24-103 (112)
116 2dgu_A Heterogeneous nuclear r 99.5 2.2E-14 7.5E-19 123.8 8.4 74 109-198 10-83 (103)
117 2jvo_A Nucleolar protein 3; nu 99.5 2.9E-14 9.9E-19 125.8 9.3 75 108-198 29-103 (108)
118 2dnp_A RNA-binding protein 14; 99.5 2.6E-14 8.7E-19 120.3 8.4 75 108-198 7-81 (90)
119 2kvi_A Nuclear polyadenylated 99.5 2.1E-14 7.1E-19 122.7 7.9 76 109-200 9-85 (96)
120 1fxl_A Paraneoplastic encephal 99.5 4.7E-14 1.6E-18 126.5 10.6 110 110-238 2-111 (167)
121 3zzy_A Polypyrimidine tract-bi 99.5 4.8E-14 1.6E-18 131.5 10.9 76 111-198 29-106 (130)
122 2jvr_A Nucleolar protein 3; RN 99.5 1.4E-14 5E-19 130.3 7.2 78 109-198 27-105 (111)
123 3md3_A Nuclear and cytoplasmic 99.5 4.7E-14 1.6E-18 126.4 10.4 81 108-196 85-165 (166)
124 3pgw_S U1-70K; protein-RNA com 99.5 6.4E-14 2.2E-18 151.6 13.4 88 105-200 97-184 (437)
125 2cpd_A Apobec-1 stimulating pr 99.5 5E-14 1.7E-18 120.4 10.0 75 109-199 14-90 (99)
126 2i2y_A Fusion protein consists 99.5 2.4E-14 8.1E-19 131.2 8.4 79 107-198 70-148 (150)
127 2lea_A Serine/arginine-rich sp 99.5 1.2E-14 4.1E-19 133.1 6.0 86 106-199 43-128 (135)
128 1wel_A RNA-binding protein 12; 99.5 7.3E-15 2.5E-19 131.2 4.4 82 108-198 23-104 (124)
129 2e5i_A Heterogeneous nuclear r 99.5 6.3E-14 2.1E-18 129.2 10.6 75 112-199 27-103 (124)
130 2db1_A Heterogeneous nuclear r 99.5 2.1E-14 7.4E-19 128.2 7.3 80 109-198 16-98 (118)
131 2qfj_A FBP-interacting repress 99.5 5.7E-14 1.9E-18 132.0 10.6 82 109-198 124-205 (216)
132 1b7f_A Protein (SXL-lethal pro 99.5 5E-14 1.7E-18 127.2 9.5 110 110-238 3-112 (168)
133 1iqt_A AUF1, heterogeneous nuc 99.5 6.5E-15 2.2E-19 119.3 3.3 75 112-195 1-75 (75)
134 2cqh_A IGF-II mRNA-binding pro 99.5 2.5E-14 8.4E-19 120.8 6.9 75 109-198 7-83 (93)
135 3md3_A Nuclear and cytoplasmic 99.5 9.6E-14 3.3E-18 124.4 11.0 109 112-238 2-110 (166)
136 1fj7_A Nucleolin RBD1, protein 99.5 6.7E-15 2.3E-19 126.0 3.2 79 110-198 17-95 (101)
137 1e4u_A Transcriptional repress 99.5 8.8E-15 3E-19 125.1 3.9 68 3-75 8-75 (78)
138 2fc8_A NCL protein; structure 99.5 8.6E-14 2.9E-18 119.0 10.0 82 106-198 11-92 (102)
139 2g4b_A Splicing factor U2AF 65 99.5 5E-14 1.7E-18 128.0 8.8 79 110-196 94-172 (172)
140 3q2s_C Cleavage and polyadenyl 99.5 1.7E-14 5.9E-19 143.2 6.3 84 109-200 67-152 (229)
141 1x5p_A Negative elongation fac 99.5 9.4E-14 3.2E-18 118.6 9.9 75 108-198 13-87 (97)
142 1wg1_A KIAA1579 protein, homol 99.5 5.6E-14 1.9E-18 118.3 8.4 74 110-198 5-78 (88)
143 4f02_A Polyadenylate-binding p 99.5 5.6E-14 1.9E-18 135.2 9.5 79 110-198 103-181 (213)
144 1fjc_A Nucleolin RBD2, protein 99.5 3.9E-14 1.3E-18 120.0 7.4 77 109-198 15-91 (96)
145 1wez_A HnRNP H', FTP-3, hetero 99.5 5.4E-14 1.9E-18 123.1 8.4 82 106-198 11-92 (102)
146 1sjr_A Polypyrimidine tract-bi 99.5 6.3E-14 2.1E-18 135.5 9.3 76 111-198 47-124 (164)
147 2lcw_A RNA-binding protein FUS 99.2 3.1E-15 1E-19 131.6 0.0 81 110-198 7-95 (116)
148 1l3k_A Heterogeneous nuclear r 99.5 1.6E-13 5.5E-18 127.1 11.4 116 109-238 12-127 (196)
149 2f3j_A RNA and export factor b 99.5 6.1E-14 2.1E-18 134.3 8.7 87 108-203 86-172 (177)
150 2hgl_A HNRPF protein, heteroge 99.5 3.5E-14 1.2E-18 131.9 6.7 81 108-198 42-125 (136)
151 2lmi_A GRSF-1, G-rich sequence 99.5 2.2E-14 7.4E-19 125.4 4.8 80 109-198 10-92 (107)
152 1wf1_A RNA-binding protein RAL 99.5 5.7E-14 1.9E-18 122.5 7.3 73 110-198 27-100 (110)
153 2cjk_A Nuclear polyadenylated 99.5 5.9E-14 2E-18 126.9 7.4 80 110-198 87-166 (167)
154 4f02_A Polyadenylate-binding p 99.5 1.5E-13 5E-18 132.3 10.5 112 109-237 14-125 (213)
155 3tyt_A Heterogeneous nuclear r 99.5 1.2E-13 4E-18 134.5 9.8 77 109-198 3-80 (205)
156 2e5g_A U6 snRNA-specific termi 99.5 1E-13 3.5E-18 117.8 8.2 75 110-198 8-82 (94)
157 2xs2_A Deleted in azoospermia- 99.5 4.2E-14 1.4E-18 121.2 5.7 78 110-198 9-86 (102)
158 2yh0_A Splicing factor U2AF 65 99.5 1.1E-13 3.9E-18 128.3 9.1 83 108-198 112-194 (198)
159 3egn_A RNA-binding protein 40; 99.5 8.8E-14 3E-18 126.4 8.1 79 109-198 44-130 (143)
160 1b7f_A Protein (SXL-lethal pro 99.4 2.4E-13 8.2E-18 122.7 10.3 80 108-195 87-168 (168)
161 2dnn_A RNA-binding protein 12; 99.4 2.1E-13 7.2E-18 122.1 9.6 78 110-198 16-93 (109)
162 2qfj_A FBP-interacting repress 99.4 2E-13 6.9E-18 128.3 10.0 118 110-238 28-148 (216)
163 3nmr_A Cugbp ELAV-like family 99.4 2.7E-13 9.1E-18 122.9 9.9 80 107-195 92-174 (175)
164 1fxl_A Paraneoplastic encephal 99.4 3.3E-13 1.1E-17 121.0 9.8 80 108-195 86-167 (167)
165 3beg_B Splicing factor, argini 99.4 1.9E-13 6.4E-18 121.4 7.6 74 109-197 15-93 (115)
166 1l3k_A Heterogeneous nuclear r 99.4 3.7E-13 1.3E-17 124.7 9.6 80 110-198 104-183 (196)
167 2pe8_A Splicing factor 45; RRM 99.4 6.8E-13 2.3E-17 117.9 10.7 81 110-197 8-93 (105)
168 3d2w_A TAR DNA-binding protein 99.4 4.1E-13 1.4E-17 114.7 8.9 75 107-198 8-84 (89)
169 2cq2_A Hypothetical protein LO 99.4 2.1E-13 7.3E-18 124.6 6.5 75 110-198 25-106 (114)
170 2hzc_A Splicing factor U2AF 65 99.4 4.6E-13 1.6E-17 111.0 7.2 70 109-193 5-85 (87)
171 3pgw_A U1-A; protein-RNA compl 99.4 1E-12 3.6E-17 129.7 11.1 84 107-198 6-90 (282)
172 1fje_B Nucleolin RBD12, protei 99.4 8.9E-13 3E-17 120.7 9.7 78 108-198 97-174 (175)
173 2dha_A FLJ20171 protein; RRM d 99.4 1.7E-13 5.9E-18 125.4 4.8 78 110-197 23-104 (123)
174 2bz2_A Negative elongation fac 99.4 7E-13 2.4E-17 119.7 8.5 75 108-198 37-111 (121)
175 3smz_A Protein raver-1, ribonu 99.4 1.1E-12 3.9E-17 129.6 10.3 82 108-198 182-264 (284)
176 2hgn_A Heterogeneous nuclear r 99.4 1.8E-13 6E-18 127.8 3.8 78 110-198 46-123 (139)
177 2hgm_A HNRPF protein, heteroge 99.4 3.8E-13 1.3E-17 124.0 5.6 80 108-198 40-121 (126)
178 1qm9_A Polypyrimidine tract-bi 99.4 6.4E-13 2.2E-17 124.5 6.7 77 110-199 3-80 (198)
179 2dnl_A Cytoplasmic polyadenyla 99.4 9.8E-13 3.4E-17 116.1 7.5 80 110-197 8-87 (114)
180 2ghp_A U4/U6 snRNA-associated 99.3 1.1E-12 3.8E-17 130.1 8.4 83 108-198 208-291 (292)
181 3s6e_A RNA-binding protein 39; 99.3 1.9E-12 6.4E-17 117.4 8.8 73 131-212 35-108 (114)
182 3pgw_A U1-A; protein-RNA compl 99.3 2E-12 6.7E-17 127.8 9.7 75 109-196 206-281 (282)
183 1wf0_A TDP-43, TAR DNA-binding 99.3 5.9E-13 2E-17 111.6 5.0 74 109-199 4-79 (88)
184 3nmr_A Cugbp ELAV-like family 99.3 2.4E-12 8E-17 116.6 9.3 113 110-238 3-118 (175)
185 2voo_A Lupus LA protein; RNA-b 99.3 1.7E-12 5.8E-17 125.7 8.9 81 107-197 106-186 (193)
186 3v4m_A Splicing factor U2AF 65 99.3 2.3E-12 7.7E-17 114.4 8.6 64 131-197 33-96 (105)
187 2adc_A Polypyrimidine tract-bi 99.3 1.9E-12 6.4E-17 125.9 8.7 80 106-198 30-110 (229)
188 2dit_A HIV TAT specific factor 99.3 3.6E-12 1.2E-16 112.4 9.6 81 106-198 11-102 (112)
189 2cjk_A Nuclear polyadenylated 99.3 1.6E-12 5.3E-17 117.6 7.2 107 110-237 3-109 (167)
190 3u1l_A PRE-mRNA-splicing facto 99.3 1.4E-12 4.9E-17 132.3 7.5 77 108-198 132-229 (240)
191 1qm9_A Polypyrimidine tract-bi 99.3 1.8E-12 6.3E-17 121.4 7.2 77 109-198 119-197 (198)
192 3smz_A Protein raver-1, ribonu 99.3 5.1E-12 1.7E-16 124.9 10.6 114 109-238 94-208 (284)
193 3sde_A Paraspeckle component 1 99.3 4E-12 1.4E-16 126.1 9.6 101 106-237 18-118 (261)
194 1jmt_A Splicing factor U2AF 35 99.3 5.4E-13 1.8E-17 118.0 2.9 76 114-195 19-103 (104)
195 2ghp_A U4/U6 snRNA-associated 99.3 4E-12 1.4E-16 126.2 9.3 102 107-237 38-139 (292)
196 2j8a_A Histone-lysine N-methyl 99.3 2.3E-12 7.9E-17 121.9 6.8 78 111-196 3-94 (136)
197 2adc_A Polypyrimidine tract-bi 99.3 5.5E-12 1.9E-16 122.6 9.2 76 110-198 151-228 (229)
198 3ue2_A Poly(U)-binding-splicin 99.3 8.2E-12 2.8E-16 113.7 8.7 84 110-197 20-108 (118)
199 2g4b_A Splicing factor U2AF 65 99.2 1.1E-11 3.7E-16 112.6 7.8 104 109-238 3-117 (172)
200 2yh0_A Splicing factor U2AF 65 99.2 2.4E-11 8.4E-16 112.7 9.9 111 110-238 4-137 (198)
201 1fje_B Nucleolin RBD12, protei 99.2 3.6E-12 1.2E-16 116.7 3.6 111 109-238 12-122 (175)
202 3tyt_A Heterogeneous nuclear r 99.2 2.2E-11 7.5E-16 118.5 7.0 69 110-188 123-193 (205)
203 3sde_A Paraspeckle component 1 99.2 5E-11 1.7E-15 118.3 9.4 81 109-198 95-179 (261)
204 2d9o_A DNAJ (HSP40) homolog, s 99.0 2.3E-10 7.9E-15 101.6 6.9 64 120-198 27-90 (100)
205 3tht_A Alkylated DNA repair pr 99.0 2.3E-10 7.9E-15 121.6 7.8 77 110-200 18-101 (345)
206 3dxb_A Thioredoxin N-terminall 98.9 1.9E-09 6.4E-14 104.4 7.8 65 131-196 147-211 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.8 5.5E-09 1.9E-13 93.1 7.6 54 131-198 33-86 (91)
208 1owx_A Lupus LA protein, SS-B, 98.7 5E-08 1.7E-12 90.4 9.3 81 101-195 9-93 (121)
209 1ufw_A Synaptojanin 2; RNP dom 98.5 8.2E-08 2.8E-12 86.2 5.9 72 111-196 16-93 (95)
210 2ct2_A Tripartite motif protei 98.0 3.4E-06 1.2E-10 70.6 4.7 60 4-66 13-72 (88)
211 2l9w_A U4/U6 snRNA-associated- 97.9 1.7E-05 5.9E-10 73.5 7.4 69 111-193 22-95 (117)
212 2ecm_A Ring finger and CHY zin 97.8 2.1E-05 7.1E-10 60.7 4.4 53 3-61 2-54 (55)
213 3ztg_A E3 ubiquitin-protein li 97.7 2.6E-05 8.8E-10 66.4 3.9 50 4-60 11-60 (92)
214 2ect_A Ring finger protein 126 97.7 3.5E-05 1.2E-09 63.7 4.5 56 4-66 13-68 (78)
215 3ng2_A RNF4, snurf, ring finge 97.6 2E-05 7E-10 63.5 2.3 57 3-65 7-66 (71)
216 1g25_A CDK-activating kinase a 97.6 3.3E-05 1.1E-09 62.0 3.3 57 5-66 2-59 (65)
217 2ysl_A Tripartite motif-contai 97.6 3.7E-05 1.3E-09 62.5 3.3 55 4-65 18-72 (73)
218 2xeu_A Ring finger protein 4; 97.6 2.5E-05 8.4E-10 61.5 2.1 56 5-66 2-60 (64)
219 2ecv_A Tripartite motif-contai 97.6 8E-05 2.7E-09 61.4 5.2 58 4-65 17-74 (85)
220 2ea6_A Ring finger protein 4; 97.5 3.9E-05 1.3E-09 61.2 2.8 53 4-62 13-68 (69)
221 2ecw_A Tripartite motif-contai 97.5 7E-05 2.4E-09 61.7 4.3 58 4-65 17-74 (85)
222 1iym_A EL5; ring-H2 finger, ub 97.5 7.5E-05 2.6E-09 57.6 4.1 51 4-60 3-53 (55)
223 1x4j_A Ring finger protein 38; 97.5 3.6E-05 1.2E-09 63.4 2.3 53 4-63 21-73 (75)
224 2kiz_A E3 ubiquitin-protein li 97.4 9.4E-05 3.2E-09 59.7 4.0 52 4-62 12-63 (69)
225 2ep4_A Ring finger protein 24; 97.4 0.00011 3.8E-09 60.1 3.7 52 4-62 13-64 (74)
226 2d8t_A Dactylidin, ring finger 97.4 6E-05 2.1E-09 61.6 2.0 52 4-65 13-64 (71)
227 2vje_A E3 ubiquitin-protein li 97.3 0.00011 3.8E-09 60.0 2.7 54 1-62 3-57 (64)
228 1v87_A Deltex protein 2; ring- 97.3 0.00013 4.5E-09 64.2 3.4 59 4-63 23-95 (114)
229 1wey_A Calcipressin 1; structu 97.3 0.00025 8.6E-09 64.7 5.3 76 110-196 5-82 (104)
230 2ecn_A Ring finger protein 141 97.2 6.3E-05 2.2E-09 60.9 0.5 54 4-68 13-66 (70)
231 2l0b_A E3 ubiquitin-protein li 97.1 0.00014 4.9E-09 62.5 2.1 52 4-62 38-89 (91)
232 2ecy_A TNF receptor-associated 97.1 0.00033 1.1E-08 56.3 3.6 53 4-65 13-65 (66)
233 2djb_A Polycomb group ring fin 97.1 0.00043 1.5E-08 56.7 4.1 54 4-66 13-66 (72)
234 1chc_A Equine herpes virus-1 r 97.1 0.00044 1.5E-08 55.5 4.0 50 4-62 3-52 (68)
235 3l11_A E3 ubiquitin-protein li 97.0 0.0002 6.7E-09 63.5 2.1 50 4-62 13-62 (115)
236 1wwh_A Nucleoporin 35, nucleop 97.0 0.00079 2.7E-08 62.7 6.2 67 107-189 21-87 (119)
237 2y43_A E3 ubiquitin-protein li 97.0 0.00041 1.4E-08 59.9 4.1 52 5-65 21-72 (99)
238 2ckl_B Ubiquitin ligase protei 97.0 0.00023 7.9E-09 66.9 2.5 49 6-62 54-102 (165)
239 4ayc_A E3 ubiquitin-protein li 97.0 0.00022 7.4E-09 65.6 1.8 50 5-64 52-101 (138)
240 2ecl_A Ring-box protein 2; RNF 97.0 0.00043 1.5E-08 58.6 3.4 57 3-65 12-79 (81)
241 3fl2_A E3 ubiquitin-protein li 96.9 0.00061 2.1E-08 61.2 4.0 49 5-62 51-99 (124)
242 2egp_A Tripartite motif-contai 96.9 0.00042 1.5E-08 56.8 2.5 58 4-65 10-68 (79)
243 2csy_A Zinc finger protein 183 96.8 0.00084 2.9E-08 56.0 3.8 47 5-61 14-60 (81)
244 1jm7_A BRCA1, breast cancer ty 96.8 0.002 6.8E-08 56.1 6.3 55 5-66 20-74 (112)
245 2d8s_A Cellular modulator of i 96.8 0.00084 2.9E-08 57.7 3.8 57 3-63 12-71 (80)
246 3lrq_A E3 ubiquitin-protein li 96.7 0.00075 2.6E-08 59.0 3.3 55 5-67 21-75 (100)
247 2yur_A Retinoblastoma-binding 96.7 0.00083 2.8E-08 55.5 3.3 50 4-61 13-63 (74)
248 2kr4_A Ubiquitin conjugation f 96.7 0.0014 4.8E-08 56.2 4.7 51 5-65 13-63 (85)
249 1t1h_A Gspef-atpub14, armadill 96.7 0.00081 2.8E-08 55.4 3.0 53 4-65 6-58 (78)
250 2ea5_A Cell growth regulator w 96.6 0.0014 4.8E-08 54.3 4.0 48 2-63 11-59 (68)
251 4ap4_A E3 ubiquitin ligase RNF 96.6 0.0006 2.1E-08 60.3 1.7 57 4-66 5-64 (133)
252 2vje_B MDM4 protein; proto-onc 96.6 0.00075 2.6E-08 54.9 2.1 51 4-62 5-56 (63)
253 2ecg_A Baculoviral IAP repeat- 96.6 0.00072 2.5E-08 56.2 1.9 44 6-63 25-69 (75)
254 4ap4_A E3 ubiquitin ligase RNF 96.6 0.00079 2.7E-08 59.5 2.1 58 3-66 69-129 (133)
255 1z6u_A NP95-like ring finger p 96.5 0.0015 5.2E-08 61.5 3.6 50 5-63 77-126 (150)
256 3dpl_R Ring-box protein 1; ubi 96.4 0.002 6.8E-08 58.1 4.0 53 3-61 34-100 (106)
257 1rmd_A RAG1; V(D)J recombinati 96.4 0.0016 5.6E-08 57.6 3.4 53 5-66 22-74 (116)
258 1bor_A Transcription factor PM 96.4 0.0018 6.2E-08 51.2 3.1 47 3-62 3-49 (56)
259 2ckl_A Polycomb group ring fin 96.4 0.0016 5.4E-08 57.2 3.0 51 4-63 13-63 (108)
260 3hct_A TNF receptor-associated 96.3 0.0017 5.9E-08 58.0 2.9 53 4-65 16-68 (118)
261 2kre_A Ubiquitin conjugation f 96.3 0.0028 9.7E-08 56.2 4.3 51 5-65 28-78 (100)
262 1jm7_B BARD1, BRCA1-associated 96.3 0.0021 7E-08 57.4 3.2 49 5-64 21-69 (117)
263 1wim_A KIAA0161 protein; ring 96.1 0.0018 6.1E-08 55.8 1.9 61 4-66 3-70 (94)
264 2ysj_A Tripartite motif-contai 96.1 0.0041 1.4E-07 49.3 3.7 46 4-56 18-63 (63)
265 4ic3_A E3 ubiquitin-protein li 96.0 0.0016 5.3E-08 54.3 1.0 45 5-63 23-68 (74)
266 1wgm_A Ubiquitin conjugation f 96.0 0.0064 2.2E-07 53.7 4.8 51 5-65 21-72 (98)
267 3hcs_A TNF receptor-associated 96.0 0.0032 1.1E-07 59.3 2.9 53 4-65 16-68 (170)
268 2c2l_A CHIP, carboxy terminus 96.0 0.0036 1.2E-07 61.7 3.3 52 5-65 207-258 (281)
269 1vyx_A ORF K3, K3RING; zinc-bi 95.8 0.0064 2.2E-07 49.7 3.7 52 1-61 1-58 (60)
270 2yho_A E3 ubiquitin-protein li 95.8 0.0024 8.1E-08 54.3 1.0 52 5-70 17-69 (79)
271 4a0k_B E3 ubiquitin-protein li 95.6 0.0024 8.2E-08 58.9 0.4 53 3-61 45-111 (117)
272 2ecj_A Tripartite motif-contai 95.5 0.011 3.9E-07 45.5 3.9 46 4-56 13-58 (58)
273 1weo_A Cellulose synthase, cat 95.4 0.019 6.6E-07 51.5 5.5 53 5-62 15-70 (93)
274 1uw4_A UPF3X; nonsense mediate 95.3 0.062 2.1E-06 47.7 8.6 68 112-185 3-70 (91)
275 2y1n_A E3 ubiquitin-protein li 95.0 0.012 4E-07 64.1 3.6 52 6-66 332-383 (389)
276 1whv_A Poly(A)-specific ribonu 95.0 0.04 1.4E-06 50.2 6.4 56 110-181 15-70 (100)
277 3knv_A TNF receptor-associated 94.7 0.0047 1.6E-07 57.7 -0.4 48 4-60 29-76 (141)
278 3p3d_A Nucleoporin 53; structu 94.7 0.012 4.2E-07 55.7 2.3 80 109-193 6-94 (132)
279 3ctr_A Poly(A)-specific ribonu 94.5 0.035 1.2E-06 50.6 4.8 57 109-181 4-60 (101)
280 2f42_A STIP1 homology and U-bo 94.5 0.016 5.5E-07 57.0 2.8 51 5-65 105-156 (179)
281 3htk_C E3 SUMO-protein ligase 94.3 0.028 9.5E-07 58.6 4.2 52 6-65 181-235 (267)
282 3pq1_A Poly(A) RNA polymerase; 93.8 0.019 6.4E-07 63.8 1.8 54 111-178 54-107 (464)
283 2yu4_A E3 SUMO-protein ligase 93.4 0.13 4.4E-06 44.6 6.1 59 4-65 5-66 (94)
284 2i2y_A Fusion protein consists 93.1 0.034 1.2E-06 50.6 2.0 75 159-237 12-95 (150)
285 2dhx_A Poly (ADP-ribose) polym 91.7 0.42 1.4E-05 43.8 7.3 67 110-193 8-79 (104)
286 2ct0_A Non-SMC element 1 homol 90.5 0.25 8.5E-06 42.2 4.3 52 4-63 13-65 (74)
287 2kn4_A Immunoglobulin G-bindin 90.4 0.31 1.1E-05 44.3 5.2 76 159-237 12-92 (158)
288 2l08_A Regulator of nonsense t 90.1 0.47 1.6E-05 42.9 6.0 68 112-185 11-78 (97)
289 2bay_A PRE-mRNA splicing facto 89.8 0.16 5.4E-06 41.4 2.4 51 7-66 4-54 (61)
290 3k1l_B Fancl; UBC, ring, RWD, 81.4 0.76 2.6E-05 50.0 3.1 58 4-61 306-372 (381)
291 3nw0_A Non-structural maintena 80.6 1.2 4.1E-05 45.2 4.1 52 5-64 179-231 (238)
292 3d2q_A Muscleblind-like protei 75.3 0.95 3.3E-05 37.8 1.3 25 195-220 40-64 (70)
293 3d45_A Poly(A)-specific ribonu 71.1 5.7 0.00019 44.3 6.6 58 108-181 437-494 (507)
294 2d9n_A Cleavage and polyadenyl 69.3 2 6.8E-05 36.4 1.9 24 198-221 39-62 (77)
295 2jne_A Hypothetical protein YF 68.3 0.58 2E-05 42.6 -1.6 41 7-62 33-73 (101)
296 3u1l_A PRE-mRNA-splicing facto 67.5 1.1 3.8E-05 45.6 0.0 31 196-226 69-99 (240)
297 2jrp_A Putative cytoplasmic pr 65.1 1.1 3.9E-05 39.3 -0.4 41 7-62 3-43 (81)
298 2rhk_C Cleavage and polyadenyl 64.1 2 6.7E-05 36.3 0.9 23 199-221 46-68 (72)
299 3d2n_A Muscleblind-like protei 62.2 2.3 8E-05 37.0 1.0 26 195-221 41-66 (83)
300 3d2n_A Muscleblind-like protei 60.5 3.6 0.00012 35.8 1.9 23 199-222 11-35 (83)
301 2e5s_A Otthump00000018578; ZF- 55.3 3.1 0.00011 37.2 0.6 26 195-221 54-79 (98)
302 2rpp_A Muscleblind-like protei 54.3 3.3 0.00011 36.6 0.6 25 196-221 50-74 (89)
303 2zet_C Melanophilin; complex, 54.0 5 0.00017 38.6 1.8 49 5-58 67-116 (153)
304 1m9o_A Tristetraproline; Cys3H 48.2 11 0.00038 31.1 2.8 27 196-222 11-38 (77)
305 4g9i_A Hydrogenase maturation 46.6 1.3 4.6E-05 51.8 -4.0 32 160-193 222-253 (772)
306 3d2q_A Muscleblind-like protei 46.2 6.8 0.00023 32.6 1.2 22 199-221 8-31 (70)
307 2e5s_A Otthump00000018578; ZF- 45.7 3.6 0.00012 36.8 -0.5 23 199-222 22-46 (98)
308 2d9n_A Cleavage and polyadenyl 43.8 11 0.00036 31.9 2.1 26 196-222 9-35 (77)
309 3ttc_A HYPF, transcriptional r 43.2 1.6 5.6E-05 50.4 -3.9 32 160-193 133-164 (657)
310 1zbd_B Rabphilin-3A; G protein 43.1 9.6 0.00033 35.8 1.9 37 4-40 53-90 (134)
311 3vth_A Hydrogenase maturation 42.4 6.9 0.00024 46.0 1.0 53 5-62 110-173 (761)
312 2rpp_A Muscleblind-like protei 41.9 7.5 0.00026 34.4 0.9 24 199-223 19-44 (89)
313 2rhk_C Cleavage and polyadenyl 41.2 10 0.00035 32.0 1.6 26 196-222 15-41 (72)
314 2gmg_A Hypothetical protein PF 40.3 9.3 0.00032 35.1 1.3 28 26-64 70-98 (105)
315 4ayb_P DNA-directed RNA polyme 39.3 15 0.00052 29.6 2.2 17 9-25 6-22 (48)
316 3vk6_A E3 ubiquitin-protein li 37.8 15 0.00051 33.6 2.2 47 8-62 3-49 (101)
317 2cs3_A Protein C14ORF4, MY039 36.7 40 0.0014 30.1 4.6 53 2-58 11-66 (93)
318 2yko_A LINE-1 ORF1P; RNA-bindi 36.2 1.9E+02 0.0066 29.8 10.2 136 108-245 50-214 (233)
319 2csz_A Synaptotagmin-like prot 32.3 19 0.00065 31.4 1.9 33 4-36 23-56 (76)
320 2j9u_B VPS36, vacuolar protein 31.1 22 0.00074 31.2 2.0 25 7-31 18-49 (76)
321 1m9o_A Tristetraproline; Cys3H 27.6 13 0.00044 30.7 0.0 27 196-222 49-76 (77)
322 2jr7_A DPH3 homolog; DESR1, CS 24.3 12 0.00041 33.5 -0.8 32 22-58 22-53 (89)
323 1wge_A Hypothetical protein 26 23.9 15 0.0005 32.4 -0.3 32 22-58 29-60 (83)
324 2w7a_A LINE-1 ORF1P; RNA-bindi 22.5 2.4E+02 0.0082 25.5 7.3 84 109-193 2-98 (100)
325 1v33_A DNA primase small subun 21.2 31 0.0011 37.4 1.5 29 14-42 114-143 (366)
No 1
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=171.99 Aligned_cols=102 Identities=43% Similarity=0.750 Sum_probs=90.6
Q ss_pred cCccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh
Q 004082 101 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (775)
Q Consensus 101 ~LanVRVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaL 180 (775)
+++++|+++++.|||+|||+.+++++|++..++|++||+|.+|.|.+++.+. ....++|+|||+|.+.++|.+||+.|
T Consensus 6 ~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~--~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 6 SGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYA--GSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp SCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCC--SSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred CCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcC--ccCCCCeEEEEEECcHHHHHHHHHHh
Confidence 7899999999999999999999999985334899999999999998876542 11235689999999999999999999
Q ss_pred cCCccCCeEEEEEecCCCcccccc
Q 004082 181 HGFVLEGKSLKACFGTTKYCHAWL 204 (775)
Q Consensus 181 DGs~LdGR~LRASfGTTKYCssFL 204 (775)
||..|+||.|+|.||++|+|+.|-
T Consensus 84 ng~~~~gr~l~V~~a~~k~~~~~~ 107 (111)
T 2cpi_A 84 NNVVVDGRTLKASLGTTKYCSYSG 107 (111)
T ss_dssp TTEEETTEEEEEESCCCCSCSSTT
T ss_pred CCCEECCEEEEEEecccccccccC
Confidence 999999999999999999998763
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=144.16 Aligned_cols=81 Identities=21% Similarity=0.401 Sum_probs=74.2
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.|.+.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELR---SLFSSIGEVESAKLIRDKVAG-----HSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEeEeeecCCCC-----cccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 567889999999999999986 899999999999999987643 357899999999999999999999999999
Q ss_pred eEEEEEecC
Q 004082 188 KSLKACFGT 196 (775)
Q Consensus 188 R~LRASfGT 196 (775)
|.|+|.||.
T Consensus 89 r~l~V~~Ak 97 (99)
T 4fxv_A 89 KTIKVSYAR 97 (99)
T ss_dssp EECEEEECC
T ss_pred EEEEEEEee
Confidence 999999985
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=1.4e-16 Score=141.23 Aligned_cols=81 Identities=16% Similarity=0.350 Sum_probs=73.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+ ++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~lfV~nLp~~~te~~L~---~~F~~~G~v~~v~i~~d~~~-------~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEECCCCCCCCHHHHH---HHHhccCCEEEEEEeecCCC-------CCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3579999999999999886 99999999999999988643 3689999999999999999999999999999
Q ss_pred EEEEecCCCcc
Q 004082 190 LKACFGTTKYC 200 (775)
Q Consensus 190 LRASfGTTKYC 200 (775)
|+|.++..+..
T Consensus 75 i~V~~a~~~~~ 85 (115)
T 4f25_A 75 VFVGRFKSRKE 85 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCccc
Confidence 99999987643
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=2.3e-16 Score=129.73 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=72.8
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 004082 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (775)
Q Consensus 111 NLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~L 190 (775)
..|||+|||+.+++++|. ++|++||+|..|.|.++..++ .++|+|||+|.+.++|.+||+.|||..++|+.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLR---NAFKDFPSYLSGHVMWDMQTG-----SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHH---HHHTTSTTEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEcCCCC-----CccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 369999999999999986 899999999999999886542 357899999999999999999999999999999
Q ss_pred EEEecCCC
Q 004082 191 KACFGTTK 198 (775)
Q Consensus 191 RASfGTTK 198 (775)
+|.|+..|
T Consensus 74 ~v~~a~~~ 81 (83)
T 3md1_A 74 RINWAAKL 81 (83)
T ss_dssp EEEECCCC
T ss_pred EEEecCcC
Confidence 99999876
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-17 Score=141.01 Aligned_cols=80 Identities=16% Similarity=0.328 Sum_probs=72.2
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCc-ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc-CCccCCe
Q 004082 111 NLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH-GFVLEGK 188 (775)
Q Consensus 111 NLVYVvGLp~~iaeEDLLr~~EyFGQYG-KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD-Gs~LdGR 188 (775)
|.|||+|||+.+++++|. ++|++|| +|..|.|.+++.++ .++|+|||+|.+.++|.+||+.++ |..++||
T Consensus 2 ~~i~v~nLp~~~te~~l~---~~F~~~G~~v~~v~i~~d~~t~-----~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr 73 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIR---GQLQSHGVQAREVRLMRNKSSG-----QSRGFAFVEFSHLQDATRWMEANQHSLNILGQ 73 (91)
T ss_dssp CEEEEETCCSSCCHHHHH---HHHHHHTCCCSBCCSSSCSSSC-----CCSSEEEEECSSHHHHHHHHHTTTTEEEETTE
T ss_pred CEEEEeCCCCCCCHHHHH---HHHHHhCCEeEEEEEEecCCCC-----CcCceEEEEecCHHHHHHHHHhcCCCeEECCE
Confidence 789999999999999996 9999999 89999999887653 467899999999999999999885 5679999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..|
T Consensus 74 ~i~V~~a~~~ 83 (91)
T 2lxi_A 74 KVSMHYSDPK 83 (91)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=140.69 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=74.2
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
..+.|||+|||+.+++++|. ++|++||+|.+|.|.++..++ .++|+|||+|.+.++|.+||+.|||..++||
T Consensus 5 p~~~lfV~nL~~~~te~~L~---~~F~~~G~i~~v~i~~d~~tg-----~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLK---DMCRKYGEVEEVEILLHPRTR-----KHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCCCCHHHHH---HHHHhcCCeeEEEEEECCCCC-----ceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35789999999999998885 999999999999999987643 3688999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 77 ~i~V~~a~~~ 86 (110)
T 3s8s_A 77 IIHAQLDIKG 86 (110)
T ss_dssp ECEEEECSTT
T ss_pred EEEEEECCCC
Confidence 9999998654
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=131.31 Aligned_cols=81 Identities=16% Similarity=0.310 Sum_probs=72.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||+.|||..++|+.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIA---AAFAPFGRISDARVVKDMATG-----KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp CEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ceEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5679999999999999986 999999999999999886442 35789999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..|
T Consensus 78 l~v~~a~~k 86 (87)
T 3bs9_A 78 IRTNWATRK 86 (87)
T ss_dssp CEEEEEC--
T ss_pred EEEEecCCC
Confidence 999999876
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=2.8e-16 Score=129.80 Aligned_cols=80 Identities=15% Similarity=0.339 Sum_probs=72.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|.+|.|.++..++ ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHH---HHHGGGSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHhccCCEEEEEEEECCCCC-----ccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46789999999999999886 899999999999998875542 2478999999999999999999999999999
Q ss_pred EEEEEecC
Q 004082 189 SLKACFGT 196 (775)
Q Consensus 189 ~LRASfGT 196 (775)
.|+|.|+.
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999974
No 9
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=138.76 Aligned_cols=80 Identities=11% Similarity=0.265 Sum_probs=71.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcc--eeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCC----
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGK--VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF---- 183 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGK--I~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs---- 183 (775)
-|+|||+|||+.+++|+|. ++|++||+ |.+|.|.+|+.++ .++|+|||+|.+.++|.+||+.|||.
T Consensus 9 m~tlfV~nL~~~~tee~L~---~~F~~~G~i~v~~v~i~~d~~tg-----~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIM---TALSPYASLAVNNIRLIKDKQTQ-----QNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHSTTTCCCCGGGEECCCCSSSS-----SCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred cCEEEEeCCCCcCCHHHHH---HHHHhhCCccEEEEEEEecCCCC-----CCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 5899999999999999986 89999996 6789999987653 46889999999999999999999997
Q ss_pred ccCCeEEEEEecCC
Q 004082 184 VLEGKSLKACFGTT 197 (775)
Q Consensus 184 ~LdGR~LRASfGTT 197 (775)
.++||+|+|.||..
T Consensus 81 ~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 81 KIDGKTIGVDFAKS 94 (95)
T ss_dssp EETTEEEEEEECCC
T ss_pred eECCEEEEEEEccC
Confidence 49999999999864
No 10
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=130.78 Aligned_cols=83 Identities=22% Similarity=0.394 Sum_probs=75.0
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||+.|||..++|+.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLR---GIFEPFGKIDNIVLMKDSDTG-----RSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEECCSSSC-----CCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEeecCCCC-----ceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4689999999999999986 999999999999999886542 35789999999999999999999999999999
Q ss_pred EEEEecCCCcc
Q 004082 190 LKACFGTTKYC 200 (775)
Q Consensus 190 LRASfGTTKYC 200 (775)
|+|.|+..|--
T Consensus 77 l~V~~a~~~~~ 87 (95)
T 2dnz_A 77 MRVGHVTERLD 87 (95)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEcccccC
Confidence 99999988743
No 11
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=134.74 Aligned_cols=85 Identities=15% Similarity=0.333 Sum_probs=76.3
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
+......|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||..|||..+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIH---DKFAEYGEIKNIHLNLDRRTG-----YLKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTS-----SEEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHhccCCeEEEEEEecCCCC-----ceeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 44567889999999999999986 999999999999999886543 3578999999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+|+.|+|.|+..|
T Consensus 91 ~g~~l~V~~a~~~ 103 (106)
T 1p27_B 91 MGQPISVDWCFVR 103 (106)
T ss_dssp SSSBCEEEESEES
T ss_pred CCcEEEEEeecCC
Confidence 9999999999875
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=132.37 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=74.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
..+.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLE---KLFSAYGPLSELHYPIDSLTK-----KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCCCTTTC-----CCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----CcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46789999999999999986 999999999999999876432 3578999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 79 ~l~V~~a~~~ 88 (99)
T 1whw_A 79 MLHVLPSTIK 88 (99)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999999887
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=130.75 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=73.7
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..++|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLR---EVFSKYGPIADVSIVYDQQSR-----RSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHH---HHHHTTSCEEEEEEEECSSSS-----SEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHH---HHHHhcCCeeEEEEEEcCCCC-----CcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345779999999999999986 999999999999999886543 357899999999999999999999999999
Q ss_pred eEEEEEecCC
Q 004082 188 KSLKACFGTT 197 (775)
Q Consensus 188 R~LRASfGTT 197 (775)
|.|+|.|+++
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999875
No 14
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=129.35 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=74.0
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
++...|||+|||+.+++++|. ++|++||+|..|.|.++..+. ...+|+|||+|.+.++|.+||+.|||..++|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIM---EIFSTYGKIKMIDMPVERMHP----HLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCEETTEE----EEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEeCCCCC----CCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 346789999999999999986 899999999999998876532 1146799999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.++...
T Consensus 75 ~~l~v~~a~~~ 85 (88)
T 4a8x_A 75 QEITATAVLAP 85 (88)
T ss_dssp EECEEEEECCC
T ss_pred eEEEEEECCCC
Confidence 99999998764
No 15
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=5.3e-16 Score=132.03 Aligned_cols=81 Identities=17% Similarity=0.409 Sum_probs=73.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||+.|||..++||.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQIL---DLCSNVGPVINLKMMFDPQTG-----RSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCTTTC-----CBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3679999999999999986 999999999999999876542 35789999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..+
T Consensus 74 l~V~~a~~~ 82 (96)
T 2x1f_A 74 LKCGYSSNS 82 (96)
T ss_dssp CEEEECSCS
T ss_pred EEEEEcCCC
Confidence 999999887
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.9e-16 Score=129.58 Aligned_cols=83 Identities=25% Similarity=0.510 Sum_probs=74.0
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.......|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++++|||+|.+.++|.+||+.|||..+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLY---RIFSKYGKVVKVTIMKDKDTR-----KSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHH---HHTTTTSCEEEEEECCCSSSC-----CCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 34457889999999999999986 999999999999999876542 3578899999999999999999999999
Q ss_pred CCeEEEEEecC
Q 004082 186 EGKSLKACFGT 196 (775)
Q Consensus 186 dGR~LRASfGT 196 (775)
+||.|+|.|+.
T Consensus 84 ~g~~l~v~~ak 94 (94)
T 2e5h_A 84 FGRVIKASIAI 94 (94)
T ss_dssp TTEEEEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.9e-16 Score=132.58 Aligned_cols=84 Identities=18% Similarity=0.364 Sum_probs=75.5
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
......|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQ---ELFRPFGSISRIYLAKDKTTG-----QSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHH---TTSTTTCCEEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEeecCCCC-----ceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3446789999999999999986 999999999999999886542 35789999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
|+.|+|.|+..+
T Consensus 84 g~~l~v~~a~~~ 95 (103)
T 2cq0_A 84 HLILNVEWAKPS 95 (103)
T ss_dssp TEECEEEESSCC
T ss_pred CcEEEEEECCCC
Confidence 999999999876
No 18
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.6e-16 Score=134.46 Aligned_cols=81 Identities=19% Similarity=0.186 Sum_probs=68.6
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCc--ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYG--KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
|..|||+|||+.+++++|. ++|++|| +|..|.|.+++.++ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 1 r~~l~V~nL~~~~t~~~l~---~~F~~~G~~~v~~v~i~~~~~~g-----~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp ---CEEESCCTTCCHHHHH---HHHHTTTCCCCCCEEEEECTTTC-----CEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred CeEEEEeCCCCCCCHHHHH---HHHHHhCCCceEEEEEEecCCCC-----ccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3579999999999999986 8999999 99999999886543 357899999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.++..+
T Consensus 73 r~i~V~~~~~~ 83 (90)
T 3p5t_L 73 QNPVVTPSNKL 83 (90)
T ss_dssp CCCEECCC---
T ss_pred EEEEEEECCCC
Confidence 99999998765
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=130.54 Aligned_cols=84 Identities=20% Similarity=0.432 Sum_probs=75.5
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.-...+.|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+++|||+|.+.++|.+||+.|||..+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELE---EICKAHGTVKDLRLVTNRAG------KPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTS------CEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEEECCCC------CEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34557889999999999999986 99999999999999987632 3578999999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+|+.|+|.|+..+
T Consensus 84 ~g~~l~v~~a~~~ 96 (100)
T 2do4_A 84 KENIIKVAISNSG 96 (100)
T ss_dssp SSCEEEEEECCCC
T ss_pred CCEEEEEEECCCC
Confidence 9999999999876
No 20
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=1.1e-16 Score=138.54 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=73.0
Q ss_pred cCEEEEeCCCC------CCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 004082 110 RNLVYIVGLPL------NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183 (775)
Q Consensus 110 rNLVYVvGLp~------~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs 183 (775)
.++|||+|||. .+.+++|. ++|++||+|.+|.|.+++.++ .++|+|||+|.+.++|.+||+.|||.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~---~~F~~~G~i~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALT---SLFSKAGKVVNMEFPIDEATG-----KTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHH---HHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHH---HHHHhcCCEeEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHHhCCc
Confidence 57899999999 88888875 899999999999999987643 35789999999999999999999999
Q ss_pred ccCC-eEEEEEecCCC
Q 004082 184 VLEG-KSLKACFGTTK 198 (775)
Q Consensus 184 ~LdG-R~LRASfGTTK 198 (775)
.++| |.|+|.++..+
T Consensus 78 ~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 78 RLDLKHRLFLYTMKDV 93 (100)
T ss_dssp BSSSSCBCEEEESHHH
T ss_pred ccCCCeEEEEEECchh
Confidence 9999 99999998764
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=133.21 Aligned_cols=84 Identities=14% Similarity=0.309 Sum_probs=75.7
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..++|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHH---HHHTTTSCCCCEECCCCSSSC-----CCSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHhhccCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356789999999999999986 999999999999998876543 357899999999999999999999999999
Q ss_pred eEEEEEecCCCc
Q 004082 188 KSLKACFGTTKY 199 (775)
Q Consensus 188 R~LRASfGTTKY 199 (775)
+.|+|.|+..+-
T Consensus 82 ~~l~V~~a~~~~ 93 (102)
T 2cqb_A 82 RTIRVNLAKPMR 93 (102)
T ss_dssp EEEEEEECCCCC
T ss_pred cEEEEEeCCCCC
Confidence 999999998874
No 22
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=131.85 Aligned_cols=81 Identities=20% Similarity=0.337 Sum_probs=72.8
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeE--------EEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHH
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK--------VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 179 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~K--------IvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqa 179 (775)
.....|||+|||+.+++++|. ++|++||.|.. |.|.+++.++ ..+|+|||+|.+.++|.+||+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVA---DYFKQIGIIKTNKKTGQPMINLYTDRETG-----KLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHH---HHHTTTSCBCEETTTTEESEEEEECTTTC-----SEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHHhCCEeeccccccccEEEEecCCCC-----CeeeEEEEEECCHHHHHHHHHH
Confidence 346789999999999999986 99999999999 9999886543 3578999999999999999999
Q ss_pred hcCCccCCeEEEEEecC
Q 004082 180 VHGFVLEGKSLKACFGT 196 (775)
Q Consensus 180 LDGs~LdGR~LRASfGT 196 (775)
|||..++||.|+|.||+
T Consensus 83 l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 83 FDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HTTCBSSSSBCEEEECC
T ss_pred hCCCEeCCcEEEEEecC
Confidence 99999999999999975
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=8.8e-16 Score=134.31 Aligned_cols=83 Identities=18% Similarity=0.329 Sum_probs=75.0
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIK---AAFAPFGRISDARVVKDMATG-----KSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346789999999999999986 899999999999999886432 357899999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 85 ~~l~V~~a~~~ 95 (115)
T 2dgo_A 85 RQIRTNWATRK 95 (115)
T ss_dssp EECEEEESSCC
T ss_pred EEEEEEEccCC
Confidence 99999999877
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=130.30 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=74.0
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
..+.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++++|||+|.+.++|.+||+ |||..++|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELR---EYFKKFGVVTEVVMIYDAEKQ-----RPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHH---HHHSSSSCEEEEEECCCTTTC-----SCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 45789999999999999986 999999999999999876542 357899999999999999999 999999999
Q ss_pred EEEEEecCCCc
Q 004082 189 SLKACFGTTKY 199 (775)
Q Consensus 189 ~LRASfGTTKY 199 (775)
.|+|.|+..+-
T Consensus 80 ~l~V~~a~~~~ 90 (99)
T 2dgs_A 80 KVEVKRAEPRD 90 (99)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCc
Confidence 99999998873
No 25
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=130.18 Aligned_cols=83 Identities=25% Similarity=0.486 Sum_probs=74.7
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.++..+ .+++|||+|.+.++|.+||+.|||..++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLR---QMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHH---HHGGGTSCEEEEEEECCTTT-------TCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCC-------CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346789999999999999986 99999999999999987532 46899999999999999999999999999
Q ss_pred eEEEEEecCCCcc
Q 004082 188 KSLKACFGTTKYC 200 (775)
Q Consensus 188 R~LRASfGTTKYC 200 (775)
+.|+|.|+..+--
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 83 RKIEVNNATARVM 95 (103)
T ss_dssp EECEEEECCSSCC
T ss_pred EEEEEEEcccCCC
Confidence 9999999988743
No 26
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.6e-16 Score=132.42 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=76.0
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLW---ELFLQAGPVVNTHMPKDRVTG-----QHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCBCSSSC-----SBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----cCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 45789999999999999986 999999999999999876442 3578899999999999999999999999999
Q ss_pred EEEEEecCCCccc
Q 004082 189 SLKACFGTTKYCH 201 (775)
Q Consensus 189 ~LRASfGTTKYCs 201 (775)
.|+|.|+..+-..
T Consensus 86 ~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 86 PIRVNKASAHNKN 98 (105)
T ss_dssp BCEEEETTTTSCC
T ss_pred EEEEEECCCCCcC
Confidence 9999999987543
No 27
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=131.25 Aligned_cols=80 Identities=20% Similarity=0.352 Sum_probs=73.2
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+ .+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLIL---QLFSQIGPCKSCKMITEHTS-------NDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHHHHSCEEEEEEECCCCS-------SCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCccCCHHHHH---HHHHhcCCEeEEEEEecCCC-------CCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 46789999999999999986 99999999999999987542 367999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2cqi_A 84 EVKVNWATTP 93 (103)
T ss_dssp EEEEEECCCT
T ss_pred eEEEEECCCC
Confidence 9999999876
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-16 Score=130.89 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=73.5
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEE-EEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV-SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KI-vI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
...|||+|||+.+++++|. ++|++||+|..| .|.+++.++ ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLY---DTFSAFGVILQTPKIMRDPDTG-----NSKGYAFINFASFDASDAAIEAMNGQYLCNR 76 (96)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHHHTTSCBSSCCEECCCTTTC-----SCCSEEEEEBSSHHHHHHHHHTTTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEEcCCCC-----CcCeEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 5789999999999999986 899999999999 898875442 3578999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 77 ~l~v~~a~~~ 86 (96)
T 1x5t_A 77 PITVSYAFKK 86 (96)
T ss_dssp ECEEEESCCC
T ss_pred EEEEEEeccc
Confidence 9999999876
No 29
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=129.02 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=72.6
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.++..+ .++++|||+|.+.++|.+||+.|||..++||
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILY---ELFLQAGPLTKVTICKDREG------KPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTS------CEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCC------CCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 35789999999999999986 99999999999999987643 3578999999999999999999999999999
Q ss_pred EEEEEecCC
Q 004082 189 SLKACFGTT 197 (775)
Q Consensus 189 ~LRASfGTT 197 (775)
.|+|.|++.
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 999999864
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.5e-16 Score=131.81 Aligned_cols=83 Identities=13% Similarity=0.360 Sum_probs=75.0
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||+.|||..++|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLE---QVFSKYGQISEVVVVKDRETQ-----RSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHHHHSCCCEEEECCCSSSC-----SCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46789999999999999986 999999999999999876542 3578999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 004082 189 SLKACFGTTKY 199 (775)
Q Consensus 189 ~LRASfGTTKY 199 (775)
.|+|.|+..+.
T Consensus 83 ~l~v~~a~~~~ 93 (102)
T 1x5s_A 83 QIRVDQAGKSS 93 (102)
T ss_dssp CCEEEEEECCC
T ss_pred EEEEEECCCCC
Confidence 99999998763
No 31
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1e-15 Score=132.99 Aligned_cols=85 Identities=12% Similarity=0.317 Sum_probs=75.8
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
+......|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||..|||..+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQ---EKFCDYGEIKNIHLNLDRRTG-----FSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEECCBCTTTS-----SBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44567889999999999999986 899999999999998876543 3578999999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+|+.|+|.|+..+
T Consensus 94 ~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 94 MGQTIQVDWCFVK 106 (110)
T ss_dssp TTEECEEEESEES
T ss_pred CCcEEEEEEcccC
Confidence 9999999999765
No 32
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=132.06 Aligned_cols=85 Identities=22% Similarity=0.409 Sum_probs=76.1
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc-----
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH----- 181 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD----- 181 (775)
......|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++++|||+|.+.++|.+||+.||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 83 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALG---EVLQQFGDLKYVRVVLHPDTE-----HSKGCAFAQFMTQEAAQKCLAAASLEAEG 83 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCSSSC-----CBCSEEEEEESSHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CCccEEEEEECCHHHHHHHHHHhcccccc
Confidence 3456789999999999999986 999999999999999886543 357899999999999999999999
Q ss_pred -CCccCCeEEEEEecCCCc
Q 004082 182 -GFVLEGKSLKACFGTTKY 199 (775)
Q Consensus 182 -Gs~LdGR~LRASfGTTKY 199 (775)
|..++|+.|+|.|+..+-
T Consensus 84 ~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 84 GGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp CCEESSSCEEEEECCCCCC
T ss_pred CCcEEcCEEEEEEECCCCc
Confidence 999999999999998873
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=131.09 Aligned_cols=83 Identities=12% Similarity=0.337 Sum_probs=74.4
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeec-CCccccccCCCceEEEEEeCCHHHHHHHHHHh-cCCcc
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRT-AAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV-HGFVL 185 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd-~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaL-DGs~L 185 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.++ +.++ ..+++|||+|.+.++|.+||..| ||..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIR---ELFSTFGELKTVRLPKKMTGTG-----AHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCCCCSSSC-----SSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCEEEEeCCCCcCCHHHHH---HHHHccCCeEEEEEecCCCCCC-----CcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 446789999999999999986 99999999999999887 4332 35789999999999999999999 99999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+|+.|+|.|+..+
T Consensus 85 ~g~~l~v~~a~~~ 97 (107)
T 2cph_A 85 YGRRLVLEWADSE 97 (107)
T ss_dssp SSCBCEEEECCCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999999876
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=1.9e-15 Score=129.93 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=74.1
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
-....|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+++|||+|.+.++|.+||+.|||..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVL---RLFQPFGVIDECTVLRGPDG------SSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECSSS------CEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC------CcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 346789999999999999986 99999999999999988633 357899999999999999999999999998
Q ss_pred ---eEEEEEecCCC
Q 004082 188 ---KSLKACFGTTK 198 (775)
Q Consensus 188 ---R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 84 g~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 84 GASSSLVVKFADTD 97 (105)
T ss_dssp TCSSCCEEEESCSS
T ss_pred CCCccEEEEECccC
Confidence 99999999876
No 35
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=130.20 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=73.8
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.+...|||+|||+.+++++|. ++|++||+|..|.|.++ .+ ..+++|||+|.+.++|.+||+.|||..++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~-~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLR---KAFSPFGTITSAKVMME-GG------RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHH---HTTTTTSCEEEEEEEEC-SS------SEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcC-CC------CcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 456789999999999999986 99999999999999987 32 247899999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 83 ~~l~V~~a~~~ 93 (103)
T 2d9p_A 83 KPLYVALAQRK 93 (103)
T ss_dssp SBCEEEECSSC
T ss_pred cEEEEEEeccc
Confidence 99999999886
No 36
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=1.1e-15 Score=133.93 Aligned_cols=83 Identities=28% Similarity=0.457 Sum_probs=74.9
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.|||..++|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLL---QMFMPFGNVVSAKVFIDKQTN-----LSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHH---HHHGGGSCCSEEEEEECSSSC-----SEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCC-----CcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345789999999999999986 999999999999999886542 357899999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 95 ~~l~V~~a~~~ 105 (115)
T 2cpz_A 95 KRLKVQLKRSK 105 (115)
T ss_dssp EECEEECCCCS
T ss_pred EEEEEEEcCCC
Confidence 99999999876
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=8.6e-16 Score=131.98 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=75.3
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.-....|||+|||+.+++++|. ++|++||+|..|.|.++..++ ..+++|||+|.+.++|.+||+.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLR---RVFEKYGRVGDVYIPREPHTK-----APRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEECCBCSSSC-----SBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCCeEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----CCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3446789999999999999986 999999999999999876543 35789999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
|+.|+|.|+..+
T Consensus 82 g~~l~V~~a~~~ 93 (103)
T 2dnm_A 82 GRELRVQVARYG 93 (103)
T ss_dssp TBCCEEEECSSC
T ss_pred CcEEEEEECCcC
Confidence 999999999875
No 38
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=1.3e-15 Score=126.86 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=73.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++++|||+|.+.++|.+|| .|||..++|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELE---AHFHGCGSVNRVTILCDKFSG-----HPKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHH---HHHGGGCCEEEEEEEESCSSS-----SCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 35789999999999999986 999999999999999876442 35789999999999999999 9999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.++.++
T Consensus 76 ~l~V~~a~~~ 85 (89)
T 3ucg_A 76 QIKVIPKRTN 85 (89)
T ss_dssp ECEEEETTTT
T ss_pred EEEEEEccCC
Confidence 9999999875
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=129.80 Aligned_cols=85 Identities=16% Similarity=0.319 Sum_probs=73.4
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
..+.|||+|||+.+++++|. ++|++||+|..|.|.++.... .+...+++|||+|.+.++|.+||+.|||..++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~--gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLK---GVFSKVGAIKSCTISKKKNKA--GVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEEEECTT--CCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC--CCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 35789999999999999986 999999999999998876410 0012468999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 79 ~l~V~~a~~~ 88 (98)
T 2cpf_A 79 KLEVRISERA 88 (98)
T ss_dssp ECEEECSSCS
T ss_pred EEEEEEccCC
Confidence 9999999876
No 40
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=133.99 Aligned_cols=81 Identities=27% Similarity=0.521 Sum_probs=73.5
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+ .+|+|||+|.+.++|.+||+.|||..++|+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~-------~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLR---QMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHGGGTCCCSCEEECCBTTB-------CTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCcCCHHHHH---HHHHhcCCEEEEEEEECCCC-------CceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 46789999999999999986 89999999999999887532 468999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 004082 189 SLKACFGTTKY 199 (775)
Q Consensus 189 ~LRASfGTTKY 199 (775)
.|+|.|+..|.
T Consensus 98 ~l~V~~a~~~~ 108 (109)
T 2err_A 98 KIEVNNATARV 108 (109)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCc
Confidence 99999998873
No 41
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=131.10 Aligned_cols=84 Identities=15% Similarity=0.307 Sum_probs=75.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLK---DIFSEVGPVVSFRLVYDRETG-----KPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHH---HHHHTTSCCSEEEEEEETTTT-----EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred ccEEEEeCCCCcCCHHHHH---HHHHhcCCeeEEEEEeCCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4679999999999999986 999999999999999886442 25789999999999999999999999999999
Q ss_pred EEEEecCCCccc
Q 004082 190 LKACFGTTKYCH 201 (775)
Q Consensus 190 LRASfGTTKYCs 201 (775)
|+|.|+..+.-.
T Consensus 80 l~v~~a~~~~~~ 91 (104)
T 1p1t_A 80 LRVDNAASEKNK 91 (104)
T ss_dssp BEEEETTCTTHH
T ss_pred EEEEeCCCccch
Confidence 999999887543
No 42
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=130.54 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=71.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHH-HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~-~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
....|||+|||+.+++++|.+- +++|++||+|.+|.|.+++.+ +++|||+|.+.++|.+||+.|||..++|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--------rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--------QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--------TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--------CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568999999999999887311 389999999999999987542 4689999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.|+..+
T Consensus 80 r~l~V~~a~~~ 90 (96)
T 2dgx_A 80 KKILVSLATGA 90 (96)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEEcCCC
Confidence 99999999765
No 43
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=132.35 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=75.7
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCccee--------EEEEeecCCccccccCCCceEEEEEeCCHHHHHHHH
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL--------KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~--------KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAI 177 (775)
.......|||+|||+.+++++|. ++|++||.|. +|.|.+++.++ ..+++|||+|.+.++|.+||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai 82 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLA---DFFKQCGVVKMNKRTGQPMIHIYLDKETG-----KPKGDATVSYEDPPTAKAAV 82 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHH---HHHTTTSCBCBCSSSCCBSEECCBCTTTC-----SBCSEEEEEBSSHHHHHHHH
T ss_pred cCCCCCEEEEcCCCCCCCHHHHH---HHHHhcCCEeEccccCccCEEEEEeCCCC-----CeeeEEEEEECCHHHHHHHH
Confidence 44567899999999999999986 9999999999 69998875542 35789999999999999999
Q ss_pred HHhcCCccCCeEEEEEecCCC
Q 004082 178 QSVHGFVLEGKSLKACFGTTK 198 (775)
Q Consensus 178 qaLDGs~LdGR~LRASfGTTK 198 (775)
+.|||..|+|+.|+|.|+..+
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 83 EWFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHHTTCEETTEECEEECSSCC
T ss_pred HHcCCCccCCCEEEEEECCCC
Confidence 999999999999999999886
No 44
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.2e-15 Score=129.93 Aligned_cols=81 Identities=16% Similarity=0.414 Sum_probs=72.9
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
-....|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+++|||+|.+.++|.+||+.|||..++|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVHYDRSG------RSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTS------CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC------CcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 346789999999999999986 99999999999999988732 357899999999999999999999999999
Q ss_pred eEEEEEecCC
Q 004082 188 KSLKACFGTT 197 (775)
Q Consensus 188 R~LRASfGTT 197 (775)
+.|+|.|++.
T Consensus 98 ~~l~V~~a~s 107 (107)
T 3ulh_A 98 RPMNIQLVTS 107 (107)
T ss_dssp EECEEEEECC
T ss_pred cEEEEEEeCC
Confidence 9999999863
No 45
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=133.32 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=73.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 26 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLR---GIFEPFGRIESIQLMMDSETG-----RSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CEEEEEECCCSSCCHHHHH---HHHTTTSCEEEEEEEEETTTT-----EEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4679999999999999986 899999999999999886543 35789999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..|
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999999876
No 46
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=139.76 Aligned_cols=84 Identities=19% Similarity=0.363 Sum_probs=72.2
Q ss_pred cccCEEEEeCCCCCCChHHHHHH-HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~-~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
-..+.|||+|||+.+++++|.+. +++|++||+|.+|.|.++. ..+|+|||+|.+.++|.+||..|||..++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~--------~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD--------DNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC--------SSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCC--------CcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34678999999999998876321 5899999999999886531 24789999999999999999999999999
Q ss_pred CeEEEEEecCCCc
Q 004082 187 GKSLKACFGTTKY 199 (775)
Q Consensus 187 GR~LRASfGTTKY 199 (775)
||+|+|.|+..+-
T Consensus 99 gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 99 GNPLVITFSETPQ 111 (127)
T ss_dssp TSCCEEEECCCCC
T ss_pred CCEEEEEEccCcc
Confidence 9999999999873
No 47
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=9.5e-16 Score=129.34 Aligned_cols=80 Identities=10% Similarity=0.228 Sum_probs=70.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..+.+.+++.++ .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEIL---DFFYGYQVIPGSVCLKYNEKG-----MPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHH---HHTTTSCBCTTCCEEEECTTS-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCccceEEEEeCCCC-----CEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 4689999999999999986 899999999988888765432 35789999999999999999999999999999
Q ss_pred EEEEecCC
Q 004082 190 LKACFGTT 197 (775)
Q Consensus 190 LRASfGTT 197 (775)
|+|.|++.
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99999763
No 48
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.6e-15 Score=133.16 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=71.9
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..++||
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLA---STFLPFGNVISAKVFIDKQTS-----LSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHH---HHTTTSCEEEEEEECCCSSSS-----CCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----CcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45789999999999999986 999999999999999876542 3578999999999999999999999999999
Q ss_pred EEEEEecC
Q 004082 189 SLKACFGT 196 (775)
Q Consensus 189 ~LRASfGT 196 (775)
.|+|.|+.
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999973
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=1.6e-15 Score=130.53 Aligned_cols=83 Identities=17% Similarity=0.334 Sum_probs=74.5
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc--
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL-- 185 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L-- 185 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLK---PLFEEFGKIYELTVLKDRFTG-----MHKGCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHH---HHHHHHSCCCEEECCCCSSSC-----SCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 345789999999999999986 899999999999999886543 3578999999999999999999999998
Q ss_pred -CCeEEEEEecCCC
Q 004082 186 -EGKSLKACFGTTK 198 (775)
Q Consensus 186 -dGR~LRASfGTTK 198 (775)
+|+.|+|.|+..+
T Consensus 83 ~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 83 GMNRPIQVKPADSE 96 (106)
T ss_dssp TCSSCCEEEECCCC
T ss_pred CCCceEEEEECCcc
Confidence 8999999999886
No 50
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-15 Score=127.08 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=71.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLV---KLCQPYGKIVSTKAILDKTTN-----KCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCEEEEESCCTTCCHHHHH---TTSTTTSCEEEEEEECCSSSC-----SCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 4689999999999999986 999999999999999876543 35789999999999999999999999999999
Q ss_pred EEEEecC
Q 004082 190 LKACFGT 196 (775)
Q Consensus 190 LRASfGT 196 (775)
||+++..
T Consensus 77 ~~~~~~~ 83 (85)
T 1x4e_A 77 AKQSGPS 83 (85)
T ss_dssp CCSSCCC
T ss_pred EeecCCC
Confidence 9988765
No 51
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=129.41 Aligned_cols=81 Identities=11% Similarity=0.279 Sum_probs=71.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||.|..+.+.+++.++ .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~v~~~~~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEIL---DFFYGYQVIPGSVCLKYNEKG-----MPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp SEEEEEESCCTTCCHHHHH---HHTTTSCCCTTTCEEEECSSS-----CEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHcCCccceEEEEECCCC-----CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4679999999999999986 899999999988777665432 35789999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|++.+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998754
No 52
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=3.5e-15 Score=132.66 Aligned_cols=86 Identities=15% Similarity=0.373 Sum_probs=76.7
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
....+.|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+|+|||+|.+.++|.+||+.|||..++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~g------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVDYDRSG------RSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHH---HHHHTTSCCSEEEEECCSSS------SCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEECCCC------CEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456789999999999999986 99999999999999987632 35789999999999999999999999999
Q ss_pred CeEEEEEecCCCccc
Q 004082 187 GKSLKACFGTTKYCH 201 (775)
Q Consensus 187 GR~LRASfGTTKYCs 201 (775)
|+.|+|.|+..+.+.
T Consensus 103 g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 103 GRPMDIQLVASQIDL 117 (124)
T ss_dssp SCEEEEEEECCTTCC
T ss_pred CcEEEEEEeCCCCCC
Confidence 999999999987554
No 53
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=129.27 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=74.5
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCccee-EEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL-KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~-KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.....|||+|||+.+++++|. ++|++||+|. .|.|.+++.++ .++++|||+|.+.++|.+||+.|||..++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFIS---RAFATMGETVMSVKIIRNRLTG-----IPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHH---HHHHHTTCCCCEEEEEECSSSC-----CEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCccEEEEeCCCCCCCHHHHH---HHHHHhCCcceEEEEeecCCCC-----CcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 346789999999999999986 8999999999 99999886543 35789999999999999999999999999
Q ss_pred CeE----EEEEecCCC
Q 004082 187 GKS----LKACFGTTK 198 (775)
Q Consensus 187 GR~----LRASfGTTK 198 (775)
|+. |+|.|++..
T Consensus 79 g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 79 GATPAKRFKLNYATYS 94 (99)
T ss_dssp SCSSCEECCEEETTCC
T ss_pred CCCcceeEEEeecCCC
Confidence 999 999999764
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=2e-15 Score=134.02 Aligned_cols=85 Identities=15% Similarity=0.333 Sum_probs=75.6
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
+......|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIH---DKFAEYGEIKNIHLNLDRRTG-----YLKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCTTTS-----SBCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 34556789999999999999986 999999999999999876442 3478899999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+|+.|+|.|+..+
T Consensus 90 ~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 90 MGQPISVDWCFVR 102 (126)
T ss_dssp SSSBCEEEESEES
T ss_pred CCeEEEEEEecCC
Confidence 9999999999876
No 55
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=135.58 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=75.5
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++ ..+|+|||+|.+.++|.+||+.|||..++|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLR---QLFERYGPIESVKIVCDRETR-----QSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHH---HHHHHHSCEEEEEEEEETTTT-----EEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345789999999999999986 999999999999999886543 257899999999999999999999999999
Q ss_pred eEEEEEecCCCc
Q 004082 188 KSLKACFGTTKY 199 (775)
Q Consensus 188 R~LRASfGTTKY 199 (775)
+.|+|.|+..+-
T Consensus 112 ~~l~v~~a~~~~ 123 (139)
T 1u6f_A 112 KRLKVALAASGH 123 (139)
T ss_dssp CEEEEEESSCCC
T ss_pred eEEEEEECCCCC
Confidence 999999998873
No 56
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=5.5e-16 Score=129.92 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=69.9
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 004082 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (775)
Q Consensus 111 NLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~L 190 (775)
..|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.+ |.+||..|||..++||.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVK---ELFSQFGKVFNVKLIYDRETK-----KPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHT---TTHHHHTCCSEEEECCCSSSC-----CCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHH---HHHHhcCCEEEEEEEEcCCCC-----CcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 469999999999999986 999999999999999886543 35789999999999 999999999999999999
Q ss_pred EEEecCCCccccc
Q 004082 191 KACFGTTKYCHAW 203 (775)
Q Consensus 191 RASfGTTKYCssF 203 (775)
+|.|++.+.....
T Consensus 73 ~V~~a~~~~~~~~ 85 (90)
T 2ki2_A 73 RVTEANPKKSLEH 85 (90)
T ss_dssp SEEEC--------
T ss_pred EEEEcCCCCCCCC
Confidence 9999998866543
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=2.4e-15 Score=136.90 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=75.1
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||+.|||..|+|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLR---EVFSKYGPIADVSIVYDQQSR-----RSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHH---HHHTTTSCEEEEEEECCSSSS-----CCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345789999999999999986 999999999999999886543 357899999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..|
T Consensus 116 ~~l~V~~a~~~ 126 (129)
T 2kxn_B 116 RRIRVDFSITK 126 (129)
T ss_dssp SCCEESCCSSS
T ss_pred EEEEEEEecCC
Confidence 99999999876
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=132.95 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=73.5
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|.+|.|.++..+ ..+|+|||+|.+.++|.+||+.|||..++|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLK---AVFGKHGPISEVLLIKDRTS------KSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHH---HHHHTSSCCSEEEEECSTTT------TCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCC------CcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35789999999999999986 89999999999999987632 3578999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 77 ~l~V~~a~~~ 86 (116)
T 2fy1_A 77 AIKVEQAKKP 86 (116)
T ss_dssp BCEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999865
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=3.1e-15 Score=125.47 Aligned_cols=79 Identities=16% Similarity=0.321 Sum_probs=71.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.++.. ..+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~~~i~~~~g-------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLK---DKFNECGHVLYADIKMENG-------KSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp CCEEEECSCCTTCCHHHHH---HHHHTTSCEEEEEEEESSS-------CEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEccCC-------CcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 5789999999999999986 9999999999999987521 24789999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..+
T Consensus 78 l~v~~a~~~ 86 (92)
T 2dgv_A 78 IDVRIDRNA 86 (92)
T ss_dssp CCCEECSCC
T ss_pred EEEEEcCCC
Confidence 999999876
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=128.86 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=72.5
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+ ..+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLK---EVFSMAGVVVRADILEDKDG------KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CSCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTC------SEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC------CeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 5789999999999999986 99999999999999987643 35789999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+...
T Consensus 86 l~v~~a~~~ 94 (114)
T 2do0_A 86 MHVKMDERA 94 (114)
T ss_dssp CEEEECSCC
T ss_pred EEEEEcccC
Confidence 999998653
No 61
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=133.74 Aligned_cols=79 Identities=15% Similarity=0.343 Sum_probs=71.2
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.++ ..+++|||+|.+.++|.+||+.|||..++||
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHH---HHHGGGSCEEEEECCCCTTTC-----CCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCcEEEEEeCCCCCCHHHHH---HHHHhcCCEEEEEEeecCCCC-----CcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 46789999999999999986 899999999999999876543 3578999999999999999999999999999
Q ss_pred EEEEEec
Q 004082 189 SLKACFG 195 (775)
Q Consensus 189 ~LRASfG 195 (775)
.|+|.||
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999986
No 62
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=2.4e-15 Score=133.20 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
..-|||+||++++++++|+ ++|.|||+|+++.+.. ++|+|||+|.+++||.+||++|||..++||+
T Consensus 7 ~~wL~VgNL~~~~te~~L~---~lF~q~G~V~~~~l~~-----------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLR---TLCMQHGPLVSFHPYL-----------NQGIALCKYTTREEANKAQMALNNCVLANTT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHH---HHHHHHSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cceEEEeCCCccCCHHHHH---HHHHhhCCEEEEEEcC-----------CCcEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 3569999999999988875 9999999999999864 3689999999999999999999999999999
Q ss_pred EEEEecC
Q 004082 190 LKACFGT 196 (775)
Q Consensus 190 LRASfGT 196 (775)
|+|.+|+
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999995
No 63
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=142.07 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=75.3
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCc--ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYG--KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
....|||+|||+.+++++|. ++|++|| +|..|.|.+++.++ ..+|+|||+|.+.++|.+||..|||..|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLI---QVIRSIGVYDVVELKFAENRANG-----QSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHH---HHHHHTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHHCCccEEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35789999999999999986 9999999 99999999887543 35789999999999999999999999999
Q ss_pred CeEEEEEecCCCccc
Q 004082 187 GKSLKACFGTTKYCH 201 (775)
Q Consensus 187 GR~LRASfGTTKYCs 201 (775)
||.|+|.|++.+...
T Consensus 126 Gr~l~V~~a~~~~~~ 140 (156)
T 3n9u_C 126 GEKVDVRPATRQNLS 140 (156)
T ss_dssp TEECEEEECCHHHHH
T ss_pred CeEeEEEEcCCCcch
Confidence 999999999876443
No 64
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5e-15 Score=128.70 Aligned_cols=81 Identities=15% Similarity=0.354 Sum_probs=72.5
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
-.....|||+|||+.+++++|. ++|++||+|..|.|.++. ..+++|||+|.+.++|.+||+.|||..++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIE---DVFYKYGAIRDIDLKNRR--------GGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEECCSS--------SSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECC--------CCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456889999999999999986 999999999999996543 24678999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
|+.|+|.|+..+
T Consensus 88 g~~l~V~~a~~~ 99 (109)
T 1x4a_A 88 GYRLRVEFPRSG 99 (109)
T ss_dssp TEECEEECCCCC
T ss_pred CeEEEEEEcccC
Confidence 999999999876
No 65
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=131.83 Aligned_cols=81 Identities=23% Similarity=0.405 Sum_probs=72.5
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.+....|||+|||+.+++++|. ++|++||+|..|.|.+++.+ .++|+|||+|.+.++|.+||. +||..++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~---~~F~~~G~v~~v~i~~d~~g------~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~ 77 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIK---EWLEDKGQVLNIQMRRTLHK------AFKGSIFVVFDSIESAKKFVE-TPGQKYK 77 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHH---HHHHTSSCEEEEEEECCCTT------SCCCEEEEEESSHHHHHHHHT-SSCCCCT
T ss_pred cCCCCEEEEECCCCCCCHHHHH---HHHhhcCCEEEEEEEECCCC------CCccEEEEEECCHHHHHHHHH-cCCCEEC
Confidence 4556789999999999999986 99999999999999988653 357899999999999999999 9999999
Q ss_pred CeEEEEEecCC
Q 004082 187 GKSLKACFGTT 197 (775)
Q Consensus 187 GR~LRASfGTT 197 (775)
||.|+|.++..
T Consensus 78 gr~l~V~~~~~ 88 (103)
T 1s79_A 78 ETDLLILFKDD 88 (103)
T ss_dssp TTTCEEEEHHH
T ss_pred CEEEEEEEchH
Confidence 99999998654
No 66
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=131.75 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=73.5
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+|| .|||..|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLE---DFFSAVGKVRDVRIISDRNSR-----RSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCSCCSS-----SCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhCCCEeEEEEEecCCCC-----ccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 346889999999999999986 999999999999999877542 35789999999999999999 999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 94 ~~l~V~~a~~~ 104 (114)
T 2cq4_A 94 VPIIVQASQAE 104 (114)
T ss_dssp EEEEEEEHHHH
T ss_pred eEEEEEecCCC
Confidence 99999998764
No 67
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=133.57 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=68.8
Q ss_pred cccCEEEEeCCCC-CCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc--
Q 004082 108 IQRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-- 184 (775)
Q Consensus 108 IQrNLVYVvGLp~-~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~-- 184 (775)
-....|||+|||+ .++++||. ++|++||+|.+|.|.++ +++|||+|++.++|.+||+.|||..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~---~lF~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 78 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLL---QLVEPFGVISNHLILNK-----------INEAFIEMATTEDAQAAVDYYTTTPAL 78 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHH---TTTGGGSCEEEEEECSS-----------SSCEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCEEEEeCCCCCcCCHHHHH---HHHHhcCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHHcCCCce
Confidence 3567899999999 99998886 99999999999999864 3579999999999999999999754
Q ss_pred cCCeEEEEEecCCC
Q 004082 185 LEGKSLKACFGTTK 198 (775)
Q Consensus 185 LdGR~LRASfGTTK 198 (775)
|+||+|+|.|+..+
T Consensus 79 ~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 79 VFGKPVRVHLSQKY 92 (102)
T ss_dssp ETTEECEEEEECCC
T ss_pred ECCcEEEEEECCCC
Confidence 99999999999875
No 68
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.8e-15 Score=122.87 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=67.8
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 004082 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (775)
Q Consensus 112 LVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LR 191 (775)
.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+ +||..++||.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVK---HYFEQFGKVDDAMLMFDKTTN-----RHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHH---HHHHTTSCCSEECCCBCSSST-----TSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 48999999999999986 899999999999998876542 357899999999999999998 999999999999
Q ss_pred EEec
Q 004082 192 ACFG 195 (775)
Q Consensus 192 ASfG 195 (775)
|.+|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 69
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=127.43 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=72.7
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++|| |..|.|.++..+. ...+++|||+|.+.++|.+|| .|||..++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G-i~~v~i~~~~~~~----g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIK---EFFRGLN-ISAVRLPREPSNP----ERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHH---HHTTTSC-EEEEECCBCSSCT----TSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCEEEEeCCCCcCCHHHHH---HHHHHCC-ceEEEEecCCCCC----CCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 345789999999999999986 8999999 9999999876531 134678999999999999999 999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 84 ~~l~V~~a~~~ 94 (104)
T 1wi8_A 84 KRIRVDVADQA 94 (104)
T ss_dssp EECEEEECCCC
T ss_pred cEEEEEEccCC
Confidence 99999999886
No 70
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=125.46 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=71.7
Q ss_pred ccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 105 VRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 105 VRVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
-+....+.|||+|||+.+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||+.|||..
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~ 77 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALA---REFDRFGSIRTIDHVKG-----------DSFAYIQYESLDAAQAACAKMRGFP 77 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHH---HHHHTTSCEEEEEECSS-----------SCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeCC-----------CCEEEEEECCHHHHHHHHHHHCCCE
Confidence 344556889999999999999986 89999999999988743 4589999999999999999999999
Q ss_pred cC--CeEEEEEecCCC
Q 004082 185 LE--GKSLKACFGTTK 198 (775)
Q Consensus 185 Ld--GR~LRASfGTTK 198 (775)
++ |+.|+|.|+..+
T Consensus 78 ~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 78 LGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CSSSSCBCEEEECCCC
T ss_pred eCCCCcEEEEEECCCC
Confidence 99 999999999876
No 71
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.1e-15 Score=129.36 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=73.0
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcc-eeEEEEe-ecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc--CC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGK-VLKVSMS-RTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH--GF 183 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGK-I~KIvI~-rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD--Gs 183 (775)
...+.|||+|||+.+++++|. ++|++||. |..|.|. +++.++ .++|+|||+|.+.++|.+||+.|| |.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~~v~~v~i~~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~~g~~ 77 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEIL---EEIAKVTEGVLDVIVYASAADKM-----KNRGFAFVEYESHRAAAMARRKLMPGRI 77 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHH---HHHHHHSTTEEEEECCSSSCTTT-----TTCCEEEEEESSHHHHHHHHTTTTTCCS
T ss_pred cCCCEEEEeCCCCcCCHHHHH---HHHHHhcCCceEEEEEccCCCCC-----CcCcEEEEEecCHHHHHHHHHHhhCCCc
Confidence 456789999999999999986 99999999 9999997 555432 357899999999999999999996 59
Q ss_pred ccCCeEEEEEecCCC
Q 004082 184 VLEGKSLKACFGTTK 198 (775)
Q Consensus 184 ~LdGR~LRASfGTTK 198 (775)
.++||.|+|.|+..+
T Consensus 78 ~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 78 QLWGHQIAVDWAEPE 92 (109)
T ss_dssp CBTTBCCEEEESCSS
T ss_pred eecCCeEEEEEcCCC
Confidence 999999999999876
No 72
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=6.5e-15 Score=126.78 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=72.4
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++|| |..|.|.+++.++ ..+|+|||+|.+.++|.+|| .|||..++||
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g-i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDID---AIFKDLS-IRSVRLVRDKDTD-----KFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHH---HHTTTSC-EEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCeEEEEeCCCCCCCHHHHH---HHHHhCC-ceEEEEeecCCCC-----ccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 46789999999999999986 9999998 9999999887543 35789999999999999999 8999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2dng_A 84 SLRVDIAEGR 93 (103)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEecCC
Confidence 9999999876
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=6.3e-15 Score=131.91 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=69.3
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc--cC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV--LE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~--Ld 186 (775)
....|||+|||+.+++++|. ++|++||+|.+|.|.+. +|+|||+|.+.++|.+||+.|+|.. ++
T Consensus 20 ps~~l~V~NLp~~~te~~L~---~lF~~fG~V~~v~i~~~-----------kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLV---EALQEFGPISYVVVMPK-----------KRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHhccCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 46789999999999999986 99999999999999752 4689999999999999999999986 78
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
||+|+|+|++.|
T Consensus 86 Gr~i~V~~S~~k 97 (100)
T 3r27_A 86 GHPAFVNYSTSQ 97 (100)
T ss_dssp TEEEEEEECSCS
T ss_pred CcEEEEEecccc
Confidence 999999999876
No 74
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=126.23 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=72.7
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
+......|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.|||..+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~~~~~-----------kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMR---KLFEKYGKAGEVFIHKD-----------KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHH---HHTSTTCCCSEEEEETT-----------TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH---HHHhhcCCeEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 34567889999999999999986 89999999999999753 46899999999999999999999999
Q ss_pred CCeEEEEEecCCCcc
Q 004082 186 EGKSLKACFGTTKYC 200 (775)
Q Consensus 186 dGR~LRASfGTTKYC 200 (775)
+|+.|+|.|+..+-.
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 77 RGKQLRVRFACHSAS 91 (99)
T ss_dssp TTBCCEEEESSCCSC
T ss_pred CCceEEEEEcCCCCC
Confidence 999999999988743
No 75
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-15 Score=135.04 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=70.4
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcC--CccC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG--FVLE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDG--s~Ld 186 (775)
....|||+|||+.+++++|. ++|++||+|.+|.|.++ +|+|||+|.+.++|.+||+.++| ..|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~---~lF~~fG~V~~v~i~~~-----------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVI---SLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHH---HHHHHHCCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 45789999999999999986 99999999999999864 46899999999999999999874 7899
Q ss_pred CeEEEEEecCCCccc
Q 004082 187 GKSLKACFGTTKYCH 201 (775)
Q Consensus 187 GR~LRASfGTTKYCs 201 (775)
||+|+|.|+..|.-.
T Consensus 81 Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 81 GQPIYIQFSNHKELK 95 (105)
T ss_dssp TEECCBCCCSSSSCC
T ss_pred CEEEEEEEcCCCCCC
Confidence 999999999887433
No 76
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=128.21 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=73.4
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcC-CcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc-cC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQ-YGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-LE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQ-YGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~-Ld 186 (775)
....|||+|||+.+++++|. ++|++ ||+|..|.|.++. ++ ..+++|||+|.+.++|.+||+.|||.. ++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~---~~F~~~~G~v~~v~i~~~~-~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLY---EFFVKVYPSCRGGKVVLDQ-TG-----VSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHH---HHHHHHCTTEEEEEEEECT-TC-----CEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHhCCCeEEEEEEECC-CC-----CccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 35789999999999999986 99999 9999999999887 32 357899999999999999999999999 99
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
|+.|+|.|+..+
T Consensus 79 g~~l~v~~a~~~ 90 (104)
T 2dhg_A 79 SKPVRLSVAIPK 90 (104)
T ss_dssp SSCCCCCBCCCC
T ss_pred CEeEEEEEccCC
Confidence 999999999776
No 77
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=133.79 Aligned_cols=77 Identities=22% Similarity=0.395 Sum_probs=67.2
Q ss_pred cCEEEEeCCCCCCChHHHHHH-HhhhcCC-cceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 110 RNLVYIVGLPLNLGDEDLLQR-REYFGQY-GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~-~EyFGQY-GKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
..+|||.|||+++.+++|.++ +++|++| |+|++|. +|+|||+|.+.++|.+||+.|||+.+.|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------gG~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------GCSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------TTCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------cCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 345999999999988775433 7999999 5999991 2689999999999999999999999999
Q ss_pred eEEEEEecCCCccc
Q 004082 188 KSLKACFGTTKYCH 201 (775)
Q Consensus 188 R~LRASfGTTKYCs 201 (775)
|.|||+||+++.-.
T Consensus 74 r~i~v~~A~~~sd~ 87 (96)
T 2diu_A 74 NRIIVSFTPKNREL 87 (96)
T ss_dssp SCCEEESSCCSCCC
T ss_pred ceEEEEecCCCcce
Confidence 99999999998533
No 78
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.7e-15 Score=128.79 Aligned_cols=84 Identities=14% Similarity=0.292 Sum_probs=74.6
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.-.....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||+.++| .+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~Ai~~~~~-~~ 83 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLR---KYFEGFGDIEEAVVITDRQTG-----KSRGYGFVTMADRAAAERACKDPNP-II 83 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHH---HHHHTTSCEEEEEESCCSSSC-----CCCSEEEEEESSHHHHHHHHTCSSC-EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeeEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHhCCC-cC
Confidence 34456889999999999999986 999999999999999876542 3578999999999999999999999 89
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+|+.|+|.|+..+
T Consensus 84 ~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 84 DGRKANVNLAYLG 96 (116)
T ss_dssp TTEECEEEESTTT
T ss_pred CCEEEEEEEcccC
Confidence 9999999998665
No 79
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=8.2e-15 Score=122.06 Aligned_cols=78 Identities=14% Similarity=0.343 Sum_probs=69.2
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+ ++|..++||
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLK---DYFTKFGEVVDCTIKMDPNTG-----RSRGFGFILFKDAASVEKVLD-QKEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSTHHHHHHHH-SSCEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEeecCCCC-----ccccEEEEEECCHHHHHHHHH-hCCCEECCE
Confidence 45789999999999999886 999999999999999886543 357899999999999999996 588899999
Q ss_pred EEEEEec
Q 004082 189 SLKACFG 195 (775)
Q Consensus 189 ~LRASfG 195 (775)
.|+|.+|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 80
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=126.40 Aligned_cols=87 Identities=17% Similarity=0.340 Sum_probs=74.6
Q ss_pred ccccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcC
Q 004082 103 SSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG 182 (775)
Q Consensus 103 anVRVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDG 182 (775)
....-.....|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+++|||+|.+.++|.+||+.|||
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g 88 (114)
T 1x5o_A 18 AKQQEQDPTNLYISNLPLSMDEQELE---NMLKPFGQVISTRILRDSSG------TSRGVGFARMESTEKCEAVIGHFNG 88 (114)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHH---HTTTTTSCEEEEEEEECSSS------CEEEEEEEEESCHHHHHHHHHHHBT
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCC------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 33344567889999999999999986 89999999999999988632 3578999999999999999999999
Q ss_pred Ccc--------CCeEEEEEecCCC
Q 004082 183 FVL--------EGKSLKACFGTTK 198 (775)
Q Consensus 183 s~L--------dGR~LRASfGTTK 198 (775)
..+ .|++|+|.|+..+
T Consensus 89 ~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 89 KFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CEEcCCccccCCCCceeEEccCCC
Confidence 999 5788999998754
No 81
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.1e-15 Score=129.45 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=72.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||+. ||..|+|+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 97 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLR---NYYEQWGKLTDCVVMRDPASK-----RSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV 97 (116)
T ss_dssp HTEEEEECCTTCCCHHHHH---HHHTSSCCCSEEEEECCTTTS-----SCCSEEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCCC-----CcCceEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence 4789999999999999986 999999999999999886543 3578999999999999999998 999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..|
T Consensus 98 l~V~~a~~~ 106 (116)
T 1x4b_A 98 VEPKRAVAR 106 (116)
T ss_dssp EEEECCSSC
T ss_pred EEEEECCCC
Confidence 999999887
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=6.6e-15 Score=130.34 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=72.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+|| .|||..++|+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLE---AHFSSCGSINRITILCDKFSG-----HPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHH---HHHHTTSCEEEEEEEEECTTS-----SCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4679999999999999986 999999999999999886442 35789999999999999999 89999999999
Q ss_pred EEEEecCCCc
Q 004082 190 LKACFGTTKY 199 (775)
Q Consensus 190 LRASfGTTKY 199 (775)
|+|.|+.+..
T Consensus 107 l~V~~a~~~~ 116 (124)
T 2jwn_A 107 IKVLPKRTNM 116 (124)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999998753
No 83
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=128.91 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=68.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc--CCccC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH--GFVLE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD--Gs~Ld 186 (775)
....|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.++ |..++
T Consensus 14 p~~~l~V~nLp~~~te~~L~---~~F~~fG~v~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVI---ALGLPFGKVTNILMLKG-----------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HTTTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 35789999999999999986 99999999999998753 4689999999999999999875 67899
Q ss_pred CeEEEEEecCCCc
Q 004082 187 GKSLKACFGTTKY 199 (775)
Q Consensus 187 GR~LRASfGTTKY 199 (775)
||+|+|.|+..+-
T Consensus 80 Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 80 NQPIYIQYSNHKE 92 (101)
T ss_dssp TEECEEEECSCSS
T ss_pred CcEEEEEEcCccc
Confidence 9999999998764
No 84
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.4e-15 Score=127.14 Aligned_cols=75 Identities=24% Similarity=0.527 Sum_probs=68.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+ .+++|||+|.+.++|.+||..|||..++|+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~~~~-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLI---PLFQNFGFILDFKHYP-----------EKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHHTTSCCSEEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCcccCHHHHH---HHHHhCCCEEEEEEec-----------CCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4789999999999999986 8999999999999873 2568999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..|
T Consensus 93 l~V~~a~~~ 101 (101)
T 2la4_A 93 LRTGWGKER 101 (101)
T ss_dssp CCCCBCCCC
T ss_pred EEEEeccCC
Confidence 999999765
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.56 E-value=5.7e-15 Score=135.43 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=75.3
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~---~~F~~~G~v~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLR---RVFEKYGRVGDVYIPRDRYTK-----ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHH---HHHHHHSCEEEEECCCCSSCT-----TSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456899999999999999986 999999999999999886543 367899999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.|+..+
T Consensus 140 ~~l~v~~a~~~ 150 (158)
T 2kn4_A 140 RELRVQMARYG 150 (158)
T ss_dssp SEEEEEEECCS
T ss_pred eEEEEEECCCC
Confidence 99999999875
No 86
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=1.1e-14 Score=134.30 Aligned_cols=82 Identities=15% Similarity=0.307 Sum_probs=74.5
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.++..+. ..+++|||+|.+.++|.+||..|||..|+|+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIY---ELFSKSGDIKKIIMGLDKMKK-----TACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46789999999999999986 999999999999999887542 3578999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|++.+
T Consensus 110 ~l~V~~a~~~ 119 (156)
T 1h2v_Z 110 IIRTDWDAGF 119 (156)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEECCCC
Confidence 9999999864
No 87
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.6e-15 Score=128.52 Aligned_cols=84 Identities=17% Similarity=0.287 Sum_probs=75.2
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
......|||+|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||.. ||..|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLR---SYFSQYGEVVDCVIMKDKTTN-----QSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeCCCCC-----CcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 4456889999999999999986 899999999999999886543 3578999999999999999999 999999
Q ss_pred CeEEEEEecCCCc
Q 004082 187 GKSLKACFGTTKY 199 (775)
Q Consensus 187 GR~LRASfGTTKY 199 (775)
|+.|+|.|+..|-
T Consensus 84 g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 84 GRNIDPKPCTPRG 96 (105)
T ss_dssp TEEEBCCCSCCSS
T ss_pred CEEEEEEEccCCC
Confidence 9999999998873
No 88
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=7.1e-15 Score=128.56 Aligned_cols=78 Identities=21% Similarity=0.515 Sum_probs=71.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
.+.|||+|||+.+++++|. ++|++||.|..|.|.++.. .+|+|||+|.+.++|.+||..|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMY---DIFGKYGPIRQIRVGNTPE--------TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEECSTT--------TTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeCCC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5789999999999999986 9999999999999987532 3678999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..+
T Consensus 77 l~v~~a~~~ 85 (115)
T 3lqv_A 77 LVVLYYNAN 85 (115)
T ss_dssp CEEEECCHH
T ss_pred EEEEEecCC
Confidence 999999875
No 89
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-15 Score=124.64 Aligned_cols=73 Identities=14% Similarity=0.368 Sum_probs=63.1
Q ss_pred CEEEEeCCCCCC------ChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 111 NLVYIVGLPLNL------GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 111 NLVYVvGLp~~i------aeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
+.|||+|||+.+ ++++|. ++|++||+|.+|.|.+.. + .++|+|||+|.+.++|.+||+.|||..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~---~~F~~~G~i~~v~i~~~~-g------~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIH---KIFSKFGKITNDFYPEED-G------KTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHH---HHHHTTCCEEEEECCCBT-T------BCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHH---HHHhhcCCeEEEEecCCC-C------cEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 679999999998 446664 899999999999988432 1 357899999999999999999999999
Q ss_pred cCCe-EEEEE
Q 004082 185 LEGK-SLKAC 193 (775)
Q Consensus 185 LdGR-~LRAS 193 (775)
++|| +|+|+
T Consensus 72 ~~g~~~l~V~ 81 (81)
T 2krb_A 72 LDKQHTFRVN 81 (81)
T ss_dssp CSSSSCCCCC
T ss_pred cCCceeEEeC
Confidence 9999 99874
No 90
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=7.3e-15 Score=130.34 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=68.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc--cC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV--LE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~--Ld 186 (775)
....|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.|+|.. ++
T Consensus 14 p~~~l~V~nLp~~~te~~L~---~~F~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLV---EALEKFGTICYVMMMPF-----------KRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHH---HHHTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 35789999999999999886 99999999999998753 4689999999999999999998754 99
Q ss_pred CeEEEEEecCCCc
Q 004082 187 GKSLKACFGTTKY 199 (775)
Q Consensus 187 GR~LRASfGTTKY 199 (775)
||.|+|.|+..|-
T Consensus 80 Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 80 GQQAFFNYSTSKR 92 (104)
T ss_dssp SSBCEEEECSSSS
T ss_pred CEEEEEEEccCcc
Confidence 9999999998774
No 91
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.6e-15 Score=127.83 Aligned_cols=77 Identities=23% Similarity=0.453 Sum_probs=70.8
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||..|||..++|+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~-----------~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMR---QTFSPFGQIMEIRVFPE-----------KGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHH---HHHHHHSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 46789999999999999986 89999999999999864 46899999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 004082 189 SLKACFGTTKY 199 (775)
Q Consensus 189 ~LRASfGTTKY 199 (775)
.|+|.|+..+-
T Consensus 90 ~l~v~~a~~~~ 100 (109)
T 1x4g_A 90 VVKCYWGKESP 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEecCCCC
Confidence 99999998873
No 92
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=9.3e-15 Score=136.62 Aligned_cols=87 Identities=11% Similarity=0.306 Sum_probs=76.8
Q ss_pred cccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 004082 104 SVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183 (775)
Q Consensus 104 nVRVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs 183 (775)
..+....+.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||..|||.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQ---EKFCDYGEIKNIHLNLDRRTG-----FSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTS-----SEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH---HHhhcCCCEEEEEEEecCCCC-----cEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456667899999999999999886 999999999999999886543 35789999999999999999999999
Q ss_pred ccCCeEEEEEecCCC
Q 004082 184 VLEGKSLKACFGTTK 198 (775)
Q Consensus 184 ~LdGR~LRASfGTTK 198 (775)
.|+|+.|+|.|+..+
T Consensus 138 ~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 138 EIMGQTIQVDWCFVK 152 (165)
T ss_dssp EETTEECEEEESEEC
T ss_pred EECCEEEEEEEecCC
Confidence 999999999999765
No 93
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.5e-15 Score=121.19 Aligned_cols=74 Identities=18% Similarity=0.410 Sum_probs=67.6
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh-cCCccCC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV-HGFVLEG 187 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaL-DGs~LdG 187 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||+.| ||..++|
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~---~~f~~~G~i~~~~~~~~-----------kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLR---NHFYQFGEIRTITVVQR-----------QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHH---HHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CccEEEEcCCCCCCCHHHHH---HHHHhCCCEeEEEEECC-----------CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 35779999999999999986 89999999999999863 468999999999999999999 9999999
Q ss_pred eEEEEEecC
Q 004082 188 KSLKACFGT 196 (775)
Q Consensus 188 R~LRASfGT 196 (775)
+.|+|.||.
T Consensus 77 ~~l~v~~ak 85 (85)
T 2ytc_A 77 RRLNVKWGR 85 (85)
T ss_dssp EECCEEECC
T ss_pred CEEEEEecC
Confidence 999999974
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=5.2e-15 Score=127.62 Aligned_cols=81 Identities=12% Similarity=0.239 Sum_probs=70.5
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecC-CccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTA-AGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~-~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.....|||+|||+.+++++|. ++|++|| |..|.|.++. .++ ..+|+|||+|.+.++|.+|| .|||..++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G-i~~v~i~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIK---EFFRGLN-ISAVRLPREPSNPE-----RLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHH---HHSCSSC-EEEEECSCCTTTTC-----CCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHH---HHHHhcC-CeEEEEEecCCcCC-----ccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 345789999999999999986 8999999 9999998876 222 35789999999999999999 99999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
||.|+|.|+..+
T Consensus 87 g~~l~V~~a~~~ 98 (100)
T 2j76_E 87 NRRIRVDVADQA 98 (100)
T ss_dssp TBCCCCEECCCS
T ss_pred CeEEEEEeccCC
Confidence 999999999865
No 95
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.7e-15 Score=130.17 Aligned_cols=75 Identities=12% Similarity=0.211 Sum_probs=68.4
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
.+.|||+|||+.+++++|. ++|++||+|.+|.|.+ .+++|||+|.+.++|.+||+.|||..++||.
T Consensus 10 ~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQ---ETFSRFGSLGRVLLPE-----------GGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCS-----------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEeC-----------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 5789999999999999886 8999999999998864 2467999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..+
T Consensus 76 l~V~~a~~~ 84 (111)
T 1whx_A 76 LYLEWAPIG 84 (111)
T ss_dssp CEEEEEETT
T ss_pred EEEEECCCC
Confidence 999999764
No 96
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=4.8e-15 Score=120.31 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=68.4
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 004082 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (775)
Q Consensus 112 LVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LR 191 (775)
.|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.++ ..++||.|+
T Consensus 2 ~l~v~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLR---EYFGQFGEVKECLVMRDPLTK-----RSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CEEEESCCSSCCSHHHH---HHHTTTSCCCCEEEECCCCSS-----SCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred EEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEecCCCCC-----CcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 58999999999999986 899999999999999876542 357899999999999999999999 999999999
Q ss_pred EEec
Q 004082 192 ACFG 195 (775)
Q Consensus 192 ASfG 195 (775)
|.+|
T Consensus 73 v~~a 76 (77)
T 1uaw_A 73 PKVA 76 (77)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9986
No 97
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=6.8e-15 Score=124.54 Aligned_cols=82 Identities=18% Similarity=0.456 Sum_probs=71.0
Q ss_pred ccCEEEEeCCCCCCChHHHHHH-HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~-~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
..+.|||+|||+.+++++|.+. +++|++||.|..|.|.++. ..+|+|||+|.+.++|.+||..|||..++|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL--------KMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHH--------HHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCC--------CcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4578999999999999887411 4899999999999987431 135789999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 79 ~~l~v~~a~~~ 89 (97)
T 1nu4_A 79 KPMRIQYAKTD 89 (97)
T ss_dssp EECEEEECSSC
T ss_pred cEEEEEEccCC
Confidence 99999999876
No 98
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=1.6e-14 Score=124.73 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=68.1
Q ss_pred ccCEEEEeCCCC-CCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 109 QRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 109 QrNLVYVvGLp~-~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
..+.|||+|||+ .+++++|. ++|++||+|..|.|. +|+|||+|.+.++|.+||+.|||..++|
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLF---RIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHH---HHHGGGSCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467899999998 99999886 899999999999983 3689999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999999875
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=6.1e-15 Score=128.49 Aligned_cols=78 Identities=14% Similarity=0.341 Sum_probs=67.9
Q ss_pred cCEEEEeCCCCCC------ChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCC
Q 004082 110 RNLVYIVGLPLNL------GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 183 (775)
Q Consensus 110 rNLVYVvGLp~~i------aeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs 183 (775)
.+.|||+|||+.+ ++++|. ++|++||+|..|.|.+.. + .++|+|||+|.+.++|.+||..|||.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~---~~F~~~G~v~~v~i~~~~-g------~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIH---KIFSKFGKITNDFYPEED-G------KTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHH---HHHGGGSCEEEEECCCBT-T------BSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHH---HHHhcCCCEEEEEeeCCC-C------CeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 5789999999998 446664 899999999999998422 1 35789999999999999999999999
Q ss_pred ccCCe-EEEEEecCC
Q 004082 184 VLEGK-SLKACFGTT 197 (775)
Q Consensus 184 ~LdGR-~LRASfGTT 197 (775)
.++|| .|+|.+++.
T Consensus 85 ~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTD 99 (105)
T ss_dssp ECSTTCEEEEECSCC
T ss_pred ccCCCceEEEEEcch
Confidence 99999 999999875
No 100
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=121.55 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=69.7
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
......|||+|||+.+++++|. ++|++||+|..|.|.+ ++|||+|.+.++|.+||+.|||..++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELR---AKFEEYGPVIECDIVK-------------DYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHH---HHHHTTSCCCEEEECS-------------SEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3456889999999999999986 8999999999999863 27999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
|+.|+|.|++.+
T Consensus 71 g~~l~V~~a~~~ 82 (92)
T 2dgt_A 71 GKRMHVQLSTSR 82 (92)
T ss_dssp TEEEEEEESSCC
T ss_pred CcEEEEEEccCC
Confidence 999999999887
No 101
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=132.52 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=69.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcC--CccC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG--FVLE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDG--s~Ld 186 (775)
....|||+|||+.+++++|. ++|++||+|.+|.|.++ +|+|||+|.+.++|.+||+.++| ..|+
T Consensus 30 ps~~LfVgNLp~~vte~dL~---~lF~~fG~V~~v~i~~~-----------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVI---SLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHTTTSCCCEEEEEGG-----------GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 35679999999999999886 99999999999999864 46899999999999999999985 6899
Q ss_pred CeEEEEEecCCCcc
Q 004082 187 GKSLKACFGTTKYC 200 (775)
Q Consensus 187 GR~LRASfGTTKYC 200 (775)
||+|+|.|+..|--
T Consensus 96 Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 96 GQPIYIQFSNHKEL 109 (119)
T ss_dssp TBCCEEEECSSSSC
T ss_pred CeEEEEEEccCCCC
Confidence 99999999987743
No 102
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=121.26 Aligned_cols=80 Identities=20% Similarity=0.432 Sum_probs=72.1
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++| .|..|.|.++..+ .++|+|||+|.+.++|.+||+ |||..++|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~---~~F~~~-~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVM---EFLAPL-KPVAIRIVRNAHG------NKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHH---HHHTTS-CCSEEEEEECTTS------CEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCccEEEEECCCCCCCHHHHH---HHHhhC-CceEEEEEECCCC------CCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 346789999999999999986 999999 9999999988432 357899999999999999999 99999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.+++.+
T Consensus 77 r~i~v~~a~~~ 87 (91)
T 2dgw_A 77 RYIEVFREKSG 87 (91)
T ss_dssp EEEEEEEESSC
T ss_pred cEEEEEECCcC
Confidence 99999999876
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=6e-15 Score=126.31 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=69.5
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEE
Q 004082 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 190 (775)
Q Consensus 111 NLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~L 190 (775)
+.|||+|||+.+++++|. ++|++||+|..|.|.++ ++++|||+|.+.++|.+||+.|||..++|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELE---RAFSYYGPLRTVWIARN----------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHH---HHHHHHCCCSEEEEESS----------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeC----------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 479999999999999986 99999999999999875 25689999999999999999999999999999
Q ss_pred EEEecCCC
Q 004082 191 KACFGTTK 198 (775)
Q Consensus 191 RASfGTTK 198 (775)
+|.|+..+
T Consensus 68 ~V~~a~~~ 75 (101)
T 2hvz_A 68 RVELSTGM 75 (101)
T ss_dssp EEEESSSC
T ss_pred EEEEccCC
Confidence 99999886
No 104
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=8.8e-15 Score=123.91 Aligned_cols=78 Identities=26% Similarity=0.365 Sum_probs=69.9
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEE-EEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV-SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KI-vI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
....|||+|||+.+++++|. ++|++||+|..| .|.+++.+ +.|||+|.+.++|.+||..|||..++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~i~~~~~~---------~~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLD---SLLVQYGVVESCEQVNTDSET---------AVVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHH---HHHHHHSCEEEEEEECCSSSS---------EEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHH---HHHHhcCCeEEEEEeecCCCC---------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999985 999999999999 57776543 239999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.|+..+
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 99999999876
No 105
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=126.20 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=69.4
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC-
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG- 187 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG- 187 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.++ ++|||+|.+.++|.+||+.|||..|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLK---DHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHH---HHHGGGSCEEEEEEETT------------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEecC------------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 36789999999999999986 89999999999999764 489999999999999999999999999
Q ss_pred ----eEEEEEecCCC
Q 004082 188 ----KSLKACFGTTK 198 (775)
Q Consensus 188 ----R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 79 ~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 79 EGETAYIRVKVDGPR 93 (108)
T ss_dssp TSCEEEEEEEESSCC
T ss_pred cCcceEEEEEeCCCC
Confidence 99999999885
No 106
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=124.55 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=68.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||.|. +.+..+ ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~---~~F~~~G~v~-~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLK---RALRELGSVP-LRLTWQ---------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHHHHTTCCC-SEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCcCcHHHHH---HHHHhcCCEE-EEEEcC---------CCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45789999999999999986 8999999996 555543 1367899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 107
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=1.6e-14 Score=127.19 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=71.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||..+ |..++||.
T Consensus 25 ~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~tg-----~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLR---EYFGQFGEVKECLVMRDPLTK-----RSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp -CCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCCTTTC-----CCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHccCCeEEEEEEECCCCC-----CcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 4679999999999999986 899999999999999886543 35789999999999999999986 59999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.++..+
T Consensus 96 l~V~~a~~~ 104 (109)
T 2rs2_A 96 IDPKVAFPR 104 (109)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999999876
No 108
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=121.22 Aligned_cols=73 Identities=22% Similarity=0.394 Sum_probs=67.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|. +++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIR---SLFEQYGKVLECDII-------------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CEEEEEESCCSSCCHHHHH---HHHHTSSCEEEEEEE-------------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CeEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 5689999999999999986 999999999999986 247999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..+
T Consensus 72 l~v~~a~~~ 80 (90)
T 2dnq_A 72 INVEASKNK 80 (90)
T ss_dssp CEEECSSCC
T ss_pred EEEEECCCC
Confidence 999999876
No 109
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=125.40 Aligned_cols=87 Identities=14% Similarity=0.288 Sum_probs=74.7
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeE-EEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK-VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~K-IvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.....|||+|||+.+++++|. ++|++||.|.+ |.|.++..+ .++|+|||+|.++++|.+||.. ||..++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~~v~i~~~~~g------~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIV---QFFSGLEIVPNGMTLPVDFQG------RSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHH---HHTTTCCEEEEEEECCBCSSS------CBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCcceeEEEEECCCC------CcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 456789999999999999986 99999999998 878777432 3578999999999999999998 999999
Q ss_pred CeEEEEEecCCCcccccc
Q 004082 187 GKSLKACFGTTKYCHAWL 204 (775)
Q Consensus 187 GR~LRASfGTTKYCssFL 204 (775)
||.|+|.+++.+.-..++
T Consensus 83 gr~i~v~~~~~~~~~~~~ 100 (104)
T 1wg5_A 83 HRYIEIFKSSRAEVRTSG 100 (104)
T ss_dssp SSCCEEEEECTTTSCCSS
T ss_pred CcEEEEEECCHHHHHHhc
Confidence 999999999887544433
No 110
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.5e-14 Score=122.81 Aligned_cols=80 Identities=20% Similarity=0.441 Sum_probs=71.5
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||. +|..++|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLK---EYFSTFGEVLMVQVKKDLKTG-----HSKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHH---HHHGGGSCEEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred CCCEEEEEcCCCcCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 45779999999999999986 999999999999999886542 357899999999999999999 57899999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..|
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 9999999886
No 111
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-15 Score=134.73 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=73.1
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeE--EEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCC--
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK--VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF-- 183 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~K--IvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs-- 183 (775)
...+.|||+|||+.+++++|. ++|++||+|.. |.|.+++.++ .++|+|||+|.+. +|.+||..|||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~---~~F~~~G~v~~~~v~i~~d~~tg-----~~rG~aFV~f~~~-~a~~Ai~~l~g~~~ 91 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSIL---GALAPYAVLSSSNVRVIKDKQTQ-----LNRGFAFIQLSTI-EAAQLLQILQALHP 91 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHH---HHHGGGCCCCTTTEECCBCSSSS-----SBCSCEEEECCHH-HHHHHHHHHTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHHhCCcceeeEEEEEcCCCC-----CcceEEEEEECCH-HHHHHHHHhcCCCC
Confidence 346789999999999999986 99999999966 9999887543 3578999999999 999999999999
Q ss_pred --ccCCeEEEEEecCCC
Q 004082 184 --VLEGKSLKACFGTTK 198 (775)
Q Consensus 184 --~LdGR~LRASfGTTK 198 (775)
.++||.|+|.|+..+
T Consensus 92 ~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 92 PLTIDGKTINVEFAKGS 108 (131)
T ss_dssp SCCGGGCCCCCEECCCS
T ss_pred CccCCCEEEEEEECCCC
Confidence 999999999999876
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=122.25 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=67.9
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||.| .|.++..+ ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v---~~~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQ---EVFEKATFI---KVPQNQNG------KSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHCSSCSEE---ECCBCSSS------CBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCEE---EEEECCCC------CEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 46889999999999999986 899999988 34444222 3578999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 82 ~l~v~~a~~~ 91 (101)
T 2fc9_A 82 AIRLELQGPR 91 (101)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEcCCC
Confidence 9999999887
No 113
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5e-15 Score=129.22 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=68.3
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
..+.|||+|||+.+++++|. ++|++||.|..|.+..+..++ ..+++|||+|.+.++|.+||+.|||..++|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~~~~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLV---SLFARFQEKKGPPIQFRMMTG-----RMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHH---HHTHHHHHSSSSCCEEEEECS-----SSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCccceEEEEEcCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 35789999999999999986 899999999543332221111 2468999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 96 ~l~v~~a~~~ 105 (115)
T 2cpx_A 96 ILVIEFGKNK 105 (115)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEccCC
Confidence 9999999886
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.6e-15 Score=128.94 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=73.4
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcce-eEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKV-LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI-~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.+...|||+|||+.+++++|. ++|++||.| ..|.|.+++.+ ..+|+|||+|.+.++|.+||+. ||..|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v~~~v~i~~d~~g------~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVL---QFLEGIPVDENAVHVLVDNNG------QGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHH---HHTTTSCCCSTTEEECCCTTS------SCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHH---HHHHhCCCcCCeEEEEECCCC------CcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 346789999999999999986 999999999 88999887732 3578999999999999999998 999999
Q ss_pred CeEEEEEecCCCcc
Q 004082 187 GKSLKACFGTTKYC 200 (775)
Q Consensus 187 GR~LRASfGTTKYC 200 (775)
||.|+|.+++.+--
T Consensus 83 gr~i~v~~a~~~~~ 96 (114)
T 2cpy_A 83 GREAFVHVVTLEDM 96 (114)
T ss_dssp TEEEEEEEECHHHH
T ss_pred CeEEEEEECCHHHH
Confidence 99999999987643
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=131.56 Aligned_cols=77 Identities=17% Similarity=0.331 Sum_probs=68.3
Q ss_pred ccCEEEEeCCCCC-CChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcC--Ccc
Q 004082 109 QRNLVYIVGLPLN-LGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG--FVL 185 (775)
Q Consensus 109 QrNLVYVvGLp~~-iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDG--s~L 185 (775)
....|||+|||+. +++++|. ++|++||+|.+|.|.+. +++|||+|.+.++|.+||+.|+| ..+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~---~lF~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVL---KLAEPYGKIKNYILMRM-----------KSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHH---TTTTTTSCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCEEEEeCCCCccCCHHHHH---HHHHhcCCEEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3578999999998 9999986 99999999999999742 56899999999999999999875 569
Q ss_pred CCeEEEEEecCCCc
Q 004082 186 EGKSLKACFGTTKY 199 (775)
Q Consensus 186 dGR~LRASfGTTKY 199 (775)
+||.|+|.|+..|.
T Consensus 90 ~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 90 QGRCVKVDLSEKYK 103 (112)
T ss_dssp SSSCCEEEEECSCS
T ss_pred CCEEEEEEECcccc
Confidence 99999999998764
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.52 E-value=2.2e-14 Score=123.76 Aligned_cols=74 Identities=22% Similarity=0.457 Sum_probs=68.2
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
+...|||+|||+.+++++|. ++|++||+|..|.|.+ ++|||+|.+.++|.+||+.|||..++|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILE---KAFSQFGKLERVKKLK-------------DYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHH---HHHHHHSCEEEEEECS-------------SCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEC-------------CEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 45789999999999999986 9999999999998863 3799999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 74 ~l~v~~a~~~ 83 (103)
T 2dgu_A 74 NIEIVFAKPP 83 (103)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 117
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=2.9e-14 Score=125.77 Aligned_cols=75 Identities=20% Similarity=0.507 Sum_probs=69.0
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
...+.|||+|||+.+++++|. ++|++||+|..|.|. +|+|||+|.+.++|.+||+.|||..++|
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~-------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELN---EIFGPFGPMKEVKIL-------------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHH---HHHTTTSCCCEEEEE-------------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346889999999999999986 899999999999987 2589999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 93 ~~l~V~~a~~~ 103 (108)
T 2jvo_A 93 QPLEVVYSKLP 103 (108)
T ss_dssp EECEEESCSCC
T ss_pred eEEEEEEecCC
Confidence 99999999875
No 118
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=120.34 Aligned_cols=75 Identities=16% Similarity=0.307 Sum_probs=68.5
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.+ ++|||+|.+.++|.+||+.|||..++|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELR---SLFERRGRVIECDVVK-------------DYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHH---HHHHHHSCEEEEEECS-------------SCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHcCCCEEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345779999999999999986 8999999999999863 279999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 71 ~~l~v~~a~~~ 81 (90)
T 2dnp_A 71 KRINVELSTKG 81 (90)
T ss_dssp EECEEEESCCC
T ss_pred cEEEEEECCCC
Confidence 99999999876
No 119
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.1e-14 Score=122.74 Aligned_cols=76 Identities=21% Similarity=0.407 Sum_probs=69.0
Q ss_pred ccCEEEEeCCCC-CCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 109 QRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 109 QrNLVYVvGLp~-~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
....|||+|||+ .+++++|. ++|++||+|..|.|. +++|||+|.+.++|.+||..|||..++|
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLF---RIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHH---HHHTTTCCCCEEEEE-------------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 467899999999 99999886 899999999999984 3589999999999999999999999999
Q ss_pred eEEEEEecCCCcc
Q 004082 188 KSLKACFGTTKYC 200 (775)
Q Consensus 188 R~LRASfGTTKYC 200 (775)
+.|+|.|+..+--
T Consensus 73 ~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 73 KKLILEVSSSNAR 85 (96)
T ss_dssp TTBCEEEEECCCC
T ss_pred cEEEEEEcCcCCC
Confidence 9999999987643
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=4.7e-14 Score=126.52 Aligned_cols=110 Identities=17% Similarity=0.373 Sum_probs=88.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
++.|||+|||+.+++++|. ++|++||+|.+|.|.++..++ .++|+|||+|.+.++|.+|++.|||..++|+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~~~~~~~~~-----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFR---SLFGSIGEIESCKLVRDKITG-----QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceEEEcCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----cceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 5789999999999999986 999999999999999876432 35789999999999999999999999999999
Q ss_pred EEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 190 LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
|+|.|+..+.- .....++|+.-+. ...|.++|......
T Consensus 74 l~v~~~~~~~~--------~~~~~~l~v~nl~---~~~t~~~l~~~f~~ 111 (167)
T 1fxl_A 74 IKVSYARPSSA--------SIRDANLYVSGLP---KTMTQKELEQLFSQ 111 (167)
T ss_dssp CEEEECCCCCG--------GGTTCEEEEESCC---TTCCHHHHHHHHGG
T ss_pred EEEEecCCCcc--------cCCCCcEEECCCC---CcCCHHHHHHHHHh
Confidence 99999986532 1223445555554 34688888775543
No 121
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=4.8e-14 Score=131.54 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=67.6
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC--e
Q 004082 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG--K 188 (775)
Q Consensus 111 NLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG--R 188 (775)
-+|||+||++.+++++|. ++|++||+|.+|+|.++. .++.|||+|.+.++|.+||++|||..|.| +
T Consensus 29 L~I~V~NL~~~vte~~L~---~lFs~yG~V~~V~i~~~~---------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLH---QIFSKFGTVLKIITFTKN---------NQFQALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp EEEEEESCCSCCCHHHHH---HHHTTSSCEEEEEEEEET---------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred EEEEECCCCCCCCHHHHH---HHHhCcCCEEEEEEEcCC---------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 458999999999988874 999999999999997532 23449999999999999999999999988 9
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.||+.|++.+
T Consensus 97 ~LrI~~ak~~ 106 (130)
T 3zzy_A 97 TLRIDFSKLT 106 (130)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecCCC
Confidence 9999999887
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.51 E-value=1.4e-14 Score=130.35 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=69.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCc-ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYG-KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
....|||+|||+.+++++|. ++|++|| +|..|.|..+ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~---~~F~~~G~~v~~v~i~~~---------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLK---DLARENSLETTFSSVNTR---------DFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHH---HHHHHHTCCCSEEECSSC---------SSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHHhCCeeEEEEEEcC---------CCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35789999999999999985 9999999 9999988632 146789999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.+++.+
T Consensus 95 r~i~V~~a~~~ 105 (111)
T 2jvr_A 95 SVITVERDDNP 105 (111)
T ss_dssp EEEEEEESCC-
T ss_pred eEEEEEECCCC
Confidence 99999998754
No 123
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.7e-14 Score=126.44 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=73.0
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||.|..|.|.++..++ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLR---NAFKDFPSYLSGHVMWDMQTG-----SSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHH---HHHTTSTTEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEECCCCCCCCHHHHH---HHHhccCCeeEEEEEecCCCC-----CcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 345789999999999999986 999999999999999876542 357899999999999999999999999999
Q ss_pred eEEEEEecC
Q 004082 188 KSLKACFGT 196 (775)
Q Consensus 188 R~LRASfGT 196 (775)
|.|+|.||+
T Consensus 157 ~~i~v~~a~ 165 (166)
T 3md3_A 157 RPLRINWAA 165 (166)
T ss_dssp EECEEEESC
T ss_pred cEEEEEecC
Confidence 999999985
No 124
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=6.4e-14 Score=151.56 Aligned_cols=88 Identities=11% Similarity=0.221 Sum_probs=77.4
Q ss_pred ccccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 105 VRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 105 VRVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
+.....+.|||+|||+.+++++|. ++|++||+|+.|.|+.+..++ .++|+|||+|.+.++|.+||..|||..
T Consensus 97 ~~~~~~~~lfV~nL~~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 97 AQGDAFKTLFVARVNYDTTESKLR---REFEVYGPIKRIHMVYSKRSG-----KPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHH---HHHHHcCCeeEEEeeccCCCC-----CccceEEEeeccHHHHHHHHHHcCCCE
Confidence 344556799999999999999886 999999999999999876442 357899999999999999999999999
Q ss_pred cCCeEEEEEecCCCcc
Q 004082 185 LEGKSLKACFGTTKYC 200 (775)
Q Consensus 185 LdGR~LRASfGTTKYC 200 (775)
|+|+.|+|.|+..+-.
T Consensus 169 i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 169 IDGRRVLVDVERGRTV 184 (437)
T ss_pred ECCEEEEEEEeCCCCC
Confidence 9999999999987643
No 125
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5e-14 Score=120.44 Aligned_cols=75 Identities=21% Similarity=0.410 Sum_probs=68.4
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCC--cceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQY--GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQY--GKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
....|||+|||+.+++++|. ++|++| |+|..|.+. +++|||+|.+.++|.+||..|||..++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~g~v~~~~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIE---KEFNNIKPGAVERVKKI-------------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHHTTSTTCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CcCEEEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEEe-------------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 46789999999999999986 899999 999998764 358999999999999999999999999
Q ss_pred CeEEEEEecCCCc
Q 004082 187 GKSLKACFGTTKY 199 (775)
Q Consensus 187 GR~LRASfGTTKY 199 (775)
|+.|+|.|+..+.
T Consensus 78 g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 78 GSPIEVTLAKPVD 90 (99)
T ss_dssp TEEEEEECCCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998873
No 126
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=2.4e-14 Score=131.17 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=72.0
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
......|||+|||+.+++++|. ++|++||+|..|.|.++ ++|+|||+|.+.++|.+||..|||..++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELE---RAFGYYGPLRSVWVARN----------PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHH---HHHHHHSCEEEEEECSS----------SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhhCCEEEEEEeeC----------CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4456889999999999999886 99999999999999865 2578999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
||.|+|.|+..+
T Consensus 137 g~~l~v~~a~~~ 148 (150)
T 2i2y_A 137 GCRVRVELSNGE 148 (150)
T ss_dssp SSCCEEEECCCC
T ss_pred CeEEEEEEcCCC
Confidence 999999999876
No 127
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=1.2e-14 Score=133.07 Aligned_cols=86 Identities=17% Similarity=0.304 Sum_probs=76.0
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.......|||+|||+.+++++|. ++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||+.|||..+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g-----~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLR---RVFEKYGRVGDVYIPRDRYTK-----ESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHH---HHHGGGSCCSEEECCCCSSSS-----SCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34556789999999999998886 899999999999998876542 3578899999999999999999999999
Q ss_pred CCeEEEEEecCCCc
Q 004082 186 EGKSLKACFGTTKY 199 (775)
Q Consensus 186 dGR~LRASfGTTKY 199 (775)
+|+.|+|.|+..+.
T Consensus 115 ~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 115 DGRELRVQMARYGR 128 (135)
T ss_dssp SSSCCEEEECCCCC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999998763
No 128
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.3e-15 Score=131.18 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=70.1
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||.|..+++..+..++ .++|+|||+|.+.++|.+||. |||..|+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~~~~~~~~~~g-----~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVI---DFFKKLDIVEDSIYIAYGPNG-----KATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHH---HHSCSSCBCTTTCEEEECTTS-----SEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred CCCcEEEEeCCCCCCCHHHHH---HHHHhcCCccceEEEEECCCC-----CCCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 345789999999999999986 999999999985554443332 357899999999999999999 99999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.+++.+
T Consensus 94 r~i~V~~a~~~ 104 (124)
T 1wel_A 94 RFIQVHPITKK 104 (124)
T ss_dssp SCBEEEEECHH
T ss_pred cEEEEEECCHH
Confidence 99999998754
No 129
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=6.3e-14 Score=129.21 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=66.1
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC--eE
Q 004082 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG--KS 189 (775)
Q Consensus 112 LVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG--R~ 189 (775)
.|||+||++.+++++|. ++|++||+|.+|+|.+. .+++|||+|.+.++|.+||++|||..|+| +.
T Consensus 27 ~l~V~NL~~~vt~~~L~---~~Fs~yG~V~~v~i~~~----------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLY---TVCNPVGKVQRIVIFKR----------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEESCCSCCCHHHHH---HHHTTTSCEEEEEEEES----------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEcCcCCCCCHHHHH---HHHHhcCCEEEEEEEeC----------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 47999999999988874 99999999999999642 12359999999999999999999999988 69
Q ss_pred EEEEecCCCc
Q 004082 190 LKACFGTTKY 199 (775)
Q Consensus 190 LRASfGTTKY 199 (775)
|+|.|+..+-
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999998873
No 130
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=2.1e-14 Score=128.16 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=71.6
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcc---eeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGK---VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGK---I~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
....|||+|||+.+++++|. ++|++||. |..|.|.+++.+ .++|+|||+|.+.++|.+||+ +||..|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~~~~v~~v~i~~~~~g------~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQ---NFLSDCTIHDGVAGVHFIYTREG------RQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHTTTSCBTTGGGGEEEEECSSS------CEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCccCceeEEEEECCCC------CCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 45789999999999999986 99999999 899999988653 357899999999999999999 999999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+||.|+|.+++.+
T Consensus 86 ~gr~i~V~~a~~~ 98 (118)
T 2db1_A 86 GHRYIEVFKSHRT 98 (118)
T ss_dssp TTEEEEEEEECHH
T ss_pred CCeEEEEEECCHH
Confidence 9999999987543
No 131
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.50 E-value=5.7e-14 Score=132.01 Aligned_cols=82 Identities=22% Similarity=0.396 Sum_probs=74.6
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
..+.|||+|||..+++++|. ++|++||+|..|.|.++..++ .++++|||+|.+.++|.+||+.|||..++||
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 195 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIK---SVFEAFGKIKSATLARDPTTG-----KHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 195 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHH---HHHTTSSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCcEEEEeCCCCcCCHHHHH---HHHhccCCeeEEEEEecCCCC-----CcCceEEEEecCHHHHHHHHHHccCCEeCCc
Confidence 35789999999999999986 999999999999999886442 3578999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+.++
T Consensus 196 ~i~V~~a~~~ 205 (216)
T 2qfj_A 196 YLRVGKAVTP 205 (216)
T ss_dssp BCEEEECSSC
T ss_pred EEEEEEecCC
Confidence 9999999887
No 132
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.50 E-value=5e-14 Score=127.20 Aligned_cols=110 Identities=16% Similarity=0.327 Sum_probs=89.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
.+.|||+|||+.+++++|. ++|++||+|.+|.|.+++.++ .++|+|||+|.+.++|.+||+.+||..++|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELY---ALFRAIGPINTCRIMRDYKTG-----YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ccEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEeCCCC-----ccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 4689999999999999986 999999999999999876542 24689999999999999999999999999999
Q ss_pred EEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 190 LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
|+|.|+..+- .-....++|+.-+.. ..|.+||......
T Consensus 75 l~v~~~~~~~--------~~~~~~~l~v~nl~~---~~t~~~l~~~f~~ 112 (168)
T 1b7f_A 75 LKVSYARPGG--------ESIKDTNLYVTNLPR---TITDDQLDTIFGK 112 (168)
T ss_dssp CEEEECCCCS--------STTTTCEEEEESCCT---TCCHHHHHHHHTS
T ss_pred EEEEecCCCc--------ccCCCCCEEEeCCCC---CCCHHHHHHhhhc
Confidence 9999988652 122345677766653 4788888775543
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=6.5e-15 Score=119.26 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 004082 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (775)
Q Consensus 112 LVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LR 191 (775)
+|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+. +|..++|+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIR---EYFGGFGEVESIELPMDNKTN-----KRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHH---HHHHHHSCCSEECCCCSCCCS-----SSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 48999999999999986 899999999999998876542 3578999999999999999995 99999999999
Q ss_pred EEec
Q 004082 192 ACFG 195 (775)
Q Consensus 192 ASfG 195 (775)
|.+|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 134
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-14 Score=120.82 Aligned_cols=75 Identities=23% Similarity=0.408 Sum_probs=65.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcc-eeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcC-CccC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGK-VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG-FVLE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGK-I~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDG-s~Ld 186 (775)
....|||+|||+.+++++|. ++|++||. |..+.+. ++++|||+|.+.++|.+||+.||| ..++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~vv~~~~~~------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLR---QLFGDRKLPLAGQVLL------------KSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHH---HHHHHTTCCCSSCEEE------------ETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCceEEEEEc------------CCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 35689999999999999986 89999999 5555542 146899999999999999999999 9999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
|+.|+|.|+..+
T Consensus 72 g~~l~v~~a~~~ 83 (93)
T 2cqh_A 72 GKIMEVDYSVSK 83 (93)
T ss_dssp TEECEEEECCCC
T ss_pred CEEEEEEEccCc
Confidence 999999999876
No 135
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=9.6e-14 Score=124.39 Aligned_cols=109 Identities=14% Similarity=0.299 Sum_probs=87.4
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEE
Q 004082 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 191 (775)
Q Consensus 112 LVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LR 191 (775)
.|||+|||+.+++++|. ++|++||+|..|.|.+++.+ ..+|+|||+|.+.++|.+||+.|||..++|+.|+
T Consensus 2 ~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 72 (166)
T 3md3_A 2 VLYVGNLDKAITEDILK---QYFQVGGPIANIKIMIDKNN------KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVK 72 (166)
T ss_dssp EEEEEEEETTCCHHHHH---HHHGGGSCEEEEEEECCCC-------CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEECCCCCcCCHHHHH---HHHHhcCCeEEEEEEECCCC------CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence 69999999999999986 99999999999999987653 2578999999999999999999999999999999
Q ss_pred EEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 192 ACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 192 ASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
+.++..+-- ..-....++|+.-+.. ..|.++|......
T Consensus 73 v~~~~~~~~------~~~~~~~~l~v~nl~~---~~t~~~l~~~f~~ 110 (166)
T 3md3_A 73 INWAFQSQQ------SSSDDTFNLFVGDLNV---NVDDETLRNAFKD 110 (166)
T ss_dssp EEECCCCCC------CCCTTCEEEEEESCCT---TCCHHHHHHHHTT
T ss_pred EEEcCCCCC------CCCCCCceEEECCCCC---CCCHHHHHHHHhc
Confidence 999876521 2222334566655543 4688888875543
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=6.7e-15 Score=126.03 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=68.6
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||.|.. .+.++..++ .++|+|||+|.+.++|.+||+ |||..++||.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~-~~~~~~~~g-----~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELK---VAISELFAKND-LAVVDVRTG-----TNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp SEEEEEECCCTTSCHHHHH---HHHHHHHHHHT-CCCCEEEEE-----TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCcce-EEEecCCCC-----CcCcEEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 5689999999999999986 89999999988 444443322 357899999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..|
T Consensus 87 l~V~~a~~~ 95 (101)
T 1fj7_A 87 IKLEKPKGR 95 (101)
T ss_dssp CEEECCSCC
T ss_pred EEEEEcCCC
Confidence 999999876
No 137
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.49 E-value=8.8e-15 Score=125.15 Aligned_cols=68 Identities=43% Similarity=1.046 Sum_probs=61.1
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccccccchhHHH
Q 004082 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCERL 75 (775)
Q Consensus 3 de~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~~~~~~~e~l 75 (775)
.+++.+||+|+|+++++|..|+||+||+++|++||+++.+ ..+++||.||++|+...+.++.++.|++
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~-----~~~~~CP~CR~~~~~~~~~~~~~~~~~~ 75 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT-----DENGLCPACRKPYPEDPAVYKPLSQEEL 75 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT-----SSCSBCTTTCCBCSSCSSCCCSCCCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh-----cCCCCCCCCCCccCCCchhhccCCHHHH
Confidence 3567899999999999999999999999999999999963 3578999999999999999999888764
No 138
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.6e-14 Score=119.03 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=70.0
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
+......|||+|||+.+++++|. ++|++|+ .|.+.++..+. ..+++|||+|.+.++|.+||+.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~---~~F~~~~---~~~~~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLK---ESFDGSV---RARIVTDRETG-----SSKGFGFVDFNSEEDAKAAKEAMEDGEI 79 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHH---HTSTTCS---EEEEEECSSSC-----SEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHH---HHhcCCe---EEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 45567889999999999999986 9999985 45565554332 3578999999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+|+.|+|.|+..+
T Consensus 80 ~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 80 DGNKVTLDWAKPK 92 (102)
T ss_dssp TTEECEEEECCCC
T ss_pred CCeEEEEEEecCC
Confidence 9999999999886
No 139
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=5e-14 Score=128.00 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=71.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
.+.|||+|||+.+++++|. ++|++||+|..|.|.++..++ .++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVK---ELLTSFGPLKAFNLVKDSATG-----LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTTC-----SEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEEcCCCcCCHHHHH---HHHHhcCCceEEEEEecCCCC-----CcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 5789999999999999986 999999999999999886432 35789999999999999999999999999999
Q ss_pred EEEEecC
Q 004082 190 LKACFGT 196 (775)
Q Consensus 190 LRASfGT 196 (775)
|+|.||+
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999985
No 140
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=1.7e-14 Score=143.19 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=74.6
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCc--ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYG--KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
....|||+||++.+++++|. ++|++|| +|++|.|.+++.+. .++|+|||+|.+.++|.+||+.|||..|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~---~~F~~~G~~~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHH---HHHHTTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHHCCcceEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 46789999999999999886 9999999 99999999987543 35789999999999999999999999999
Q ss_pred CeEEEEEecCCCcc
Q 004082 187 GKSLKACFGTTKYC 200 (775)
Q Consensus 187 GR~LRASfGTTKYC 200 (775)
||.|+|.|++.+..
T Consensus 139 Gr~l~V~~a~~~~~ 152 (229)
T 3q2s_C 139 GQNPVVTPVNKQFL 152 (229)
T ss_dssp TBCCEEEECCHHHH
T ss_pred CEEeEEEECCCCcc
Confidence 99999999977643
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.4e-14 Score=118.63 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=67.0
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
...+.|||+|| .+++++|. ++|++||+|..|.|.+ .+++|||+|.+.++|.+||..|||..++|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~---~~F~~~G~i~~v~i~~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLR---GAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHH---HHHTTTSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEcCC--CCCHHHHH---HHHhhCCCEEEEEecC-----------CCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34678999996 78888885 9999999999999852 35689999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 77 ~~l~v~~a~~~ 87 (97)
T 1x5p_A 77 VQLKVNIARKQ 87 (97)
T ss_dssp EEEEEECCSSC
T ss_pred eEEEEEECCCC
Confidence 99999999876
No 142
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=5.6e-14 Score=118.33 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=67.7
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++| +|..|.|.+ ++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~-~v~~~~i~~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVH---DLLKDY-DLKYCYVDR-----------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHH---HHTCSS-CCCCEEEEG-----------GGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHhhC-CeEEEEEeC-----------CCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 5679999999999999986 999999 999998841 3578999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+.++
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999886
No 143
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=5.6e-14 Score=135.21 Aligned_cols=79 Identities=16% Similarity=0.372 Sum_probs=72.1
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||.|..|.|.++..+ ++|+|||+|.+.++|.+||+.|||..|+||.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~d~~~-------~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cccceECCcccccHHHHHH---HHHhhcCCeEEEEeeccCCC-------CceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 4679999999999999885 99999999999999987643 3789999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..|
T Consensus 173 i~V~~a~~~ 181 (213)
T 4f02_A 173 VFVGRFKSR 181 (213)
T ss_dssp CEEEECCCH
T ss_pred EEEEEcCCC
Confidence 999998765
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=3.9e-14 Score=119.97 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=67.6
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||.|..| ... + ..+|+|||+|.+.++|.+||..|||..++|+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~---~~F~~~g~v~~~---~~~-~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELK---EVFEDALEIRLV---SQD-G------KSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHH---HHHCSEEEECCE---EET-T------EEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHhhCCcEEEe---CCC-C------CcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46789999999999999986 899999999776 221 1 2478999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 82 ~l~v~~a~~~ 91 (96)
T 1fjc_A 82 SVSLYYTGEK 91 (96)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 145
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.4e-14 Score=123.10 Aligned_cols=82 Identities=16% Similarity=0.319 Sum_probs=71.6
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.......|||+|||+.++++||. ++|++|| |++|.|.+++.+ .++|+|||+|.+.++|.+||+ +||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G-~~~v~i~~d~~g------~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIY---NFFSPLN-PMRVHIEIGPDG------RVTGEADVEFATHEDAVAAMA-KDKANM 79 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHH---HSSCSCC-CSEEEEEESSSS------CEEEEEEEECSSSHHHHHHHT-TSSCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHHHcC-ceEEEEEECCCC------CEeeEEEEEECCHHHHHHHHH-hCCCeE
Confidence 34557889999999999999986 9999999 559999988633 357899999999999999995 799999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+||.|+|..+++.
T Consensus 80 ~gr~i~V~~~~~~ 92 (102)
T 1wez_A 80 QHRYVELFLNSTA 92 (102)
T ss_dssp SSSCCEEEEECCC
T ss_pred CCcEEEEEECCCC
Confidence 9999999988765
No 146
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=6.3e-14 Score=135.54 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC--e
Q 004082 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG--K 188 (775)
Q Consensus 111 NLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG--R 188 (775)
.+|||+||++.+++++|. ++|++||+|.+|+|..+. ++|+|||+|.+.++|++||++|||..|.| +
T Consensus 47 l~l~VgNL~~~vted~L~---~~Fs~fG~V~~V~i~~k~---------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLH---QIFSKFGTVLKIITFTKN---------NQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCSCCCHHHHH---HHHHHHSCEEEEEEEESS---------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCCCCCHHHHH---HHHHhcCCEEEEEEEeCC---------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 468999999999998875 999999999999996432 36799999999999999999999999965 9
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|||.|+..+
T Consensus 115 ~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 TLRIDFSKLT 124 (164)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEEecCC
Confidence 9999999877
No 147
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-15 Score=131.64 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=72.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeE--------EEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK--------VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~K--------IvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD 181 (775)
.+.|||+|||+.+++++|. ++|++||+|.. |.|.+++.++ ..+++|||+|.+.++|.+||..||
T Consensus 7 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVA---DYFKQIGIIKTNKKTGQPMINLYTDRETG-----KLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 5679999999999999986 99999999998 8888775432 357899999999999999999999
Q ss_pred CCccCCeEEEEEecCCC
Q 004082 182 GFVLEGKSLKACFGTTK 198 (775)
Q Consensus 182 Gs~LdGR~LRASfGTTK 198 (775)
|..++|+.|+|.|+..+
T Consensus 79 g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 79 GKEFSGNPIKVSFATRR 95 (116)
Confidence 99999999999999877
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=1.6e-13 Score=127.12 Aligned_cols=116 Identities=15% Similarity=0.236 Sum_probs=88.3
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.++..++ .++|+|||+|.+.++|.+||.. +|..++|+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLR---SHFEQWGTLTDCVVMRDPNTK-----RSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEEcCCCC-----CccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 35689999999999999986 999999999999999886543 3578999999999999999987 99999999
Q ss_pred EEEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 189 ~LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
.|+|.++..+--. .+........++|+.-+.. ..|.++|......
T Consensus 83 ~l~v~~~~~~~~~--~~~~~~~~~~~l~V~nLp~---~~t~~~l~~~F~~ 127 (196)
T 1l3k_A 83 VVEPKRAVSREDS--QRPGAHLTVKKIFVGGIKE---DTEEHHLRDYFEQ 127 (196)
T ss_dssp ECEEEECCC-------------CCSEEEEECCTT---TCCHHHHHHHHTT
T ss_pred EeeeecccCcccc--cccccCCCcceEEEeCCCC---CCCHHHHHHHHhc
Confidence 9999998776321 1222223346677776653 4788888875543
No 149
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=6.1e-14 Score=134.32 Aligned_cols=87 Identities=14% Similarity=0.352 Sum_probs=77.1
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+++|||+|.+.++|.+||+.|||..|+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~g------~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVDYDRSG------RSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHH---HHHHHTSCCSEEEECCCTTS------SCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC------CEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 345799999999999999986 99999999999999987632 357899999999999999999999999999
Q ss_pred eEEEEEecCCCccccc
Q 004082 188 KSLKACFGTTKYCHAW 203 (775)
Q Consensus 188 R~LRASfGTTKYCssF 203 (775)
+.|+|.|+.+.....+
T Consensus 157 r~l~V~~a~~~~~~~~ 172 (177)
T 2f3j_A 157 RPMDIQLVASQIDLEH 172 (177)
T ss_dssp SBCEEEEESSGGGGCC
T ss_pred EEEEEEEecCCCCCCC
Confidence 9999999998765543
No 150
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=3.5e-14 Score=131.91 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=73.0
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcc---eeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGK---VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGK---I~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
-....|||+|||+.+++++|. ++|++||. |..|.|.+++.+ .++|+|||+|.+.++|.+||+ +||..
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~---~~F~~~G~v~~v~~v~i~~d~~g------~srG~aFV~F~~~e~a~~Al~-~~g~~ 111 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQ---NFLSDCTIHDGAAGVHFIYTREG------RQSGEAFVELGSEDDVKMALK-KDRES 111 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHH---HHTTTCCCSSSSTTEEEEECSSS------CEEEEEEEECSSHHHHHHHHT-TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHHhCCcCceeEEEEEECCCC------CCCeEEEEEECCHHHHHHHHh-cCCCE
Confidence 346789999999999999986 99999999 899999988753 357899999999999999999 99999
Q ss_pred cCCeEEEEEecCCC
Q 004082 185 LEGKSLKACFGTTK 198 (775)
Q Consensus 185 LdGR~LRASfGTTK 198 (775)
|+||.|+|.+++.+
T Consensus 112 l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 112 MGHRYIEVFKSHRT 125 (136)
T ss_dssp SSSSEEEEEECCHH
T ss_pred ECCEEEEEEECChH
Confidence 99999999998755
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=125.37 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=72.0
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcc---eeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGK---VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGK---I~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
....|||+|||+.+++++|. ++|++||. |..|.|.+++.+ .++|+|||+|.+.++|.+||. +||..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~---~~F~~~g~~~~v~~v~i~~~~~g------~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVL---NFFSDCRIRNGENGIHFLLNRDG------KRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHH---HHTTTSCBTTTTTTEECCCCTTS------TTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHhcCCcCCcceEEEEECCCC------CEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 46789999999999999986 89999998 899999887653 357899999999999999999 999999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+||.|+|.+++.+
T Consensus 80 ~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 80 GQRYVEVYEINNE 92 (107)
T ss_dssp SSSCCCCEECCHH
T ss_pred CCeEEEEEECCHH
Confidence 9999999998765
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=5.7e-14 Score=122.51 Aligned_cols=73 Identities=25% Similarity=0.407 Sum_probs=66.7
Q ss_pred cCEEEEeCCCCC-CChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 110 RNLVYIVGLPLN-LGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 110 rNLVYVvGLp~~-iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
...|||+|||+. +++++|. ++|++||+|..|.|. +++|||+|.+.++|.+||+.|||..++|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVE---TIFSKYGRVAGCSVH-------------KGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHH---HHHGGGSCCSEEEEE-------------TTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEeCCCcccCCHHHHH---HHHHhCCCeEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 368999999999 9998886 999999999999982 35899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 004082 189 SLKACFGTTK 198 (775)
Q Consensus 189 ~LRASfGTTK 198 (775)
.|+|.|+..+
T Consensus 91 ~l~V~~a~~~ 100 (110)
T 1wf1_A 91 TLDINMAGEP 100 (110)
T ss_dssp ECCEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999999753
No 153
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.46 E-value=5.9e-14 Score=126.93 Aligned_cols=80 Identities=11% Similarity=0.267 Sum_probs=72.6
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||.|..|.|.++..++ .++|+|||+|.+.++|.+|++ ++|..++||.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFE---EFFSQWGTIIDAQLMLDKDTG-----QSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHH---HHHHTTSCCSEEECCCSSSSS-----TTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred CCeEEECCCCCCCCHHHHH---HHHHhCccEEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 4689999999999999986 999999999999999876432 467899999999999999998 8999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..|
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999876
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.5e-13 Score=132.33 Aligned_cols=112 Identities=13% Similarity=0.300 Sum_probs=87.8
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
...+|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+.+||..+.||
T Consensus 14 p~~tlfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLY---EKFSPAGPILSIRVCRDMITR-----RSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhhCCEEEEEEecccCCC-----CccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 34689999999999999886 999999999999999987643 3578999999999999999999999999999
Q ss_pred EEEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhc
Q 004082 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237 (775)
Q Consensus 189 ~LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~ 237 (775)
.|++.++..+..... .....+|+.-+. ...|.+||.....
T Consensus 86 ~i~~~~~~~~~~~~~------~~~~~l~v~nl~---~~~t~~~l~~~F~ 125 (213)
T 4f02_A 86 PVRIMWSQRDPSLRK------SGVGNIFIKNLD---KSIDNKALYDTFS 125 (213)
T ss_dssp ECEEEECCCCTHHHH------HCTTEEEEESCC---TTCCHHHHHHHHG
T ss_pred ccccccccccccccc------cccccceECCcc---cccHHHHHHHHHh
Confidence 999999876543221 112335554443 2467788776543
No 155
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.2e-13 Score=134.55 Aligned_cols=77 Identities=16% Similarity=0.342 Sum_probs=69.3
Q ss_pred ccCEEEEeCCC-CCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 109 QRNLVYIVGLP-LNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 109 QrNLVYVvGLp-~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
+...|||+||| +.+++++|. ++|++||.|.+|.|.++. +|+|||+|.+.++|.+||+.|||..++|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~---~~F~~~G~v~~v~i~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVF---NVFCLYGNVEKVKFMKSK----------PGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHH---HHHTTTSCEEEEEECTTS----------TTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCeEEEEEecCC----------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999 799888875 999999999999997642 4689999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.|+..+
T Consensus 70 ~~l~v~~s~~~ 80 (205)
T 3tyt_A 70 QKMNVCVSKQP 80 (205)
T ss_dssp EECEEEECSCS
T ss_pred ceEEEEEccCC
Confidence 99999998765
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=117.76 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=65.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..| ..++.+ .+ +|||+|.+.++|.+||. |||..++||.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~v--~~~~~~-------g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLS---EYFLAFGPVASV--VMDKDK-------GV-FAIVEMGDVGAREAVLS-QSQHSLGGHR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHGGGTSCEEEE--EECSSS-------CC-EEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhcCCeEEE--EEcCCC-------Cc-EEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence 4689999999999999986 899999999998 333322 12 89999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.++..+
T Consensus 74 l~V~~a~~~ 82 (94)
T 2e5g_A 74 LRVRPREQK 82 (94)
T ss_dssp CCCBCSCCS
T ss_pred EEEEECCcC
Confidence 999988765
No 157
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.46 E-value=4.2e-14 Score=121.24 Aligned_cols=78 Identities=17% Similarity=0.371 Sum_probs=70.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||.|..|.|.++. ++ ..+|+|||+|.+.++|.+||+ +|..++|+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~-~g-----~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~ 77 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIR---SFFARYGSVKEVKIITDR-TG-----VSKGYGFVSFYNDVDVQKIVE--SQINFHGKK 77 (102)
T ss_dssp EEEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECT-TS-----CEEEEEEEEESSCCCHHHHTT--CCCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEEECC-CC-----CccceEEEEECCHHHHHHHHh--CCCeECCEE
Confidence 4689999999999999986 899999999999999886 32 357899999999999999999 999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.++..|
T Consensus 78 l~v~~a~~~ 86 (102)
T 2xs2_A 78 LKLGPAIRK 86 (102)
T ss_dssp CEEEEEEEC
T ss_pred EEEEECCcC
Confidence 999999876
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.1e-13 Score=128.31 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=75.0
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||.|..|.|.++..++ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVK---ELLTSFGPLKAFNLVKDSATG-----LSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHH---HHHHTBSCEEEEEEEECTTTC-----SEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHHcCCccEEEEeecCCCC-----CcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456899999999999999986 999999999999999886432 357899999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.|+..+
T Consensus 184 ~~l~v~~a~~~ 194 (198)
T 2yh0_A 184 KKLLVQRASVG 194 (198)
T ss_dssp EECEEEESCCC
T ss_pred EEEEEEECCCC
Confidence 99999999876
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=8.8e-14 Score=126.44 Aligned_cols=79 Identities=22% Similarity=0.429 Sum_probs=68.3
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEE--------EEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHh
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV--------SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 180 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KI--------vI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaL 180 (775)
..+.|||+|||+.+++++|. ++|++||.|..+ .+..+ + ..+|+|||+|.+.++|.+||..|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~~~~~~~~di~~~~~--g------~~~g~afV~f~~~~~A~~Ai~~l 112 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLK---YIFGRYVDFSSETQRIMFDIRLMKE--G------RMKGQAFIGLPNEKAAAKALKEA 112 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHH---HHHGGGCCTTCHHHHHHCEEEEEEE--T------TTEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCcccccccceeeEEeccC--C------CcccEEEEEeCCHHHHHHHHHHh
Confidence 45789999999999999986 899999999763 33332 1 35789999999999999999999
Q ss_pred cCCccCCeEEEEEecCCC
Q 004082 181 HGFVLEGKSLKACFGTTK 198 (775)
Q Consensus 181 DGs~LdGR~LRASfGTTK 198 (775)
||..++||.|+|.|+.++
T Consensus 113 ng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 113 NGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp TTBEETTEECEEEECCCS
T ss_pred CCCEeCCcEEEEEECCCC
Confidence 999999999999999765
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.45 E-value=2.4e-13 Score=122.72 Aligned_cols=80 Identities=25% Similarity=0.505 Sum_probs=71.7
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||..+++++|. ++|++||.|..|.|.++..++ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLD---TIFGKYGSIVQKNILRDKLTG-----RPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHH---HHHTSSSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHH---HhhhcCCcEEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 456889999999999999986 999999999999999876432 357899999999999999999999999988
Q ss_pred --eEEEEEec
Q 004082 188 --KSLKACFG 195 (775)
Q Consensus 188 --R~LRASfG 195 (775)
++|+|.||
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999986
No 161
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=122.07 Aligned_cols=78 Identities=13% Similarity=0.302 Sum_probs=69.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.++++||. ++|++| +|..|.|.+++.+ .++|+|||+|.+.++|.+|| .+||..|+||.
T Consensus 16 ~~~v~V~nLp~~~te~dl~---~~F~~~-~v~~v~i~~d~~g------~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVR---DFFHGL-RVDAVHLLKDHVG------RNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHH---HHTTTS-CCCEEEECCCTTC------CCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHhccC-CeeEEEEEECCCC------CCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 3579999999999999996 999999 8999999988653 35789999999999999999 79999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|..++.+
T Consensus 85 i~V~~a~~~ 93 (109)
T 2dnn_A 85 VEVSPATER 93 (109)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCcc
Confidence 999887643
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.45 E-value=2e-13 Score=128.27 Aligned_cols=118 Identities=16% Similarity=0.319 Sum_probs=88.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|.+|.|.++..++ ..+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIR---QAFAPFGPIKSIDMSWDSVTM-----KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEECCC-CC------CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhCCCEEEEEEeecCCCC-----ccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 4579999999999999986 999999999999998876432 35789999999999999999999999999999
Q ss_pred EEEEecCCCcccc-ccC--CCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 190 LKACFGTTKYCHA-WLR--NVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 190 LRASfGTTKYCss-FLR--~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
|+|.++..+--.. ... ........++|+.-+.. ..|.+||......
T Consensus 100 l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~---~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ---DLSDDDIKSVFEA 148 (216)
T ss_dssp CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCT---TCCHHHHHHHHTT
T ss_pred EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCC---cCCHHHHHHHHhc
Confidence 9999877653110 000 00112345677766653 3788888775543
No 163
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.44 E-value=2.7e-13 Score=122.85 Aligned_cols=80 Identities=14% Similarity=0.299 Sum_probs=70.8
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
......|||+|||+.+++++|. ++|++||.|..|.|.++..+ .++|+|||+|.+.++|.+||+.|||..+.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~v~~~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIR---VMFSSFGQIEECRILRGPDG------LSRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTS------CEEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred cCCCCeEEEcCCCCcCCHHHHH---HHHHhCCCEEEEEEEECCCC------CEEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 3456789999999999999986 99999999999999987643 35789999999999999999999998775
Q ss_pred ---CeEEEEEec
Q 004082 187 ---GKSLKACFG 195 (775)
Q Consensus 187 ---GR~LRASfG 195 (775)
||+|+|.||
T Consensus 163 ~g~~~~l~V~~a 174 (175)
T 3nmr_A 163 EGCSSPMVVKFA 174 (175)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCCCCeEEEec
Confidence 499999997
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=3.3e-13 Score=121.02 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=70.7
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|||+.+++++|. ++|++||.|..|.|.++..++ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELE---QLFSQYGRIITSRILVDQVTG-----VSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCcEEECCCCCcCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----CccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 346789999999999999886 899999999999999876432 357899999999999999999999999999
Q ss_pred eE--EEEEec
Q 004082 188 KS--LKACFG 195 (775)
Q Consensus 188 R~--LRASfG 195 (775)
+. |+|.||
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 75 899886
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.43 E-value=1.9e-13 Score=121.36 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=63.8
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
..+.|||+|||+.+++++|. ++|++||+|..|.|.++ ++|||+|.+.++|.+||+.|||..|+|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLK---DHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHH---HHHGGGSCEEEEEECTT------------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEecC------------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35789999999999999986 89999999999998753 5899999999999999999999999999
Q ss_pred E-----EEEEecCC
Q 004082 189 S-----LKACFGTT 197 (775)
Q Consensus 189 ~-----LRASfGTT 197 (775)
. |++.....
T Consensus 80 ~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 80 EGETAYIRVKVDGP 93 (115)
T ss_dssp TSCCCBCEEEECC-
T ss_pred EeeeEEEEeccCCC
Confidence 9 55555443
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.42 E-value=3.7e-13 Score=124.68 Aligned_cols=80 Identities=14% Similarity=0.316 Sum_probs=70.8
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||.|..|.|.++..++ .++|+|||+|.+.++|.+||.. +|..++|+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~ 174 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLR---DYFEQYGKIEVIEIMTDRGSG-----KKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHN 174 (196)
T ss_dssp CSEEEEECCTTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHC-SCCEETTEE
T ss_pred cceEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEeecCCCC-----CccceEEEEECCHHHHHHHHHh-CCcEECCEE
Confidence 4789999999999999986 999999999999999886442 3578999999999999999987 899999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.|+..|
T Consensus 175 i~v~~a~~k 183 (196)
T 1l3k_A 175 CEVRKALSK 183 (196)
T ss_dssp CEEEECC--
T ss_pred EEEEecCCh
Confidence 999999887
No 167
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=6.8e-13 Score=117.90 Aligned_cols=81 Identities=19% Similarity=0.375 Sum_probs=67.3
Q ss_pred cCEEEEeCCCC--CC---ChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 110 RNLVYIVGLPL--NL---GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 110 rNLVYVvGLp~--~i---aeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
...|||.||.. .+ .+++|. +.|++||+|.+|.|.+++.+. ..++|+|||+|.+.++|.+||++|||..
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~---~~f~~~G~V~~v~i~~~~~~~----~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETK---EECEKYGKVGKCVIFEIPGAP----DDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHH---HHGGGGSCEEEEEEEECSSCC----TTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHH---HHHHhcCCEEEEEEecCCCCC----CCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 46789999863 22 345664 899999999999999875421 1357899999999999999999999999
Q ss_pred cCCeEEEEEecCC
Q 004082 185 LEGKSLKACFGTT 197 (775)
Q Consensus 185 LdGR~LRASfGTT 197 (775)
++||.|+|.|+..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999875
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=4.1e-13 Score=114.72 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=62.0
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc-
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL- 185 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L- 185 (775)
....++|||+|||+.+++++|. ++|++||+|.+|.|.++ ++|+|||+|.+.++|. .++|..+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~---~~F~~~G~i~~v~i~~~----------srGfaFV~F~~~~~A~----~~~~~~~~ 70 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQ---QFFCQYGEVVDVFIPKP----------FRAFAFVTFADDKVAQ----SLCGEDLI 70 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEECCSS----------CCSEEEEEESCHHHHH----HHTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhccCCEEEEEEeeC----------CCCEEEEEECCHHHHH----HHcCCCcc
Confidence 4557899999999999999885 99999999999999864 3679999999999998 3677764
Q ss_pred -CCeEEEEEecCCC
Q 004082 186 -EGKSLKACFGTTK 198 (775)
Q Consensus 186 -dGR~LRASfGTTK 198 (775)
.|+.|+|.++..|
T Consensus 71 ~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 71 IKGISVHISNAEPK 84 (89)
T ss_dssp ETTEEEEEEECC--
T ss_pred cCCEEEEEEEcCCC
Confidence 5999999999876
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=124.56 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=66.3
Q ss_pred cCEEEE--eCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc--
Q 004082 110 RNLVYI--VGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL-- 185 (775)
Q Consensus 110 rNLVYV--vGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L-- 185 (775)
.+.||| +||++.+++++|. ++|++||+|..|+|.. .+++|||+|.+.++|.+||++|||..+
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~---~~F~~fG~v~~v~i~~-----------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLL---PVLEKCGLVDALLMPP-----------NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHH---HHHHHHSCEEEEECCT-----------TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCCCCCCCHHHHH---HHHHhcCCeEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 467999 8899999998885 9999999999998853 246899999999999999999999988
Q ss_pred ---CCeEEEEEecCCC
Q 004082 186 ---EGKSLKACFGTTK 198 (775)
Q Consensus 186 ---dGR~LRASfGTTK 198 (775)
.|++|.|.|+...
T Consensus 91 ~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKV 106 (114)
T ss_dssp TTSCEEECEEEEESCC
T ss_pred ccCCCcEEEEEecccC
Confidence 7999999998654
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=4.6e-13 Score=110.96 Aligned_cols=70 Identities=20% Similarity=0.557 Sum_probs=63.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCC----c-------ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHH
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQY----G-------KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQY----G-------KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAI 177 (775)
+...|||+|||+.+++++|. ++|++| | +|.+|.+.++ +++|||+|.+.++|.+||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~---~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQD-----------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHHHHHHHTTCCSSSSCSEEEEEECSS-----------SSEEEEEESSHHHHHHHG
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHHhhhcccccCCCCcceEEEecCC-----------CcEEEEEcCCHHHHHHHH
Confidence 35789999999999999986 899999 8 9999988753 468999999999999999
Q ss_pred HHhcCCccCCeEEEEE
Q 004082 178 QSVHGFVLEGKSLKAC 193 (775)
Q Consensus 178 qaLDGs~LdGR~LRAS 193 (775)
.|||..++||.|+|.
T Consensus 71 -~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 71 -AFDGIIFQGQSLKIR 85 (87)
T ss_dssp -GGTTCEETTEECEEE
T ss_pred -hcCCCEECCeEEEEe
Confidence 999999999999987
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.39 E-value=1e-12 Score=129.74 Aligned_cols=84 Identities=19% Similarity=0.423 Sum_probs=72.6
Q ss_pred ccccCEEEEeCCCCCCChHHHHH-HHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQ-RREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr-~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.-..+.|||+|||+.+++++|.+ =+++|++||+|.+|.|.++. ..+|+|||+|.+.++|.+||+.|||..+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~--------~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL--------KMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC--------CcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 34578899999999999998621 15899999999999998632 2468999999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+||.|+|.|+..+
T Consensus 78 ~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 78 YDKPMRIQYAKTD 90 (282)
T ss_pred CCcEEEEEEeccC
Confidence 9999999999665
No 172
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.39 E-value=8.9e-13 Score=120.72 Aligned_cols=78 Identities=19% Similarity=0.360 Sum_probs=68.3
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
...+.|||+|||+.+++++|. ++|++||.|..+ ...+ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~---~~F~~~g~v~~~----~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELK---EVFEDALEIRLV----SQDG------KSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHH---HHCTTCSEEEEE----CSSS------SCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred ccCCEEEEeCCCCCCCHHHHH---HHHHhcCeEEEe----cCCC------CCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346789999999999999986 999999999776 2111 357899999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|.|+..|
T Consensus 164 ~~i~v~~a~~k 174 (175)
T 1fje_B 164 RSVSLYYTGEK 174 (175)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEecCCC
Confidence 99999999876
No 173
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=125.36 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=68.4
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcce----eEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKV----LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI----~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
...|||+|||+.++++||. ++|++||+| ..|.|.++..+ .++|+|||+|.+.++|.+||+. ||..|
T Consensus 23 ~~~v~V~nLp~~~te~dl~---~~F~~~g~v~g~v~~v~i~~d~~g------r~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVV---AFFGQHCPITGGKEGILFVTYPDG------RPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CCEEEECSCCTTCCHHHHH---HHHHTTSCCTTGGGGEEEEECTTS------CEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhhCCccCCcceEEEEECCCC------CEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 4689999999999999996 999999986 68999887533 3579999999999999999996 99999
Q ss_pred CCeEEEEEecCC
Q 004082 186 EGKSLKACFGTT 197 (775)
Q Consensus 186 dGR~LRASfGTT 197 (775)
+||.|+|..++.
T Consensus 93 ~gR~i~V~~a~~ 104 (123)
T 2dha_A 93 GKRYIELFRSTA 104 (123)
T ss_dssp SSCEECCEEECH
T ss_pred CCeEEEEEECCH
Confidence 999999987643
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.38 E-value=7e-13 Score=119.70 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=66.8
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
.....|||+|| .+++++|. ++|++||+|..|.|.+ .+++|||+|.+.++|.+||..|||..++|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~---~~F~~~G~I~~v~i~~-----------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLR---GAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHH---HHHSTTCCCSCEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEcCC--CCCHHHHH---HHHHccCCEEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34678999996 58888885 9999999999999852 35789999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
+.|+|.|+..+
T Consensus 101 ~~l~V~~a~~~ 111 (121)
T 2bz2_A 101 VQLKVNIARKQ 111 (121)
T ss_dssp CBCEEEECCSS
T ss_pred eEEEEEEeCCC
Confidence 99999999877
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.38 E-value=1.1e-12 Score=129.63 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=73.6
Q ss_pred cccCEEEEeCCCCCC-ChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 108 IQRNLVYIVGLPLNL-GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 108 IQrNLVYVvGLp~~i-aeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
...+.|||+|||+.+ ++++|. ++|++||.|..|.|.++..+ .++|+|||+|.+.++|.+||..|||..++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALC---RALSAVHSPTFCQLACGQDG------QLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHH---HHTCSSSCCSEEEEEECSSC------CEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCccEEEEecCCcccCCHHHHH---HHhhCCCCeEEEEEEECCCC------CcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 457889999999997 667775 99999999999999987643 35789999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
||.|+|.|+..+
T Consensus 253 g~~l~v~~a~~~ 264 (284)
T 3smz_A 253 GSHLRVSFCAPG 264 (284)
T ss_dssp TEECEEEECCSS
T ss_pred CeEEEEEEecCC
Confidence 999999999877
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=1.8e-13 Score=127.82 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=70.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.++++||. ++|++|| |++|.|.+++.+ .++|+|||+|.+.++|++|| .+||..|+||.
T Consensus 46 ~~~lfV~nLp~~~te~dL~---~~F~~~G-i~~v~i~~d~~g------~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIY---NFFSPLN-PVRVHIEIGPDG------RVTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp CCCEECCSCCTTCCHHHHH---HHHCSCC-CSEEECCCSSSS------CSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcC-CeEEEEEECCCC------CCceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 4679999999999999986 9999999 779999988653 35789999999999999999 89999999999
Q ss_pred EEEEecCCC
Q 004082 190 LKACFGTTK 198 (775)
Q Consensus 190 LRASfGTTK 198 (775)
|+|.+++.+
T Consensus 115 i~V~~a~~~ 123 (139)
T 2hgn_A 115 IELFLNSTT 123 (139)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999988765
No 177
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=3.8e-13 Score=124.02 Aligned_cols=80 Identities=14% Similarity=0.375 Sum_probs=69.9
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCccee--EEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL--KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~--KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.+...|||+|||+.+++++|. ++|++| .|+ .|.|.+++.+ .++|+|||+|.++++|.+||+. +|..|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~---~~F~~~-~i~~~~v~i~~d~~G------rsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIV---QFFSGL-EIVPNGITLPVDPEG------KITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHH---HHTTTS-CEEEEEEECCCCSSS------SSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHhcC-CceeeEEEEEECCCC------CCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 346789999999999999986 999999 677 8999888653 3578999999999999999985 88999
Q ss_pred CCeEEEEEecCCC
Q 004082 186 EGKSLKACFGTTK 198 (775)
Q Consensus 186 dGR~LRASfGTTK 198 (775)
+||.|+|..++.+
T Consensus 109 ~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 109 GHRYIEVFKSSQE 121 (126)
T ss_dssp TTBCCCCEEECHH
T ss_pred CCEEEEEEECCHH
Confidence 9999999988654
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.35 E-value=6.4e-13 Score=124.54 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=70.0
Q ss_pred cCEEEEeCCCC-CCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 110 RNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 110 rNLVYVvGLp~-~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
.+.|||+|||+ .+++++|. ++|++||+|.+|.|.+++ +|+|||+|.+.++|.+||..|||..++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~---~~F~~~G~i~~v~i~~~~----------~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLF---ILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHH---HHHHTTCCCSEEECSTTC----------SSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CcEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 57899999999 99998886 999999999999998753 45799999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 004082 189 SLKACFGTTKY 199 (775)
Q Consensus 189 ~LRASfGTTKY 199 (775)
.|+|.|+..+.
T Consensus 70 ~l~v~~a~~~~ 80 (198)
T 1qm9_A 70 PIRITLSKHQN 80 (198)
T ss_dssp CCEEEECCCCS
T ss_pred EEEEEEecCCC
Confidence 99999988763
No 179
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=9.8e-13 Score=116.09 Aligned_cols=80 Identities=16% Similarity=0.341 Sum_probs=64.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|. +.+.++..+. ....++|+|||+|.+.++|.+||++|++ ++|+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~---~~F~~~G~i~-~~~~~~~~~~--~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~ 79 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEIT---ASFRRFGPLV-VDWPHKAESK--SYFPPKGYAFLLFQEESSVQALIDACLE--EDGKL 79 (114)
T ss_dssp CCCEEEECCCTTCCHHHHH---HHTTTTCCCC-EECTTSSSSC--CCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEE
T ss_pred CCEEEEcCCCCCCCHHHHH---HHHHhcCCEE-EEEeecCCCC--CCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcE
Confidence 4679999999999999986 9999999999 7777665431 0013578999999999999999999964 88888
Q ss_pred EEEEecCC
Q 004082 190 LKACFGTT 197 (775)
Q Consensus 190 LRASfGTT 197 (775)
|.+....+
T Consensus 80 ~~~~~~~~ 87 (114)
T 2dnl_A 80 YLCVSSPT 87 (114)
T ss_dssp EEEECCSS
T ss_pred EEeccCCC
Confidence 88875543
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.35 E-value=1.1e-12 Score=130.13 Aligned_cols=83 Identities=17% Similarity=0.394 Sum_probs=73.1
Q ss_pred cccCEEEEeCCCCC-CChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 108 IQRNLVYIVGLPLN-LGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 108 IQrNLVYVvGLp~~-iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.....|||+|||+. +++++|. ++|++||.|..|.|.++... +..++|+|||+|.+.++|.+|| .|||..++
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~----tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLR---ESFEGFGSIEKINIPAGQKE----HSFNNCCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHH---HHHGGGSCEEEEECCSCCC-------CCCEEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred CCCceEEEECCCcccCCHHHHH---HHHhccCCeeEEEEEecCCc----CCCCceEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 45688999999999 9988886 99999999999999887540 0136789999999999999999 99999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
||.|+|.|+..|
T Consensus 280 g~~i~V~~a~~k 291 (292)
T 2ghp_A 280 NREISVSLADKK 291 (292)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEEecCC
Confidence 999999999876
No 181
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.34 E-value=1.9e-12 Score=117.41 Aligned_cols=73 Identities=18% Similarity=0.350 Sum_probs=65.0
Q ss_pred HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEEecC-CCccccccCCCCC
Q 004082 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGT-TKYCHAWLRNVPC 209 (775)
Q Consensus 131 ~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LRASfGT-TKYCssFLR~~~C 209 (775)
.+.|++||+|.+|+|.++. .+|+|||+|.+.++|.+||++|||..++||.|+|.|.. ++|+..|.....|
T Consensus 35 ~~~f~kfG~V~~v~i~~~~---------~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~a~~~ 105 (114)
T 3s6e_A 35 IEECNKHGGVIHIYVDKNS---------AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTA 105 (114)
T ss_dssp HHHHTTTTCCSEEEECTTC---------TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGGGSSC
T ss_pred HHHHhccCCEEEEEEecCC---------CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCcccccc
Confidence 5899999999999997652 36789999999999999999999999999999999985 4799999998877
Q ss_pred CCC
Q 004082 210 TNP 212 (775)
Q Consensus 210 ~Np 212 (775)
+-+
T Consensus 106 ~~~ 108 (114)
T 3s6e_A 106 TQL 108 (114)
T ss_dssp CSC
T ss_pred Ccc
Confidence 653
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=2e-12 Score=127.78 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=68.5
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC-C
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE-G 187 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld-G 187 (775)
..+.|||+|||..+++++|. ++|++||.|.+|.|.+++ +|+|||+|.+.++|.+||+.|||..++ |
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~---~~F~~~G~i~~v~~~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLS---MLFNQFPGFKEVRLVPGR----------HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHhcCCeEEEEEecCC----------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 46789999999999999886 999999999999998542 468999999999999999999999999 9
Q ss_pred eEEEEEecC
Q 004082 188 KSLKACFGT 196 (775)
Q Consensus 188 R~LRASfGT 196 (775)
+.|+|+|+.
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 999999985
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.9e-13 Score=111.58 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=63.2
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc--cC
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV--LE 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~--Ld 186 (775)
+.+.|||+|||+.+++++|. ++|++||+|..|.|.++ ++++|||+|.+.++|++| +|.. +.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~~----~~~~~~~~ 66 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELR---EFFSQYGDVMDVFIPKP----------FRAFAFVTFADDQIAQSL----CGEDLIIK 66 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHH---HHSTTTSCCCEEECCSS----------CCSCCEEECSCHHHHHHT----TTCEEEET
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCeeEEEEecC----------CCCEEEEEECCHHHHHHH----hcCCceeC
Confidence 45789999999999999986 89999999999999754 357899999999999754 5544 59
Q ss_pred CeEEEEEecCCCc
Q 004082 187 GKSLKACFGTTKY 199 (775)
Q Consensus 187 GR~LRASfGTTKY 199 (775)
|+.|+|.++..|-
T Consensus 67 g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 67 GISVHISNAEPKH 79 (88)
T ss_dssp TEEEEEECCCCCC
T ss_pred CEEEEEEecCCCC
Confidence 9999999998873
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.34 E-value=2.4e-12 Score=116.65 Aligned_cols=113 Identities=15% Similarity=0.317 Sum_probs=86.3
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC---
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE--- 186 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld--- 186 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .+..+|+|||+|.+.++|.+||+.|||..+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 76 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLR---ELFEQYGAVYEINVLRDRSQN---PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM 76 (175)
T ss_dssp CEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEEECSSS---SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred ceEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEecCCCC---CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCC
Confidence 3579999999999999986 999999999999999887542 1125789999999999999999999998876
Q ss_pred CeEEEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 187 GKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 187 GR~LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
++.|++.++..+.-. -....++|+--+. ...|.++|......
T Consensus 77 ~~~~~~~~~~~~~~~-------~~~~~~l~v~nl~---~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 77 HHPIQMKPADSEKNN-------AVEDRKLFIGMIS---KKCTENDIRVMFSS 118 (175)
T ss_dssp SSCCEEEECGGGCCS-------CGGGSEEEEESCC---TTCCHHHHHHHHGG
T ss_pred ccceEEccccccccc-------cCCCCeEEEcCCC---CcCCHHHHHHHHHh
Confidence 688999887755321 1122345554443 34788888775543
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=1.7e-12 Score=125.68 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=70.1
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.++...|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+|+|||+|.+.++|.+||..++ ..++
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~------~~kG~aFVeF~~~e~A~~A~~~~~-~~~~ 175 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIK---EWLEDKGQVLNIQMRRTLHK------AFKGSIFVVFDSIESAKKFVETPG-QKYK 175 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHH---HHHTTSCCEEEEEEEECTTC------CEEEEEEEEESSHHHHHHHHHCTT-CEET
T ss_pred ccccCEEEecCCCCcCCHHHHH---HHHhcCCCEEEEEEEECCCC------CcccEEEEEECCHHHHHHHHHhCC-CeEC
Confidence 3456889999999999998886 99999999999999987643 357899999999999999998665 5999
Q ss_pred CeEEEEEecCC
Q 004082 187 GKSLKACFGTT 197 (775)
Q Consensus 187 GR~LRASfGTT 197 (775)
||.|+|.++..
T Consensus 176 Gr~l~V~~~~~ 186 (193)
T 2voo_A 176 ETDLLILFKDD 186 (193)
T ss_dssp TEECEEEETTT
T ss_pred CEEEEEEEhHH
Confidence 99999998653
No 186
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.33 E-value=2.3e-12 Score=114.35 Aligned_cols=64 Identities=14% Similarity=0.328 Sum_probs=56.1
Q ss_pred HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEEecCC
Q 004082 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTT 197 (775)
Q Consensus 131 ~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LRASfGTT 197 (775)
.+.|++||+|.+|.|.+++.+. ...++|+|||+|.+.++|.+||++|||..++||+|+|.|...
T Consensus 33 ~~~f~k~G~V~~v~i~~~~~~~---~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 33 RDECSKYGLVKSIEIPRPVDGV---EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHTTSCEEEEECCCCBTTB---CCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHccCCEEEEEEeccCCCC---CcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4899999999999999876542 123578999999999999999999999999999999999754
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.33 E-value=1.9e-12 Score=125.91 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=71.8
Q ss_pred cccccCEEEEeCCCC-CCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 106 RVIQRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 106 RVIQrNLVYVvGLp~-~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
.--..+.|||+|||+ .+++++|. ++|++||+|.+|.|.++. +++|||+|.+.++|.+||+.|||..
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~---~~F~~~G~i~~v~i~~~~----------~g~afV~F~~~~~A~~Ai~~l~g~~ 96 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLF---ILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHK 96 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHH---HHHHHHTCEEEEEECCTT----------SCCEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCcccCCHHHHH---HHHHhCCCeEEEEEEECC----------CCEEEEEECCHHHHHHHHHHhCCCe
Confidence 344568999999999 99998886 899999999999998763 4579999999999999999999999
Q ss_pred cCCeEEEEEecCCC
Q 004082 185 LEGKSLKACFGTTK 198 (775)
Q Consensus 185 LdGR~LRASfGTTK 198 (775)
++|+.|+|.|+..+
T Consensus 97 ~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 97 LHGKPIRITLSKHQ 110 (229)
T ss_dssp CSSSBCEEECCSCC
T ss_pred ECCeEEEEEEecCc
Confidence 99999999998765
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.6e-12 Score=112.38 Aligned_cols=81 Identities=22% Similarity=0.323 Sum_probs=65.9
Q ss_pred cccccCEEEEeCCCCCCC-----------hHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHH
Q 004082 106 RVIQRNLVYIVGLPLNLG-----------DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAV 174 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~ia-----------eEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~ 174 (775)
+-.....|+|.||..... +++| .++|++||+|.+|.| .++. ++|+|||+|.+.++|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l---~~~f~~~G~v~~v~i-~~~~--------~~G~afV~f~~~~~A~ 78 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDL---RVECSKFGQIRKLLL-FDRH--------PDGVASVSFRDPEEAD 78 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHH---HHHGGGTSCCSEEEE-ETTC--------TTCEEEEECSCHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHH---HHHHHccCCEeEEEE-ecCC--------CCEEEEEEECCHHHHH
Confidence 344567899999944322 2445 389999999999977 4431 4689999999999999
Q ss_pred HHHHHhcCCccCCeEEEEEecCCC
Q 004082 175 RCIQSVHGFVLEGKSLKACFGTTK 198 (775)
Q Consensus 175 rAIqaLDGs~LdGR~LRASfGTTK 198 (775)
+||+.|||..++||.|+|.|+..+
T Consensus 79 ~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 79 YCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHcCCCEECCcEEEEEEeCCC
Confidence 999999999999999999998765
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=1.6e-12 Score=117.63 Aligned_cols=107 Identities=17% Similarity=0.369 Sum_probs=83.5
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeE
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 189 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~ 189 (775)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||+. +..++|+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLR---EYFGKYGTVTDLKIMKDPATG-----RSRGFGFLSFEKPSSVDEVVKT--QHILDGKV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHH---HHHTTTCCEEEEECCCCTTTS-----SCCSCEEEEESSTHHHHHHHHS--CCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEECCCCC-----CccceEEEEEccHHHHHHHHhc--ccccCCeE
Confidence 4689999999999999986 999999999999999886543 3578999999999999999994 67899999
Q ss_pred EEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhc
Q 004082 190 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237 (775)
Q Consensus 190 LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~ 237 (775)
|++.++..+--. ....++|+.-+. ...|.+||.....
T Consensus 73 i~v~~~~~~~~~--------~~~~~l~V~nlp---~~~t~~~l~~~F~ 109 (167)
T 2cjk_A 73 IDPKRAIPRDEQ--------DKTGKIFVGGIG---PDVRPKEFEEFFS 109 (167)
T ss_dssp CCCEECCCHHHH--------HHCEEEEEEEEC---TTCCHHHHHHHHH
T ss_pred cccccccchhhc--------cCCCeEEECCCC---CCCCHHHHHHHHH
Confidence 999988764211 112345554443 2468888876544
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=1.4e-12 Score=132.35 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=66.8
Q ss_pred cccCEEEEeCCCCCC---------ChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHH
Q 004082 108 IQRNLVYIVGLPLNL---------GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 178 (775)
Q Consensus 108 IQrNLVYVvGLp~~i---------aeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIq 178 (775)
.+..+|||+||+..+ ++++|. ++|++||+|.+|.|.+. +|+|||+|.+.++|+.||+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~---~~F~~fG~I~~v~v~~~-----------kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIR---FVFSRLGDIDRIRYVES-----------KNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHH---HHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHH---HHHHccCCEEEEEEECC-----------CCEEEEEeCCHHHHHHHHH
Confidence 356789999999998 455554 89999999999999852 4689999999999999999
Q ss_pred HhcCCcc------------CCeEEEEEecCCC
Q 004082 179 SVHGFVL------------EGKSLKACFGTTK 198 (775)
Q Consensus 179 aLDGs~L------------dGR~LRASfGTTK 198 (775)
+|||..| +|+.|+|.||+.+
T Consensus 198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 9999999 8999999999875
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=1.8e-12 Score=121.43 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=69.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCc-ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC-
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE- 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYG-KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld- 186 (775)
..+.|||+|||..+++++|. ++|++|| +|..|.|.++ .+|+|||+|.+.++|.+||+.|||..++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~---~~f~~~G~~v~~v~i~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 185 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLK---VLFSSNGGVVKGFKFFQK----------DRKMALIQMGSVEEAVQALIDLHNHDLGE 185 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHH---HHHHHTTSCCCEEEESST----------TSSCEEEECSSHHHHHHHHHHHTSSCCSS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHcCCCceEEEEEeC----------CCcEEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 36889999999999999886 9999999 9999999653 2468999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 004082 187 GKSLKACFGTTK 198 (775)
Q Consensus 187 GR~LRASfGTTK 198 (775)
|+.|+|.|++.+
T Consensus 186 g~~l~v~~a~~~ 197 (198)
T 1qm9_A 186 NHHLRVSFSKST 197 (198)
T ss_dssp CCSCCEEEECCC
T ss_pred CCeEEEEeeccc
Confidence 999999999864
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=5.1e-12 Score=124.95 Aligned_cols=114 Identities=16% Similarity=0.265 Sum_probs=90.7
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|++||.|..|.|.++..++ .++|+|||+|.+.++|.+||..|||..++|+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFE---ELVRPFGSLERCFLVYSERTG-----QSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCcCCHHHHH---HHHHhcCCeeEEEEEeeCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 35789999999999999886 999999999999998876442 3578999999999999999999999999999
Q ss_pred EEEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCc-cHHHHHhhhcc
Q 004082 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSF-TKDEIISAYTR 238 (775)
Q Consensus 189 ~LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~Dsf-TKeem~~~~~~ 238 (775)
.|+|.|+..+-= ...-....++|+.-+.. .+ |.++|......
T Consensus 166 ~i~v~~a~~~~~-----~~~~~~~~~l~v~nlp~---~~~~~~~l~~~f~~ 208 (284)
T 3smz_A 166 TLYVHWTDAGQL-----TPALLHSRCLCVDRLPP---GFNDVDALCRALSA 208 (284)
T ss_dssp ECEEEECCGGGC-----CTTTTSCSEEEEECCCT---TCCCHHHHHHHTCS
T ss_pred EEEEEECCCCCC-----CcccCCccEEEEecCCc---ccCCHHHHHHHhhC
Confidence 999999987621 11223345677766643 33 77888775543
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.31 E-value=4e-12 Score=126.13 Aligned_cols=101 Identities=20% Similarity=0.353 Sum_probs=83.7
Q ss_pred cccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 106 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 106 RVIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
...+.+.|||+|||+.+++++|. ++|++||+|..|.|.++ +|+|||+|.+.++|.+||..+||..+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~-----------kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFK---RLFERYGEPSEVFINRD-----------RGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHH---HHTGGGCCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 45667899999999999999986 89999999999999643 46899999999999999999999999
Q ss_pred CCeEEEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhc
Q 004082 186 EGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237 (775)
Q Consensus 186 dGR~LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~ 237 (775)
+|+.|+|.|+... .++|+.-+. ...|.++|.....
T Consensus 84 ~g~~l~v~~a~~~--------------~~l~v~nl~---~~~t~~~l~~~F~ 118 (261)
T 3sde_A 84 KSRPLRIRFATHG--------------AALTVKNLS---PVVSNELLEQAFS 118 (261)
T ss_dssp TTEECEEEECCCS--------------SEEEEESCC---TTCCHHHHHHHHG
T ss_pred CCceeEeeecccC--------------CcccccCCC---CCCCHHHHHHHHH
Confidence 9999999998753 245554443 2467788876544
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=5.4e-13 Score=117.98 Aligned_cols=76 Identities=17% Similarity=0.348 Sum_probs=61.9
Q ss_pred EEeCCCCCCChHHHHHH--------Hhhh-cCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 114 YIVGLPLNLGDEDLLQR--------REYF-GQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 114 YVvGLp~~iaeEDLLr~--------~EyF-GQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
++.||++.+++++|.+. .+.| ++||+|.+|.|.++..+ .++|+|||+|.+.++|.+||++|||..
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~------~~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD------HLVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS------SSEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCC------CccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 35677777777766311 2455 99999999999987543 368999999999999999999999999
Q ss_pred cCCeEEEEEec
Q 004082 185 LEGKSLKACFG 195 (775)
Q Consensus 185 LdGR~LRASfG 195 (775)
++||+|+|.|+
T Consensus 93 ~~Gr~i~v~~s 103 (104)
T 1jmt_A 93 FNGQPIHAELS 103 (104)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEEc
Confidence 99999999986
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.30 E-value=4e-12 Score=126.18 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=80.5
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.-....|||+|||+.+++++|. ++|++||+|..|.|.++..+ .+|+|||+|.+.++|.+||+ +||..++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~A~~A~~-~~~~~~~ 106 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVY---KYFKHCGPIIHVDVADSLKK-------NFRFARIEFARYDGALAAIT-KTHKVVG 106 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHH---HHHGGGSCEEEEEEEECTTS-------SSEEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC-------CcEEEEEEECCHHHHHHHHH-hCCcEeC
Confidence 3447889999999999999986 99999999999999987643 36899999999999999995 9999999
Q ss_pred CeEEEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhc
Q 004082 187 GKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237 (775)
Q Consensus 187 GR~LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~ 237 (775)
|+.|++.++. ..++|+.-+.. ..|.++|.....
T Consensus 107 g~~i~v~~~~---------------~~~l~v~nlp~---~~t~~~l~~~f~ 139 (292)
T 2ghp_A 107 QNEIIVSHLT---------------ECTLWMTNFPP---SYTQRNIRDLLQ 139 (292)
T ss_dssp TEECEEEECC---------------SCEEEEECCCT---TCCHHHHHHHHH
T ss_pred CcEEEEEECC---------------CCEEEEECCCC---CCCHHHHHHHHH
Confidence 9999999863 23344433332 357888876544
No 196
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.3e-12 Score=121.86 Aligned_cols=78 Identities=14% Similarity=0.265 Sum_probs=68.3
Q ss_pred CEEEEeCC----CCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCC----HHH----HHHHHH
Q 004082 111 NLVYIVGL----PLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSK----EEE----AVRCIQ 178 (775)
Q Consensus 111 NLVYVvGL----p~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~----~ED----A~rAIq 178 (775)
+.|||+|| |+.+++++|. +||++||+|..+.+..|+.++ .++|++||+|.+ +++ |.+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk---~~Fs~fGeV~~~~li~Dp~Tg-----~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIK---NYFKKYGEISHFEAFNDPNSA-----LPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHH---HHHHTTSCCSEEEEEECTTTC-----CEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 57999999 9999998885 999999999999999999875 468999999996 444 899999
Q ss_pred --HhcCCccCCeEEEEEecC
Q 004082 179 --SVHGFVLEGKSLKACFGT 196 (775)
Q Consensus 179 --aLDGs~LdGR~LRASfGT 196 (775)
.+||..|+||.|||.+-.
T Consensus 75 ~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HTTTTCEEETTEEEEEEECC
T ss_pred HhhhcCCeecCcEEEEEECc
Confidence 899999999999999643
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.29 E-value=5.5e-12 Score=122.64 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=68.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCc-ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC-C
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE-G 187 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYG-KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld-G 187 (775)
.+.|||+|||+.+++++|. ++|++|| +|..|.|..+ .+++|||+|.+.++|.+||+.|||..++ |
T Consensus 151 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~~i~~v~i~~~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 217 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLK---VLFSSNGGVVKGFKFFQK----------DRKMALIQMGSVEEAVQALIDLHNHDLGEN 217 (229)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHHHTTSCCEEEEEECSS----------STTCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCEEEEeCCCccCCHHHHH---HHHHHcCCCeeEEEEEEC----------CCcEEEEEECCHHHHHHHHHHHCCCccCCC
Confidence 5889999999999999886 9999999 9999998642 2468999999999999999999999999 9
Q ss_pred eEEEEEecCCC
Q 004082 188 KSLKACFGTTK 198 (775)
Q Consensus 188 R~LRASfGTTK 198 (775)
|.|+|+|++.+
T Consensus 218 ~~l~v~~a~~~ 228 (229)
T 2adc_A 218 HHLRVSFSKST 228 (229)
T ss_dssp CBCEEEECSSC
T ss_pred CeEEEEEecCC
Confidence 99999999864
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=8.2e-12 Score=113.70 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=64.3
Q ss_pred cCEEEEeCCCC--CCC---hHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 110 RNLVYIVGLPL--NLG---DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 110 rNLVYVvGLp~--~ia---eEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
...|++.||-. .+. ++||. +.|++||+|.+|.|.+++.+.. .....+|+|||+|.+.++|.+||++|||..
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~---eef~k~G~V~~v~I~~~~~~~~-~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVT---EECGKFGAVNRVIIYQEKQGEE-EDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHH---HHHTTTSCEEEEEEEEEEESSS-TTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHH---HHHhccCCEeEEEEeecCCCcc-cCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 35577777732 222 34554 9999999999999998764210 011246899999999999999999999999
Q ss_pred cCCeEEEEEecCC
Q 004082 185 LEGKSLKACFGTT 197 (775)
Q Consensus 185 LdGR~LRASfGTT 197 (775)
++||+|+|.|...
T Consensus 96 f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 96 FAGRKVVAEVYDQ 108 (118)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCcEEEEEEcCh
Confidence 9999999999753
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.24 E-value=1.1e-11 Score=112.62 Aligned_cols=104 Identities=17% Similarity=0.434 Sum_probs=81.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCC----c-------ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHH
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQY----G-------KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQY----G-------KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAI 177 (775)
+...|||+|||+.+++++|. ++|++| | .|.++.+.+ .+|+|||+|.+.++|.+||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------~~g~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQ-----------DKNFAFLEFRSVDETTQAM 68 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHHHHHHHTTCCSSSSCSEEEEEEET-----------TTTEEEEEESSHHHHHHHG
T ss_pred cccEEEEcCCCcccCHHHHH---HHHHHHhhhcccccCCCCceeeeEecC-----------CCCEEEEEeCCHHHHHHHH
Confidence 35789999999999999986 899999 5 666666643 2578999999999999999
Q ss_pred HHhcCCccCCeEEEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 178 QSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 178 qaLDGs~LdGR~LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
.+||..++|+.|+|.++..+- .-....++|+.-+.. ..|.+||......
T Consensus 69 -~~~~~~~~g~~i~v~~~~~~~--------~~~~~~~l~v~nlp~---~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 69 -AFDGIIFQGQSLKIRRPHDYQ--------PLPGAHKLFIGGLPN---YLNDDQVKELLTS 117 (172)
T ss_dssp -GGTTCEETTEECEEECCSSCC--------CCTTTTCEEEECCCT---TCCHHHHHHHHHT
T ss_pred -HhCCcEecCceeeecCCcccC--------CCCCCCEEEEEcCCC---cCCHHHHHHHHHh
Confidence 899999999999999876542 112245666665543 4688888775543
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.23 E-value=2.4e-11 Score=112.65 Aligned_cols=111 Identities=15% Similarity=0.335 Sum_probs=81.9
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCc-----------ceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHH
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYG-----------KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 178 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYG-----------KI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIq 178 (775)
...|||+|||+.+++++|. ++|++|| .|.++.+.+ .+|+|||+|.+.++|.+||
T Consensus 4 ~~~l~V~nLp~~~te~~l~---~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------~~g~afV~F~~~~~A~~Al- 68 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQ-----------DKNFAFLEFRSVDETTQAM- 68 (198)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHHHHHHHHTCCSSSSCSEEEEEEET-----------TTTEEEEEESCSHHHHHHG-
T ss_pred eeEEEEcCCCCCCCHHHHH---HHHHHHHhhcccccCCCCceEEeEecC-----------CCCEEEEEeCCHHHHHHHH-
Confidence 4679999999999999986 9999995 455554432 3578999999999999999
Q ss_pred HhcCCccCCeEEEEEecCCCccccc------------cCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 179 SVHGFVLEGKSLKACFGTTKYCHAW------------LRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 179 aLDGs~LdGR~LRASfGTTKYCssF------------LR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
.|||..++|+.|+|.++..+-...- ..........++|+.-+.. ..|.+||......
T Consensus 69 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~---~~~~~~l~~~f~~ 137 (198)
T 2yh0_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPN---YLNDDQVKELLTS 137 (198)
T ss_dssp GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCT---TCCHHHHHHHHHT
T ss_pred HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCC---CCCHHHHHHHHHH
Confidence 8999999999999999876532211 1111223446667665543 5688888765443
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.22 E-value=3.6e-12 Score=116.70 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=82.5
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 188 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR 188 (775)
....|||+|||+.+++++|. ++|.+||.|..+.|. +..++ ..+|+|||+|.+.++|.+|| .|||..++||
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~---~~f~~~g~~~~~~~~-~~~~~-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 81 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELK---VAISELFAKNDLAVV-DVRTG-----TNRKFGYVDFESAEDLEKAL-ELTGLKVFGN 81 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHH---HHHHHHHHHHTCCCC-EEEEE-----TTTTEEEEEESSHHHHHHHH-HGGGEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHhCCcceEEEE-ECCCC-----ccccEEEEEECCHHHHHHHH-hcCCCEeCCe
Confidence 46789999999999999986 899999998773332 22211 35789999999999999999 5999999999
Q ss_pred EEEEEecCCCccccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 004082 189 SLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 238 (775)
Q Consensus 189 ~LRASfGTTKYCssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~~~~~~ 238 (775)
.|+|.++..+- ...-....++|+.-+. ...|.+||......
T Consensus 82 ~l~v~~~~~~~------~~~~~~~~~l~v~nlp---~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 82 EIKLEKPKGRD------SKKVRAARTLLAKNLS---FNITEDELKEVFED 122 (175)
T ss_dssp EEEEECCCCSS------CSTTGGGGEEEEESCC---SSCCHHHHHHHCTT
T ss_pred EEEEecCCCcc------ccccccCCEEEEeCCC---CCCCHHHHHHHHHh
Confidence 99999998752 1112223456665554 34678888765443
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.18 E-value=2.2e-11 Score=118.54 Aligned_cols=69 Identities=13% Similarity=0.307 Sum_probs=61.4
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcce--eEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKV--LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI--~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
...|||+|||+.+++++|. ++|++||.| .+|.|..+. + .++|+|||+|.+.++|.+||..|||..|+|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~---~~F~~~G~v~~~~v~~~~~~-~------~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFF---EICDELGVKRPTSVKVFSGK-S------ERSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CSEEEEEEECTTCCHHHHH---HHHHHHTCCCCSEEEECSCC-S------SSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred cceEEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEEEcCC-C------CCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 4579999999999998885 999999999 899988765 2 135899999999999999999999999999
Q ss_pred e
Q 004082 188 K 188 (775)
Q Consensus 188 R 188 (775)
+
T Consensus 193 ~ 193 (205)
T 3tyt_A 193 P 193 (205)
T ss_dssp S
T ss_pred C
Confidence 8
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.17 E-value=5e-11 Score=118.26 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=70.1
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc-CCccC-
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH-GFVLE- 186 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD-Gs~Ld- 186 (775)
....|||+|||+.+++++|. ++|++||+|..|.|.++..+ .++|+|||+|.+.++|.+||..|| |..+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLE---QAFSQFGPVEKAVVVVDDRG------RATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTS------CEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred cCCcccccCCCCCCCHHHHH---HHHHhcCCeEEEEeeeCCCC------CcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 45789999999999998886 99999999999999988533 357899999999999999999995 44454
Q ss_pred --CeEEEEEecCCC
Q 004082 187 --GKSLKACFGTTK 198 (775)
Q Consensus 187 --GR~LRASfGTTK 198 (775)
||+|+|.++..+
T Consensus 166 ~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTPRPVIVEPMEQF 179 (261)
T ss_dssp SSCCBCEEEECCCE
T ss_pred CCCceEEEeecccc
Confidence 999999998754
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.3e-10 Score=101.57 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=54.9
Q ss_pred CCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEEecCCC
Q 004082 120 LNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTK 198 (775)
Q Consensus 120 ~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LRASfGTTK 198 (775)
+.+++++|. ++|++||+|.+|.|.+ .++|+|||+|.+.++|.+||+.++| +.|+.|+|.|+..+
T Consensus 27 ~~~te~~L~---~~F~~~G~V~~v~i~~----------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLL---RLLQKYGEVLNLVLSS----------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHH---HHHHTTSCEEEEEEES----------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHH---HHHHhcCCEEEEEEcc----------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 456777775 9999999999999973 1468999999999999999999655 68999999999876
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=2.3e-10 Score=121.57 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=64.9
Q ss_pred cCEEEEeC--CCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc--
Q 004082 110 RNLVYIVG--LPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL-- 185 (775)
Q Consensus 110 rNLVYVvG--Lp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L-- 185 (775)
.+.|||+| |+..+++++|. ++|++||+|.+|+|.+ .+++|||+|.+.+||++||++|||..+
T Consensus 18 s~~l~VgN~gl~~~~te~~L~---~~F~~~G~V~~v~~~~-----------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLL---PVLEKCGLVDALLMPP-----------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHH---HHHHTTSCEEEEECCT-----------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHH---HHHHhcCCeEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 47899987 68899999886 9999999999988753 257999999999999999999999987
Q ss_pred -CCe--EEEEEecCCCcc
Q 004082 186 -EGK--SLKACFGTTKYC 200 (775)
Q Consensus 186 -dGR--~LRASfGTTKYC 200 (775)
.|+ +|.++|...--+
T Consensus 84 ~~g~~~~ly~~~~~~~~~ 101 (345)
T 3tht_A 84 DLGQKITLYLNFVEKVQW 101 (345)
T ss_dssp TTSCEEECEEEECSSEEE
T ss_pred ccCCceEEEEEEeecccc
Confidence 355 789999865433
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.90 E-value=1.9e-09 Score=104.39 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=55.6
Q ss_pred HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEEecC
Q 004082 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGT 196 (775)
Q Consensus 131 ~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LRASfGT 196 (775)
.+.|++||+|.+|.|.++..+... ....+|++||+|.+.++|.+||++|||..++||+|+|.|..
T Consensus 147 ~~e~~~~G~v~~~~v~~~~~~~~~-~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 147 TEECGKFGAVNRVIIYQEKQGEEE-DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHTTTSCEEEEEEEEEECCSST-TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHccCCeEEEEEecCCCCccc-CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 489999999999999876544221 12357899999999999999999999999999999999964
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=5.5e-09 Score=93.06 Aligned_cols=54 Identities=13% Similarity=0.399 Sum_probs=49.8
Q ss_pred HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEEecCCC
Q 004082 131 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTK 198 (775)
Q Consensus 131 ~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LRASfGTTK 198 (775)
.+.|++||+|+.|+|..+ .+||||.+.++|.+||. |||+.++||.|||.++++.
T Consensus 33 ~~~F~~~G~Vi~vr~~~d-------------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 33 LQQFASFGEVILIRFVED-------------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHTTCCEEEEEECSS-------------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHhCCCeEEEEEecC-------------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 389999999999999864 27999999999999999 9999999999999999976
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=5e-08 Score=90.40 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=68.2
Q ss_pred cCccccccccCEEEEeCCCCC-CChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCC-HHHHHHHHH
Q 004082 101 QLSSVRVIQRNLVYIVGLPLN-LGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSK-EEEAVRCIQ 178 (775)
Q Consensus 101 ~LanVRVIQrNLVYVvGLp~~-iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~-~EDA~rAIq 178 (775)
|...+--...-+|||+||++. ++.++|. ++|.+||+|..|.+.++.. .|||+|.+ .++|..||.
T Consensus 9 ~~~~~~~~~G~il~v~~l~~~~~sredLk---e~F~~~G~V~~Vd~~~g~~-----------tgfVrf~~~~~~A~~av~ 74 (121)
T 1owx_A 9 HHGSLEEKIGCLLKFSGDLDDQTCREDLH---ILFSNHGEIKWIDFVRGAK-----------EGIILFKEKAKEALGKAK 74 (121)
T ss_dssp CCCCCSCCCCCEEEEEESCCSSCCHHHHH---HHTCSSCCEEEEECCTTCS-----------EEEEEESSCHHHHHHHHH
T ss_pred ccCcccccCCeEEEEecCCCCcCCHHHHH---HHHHhcCCEEEEEEecCCC-----------EEEEEECCChHHHHHHHH
Confidence 444555666788999999999 9888885 9999999999999987542 48999999 899999999
Q ss_pred Hh--cCCccCCeEEEEEec
Q 004082 179 SV--HGFVLEGKSLKACFG 195 (775)
Q Consensus 179 aL--DGs~LdGR~LRASfG 195 (775)
++ +|..|.|..+++..-
T Consensus 75 ~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 75 DANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp HTTTSCBCTTSSSEEEEEC
T ss_pred HhhcCCcEEeCcEEEEEEC
Confidence 99 478899998888753
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=8.2e-08 Score=86.24 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=55.9
Q ss_pred CEEEEeCCCCC-----CChHHHHHH-HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 111 NLVYIVGLPLN-----LGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 111 NLVYVvGLp~~-----iaeEDLLr~-~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
-+|.|.-++.. +-+++|.-. .+.|.+||+|+.|++..+ .+||||.+.++|.+||. |||..
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------------~~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------------QMLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------------EEEEECSCSHHHHHHHH-GGGSE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------------cEEEEEcChHHHHHHHh-cCCee
Confidence 45666666532 333322110 389999999999999864 27999999999999999 99999
Q ss_pred cCCeEEEEEecC
Q 004082 185 LEGKSLKACFGT 196 (775)
Q Consensus 185 LdGR~LRASfGT 196 (775)
++||.|||.+-+
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999999754
No 210
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=3.4e-06 Score=70.59 Aligned_cols=60 Identities=23% Similarity=0.524 Sum_probs=47.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
+++..||+|.+.++..+...+-.+||..+|..|+.+++.. ......||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS---SINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH---CSSCBCCTTTCCCBCCSSTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc---CCCCcCCCCCCCcccchhHH
Confidence 4557899999999877765666789999999999998742 12347899999998776553
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=1.7e-05 Score=73.48 Aligned_cols=69 Identities=12% Similarity=0.244 Sum_probs=61.8
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCC-----cceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 111 NLVYIVGLPLNLGDEDLLQRREYFGQY-----GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 111 NLVYVvGLp~~iaeEDLLr~~EyFGQY-----GKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.+|=+-|||..+.++.|. .+...| |.|.||++..|. ++|.|.|.+...|.+|-.+|||..|
T Consensus 22 rtiaL~~ipDtvndarIr---~lve~~~~i~~g~i~KI~L~pDH-----------~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLIC---QFLQEEIHINEKDIRKILLVSDF-----------NGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp SCEEEECCCTTCCHHHHH---HHHHHHTCCCTTTCSEEEEETTT-----------TEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred cEEEEecCCCCCCHHHHH---HHHhhhhccCccceeEEEEecCC-----------CceEEEEccchhhHHHHhhcCCeee
Confidence 457788999999998885 788888 999999997653 3699999999999999999999999
Q ss_pred CCeEEEEE
Q 004082 186 EGKSLKAC 193 (775)
Q Consensus 186 dGR~LRAS 193 (775)
+||+||+.
T Consensus 88 ~gr~Lr~g 95 (117)
T 2l9w_A 88 QGKVIRSG 95 (117)
T ss_dssp TTEEEEEE
T ss_pred cCeEEEec
Confidence 99999975
No 212
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.77 E-value=2.1e-05 Score=60.67 Aligned_cols=53 Identities=25% Similarity=0.674 Sum_probs=42.9
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 004082 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (775)
Q Consensus 3 de~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yd 61 (775)
++++..||+|++.+...+.....-+||..+|.-|+.+.+. ....||-||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK------EGYRCPLCSGPSS 54 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH------HTCCCTTSCCSSC
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH------cCCcCCCCCCcCC
Confidence 4567899999999976666677777999999999998864 2388999999763
No 213
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.67 E-value=2.6e-05 Score=66.35 Aligned_cols=50 Identities=32% Similarity=0.744 Sum_probs=37.5
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCC
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Y 60 (775)
+++..||+|.+.|. |....|| ||.-+|.-|+..... ......||.||+++
T Consensus 11 ~~~~~C~IC~~~~~--~p~~~~~-CgH~fC~~Ci~~~~~----~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT--DAVVIPC-CGNSYCDECIRTALL----ESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECS--SCEECTT-TCCEECHHHHHHHHH----HCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhc--CceECCC-CCCHHHHHHHHHHHH----hcCCCcCcCCCCcC
Confidence 34578999999984 4444433 999999999988763 22346899999997
No 214
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.66 E-value=3.5e-05 Score=63.65 Aligned_cols=56 Identities=20% Similarity=0.538 Sum_probs=43.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
+++..||+|++.|+..+ .....+||..+|..|+.+.+. ....||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLE------QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHT------TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHH------cCCcCcCcCCccCCcccC
Confidence 45689999999997544 334446999999999988763 347899999999876654
No 215
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.61 E-value=2e-05 Score=63.50 Aligned_cols=57 Identities=21% Similarity=0.684 Sum_probs=44.7
Q ss_pred cccCCCCCCcccCCCcc---CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 3 DEGEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 3 de~d~~CPLC~EelD~t---D~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
.+++..||+|.+.+... +....-.+||..+|.-|+.+... ....||-||+++..+.+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH------HCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH------cCCCCCCCCCccChhhe
Confidence 46778999999998543 34446668999999999998864 24689999999987655
No 216
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.59 E-value=3.3e-05 Score=62.02 Aligned_cols=57 Identities=25% Similarity=0.633 Sum_probs=43.4
Q ss_pred cCCCCCCccc-CCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 5 GEKTCPLCAE-EMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 5 ~d~~CPLC~E-elD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
++..||+|.+ .+......+..-+||..+|..|+.++.. .....||-||+++..+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-----RGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-----TTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-----cCCCcCCCCCCccccccce
Confidence 4678999999 6644444444558999999999998853 2357899999999877664
No 217
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=3.7e-05 Score=62.47 Aligned_cols=55 Identities=25% Similarity=0.640 Sum_probs=40.8
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
+++..||+|.+.+. |.... +||..+|..|+.+..+ .......||-||+++..+.+
T Consensus 18 ~~~~~C~IC~~~~~--~~~~~--~CgH~fC~~Ci~~~~~---~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQ--KPVTI--DCGHNFCLKCITQIGE---TSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCS--SEEEC--TTCCEEEHHHHHHHCS---SSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccC--CeEEc--CCCChhhHHHHHHHHH---cCCCCCCCCCCCCcCCcccC
Confidence 35679999999985 33333 7999999999998863 11245689999999876543
No 218
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.56 E-value=2.5e-05 Score=61.53 Aligned_cols=56 Identities=20% Similarity=0.640 Sum_probs=44.2
Q ss_pred cCCCCCCcccCCCcc---CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 5 GEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 5 ~d~~CPLC~EelD~t---D~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
++..||+|.+.+... +......+||..+|.-|+.+.+. ....||-||+++..+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH------HCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH------cCCCCCCCCccCCcccee
Confidence 457899999998642 34556678999999999998864 267999999999876553
No 219
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=8e-05 Score=61.38 Aligned_cols=58 Identities=31% Similarity=0.684 Sum_probs=42.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
+++..||+|.+.+. |... .+||..+|.-|+...............||-||+++..+.+
T Consensus 17 ~~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCS--SCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccC--Ccee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 35679999999984 3333 3799999999999887532222347889999999876544
No 220
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=3.9e-05 Score=61.22 Aligned_cols=53 Identities=23% Similarity=0.720 Sum_probs=41.5
Q ss_pred ccCCCCCCcccCCCcc---CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 4 EGEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 4 e~d~~CPLC~EelD~t---D~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
+++..||+|++.+... +..+..-+||..+|.-|+.+.+. ....||-||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH------HCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH------cCCCCCCCCCccCc
Confidence 4668999999998643 34446678999999999998864 26789999998753
No 221
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.51 E-value=7e-05 Score=61.71 Aligned_cols=58 Identities=28% Similarity=0.720 Sum_probs=41.5
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
+++..||+|.+.+. |.. -.+||..+|..|+........+......||.||+++..+.+
T Consensus 17 ~~~~~C~IC~~~~~--~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EPV--SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CTTTSCTTTCSCCS--SCE--ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred ccCCCCcCCChhhC--cce--eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 35679999999984 333 34699999999999876421111236789999999876543
No 222
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.50 E-value=7.5e-05 Score=57.63 Aligned_cols=51 Identities=20% Similarity=0.503 Sum_probs=38.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCC
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Y 60 (775)
+++..|++|++++...+.....-.||..+|.-|..+... ....||-||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~------~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG------SHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT------TCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH------cCCcCcCCCCEe
Confidence 566899999999976654443325999988888887652 367899999975
No 223
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=3.6e-05 Score=63.39 Aligned_cols=53 Identities=19% Similarity=0.504 Sum_probs=40.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
+++..|++|+++++..+ .+...+||..+|.-|..+.+. .+..||-||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~------~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLK------ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHH------HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHH------cCCcCcCcCCcCCCC
Confidence 46688999999997544 444456999999999888763 256899999988653
No 224
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.43 E-value=9.4e-05 Score=59.72 Aligned_cols=52 Identities=19% Similarity=0.521 Sum_probs=39.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
+++..||+|++.|+..+ ...-.+||..+|.-|+...+. ....||-||+++..
T Consensus 12 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLI------TNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHH------HCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHH------cCCCCcCcCccccC
Confidence 45578999999996433 344456899999999988763 25679999998764
No 225
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00011 Score=60.06 Aligned_cols=52 Identities=23% Similarity=0.572 Sum_probs=39.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
+++..|++|++++...+ .+.-.+||..+|.-|+.+.+. ....||-||+++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~~~~------~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRD-ELGICPCKHAFHRKCLIKWLE------VRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSS-CEEEETTTEEEEHHHHHHHHH------HCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCC-cEEEcCCCCEecHHHHHHHHH------cCCcCCCcCccccc
Confidence 45689999999996443 344457999999999888763 24589999998754
No 226
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=6e-05 Score=61.60 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=39.5
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
+++..||+|.+.+. |..+. +||..+|..|+.+.+. ....||-||+++..+.+
T Consensus 13 ~~~~~C~IC~~~~~--~~~~~--~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCV--HPVSL--PCKHVFCYLCVKGASW------LGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCS--SEEEE--TTTEEEEHHHHHHCTT------CSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccC--CCEEc--cCCCHHHHHHHHHHHH------CCCcCcCcCchhCHhhc
Confidence 45678999999983 33333 6999999999988652 34789999998876544
No 227
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.28 E-value=0.00011 Score=59.98 Aligned_cols=54 Identities=20% Similarity=0.497 Sum_probs=42.0
Q ss_pred CCcccCCCCCCcccCCCccCCCccccCCCch-hhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 1 msde~d~~CPLC~EelD~tD~~F~PC~CGYQ-IC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
++.+++..|++|++.. .|..|..-+||.. +|..|..++.. .+..||-||+++..
T Consensus 3 l~~~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 3 LPLNAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKK------RNKPCPVCRQPIQM 57 (64)
T ss_dssp --CGGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHH------TTCCCTTTCCCCCE
T ss_pred CCCCCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHH------cCCcCCCcCcchhc
Confidence 3567788999999986 5556765568988 79999999863 46789999998864
No 228
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.28 E-value=0.00013 Score=64.24 Aligned_cols=59 Identities=19% Similarity=0.522 Sum_probs=41.0
Q ss_pred ccCCCCCCcccCCCccC--------------CCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 4 EGEKTCPLCAEEMDLTD--------------QQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD--------------~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
..+..||||+++|...+ ...+--+||..+|.-|+...+.... ......||-||+.|.+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCCC
Confidence 34579999999995433 1222457899999999888763211 02356899999999765
No 229
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.27 E-value=0.00025 Score=64.73 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=63.5
Q ss_pred cCEEEEeCCCCCC-ChHHHHHH-HhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 004082 110 RNLVYIVGLPLNL-GDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 187 (775)
Q Consensus 110 rNLVYVvGLp~~i-aeEDLLr~-~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~LdG 187 (775)
-|.++|.+|+..+ ..+++..+ .++|.+|+++......+.- + -+-|.|.++++|.+|-..|||..+.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----------R-Rirv~F~~~~~A~~AR~~Lh~~~f~g 73 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----------K-RVRINFSNPLSAADARLRLHKTEFLG 73 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----------T-EEEEECSSTTHHHHHHHTSTTSEETT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----------e-EEEEEeCChHHHHHHHHHhccceecC
Confidence 3789999998876 44444223 6999999999998776532 1 46899999999999999999999999
Q ss_pred eEEEEEecC
Q 004082 188 KSLKACFGT 196 (775)
Q Consensus 188 R~LRASfGT 196 (775)
+.||+-||.
T Consensus 74 ~~~r~YFgq 82 (104)
T 1wey_A 74 KEMKLYFAQ 82 (104)
T ss_dssp EECEEECCC
T ss_pred ceeEEEecC
Confidence 999999998
No 230
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=6.3e-05 Score=60.91 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=41.5
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~~~ 68 (775)
+++..||+|++.+.. ..-+||..+|..|+.+.+. ....||-||+++......+.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD------RHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC------CCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH------CcCcCCCcCCcccCCCcccc
Confidence 456799999999854 4456899999999988752 46889999999876654443
No 231
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.13 E-value=0.00014 Score=62.54 Aligned_cols=52 Identities=25% Similarity=0.520 Sum_probs=39.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
+++..|++|++++...+ ...-.+||..+|.-|+...+. ....||-||+++..
T Consensus 38 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQ------KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHT------TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHH------cCCcCcCcCccCCC
Confidence 45678999999997544 344466999999999887753 35789999997653
No 232
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.00033 Score=56.27 Aligned_cols=53 Identities=23% Similarity=0.605 Sum_probs=40.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
+++..||+|.+.+. |... -+||..+|.-|+.+.+. .....||-||+++..+.+
T Consensus 13 ~~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQ--TECGHRFCESCMAALLS-----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEES--SCCC--CSSSCCCCHHHHHHHHT-----TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhc--CeeE--CCCCCHHHHHHHHHHHH-----hCcCCCCCCCcCCChhhc
Confidence 34578999999984 3322 48999999999998863 246789999999876643
No 233
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00043 Score=56.66 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=40.5
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
+++..||+|.+.|.. ....-+||..+|..|..+.+. ....||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFY------YSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHH------HCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHH------cCCcCCCcCcccCccccc
Confidence 345789999999853 222237899999999988763 267899999999876543
No 234
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.05 E-value=0.00044 Score=55.50 Aligned_cols=50 Identities=22% Similarity=0.620 Sum_probs=37.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
+++..||+|.+.+. |. ...-+||..+|.-|..+... ....||-||+++..
T Consensus 3 ~~~~~C~IC~~~~~--~~-~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NY-SMALPCLHAFCYVCITRWIR------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SC-EEETTTTEEESTTHHHHHHH------HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CC-cEecCCCCeeHHHHHHHHHh------CcCcCcCCChhhHh
Confidence 44579999999985 22 13345899999999988753 35789999998874
No 235
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.04 E-value=0.0002 Score=63.52 Aligned_cols=50 Identities=22% Similarity=0.557 Sum_probs=37.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
+++..||+|.+.|. |.... +||..+|..|+.+... .....||-||+++..
T Consensus 13 ~~~~~C~iC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV--EPVTL--PCNHTLCKPCFQSTVE-----KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS--SCEEC--TTSCEECHHHHCCCCC-----TTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC--ceeEc--CCCCHHhHHHHHHHHh-----HCcCCCCCCCcccCc
Confidence 34578999999984 33333 7999999999998753 235689999998864
No 236
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.04 E-value=0.00079 Score=62.71 Aligned_cols=67 Identities=24% Similarity=0.375 Sum_probs=54.6
Q ss_pred ccccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCccC
Q 004082 107 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 186 (775)
Q Consensus 107 VIQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~Ld 186 (775)
.....-|-|-|.|+..+ ..+| .+|.+||.|++.... . .+...+|+|.++.+|++|+.. ||..++
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL---~~F~~~G~Iv~~~~~---~--------~~NWihI~Y~s~~~A~rAL~k-NG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYIL---LQFAQYGNILKHVMS---N--------TGNWMHIRYQSKLQARKALSK-DGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHH---HHHHTTSCEEEEEEC---S--------SSSEEEEEESSHHHHHHHHTT-TTCEET
T ss_pred CCCCCEEEEECCCHHHH-HHHH---HHHHhhCcEEEeccC---C--------CCCeEEEEeCCHHHHHHHHHh-CCeEec
Confidence 44577899999999964 4577 799999999998862 1 234789999999999999985 999998
Q ss_pred CeE
Q 004082 187 GKS 189 (775)
Q Consensus 187 GR~ 189 (775)
|..
T Consensus 85 g~~ 87 (119)
T 1wwh_A 85 ESI 87 (119)
T ss_dssp TTE
T ss_pred CCE
Confidence 644
No 237
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.04 E-value=0.00041 Score=59.91 Aligned_cols=52 Identities=17% Similarity=0.564 Sum_probs=39.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
++..||+|.+.|.. .... -+||..+|.-|+.+... ....||-||+++....+
T Consensus 21 ~~~~C~IC~~~~~~--p~~~-~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMII-PQCSHNYCSLCIRKFLS------YKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHTBCTTTCSBCSS--EEEC-TTTCCEEEHHHHHHHHT------TCCBCTTTCCBCCGGGC
T ss_pred CCCCcccCChhhCC--cCEE-CCCCCHhhHHHHHHHHH------CCCCCCCCCCcCChhhC
Confidence 45789999999853 2111 37999999999998863 35789999999886543
No 238
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.02 E-value=0.00023 Score=66.91 Aligned_cols=49 Identities=22% Similarity=0.606 Sum_probs=37.6
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
+..||+|.+.|.. .....+||..+|.-|+.+... .....||-||+++..
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALR-----SGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH-----TTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHH-----hCcCCCCCCCCcCCC
Confidence 3589999999853 222248999999999998864 236789999999854
No 239
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.97 E-value=0.00022 Score=65.62 Aligned_cols=50 Identities=24% Similarity=0.648 Sum_probs=38.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~ 64 (775)
++..||+|++.|. |.. -.+||..+|..|+.+... ....||-||+++....
T Consensus 52 ~~~~C~iC~~~~~--~~~--~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFI--EAV--TLNCAHSFCSYCINEWMK------RKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCS--SEE--EETTSCEEEHHHHHHHTT------TCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccC--Cce--ECCCCCCccHHHHHHHHH------cCCcCCCCCCcCCCCC
Confidence 4568999999983 333 356899999999887753 3567999999886543
No 240
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.00043 Score=58.60 Aligned_cols=57 Identities=21% Similarity=0.447 Sum_probs=42.2
Q ss_pred cccCCCCCCcccCCCc-----------cCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 3 DEGEKTCPLCAEEMDL-----------TDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 3 de~d~~CPLC~EelD~-----------tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
|.++..|++|+++|+. .|......+||..+|.-|..+-+. ....||-||+++....+
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK------QNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT------TCCBCTTTCCBCCEEEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH------hCCCCCCcCCCcchhhc
Confidence 4467789999999964 343445557999998999887753 34689999999876543
No 241
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.89 E-value=0.00061 Score=61.19 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=37.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
++..||+|.+.|. |... .+||..+|..|+.+... .....||-||+++..
T Consensus 51 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPIT--TVCQHNVCKDCLDRSFR-----AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc--CcEE--eeCCCcccHHHHHHHHh-----HCcCCCCCCCccCCC
Confidence 4578999999985 3222 37999999999988763 234589999999876
No 242
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.87 E-value=0.00042 Score=56.84 Aligned_cols=58 Identities=28% Similarity=0.598 Sum_probs=40.4
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhh-hcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAE-KEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~-k~~~~grCPACRr~Ydee~i 65 (775)
+++..||+|.+.+. |... .+||..+|.-|+.+...... .......||-||+++..+.+
T Consensus 10 ~~~~~C~IC~~~~~--~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECS--SCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccC--CeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 35678999999984 3332 47999999999998753100 00226789999999876543
No 243
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.00084 Score=55.98 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=37.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yd 61 (775)
++..||+|.+.|. |... .+||..+|.-|+.+.+. ....||-||+++.
T Consensus 14 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ--NPVV--TKCRHYFCESCALEHFR------ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC--SEEE--CTTSCEEEHHHHHHHHH------HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc--CeeE--ccCCCHhHHHHHHHHHH------CCCcCCCcCcccc
Confidence 3468999999983 3332 57999999999998864 2678999999986
No 244
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.79 E-value=0.002 Score=56.12 Aligned_cols=55 Identities=22% Similarity=0.655 Sum_probs=40.6
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
++..||+|.+.+. |... .+||..+|.-|+.+.... ......||-||.++....+.
T Consensus 20 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 20 KILECPICLELIK--EPVS--TKCDHIFCKFCMLKLLNQ---KKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHTSCSSSCCCCS--SCCB--CTTSCCCCSHHHHHHHHS---SSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCCcccChhhc--CeEE--CCCCCHHHHHHHHHHHHh---CCCCCCCcCCCCcCCHhhcC
Confidence 3568999999884 3333 479999999999988641 12235899999999876554
No 245
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.00084 Score=57.72 Aligned_cols=57 Identities=19% Similarity=0.472 Sum_probs=43.5
Q ss_pred cccCCCCCCcccCCCccCCCccccCCC---chhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 3 DEGEKTCPLCAEEMDLTDQQLKPCKCG---YEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 3 de~d~~CPLC~EelD~tD~~F~PC~CG---YQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
++++..|+||.++++..+....||.|. ..+..-|..+=+.. ..+..||-||.+|.-+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~----~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS----SDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH----HCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh----CCCCCCCCCCCeeecC
Confidence 356689999999998777778999983 67777787776532 2245899999999644
No 246
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.74 E-value=0.00075 Score=58.98 Aligned_cols=55 Identities=25% Similarity=0.628 Sum_probs=40.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVG 67 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~~ 67 (775)
++..||+|.+.|. |... --+||..+|..|+.+.+.. ....||-||+++..+.+..
T Consensus 21 ~~~~C~IC~~~~~--~p~~-~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARL-CPHCSKLCCFSCIRRWLTE-----QRAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCS--SEEE-CTTTCCEEEHHHHHHHHHH-----TCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCccCCcccc--Cccc-cCCCCChhhHHHHHHHHHH-----CcCCCCCCCCcCCHHHhHh
Confidence 4578999999995 2222 1468999999999988641 1268999999998776643
No 247
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.73 E-value=0.00083 Score=55.45 Aligned_cols=50 Identities=28% Similarity=0.601 Sum_probs=37.1
Q ss_pred ccCCCCCCcccCCCccCCCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~-CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yd 61 (775)
+++..||+|.+.|. |... .+ ||..+|..|+.+.+. ......||-||+++-
T Consensus 13 ~~~~~C~IC~~~~~--~p~~--~~~CgH~fC~~Ci~~~~~----~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT--DAVV--IPCCGNSYCDECIRTALL----ESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT--TCEE--CSSSCCEECTTHHHHHHH----HSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh--CCeE--cCCCCCHHHHHHHHHHHH----hcCCCcCCCCCCcCC
Confidence 34579999999985 3322 56 999999999998864 122368999999754
No 248
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.71 E-value=0.0014 Score=56.21 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=40.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
++-.||||.+.| +|-...| ||+-+|+-|..+... .++.||-||.++..+.+
T Consensus 13 ~~~~CpI~~~~m--~dPV~~~--cGhtf~r~~I~~~l~------~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 13 DEFRDPLMDTLM--TDPVRLP--SGTVMDRSIILRHLL------NSPTDPFNRQMLTESML 63 (85)
T ss_dssp TTTBCTTTCSBC--SSEEECT--TSCEEEHHHHHHHHH------HCSBCTTTCCBCCGGGC
T ss_pred hheECcccCchh--cCCeECC--CCCEECHHHHHHHHh------cCCCCCCCcCCCChHhc
Confidence 457899999999 4555554 899999999888763 26899999999987644
No 249
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.70 E-value=0.00081 Score=55.44 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=40.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
.++..||+|.+.|. |-.. .+||+-+|.-|+.+..+ .....||-||+++..+.+
T Consensus 6 ~~~~~C~IC~~~~~--~Pv~--~~CgH~fc~~Ci~~~~~-----~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 6 PEYFRCPISLELMK--DPVI--VSTGQTYERSSIQKWLD-----AGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSSCTTTSCCCS--SEEE--ETTTEEEEHHHHHHHHT-----TTCCBCTTTCCBCSSCCC
T ss_pred cccCCCCCcccccc--CCEE--cCCCCeecHHHHHHHHH-----HCcCCCCCCcCCCChhhC
Confidence 35689999999984 3222 47999999999988763 236789999999876544
No 250
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.0014 Score=54.32 Aligned_cols=48 Identities=29% Similarity=0.686 Sum_probs=37.1
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCch-hhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 2 SDEGEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 2 sde~d~~CPLC~EelD~tD~~F~PC~CGYQ-IC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
.++++..|++|++.. .|..|.| ||.. +|..|..++ ..||-||+++..-
T Consensus 11 ~~~~~~~C~IC~~~~--~~~v~~p--CgH~~~C~~C~~~~----------~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGT--VNWVLLP--CRHTCLCDGCVKYF----------QQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSC--CCCEETT--TTBCCSCTTHHHHC----------SSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCC--CCEEEEC--CCChhhhHHHHhcC----------CCCCCCCcchhce
Confidence 456678999999976 5666766 5677 888898754 5799999988764
No 251
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.60 E-value=0.0006 Score=60.25 Aligned_cols=57 Identities=21% Similarity=0.677 Sum_probs=44.2
Q ss_pred ccCCCCCCcccCCCcc---CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 4 EGEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 4 e~d~~CPLC~EelD~t---D~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
.++..||+|.+.|+.. +....-.+||..+|..|+.+.+. ....||.||+++....+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT------TCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH------hCCCCCCCCCcCcccccc
Confidence 4568999999998543 33346678999999999998863 346899999999877664
No 252
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.59 E-value=0.00075 Score=54.86 Aligned_cols=51 Identities=22% Similarity=0.528 Sum_probs=39.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCch-hhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQ-IC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
+.+..|++|++.. .|..|.--+||.. +|..|..++.. .++.||-||++...
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKK------AGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHH------TTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHH------hCCcCCCcCchhhc
Confidence 4568999999976 4445554577898 89999999863 35799999998864
No 253
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.59 E-value=0.00072 Score=56.20 Aligned_cols=44 Identities=27% Similarity=0.701 Sum_probs=34.7
Q ss_pred CCCCCCcccCCCccCCCccccCCCch-hhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 6 EKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQ-IC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
+..||+|++.+ .|..+.| ||.. +|..|..++ ..||-||+++...
T Consensus 25 ~~~C~IC~~~~--~~~~~~p--CgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFVP--CGHLVTCKQCAEAV----------DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSC--CCBCCSS--SCCCCBCHHHHHHC----------SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCC--CCEEEec--CCCHHHHHHHhhCC----------CCCccCCceecCc
Confidence 46899999986 5566665 7888 899998654 5799999988764
No 254
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.55 E-value=0.00079 Score=59.50 Aligned_cols=58 Identities=21% Similarity=0.666 Sum_probs=44.3
Q ss_pred cccCCCCCCcccCCCcc---CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 3 DEGEKTCPLCAEEMDLT---DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 3 de~d~~CPLC~EelD~t---D~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
++++..||+|.+.+... .....-++||..+|..|..+.++ ....||-||+++.++.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH------HCSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH------cCCCCCCCCCcCChhcce
Confidence 45678899999988643 23336678999999999988764 356899999999887653
No 255
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=61.48 Aligned_cols=50 Identities=22% Similarity=0.472 Sum_probs=38.4
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
++..||+|.+.|. |... .+||.-+|..|+.+... .....||-||.++...
T Consensus 77 ~~~~C~IC~~~~~--~pv~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVT--TECFHNVCKDCLQRSFK-----AQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc--CCEE--cCCCCchhHHHHHHHHH-----hCCCcCCCCCccCCCC
Confidence 4578999999884 3222 57999999999998864 1335799999999876
No 256
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.44 E-value=0.002 Score=58.07 Aligned_cols=53 Identities=15% Similarity=0.335 Sum_probs=40.3
Q ss_pred cccCCCCCCcccCCCcc--------------CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 004082 3 DEGEKTCPLCAEEMDLT--------------DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (775)
Q Consensus 3 de~d~~CPLC~EelD~t--------------D~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yd 61 (775)
|-+++.|+||.+.|+.. |-.....+||..++.-|..+-+. ....||-||++|.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT------TCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH------cCCcCcCCCCcce
Confidence 34568999999999754 22345568999988888887653 3678999999875
No 257
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.43 E-value=0.0016 Score=57.64 Aligned_cols=53 Identities=21% Similarity=0.538 Sum_probs=40.4
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
++..||+|.+.|. |... .+||..+|..|+.+.... ....||-||+++....+.
T Consensus 22 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHILA--DPVE--TSCKHLFCRICILRCLKV-----MGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBCS--SEEE--CTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHhc--CcEE--cCCCCcccHHHHHHHHhH-----CcCcCCCCCCCCCHhhcc
Confidence 3578999999984 3222 579999999999988642 256899999998876543
No 258
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.41 E-value=0.0018 Score=51.16 Aligned_cols=47 Identities=23% Similarity=0.567 Sum_probs=35.2
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 3 de~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
++++..||+|.+.+. |.... +||.-+|..|... ....||-||+++.-
T Consensus 3 e~~~~~C~IC~~~~~--~p~~l--~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAK--CPKLL--PCLHTLCSGCLEA---------SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCB--CCSCS--TTSCCSBTTTCSS---------SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccC--CeEEc--CCCCcccHHHHcc---------CCCCCCcCCcEeec
Confidence 456789999999885 34444 4899888888665 25689999998753
No 259
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.39 E-value=0.0016 Score=57.17 Aligned_cols=51 Identities=24% Similarity=0.483 Sum_probs=39.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
+++..||+|.+.|. | .....+||.-+|..|+..... ....||-||+++...
T Consensus 13 ~~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--D-ATTIIECLHSFCKTCIVRYLE------TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCS--S-EEEETTTCCEEEHHHHHHHHT------SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHh--C-cCEeCCCCChhhHHHHHHHHH------hCCcCcCCCcccccc
Confidence 45689999999984 2 222238999999999988763 348899999998764
No 260
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.33 E-value=0.0017 Score=58.02 Aligned_cols=53 Identities=19% Similarity=0.480 Sum_probs=39.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
+++..||+|.+.|.. . .-.+||..+|.-|+...+.. ....||-||+++....+
T Consensus 16 ~~~~~C~IC~~~~~~--p--~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 16 ESKYECPICLMALRE--A--VQTPCGHRFCKACIIKSIRD-----AGHKCPVDNEILLENQL 68 (118)
T ss_dssp CGGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHHHH-----HCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCcCChhhcC--e--EECCcCChhhHHHHHHHHhh-----CCCCCCCCCCCcCHHhc
Confidence 345789999999853 2 22479999999999988642 23489999998876543
No 261
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.32 E-value=0.0028 Score=56.18 Aligned_cols=51 Identities=20% Similarity=0.088 Sum_probs=40.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
++-.||||.+.| +|-...| ||+-+|+-|..+... .++.||-||.++..+.+
T Consensus 28 ~~~~CpI~~~~m--~dPV~~~--cGhtf~r~~I~~~l~------~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 28 DEFRDPLMDTLM--TDPVRLP--SGTIMDRSIILRHLL------NSPTDPFNRQTLTESML 78 (100)
T ss_dssp TTTBCTTTCSBC--SSEEEET--TTEEEEHHHHHHHTT------SCSBCSSSCCBCCTTSS
T ss_pred HhhCCcCccCcc--cCCeECC--CCCEEchHHHHHHHH------cCCCCCCCCCCCChhhc
Confidence 357899999999 4555555 899999999887763 36899999999986544
No 262
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.28 E-value=0.0021 Score=57.45 Aligned_cols=49 Identities=18% Similarity=0.439 Sum_probs=37.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~ 64 (775)
++..||+|.+.|. |. ....+||..+|.-|+.+.. ...||-||+++....
T Consensus 21 ~~~~C~IC~~~~~--~p-v~~~~CgH~fC~~Ci~~~~--------~~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EP-VCLGGCEHIFCSNCVSDCI--------GTGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCS--SC-BCCCSSSCCBCTTTGGGGT--------TTBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhh--Cc-cEeCCCCCHHHHHHHHHHh--------cCCCcCCCCcCcccc
Confidence 5689999999984 22 3333789999999998874 278999999986443
No 263
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.14 E-value=0.0018 Score=55.76 Aligned_cols=61 Identities=26% Similarity=0.645 Sum_probs=41.6
Q ss_pred ccCCCCCCcccCCCccCCCccc-cCCCchhhhhhHhHhHHhhhhcc--cCCCCCC--CCCC--Ccccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKP-CKCGYEICVWCWHHIMDMAEKEE--TEGRCPA--CRSP--YDKEKIV 66 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~P-C~CGYQIC~fC~hrI~~~~~k~~--~~grCPA--CRr~--Ydee~i~ 66 (775)
.+..+||+|++++.. ..+.. -+||...|.-||....+..-++. ..-+||. ||.. ...+.+.
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp CSBCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCCcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 356789999999854 33333 36999999999997765321221 2347999 9998 6655543
No 264
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.0041 Score=49.31 Aligned_cols=46 Identities=26% Similarity=0.688 Sum_probs=33.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCC
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPAC 56 (775)
+++..||+|.+.+. |... .+||..+|.-|+.+.++. ......||-|
T Consensus 18 ~~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ--KPVT--IDCGHNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS--SCEE--CTTSSEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred ccCCCCCcCCchhC--CeEE--eCCCCcchHHHHHHHHHc---CCCCCcCcCC
Confidence 35679999999985 3322 379999999999988741 2245689988
No 265
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.03 E-value=0.0016 Score=54.25 Aligned_cols=45 Identities=24% Similarity=0.619 Sum_probs=35.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCch-hhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQ-IC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
++..|++|++.+ .|..+. +||.. +|..|+.++ ..||-||+++...
T Consensus 23 ~~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRN--IAIVFV--PCGHLVTCKQCAEAV----------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSB--CCEEEE--TTCCBCCCHHHHTTC----------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCC--CCEEEc--CCCChhHHHHhhhcC----------ccCCCcCcCccCc
Confidence 457899999987 455565 57999 999998765 5799999988754
No 266
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.98 E-value=0.0064 Score=53.73 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=39.3
Q ss_pred cCCCCCCcccCCCccCCCccccCCC-chhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCG-YEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CG-YQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
++-.||||.+.| +|-... +|| +-+|+-|..+..+ .++.||-||.++..+.+
T Consensus 21 ~~~~CpI~~~~m--~dPV~~--~cG~htf~r~cI~~~l~------~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 21 DEFLDPIMSTLM--CDPVVL--PSSRVTVDRSTIARHLL------SDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp TTTBCTTTCSBC--SSEEEC--TTTCCEEEHHHHHHHTT------TSCBCTTTCSBCCTTTS
T ss_pred HhcCCcCccccc--cCCeEC--CCCCeEECHHHHHHHHH------hCCCCCCCCCCCChhhc
Confidence 457899999999 344443 588 9999999888763 26789999999986644
No 267
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.97 E-value=0.0032 Score=59.31 Aligned_cols=53 Identities=19% Similarity=0.480 Sum_probs=40.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
+++..||+|.+.|.. . .-++||..+|..|+.+.+.. ....||.||.++....+
T Consensus 16 ~~~~~C~IC~~~~~~--p--v~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 16 ESKYECPICLMALRE--A--VQTPCGHRFCKACIIKSIRD-----AGHKCPVDNEILLENQL 68 (170)
T ss_dssp CGGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHHHH-----HCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCChhhcC--c--EECCCCCHHHHHHHHHHHHh-----CCCCCCCCccCcchhhh
Confidence 345799999999853 2 33789999999999998742 23489999998876543
No 268
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.95 E-value=0.0036 Score=61.73 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=38.8
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i 65 (775)
++-.||||.+.| +|....| ||+-+|+-|..+..+. ....||-||.++....+
T Consensus 207 ~~~~c~i~~~~~--~dPv~~~--~gh~f~~~~i~~~~~~-----~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 207 DYLCGKISFELM--REPCITP--SGITYDRKDIEEHLQR-----VGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp STTBCTTTCSBC--SSEEECS--SCCEEETTHHHHHHHH-----TCSSCTTTCCCCCGGGC
T ss_pred cccCCcCcCCHh--cCCeECC--CCCEECHHHHHHHHHH-----CCCCCcCCCCCCchhcC
Confidence 457899999999 4445444 8999999999887641 12349999999976544
No 269
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.80 E-value=0.0064 Score=49.67 Aligned_cols=52 Identities=31% Similarity=0.823 Sum_probs=37.6
Q ss_pred CCcccCCCCCCcccCCCccCCCccccCC-C---c--hhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 004082 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKC-G---Y--EICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (775)
Q Consensus 1 msde~d~~CPLC~EelD~tD~~F~PC~C-G---Y--QIC~fC~hrI~~~~~k~~~~grCPACRr~Yd 61 (775)
|.|+++..|.+|.++.+ +..+.||.| | | +-|+.=|=... .+..||-||.+|.
T Consensus 1 ~e~~~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-------~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 1 MEDEDVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS-------RNTACQICGVVYN 58 (60)
T ss_dssp CTTCSCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH-------TCSBCTTTCCBCC
T ss_pred CCCCCCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC-------CCCccCCCCCeee
Confidence 88999999999999854 445899999 4 2 33444443331 3578999999885
No 270
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=95.76 E-value=0.0024 Score=54.26 Aligned_cols=52 Identities=27% Similarity=0.611 Sum_probs=39.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCch-hhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAA 70 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQ-IC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~~~~~ 70 (775)
++..|++|++.+ .|..|. +||.. +|..|..++ ..||-||++.....-.|.+.
T Consensus 17 ~~~~C~IC~~~~--~~~v~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~~~i~~p~ 69 (79)
T 2yho_A 17 EAMLCMVCCEEE--INSTFC--PCGHTVCCESCAAQL----------QSCPVCRSRVEHVQHVYLPT 69 (79)
T ss_dssp HHTBCTTTSSSB--CCEEEE--TTCBCCBCHHHHTTC----------SBCTTTCCBCCEEEECBCTT
T ss_pred CCCEeEEeCccc--CcEEEE--CCCCHHHHHHHHHhc----------CcCCCCCchhhCeEEEEeCc
Confidence 457899999976 556666 57888 899998876 28999999988754445443
No 271
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.59 E-value=0.0024 Score=58.87 Aligned_cols=53 Identities=15% Similarity=0.335 Sum_probs=2.0
Q ss_pred cccCCCCCCcccCCCcc--------------CCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCc
Q 004082 3 DEGEKTCPLCAEEMDLT--------------DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (775)
Q Consensus 3 de~d~~CPLC~EelD~t--------------D~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yd 61 (775)
|-+++.|+||.++|+.. |......+||..+|.-|..+-+. ....||-||+++.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~------~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNREWE 111 (117)
T ss_dssp CCCC---------------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH------cCCcCCCCCCeee
Confidence 34568999999999642 22344468999988888776542 2578999999875
No 272
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.47 E-value=0.011 Score=45.53 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=33.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCC
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPAC 56 (775)
+++..||+|.+.+.. ... .+||..+|..|+.+.+.. ......||-|
T Consensus 13 ~~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE--PVI--IECGHNFCKACITRWWED---LERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS--CCC--CSSCCCCCHHHHHHHTTS---SCCSCCCSCC
T ss_pred ccCCCCccCCcccCc--cEe--CCCCCccCHHHHHHHHHh---cCCCCCCCCC
Confidence 356799999999853 333 469999999999987531 1246789987
No 273
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.40 E-value=0.019 Score=51.47 Aligned_cols=53 Identities=26% Similarity=0.816 Sum_probs=43.9
Q ss_pred cCCCCCCcccCCCccC--CCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 5 GEKTCPLCAEEMDLTD--QQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD--~~F~PC~-CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
....|.+|-+.+-+|. ..|.-|- |+|-+|+-||..=+ .+.+-.||-|..+|+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-----keG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-----REGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-----HTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH-----hccCccccccCCcccc
Confidence 4479999999975444 4799998 99999999999765 3578889999999973
No 274
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.34 E-value=0.062 Score=47.72 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=52.4
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 112 LVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.|-|..||+.+++|+++ +.++.++++.-..-...+.. ..+..-..|||.|.+.|++..-++.+||..+
T Consensus 3 KvVIRrLPP~LteeeF~---~~l~~~~~~d~~~fv~G~~s---~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQ---EHLQPMPEHDYFEFFSNDTS---LYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEEECTTCCHHHHH---HHHCSCCCEEEEEEEESCCS---STTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHH---HHhcCcccceEEEEeCCccC---CCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 57899999999999997 88999987654444332221 1223345799999999999999999999986
No 275
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.02 E-value=0.012 Score=64.10 Aligned_cols=52 Identities=25% Similarity=0.603 Sum_probs=38.4
Q ss_pred CCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
+..|++|++.+. |..+ -+||...|.-|...... .....||-||++.....+.
T Consensus 332 ~~~C~ICle~~~--~pv~--lpCGH~FC~~Ci~~wl~-----~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDK--DVKI--EPCGHLMCTSCLTSWQE-----SEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBC--CEEE--ETTCCEECHHHHHHHHH-----HTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCC--CeEE--eCCCChhhHHHHHHHHh-----cCCCCCCCCCCccCCceeE
Confidence 368999999983 3333 46788889999887753 1367899999988776543
No 276
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.00 E-value=0.04 Score=50.15 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=44.4
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD 181 (775)
+.-||+.+.|+.+...||+ ++|.+||-|.=-.|+ | -.|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l~FP~ewKt~DI~---~lFs~fggv~I~Wid-D------------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLY---QLFSAFGNIQISWID-D------------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEEECCTTCCHHHHH---HHHTTTCSCCCEEEE-T------------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHH---HHhhccCCEEEEEEc-C------------CeEEEEecCHHHHHHHHHhcc
Confidence 4556777999999999998 899999955322332 2 169999999999999999874
No 277
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.71 E-value=0.0047 Score=57.68 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=36.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCC
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Y 60 (775)
+++..||+|.+.|.. - +-.+||..+|..|+.+... .....||.||.+.
T Consensus 29 ~~~~~C~IC~~~~~~--p--v~~~CgH~FC~~Ci~~~~~-----~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRR--P--FQAQCGHRYCSFCLASILS-----SGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHGG-----GSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcC--c--EECCCCCccCHHHHHHHHh-----cCCCCCCCCCCcc
Confidence 345799999999843 2 3369999999999998863 2234899999975
No 278
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.68 E-value=0.012 Score=55.73 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=54.0
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEE-EeecCC------ccccccCC--CceEEEEEeCCHHHHHHHHHH
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVS-MSRTAA------GVIQQFPN--NTCSVYITYSKEEEAVRCIQS 179 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIv-I~rd~~------~~~qq~p~--~rgsAYVTFs~~EDA~rAIqa 179 (775)
+..-|-|-|.|+..+. .+| ++|++||.|++-+ +.+... ......|. .+.-++|||+++.+|.+|++
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI---~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVI---AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp --CEEEEECCCGGGHH-HHH---HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-
T ss_pred CceEEEEEecCHHHHH-HHH---HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-
Confidence 3466889999998755 567 8999999998732 221000 00000110 23467999999999999998
Q ss_pred hcCCccCCeEEEEE
Q 004082 180 VHGFVLEGKSLKAC 193 (775)
Q Consensus 180 LDGs~LdGR~LRAS 193 (775)
-||..++|..|-|-
T Consensus 81 ~NG~ii~G~mIGV~ 94 (132)
T 3p3d_A 81 ENGAVFNGVLLGVI 94 (132)
T ss_dssp TTTCEETTEECEEE
T ss_pred hCCeEeCcEEEEEE
Confidence 79999999866654
No 279
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.52 E-value=0.035 Score=50.60 Aligned_cols=57 Identities=19% Similarity=0.379 Sum_probs=44.6
Q ss_pred ccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc
Q 004082 109 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (775)
Q Consensus 109 QrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD 181 (775)
.|.-||+.+.|+.+...||+ ++|.+||-|. |.=.-| -.|||.|.+++.|..|+..+.
T Consensus 4 ~R~HV~~l~FP~ewKt~Di~---~lFs~fggv~-I~WidD------------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 4 GSDHVLHVTFPKEWKTSDLY---QLFSAFGNIQ-ISWIDD------------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEEECCTTCCHHHHH---HHTTTSEEEE-EEEEET------------TEEEEEEEEECHHHHHHHHHT
T ss_pred CCCeEEEEeCChhhhhHHHH---HHHhccCCEE-EEEEcC------------CeEEEEecCHHHHHHHHHhcc
Confidence 35567777999999999998 8999999332 222222 169999999999999999874
No 280
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.52 E-value=0.016 Score=56.97 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=38.3
Q ss_pred cCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCC-CCCCCCCCCccccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEG-RCPACRSPYDKEKI 65 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~g-rCPACRr~Ydee~i 65 (775)
++-.||||.+.|. |.... +||+-+|+-|..+.... ++ .||-||.++....+
T Consensus 105 ~~f~CPI~~elm~--DPV~~--~~Ghtfer~~I~~~l~~------~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 105 DYLCGKISFELMR--EPCIT--PSGITYDRKDIEEHLQR------VGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp GGGBCTTTCSBCS--SEEEC--TTSCEEEHHHHHHHHHH------TCSBCTTTCCBCCGGGC
T ss_pred HhhcccCccccCC--CCeEC--CCCCEECHHHHHHHHHh------CCCCCCCCcCCCChhhC
Confidence 4578999999994 44444 58999999998877641 23 59999999976544
No 281
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.028 Score=58.63 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=37.5
Q ss_pred CCCCCCcccCCCccCCCcccc-CCCchhhhhhHhHhHHhhhhcccCCCCCC--CCCCCccccc
Q 004082 6 EKTCPLCAEEMDLTDQQLKPC-KCGYEICVWCWHHIMDMAEKEETEGRCPA--CRSPYDKEKI 65 (775)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC-~CGYQIC~fC~hrI~~~~~k~~~~grCPA--CRr~Ydee~i 65 (775)
+..||||.+.|. |-- -. .||.-+|+-|+.+... ......||- ||+++....+
T Consensus 181 el~CPIcl~~f~--DPV--ts~~CGHsFcR~cI~~~~~----~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 181 ELTCPITCKPYE--APL--ISRKCNHVFDRDGIQNYLQ----GYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CSBCTTTSSBCS--SEE--EESSSCCEEEHHHHHHHST----TCSCEECSGGGCSCEECGGGE
T ss_pred eeECcCccCccc--CCe--eeCCCCCcccHHHHHHHHH----hCCCCCCCcccccCcCchhhC
Confidence 368999999993 221 13 6999999999987753 223468998 9998765544
No 282
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.81 E-value=0.019 Score=63.77 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=39.5
Q ss_pred CEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHH
Q 004082 111 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 178 (775)
Q Consensus 111 NLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIq 178 (775)
..|||. .|.++.+.+|+ +||.|||+|.++.+.++. +.+|-|+|.+.++|..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~---~y~~~~g~i~~~~~~~~~----------g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFL---KYLSQFGPINNHFFYESF----------GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHH---HHHGGGSCCCCEEEECSS----------SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHH---HHHHhcCCcceEEEEccC----------CeEEEEEeCCHHHHHHHHh
Confidence 568998 48888888997 999999999999998643 4689999999988885543
No 283
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.42 E-value=0.13 Score=44.59 Aligned_cols=59 Identities=22% Similarity=0.439 Sum_probs=38.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCC--CCCC-Cccccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPA--CRSP-YDKEKI 65 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPA--CRr~-Ydee~i 65 (775)
.++..||||.+.|. |-...| .||+-+|+-|..+..+...+......||- |++. +..+.+
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhc--CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 45689999999994 322221 49999999998877642110112458999 9987 555443
No 284
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.07 E-value=0.034 Score=50.60 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=53.3
Q ss_pred CceEEEEEeCCHHHHHHHHHHh-cCCccCCeEEEEEecCCCccccc--------cCCCCCCCCCCcccccCCCCCCCccH
Q 004082 159 NTCSVYITYSKEEEAVRCIQSV-HGFVLEGKSLKACFGTTKYCHAW--------LRNVPCTNPDCLYLHEVGSQEDSFTK 229 (775)
Q Consensus 159 ~rgsAYVTFs~~EDA~rAIqaL-DGs~LdGR~LRASfGTTKYCssF--------LR~~~C~NpdC~YLHE~g~~~DsfTK 229 (775)
-.|+++|.|.+.++|++||+.+ ||..++| .|++.+++.+.-..- ...........+|+--+.. ..|.
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~---~~t~ 87 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN---NGNK 87 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS---CCSC
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC---CCCH
Confidence 3678899999999999999999 9999999 999999886532111 1223333445666665543 3577
Q ss_pred HHHHhhhc
Q 004082 230 DEIISAYT 237 (775)
Q Consensus 230 eem~~~~~ 237 (775)
++|.....
T Consensus 88 ~~l~~~F~ 95 (150)
T 2i2y_A 88 TELERAFG 95 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776544
No 285
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.72 E-value=0.42 Score=43.82 Aligned_cols=67 Identities=30% Similarity=0.417 Sum_probs=49.2
Q ss_pred cCEEEEeCCCCCCChHHHHHHHhhhcC-C----cceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCc
Q 004082 110 RNLVYIVGLPLNLGDEDLLQRREYFGQ-Y----GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 184 (775)
Q Consensus 110 rNLVYVvGLp~~iaeEDLLr~~EyFGQ-Y----GKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~ 184 (775)
+..|.|.|||+.+.+| +| .-||.. - |+|..|.... .+|+|||.+.+.|++-++. .-..
T Consensus 8 ~~~I~V~~lPp~~~~e-~L--~LYFEn~rrsGGG~V~~v~~~~-------------~~AvItF~d~~va~rVL~k-~~H~ 70 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDE-LL--TLYFENRRRSGGGPVLSWQRLG-------------CGGVLTFREPADAERVLAQ-ADHE 70 (104)
T ss_dssp CCEEEEESCCTTSCHH-HH--HHHHHCTTTTCCCCEEEEEEET-------------TEEEEEESSHHHHHHHHTC-SCCB
T ss_pred ccEEEEECCCCCCChh-Hh--eEEEeCCCcCCCceeeEEEEcC-------------CcEEEEEcChHHHHHHhcC-Ccce
Confidence 5789999999998654 55 369987 2 7888876531 4689999999999887764 1245
Q ss_pred cCCeEEEEE
Q 004082 185 LEGKSLKAC 193 (775)
Q Consensus 185 LdGR~LRAS 193 (775)
|.|-.|.|.
T Consensus 71 L~~~~LsV~ 79 (104)
T 2dhx_A 71 LHGAQLSLR 79 (104)
T ss_dssp SSSSBCEEE
T ss_pred ecCeEEEEE
Confidence 677666664
No 286
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.48 E-value=0.25 Score=42.25 Aligned_cols=52 Identities=25% Similarity=0.673 Sum_probs=37.1
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCccc
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPC-KCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC-~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee 63 (775)
|....|++|.+.+...+ -| .|+..+=.-|..+-+ +...+..||.||+++.-+
T Consensus 13 ~~i~~C~IC~~~i~~g~----~C~~C~h~fH~~Ci~kWl----~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ----SCETCGIRMHLPCVAKYF----QSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSE----ECSSSCCEECHHHHHHHS----TTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCC----ccCCCCchhhHHHHHHHH----HhcCCCCCCCCcCcCCCC
Confidence 55689999999997432 34 577766667777765 333457899999988644
No 287
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=90.43 E-value=0.31 Score=44.29 Aligned_cols=76 Identities=7% Similarity=-0.027 Sum_probs=44.7
Q ss_pred CceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEEecCCCcc-----ccccCCCCCCCCCCcccccCCCCCCCccHHHHH
Q 004082 159 NTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKYC-----HAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEII 233 (775)
Q Consensus 159 ~rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LRASfGTTKYC-----ssFLR~~~C~NpdC~YLHE~g~~~DsfTKeem~ 233 (775)
.+|++||+|.+.++|++|++.++|....+..+.+...+.... .............++|+--+.. ..|.+||.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~---~~~~~~l~ 88 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY---RTSPDTLR 88 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT---TCCHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC---CCCHHHHH
Confidence 478999999999999999999887543332222221111100 0011222233456777766643 37888887
Q ss_pred hhhc
Q 004082 234 SAYT 237 (775)
Q Consensus 234 ~~~~ 237 (775)
....
T Consensus 89 ~~F~ 92 (158)
T 2kn4_A 89 RVFE 92 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7554
No 288
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=90.13 E-value=0.47 Score=42.86 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=44.8
Q ss_pred EEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhcCCcc
Q 004082 112 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185 (775)
Q Consensus 112 LVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLDGs~L 185 (775)
.|-|..||+.+++|+++ +.++.+=++ .-..=..|.....+..-..|||.|.+.|+...=.+.+||..+
T Consensus 11 KvVIRrLPP~Ltee~F~---~~l~~~~~~---d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLE---EQLRPLPAH---DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CEEEECCCSCSCHHHHT---TTTSCCSSE---EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eEEEeCCCCCCCHHHHH---HHhCCcCcc---ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 36678899999999876 566654332 111111111111122223689999999999999999999886
No 289
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=89.75 E-value=0.16 Score=41.41 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccccc
Q 004082 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (775)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~i~ 66 (775)
..||||.+.|. |-...| +||+-+|+-|..+.+. .++.||-++.+...+.+.
T Consensus 4 ~~CpIs~~~m~--dPV~~~-~sG~~yer~~I~~~l~------~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSP-KSRTIFEKSLLEQYVK------DTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCS--SEEEET-TTTEEEEHHHHHHHHH------HHSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCCC--CCEEeC-CCCcEEcHHHHHHHHH------hCCCCcCCcCCCChhhcE
Confidence 57999999995 443322 7899988888887763 246799999999877654
No 290
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=81.41 E-value=0.76 Score=50.00 Aligned_cols=58 Identities=22% Similarity=0.454 Sum_probs=36.6
Q ss_pred ccCCCCCCcccCCCccC-CCcccc---CCCchhhhhhHhHhHHhhhh-----cccCCCCCCCCCCCc
Q 004082 4 EGEKTCPLCAEEMDLTD-QQLKPC---KCGYEICVWCWHHIMDMAEK-----EETEGRCPACRSPYD 61 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD-~~F~PC---~CGYQIC~fC~hrI~~~~~k-----~~~~grCPACRr~Yd 61 (775)
|+..+|+||++.+...+ ..-+.| +||..+-.-|..+=.....+ +-.-|.||-||.+..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45679999999986423 233557 59887767776654321100 011378999999665
No 291
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.61 E-value=1.2 Score=45.17 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=39.7
Q ss_pred cCCCCCCcccCCCccCCCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccc
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~-CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~ 64 (775)
.-..|.+|.+-+-. =+-|+ |+.++=..|.++.. +...+.+||.|+.++.-+.
T Consensus 179 ~i~~C~iC~~iv~~----g~~C~~C~~~~H~~C~~~~~----~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQ----GQSCETCGIRMHLPCVAKYF----QSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSS----CEECSSSCCEECHHHHHHHT----TTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhC----CcccCccChHHHHHHHHHHH----HhCCCCCCCCCCCCCCCCC
Confidence 46789999999863 36676 88887788888875 3445679999999887653
No 292
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=75.28 E-value=0.95 Score=37.80 Aligned_cols=25 Identities=24% Similarity=0.761 Sum_probs=20.9
Q ss_pred cCCCccccccCCCCCCCCCCcccccC
Q 004082 195 GTTKYCHAWLRNVPCTNPDCLYLHEV 220 (775)
Q Consensus 195 GTTKYCssFLR~~~C~NpdC~YLHE~ 220 (775)
+.+.-|..||+| .|.+++|.|+|..
T Consensus 40 ~~~~vC~~flkG-~C~r~~C~y~H~~ 64 (70)
T 3d2q_A 40 NTVTVCMDYIKG-RCSREKCKYFHPP 64 (70)
T ss_dssp TEEEBCHHHHTT-CCCCTTCCSBCCC
T ss_pred CcceeccccCcC-CCCCCCcCeeCCH
Confidence 345569999996 7999999999976
No 293
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.14 E-value=5.7 Score=44.25 Aligned_cols=58 Identities=21% Similarity=0.419 Sum_probs=44.8
Q ss_pred cccCEEEEeCCCCCCChHHHHHHHhhhcCCcceeEEEEeecCCccccccCCCceEEEEEeCCHHHHHHHHHHhc
Q 004082 108 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 181 (775)
Q Consensus 108 IQrNLVYVvGLp~~iaeEDLLr~~EyFGQYGKI~KIvI~rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAIqaLD 181 (775)
..|..||+.++|..+...+|. +.|..||.| .|.-.- .-.|||.|.+.+.|..+++++.
T Consensus 437 ~~R~~vl~v~f~~~~~~~~i~---~~fs~fg~v-~V~wid------------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 437 PKRDHVLHVTFPKEWKTSDLY---QLFSAFGNI-QISWID------------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCGGGEEEEECCTTCCHHHHH---HHGGGGCCC-EEEECS------------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CCcCcEEEEeCCCCCCHHHHH---HHHHhcCCE-EEEEEc------------CCeEEEEECCHHHHHHHHHHHH
Confidence 345668888899999988886 899999954 332221 1258999999999999999985
No 294
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.28 E-value=2 Score=36.43 Aligned_cols=24 Identities=25% Similarity=0.521 Sum_probs=14.0
Q ss_pred CccccccCCCCCCCCCCcccccCC
Q 004082 198 KYCHAWLRNVPCTNPDCLYLHEVG 221 (775)
Q Consensus 198 KYCssFLR~~~C~NpdC~YLHE~g 221 (775)
.-|..||+.-.|.+++|.|+|...
T Consensus 39 ~~C~~f~~~G~C~~~~C~f~H~~~ 62 (77)
T 2d9n_A 39 PECYFYSKFGECSNKECPFLHIDP 62 (77)
T ss_dssp CBCHHHHHTCCCCCSSCSSBCCCT
T ss_pred CCCcccCCCCccCCCCeeccCCCc
Confidence 346666664456666666666553
No 295
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=68.25 E-value=0.58 Score=42.65 Aligned_cols=41 Identities=29% Similarity=0.714 Sum_probs=32.9
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
..||.|--+|+.++ ||..|..|-..+. ..++||-|..+...
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~-------~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEFIE-------MKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCEEE-------EEEECTTTCSBCEE
T ss_pred ccCccCCCcceecC--------CEEECccccchhh-------ccccCcchhhHHHH
Confidence 68999999998754 5556778888774 57899999997764
No 296
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=67.49 E-value=1.1 Score=45.58 Aligned_cols=31 Identities=29% Similarity=0.727 Sum_probs=24.6
Q ss_pred CCCccccccCCCCCCCCCCcccccCCCCCCC
Q 004082 196 TTKYCHAWLRNVPCTNPDCLYLHEVGSQEDS 226 (775)
Q Consensus 196 TTKYCssFLR~~~C~NpdC~YLHE~g~~~Ds 226 (775)
....|.+|.||..+.-.+|.|+|++..+.|.
T Consensus 69 ~~~~C~ffakG~C~~G~~C~y~H~lPt~~d~ 99 (240)
T 3u1l_A 69 QLFFCLFFAKGMCCLGPKCEYLHHIPDEEDI 99 (240)
T ss_dssp CCSBCHHHHTTCCSCGGGCSSBBSCCCHHHH
T ss_pred CCeEcCccccCCCCCCCCCCccCCCCCccch
Confidence 4568999999866666899999999865443
No 297
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=65.13 E-value=1.1 Score=39.34 Aligned_cols=41 Identities=27% Similarity=0.719 Sum_probs=32.7
Q ss_pred CCCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
..||.|--+|+.+.. |..|..|-..+. .+++||-|.++...
T Consensus 3 ~~CP~C~~~l~~~~~--------~~~C~~C~~~~~-------~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--------TAHCETCAKDFS-------LQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--------EEECTTTCCEEE-------EEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--------ceECccccccCC-------CcccCcchhhHHHH
Confidence 689999999986544 556788888874 46799999998865
No 298
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=64.13 E-value=2 Score=36.33 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=11.7
Q ss_pred ccccccCCCCCCCCCCcccccCC
Q 004082 199 YCHAWLRNVPCTNPDCLYLHEVG 221 (775)
Q Consensus 199 YCssFLR~~~C~NpdC~YLHE~g 221 (775)
-|.+||++-.|.+++|.|+|...
T Consensus 46 ~C~~f~~~G~C~~~~C~y~H~~p 68 (72)
T 2rhk_C 46 ECYFYSKFGECSNKECPFLHIDP 68 (72)
T ss_dssp BCHHHHHHSCCSBTTCCSBCCCC
T ss_pred cccccCCCCCCCCCCeeccCCCc
Confidence 45555554445555555555443
No 299
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=62.24 E-value=2.3 Score=37.01 Aligned_cols=26 Identities=31% Similarity=0.683 Sum_probs=21.8
Q ss_pred cCCCccccccCCCCCCCCCCcccccCC
Q 004082 195 GTTKYCHAWLRNVPCTNPDCLYLHEVG 221 (775)
Q Consensus 195 GTTKYCssFLR~~~C~NpdC~YLHE~g 221 (775)
++.--|..||||. |.+.+|.|+|-..
T Consensus 41 ~~~~vC~dflkG~-C~r~~C~y~H~~~ 66 (83)
T 3d2n_A 41 GRVIACFDSLKGR-CSRENCKYLHPPP 66 (83)
T ss_dssp TEEECCHHHHTTC-CCCSSCSSCCCCH
T ss_pred CceeehhHhhhcc-ccCCCcceeCChH
Confidence 3445799999985 9999999999874
No 300
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=60.54 E-value=3.6 Score=35.84 Aligned_cols=23 Identities=30% Similarity=0.879 Sum_probs=19.8
Q ss_pred ccccccCCCCCCCC--CCcccccCCC
Q 004082 199 YCHAWLRNVPCTNP--DCLYLHEVGS 222 (775)
Q Consensus 199 YCssFLR~~~C~Np--dC~YLHE~g~ 222 (775)
.|..|||| .|.+. +|.|+|....
T Consensus 11 VCr~FlrG-~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 11 VCREFQRG-TCSRPDTECKFAHPSKS 35 (83)
T ss_dssp BCTTGGGT-CCCSCTTTCSSBCCCTT
T ss_pred hcHHHhcC-CCCCCCCCCCCcCCCcc
Confidence 49999995 49998 9999999863
No 301
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.31 E-value=3.1 Score=37.17 Aligned_cols=26 Identities=23% Similarity=0.712 Sum_probs=21.3
Q ss_pred cCCCccccccCCCCCCCCCCcccccCC
Q 004082 195 GTTKYCHAWLRNVPCTNPDCLYLHEVG 221 (775)
Q Consensus 195 GTTKYCssFLR~~~C~NpdC~YLHE~g 221 (775)
+++--|..||+| .|.+.+|.|+|-..
T Consensus 54 ~~~~vC~~flkG-~C~r~~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYIKG-RCMREKCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHHHT-CCCCTTCCSBCCCH
T ss_pred CccccchhhccC-CCCCCCcCccCChH
Confidence 344469999996 89999999999763
No 302
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=54.27 E-value=3.3 Score=36.63 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=20.8
Q ss_pred CCCccccccCCCCCCCCCCcccccCC
Q 004082 196 TTKYCHAWLRNVPCTNPDCLYLHEVG 221 (775)
Q Consensus 196 TTKYCssFLR~~~C~NpdC~YLHE~g 221 (775)
+.--|..||+| .|.+++|.|+|-+.
T Consensus 50 ~~~vC~dflkG-~C~r~~Cky~H~~~ 74 (89)
T 2rpp_A 50 RVIACFDSLKG-RCSRENCKYLHPPT 74 (89)
T ss_dssp BEEBCHHHHHT-CCCCTTCCSBCCCH
T ss_pred ceeeehhhhhC-cCCCCCcceecCHH
Confidence 34569999997 59999999999873
No 303
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=53.97 E-value=5 Score=38.60 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=38.1
Q ss_pred cCCCCCCcccCCCccCCCccccC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 004082 5 GEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (775)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~-CGYQIC~fC~hrI~~~~~k~~~~grCPACRr 58 (775)
++..|.+|..+|.+.+..-..|. |.+.||.-|=..+. .+..-.|-.|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~-----~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP-----EEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS-----SSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC-----CCCcEeeHHHHH
Confidence 57899999999999988899998 99999999975442 234556666643
No 304
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=48.23 E-value=11 Score=31.08 Aligned_cols=27 Identities=22% Similarity=0.666 Sum_probs=23.5
Q ss_pred CCCccccccCCCCCCC-CCCcccccCCC
Q 004082 196 TTKYCHAWLRNVPCTN-PDCLYLHEVGS 222 (775)
Q Consensus 196 TTKYCssFLR~~~C~N-pdC~YLHE~g~ 222 (775)
.|+-|..|++.-.|.. ..|.|+|...+
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 5778999998889996 89999999854
No 305
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=46.62 E-value=1.3 Score=51.83 Aligned_cols=32 Identities=13% Similarity=-0.083 Sum_probs=23.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEE
Q 004082 160 TCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKAC 193 (775)
Q Consensus 160 rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LRAS 193 (775)
+|+.-+.=.+.++|.+.|...-+.. .+++=|=
T Consensus 222 ggy~L~cda~n~~aV~~lr~~K~Rp--~kP~avm 253 (772)
T 4g9i_A 222 GGIHLACDAANEEVVAELRRRTFRP--QKPFAIM 253 (772)
T ss_dssp SSBEEECCTTCHHHHHHHHHHTTCS--SSCCEEE
T ss_pred CeeEEEEecCCHHHHHHHHHhhCCC--CCCcEEE
Confidence 4566777888899999999887765 3555443
No 306
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=46.17 E-value=6.8 Score=32.61 Aligned_cols=22 Identities=27% Similarity=0.768 Sum_probs=18.8
Q ss_pred ccccccCCCCCCCC--CCcccccCC
Q 004082 199 YCHAWLRNVPCTNP--DCLYLHEVG 221 (775)
Q Consensus 199 YCssFLR~~~C~Np--dC~YLHE~g 221 (775)
-|..||+|. |.+. +|.|+|+..
T Consensus 8 vC~~f~~G~-C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 8 VCREYQRGN-CNRGENDCRFAHPAD 31 (70)
T ss_dssp BCHHHHTTC-CSSCTTTCSSBCCCT
T ss_pred hCHHHhcCC-CCCCCCCCCCccCcc
Confidence 499999977 9987 699999875
No 307
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.72 E-value=3.6 Score=36.78 Aligned_cols=23 Identities=30% Similarity=0.761 Sum_probs=19.5
Q ss_pred ccccccCCCCCCCC--CCcccccCCC
Q 004082 199 YCHAWLRNVPCTNP--DCLYLHEVGS 222 (775)
Q Consensus 199 YCssFLR~~~C~Np--dC~YLHE~g~ 222 (775)
.|..||||. |.+. +|.|+|+...
T Consensus 22 VCr~FlrG~-C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 22 VCREFQRGN-CARGETDCRFAHPADS 46 (98)
T ss_dssp BCSHHHHTC-CSSHHHHCSSBCCSSC
T ss_pred hhHHHhcCc-CCCCCCCCCCcCCchh
Confidence 499999955 9997 5999999864
No 308
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.83 E-value=11 Score=31.93 Aligned_cols=26 Identities=38% Similarity=0.945 Sum_probs=21.6
Q ss_pred CCCccccccCCCCCCC-CCCcccccCCC
Q 004082 196 TTKYCHAWLRNVPCTN-PDCLYLHEVGS 222 (775)
Q Consensus 196 TTKYCssFLR~~~C~N-pdC~YLHE~g~ 222 (775)
.+.-|.+||+|. |.+ .+|.|+|++..
T Consensus 9 k~~~C~~fl~G~-C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 9 KTVVCKHWLRGL-CKKGDQCEFLHEYDM 35 (77)
T ss_dssp TTSBCHHHHTTC-CSCTTSSSSBCSCCT
T ss_pred cceeCHhHccCc-CCCCCCCCCcccccc
Confidence 456799999955 888 78999999864
No 309
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=43.23 E-value=1.6 Score=50.36 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=22.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCCccCCeEEEEE
Q 004082 160 TCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKAC 193 (775)
Q Consensus 160 rgsAYVTFs~~EDA~rAIqaLDGs~LdGR~LRAS 193 (775)
++++.+.=...++|.+-|..+-+.. .+++-+-
T Consensus 133 ggYgL~cda~n~~AV~rL~~~K~Rp--~KPlavm 164 (657)
T 3ttc_A 133 GGFHLACDARNSNAVATLRARKHRP--AKPLAVM 164 (657)
T ss_dssp SSEEEEEETTCHHHHHHHHHHTTCS--SSCCCEE
T ss_pred ceeEEEeecCCHHHHHHHHHHhCCC--CCCEEEE
Confidence 4567777777888999998887765 3554443
No 310
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.06 E-value=9.6 Score=35.83 Aligned_cols=37 Identities=24% Similarity=0.680 Sum_probs=28.9
Q ss_pred ccCCCCCCcccCCCccCCCccccC-CCchhhhhhHhHh
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHI 40 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~-CGYQIC~fC~hrI 40 (775)
+++..|.+|..+|...+..=..|. |.+.||.-|=..+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 456899999999987766667776 8888888776654
No 311
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=42.39 E-value=6.9 Score=45.97 Aligned_cols=53 Identities=23% Similarity=0.493 Sum_probs=31.9
Q ss_pred cCCCCCCcccCC-CccCCCc----cccC-CCchhh---hhhHhHhHHhhhhccc--CCCCCCCCCCCcc
Q 004082 5 GEKTCPLCAEEM-DLTDQQL----KPCK-CGYEIC---VWCWHHIMDMAEKEET--EGRCPACRSPYDK 62 (775)
Q Consensus 5 ~d~~CPLC~Eel-D~tD~~F----~PC~-CGYQIC---~fC~hrI~~~~~k~~~--~grCPACRr~Yde 62 (775)
|--+||-|..|| |+.|+.| -.|+ ||-+.= .-=|+|- ++.| =..||+|+++|.+
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~-----~TsM~~F~mC~~C~~EY~d 173 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRA-----KTSMKVFPMCEKCSREYHD 173 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGG-----GBGGGGSCCCHHHHHHHTC
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCC-----CCccccCCCCHHHHHHhcC
Confidence 346899999986 8999886 3577 664410 0001222 1222 2458888888865
No 312
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=41.92 E-value=7.5 Score=34.38 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=20.4
Q ss_pred ccccccCCCCCCCC--CCcccccCCCC
Q 004082 199 YCHAWLRNVPCTNP--DCLYLHEVGSQ 223 (775)
Q Consensus 199 YCssFLR~~~C~Np--dC~YLHE~g~~ 223 (775)
.|..||||. |.+. +|.|+|.....
T Consensus 19 VCrdFlrG~-C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 19 VCRQFQRGT-CSRSDEECKFAHPPKSC 44 (89)
T ss_dssp BCHHHHHTC-CCCCTTTSSSBCCCSSS
T ss_pred hchHHhcCC-CCCCCCCCCCcCCCccc
Confidence 599999955 9997 89999998653
No 313
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=41.22 E-value=10 Score=31.96 Aligned_cols=26 Identities=38% Similarity=0.893 Sum_probs=21.6
Q ss_pred CCCccccccCCCCCCC-CCCcccccCCC
Q 004082 196 TTKYCHAWLRNVPCTN-PDCLYLHEVGS 222 (775)
Q Consensus 196 TTKYCssFLR~~~C~N-pdC~YLHE~g~ 222 (775)
.+.-|..||+| .|.+ .+|.|+|++..
T Consensus 15 k~~vCk~fl~G-~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 15 KTVVCKHWLRG-LCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCSBCHHHHTT-CCCCGGGSSSBCSCCT
T ss_pred cCeeCHHHhcC-CCCCCCCCCCcccccc
Confidence 45679999995 5888 79999999754
No 314
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.30 E-value=9.3 Score=35.12 Aligned_cols=28 Identities=36% Similarity=0.959 Sum_probs=18.7
Q ss_pred cC-CCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcccc
Q 004082 26 CK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (775)
Q Consensus 26 C~-CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Ydee~ 64 (775)
|. |||.+ -.++ ....+||.|+...-+.+
T Consensus 70 C~~CG~~F----~~~~-------~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 70 CRKCGFVF----KAEI-------NIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp BTTTCCBC----CCCS-------SCCSSCSSSCCCCBCCC
T ss_pred hhhCcCee----cccC-------CCCCCCcCCCCCccCCc
Confidence 54 89984 1233 35689999999765543
No 315
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=39.32 E-value=15 Score=29.62 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=7.6
Q ss_pred CCCcccCCCccCCCccc
Q 004082 9 CPLCAEEMDLTDQQLKP 25 (775)
Q Consensus 9 CPLC~EelD~tD~~F~P 25 (775)
|--|--+|+.+++...|
T Consensus 6 C~rCg~~fs~~el~~lP 22 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVLP 22 (48)
T ss_dssp CCCTTTTCCCCCSCCCS
T ss_pred eeccCCCccHHHHhhCC
Confidence 44444444444444433
No 316
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=37.79 E-value=15 Score=33.61 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=30.9
Q ss_pred CCCCcccCCCccCCCccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCCCCcc
Q 004082 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (775)
Q Consensus 8 ~CPLC~EelD~tD~~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr~Yde 62 (775)
.|+.|--++.+- -+-=||..-+|.-|...+. ...+..||.||.+...
T Consensus 3 fC~~C~~Pi~iy---gRmIPCkHvFCydCa~~~~-----~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVY---GRMIPCKHVFCYDCAILHE-----KKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEE---EEEETTCCEEEHHHHHHHH-----HTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEE---eeeccccccHHHHHHHHHH-----hccCCCCcCcCCeeee
Confidence 488888888652 3334566766666655542 1357889999998753
No 317
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=36.68 E-value=40 Score=30.13 Aligned_cols=53 Identities=23% Similarity=0.555 Sum_probs=34.6
Q ss_pred CcccCCCCCCcccCCCccCCCccccCC--CchhhhhhHhH-hHHhhhhcccCCCCCCCCC
Q 004082 2 SDEGEKTCPLCAEEMDLTDQQLKPCKC--GYEICVWCWHH-IMDMAEKEETEGRCPACRS 58 (775)
Q Consensus 2 sde~d~~CPLC~EelD~tD~~F~PC~C--GYQIC~fC~hr-I~~~~~k~~~~grCPACRr 58 (775)
.+..-..|-||-|.| .|.+|.-||- +..+|.-|-.. |+.+ ....+-.||.=.|
T Consensus 11 ~~~a~l~CtlC~erL--EdtHFVQCPsv~~HkFCFpCsr~sIk~q--~~~~EvyCPSG~k 66 (93)
T 2cs3_A 11 ANSGPLCCTICHERL--EDTHFVQCPSVPSHKFCFPCSRESIKAQ--GATGEVYCPSGEK 66 (93)
T ss_dssp CSCCSCCCSSSCSCC--SSTTSEECSSCSSCEECHHHHHHHHHHH--HSSSCCCCTTSSC
T ss_pred CCCCeeEeecchhhh--ccCceeeCCCccCCeeeccccHHHHHhc--CCCCcEECCCCCc
Confidence 344457899999998 5789999995 66666666553 3332 1234556775433
No 318
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=36.23 E-value=1.9e+02 Score=29.78 Aligned_cols=136 Identities=16% Similarity=0.270 Sum_probs=69.5
Q ss_pred cccCEEEEeCCCCCCC-h----HHHHHH--HhhhcCCcceeEEEEe---ecCCccccccCCCceEEEEEeCCHHHHHHHH
Q 004082 108 IQRNLVYIVGLPLNLG-D----EDLLQR--REYFGQYGKVLKVSMS---RTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 177 (775)
Q Consensus 108 IQrNLVYVvGLp~~ia-e----EDLLr~--~EyFGQYGKI~KIvI~---rd~~~~~qq~p~~rgsAYVTFs~~EDA~rAI 177 (775)
++++.|-|+|+|.... . |.|+.. .|-|-.-|+=.+|.|- |.........+.++. .-|.|....+=++-+
T Consensus 50 iRr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~-IIvK~~~~~~KErIL 128 (233)
T 2yko_A 50 VKRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRH-IIVRFTKVEMKEKML 128 (233)
T ss_dssp HTTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCC-EEEEESSHHHHHHHH
T ss_pred hcccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCe-EEEEecccccHHHHH
Confidence 4689999999999875 1 223322 4667766654444442 322111122334554 688888876655555
Q ss_pred HHh---cCCccCCeEEEEE--ecC--CCcccc------ccCCCCCCCCCCcccccC-----CCCCCCccHHHHHhhhcc-
Q 004082 178 QSV---HGFVLEGKSLKAC--FGT--TKYCHA------WLRNVPCTNPDCLYLHEV-----GSQEDSFTKDEIISAYTR- 238 (775)
Q Consensus 178 qaL---DGs~LdGR~LRAS--fGT--TKYCss------FLR~~~C~NpdC~YLHE~-----g~~~DsfTKeem~~~~~~- 238 (775)
++. ....+.|.+||++ |.. -+-.-. .|++... .|-.+|-=-+ |.-.---+|+++...-+.
T Consensus 129 kaaR~k~~vtykG~pIrlsaDfSaeTLq~RRew~~Ifk~Lk~knl-qpRilyPakLsf~~eGeiksF~dkqkl~efi~~~ 207 (233)
T 2yko_A 129 RAAREKGRVTLKGKPIRLTVDLSAETLQARREWGPIFNILKEKNF-QPRISYPAKLSFISEGEIKYFIDKQMLRDFVTTR 207 (233)
T ss_dssp HHHHTTSCEEETTEEEEEEECCCHHHHHHHHHTHHHHHHHHHTTC-CCEEETTTEEEEESSSSEEEESSHHHHHHHHTTC
T ss_pred HHHHHhcccccCCCceEEeCCCCHHHHHHHHHHhHHHHHHHHcCC-CcccccccceEEEEcCeEeecCCHHHHHHHHhcC
Confidence 554 4567899999865 321 122222 3555433 3555554222 322223366776665443
Q ss_pred ccccccc
Q 004082 239 SRVQQIT 245 (775)
Q Consensus 239 ~~~~~~~ 245 (775)
..+|+++
T Consensus 208 p~l~e~l 214 (233)
T 2yko_A 208 PALKELL 214 (233)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3344443
No 319
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.26 E-value=19 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.718 Sum_probs=24.0
Q ss_pred ccCCCCCCcccCCCccCCCccccC-CCchhhhhh
Q 004082 4 EGEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWC 36 (775)
Q Consensus 4 e~d~~CPLC~EelD~tD~~F~PC~-CGYQIC~fC 36 (775)
+.+..|.+|-+.|-+-=..-.+|. |.+.||..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 567899999999976444556666 666666665
No 320
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=31.12 E-value=22 Score=31.16 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=15.1
Q ss_pred CCCCCccc------CCCccCCCccccC-CCch
Q 004082 7 KTCPLCAE------EMDLTDQQLKPCK-CGYE 31 (775)
Q Consensus 7 ~~CPLC~E------elD~tD~~F~PC~-CGYQ 31 (775)
-+||+|++ ++|+.-..+-||. ||..
T Consensus 18 WVCpICsfsN~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EECTTTCCEEEESSCCCTTCSSCCBCTTTCCB
T ss_pred eECccccccCcCccccCCCCCCCCcccccCcc
Confidence 57999993 3444335556665 5554
No 321
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=27.57 E-value=13 Score=30.67 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=0.0
Q ss_pred CCCccccccCCCCCCC-CCCcccccCCC
Q 004082 196 TTKYCHAWLRNVPCTN-PDCLYLHEVGS 222 (775)
Q Consensus 196 TTKYCssFLR~~~C~N-pdC~YLHE~g~ 222 (775)
.|+-|..|+..-.|.. ..|.|+|...+
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ----------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3577998887778988 89999998754
No 322
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=24.28 E-value=12 Score=33.46 Aligned_cols=32 Identities=31% Similarity=0.787 Sum_probs=17.9
Q ss_pred CccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 004082 22 QLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (775)
Q Consensus 22 ~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr 58 (775)
-++||+||-+ |-... .++ +..+.-..||.|--
T Consensus 22 y~ypCrCGd~---F~Ite-edL-e~ge~iv~C~sCSL 53 (89)
T 2jr7_A 22 YFYPCPCGDN---FSITK-EDL-ENGEDVATCPSCSL 53 (89)
T ss_dssp EEEECTTSSE---EEEEH-HHH-HHTCCEEECTTTCC
T ss_pred EEEcCCCCCE---EEECH-HHH-hCCCEEEECCCCcc
Confidence 4699999987 32221 111 11223367999943
No 323
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=23.92 E-value=15 Score=32.43 Aligned_cols=32 Identities=31% Similarity=0.791 Sum_probs=17.7
Q ss_pred CccccCCCchhhhhhHhHhHHhhhhcccCCCCCCCCC
Q 004082 22 QLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (775)
Q Consensus 22 ~F~PC~CGYQIC~fC~hrI~~~~~k~~~~grCPACRr 58 (775)
-++||+||-+ |-... .++ +..+.-..||.|--
T Consensus 29 y~y~CrCGd~---F~it~-edL-~~ge~iv~C~sCSL 60 (83)
T 1wge_A 29 YFYPCPCGDN---FAITK-EDL-ENGEDVATCPSCSL 60 (83)
T ss_dssp EEECCSSSSC---EEEEH-HHH-HTTCCEEECTTTCC
T ss_pred EEEeCCCCCE---EEECH-HHH-hCCCEEEECCCCce
Confidence 3699999887 32221 111 11223356999944
No 324
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=22.55 E-value=2.4e+02 Score=25.50 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=48.4
Q ss_pred ccCEEEEeCCCCCCCh-----HHHHHH--HhhhcCCcceeEEEE---eecCCccccccCCCceEEEEEeCCHHH---HHH
Q 004082 109 QRNLVYIVGLPLNLGD-----EDLLQR--REYFGQYGKVLKVSM---SRTAAGVIQQFPNNTCSVYITYSKEEE---AVR 175 (775)
Q Consensus 109 QrNLVYVvGLp~~iae-----EDLLr~--~EyFGQYGKI~KIvI---~rd~~~~~qq~p~~rgsAYVTFs~~ED---A~r 175 (775)
+++.|-|+|+|+...+ |.|+.. .|-|-.-|+-.+|.| .+.........+.++. .-|.|....+ -.+
T Consensus 2 Rr~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRh-IIvK~~~~~~KErILk 80 (100)
T 2w7a_A 2 AMGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRH-IIVRFTKVEMKEKMLR 80 (100)
T ss_dssp CTTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCE-EEEEESCHHHHHHHHH
T ss_pred CccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCe-EEEEecccccHHHHHH
Confidence 4788999999997332 334432 455655554344433 2322211122334554 6788887655 444
Q ss_pred HHHHhcCCccCCeEEEEE
Q 004082 176 CIQSVHGFVLEGKSLKAC 193 (775)
Q Consensus 176 AIqaLDGs~LdGR~LRAS 193 (775)
|-..-....+.|.+||.+
T Consensus 81 aar~k~~vtykg~pirls 98 (100)
T 2w7a_A 81 AAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHHHCCEEETTEEEEEE
T ss_pred HHHHhCceeeCCcceeec
Confidence 555555677899999975
No 325
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=21.20 E-value=31 Score=37.38 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=22.8
Q ss_pred cCCCccCCCccccCC-CchhhhhhHhHhHH
Q 004082 14 EEMDLTDQQLKPCKC-GYEICVWCWHHIMD 42 (775)
Q Consensus 14 EelD~tD~~F~PC~C-GYQIC~fC~hrI~~ 42 (775)
.++|.+|...+-|.| |-.||.-||..+..
T Consensus 114 FDID~~d~diRtC~C~~~~iC~kC~~~~~~ 143 (366)
T 1v33_A 114 FDIDAKDLPLRRCEHEPGTVCPICLNDAKE 143 (366)
T ss_dssp EEEEGGGCSSCSSCSCTTCCCHHHHHHHHH
T ss_pred EEecCCcCCcCccCCCCcchHHHHHHHHHH
Confidence 356888888888988 67899999975543
Done!