Query 004083
Match_columns 775
No_of_seqs 229 out of 558
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 17:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2232 Ceramidases [Signal tr 100.0 9E-203 2E-207 1619.3 53.9 708 15-774 17-734 (734)
2 PTZ00487 ceramidase; Provision 100.0 2E-192 4E-197 1648.0 74.1 676 24-774 34-715 (715)
3 PF04734 Ceramidase_alk: Neutr 100.0 3E-192 7E-197 1658.1 55.2 671 29-774 1-674 (674)
4 COG3356 Predicted membrane pro 97.4 0.003 6.4E-08 73.1 14.5 103 63-178 430-533 (578)
5 PF09843 DUF2070: Predicted me 97.2 0.0034 7.3E-08 63.6 11.1 102 64-178 60-163 (179)
6 PF01835 A2M_N: MG2 domain; I 94.8 0.3 6.5E-06 44.0 10.3 77 664-753 8-86 (99)
7 PF10342 GPI-anchored: Ser-Thr 57.9 1.3E+02 0.0028 26.3 10.3 86 661-773 3-93 (93)
8 PF10633 NPCBM_assoc: NPCBM-as 53.9 38 0.00082 29.3 5.9 22 730-751 51-74 (78)
9 PTZ00397 macrophage migration 48.4 39 0.00084 31.6 5.5 45 76-122 54-103 (116)
10 PF01282 Ribosomal_S24e: Ribos 42.8 47 0.001 29.8 4.8 35 91-127 11-45 (84)
11 TIGR03769 P_ac_wall_RPT actino 42.7 21 0.00046 27.8 2.3 24 734-760 6-29 (41)
12 PF14552 Tautomerase_2: Tautom 34.7 48 0.0011 29.6 3.6 46 77-124 26-76 (82)
13 PF12103 Lipl32: Surface lipop 29.0 1.2E+02 0.0026 30.8 5.5 89 670-760 63-166 (182)
14 PRK10301 hypothetical protein; 28.5 2.3E+02 0.005 27.2 7.4 7 671-677 46-52 (124)
15 PF15418 DUF4625: Domain of un 25.6 1.2E+02 0.0026 29.5 4.9 39 710-751 74-114 (132)
16 PTZ00450 macrophage migration 24.9 1.5E+02 0.0032 28.1 5.2 49 70-121 49-102 (113)
17 TIGR03196 pucD xanthine dehydr 24.2 3.5E+02 0.0077 33.8 9.8 98 76-176 475-573 (768)
18 PF01960 ArgJ: ArgJ family; I 21.4 3.1E+02 0.0066 31.6 7.8 48 63-120 52-101 (388)
19 cd08544 Reeler Reeler, the N-t 21.0 2.9E+02 0.0063 26.3 6.6 79 666-752 29-118 (135)
20 PRK09408 ompX outer membrane p 21.0 1.1E+02 0.0024 31.1 3.8 37 4-40 2-38 (171)
21 PF07485 DUF1529: Domain of Un 20.8 1.7E+02 0.0036 28.3 4.8 80 23-124 12-91 (123)
No 1
>KOG2232 consensus Ceramidases [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-203 Score=1619.26 Aligned_cols=708 Identities=74% Similarity=1.197 Sum_probs=683.1
Q ss_pred HHHHhhcCCCCCCCceEEEEEEEeccCCCCccccccccCCccccceeecceEEEEEEEEeCCCCEEEEEEeccccccHHH
Q 004083 15 LLFIQNIGGSSSASNYLIGLGSYDITGPAADVNMMGYASAEQIASGVHFRLRARTFIVAEPQGNRVVFVNLDACMASQLV 94 (775)
Q Consensus 15 ~~~~~~~~~~~~~~~l~vG~ak~DITpP~~~v~m~GYa~~~~~a~Gihd~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v 94 (775)
+++++-++.-.+.++|++|++++|||||+++|+||||+...|.+.|||.||+|||||++++.++|++||++|.+|+++.+
T Consensus 17 ~~~~~l~g~v~sts~Y~iGvG~~DiTGp~advNmMGYan~~QvasGIh~Rl~aRaFIvaep~gnRv~FVs~DagM~sq~l 96 (734)
T KOG2232|consen 17 LLFLLLGGLVFSTSQYLIGVGSYDITGPAADVNMMGYANSEQVASGIHFRLRARAFIVAEPQGNRVAFVSLDAGMASQGL 96 (734)
T ss_pred HHHHHhcCceecccceEeecccccccCChhheeeccccchhhhhchheeeeeeeeEEEecCCCceEEEEecchhhhhhhh
Confidence 45666567777888999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEecccCCCCCCCccchhcccccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEE
Q 004083 95 TIKVLERLKARYGDLYTEQNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKCIVQAHENLQPGSIYINK 174 (775)
Q Consensus 95 ~~~V~~rL~~~~G~~i~~~nViIsATHTHSgP~g~~~~~~~~l~~~Gf~~~y~~~lvd~Iv~AI~~A~~~l~Pa~l~~g~ 174 (775)
+.+|.+||+++||++|.++||.||+||||+||+||++|.+|.++++||+++.|+.++++|.++|++||+||+|++|.+.+
T Consensus 97 kleVi~RLqarYG~lY~~~NVaiSGtHTHagPgGylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnk 176 (734)
T KOG2232|consen 97 KLEVIERLQARYGNLYTEDNVAISGTHTHAGPGGYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNK 176 (734)
T ss_pred HHHHHHHHHHhhcccccccceeEecccccCCCcceeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccCCCcccccCCChhhhccCCCCCCCeeEEEEEEeCCCCeEE---EEEeeeccccccC---CCCCccc---Cch
Q 004083 175 GELLDAGVNRSPSSYLNNPAAERSKYKYDVDKEMTLIKFVNEEWGPIG---SFNWFATHGTSMS---RTNPLIS---GDN 245 (775)
Q Consensus 175 g~~~~~~~NRs~~ay~~NP~~er~~~~g~vD~~~~vLrf~~~dG~~ia---~L~nyA~HpTsl~---~~n~lIS---~D~ 245 (775)
|++.++++|||+.+|++||.+||++|+.++|++|++|||.|.++.++| +..||++|+++|+ +.|+++| +|+
T Consensus 177 g~llda~vNRSPssYL~NPa~ERsky~~d~DKemtllkfVD~q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~ 256 (734)
T KOG2232|consen 177 GELLDAGVNRSPSSYLNNPAEERSKYEYDVDKEMTLLKFVDLQWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDN 256 (734)
T ss_pred cceecccccCChhHHhcChHhhhhcCccccCceeEEEEEEeccCCccchHHHHHHHHhcccccccccCCcceeccccccc
Confidence 999999999999999999999999999999999999999999999999 5999999999999 8899999 999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcccccccccCCCCccchHHHHHhhhhcccCCCCccccchhhhhhhhh
Q 004083 246 KGAAARFMEDWFEQRGSHNGFNSPYSNNPGTDRVPRRISNLVHNPLENGNELMKLAASFERSEGRPATRSLSVASRVRNA 325 (775)
Q Consensus 246 ~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (775)
.||++++||++.+. .+.+|+++++.+|.++++|.
T Consensus 257 ~~~a~~Lle~~~~~---------------------------------------------~~~pG~~v~~~~~~~~rvr~- 290 (734)
T KOG2232|consen 257 VGYASLLLEKASNP---------------------------------------------NSMPGKSVTRSSSVARRVRN- 290 (734)
T ss_pred ccHHHHHHHHhhCc---------------------------------------------ccCCCcccccchhhhhhhhc-
Confidence 99999999998632 34578899999999999985
Q ss_pred cccCCCCCeEEEeeccCcCCCCCCCCCCccccCCCCCCCCCCcCCCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 004083 326 LKRADKPQFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNQSTCNGKNELCYGRGPGYPDEFESTRIIGERQFRKAVELF 405 (775)
Q Consensus 326 ~~~~~~~~fVaaF~qg~~GDvsPn~~g~~c~d~g~~c~~~~s~c~~~~~~~~~~GP~~~d~~e~~~iiG~~q~~~A~~l~ 405 (775)
.+++.||+||||+|+||||||++|++|.|||+|||+.+|||+|++++|+++||+++|||||++|||+||++.|++||
T Consensus 291 ---~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~Cd~~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLf 367 (734)
T KOG2232|consen 291 ---ADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPCDFNHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELF 367 (734)
T ss_pred ---ccccchhhhhhhccCCCCCcccccchhhcCCCccccccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCceeEEEEEeccceeecCCCCCCCcccccccccccchhhhhcccCCCCCcccccCCCCCChhHHHHHhhhc
Q 004083 406 NTATEQLTGKVGYKHAYVDFSNLEVGLPKRGGGTEVVKTCPAAMGFAFAAGTTDGPGAFDFKQGDDKGNPFWKLVRNVLK 485 (775)
Q Consensus 406 ~~~~~~l~g~v~~~~~~vdm~~~~v~~p~~~~~~~~~~tc~~a~G~sfaagt~Dgpg~~~f~qg~~~~~p~w~~~~~~l~ 485 (775)
++++++++|+|+++|+||||++++|.+|...+..+.++||||||||||||||+||||+|+|+||++.|||||+++|++|+
T Consensus 368 nkaSeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~vktC~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~ 447 (734)
T KOG2232|consen 368 NKASEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVVKTCPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLK 447 (734)
T ss_pred HhhHHHhcCcccceeEeeccccceeEecCcCCCccccccCcccccccccccccCCCCccccccCCcCCChHHHHHHHHHc
Confidence 99999999999999999999999999988777778899999999999999999999999999999999999999999999
Q ss_pred CCChhhhhccCCCceeecCCCCcCCCCCCCcceeEEEEEEcCEEEEecCCchhhhHHHHHHHHHHHHHHcCCCCCCCCCc
Q 004083 486 APSKEQVKCQHPKPILLDTGEMKIPYDWAPSILPVQILRIGQLVILNVPGEFTTMAGRRLRDAIKMALISGGGGQFNSNV 565 (775)
Q Consensus 486 ~p~~~~~~cq~pKpill~~G~~~~p~~w~p~~v~iqilriG~l~i~~vPgE~tt~aG~Rlr~~v~~~l~~~~~~~~~~~~ 565 (775)
.|++|+++||+||||||+||+|++||+|+|+||++||||||+|+|+++|||||||+|||||++|++++.+.+.+ .+.
T Consensus 448 ~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~QilriGql~I~aVPgEFTTMaGRRLR~avka~~~~~g~~---~~~ 524 (734)
T KOG2232|consen 448 TPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQILRIGQLVILAVPGEFTTMAGRRLRDAVKAALKSSGNS---INM 524 (734)
T ss_pred CCCHHHhcccCCCceEecccccCCCcCCCccccchheeeeccEEEEecCccceehhhHHHHHHHHHHHHhcCCC---cce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876532 578
Q ss_pred eEEEEeecCcCccccCChhhcccccceeeeeccCcChHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCccc
Q 004083 566 HIVIAGLTNTYSQYVTTFDEYQVQRYEGASTLYGPHTLSAYIQEFKKLAAALIIGQTVMPGPPPPDLLDKQISLLPPVVV 645 (775)
Q Consensus 566 ~vvv~G~aN~y~~YvtT~eeY~~q~YEg~sTlyGp~tl~a~~q~~~~La~al~~g~~~~~gp~p~d~~~~~~~~~~~v~~ 645 (775)
+|+|+||+|.|++||+|+||||+||||||||+||||||.+|||+|++|+++|..+..+++||.|||+.++|+++++||++
T Consensus 525 ~VVIaGLtN~YsqYi~T~EEYqvQRYE~ASTlyGpHtlS~Yiq~FkkLakal~~~~t~~~GPqPPdl~dk~islltpv~~ 604 (734)
T KOG2232|consen 525 HVVIAGLTNIYSQYITTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLAKALVRDETVDRGPQPPDLLDKQISLLTPVVV 604 (734)
T ss_pred EEEEeccccchhhhcccHHHHhHHHhhccccccCcchhhHHHHHHHHHHHHHhhcCCCCCCCCCchHhhhhhhccCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCC-eEEEeeCCCcceEEEEecCCC
Q 004083 646 DATPLGVKFGDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNA-WVPAYDDDDFCLKFKWSRPAK 724 (775)
Q Consensus 646 D~~p~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~-W~~v~~D~dw~t~~~W~r~~~ 724 (775)
|..|.|..||||+.|++.++.|++|+.|+|+|++|||||||++|+||++|||+...++ |+.|+||+||+|+|.|.|++.
T Consensus 605 D~tP~g~~FGdV~s~vp~k~~~r~g~~v~v~f~sanPrNdl~Te~Tf~~VEr~~~~~~tW~~vydD~~~~~rf~W~r~~k 684 (734)
T KOG2232|consen 605 DGTPIGTDFGDVKSDVPNKSYFRRGTQVKVTFRSANPRNDLMTEGTFATVERLEEGDKTWKPVYDDDDWELRFKWSRPNK 684 (734)
T ss_pred ccCccCCccccccCCCCCchhhccccEEEEEEeccCCCcccccccceeeehhhhccCceeeeeecCccceeEEEeccCcc
Confidence 9999999999999997777889999999999999999999999999999999976655 999999999999999999999
Q ss_pred CCCceEEEEEEEcCCCCCCcceeEEEeecccCCCCCeeeeEEecceEEEe
Q 004083 725 LSPQSHATVEWKIPESAVSGVYRIRHFGASKSLVGSISHFIGSSSAFVVA 774 (775)
Q Consensus 725 ~~~~s~~ti~W~ip~~~~~G~YRi~~~G~~k~~~g~~~~~~g~s~~F~v~ 774 (775)
+++.|++||+|+||+.+.||.|||||||.+|.+.|+|.+|+|+|+.|+|.
T Consensus 685 l~~~S~atieW~Ipeta~pGvYRIrhfG~~k~ilg~i~~f~Gss~aF~V~ 734 (734)
T KOG2232|consen 685 LSGFSQATIEWRIPETASPGVYRIRHFGAAKKILGSIHSFEGSSSAFVVV 734 (734)
T ss_pred ccccccceEEEecCCcCCCceEEEEeccccccccccccccccCccceEeC
Confidence 99999999999999999999999999999999999999999999999984
No 2
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=1.6e-192 Score=1648.00 Aligned_cols=676 Identities=48% Similarity=0.861 Sum_probs=638.5
Q ss_pred CCCCCceEEEEEEEeccCCCCccccccccCCccccceeecceEEEEEEEEeCCCCEEEEEEeccccccHHHHHHHHHHHH
Q 004083 24 SSSASNYLIGLGSYDITGPAADVNMMGYASAEQIASGVHFRLRARTFIVAEPQGNRVVFVNLDACMASQLVTIKVLERLK 103 (775)
Q Consensus 24 ~~~~~~l~vG~ak~DITpP~~~v~m~GYa~~~~~a~Gihd~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~ 103 (775)
.+..+.|+||++++|||||+.+++||||+.+.|+++|||||||||||||+|.+++|++||++|+++++++++++|+++|+
T Consensus 34 ~~~~~~~~aG~gk~DITpP~~~v~m~GYa~~~q~a~GvhdrLyARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~ 113 (715)
T PTZ00487 34 SSDDSSYQIGSGIYDITGPAAEVNMMGYAMPDQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVVPKLQ 113 (715)
T ss_pred cCCCCceEeEEEEEecCCCCccccccccccCCcCccceecceeEEEEEEEeCCCCEEEEEEEcccCCCHHHHHHHHHHHH
Confidence 34467799999999999998999999999999999999999999999997647899999999999999999999999999
Q ss_pred HHhC-CCCCCCcEEEEecccCCCCCCCccchhcccccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEcCccc
Q 004083 104 ARYG-DLYTEQNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKCIVQAHENLQPGSIYINKGELLDAGV 182 (775)
Q Consensus 104 ~~~G-~~i~~~nViIsATHTHSgP~g~~~~~~~~l~~~Gf~~~y~~~lvd~Iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~ 182 (775)
++|| ++|+.+||+||||||||||+++.++.+|+++.+||+++|+++|+++|++||++||++|+|++|.++++++.++++
T Consensus 114 ~~~Gi~~y~~~NVllsATHTHSGPgg~~~~~l~~~ts~Gf~~qy~~~lvdgIv~AI~~A~~nL~Pa~l~~g~g~~~~ani 193 (715)
T PTZ00487 114 EIFGPDLYTLDNVLLSGTHTHSGPAGFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQPARMYTNSGELWNSNI 193 (715)
T ss_pred HHhCcCcCChhhEEEEeeecCCCCcccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeeEEeccccc
Confidence 9999 677999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCChhhhccCCCCCCCeeEEEEEEeCCCCeEEEEEeeeccccccCCCCCcccCchHHHHHHHHHHHhhccCC
Q 004083 183 NRSPSSYLNNPAAERSKYKYDVDKEMTLIKFVNEEWGPIGSFNWFATHGTSMSRTNPLISGDNKGAAARFMEDWFEQRGS 262 (775)
Q Consensus 183 NRs~~ay~~NP~~er~~~~g~vD~~~~vLrf~~~dG~~ia~L~nyA~HpTsl~~~n~lIS~D~~G~a~~~lE~~~~~~~~ 262 (775)
|||+.+|++||++|+.+|++++|++|+||+|++.||+++|+|+|||||||+|+++|++|||||||+++++||+.+++..
T Consensus 194 NRs~~ay~~NP~~er~~y~g~vD~~m~vLrf~~~dGkpig~L~~fA~H~Tsl~~~N~lISgD~~G~Aa~~lEk~~~~~~- 272 (715)
T PTZ00487 194 NRSPTAYDNNPEEEKAMYDGNVDKNMTVLRIEDMNGNPFAAISFFAVHCTSMNNTNHLISGDNKGYASYLWEKYKNGND- 272 (715)
T ss_pred cCChhhhhcCchhhccccCCCCCCceEEEEEEcCCCCEEEEEEEEeecccccCCCCceecCchHHHHHHHHHHHhccCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975400
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCCCCccchHHHHHhhhhcccCCCCccccchhhhhhhhhcccCCCCCeEEEeeccC
Q 004083 263 HNGFNSPYSNNPGTDRVPRRISNLVHNPLENGNELMKLAASFERSEGRPATRSLSVASRVRNALKRADKPQFVSAFCQSN 342 (775)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~ 342 (775)
. .+|.++|||||+|||
T Consensus 273 ------------------------------------------------------------~----~pg~~~FVAaF~qg~ 288 (715)
T PTZ00487 273 ------------------------------------------------------------S----FPGVGPFIAAFGQSN 288 (715)
T ss_pred ------------------------------------------------------------c----CCCCCceeEEEccCC
Confidence 0 012346999999999
Q ss_pred cCCCCCCCCCCccccCCCCCCCCCCcCCCCccccccCCCCCC-CchhhHHHHHHHHHHHHHHHHhhccccccCCceeEEE
Q 004083 343 CGDVSPNVLGAFCIDSGLPCDFNQSTCNGKNELCYGRGPGYP-DEFESTRIIGERQFRKAVELFNTATEQLTGKVGYKHA 421 (775)
Q Consensus 343 ~GDvsPn~~g~~c~d~g~~c~~~~s~c~~~~~~~~~~GP~~~-d~~e~~~iiG~~q~~~A~~l~~~~~~~l~g~v~~~~~ 421 (775)
+||||||++|++|+| |+|||+++|||+|++++|+|+||++. |||++++|||+||+++|++||+++.++|+|+|+++|+
T Consensus 289 ~GDvsPn~~g~~c~~-g~~c~~~~stc~g~~~~c~~~GP~~~~d~~~~t~~iG~rq~~~A~~l~~~~~~~l~G~v~~~h~ 367 (715)
T PTZ00487 289 EGDVSPNTRGPTCRD-GIPCDYKTSTCNGTTEECWGLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPIQYRHT 367 (715)
T ss_pred cccCCCCCCCCcccc-CCcccccccccCCcccceeccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCcccccccceEEE
Confidence 999999999999999 99999999999999999999999977 7999999999999999999999888999999999999
Q ss_pred EEeccceeecCCCCCCCcccccccccccchhhhhcccCCCCCcccccCCCC--CChhHHHHHhhhcCCChhhhhccCCCc
Q 004083 422 YVDFSNLEVGLPKRGGGTEVVKTCPAAMGFAFAAGTTDGPGAFDFKQGDDK--GNPFWKLVRNVLKAPSKEQVKCQHPKP 499 (775)
Q Consensus 422 ~vdm~~~~v~~p~~~~~~~~~~tc~~a~G~sfaagt~Dgpg~~~f~qg~~~--~~p~w~~~~~~l~~p~~~~~~cq~pKp 499 (775)
|+||++++|..+.. .++...+||||||||||||||+||||.|+|+||++. +||||+.++++++.|++++++||+|||
T Consensus 368 ~~dm~~~~v~~~~~-~~~~~~~tC~aa~G~sfaAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKp 446 (715)
T PTZ00487 368 WLNFTNVSVEPPYN-SGVQVATTCRGAMGYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKP 446 (715)
T ss_pred EEeccccEeccccC-CCCCcceecccccCcccccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCc
Confidence 99999999974322 233688999999999999999999999999999875 689999999999999999999999999
Q ss_pred eeecCCCCcCCCCCCCcceeEEEEEEcCEEEEecCCchhhhHHHHHHHHHHHHHHcCCCCCCCCCceEEEEeecCcCccc
Q 004083 500 ILLDTGEMKIPYDWAPSILPVQILRIGQLVILNVPGEFTTMAGRRLRDAIKMALISGGGGQFNSNVHIVIAGLTNTYSQY 579 (775)
Q Consensus 500 ill~~G~~~~p~~w~p~~v~iqilriG~l~i~~vPgE~tt~aG~Rlr~~v~~~l~~~~~~~~~~~~~vvv~G~aN~y~~Y 579 (775)
|||++| +..||+|+|+||||||+|||+|+|+++|||||||+|||||++|++++.. +. .+++|+|+||||+|+||
T Consensus 447 iLl~~G-~~~p~~w~p~iv~iQi~riG~l~i~~~P~E~TtmaGrRlr~aV~~~~~~-~~----~~~~Vvl~G~aN~Y~~Y 520 (715)
T PTZ00487 447 ILLDVG-MVEPIPWVPDVMPIQIMTIGQIVLVAVPGEFTTMSGRRLRNTVREIIGT-SI----ENPIVLIAGLSNTYSGY 520 (715)
T ss_pred eeecCC-CCCCCCCcCceeeeEEEEEeeEEEEecCcccchhHHHHHHHHHHHHhhc-CC----CCceEEEEecccccccc
Confidence 999999 6669999999999999999999999999999999999999999999865 21 57899999999999999
Q ss_pred cCChhhcccccceeeeeccCcChHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCccccCCCCCCcccceee
Q 004083 580 VTTFDEYQVQRYEGASTLYGPHTLSAYIQEFKKLAAALIIGQTVMPGPPPPDLLDKQISLLPPVVVDATPLGVKFGDVKT 659 (775)
Q Consensus 580 vtT~eeY~~q~YEg~sTlyGp~tl~a~~q~~~~La~al~~g~~~~~gp~p~d~~~~~~~~~~~v~~D~~p~g~~fGdv~~ 659 (775)
|||+|||+.|||||||||||||||+||+|+|.+||++|+.|.++++||.|||+++++++|++||++|++|+|++||||++
T Consensus 521 vtT~EEY~~QrYEGaSTlyGp~TL~ay~q~~~~la~al~~~~~~~~Gp~Pp~~~~~~~~~~~~v~~D~~p~g~~fGdv~~ 600 (715)
T PTZ00487 521 IATFEEFQVQRYEGASTVFGPHTLGAYQQEFDKLAQSIVDGQPISPGLKPRNLYGHTWFFLPPVIVDSAPFFDDFGDLYQ 600 (715)
T ss_pred cCCHHHhhhhhhccccceeCchHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcccccCCcccCCCCCCCccCcEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEEEEEcCC
Q 004083 660 DVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATVEWKIPE 739 (775)
Q Consensus 660 ~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~ 739 (775)
||.+.+.|++|++|+|+|++||||||||+++||++|||++++++|++|+||+||+|+|+|+|+ +++.|++||+|+||+
T Consensus 601 ~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ve~~~~~~~W~~v~~D~dw~t~~~W~r~--~~~~S~~ti~W~i~~ 678 (715)
T PTZ00487 601 DVDTEKVYSNNDTVSAEFYGGNPRNNFMTESSFLTVDKLNEKNQWTTILVDGDWDTKWHWKMH--DLGFSLITIIWSIGP 678 (715)
T ss_pred cCCcccccCCCCEEEEEEEecCCCCccccCcceEEEEEecCCCceeEeccCCCcceEEEEecc--CCCceeEEEEEECCC
Confidence 996522399999999999999999999999999999999888899999999999999999998 368999999999999
Q ss_pred CCCCcceeEEEeecccC--CCCCeeeeEEecceEEEe
Q 004083 740 SAVSGVYRIRHFGASKS--LVGSISHFIGSSSAFVVA 774 (775)
Q Consensus 740 ~~~~G~YRi~~~G~~k~--~~g~~~~~~g~s~~F~v~ 774 (775)
++++|+|||+|||+||+ +.|+|+||+|+|++|+|.
T Consensus 679 ~~~~G~YRi~~~G~~k~~~~~g~i~~f~G~s~~F~v~ 715 (715)
T PTZ00487 679 TTEPGTYRITHSGYAKKNPFSQNLTPYQGISSNFKVQ 715 (715)
T ss_pred CCCCeeeEEEEeecccccccCCCceeeEEecCceEeC
Confidence 99999999999999998 799999999999999984
No 3
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=3.1e-192 Score=1658.13 Aligned_cols=671 Identities=60% Similarity=0.985 Sum_probs=474.2
Q ss_pred ceEEEEEEEeccCCCCccccccccCCccccceeecceEEEEEEEEeC-CCCEEEEEEeccccccHHHHHHHHHHHHHHhC
Q 004083 29 NYLIGLGSYDITGPAADVNMMGYASAEQIASGVHFRLRARTFIVAEP-QGNRVVFVNLDACMASQLVTIKVLERLKARYG 107 (775)
Q Consensus 29 ~l~vG~ak~DITpP~~~v~m~GYa~~~~~a~Gihd~L~ARAlvl~d~-~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~~G 107 (775)
.|+||++++|||||+.++.||||+.+.|.++|||||||||||||++. +++|+|||++|++++++.++++|+++|++++|
T Consensus 1 ~y~vG~g~~DITgP~~~v~m~GYa~~~q~a~GihdrLyARAfVl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~g 80 (674)
T PF04734_consen 1 NYLVGVGKADITGPPAGVPMMGYANRSQVATGIHDRLYARAFVLEDDDGGTRVVFVSLDLLMIPQEVRDEVRERLAAKYG 80 (674)
T ss_dssp -EEEEEEEEE----SEEEEEESS--SS-EEEEESS--EEEEEEEEESSS--EEEEEEESSS---HHHHHHHHHHHHHHST
T ss_pred CeeeeEeeeecCCCCCCcccCCCCCCCCCccceecceEEEEEEEEecCCCCEEEEEEeCccccCHHHHHHHHHHHHHhhc
Confidence 48999999999999899999999999999999999999999999942 67999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecccCCCCCCCccchhcccccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEcCcccCCCcc
Q 004083 108 DLYTEQNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKCIVQAHENLQPGSIYINKGELLDAGVNRSPS 187 (775)
Q Consensus 108 ~~i~~~nViIsATHTHSgP~g~~~~~~~~l~~~Gf~~~y~~~lvd~Iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NRs~~ 187 (775)
.+|+++||+|++|||||||+++.++++++++..||+++|+++|+++|++||++|+++|+|++|.++++++.++++|||+.
T Consensus 81 ~~y~~~nViIsaTHTHSgPgg~~~~~~~~~~~~gf~~~~~~~lv~gIv~aI~~A~~~L~pa~l~~g~g~~~~a~~NRs~~ 160 (674)
T PF04734_consen 81 ILYDEENVIISATHTHSGPGGYSHYLLYNITSGGFDPEYYDALVDGIVEAIEQAHENLQPARLGFGTGELSDANINRSPS 160 (674)
T ss_dssp TT-SGGGEEEEE--BSBEE----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHH
T ss_pred CCCChheEEEEeEecCCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeEEEecceeecCCch
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhhhccCCCCCCCeeEEEEEEeCCCCeEEEEEeeeccccccCCCCCcccCchHHHHHHHHHHHhhccCCCCCCC
Q 004083 188 SYLNNPAAERSKYKYDVDKEMTLIKFVNEEWGPIGSFNWFATHGTSMSRTNPLISGDNKGAAARFMEDWFEQRGSHNGFN 267 (775)
Q Consensus 188 ay~~NP~~er~~~~g~vD~~~~vLrf~~~dG~~ia~L~nyA~HpTsl~~~n~lIS~D~~G~a~~~lE~~~~~~~~~~~~~ 267 (775)
+|++||++||.+|++++||+|+||+|++.||+++|+|+|||||||+|+++|++||+|||||++++||+.++.
T Consensus 161 ay~~NP~~er~~y~g~vD~~~~vLrf~~~dG~~ig~L~nfAvHpTsl~~~N~lIS~D~~G~aa~~lE~~~~~-------- 232 (674)
T PF04734_consen 161 AYLRNPAEERARYDGPVDPEMTVLRFRDADGKPIGVLNNFAVHPTSLGNTNRLISGDNKGYAAYLLEKELGG-------- 232 (674)
T ss_dssp HHTT-T--T-TT-TTS---EEEEEEEEETTS-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT----------
T ss_pred hhhcCccccccccCCCcCCceeEEEEEeCCCCEEEEEEEEcccceeccCCCCeecCCcHhHHHHHHHHhhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred CCCCCCCCCCCcccccccccCCCCccchHHHHHhhhhcccCCCCccccchhhhhhhhhcccCCCCCeEEEeeccCcCCCC
Q 004083 268 SPYSNNPGTDRVPRRISNLVHNPLENGNELMKLAASFERSEGRPATRSLSVASRVRNALKRADKPQFVSAFCQSNCGDVS 347 (775)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvs 347 (775)
...++++|||||+|+|+||+|
T Consensus 233 -----------------------------------------------------------~~~~~~~fVaaFaq~n~GDvs 253 (674)
T PF04734_consen 233 -----------------------------------------------------------DLAGKPPFVAAFAQGNAGDVS 253 (674)
T ss_dssp ---------------------------------------------------------------STT-EEEEE-SS-TTEE
T ss_pred -----------------------------------------------------------cccCCCCeEEEEccCCccccc
Confidence 013368999999999999999
Q ss_pred CCCCCCccccCCCCCCCCCCcCCCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHHhhccccccCCceeEEEEEeccc
Q 004083 348 PNVLGAFCIDSGLPCDFNQSTCNGKNELCYGRGPGYPDEFESTRIIGERQFRKAVELFNTATEQLTGKVGYKHAYVDFSN 427 (775)
Q Consensus 348 Pn~~g~~c~d~g~~c~~~~s~c~~~~~~~~~~GP~~~d~~e~~~iiG~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~ 427 (775)
||+.|++|+|+|++||+++|||+++.++|+++||+ .|||||++|||+||+++|++||+++.++|.|+|+++|+||||++
T Consensus 254 PN~~g~~c~~~g~~c~~~~s~c~~~~~~~~~~Gp~-~d~~~s~~iig~rq~~~A~~l~~~~~~~~~g~v~~~~~~vdm~~ 332 (674)
T PF04734_consen 254 PNTLGPFCEDTGLPCDFEHSTCGGKNELCHGRGPG-KDMFESTRIIGERQFDKARELYDSASEELTGPVDSRHQYVDMSN 332 (674)
T ss_dssp S-SS-----------------------SSSTSSST-S-HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT
T ss_pred cccccccccccccccccccccccccccccCCCCCC-ccchHHHHHHHHHHHHHHHHHhhccCcccCCCEeEEEEEEcCCC
Confidence 99999999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCcccccccccccchhhhhcccCCCCCcccccCCC--CCChhHHHHHhhhcCCChhhhhccCCCceeecCC
Q 004083 428 LEVGLPKRGGGTEVVKTCPAAMGFAFAAGTTDGPGAFDFKQGDD--KGNPFWKLVRNVLKAPSKEQVKCQHPKPILLDTG 505 (775)
Q Consensus 428 ~~v~~p~~~~~~~~~~tc~~a~G~sfaagt~Dgpg~~~f~qg~~--~~~p~w~~~~~~l~~p~~~~~~cq~pKpill~~G 505 (775)
++|+.+ .++++...+||+|||||||||||+||||.|+|+||++ .+||||+.+++++.+|++++++||+||||||++|
T Consensus 333 ~~v~~~-~~~~~~~~~tc~~a~G~sfaAGt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G 411 (674)
T PF04734_consen 333 VTVDPP-FTGDGKTVRTCPAAMGYSFAAGTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTG 411 (674)
T ss_dssp -EE-GG-GT-TSS-EE-----EE----SSSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--T
T ss_pred eEEccC-CCCCCCcCcccccccccccccccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEecc
Confidence 999843 3344578999999999999999999999999999998 7899999999999999999999999999999999
Q ss_pred CCcCCCCCCCcceeEEEEEEcCEEEEecCCchhhhHHHHHHHHHHHHHHcCCCCCCCCCceEEEEeecCcCccccCChhh
Q 004083 506 EMKIPYDWAPSILPVQILRIGQLVILNVPGEFTTMAGRRLRDAIKMALISGGGGQFNSNVHIVIAGLTNTYSQYVTTFDE 585 (775)
Q Consensus 506 ~~~~p~~w~p~~v~iqilriG~l~i~~vPgE~tt~aG~Rlr~~v~~~l~~~~~~~~~~~~~vvv~G~aN~y~~YvtT~ee 585 (775)
++++||+|+|++|||||+|||+|+|+++|||||||+|||||++|+++|.+.+. .+++|+|+||||+|+||||||||
T Consensus 412 ~~~~p~~w~p~i~~~Qi~riG~l~i~~~P~E~TtmaGrRlr~~v~~~~~~~~~----~~~~vvi~g~sN~Y~~YvtT~EE 487 (674)
T PF04734_consen 412 EMNFPYPWVPNIVPIQIVRIGQLVIVAVPGEFTTMAGRRLREAVAEALGAAGI----DDPHVVIAGLSNGYSHYVTTPEE 487 (674)
T ss_dssp T--SSS-SS-SEEEEEEEEETTEEEEE-SSEE-HHHHHHHHHHHHHHHGGGT--------EEEEE-SBSS---EE--HHH
T ss_pred ccCCCcccCCceEEEEEEEEcCEEEEEcCCcchhHHHHHHHHHHHHHHhhcCC----CceEEEEEeeccCcccccCCHHH
Confidence 99999999999999999999999999999999999999999999999987542 36899999999999999999999
Q ss_pred cccccceeeeeccCcChHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCccccCCCCCCcccceeecCCCCC
Q 004083 586 YQVQRYEGASTLYGPHTLSAYIQEFKKLAAALIIGQTVMPGPPPPDLLDKQISLLPPVVVDATPLGVKFGDVKTDVPQNS 665 (775)
Q Consensus 586 Y~~q~YEg~sTlyGp~tl~a~~q~~~~La~al~~g~~~~~gp~p~d~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~~~~~ 665 (775)
|+.|+|||+||+||||||+||+|++.+||++|++|+++++||+|+|++++++++.++|++|++|+|++||||+.|| ++
T Consensus 488 Y~~Q~YEg~sTl~Gp~tl~a~~q~~~~la~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~--~~ 565 (674)
T PF04734_consen 488 YQVQRYEGASTLYGPHTLAAYIQEFARLARALADGEPVPPGPSPPDLSSKQISLPPGVVFDAPPLGKSFGDVLQQP--NP 565 (674)
T ss_dssp HHH--HHHHT-TT-TTHHHHHHHHHHHHHHHHHHT------------GGG--B-S--------STT--TT-EEE-----S
T ss_pred hhcCcccccceeeCHhHHHHHHHHHHHHHHHHhhcccCCCCCCCcccccccccccccCCCCCCCCCCCcCceEeCC--cC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 45
Q ss_pred cccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEEEEEcCCCCCCcc
Q 004083 666 TFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATVEWKIPESAVSGV 745 (775)
Q Consensus 666 ~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~ 745 (775)
+|++|++|+|+||+||||||||+++|||+|||++++|.|++|+||+||+|+|+|+|++.+++.|++||+|+||++++||+
T Consensus 566 ~y~~g~~v~~~F~~a~Prn~l~~~~tfl~Ver~~~~~~W~~v~~D~dw~t~f~W~r~~~~~~~S~~ti~W~ip~~~~~G~ 645 (674)
T PF04734_consen 566 SYRPGDTVSATFVGANPRNNLRLEGTFLTVERLESGGSWQTVADDADWSTRFRWKRTGSLLGTSEVTIEWEIPPDTPPGT 645 (674)
T ss_dssp EEETT-EEEEEEEE--GGG---TTS-SEEEEEEES-S--EEEEETTSTTEEEEEEEETTT--EEEEEEEEE--TT--SEE
T ss_pred ccCCCCeEEEEEeeeCCCCccCCCCCeEEEEEecCCCCeEEEEeCCCccEEEEEEecCCccccEEEEEEEECCCCCCCCC
Confidence 99999999999999999999999999999999987889999999999999999999998888999999999999999999
Q ss_pred eeEEEeecccCCCCCeeeeEEecceEEEe
Q 004083 746 YRIRHFGASKSLVGSISHFIGSSSAFVVA 774 (775)
Q Consensus 746 YRi~~~G~~k~~~g~~~~~~g~s~~F~v~ 774 (775)
|||+|||++|++.|+|+||+|+|++|+|+
T Consensus 646 YRi~~~G~~k~~~g~i~~f~G~S~~F~V~ 674 (674)
T PF04734_consen 646 YRIRHFGDAKSLFGGITPFEGTSREFTVT 674 (674)
T ss_dssp EEEEEEEEEE-TTT-EEEEEEE---EEE-
T ss_pred EEEEEEeeccCCCCCeEeEEEECCceEeC
Confidence 99999999999999999999999999995
No 4
>COG3356 Predicted membrane protein [Function unknown]
Probab=97.35 E-value=0.003 Score=73.07 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=83.4
Q ss_pred cceEEEEEEEEeCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC-CCccchhccccccc
Q 004083 63 FRLRARTFIVAEPQGNRVVFVNLDACMASQLVTIKVLERLKARYGDLYTEQNVAISGIHTHAGPG-GYLQYVVYIVTSLG 141 (775)
Q Consensus 63 d~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHSgP~-g~~~~~~~~l~~~G 141 (775)
-+..+||+++|. +++|.++|.+|.=.+..+++++|++++.+ + .+++.+..|-||.-=+ .... | ...|
T Consensus 430 g~~Gi~a~v~d~-g~~Rta~Vl~DsNNi~~~L~~~v~~~v~~-----l-v~~veV~TTDtH~vn~~~~~~---~--~pvg 497 (578)
T COG3356 430 GPGGIRAAVVDT-GDTRTAYVLFDSNNITTELREEVRKAVRD-----L-VSEVEVVTTDTHYVNGRLVLG---Y--NPVG 497 (578)
T ss_pred CcCceEEEEEec-CCeEEEEEEEeCCCCcHHHHHHHHHHHHh-----h-hcEEEEEecCCceeccccccc---c--cccc
Confidence 367789999999 89999999999999999999999998887 3 5789999999998544 2221 1 1223
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEc
Q 004083 142 FVRQSFDALVDGIEKCIVQAHENLQPGSIYINKGELL 178 (775)
Q Consensus 142 f~~~y~~~lvd~Iv~AI~~A~~~l~Pa~l~~g~g~~~ 178 (775)
.. +-.+.|.+.++.++++|.++++|+++++.+.++.
T Consensus 498 ~r-~d~~~I~~~v~~~v~~A~~dle~ve~g~~~v~v~ 533 (578)
T COG3356 498 SR-EDLGEIADEVAKAVEEAEKDLEPVEVGVRTVKVK 533 (578)
T ss_pred cc-ccHHHHHHHHHHHHHHHHhccccceeEEEEEEEE
Confidence 22 2356799999999999999999999998888875
No 5
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=97.15 E-value=0.0034 Score=63.59 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=81.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCCCCcc--chhccccccc
Q 004083 64 RLRARTFIVAEPQGNRVVFVNLDACMASQLVTIKVLERLKARYGDLYTEQNVAISGIHTHAGPGGYLQ--YVVYIVTSLG 141 (775)
Q Consensus 64 ~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHSgP~g~~~--~~~~~l~~~G 141 (775)
+.-.+|++++. +++|.++|.+|---+.+.++++|++++.+. .+.+.|..|.||+--+-... |+.++.
T Consensus 60 ~~gi~~~~v~~-~g~~~~lv~~DsNNm~~~lr~~i~~~~~~~------~d~~ev~TTDtH~~~~~~~g~~y~~vG~---- 128 (179)
T PF09843_consen 60 IGGISALVVEV-GGQRSALVLADSNNMEPGLREKIREALGDV------VDEVEVMTTDTHFVNGESGGNGYWPVGP---- 128 (179)
T ss_pred ccccEEEEEEe-CCcEEEEEEEECCCCCHHHHHHHHHHHhhh------cceeEEecCcccEEccEECCccceeccc----
Confidence 45578999999 899999999999999999999999888873 46799999999996552222 222210
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEc
Q 004083 142 FVRQSFDALVDGIEKCIVQAHENLQPGSIYINKGELL 178 (775)
Q Consensus 142 f~~~y~~~lvd~Iv~AI~~A~~~l~Pa~l~~g~g~~~ 178 (775)
.. -.+.+.+.+.+++.+|.++++|+++++.+..+.
T Consensus 129 ~~--~~~~i~~~~~~~~~~A~~~l~~v~~~~~~~~~~ 163 (179)
T PF09843_consen 129 LI--PPREIIESRREAVSEAERDLEPVEVGYKEVYVK 163 (179)
T ss_pred cC--CHHHHHHHHHHHHHHHHhcccccEEEEEEEEEE
Confidence 00 356788889999999999999999999998854
No 6
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.80 E-value=0.3 Score=44.00 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=42.9
Q ss_pred CCcccCCCeEEEEEEccCCCCC-CCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEec-CCCCCCceEEEEEEEcCCCC
Q 004083 664 NSTFKRGDMVAVTFWSACPRND-LMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSR-PAKLSPQSHATVEWKIPESA 741 (775)
Q Consensus 664 ~~~y~~g~~v~~~F~~a~Prn~-l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r-~~~~~~~s~~ti~W~ip~~~ 741 (775)
+..|+|||+|.+..+.-+..++ ......-+.|+=.+.+| ...++|.. .. .....+..+|.+|.+.
T Consensus 8 r~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g-----------~~v~~~~~~~~--~~~G~~~~~~~lp~~~ 74 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSG-----------NEVFRWSVNTT--NENGIFSGSFQLPDDA 74 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTS-----------EEEEEEEEEET--TCTTEEEEEEE--SS-
T ss_pred ccCcCCCCEEEEEEEEeccccccccccCCceEEEEECCCC-----------CEEEEEEeeee--CCCCEEEEEEECCCCC
Confidence 4489999999988774333332 12222333344333332 23455555 32 2355777899999999
Q ss_pred CCcceeEEEeec
Q 004083 742 VSGVYRIRHFGA 753 (775)
Q Consensus 742 ~~G~YRi~~~G~ 753 (775)
+.|+|+|+...+
T Consensus 75 ~~G~y~i~~~~~ 86 (99)
T PF01835_consen 75 PLGTYTIRVKTD 86 (99)
T ss_dssp --EEEEEEEEET
T ss_pred CCEeEEEEEEEc
Confidence 999999999885
No 7
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=57.86 E-value=1.3e+02 Score=26.26 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=49.5
Q ss_pred CCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCC----CeEEEeeCCCcceEEEEecCCCCCCceEEEEEEE
Q 004083 661 VPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQN----AWVPAYDDDDFCLKFKWSRPAKLSPQSHATVEWK 736 (775)
Q Consensus 661 ~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g----~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ 736 (775)
|..++.+..|+.+++++-..+ ....-++|.-..++. .+..++++-+ .+.=.+.|.
T Consensus 3 P~~~~~~~~g~~~~I~W~~~~------~~~~~~~I~L~~g~~~~~~~~~~ia~~v~---------------~~~gs~~~~ 61 (93)
T PF10342_consen 3 PTAGTVWTAGQPITITWTSDG------TDPGNVTIYLCNGNNTNLNFVQTIASNVS---------------NSDGSYTWT 61 (93)
T ss_pred CCCCCEEECCCcEEEEEeCCC------CCCcEEEEEEEcCCCCCcceeEEEEeccc---------------CCCCEEEEE
Confidence 333556788999999887643 111445666554442 2333332211 222346899
Q ss_pred cCCCCCC-cceeEEEeecccCCCCCeeeeEEecceEEE
Q 004083 737 IPESAVS-GVYRIRHFGASKSLVGSISHFIGSSSAFVV 773 (775)
Q Consensus 737 ip~~~~~-G~YRi~~~G~~k~~~g~~~~~~g~s~~F~v 773 (775)
+|.+.++ +.|+|+.. +...- .....|..|+|
T Consensus 62 ~p~~l~~~~~Y~i~~~-~~~~~-----~~~~~S~~FtI 93 (93)
T PF10342_consen 62 IPSDLPSGGDYFIQIV-NSSNN-----TIYAYSPRFTI 93 (93)
T ss_pred cCCCCCCCCcEEEEEE-ECCCC-----ceEEECccEEC
Confidence 9887665 89999998 43222 23456677765
No 8
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=53.90 E-value=38 Score=29.26 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=14.4
Q ss_pred EEEEEEE--cCCCCCCcceeEEEe
Q 004083 730 HATVEWK--IPESAVSGVYRIRHF 751 (775)
Q Consensus 730 ~~ti~W~--ip~~~~~G~YRi~~~ 751 (775)
.++++|. +|.++.+|+|+|...
T Consensus 51 s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 51 SVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp EEEEEEEEEE-TT--SEEEEEEEE
T ss_pred EEEEEEEEECCCCCCCceEEEEEE
Confidence 4566665 588999999999864
No 9
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=48.38 E-value=39 Score=31.57 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=35.9
Q ss_pred CCCEEEEEEeccccc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 004083 76 QGNRVVFVNLDACMA-SQ----LVTIKVLERLKARYGDLYTEQNVAISGIHT 122 (775)
Q Consensus 76 ~~~rvv~Vs~Dl~~i-~~----~v~~~V~~rL~~~~G~~i~~~nViIsATHT 122 (775)
....+++|.+.+++. .. .+..+|-+.|++.+| +++++|+|.-+=.
T Consensus 54 ~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lg--i~~~rv~I~f~~~ 103 (116)
T PTZ00397 54 SHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLK--VKSERVYIEFKDC 103 (116)
T ss_pred CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEC
Confidence 456899999997664 33 477888888999999 9999999987543
No 10
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=42.84 E-value=47 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 004083 91 SQLVTIKVLERLKARYGDLYTEQNVAISGIHTHAGPG 127 (775)
Q Consensus 91 ~~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHSgP~ 127 (775)
+.--+.+|+++|++.++ .+.++|+|..-+||-|=+
T Consensus 11 ~Tpsr~ei~~klA~~~~--~~~~~ivv~~~~t~fG~~ 45 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLN--VDPDLIVVFGIKTEFGGG 45 (84)
T ss_dssp SS--HHHHHHHHHHHHT--STGCCEEEEEEEESSSSS
T ss_pred CCCCHHHHHHHHHHHhC--CCCCeEEEeccEecCCCc
Confidence 34457999999999999 899999999999999876
No 11
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=42.66 E-value=21 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.399 Sum_probs=19.8
Q ss_pred EEEcCCCCCCcceeEEEeecccCCCCC
Q 004083 734 EWKIPESAVSGVYRIRHFGASKSLVGS 760 (775)
Q Consensus 734 ~W~ip~~~~~G~YRi~~~G~~k~~~g~ 760 (775)
.|-- +.||+|+|......+...|+
T Consensus 6 nW~F---T~PG~Y~l~~~a~~~~~~G~ 29 (41)
T TIGR03769 6 NWVF---TKPGTYTLTVQATATLTDGK 29 (41)
T ss_pred ceee---CCCeEEEEEEEEEEEeCCCc
Confidence 5655 67999999999988777777
No 12
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=34.69 E-value=48 Score=29.58 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=30.6
Q ss_pred CCEEEEEEeccccc-c----HHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 004083 77 GNRVVFVNLDACMA-S----QLVTIKVLERLKARYGDLYTEQNVAISGIHTHA 124 (775)
Q Consensus 77 ~~rvv~Vs~Dl~~i-~----~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHS 124 (775)
...+++|.+.+... + +.+...+.++|++++| |++++|+|+-+-++.
T Consensus 26 s~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~g--i~p~Dv~I~l~e~~~ 76 (82)
T PF14552_consen 26 SDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLG--IRPEDVMIVLVENPR 76 (82)
T ss_dssp -TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH-----GGGEEEEEEEE-G
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcC--CCHHHEEEEEEECCc
Confidence 45678888877733 2 4577888889999999 999999999887763
No 13
>PF12103 Lipl32: Surface lipoprotein of Spirochaetales order; InterPro: IPR021962 Lipl32 is an outer membrane surface lipoprotein of Leptospira like bacteria. ; PDB: 2ZZ8_A 2WFK_D 3FRL_B.
Probab=29.00 E-value=1.2e+02 Score=30.80 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=49.6
Q ss_pred CCeEEEEEEccCCCCCCCCCCCeEEEEEEcC----------CC-CeEEEeeCCCcceEEEEecCCCCCCceEEEEEEEcC
Q 004083 670 GDMVAVTFWSACPRNDLMTEGTFALVELLQG----------QN-AWVPAYDDDDFCLKFKWSRPAKLSPQSHATVEWKIP 738 (775)
Q Consensus 670 g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~----------~g-~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip 738 (775)
|+-|+-.|-.+-+.+.-..=+||+++||++- .+ .|+++.+|+|=+=...=.|.+ .-.|..++.=+++
T Consensus 63 ~dfvs~~f~~~~~~~~~~~FDT~I~leR~~ii~~~~I~~~aK~~~~~~L~~nDD~~e~p~~p~g~--~YNSLlR~~s~i~ 140 (182)
T PF12103_consen 63 GDFVSSAFKAAAQSDKSKYFDTWIRLERLDIIDPEKITKAAKSANWQTLGTNDDGSEMPKNPSGS--KYNSLLRIKSEIS 140 (182)
T ss_dssp TEEE-HHHHHS-HHHHC----EEEEEEEBS-SSGGGHHHHHHS-BSEEEEEESS-TTTEEEESSS--STTEEEEEE---S
T ss_pred cchhhHHHHhhcccchhhcccceEEEeeccccCHhHhhhhhcccceeeeccCCCccccccCcccc--cccceeeeeecCC
Confidence 5666666654444331234579999999842 12 499998777666555555554 5588888888886
Q ss_pred CCCC---CcceeEEEeecccC-CCCC
Q 004083 739 ESAV---SGVYRIRHFGASKS-LVGS 760 (775)
Q Consensus 739 ~~~~---~G~YRi~~~G~~k~-~~g~ 760 (775)
.-+. .|.|||.+.-.-.. +.|+
T Consensus 141 nP~KALvrGlYRI~FTtyktgeVkGs 166 (182)
T PF12103_consen 141 NPTKALVRGLYRIGFTTYKTGEVKGS 166 (182)
T ss_dssp SS-SSB-SEEEEEEEEESTTS-S-EE
T ss_pred CchHhhhheeeEeeeEEecccceeeE
Confidence 5433 49999988654433 4443
No 14
>PRK10301 hypothetical protein; Provisional
Probab=28.48 E-value=2.3e+02 Score=27.19 Aligned_cols=7 Identities=14% Similarity=0.567 Sum_probs=5.5
Q ss_pred CeEEEEE
Q 004083 671 DMVAVTF 677 (775)
Q Consensus 671 ~~v~~~F 677 (775)
+.|+.+|
T Consensus 46 ~~V~L~F 52 (124)
T PRK10301 46 QALTLNF 52 (124)
T ss_pred CEEEEEc
Confidence 5688888
No 15
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=25.59 E-value=1.2e+02 Score=29.51 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCCcceEEEEecCCCCCCceEEEEEE--EcCCCCCCcceeEEEe
Q 004083 710 DDDFCLKFKWSRPAKLSPQSHATVEW--KIPESAVSGVYRIRHF 751 (775)
Q Consensus 710 D~dw~t~~~W~r~~~~~~~s~~ti~W--~ip~~~~~G~YRi~~~ 751 (775)
...|.....|.... +....++.| .||.++++|.|.|..+
T Consensus 74 ~~~~~~~~~~~~~~---g~~~~~~h~~i~IPa~a~~G~YH~~i~ 114 (132)
T PF15418_consen 74 EKPWVFEQDYDIYG---GKKNYDFHEHIDIPADAPAGDYHFMIT 114 (132)
T ss_pred ccCcEEEEEEcccC---CcccEeEEEeeeCCCCCCCcceEEEEE
Confidence 45688888885543 333455555 5799999999999875
No 16
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=24.86 E-value=1.5e+02 Score=28.08 Aligned_cols=49 Identities=8% Similarity=0.165 Sum_probs=38.0
Q ss_pred EEEEeCCCCEEEEEEeccccc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEecc
Q 004083 70 FIVAEPQGNRVVFVNLDACMA-SQ----LVTIKVLERLKARYGDLYTEQNVAISGIH 121 (775)
Q Consensus 70 lvl~d~~~~rvv~Vs~Dl~~i-~~----~v~~~V~~rL~~~~G~~i~~~nViIsATH 121 (775)
+.+.. .....+||.+-.++. .. .+...+-+.|.+++| |+.++|.|.-.-
T Consensus 49 m~fgG-s~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~Lg--Ip~dRiYI~f~d 102 (113)
T PTZ00450 49 MSFQG-STAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECG--IPAERIYVFYYS 102 (113)
T ss_pred EEEcC-CCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcC--CCcccEEEEEEc
Confidence 44544 456899999888884 33 466788888899999 999999998774
No 17
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=24.18 E-value=3.5e+02 Score=33.79 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=61.1
Q ss_pred CCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCCCCccchhccc-ccccchhhHHHHHHHHH
Q 004083 76 QGNRVVFVNLDACMASQLVTIKVLERLKARYGDLYTEQNVAISGIHTHAGPGGYLQYVVYIV-TSLGFVRQSFDALVDGI 154 (775)
Q Consensus 76 ~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHSgP~g~~~~~~~~l-~~~Gf~~~y~~~lvd~I 154 (775)
+|+-.+.|.+-..-+.+.....+.+.+++.+| ++.++|-|...-|...|.+...+---.. ........-.+.|.++|
T Consensus 475 dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LG--ip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl 552 (768)
T TIGR03196 475 DGTVKIRAHFACAECGQGFLAAAEQIAMEELG--CAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQL 552 (768)
T ss_pred CCCeEEEEEECCCCcCCCHHHHHHHHHHHHhC--CCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Confidence 46545666777777788888888889999999 9999999999999888864321100000 11124555556677777
Q ss_pred HHHHHHHHhcCCceEEEEEEEE
Q 004083 155 EKCIVQAHENLQPGSIYINKGE 176 (775)
Q Consensus 155 v~AI~~A~~~l~Pa~l~~g~g~ 176 (775)
.+.+.+.+ ...|..+.+..+.
T Consensus 553 ~~~aa~~l-~~~~~~~~~~~g~ 573 (768)
T TIGR03196 553 KARAAETA-GLPAEVVEAPAEN 573 (768)
T ss_pred HHHHHHHh-CCChhhEEEeCCe
Confidence 65543322 3334444444443
No 18
>PF01960 ArgJ: ArgJ family; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2.3.1.35 from EC and fifth steps 2.3.1.1 from EC in arginine biosynthesis []. The structure has been determined for glutamate N-acetyltransferase 2 (ornithine acetyltransferase; 2.3.1.35 from EC), an ArgJ-like protein from Streptomyces clavuligerus [].; GO: 0004358 glutamate N-acetyltransferase activity, 0006526 arginine biosynthetic process; PDB: 1VRA_A 1VZ7_A 1VZ8_D 2VZK_H 2V4I_A 2YEP_E 1VZ6_A 3IT4_A 3IT6_D.
Probab=21.44 E-value=3.1e+02 Score=31.62 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=34.9
Q ss_pred cceEEEEEEEEeCCCCEEEEEEeccccccHH--HHHHHHHHHHHHhCCCCCCCcEEEEec
Q 004083 63 FRLRARTFIVAEPQGNRVVFVNLDACMASQL--VTIKVLERLKARYGDLYTEQNVAISGI 120 (775)
Q Consensus 63 d~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~--v~~~V~~rL~~~~G~~i~~~nViIsAT 120 (775)
..=.+||+|+.+. ..-.+-..+. -..++.+.+++.+| +++++|++++|
T Consensus 52 ~~~~~ravvvNSG--------nANA~TG~~G~~da~~~~~~~A~~l~--~~~~~VlvaST 101 (388)
T PF01960_consen 52 KGGRIRAVVVNSG--------NANACTGEQGLEDAEAMAEAVAEALG--IPPEEVLVAST 101 (388)
T ss_dssp CCSBEEEEEEEES--------E---S-HHHHHHHHHHHHHHHHHHHT--CHGGGEEEEEE
T ss_pred cCCceEEEEEccC--------CCCCCCcHHHHHHHHHHHHHHHHHhC--CCcccEEEecc
Confidence 3456899999883 3444544444 44788899999999 99999999999
No 19
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=21.03 E-value=2.9e+02 Score=26.29 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=45.8
Q ss_pred cccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcC-C---CCeEEEeeCCCcceEEEEec-------CCCCCCceEEEEE
Q 004083 666 TFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQG-Q---NAWVPAYDDDDFCLKFKWSR-------PAKLSPQSHATVE 734 (775)
Q Consensus 666 ~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~-~---g~W~~v~~D~dw~t~~~W~r-------~~~~~~~s~~ti~ 734 (775)
+|.+|+.++|+=.+.++ ..+. .||.--|..+ + |.|...-++. +++.=-- +......+.+++.
T Consensus 29 ~y~pG~~~~Vtl~~~~~---~~F~-GF~lqAr~~~~~~~vG~f~~~~~~~---tk~~~c~~~~~avtH~~~~~k~~v~~~ 101 (135)
T cd08544 29 SYVPGETYTVTLSGSSP---SPFR-GFLLQARDASSNEPVGTFQLPPDSG---TKLLTCCGSDNAVTHSNNSKKTSVTFT 101 (135)
T ss_pred EECCCCEEEEEEECCCC---Ccee-EEEEEEEcCCCCcceEEEEeCCCcc---cEEecCCCCCCcceeCCCCCCceeEEE
Confidence 79999999999988665 2332 4443223322 1 6776553311 1111100 0011346789999
Q ss_pred EEcCCCCCCcceeEEEee
Q 004083 735 WKIPESAVSGVYRIRHFG 752 (775)
Q Consensus 735 W~ip~~~~~G~YRi~~~G 752 (775)
|.-|.+. .|...|+---
T Consensus 102 W~AP~~~-~g~V~F~aTv 118 (135)
T cd08544 102 WTAPSNG-SGCVTFRATV 118 (135)
T ss_pred EECCCCC-CccEEEEEEE
Confidence 9998864 7888887543
No 20
>PRK09408 ompX outer membrane protein X; Provisional
Probab=20.96 E-value=1.1e+02 Score=31.12 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=23.4
Q ss_pred CcchhhHHHHHHHHHhhcCCCCCCCceEEEEEEEecc
Q 004083 4 QPVVTCLSVFLLLFIQNIGGSSSASNYLIGLGSYDIT 40 (775)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~vG~ak~DIT 40 (775)
+.+++..++.|++++....+.+..+.+.+|.+..++.
T Consensus 2 kk~~~~~~~~~~~~~~~~~~~~~~~t~s~GYaq~~~~ 38 (171)
T PRK09408 2 KKIACLSALACVLAVTAGTAVAATSTVTGGYAQSDAQ 38 (171)
T ss_pred ceEehHHHHHHHHHHhhhhhhcccceEEEEEEEeecc
Confidence 3444444454444444443444458999999999997
No 21
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.79 E-value=1.7e+02 Score=28.34 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=49.1
Q ss_pred CCCCCCceEEEEEEEeccCCCCccccccccCCccccceeecceEEEEEEEEeCCCCEEEEEEeccccccHHHHHHHHHHH
Q 004083 23 GSSSASNYLIGLGSYDITGPAADVNMMGYASAEQIASGVHFRLRARTFIVAEPQGNRVVFVNLDACMASQLVTIKVLERL 102 (775)
Q Consensus 23 ~~~~~~~l~vG~ak~DITpP~~~v~m~GYa~~~~~a~Gihd~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~rL 102 (775)
+....+.|++...+.||+ +.+.|.-.+ ..-|+. ..+.|+. .++--+++.-|+.+...++ +.|.+.|
T Consensus 12 g~~~~gv~~v~~~R~dl~-----vt~~G~~~~--~~~~l~-----~~~aF~~-~~~G~A~~~Gd~vll~~EV-~pvi~aL 77 (123)
T PF07485_consen 12 GTASGGVYKVTIPRNDLK-----VTIDGRRLP--PPMGLT-----SWIAFEP-DGDGKAMVMGDFVLLEDEV-NPVISAL 77 (123)
T ss_pred ceeeCCEEEEEEccCCce-----EEECCEEcC--Cccccc-----eeEEEEE-CCCCcEEEeecEEecHHHH-HHHHHHH
Confidence 344577788888887766 223333211 111222 2344554 3444677888998888776 5566666
Q ss_pred HHHhCCCCCCCcEEEEecccCC
Q 004083 103 KARYGDLYTEQNVAISGIHTHA 124 (775)
Q Consensus 103 ~~~~G~~i~~~nViIsATHTHS 124 (775)
.+ -| |.|+|.|.|-
T Consensus 78 ~~-~G-------I~vtAlHNH~ 91 (123)
T PF07485_consen 78 RK-NG-------IEVTALHNHW 91 (123)
T ss_pred HH-CC-------ceEEEEeccc
Confidence 55 34 8999999997
Done!