Query 004083
Match_columns 775
No_of_seqs 229 out of 558
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zws_A Neutral ceramidase; pri 100.0 4E-162 2E-166 1409.3 66.9 635 27-774 2-642 (646)
2 2p9r_A Alpha-2-M, alpha-2-macr 94.9 0.2 6.7E-06 44.3 10.6 88 664-774 10-97 (102)
3 4fxk_A Complement C4 beta chai 86.5 2 6.8E-05 49.5 9.9 82 655-753 120-201 (656)
4 2pn5_A TEP1R, thioester-contai 75.1 11 0.00036 47.7 11.3 85 655-753 100-184 (1325)
5 3hrz_A Cobra venom factor; ser 72.7 4.1 0.00014 47.5 6.3 79 655-753 104-182 (627)
6 4acq_A Alpha-2-macroglobulin; 68.2 18 0.0006 46.3 11.1 86 653-753 102-187 (1451)
7 2hr0_A Complement C3 beta chai 66.4 33 0.0011 39.6 12.1 83 655-752 106-188 (645)
8 3prx_B Cobra venom factor; imm 52.2 35 0.0012 44.2 9.7 80 654-753 125-204 (1642)
9 2c9r_A COPC, copper resistance 50.0 1.3E+02 0.0043 26.5 10.4 59 671-737 19-85 (102)
10 1lyq_A PCOC copper resistance 45.6 1.3E+02 0.0043 26.7 9.7 29 671-705 20-48 (104)
11 2b39_A C3; thioester, immune d 43.3 57 0.002 42.2 9.7 83 655-752 127-209 (1661)
12 3cu7_A Complement C5; Mg domai 39.0 55 0.0019 42.3 8.6 81 655-752 124-205 (1676)
13 4ank_A Transthyretin; hormone 32.0 41 0.0014 32.1 4.3 63 695-774 52-118 (147)
14 2vtc_A CEL61B, cellulase; hydr 31.8 5.6 0.00019 41.1 -1.8 24 732-755 160-183 (249)
15 3zxn_A RSBS, anti-sigma-factor 30.5 77 0.0026 28.5 5.8 49 519-574 4-52 (123)
16 2dle_A Receptor-type tyrosine- 29.4 75 0.0026 27.6 5.4 25 728-753 21-48 (104)
17 3eja_A Protein GH61E; beta san 29.1 1.1E+02 0.0038 30.6 7.2 24 733-756 119-142 (208)
18 4hl2_A Beta-lactamase NDM-1; s 28.8 1.2E+02 0.0042 29.6 7.5 52 64-124 45-96 (243)
19 2y8b_A Metallo-B-lactamase; hy 28.1 1.4E+02 0.0046 30.0 7.9 52 64-124 65-116 (265)
20 1uiz_A MIF, macrophage migrati 27.4 69 0.0024 28.2 4.9 44 77-122 54-102 (115)
21 1hfo_A Migration inhibitory fa 26.6 73 0.0025 27.9 4.9 44 77-122 53-101 (113)
22 4eyb_A Beta-lactamase NDM-1; m 26.3 1.1E+02 0.0037 30.9 6.7 51 65-124 73-123 (270)
23 1xn9_A 30S ribosomal protein S 24.3 63 0.0022 28.9 3.9 32 94-127 31-62 (101)
24 2h41_A Fibronectin; beta sandw 24.1 51 0.0018 28.5 3.3 20 731-751 22-41 (95)
25 3m8t_A 'BLR6230 protein; subcl 23.9 52 0.0018 33.1 3.8 48 68-124 56-104 (294)
26 1vra_A Arginine biosynthesis b 23.1 1.2E+02 0.004 30.6 6.0 46 66-121 89-136 (208)
27 1u9d_A Hypothetical protein VC 22.0 3.4E+02 0.012 24.8 8.5 76 93-174 31-109 (122)
28 2v94_A RPS24, 30S ribosomal pr 21.7 79 0.0027 28.5 4.0 34 92-127 38-71 (107)
29 1ywx_A 30S ribosomal protein S 21.6 79 0.0027 28.3 4.0 32 94-127 31-62 (102)
30 3djh_A Macrophage migration in 21.2 95 0.0033 27.4 4.5 49 69-120 46-99 (114)
31 2ocf_D Fibronectin; estrogen r 20.8 1.2E+02 0.004 26.8 5.1 22 730-752 44-65 (121)
32 3fwu_A Macrophage migration in 20.5 66 0.0023 29.6 3.4 43 78-122 76-123 (133)
33 3tes_A Tencon; fibronectin typ 20.4 1.5E+02 0.0051 24.9 5.5 24 728-752 15-38 (98)
34 2wkb_A Macrophage migration in 20.3 86 0.0029 28.1 4.1 43 78-122 55-102 (125)
No 1
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=100.00 E-value=4.4e-162 Score=1409.26 Aligned_cols=635 Identities=42% Similarity=0.699 Sum_probs=591.5
Q ss_pred CCceEEEEEEEeccCCCCccccccccCCccccceeecceEEEEEEEEeC-CCCEEEEEEeccccccHHHHHHHHHHHHHH
Q 004083 27 ASNYLIGLGSYDITGPAADVNMMGYASAEQIASGVHFRLRARTFIVAEP-QGNRVVFVNLDACMASQLVTIKVLERLKAR 105 (775)
Q Consensus 27 ~~~l~vG~ak~DITpP~~~v~m~GYa~~~~~a~Gihd~L~ARAlvl~d~-~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~ 105 (775)
.+.|+||++++|||||+.+++||||+.+.++++|||||||||||||+++ +++|+|||++|++|+++.++++|+++|+++
T Consensus 2 ~~~~~vG~g~~DITgP~~~v~m~GYa~~~q~a~Gihd~L~aRA~vl~d~~~~~rvv~Vs~D~~~~~~~v~~~V~~~L~~~ 81 (646)
T 2zws_A 2 DLPYRFGLGKADITGEAAEVGMMGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKVLARLKAK 81 (646)
T ss_dssp CCSEEEEEEEEECCCCCEEEEEESSCCTTCEEEEESSCCEEEEEEEEESSSCCEEEEEEESSSCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEeCCCCCCCceecCccccCccccceecceEEEEEEEEcCCCCCEEEEEEECcccCCHHHHHHHHHHHHHH
Confidence 4579999999999988899999999999999999999999999999984 389999999999999999999999999999
Q ss_pred hCCCCCCCcEEEEecccCCCCCCCccchhcccccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEcCcccCCC
Q 004083 106 YGDLYTEQNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKCIVQAHENLQPGSIYINKGELLDAGVNRS 185 (775)
Q Consensus 106 ~G~~i~~~nViIsATHTHSgP~g~~~~~~~~l~~~Gf~~~y~~~lvd~Iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NRs 185 (775)
||++|+.+||+||+|||||||++|+++.+|+++..||+++|+++|+++|++||++||++|+|++|.++++++.++++|||
T Consensus 82 ~g~~~~~~nV~isaTHTHSgP~g~~~~~l~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~pa~l~~g~g~~~~~~~NRs 161 (646)
T 2zws_A 82 YPGVYDENNVMLAATHTHSGPGGFSHYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRNASRNRS 161 (646)
T ss_dssp STTTCCTTTEEEEECCBSBEECCCCSSHHHHGGGTBCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEECCSSEEESC
T ss_pred hCCCCChhHEEEEeeeeCCCCcccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeCcceecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCChhhhccCCCCCCCeeEEEEEEeCCCCeEEEEEeeeccccccCCCCCcccCchHHHHHHHHHHHhhccCCCCC
Q 004083 186 PSSYLNNPAAERSKYKYDVDKEMTLIKFVNEEWGPIGSFNWFATHGTSMSRTNPLISGDNKGAAARFMEDWFEQRGSHNG 265 (775)
Q Consensus 186 ~~ay~~NP~~er~~~~g~vD~~~~vLrf~~~dG~~ia~L~nyA~HpTsl~~~n~lIS~D~~G~a~~~lE~~~~~~~~~~~ 265 (775)
+.+|++|| ||.+|++++||+|++|+|++.||+++|+|+|||||||+|+++|++||+||+|+++++||+.+++
T Consensus 162 ~~ay~~NP--er~~~~g~vD~~~~vL~f~~~dg~~ig~l~~fA~HpTsl~~~N~liS~D~~G~a~~~lE~~~~~------ 233 (646)
T 2zws_A 162 LLSHLKNP--DIAGYEDGIDPQMSVLSFVDANGELAGAISWFPVHSTSMTNANHLISPDNKGYASYHWEHDVSR------ 233 (646)
T ss_dssp HHHHTTCS--CCTTCTTSCCCEEEEEEEEETTCCEEEEEEECCCCBCSSCTTCCEEBCHHHHHHHHHHHHTTCC------
T ss_pred hhhhhcCc--cccccCCCCCCceEEEEEEeCCCCEEEEEEEEccCceecCCCCCeecCccHHHHHHHHHHHhCC------
Confidence 99999999 7999999999999999999999999999999999999999999999999999999999997632
Q ss_pred CCCCCCCCCCCCCcccccccccCCCCccchHHHHHhhhhcccCCCCccccchhhhhhhhhcccCCCCCeEEEeeccCcCC
Q 004083 266 FNSPYSNNPGTDRVPRRISNLVHNPLENGNELMKLAASFERSEGRPATRSLSVASRVRNALKRADKPQFVSAFCQSNCGD 345 (775)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GD 345 (775)
+++||++|+|||+||
T Consensus 234 -----------------------------------------------------------------~~~fva~F~qg~~GD 248 (646)
T 2zws_A 234 -----------------------------------------------------------------KSGFVAAFAQTNAGN 248 (646)
T ss_dssp -----------------------------------------------------------------STTCEEEEECSSCTT
T ss_pred -----------------------------------------------------------------CCCeEEEEeccCccc
Confidence 367999999999999
Q ss_pred CCCCCCCCccccCCCCCCCCCCcCCCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHHhhccccccCCceeEEEEEec
Q 004083 346 VSPNVLGAFCIDSGLPCDFNQSTCNGKNELCYGRGPGYPDEFESTRIIGERQFRKAVELFNTATEQLTGKVGYKHAYVDF 425 (775)
Q Consensus 346 vsPn~~g~~c~d~g~~c~~~~s~c~~~~~~~~~~GP~~~d~~e~~~iiG~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm 425 (775)
+|||+. .|+++||+ .++|+++++||++|+++|++++++..+++.|+|+++|+||||
T Consensus 249 vsP~~~-----------------------~~~~~Gp~-~~~~e~~~~iG~~~~~~a~~~l~~~~~~l~g~v~~~~~~vdm 304 (646)
T 2zws_A 249 LSPNLN-----------------------LKPGSGPF-DNEFDNTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDF 304 (646)
T ss_dssp EEECCC-----------------------CCTTCCTT-SCHHHHHHHHHHHHHHHHHHHHHHCCEEECSCEEEEEEEEEC
T ss_pred CCcccc-----------------------ccccCCCC-cccHHHHHHHHHHHHHHHHHHHhhccccccCCcceEEEEecC
Confidence 999975 26688998 789999999999999999999988778999999999999999
Q ss_pred cceeecCCCCCCCcccccccccccchhhhhcc-cCCCCCcccccCCCCCChhHHHHHhhhcCC-ChhhhhccCCCceeec
Q 004083 426 SNLEVGLPKRGGGTEVVKTCPAAMGFAFAAGT-TDGPGAFDFKQGDDKGNPFWKLVRNVLKAP-SKEQVKCQHPKPILLD 503 (775)
Q Consensus 426 ~~~~v~~p~~~~~~~~~~tc~~a~G~sfaagt-~Dgpg~~~f~qg~~~~~p~w~~~~~~l~~p-~~~~~~cq~pKpill~ 503 (775)
++++|.++.. +++.++||++|||++|+||+ +||||.++|+|+ + ||+|+.+++++.+| ++++.+||+||||||+
T Consensus 305 ~~~~v~~~~~--~g~~~~tc~~a~g~s~aag~~~dgpg~~~f~q~-~--~~~w~~~~~~l~~~~~~~~~~cq~~k~ill~ 379 (646)
T 2zws_A 305 TRLPIRPEFT--DGQPRQLCTAAIGTSLAAGSTEDGPGPLGLEEG-N--NPFLSALGGLLTGVPPQELVQCQAEKTILAD 379 (646)
T ss_dssp TTCEECGGGS--SSSCEECCCCCEEC---------------CCSS-C--CHHHHHTTCSCCCCCCHHHHHHTTTCCEEEC
T ss_pred cceeeecccC--CcccceechhhhchhhhcCCcccCCCccccccc-c--chhhhhhhhhhccccchhHHhhccCcceecc
Confidence 9999876543 23688999999999999999 999999999999 4 99999999999998 7999999999999999
Q ss_pred CCCCcCCCCCCCcceeEEEEEEcCEEEEecCCchhhhHHHHHHHHHHHHHHcCCCCCCCCCceEEEEeecCcCccccCCh
Q 004083 504 TGEMKIPYDWAPSILPVQILRIGQLVILNVPGEFTTMAGRRLRDAIKMALISGGGGQFNSNVHIVIAGLTNTYSQYVTTF 583 (775)
Q Consensus 504 ~G~~~~p~~w~p~~v~iqilriG~l~i~~vPgE~tt~aG~Rlr~~v~~~l~~~~~~~~~~~~~vvv~G~aN~y~~YvtT~ 583 (775)
+|+ +.||+|+|.++|||+||||+|+|+++|||+|||+|||||+++++++.+. +...|+|+||+|+|+|||||+
T Consensus 380 ~g~-~~p~~~~~~~v~vqilriGdl~iv~~PgE~tt~~G~rlr~~~~~~~~~~------~~~~v~v~GyaN~y~gYi~T~ 452 (646)
T 2zws_A 380 TGN-KKPYPWTPTVLPIQMFRIGQLELLGAPAEFTVMAGVRIRRAVQAASEAA------GIRHVVFNGYANAYASYVTTR 452 (646)
T ss_dssp CTT-CSSSCSSCSEEEEEEEEETTEEEEECSSEECHHHHHHHHHHHHHHHGGG------TCCEEEEECSBSSCCCEECCH
T ss_pred cCC-CCCcccccceEEEEEEEECCEEEEecCcHHHHHHHHHHHHHHHhhhccC------CCceEEEEecCCCCCCccCCH
Confidence 999 7899999999999999999999999999999999999999999988653 347999999999999999999
Q ss_pred hhcccccceeeeeccCcChHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCCccccCCCCCCcccceeecCCC
Q 004083 584 DEYQVQRYEGASTLYGPHTLSAYIQEFKKLAAALIIGQTVMPGPPPPDLLDKQISLLPPVVVDATPLGVKFGDVKTDVPQ 663 (775)
Q Consensus 584 eeY~~q~YEg~sTlyGp~tl~a~~q~~~~La~al~~g~~~~~gp~p~d~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~~~ 663 (775)
|||+.|+|||+||+|||||+++|+|++.+|+++|..|+++++||+|||+++++++|+++|++|.+|+|++||||+.||.
T Consensus 453 EeY~~q~YEg~sT~~gp~tl~~~i~~~~~L~~~l~~~~~~~~g~~p~~~~~~~~~~~~~v~~d~~p~~~~fg~v~~~~~- 531 (646)
T 2zws_A 453 EEYAAQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVETSAIAPDLSCCQMNFQTGVVADDPYIGKSFGDVLQQPR- 531 (646)
T ss_dssp HHHHHCCTTTTSCTTCTTHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCGGGCCBCCCCCCCCCCCTTCCTTCEEECCC-
T ss_pred HHHhcCCccceeeecCCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCCccCCCCCCCCCCcEeecCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeE--EEeeCCCcceEEEEecCCCCCCceEEEEEEEcCCCC
Q 004083 664 NSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWV--PAYDDDDFCLKFKWSRPAKLSPQSHATVEWKIPESA 741 (775)
Q Consensus 664 ~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~--~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~ 741 (775)
++|++|++|+|+|++||||||||+++||++|||+.++|+|+ +|+||+||+|+|+|+|++ .++|++||+|+||+++
T Consensus 532 -~~y~~g~~v~~~f~~~~p~n~~~~~~t~~~ve~~~~~~~w~~~~v~~D~d~~t~~~w~r~~--~~~s~~~~~W~i~~~~ 608 (646)
T 2zws_A 532 -ESYRIGDKVTVAFVTGHPKNDLRTEKTFLEVVNIGKDGKQTPVTVATDNDWDTQYRWERVG--ISASKATISWSIPPGT 608 (646)
T ss_dssp -SEEETTCEEEEEEECCCGGGCCCTTSCSEEEEEEESSSCCCCEEEEETTSTTEEEEEEEET--TTEEEEEEEEECCTTC
T ss_pred -ccccCCCEEEEEEEccCCCcccccCCceEEEEEecCCCceEEEEEecCCCccEEEEEEeCC--CCceEEEEEEECCCCC
Confidence 49999999999999999999999999999999977788999 999999999999999998 4999999999999999
Q ss_pred CCcceeEEEeecccC-CCCCeeeeEEecceEEEe
Q 004083 742 VSGVYRIRHFGASKS-LVGSISHFIGSSSAFVVA 774 (775)
Q Consensus 742 ~~G~YRi~~~G~~k~-~~g~~~~~~g~s~~F~v~ 774 (775)
+||+|||+|||+||+ +.|+|+||+|+|++|+|.
T Consensus 609 ~~g~yRi~~~g~~k~~~~g~~~~~~g~s~~f~v~ 642 (646)
T 2zws_A 609 EPGHYYIRHYGNAKNFWTQKISEIGGSTRSFEVL 642 (646)
T ss_dssp CSEEEEEEEEEEEECTTTCCEEEEEEECCCEEEE
T ss_pred CCcceEEEEEcccccccCCCceeeEEecccEEEe
Confidence 999999999999999 999999999999999997
No 2
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=94.85 E-value=0.2 Score=44.30 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=55.4
Q ss_pred CCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEEEEEcCCCCCC
Q 004083 664 NSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATVEWKIPESAVS 743 (775)
Q Consensus 664 ~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~ 743 (775)
+..|++||+|.+.++.-+.... ......+.|+-.+.+ -....+|.... .....+..+|.+|.+.+.
T Consensus 10 r~iYrPGetV~~~~~~~~~~~~-p~~~~~~~v~l~dp~-----------g~~v~~~~~~~--~~~G~~~~~f~Lp~~~~~ 75 (102)
T 2p9r_A 10 KSIYKPGQTVKFRVVSMDENFH-PLNELIPLVYIQDPK-----------GNRIAQWQSFQ--LEGGLKQFSFPLSSEPFQ 75 (102)
T ss_dssp CSEECTTCEEEEEEEEECGGGC-BCCCEEEEEEEECTT-----------SCEEEEEEEEE--CBTTEEEEEEECCSSCCC
T ss_pred CcccCCCCEEEEEEEEECCCCc-CCCCCceEEEEECCC-----------CCEEEEEEeec--CCCCEEEEEEECCCCCCC
Confidence 4589999999988876544221 223444555544333 33455564432 123356779999999999
Q ss_pred cceeEEEeecccCCCCCeeeeEEecceEEEe
Q 004083 744 GVYRIRHFGASKSLVGSISHFIGSSSAFVVA 774 (775)
Q Consensus 744 G~YRi~~~G~~k~~~g~~~~~~g~s~~F~v~ 774 (775)
|.|+|+-+-.. |. -.+.+|+|+
T Consensus 76 G~y~i~~~~~~----~~-----~~~~~F~Ve 97 (102)
T 2p9r_A 76 GSYKVVVQKKS----GG-----RTEHPFTVE 97 (102)
T ss_dssp EEEEEEEECTT----SC-----EEEEEEEEC
T ss_pred eeEEEEEEECC----CC-----eEEEEEEEE
Confidence 99999987532 22 145678886
No 3
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=86.49 E-value=2 Score=49.54 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=50.5
Q ss_pred cceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEEE
Q 004083 655 GDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATVE 734 (775)
Q Consensus 655 Gdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~ 734 (775)
|-|..|-+ +..|+|||+|.+..+.-++. ++-...-+.|+-.+.+| ....+|.-.. ....+..+
T Consensus 120 ~~vFIqTD-r~iYrPGqtV~~r~i~~d~~--~~p~~~~~~v~i~dp~g-----------~~v~~~~~~~---~~G~~~~~ 182 (656)
T 4fxk_A 120 GHLFLQTD-QPIYNPGQRVRYRVFALDQK--MRPSTDTITVMVENSHG-----------LRVRKKEVYM---PSSIFQDD 182 (656)
T ss_dssp SEEEEEES-CSEECTTCEEEEEEEEECSS--SSBCCCCEEEEEECTTC-----------CEEEEEEECC---TTSEEEEE
T ss_pred ccEEEECC-CCCcCCCCEEEEEEEEECCc--cCcCcccceEEEECCCC-----------cEEeeeEEec---CCceEEEE
Confidence 45665532 45899999999877765543 32222223444333332 2333454332 23467789
Q ss_pred EEcCCCCCCcceeEEEeec
Q 004083 735 WKIPESAVSGVYRIRHFGA 753 (775)
Q Consensus 735 W~ip~~~~~G~YRi~~~G~ 753 (775)
|.+|.+.+.|+|+|+..-.
T Consensus 183 f~Lp~~~~~G~w~i~v~~~ 201 (656)
T 4fxk_A 183 FVIPDISEPGTWKISARFS 201 (656)
T ss_dssp EECCTTCCSEEEEEEEEES
T ss_pred ecCCCCCCCcCEEEEEEEc
Confidence 9999999999999998644
No 4
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=75.10 E-value=11 Score=47.68 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=52.6
Q ss_pred cceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEEE
Q 004083 655 GDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATVE 734 (775)
Q Consensus 655 Gdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~ 734 (775)
+.+..|-+ +..|+|||+|.+.-+.-++....-.....++|+-.+.+ -....+|+-.. .....+..+
T Consensus 100 ~~~fi~TD-r~iYrPGqtV~~r~~~~~~~~~p~~~~~~v~v~l~dp~-----------g~~i~~~~~~~--~~~G~~~~~ 165 (1325)
T 2pn5_A 100 ISGLIQVD-KPVFKPGDTVNFRVIVLDTELKPPARVKSVYVTIRDPQ-----------RNVIRKWSTAK--LYAGVFESD 165 (1325)
T ss_dssp EEEEEEES-CSEECTTCEEEEEEEEEETTSSCCSSCCEEEEEEECTT-----------CCEEEEEEEEE--CBTTEEEEE
T ss_pred ccEEEecC-CCccCCCCEEEEEEEEecCCccccccCccEEEEEECCC-----------CCEEEEEeccc--CCCCeEecc
Confidence 45555543 56899999999776655543221112223555544333 33456676532 123356789
Q ss_pred EEcCCCCCCcceeEEEeec
Q 004083 735 WKIPESAVSGVYRIRHFGA 753 (775)
Q Consensus 735 W~ip~~~~~G~YRi~~~G~ 753 (775)
|.+|.+...|.|+|+-+..
T Consensus 166 f~Lp~~~~~G~y~I~~~~~ 184 (1325)
T 2pn5_A 166 LQIAPTPMLGVWNISVEVE 184 (1325)
T ss_dssp EECCSSCCCEEEEEEEEET
T ss_pred eECCCCccccceEEEEEeC
Confidence 9999999999999998764
No 5
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=72.72 E-value=4.1 Score=47.47 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=46.3
Q ss_pred cceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEEE
Q 004083 655 GDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATVE 734 (775)
Q Consensus 655 Gdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~ 734 (775)
|-+..|-+ +..|+|||+|.+.++.-++..... +.. ++|+-.+.+ -. ++.|.... .. +..+
T Consensus 104 ~~~fi~TD-r~iYrPGqtV~~r~i~~d~~~~p~-~~~-~~v~i~dP~-----------g~-~i~~~~~~--~~---~~~~ 163 (627)
T 3hrz_A 104 SFLFIQTD-KGIYTPGSPVLYRVFSMDHNTSKM-NKT-VIVEFQTPE-----------GI-LVSSNSVD--LN---FFWP 163 (627)
T ss_dssp SCEEEEES-CSEECTTCEECEEEEESCC--------C-EEEEEECTT-----------CC-EEEEEEEB--TT---BCCC
T ss_pred CcEEEECC-CCccCCCCEEEEEEEEECCCCccc-Ccc-EEEEEECCC-----------CC-EEEEEEec--cc---eEEE
Confidence 45555533 568999999999988866533221 222 334332222 22 23343322 11 6678
Q ss_pred EEcCCCCCCcceeEEEeec
Q 004083 735 WKIPESAVSGVYRIRHFGA 753 (775)
Q Consensus 735 W~ip~~~~~G~YRi~~~G~ 753 (775)
|.+|.+.+.|+|+|+..-.
T Consensus 164 f~Lp~~~~~G~w~i~v~~~ 182 (627)
T 3hrz_A 164 YNLPDLVSLGTWRIVAKYE 182 (627)
T ss_dssp EECCSSCCCEEEEEEEEET
T ss_pred EECCCCCCCeeEEEEEEEC
Confidence 9999999999999998643
No 6
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=68.23 E-value=18 Score=46.33 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=56.1
Q ss_pred cccceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEE
Q 004083 653 KFGDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHAT 732 (775)
Q Consensus 653 ~fGdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~t 732 (775)
+-|-++.|-+ +..|+|||+|.+.-+.=++.... ...++..|+-+ |.+.....+|.... .....+.
T Consensus 102 ~~~~~fiqTD-K~iY~Pgq~V~~rv~~~~~~~~p-~~~~~~~v~i~-----------dp~g~~i~~~~~~~--~~~G~~~ 166 (1451)
T 4acq_A 102 EDSLVFVQTD-KSIYKPGQTVKFRVVSMDENFHP-LNELIPLVYIQ-----------DPKGNRIAQWQSFQ--LEGGLKQ 166 (1451)
T ss_dssp CCCEEEEEES-CSEECTTCEEEEEEEEECTTCCB-CCCEEEEEEEE-----------CTTSCEEEEEEEEE--CBTTEEE
T ss_pred cCccEEEECC-CCcCCCCCEEEEEEEEECCCCcC-ccCceeEEEEE-----------CCCCCEEEEeeecc--CCCCeEE
Confidence 3466776643 56999999999776665543222 23444444433 34445566786543 2234677
Q ss_pred EEEEcCCCCCCcceeEEEeec
Q 004083 733 VEWKIPESAVSGVYRIRHFGA 753 (775)
Q Consensus 733 i~W~ip~~~~~G~YRi~~~G~ 753 (775)
.+|.+|.....|+|+|+-...
T Consensus 167 ~~f~L~~~~~~G~w~I~~~~~ 187 (1451)
T 4acq_A 167 FSFPLSSEPFQGSYKVVVQKK 187 (1451)
T ss_dssp EEEECCSSCCCEEEEEEEECT
T ss_pred EEeECCCCCCceeEEEEEEec
Confidence 899999999999999998653
No 7
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=66.44 E-value=33 Score=39.63 Aligned_cols=83 Identities=18% Similarity=0.356 Sum_probs=50.0
Q ss_pred cceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEEE
Q 004083 655 GDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATVE 734 (775)
Q Consensus 655 Gdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~ 734 (775)
|-+..|-+ +..|+|||+|.+.++.-++. ++.....++|+-.+.+| ..|. +..|+..+ ....+..+
T Consensus 106 ~~~fi~TD-R~iYrPGqtV~~r~i~~d~~--~~p~~~~v~v~l~dP~g--~~i~-------~~~~~~~~---~~G~~~~~ 170 (645)
T 2hr0_A 106 GYLFIQTD-KTIYTPGSTVLYRIFTVNHK--LLPVGRTVMVNIENPEG--IPVK-------QDSLSSQN---QLGVLPLS 170 (645)
T ss_dssp CEEEEEES-CSBCCTTSEEEEEEEEECTT--SCBCCCEEEEEEECTTS--CEEE-------EEEEECTT---TTTEEEEE
T ss_pred ccEEEEcC-CccCCCCCEEEEEEEEECCC--CcccCceEEEEEECCCC--CEEE-------EEEeeccc---cCCeEEEE
Confidence 34444432 55899999999888876642 33222345665444433 1111 22333310 12356789
Q ss_pred EEcCCCCCCcceeEEEee
Q 004083 735 WKIPESAVSGVYRIRHFG 752 (775)
Q Consensus 735 W~ip~~~~~G~YRi~~~G 752 (775)
|.+|.+.+.|+|+|+-+-
T Consensus 171 f~Lp~~~~~G~w~I~v~~ 188 (645)
T 2hr0_A 171 WDIPELVNMGQWKIRAYY 188 (645)
T ss_dssp EECCSSCCCSEEEEEEEE
T ss_pred EECCCccccccEEEEEEE
Confidence 999999999999999864
No 8
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=52.16 E-value=35 Score=44.16 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=50.5
Q ss_pred ccceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEE
Q 004083 654 FGDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATV 733 (775)
Q Consensus 654 fGdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti 733 (775)
-|-+..|-+ +..|+|||+|.++-+.-++.-..- +.+ ++|+ ..|.+-....+|.-.. . +..
T Consensus 125 ~~~~FiqTD-k~iYrPGqtV~~rvi~~~~~~~p~-~~~-~~v~-----------i~dP~g~~i~~~~~~~----~--~~~ 184 (1642)
T 3prx_B 125 SSFLFIQTD-KGIYTPGSPVLYRVFSMDHNTSKM-NKT-VIVE-----------FQTPEGILVSSNSVDL----N--FFW 184 (1642)
T ss_dssp CCCEEEEES-CSEECTTCEEEEEEEECCC------CCC-EEEE-----------EECSSCCEEEEEEECT----T--CCC
T ss_pred CCeEEEEcC-CCcCCCCCEEEEEEEEEcCCCccc-Cce-EEEE-----------EECCCCCEEEEEEecc----c--ceE
Confidence 356666643 568999999998777755432111 222 2332 3344555566676432 1 667
Q ss_pred EEEcCCCCCCcceeEEEeec
Q 004083 734 EWKIPESAVSGVYRIRHFGA 753 (775)
Q Consensus 734 ~W~ip~~~~~G~YRi~~~G~ 753 (775)
+|.+|...+.|+|+|+...+
T Consensus 185 ~f~L~~~~~~G~w~I~v~~~ 204 (1642)
T 3prx_B 185 PYNLPDLVSLGTWRIVAKYE 204 (1642)
T ss_dssp EEECCSSCCCEEEEEEEEET
T ss_pred EEEcCCCCCceeEEEEEEeC
Confidence 99999999999999998754
No 9
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=50.04 E-value=1.3e+02 Score=26.54 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=27.1
Q ss_pred CeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEE--------EeeCCCcceEEEEecCCCCCCceEEEEEEEc
Q 004083 671 DMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVP--------AYDDDDFCLKFKWSRPAKLSPQSHATVEWKI 737 (775)
Q Consensus 671 ~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~--------v~~D~dw~t~~~W~r~~~~~~~s~~ti~W~i 737 (775)
+.|+.+| .-.+....+-+.|-..++. .|.. ...|.+..+.+...-.. +....++|.|++
T Consensus 19 ~~v~L~F-----se~v~~~~s~v~v~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~l~~--L~~G~YtV~Wrv 85 (102)
T 2c9r_A 19 AKIELHF-----SENLVTQFSGAKLVMTAMP-GMEHSPMAVKAAVSGGGDPKTMVITPASP--LTAGTYKVDWRA 85 (102)
T ss_dssp SCEEEEE-----SSCCCGGGCEEEEEEEECC------CEEECEEEEECSSTTEEEEEESSC--CCSEEEEEEEEE
T ss_pred CEEEEEe-----CCCCccCccEEEEECCCCC-eeeeccccccccceecCCCCcEEEEECCC--CCCceEEEEEEE
Confidence 5688899 2333333344555544333 4543 33444455555544331 344455555554
No 10
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=45.65 E-value=1.3e+02 Score=26.69 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=13.9
Q ss_pred CeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeE
Q 004083 671 DMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWV 705 (775)
Q Consensus 671 ~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~ 705 (775)
+.|+.+| .-.+....+-+.|-..++. .|.
T Consensus 20 ~~V~L~F-----se~v~~~~s~v~v~~~~g~-~v~ 48 (104)
T 1lyq_A 20 EKIQLNF-----SENLTVKFSGAKLTMTGMK-GMS 48 (104)
T ss_dssp CCEEEEE-----SSCCCGGGCEEEEEEEEEC----
T ss_pred CEEEEEe-----CCCCcccccEEEEECCCCC-eee
Confidence 5688899 2334433345555544333 343
No 11
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=43.32 E-value=57 Score=42.20 Aligned_cols=83 Identities=18% Similarity=0.342 Sum_probs=49.0
Q ss_pred cceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEEEE
Q 004083 655 GDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHATVE 734 (775)
Q Consensus 655 Gdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~ti~ 734 (775)
|.+..|-+ +..|+|||+|.+.++.-+.+ ++....-++|+-.+.+| ..|. +..|+.++. .| .+..+
T Consensus 127 ~~~fiqTD-R~iYrPGqtV~~r~i~~d~~--~~p~~~~v~v~l~dP~g--~~i~-------~~~~~~t~~-~G--~~~~~ 191 (1661)
T 2b39_A 127 GYLFIQTD-KTIYTPGSTVLYRVFTVDHK--LLPVGQTVFITIETPDG--IPVK-------RDSKSSQNQ-FG--ILTLS 191 (1661)
T ss_dssp CEEEEEES-CSEECTTSEEEEEEEEECTT--SCCCCCCEEEEEEETTE--EEEE-------EEEECTTTT-TS--CCEEE
T ss_pred CcEEEecC-CCccCCCCEEEEEEEEECCC--CcccCceEEEEEECCCC--CEEe-------eeeeccccc-CC--eEeee
Confidence 34444432 55899999999888776533 33222334565444442 2221 223332111 23 35679
Q ss_pred EEcCCCCCCcceeEEEee
Q 004083 735 WKIPESAVSGVYRIRHFG 752 (775)
Q Consensus 735 W~ip~~~~~G~YRi~~~G 752 (775)
|.+|.+.+.|+|+|+-.-
T Consensus 192 f~Lp~~~~~G~w~I~v~~ 209 (1661)
T 2b39_A 192 WNIPELVNMGVWKIKAYY 209 (1661)
T ss_dssp EECCSSCCCEEEEEEEEE
T ss_pred eeCCCCccccceEEEEEe
Confidence 999999999999999864
No 12
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=39.05 E-value=55 Score=42.33 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=49.2
Q ss_pred cceeecCCCCCcccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEcCCCCeEEEeeCCCcceEEEEecCCCCCCceEEE-E
Q 004083 655 GDVKTDVPQNSTFKRGDMVAVTFWSACPRNDLMTEGTFALVELLQGQNAWVPAYDDDDFCLKFKWSRPAKLSPQSHAT-V 733 (775)
Q Consensus 655 Gdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~g~W~~v~~D~dw~t~~~W~r~~~~~~~s~~t-i 733 (775)
+.+..|-+ +..|+|||+|.+.+..-+.. ++....-++|+-.+.+ -....+|.-.. ....+. .
T Consensus 124 ~~~fiqTD-R~iYrPGqtV~~r~i~~d~~--~~p~~~~v~v~l~dP~-----------G~~i~~~~~~~---~~G~~~~~ 186 (1676)
T 3cu7_A 124 GFLFIHTD-KPVYTPDQSVKVRVYSLNDD--LKPAKRETVLTFIDPE-----------GSEVDMVEEID---HIGIISFP 186 (1676)
T ss_dssp SEEEEEES-CSEECTTCEECEEEEEECTT--CSCCCCCEEEEEEETT-----------TEECCCEEECC---SSSEEECC
T ss_pred CcEEEECC-CCccCCCCEEEEEEEEECCC--CcccccceEEEEECCC-----------CCEEEEEeeec---CCCceecc
Confidence 45555533 56899999999887765532 2211112344433333 33344443222 233567 7
Q ss_pred EEEcCCCCCCcceeEEEee
Q 004083 734 EWKIPESAVSGVYRIRHFG 752 (775)
Q Consensus 734 ~W~ip~~~~~G~YRi~~~G 752 (775)
++.+|.+.+.|+|+|+-.-
T Consensus 187 ~f~Lp~~~~~G~w~I~v~~ 205 (1676)
T 3cu7_A 187 DFKIPSNPRYGMWTIKAKY 205 (1676)
T ss_dssp CEECCSSCCCEEEEEEEEB
T ss_pred eeeCCCCccccceEEEEEe
Confidence 9999999999999999864
No 13
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=31.97 E-value=41 Score=32.09 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=32.5
Q ss_pred EEEEcCCCCeEEEe---eCCCcceEEEEecCCCCCCceEEEEEEEcCCCCCCcceeEEEe-ecccCCCCCeeeeEEecce
Q 004083 695 VELLQGQNAWVPAY---DDDDFCLKFKWSRPAKLSPQSHATVEWKIPESAVSGVYRIRHF-GASKSLVGSISHFIGSSSA 770 (775)
Q Consensus 695 Ver~~~~g~W~~v~---~D~dw~t~~~W~r~~~~~~~s~~ti~W~ip~~~~~G~YRi~~~-G~~k~~~g~~~~~~g~s~~ 770 (775)
+.|++.+|.|+.++ ||+|=-+. .|-.+++..+|+|||++. |+|-.-.|...-|.=+.=.
T Consensus 52 L~~~~~~~~~~~l~~~~Td~DGR~~-----------------~ll~~~~~~~G~Y~L~F~tg~Yf~~~g~~~F~p~V~V~ 114 (147)
T 4ank_A 52 VFRKAADDTWEPFASGKTSESGELH-----------------GLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVV 114 (147)
T ss_dssp EEEECTTSCEEEEEEEECCTTSEEC-----------------CSCCTTTCCSEEEEEEECHHHHHHHTTCCCSEEEEEEE
T ss_pred EEEECCCCCeEEEEEEEeCCCCCCC-----------------CCCCccccCCceEEEEEEHHHHHHhcCCCccccceEEE
Confidence 35666677888764 55554210 122344567899999873 3332222322223333445
Q ss_pred EEEe
Q 004083 771 FVVA 774 (775)
Q Consensus 771 F~v~ 774 (775)
|.|.
T Consensus 115 F~i~ 118 (147)
T 4ank_A 115 FTAN 118 (147)
T ss_dssp EEES
T ss_pred EEEE
Confidence 6653
No 14
>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina}
Probab=31.78 E-value=5.6 Score=41.13 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCcceeEEEeeccc
Q 004083 732 TVEWKIPESAVSGVYRIRHFGASK 755 (775)
Q Consensus 732 ti~W~ip~~~~~G~YRi~~~G~~k 755 (775)
+.+.+||.+.++|.|-|||.=-+-
T Consensus 160 ~~~~tIP~~l~~G~YLlR~E~iAL 183 (249)
T 2vtc_A 160 KWTVKIPSSLRPGNYVFRHELLAA 183 (249)
T ss_dssp EEEEECCTTBCSEEEEEEEEEEEC
T ss_pred eeEEEcCCCCCCcceEEEEEeeec
Confidence 446789999999999999875443
No 15
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=30.46 E-value=77 Score=28.48 Aligned_cols=49 Identities=6% Similarity=0.171 Sum_probs=37.5
Q ss_pred eEEEEEEcCEEEEecCCchhhhHHHHHHHHHHHHHHcCCCCCCCCCceEEEEeecC
Q 004083 519 PVQILRIGQLVILNVPGEFTTMAGRRLRDAIKMALISGGGGQFNSNVHIVIAGLTN 574 (775)
Q Consensus 519 ~iqilriG~l~i~~vPgE~tt~aG~Rlr~~v~~~l~~~~~~~~~~~~~vvv~G~aN 574 (775)
.+.++++++..++++.||+......+|++.+.+.+.+. ....+|.=+++
T Consensus 4 s~pii~~~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~~-------~~~~vIlDlsg 52 (123)
T 3zxn_A 4 RVPILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGV-------AGKGLVIDISA 52 (123)
T ss_dssp CSCEEEETTEEEEECCCCC-CHHHHHHHHHHHHHHTSS-------CCSEEEEECTT
T ss_pred cccEEEECCEEEEEEeEeeCHHHHHHHHHHHHHHHHhc-------CCCEEEEEcCC
Confidence 34568899999999999999999999999998877542 24556665553
No 16
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}
Probab=29.35 E-value=75 Score=27.62 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=17.8
Q ss_pred ceEEEEEEEcCCCCCCc---ceeEEEeec
Q 004083 728 QSHATVEWKIPESAVSG---VYRIRHFGA 753 (775)
Q Consensus 728 ~s~~ti~W~ip~~~~~G---~YRi~~~G~ 753 (775)
.+.+++.|..|.+. .+ .|||+|++.
T Consensus 21 ~~Sv~LsW~~p~~~-~~~i~~Y~v~~~~~ 48 (104)
T 2dle_A 21 ATSLTLIWKVSDNE-SSSNYTYKIHVAGE 48 (104)
T ss_dssp SSCEEEEEEESCST-TCCSCEEEEEEECS
T ss_pred cCEEEEEEcCCCCC-CCceEEEEEEEECC
Confidence 34589999887643 34 599999875
No 17
>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A*
Probab=29.14 E-value=1.1e+02 Score=30.63 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCcceeEEEeecccC
Q 004083 733 VEWKIPESAVSGVYRIRHFGASKS 756 (775)
Q Consensus 733 i~W~ip~~~~~G~YRi~~~G~~k~ 756 (775)
.+.+||.+.++|.|-|||.=-+..
T Consensus 119 ~~~~iP~~l~~G~YllR~E~ialh 142 (208)
T 3eja_A 119 FAVPIPPCIKSGYYLLRAEQIGLH 142 (208)
T ss_dssp EEEECCSSBCSEEEEEEEEEEECT
T ss_pred eEEeccCCCCCcceEEEeeeeeec
Confidence 466799999999999998655543
No 18
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=28.79 E-value=1.2e+02 Score=29.59 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=33.4
Q ss_pred ceEEEEEEEEeCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 004083 64 RLRARTFIVAEPQGNRVVFVNLDACMASQLVTIKVLERLKARYGDLYTEQNVAISGIHTHA 124 (775)
Q Consensus 64 ~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHS 124 (775)
.+...+++|++ + ++.+ -+|.+. .....+.+.+.|++..+ ++.+.| --||.|.
T Consensus 45 ~~~~n~~li~~-~-~~~i--LID~G~-~~~~~~~l~~~l~~~~~--~~i~~v--i~TH~H~ 96 (243)
T 4hl2_A 45 AVASNGLIVRD-G-GRVL--VVDTAW-TDDQTAQILNWIKQEIN--LPVALA--VVTHAHQ 96 (243)
T ss_dssp EEEEEEEEEEE-T-TEEE--EESCCS-SHHHHHHHHHHHHHHTC--CCEEEE--EECSSSH
T ss_pred cccceEEEEEE-C-CcEE--EEECCC-CCccHHHHHHHHHHhhC--CCeeEE--EECCCCc
Confidence 46688899987 3 4443 358774 44456778888888667 554444 4577775
No 19
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=28.14 E-value=1.4e+02 Score=30.00 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=32.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 004083 64 RLRARTFIVAEPQGNRVVFVNLDACMASQLVTIKVLERLKARYGDLYTEQNVAISGIHTHA 124 (775)
Q Consensus 64 ~L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHS 124 (775)
.....+++|+. + ++.+ -+|.+.- .....++.+.|++..| ++.+. |--||.|.
T Consensus 65 ~~~~n~~li~~-~-~~~i--LID~G~~-~~~~~~l~~~l~~~~g--~~i~~--VilTH~H~ 116 (265)
T 2y8b_A 65 VYSSNGLIVRD-A-DELL--LIDTAWG-AKNTVALLAEIEKQIG--LPVTR--SISTHFHD 116 (265)
T ss_dssp EEEEEEEEEEE-T-TEEE--EESCCSS-HHHHHHHHHHHHHHTC--SCEEE--EECSSSSH
T ss_pred cccceEEEEEE-C-CeEE--EEeCCCC-HHHHHHHHHHHHHhcC--CCeEE--EEeCCCCh
Confidence 35678888887 3 4443 4587753 2344667777877557 55444 44578774
No 20
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=27.44 E-value=69 Score=28.17 Aligned_cols=44 Identities=11% Similarity=-0.004 Sum_probs=33.7
Q ss_pred CCEEEEEEecccc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 004083 77 GNRVVFVNLDACM-ASQL----VTIKVLERLKARYGDLYTEQNVAISGIHT 122 (775)
Q Consensus 77 ~~rvv~Vs~Dl~~-i~~~----v~~~V~~rL~~~~G~~i~~~nViIsATHT 122 (775)
...+++|.+.+.. ...+ +..++-+.|.+.+| +++++|.|.-+-.
T Consensus 54 ~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~~~e~ 102 (115)
T 1uiz_A 54 TDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLN--IPANRVYINYYDL 102 (115)
T ss_dssp CSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEEEC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEEEC
Confidence 4578888888765 5544 66777788888899 9999999976543
No 21
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=26.64 E-value=73 Score=27.85 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=33.5
Q ss_pred CCEEEEEEecccc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 004083 77 GNRVVFVNLDACM-ASQL----VTIKVLERLKARYGDLYTEQNVAISGIHT 122 (775)
Q Consensus 77 ~~rvv~Vs~Dl~~-i~~~----v~~~V~~rL~~~~G~~i~~~nViIsATHT 122 (775)
...+++|.+.+.. ...+ +..++-+.|.+.+| +++++|+|.-+-.
T Consensus 53 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~~~e~ 101 (113)
T 1hfo_A 53 TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLG--IPKNRMYIHFVNL 101 (113)
T ss_dssp CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEEEC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcCeEEEEEEEC
Confidence 4568888888765 5544 66777888888899 9999999976543
No 22
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=26.29 E-value=1.1e+02 Score=30.91 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=34.8
Q ss_pred eEEEEEEEEeCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 004083 65 LRARTFIVAEPQGNRVVFVNLDACMASQLVTIKVLERLKARYGDLYTEQNVAISGIHTHA 124 (775)
Q Consensus 65 L~ARAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHS 124 (775)
+-+.++++.+ ++.+ |.+|..+ .....+++.+.|++..+ .+...|+ .||.|.
T Consensus 73 ~~~N~ylv~~--~~~~--ilIDtg~-~~~~~~~l~~~i~~~~~--~~I~~Ii--~TH~H~ 123 (270)
T 4eyb_A 73 VASNGLIVRD--GGRV--LVVDTAW-TDDQTAQILNWIKQEIN--LPVALAV--VTHAHQ 123 (270)
T ss_dssp EEEEEEEEEE--TTEE--EEESCCS-SHHHHHHHHHHHHHHTC--CCEEEEE--ECSSSH
T ss_pred cceEEEEEEE--CCEE--EEEeCCC-CHHHHHHHHHHHHHhcC--CceEEEE--eCCCCh
Confidence 4477888887 3444 3468764 55666788888888777 6655555 578885
No 23
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.32 E-value=63 Score=28.85 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 004083 94 VTIKVLERLKARYGDLYTEQNVAISGIHTHAGPG 127 (775)
Q Consensus 94 v~~~V~~rL~~~~G~~i~~~nViIsATHTHSgP~ 127 (775)
-+.+|+++|++.|+ .+++.|++-.-.||-|-+
T Consensus 31 sk~eirekLAk~~~--~~~~~Vvv~~~~t~fG~g 62 (101)
T 1xn9_A 31 SRNDVRNKLAAMLN--APLELLVIQRIKTEYGMQ 62 (101)
T ss_dssp CHHHHHHHHHHHTT--CCTTTEEEEEEEECSSSS
T ss_pred CHHHHHHHHHHHHC--CCCCEEEEEeeEecCCCc
Confidence 45899999999999 899999999999999977
No 24
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A
Probab=24.09 E-value=51 Score=28.52 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=8.3
Q ss_pred EEEEEEcCCCCCCcceeEEEe
Q 004083 731 ATVEWKIPESAVSGVYRIRHF 751 (775)
Q Consensus 731 ~ti~W~ip~~~~~G~YRi~~~ 751 (775)
++|.|+.|....-+ |||.|.
T Consensus 22 ~~lsW~~p~~~v~~-Y~I~y~ 41 (95)
T 2h41_A 22 FVVSWVSASDTVSG-FRVEYE 41 (95)
T ss_dssp EEEECCCSCTTEEE-EEEEEE
T ss_pred EEEEECCCCCCccE-EEEEEE
Confidence 44555444322222 555443
No 25
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=23.85 E-value=52 Score=33.10 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=29.7
Q ss_pred EEEEEEeCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcE-EEEecccCC
Q 004083 68 RTFIVAEPQGNRVVFVNLDACMASQLVTIKVLERLKARYGDLYTEQNV-AISGIHTHA 124 (775)
Q Consensus 68 RAlvl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~rL~~~~G~~i~~~nV-iIsATHTHS 124 (775)
.+++|+. ++ . .|-+|.+.- ...+.+.+.|++ .| ++.+.| .|--||.|.
T Consensus 56 n~~li~~-~~-~--~iLID~G~~--~~~~~~~~~l~~-~g--~~~~~i~~ii~TH~H~ 104 (294)
T 3m8t_A 56 AVYVIKT-SQ-G--LILMDTAMP--QSTGMIKDNIAK-LG--FKVADIKLILNTHAHL 104 (294)
T ss_dssp CCEEEEE-TT-E--EEEECCCCG--GGHHHHHHHHHH-TT--CCGGGEEEEECSCCCH
T ss_pred EEEEEEE-CC-c--eEEEECCCc--hhHHHHHHHHHH-cC--CCHHHCcEEEECCCCc
Confidence 4677776 33 3 334677652 224566777765 67 766665 577899885
No 26
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=23.14 E-value=1.2e+02 Score=30.58 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=35.6
Q ss_pred EEEEEEEEeCCCCEEEEEEeccccccH--HHHHHHHHHHHHHhCCCCCCCcEEEEecc
Q 004083 66 RARTFIVAEPQGNRVVFVNLDACMASQ--LVTIKVLERLKARYGDLYTEQNVAISGIH 121 (775)
Q Consensus 66 ~ARAlvl~d~~~~rvv~Vs~Dl~~i~~--~v~~~V~~rL~~~~G~~i~~~nViIsATH 121 (775)
.+||+|+.+. ..-.+-..+ +-.+++.+.+++.+| +++++|++++|=
T Consensus 89 ~~rAvvvNSG--------nANA~TG~~G~~da~~~a~~~A~~lg--i~~~~VlvaSTG 136 (208)
T 1vra_A 89 KLQAMIVNSG--------IANACTGKRGLDDAYTMRAVGAETFH--IPEHYVAVTSTG 136 (208)
T ss_dssp EEEEEEEEEE--------ECCCSCHHHHHHHHHHHHHHHHHHHT--SCGGGEEEEEEE
T ss_pred ceEEEEEccC--------CccccccHHHHHHHHHHHHHHHHHhC--CChhHEEEeCCc
Confidence 5788888873 445555544 345788899999999 999999999984
No 27
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=21.98 E-value=3.4e+02 Score=24.84 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEE---ecccCCCCCCCccchhcccccccchhhHHHHHHHHHHHHHHHHHhcCCceE
Q 004083 93 LVTIKVLERLKARYGDLYTEQNVAIS---GIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKCIVQAHENLQPGS 169 (775)
Q Consensus 93 ~v~~~V~~rL~~~~G~~i~~~nViIs---ATHTHSgP~g~~~~~~~~l~~~Gf~~~y~~~lvd~Iv~AI~~A~~~l~Pa~ 169 (775)
.+...+.+.|++.++ .+.+++-|- ++.-|.| .+ +....+.-.|-.++--+.+++.|.+++.++....+-+.
T Consensus 31 ~lS~~Lid~La~i~~--~~~e~fTle~i~s~~i~~G-~~---MP~VeV~~fgRt~EqK~~la~~IT~av~~~~~~~e~V~ 104 (122)
T 1u9d_A 31 SLVPTLLNELSSLLS--TARNAFTFELINTQYFAEG-GV---YPMVEVLWFGREQQTQDQIAQVITDQIRQLLGADSHLA 104 (122)
T ss_dssp HHHHHHHHHHHHHHT--CCGGGCEEEECCCCCCCTT-CC---CCEEEEEESCCCHHHHHHHHHHHHHHHHHHHCTTCCCE
T ss_pred HHhHHHHHHHHHHHC--CCcccEEEEEeeeEEEecC-CC---CCEEEEEEcCCCHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 345566777788888 899988654 4555667 22 12223333355778889999999999999954444556
Q ss_pred EEEEE
Q 004083 170 IYINK 174 (775)
Q Consensus 170 l~~g~ 174 (775)
+-+..
T Consensus 105 Vif~e 109 (122)
T 1u9d_A 105 VVFIP 109 (122)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55544
No 28
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=21.73 E-value=79 Score=28.51 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 004083 92 QLVTIKVLERLKARYGDLYTEQNVAISGIHTHAGPG 127 (775)
Q Consensus 92 ~~v~~~V~~rL~~~~G~~i~~~nViIsATHTHSgP~ 127 (775)
.--+.+|+++|++.|+ .+++.|++-.-.||-|-+
T Consensus 38 tpsk~eirekLA~~~~--~~~d~Vvv~~~~T~fG~g 71 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLD--LNPETTVIQYIRSYFGSY 71 (107)
T ss_dssp CCCHHHHHHHHHHHHT--CCGGGEEEEEEECCTTCS
T ss_pred CCCHHHHHHHHHHHHC--CCCCEEEEEeeEecCCCc
Confidence 3346899999999999 899999999999999977
No 29
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=21.61 E-value=79 Score=28.28 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 004083 94 VTIKVLERLKARYGDLYTEQNVAISGIHTHAGPG 127 (775)
Q Consensus 94 v~~~V~~rL~~~~G~~i~~~nViIsATHTHSgP~ 127 (775)
-+.+|+++|++.|+ .+++.|++-.-.||-|-+
T Consensus 31 sk~eirekLAk~~~--~~~d~Vvv~~~~T~fG~g 62 (102)
T 1ywx_A 31 SIKDVKMKLVAVLN--ANKQVLVVDTLDQIFGKL 62 (102)
T ss_dssp CHHHHHHHHHHHHT--SCSTTEEEEEEEECSSSS
T ss_pred CHHHHHHHHHHHHC--CCCCEEEEEccEecCCCc
Confidence 45999999999999 899999999999999987
No 30
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=21.17 E-value=95 Score=27.41 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=36.6
Q ss_pred EEEEEeCCCCEEEEEEeccccc-c----HHHHHHHHHHHHHHhCCCCCCCcEEEEec
Q 004083 69 TFIVAEPQGNRVVFVNLDACMA-S----QLVTIKVLERLKARYGDLYTEQNVAISGI 120 (775)
Q Consensus 69 Alvl~d~~~~rvv~Vs~Dl~~i-~----~~v~~~V~~rL~~~~G~~i~~~nViIsAT 120 (775)
.+.+.. ..+..+++.+-.++. . ..+..++-+.|++++| ++.++|.|.-.
T Consensus 46 ~m~fgG-s~~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lg--i~~~riyI~f~ 99 (114)
T 3djh_A 46 LMAFGG-SSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLR--ISPDRVYINYY 99 (114)
T ss_dssp EEEETT-BCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEE
T ss_pred eEEEcC-cCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEE
Confidence 455543 357788888887765 3 3466788888899999 99999999753
No 31
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=20.77 E-value=1.2e+02 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=10.9
Q ss_pred EEEEEEEcCCCCCCcceeEEEee
Q 004083 730 HATVEWKIPESAVSGVYRIRHFG 752 (775)
Q Consensus 730 ~~ti~W~ip~~~~~G~YRi~~~G 752 (775)
.++|.|+.|... --.|+|.|..
T Consensus 44 Si~lsW~~p~~~-i~~Y~V~y~~ 65 (121)
T 2ocf_D 44 SLLISWDAPAVT-VRYYRITYGE 65 (121)
T ss_dssp CEEEEEECCSSC-CCEEEEEEEE
T ss_pred EEEEEEcCCCCC-CcEEEEEEEE
Confidence 355666554321 2236666653
No 32
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=20.54 E-value=66 Score=29.63 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=34.6
Q ss_pred CEEEEEEecccccc-----HHHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 004083 78 NRVVFVNLDACMAS-----QLVTIKVLERLKARYGDLYTEQNVAISGIHT 122 (775)
Q Consensus 78 ~rvv~Vs~Dl~~i~-----~~v~~~V~~rL~~~~G~~i~~~nViIsATHT 122 (775)
+.++++.+-.++.- ..+..++.+.|++++| |+.++|+|.-+-.
T Consensus 76 dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~Lg--I~~~riyI~f~d~ 123 (133)
T 3fwu_A 76 DPVACVRVEALGGYGPSEPEKVTSIVTAAITKECG--IVADRIFVLYFSP 123 (133)
T ss_dssp SSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHC--CCGGGEEEEEECC
T ss_pred CCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhC--cChhhEEEEEEEH
Confidence 45778887766542 4677889999999999 9999999987665
No 33
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=20.37 E-value=1.5e+02 Score=24.87 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=12.8
Q ss_pred ceEEEEEEEcCCCCCCcceeEEEee
Q 004083 728 QSHATVEWKIPESAVSGVYRIRHFG 752 (775)
Q Consensus 728 ~s~~ti~W~ip~~~~~G~YRi~~~G 752 (775)
.+.+++.|+.|.+ +--.|+|.|.-
T Consensus 15 ~~Sv~lsW~~p~~-~i~~Y~v~y~~ 38 (98)
T 3tes_A 15 EDSLRLSWTAPDA-AFDSFMIQYQE 38 (98)
T ss_dssp SSCEEEEEECCTT-SCSEEEEEEEE
T ss_pred CCeEEEEecCCcC-ccceEEEEEEE
Confidence 3346666665542 23456666653
No 34
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=20.27 E-value=86 Score=28.15 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=31.3
Q ss_pred CEEEEEEecccc-cc----HHHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 004083 78 NRVVFVNLDACM-AS----QLVTIKVLERLKARYGDLYTEQNVAISGIHT 122 (775)
Q Consensus 78 ~rvv~Vs~Dl~~-i~----~~v~~~V~~rL~~~~G~~i~~~nViIsATHT 122 (775)
..+++|.+.+.. .. ..+..++-+.|.+.+| +++++|+|.-+-.
T Consensus 55 dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~~~e~ 102 (125)
T 2wkb_A 55 EGYCFVRLTSIGGINRSNNSLLADKITKILSNHLS--VKPRRVYIEFRDC 102 (125)
T ss_dssp SSCEEEEEECC-----CTHHHHHHHHHHHHHHHHC--CCGGGEEEEEEC-
T ss_pred CCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEEEC
Confidence 457777777664 33 3578888889999999 9999999987544
Done!