Query 004084
Match_columns 775
No_of_seqs 176 out of 712
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 17:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 1E-191 2E-196 1628.5 72.1 627 77-751 12-638 (647)
2 PRK14696 tynA tyramine oxidase 100.0 6E-185 1E-189 1585.2 71.4 619 77-748 86-720 (721)
3 COG3733 TynA Cu2+-containing a 100.0 7E-186 1E-190 1504.5 58.7 624 77-748 28-653 (654)
4 PLN02566 amine oxidase (copper 100.0 6E-179 1E-183 1523.3 69.8 607 78-743 21-646 (646)
5 KOG1186 Copper amine oxidase [ 100.0 5E-156 1E-160 1304.9 55.8 637 65-750 14-658 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 3E-143 6E-148 1185.8 35.4 410 332-749 1-413 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 3.1E-23 6.7E-28 189.4 10.2 100 204-308 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.7 2.6E-17 5.6E-22 146.6 3.5 85 79-198 1-85 (86)
9 PRK11055 galM galactose-1-epim 16.4 1.4E+03 0.031 25.6 11.6 126 365-517 27-158 (342)
10 cd09019 galactose_mutarotase_l 15.8 1.3E+03 0.028 25.3 11.0 128 357-517 10-148 (326)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=1e-191 Score=1628.50 Aligned_cols=627 Identities=53% Similarity=0.944 Sum_probs=593.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004084 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (775)
Q Consensus 77 ~~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (775)
+.|||||||++||++|++|||++... ++.++|++|+|.||+|+.|+. | ..+. .++|
T Consensus 12 ~~HPLdpLt~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~---~------------~~g~------~~~R 67 (647)
T PRK11504 12 VSHPLDPLTAAEIEAAVAILRAEGLL---GESTRFVSIELAEPPKAEVLA---F------------DPGD------PIDR 67 (647)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccc---CCceEEEEeeccCCCHHHHHh---h------------hcCC------CCCc
Confidence 36999999999999999999998642 357999999999999999972 1 1222 2379
Q ss_pred eEEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004084 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (775)
Q Consensus 157 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~~~~~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~~ 236 (775)
+|+|++++..++.++|++|||+ .++|++|+.++++||+++.+|+.+|+++|++||+|+++|+||||+++
T Consensus 68 ~a~v~~~~~~~~~~~e~vVdL~-----------~~~V~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~ 136 (647)
T PRK11504 68 RAFVVLYDRATGKTYEAVVSLT-----------AGEVVSWEEIPGVQPPILLEEFEECEEVVRADPRWQAALAKRGITDF 136 (647)
T ss_pred EEEEEEEECCCCcEEEEEEECC-----------CCEEEEEEECCCccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCc
Confidence 9999999988899999999998 68999999999999999999999999999999999999999999988
Q ss_pred CeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCCCC
Q 004084 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316 (775)
Q Consensus 237 ~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~p~p~~~~~~~Y 316 (775)
++|+||||++||++..++.+|||+|++||+|.. +++|+|+||||||+++||+++|||++|+|.+.+|+|+.. ++|
T Consensus 137 ~~V~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~---~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~--~~Y 211 (647)
T PRK11504 137 DLVMVDPWSAGYFGEPEERGRRLARGLAFVRAD---PGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED--GNY 211 (647)
T ss_pred ceEEEcCccccccCCCCcCCceEEEEEEEEecC---CCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--CCC
Confidence 999999999999887655679999999999953 578999999999999999999999999998877877665 699
Q ss_pred CCCCcCCCCCCCCCCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEee
Q 004084 317 TRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVP 396 (775)
Q Consensus 317 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~Vp 396 (775)
.++.+. + .|+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|++ |||+||+|||||+||
T Consensus 212 ~~~~~~-~-~r~dlkPl~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~d~g~~-R~v~YrlslsEm~VP 288 (647)
T PRK11504 212 DPEFIP-P-LRTDLKPLEITQPEGPSFTVDGNEVEWQKWSFRVGFNPREGLVLHQVSYDDGGRE-RPILYRASLSEMVVP 288 (647)
T ss_pred ChhHcc-c-cccCCCCcceeCCCCCcEEEcCCEEEECCcEEEEecCCCCceEEEEEEEcCCCCc-ceEEEEeeeeeeeee
Confidence 987764 4 4999999999999999999999999999999999999999999999999998764 889999999999999
Q ss_pred cCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCccccccccCCCce
Q 004084 397 YGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFA 476 (775)
Q Consensus 397 Ygdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~~ 476 (775)
||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|.|+||||+|||++.+
T Consensus 289 Ygdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D~GilwkHt~~r~~~~ 368 (647)
T PRK11504 289 YGDPSPTHYWKNAFDAGEYGLGRLANSLELGCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEEDYGILWKHTDFRTGSA 368 (647)
T ss_pred cCCCCcchhhceeeeccccCCcccccccccCCCCCCCCEEcceEEecCCCCeEEecCEEEEeeecCCeeeeeeccCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCCCCCCCccccccCCCccccceeeEEEEeecc
Q 004084 477 EVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDME 556 (775)
Q Consensus 477 ~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~a~~HqH~f~~RlD~d 556 (775)
+++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++.+++..+||++|+|+++|++|||+||||||||
T Consensus 369 ~v~r~r~LVvr~I~TVgNYdYi~~w~F~qdG~Ie~eV~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~d 448 (647)
T PRK11504 369 EVRRSRRLVISFFATVGNYDYGFYWYFYQDGTIEFEVKLTGIVFTAAVPPGETPPYGTLVAPGLYAPNHQHFFNARLDMD 448 (647)
T ss_pred EEEeccEEEEEEEEecccccEEEEEEEecCceEEEEEEeeeEEEeeeeCCCccCCCcceecCCcccccceEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999977777899999999999999999999999999
Q ss_pred cCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCCceeEEEecCC
Q 004084 557 VDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGS 636 (775)
Q Consensus 557 VDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~ 636 (775)
||| .+|+|++.+++..+.++.||+|++|++++|++++|.+|+++++++++|+|+|+|++++|++|+|+||||+|++
T Consensus 449 IDG----~~Nsv~~~d~~~~p~~~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~ 524 (647)
T PRK11504 449 VDG----PGNSVYEVNSVPVPMGPDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGG 524 (647)
T ss_pred ccC----CCceEEEEEeEecCCCCCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCC
Confidence 998 5899999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEeeccccCCCCC
Q 004084 637 NCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWYVFGITHVPRLE 716 (775)
Q Consensus 637 ~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~neDiV~W~t~G~~HiPr~E 716 (775)
++.+|+.++|+..+||+|++||||||+|+|+|+||+|+|+||+.+ ++||++|+++||+|+|||||||||||+||+||+|
T Consensus 525 ~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~~Qs~~-~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~E 603 (647)
T PRK11504 525 NPPLLADPGSSIRQRAGFATHHLWVTPYDPDERYAAGDYPNQSAG-GDGLPAYIAADRSIENTDVVLWYTFGITHVPRPE 603 (647)
T ss_pred CccccCCCCchhhhcchhhhCcEEEeccCCCccccCCCCcccCCC-CCCHHHHhcCCCccccCceEEEEecCcccCCChh
Confidence 999999999999999999999999999999999999999999975 5799999999999999999999999999999999
Q ss_pred CCCCcccceeeEEEEeCCCCCCCCCCCCCCCcccC
Q 004084 717 DWPVMPVERIGFMLMPHGFFNCSPAVDVPPSACEL 751 (775)
Q Consensus 717 D~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~~~~ 751 (775)
||||||++++||+|||+|||++||+||+|++.+..
T Consensus 604 D~PvMP~~~~gf~L~P~nFF~~NPaldvp~s~~~~ 638 (647)
T PRK11504 604 DWPVMPVDYAGFKLKPVGFFDRNPALDLPPEPPAA 638 (647)
T ss_pred hCCCCccceEEEEEEcCCCCCCCccccCCCccccc
Confidence 99999999999999999999999999999998744
No 2
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=5.9e-185 Score=1585.16 Aligned_cols=619 Identities=30% Similarity=0.561 Sum_probs=571.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004084 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (775)
Q Consensus 77 ~~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (775)
+.|||||||++||++|++|||++... ...++|++|+|.||+|++|+. | +. .+.. .+|+|
T Consensus 86 ~~HPLdpLt~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~---~---------~~--~~~~----~~~~R 144 (721)
T PRK14696 86 RPHPLNALTADEIKQAVEIVKASADF---KPNTRFTEISLKEPDKEAVWA---F---------AL--ENKP----VDQPR 144 (721)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccc---CCceEEEEEEecCCCcHHHHH---H---------Hh--cCCC----CCCCc
Confidence 36999999999999999999998641 236999999999999999973 1 22 1211 24689
Q ss_pred eEEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004084 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (775)
Q Consensus 157 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~~~~~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~~ 236 (775)
+|+|+++. +..++|++|||+ .++|++|+.++++||+++.||+.+||++|++||+|+++|++|||+++
T Consensus 145 ~A~v~~~~--~~~~~e~vVdL~-----------~~~v~~~~~~~~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~ 211 (721)
T PRK14696 145 KADVIMLD--GKHVIEAVVDLQ-----------NNKVLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDV 211 (721)
T ss_pred EEEEEEEe--CCCEEEEEEECC-----------CCEEEEEEeCCCccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCC
Confidence 99999985 456999999998 68999999999999999999999999999999999999999999989
Q ss_pred CeEEEeeccccccCCCCC--CCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCC
Q 004084 237 DLVMVDAWCVGYYSDADA--PSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLR 314 (775)
Q Consensus 237 ~~V~~dpw~~G~~~~~~~--~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~p~p~~~~~~ 314 (775)
++|+||||++||++..++ +++||+|++||++. +++|+||||||||+++||++++||++|+|++..+.|... +
T Consensus 212 ~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~~~----~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~--~ 285 (721)
T PRK14696 212 KKVITTPLTVGYFDGKDGLKQDARLLKVVSYLDV----GDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA--R 285 (721)
T ss_pred CEEEEeCccccccCCcCccccCceEEEEEEEEcC----CCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC--c
Confidence 999999999999877653 47999999999973 578999999999999999999999999998765544433 6
Q ss_pred CCCCCCcCCCCCCCCCCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEE
Q 004084 315 NYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMV 394 (775)
Q Consensus 315 ~Y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~ 394 (775)
+|.++.. .|+++||++|+||||+||+|+|++|+||||+||+|||+||||+||||+|+|+|++ ||||||+|||||+
T Consensus 286 ~Y~~~~~----~r~~lKPl~i~QPeG~sF~v~G~~V~W~~W~f~vgf~~ReGlvL~dv~y~d~g~~-R~v~YrlSlsEm~ 360 (721)
T PRK14696 286 PYDGRDR----VAPAVKPLQIIEPEGKNYTITGDTIHWRNWDFHLSLDSRVGPMLSTVTYNDNGTK-RKVMYEGSLGGMI 360 (721)
T ss_pred CCCcccc----ccCCCCCceeeCCCCCCEEEcCCeEEECCcEEEEecCCCcceEEEEEEEcCCCcc-eeEEEEeeeeeEE
Confidence 9988652 4999999999999999999999999999999999999999999999999998774 8999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCccccccccCCC
Q 004084 395 VPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTG 474 (775)
Q Consensus 395 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g 474 (775)
||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|+|++|||++|+++
T Consensus 361 VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D~G~~wkHt~~~~~ 440 (721)
T PRK14696 361 VPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLDETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQP 440 (721)
T ss_pred EeCCCCCchhhhceeeeccccCCcccccccccCCCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeecCCCceeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred ceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCC--------CCCCCccccccCCCccccce
Q 004084 475 FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQP--------GESRKYGTMIAPSLYAPVHQ 546 (775)
Q Consensus 475 ~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~--------~~~~~yGt~V~p~v~a~~Hq 546 (775)
++++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++.. +++.+|||+|+|+++|++||
T Consensus 441 -~~~~r~r~LVvr~i~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~Hq 519 (721)
T PRK14696 441 -NVSTERRELVVRWISTVGNYDYIFDWVFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQ 519 (721)
T ss_pred -cceEeeeEEEEEEEEEecceeEEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccce
Confidence 789999999999999999999999999999999999999999999988533 34468999999999999999
Q ss_pred eeEEEEeecccCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCC
Q 004084 547 HFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQ 626 (775)
Q Consensus 547 H~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~ 626 (775)
||||||||||||| .+|||++.+++..+.+..||++++|+++++++++|.+|++++++.+.|+ |+|++++|++|+
T Consensus 520 H~f~~RlD~dIDG----~~Nsv~~~d~~~~p~~~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~ 593 (721)
T PRK14696 520 HIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGN 593 (721)
T ss_pred EEEEEEEcccccC----CcceEEEEeeeEccCCCCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCC
Confidence 9999999999998 6999999999988877899999999999999999999999999999996 899999999999
Q ss_pred ceeEEEecCC--CCC----CCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceecCC
Q 004084 627 LTGYKLVPGS--NCL----PLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESD 700 (775)
Q Consensus 627 p~gYkl~p~~--~~~----~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~neD 700 (775)
|+||||+|+. +++ +++.|+|+..+||+|++||||||+|+|+|+||+|+|+||+++ ++||++|+++||+|+|+|
T Consensus 594 pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~~~lwVT~y~d~E~~aaG~y~~qs~g-~~gl~~w~~~~e~i~n~D 672 (721)
T PRK14696 594 PVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTD 672 (721)
T ss_pred eeeEEEecCCCCccccccccccCCcchhhhhhhhhhCcEEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCcccCCc
Confidence 9999999974 432 378999999999999999999999999999999999999986 579999999999999999
Q ss_pred cEEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCc
Q 004084 701 IVLWYVFGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPSA 748 (775)
Q Consensus 701 iV~W~t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~ 748 (775)
||+|||||+||+||+|||||||++++||+|||+||||+||+||+|+..
T Consensus 673 iV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~nFFd~nPaldvp~~~ 720 (721)
T PRK14696 673 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGLLKKD 720 (721)
T ss_pred eEEEEecCcccCCchhhCCCccceeeeEEEEcCCCCCCCcccCCCCCC
Confidence 999999999999999999999999999999999999999999999864
No 3
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.5e-186 Score=1504.53 Aligned_cols=624 Identities=47% Similarity=0.809 Sum_probs=592.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004084 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (775)
Q Consensus 77 ~~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (775)
.+|||||||++||++|++|||++... .+.++|.+|+|.||+|++++. +...+ .++.|
T Consensus 28 ~shPLdpLt~~Eik~aVEivr~e~~~---~~~~~F~~VtL~eP~K~~v~~---------------f~~~~-----~~ieR 84 (654)
T COG3733 28 RSHPLDPLTADEIKQAVEIVRAEADF---KKNFAFTEVTLLEPDKQEVLA---------------FRLEN-----KPIER 84 (654)
T ss_pred cCCCCCccCHHHHHHHHHHHHhhccc---CCceeeEEEEecCCchHHHHH---------------HHhcC-----CCcch
Confidence 47999999999999999999998764 368999999999999999973 12222 25789
Q ss_pred eEEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004084 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (775)
Q Consensus 157 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~~~~~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~~ 236 (775)
.|++++|..+...++|++|+|+ +.+|.+|+.+++++|+|+.+||..||.+++++|+|+|||+||||+|+
T Consensus 85 ~a~~~~~~~~~~~i~EavV~L~-----------~nkv~~~q~i~~a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~ 153 (654)
T COG3733 85 KALAVVYELDGKGIYEAVVDLD-----------NNKVLSWQPIKDAHPMITLDEFASVENIVRNDPRFIEACKKRGITDM 153 (654)
T ss_pred hhhhheeeccCCceEEEEEEcc-----------cceeeeeEeccccCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchh
Confidence 9999999998889999999998 68999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCCCC
Q 004084 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316 (775)
Q Consensus 237 ~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~p~p~~~~~~~Y 316 (775)
++|+||||+.||+++++..+||+++.+||+|.. .++|+|+|||+||+++||+++++|++|+|+.++|+|... .+|
T Consensus 154 ~~V~vdpwt~G~~~~~~~~grr~~~~~m~yr~~---e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~~--~ny 228 (654)
T COG3733 154 DQVIVDPWTAGYFDEEGLKGRRRALKVMWYRDV---EDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMKR--ANY 228 (654)
T ss_pred hceEeccccccccCccccccceeEEEEEEEEec---CCCCcccccccceeeEEEcccCeEEEecCCCcccccccc--cCc
Confidence 999999999999987777899999999999974 468999999999999999999999999999999999854 688
Q ss_pred CCCCcCCCCCCCCCCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEee
Q 004084 317 TRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVP 396 (775)
Q Consensus 317 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~Vp 396 (775)
..+.+. . .+.++||++|.||||.||+|+|++|+||+|+||+|||+|||||||||+|+|+|+ .|+|+||+||+||+||
T Consensus 229 ~~e~i~-~-~~~~~KpiqI~QPeg~sf~i~G~~i~W~~w~frig~n~ReGlvl~dVsY~D~g~-~Rpv~YraSl~eMvVP 305 (654)
T COG3733 229 GRERIG-K-ALGPVKPIQIIQPEGKSFTITGDEISWQNWRFRIGMNPREGLVLSDVSYNDNGN-KRPVLYRASLVEMVVP 305 (654)
T ss_pred CHHHhh-h-hcCCCCCceeecCCCceEEEecCEEEEeeeeEEEeccccCCeEEEEEEEcCCCc-cceEEEEeeecceeee
Confidence 765543 2 367799999999999999999999999999999999999999999999999886 7999999999999999
Q ss_pred cCCCCCccccceeeecCCCCCccCCCCCCCCCCCCC-CeEEeeeeeecCCCCeEEeeceEEEeeccCCccccccccCCCc
Q 004084 397 YGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLG-YIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGF 475 (775)
Q Consensus 397 Ygdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg-~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~ 475 (775)
||||+++|++|++||+||||+|.++++|++| ||.| .|+|||+++++.+|+|++|||||||||+|+|+||||+|||++.
T Consensus 306 YGdPd~~h~~K~~fD~GeYglG~l~~plalG-dc~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed~GvlwKH~d~rs~~ 384 (654)
T COG3733 306 YGDPDPGHYFKNAFDSGEYGLGTLTSPLALG-DCAGSNIVLLDATFANYTGEPMTIPNAICIHEEDAGVLWKHQDFRSPN 384 (654)
T ss_pred cCCCCcchhhhhcccccccCccccccchhhc-ccccceeEEEeeeeeccCCceEEecceeEEEeccccceeeehhhcCCc
Confidence 9999999999999999999999999999999 9999 9999999999999999999999999999999999999999999
Q ss_pred eeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCCCCCCC-ccccccCCCccccceeeEEEEee
Q 004084 476 AEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRK-YGTMIAPSLYAPVHQHFFIARMD 554 (775)
Q Consensus 476 ~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~-yGt~V~p~v~a~~HqH~f~~RlD 554 (775)
.+++|.|.||||+|+||+||||+|+|+|||||+||+|++||||+++.+..+++..+ |||+|.|++.|++||||||+|||
T Consensus 385 ~~trr~r~LVVs~i~Tv~NYdYg~~WifhqDGtIe~e~klTGIin~~a~~e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLd 464 (654)
T COG3733 385 VETRRARGLVVSWIATVANYDYGFYWIFHQDGTIEFEAKLTGIINTKAIAEGQPDPTYGTLVDPNVVGHTHQHFFNARLD 464 (654)
T ss_pred cceeeccceEEEEEEeecccceeEEEEEEcCceEEEeecceeEEEeehhcCCCCCCCccceeccccccccceeEEEeeec
Confidence 99999999999999999999999999999999999999999999999998887655 99999999999999999999999
Q ss_pred cccCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCCceeEEEec
Q 004084 555 MEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVP 634 (775)
Q Consensus 555 ~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p 634 (775)
||||| ..|||+++++...|.+++||+||+|+++++++++|++|.+++|+.+.|+|+|+|++|+|..|+|++|||+|
T Consensus 465 m~VDG----~~Nsv~e~nv~~~P~~~~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~ 540 (654)
T COG3733 465 MDVDG----ERNSVVEMNVVGAPITKGNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIP 540 (654)
T ss_pred ccccC----cccceEEEEcccCCCCCCCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEec
Confidence 99998 69999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEeeccccCCC
Q 004084 635 GSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWYVFGITHVPR 714 (775)
Q Consensus 635 ~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~neDiV~W~t~G~~HiPr 714 (775)
+.+..+++.++|.+.+|++|++||||||+|++.|+||+|+|+||+++ ++||++|+++||||+|||||+|||||+||+||
T Consensus 541 ~~~~~~~~~~gs~v~~R~~Fa~~hlwVT~y~p~ErYp~GdYpnq~~~-~~GLp~yi~~d~sl~neDlVvW~T~GitHv~r 619 (654)
T COG3733 541 GHNPTPPVAEGSQVRHRAGFATKHLWVTPYHPGERYPAGDYPNQSAG-GKGLPEYIKDDRSLDNEDLVVWHTFGITHVPR 619 (654)
T ss_pred CCCCCCcCCCCcchhhhhhhccceEEEeccCcccccCCCCCCCCCCC-CCChhhhhhccccccCcceEEEEecCceeccC
Confidence 99999999999999999999999999999999999999999999976 57999999999999999999999999999999
Q ss_pred CCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCc
Q 004084 715 LEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPSA 748 (775)
Q Consensus 715 ~ED~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~ 748 (775)
+|||||||++++||.|+|+||||+||+||+|.+.
T Consensus 620 pED~PvMP~e~~gf~L~P~gFFd~nPai~lp~~~ 653 (654)
T COG3733 620 PEDWPVMPVEWAGFLLKPRGFFDRNPAIDLPRKD 653 (654)
T ss_pred cccCCccccchhceEeccccccccCcccCCCccC
Confidence 9999999999999999999999999999999764
No 4
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=5.5e-179 Score=1523.33 Aligned_cols=607 Identities=32% Similarity=0.555 Sum_probs=552.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCce
Q 004084 78 SHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRR 157 (775)
Q Consensus 78 ~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 157 (775)
.|||||||++||++|++|||++.... ...++|++|+|.||+|+.|+. | +..++.+. +.|+|+
T Consensus 21 ~HPLdpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------~~~~~~~~----~~p~R~ 82 (646)
T PLN02566 21 YHPLDPLNPQEINKIRLIVQKSHLGN--LPNLTFHFLDLEEPEKRDVLK---W---------LSSNPSNK----SPPPRR 82 (646)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccCC--CCceEEEEEEccCCChHHHHh---h---------hhcccCCC----CCCCcE
Confidence 69999999999999999999986421 135999999999999999983 1 33344343 246899
Q ss_pred EEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeCCCC-CCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004084 158 ARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDI-QPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (775)
Q Consensus 158 A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~~~~-~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~~ 236 (775)
|+|++ ..++.++|++|||+ .++|++|+.+++. ||+++.+|+.+||++|++||.|+++|++|||+.
T Consensus 83 a~v~~--~~~~~~~e~vVdl~-----------~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~- 148 (646)
T PLN02566 83 AKVVV--RAGGETYELIVDLA-----------TGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNI- 148 (646)
T ss_pred EEEEE--ecCCCEEEEEEECC-----------CCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCc-
Confidence 99655 44466999999998 6899999999988 999999999999999999999999999999954
Q ss_pred CeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCCCC
Q 004084 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316 (775)
Q Consensus 237 ~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~p~p~~~~~~~Y 316 (775)
++|+||||++||++. + +++|++|++||+|. +++|+||||||||+++||++++||++|++....|+|+... +
T Consensus 149 ~~V~~dpw~~G~~~~-~-~~~R~~q~~~y~r~----~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~--~- 219 (646)
T PLN02566 149 SEVSCIPFTVGWYGE-T-VTKRALKISCFYRG----GSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEG--T- 219 (646)
T ss_pred ceEEEeCcccccCCC-C-CCcEEEEEEEEEcC----CCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCC--C-
Confidence 789999999999876 3 37999999999993 5789999999999999999999999999886556665431 1
Q ss_pred CCCCcCCCCCCCCCCCccccCCC-CCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCC-eeeEEEEeeeeeEE
Q 004084 317 TRGETRGGVDRSDVKPLQIVQPE-GPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRG-RRSVAHRLSFVEMV 394 (775)
Q Consensus 317 ~~~~~~~~~~r~dlkPl~i~QPe-G~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g-~R~I~YrlSlsEm~ 394 (775)
+ .|+|+||++|+||| |+||+|+|++|+||||+||||||+|||||||||+|+|.+.| +|||+||+|||||+
T Consensus 220 -------~-~R~d~kPl~i~QPegG~sF~v~G~~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~ 291 (646)
T PLN02566 220 -------D-FRTKHKPFSFPCNVSDSGFTILGHRVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETF 291 (646)
T ss_pred -------C-CCcCCCCccccCCCCCCcEEEcCCEEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeE
Confidence 1 38999999999999 59999999999999999999999999999999999986532 48999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccC-CccccccccC-
Q 004084 395 VPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDH-GMLWKHQDWR- 472 (775)
Q Consensus 395 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~-GilwkH~d~r- 472 (775)
||||||+++|+||+|||+||||+|.+||+|++||||||+|+|||+++++++|+|++++|||||||+|+ |+||||++++
T Consensus 292 VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~ 371 (646)
T PLN02566 292 VPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINV 371 (646)
T ss_pred EecCCCCccccccceeeccccCccccccccccCCCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 5999999985
Q ss_pred ------CCceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCC--CCC---CCccccccCCCc
Q 004084 473 ------TGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQP--GES---RKYGTMIAPSLY 541 (775)
Q Consensus 473 ------~g~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~--~~~---~~yGt~V~p~v~ 541 (775)
+|.++ .+||||+|+|||||||||||+|||||+||+||+|||||+|.++.. ++. .+|||+|+|+++
T Consensus 372 ~~~~~r~g~~~----~~LVvr~I~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~ 447 (646)
T PLN02566 372 PGRVIRSGEPE----ISLVVRMVATLGNYDYILDWEFKKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTI 447 (646)
T ss_pred CccccccCcce----EEEEEEEEEEeecccEEEEEEEecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcc
Confidence 44444 599999999999999999999999999999999999999877653 322 589999999999
Q ss_pred cccceeeEEEEeecccCCCCCCcccEEEEEeeeecCC---CCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeC
Q 004084 542 APVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKP---GGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNT 618 (775)
Q Consensus 542 a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~ 618 (775)
|++|||+||||||||||| .+|||++.+++..+. ++.||++++|+++++.+++|.+|++++++++ |.|+|+|+
T Consensus 448 a~~HqH~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~~~np~g~~~~~~~~~~~tE~~a~~~~~~~~-~~~~i~N~ 522 (646)
T PLN02566 448 AVNHDHFLTYYLDLDVDG----NGNSFVKAKLQTARVTAVNASSPRKSYWTVVKETAKTEAEGRIRLGSEP-AELLIVNP 522 (646)
T ss_pred cccceEEEEEEEcccccC----CCCeEEEEeeEEccCCCCCCCCCCcceEEEEEEEecchhhhhhccCCCC-ceEEEECC
Confidence 999999999999999997 699999999987433 3689999999999999999999999999986 66999999
Q ss_pred CCcCCCCCceeEEEecCCCCCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceec
Q 004084 619 RTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEE 698 (775)
Q Consensus 619 ~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~n 698 (775)
+++|++|+|+||||+|++++.+|+.++|+..+||+||+||||||+|+|+|+||+|+|+||+++ +.||++|+++||+|+|
T Consensus 523 ~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~~qs~g-~~gl~~w~~~~~~I~~ 601 (646)
T PLN02566 523 NKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVTAYNKSERWAGGFYADRSRG-DDGLAVWSSRNREIEN 601 (646)
T ss_pred CCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEecCCCcccCCCCcCccCCCC-CCChhhhhcCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999986 5799999999999999
Q ss_pred CCcEEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCC
Q 004084 699 SDIVLWYVFGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVD 743 (775)
Q Consensus 699 eDiV~W~t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nPalD 743 (775)
||||+|||||+||+||+|||||||++++||+|||+||||+||+|.
T Consensus 602 ~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaL~ 646 (646)
T PLN02566 602 KDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPLLR 646 (646)
T ss_pred CceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999983
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-156 Score=1304.95 Aligned_cols=637 Identities=37% Similarity=0.612 Sum_probs=572.6
Q ss_pred CCccccccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcC
Q 004084 65 SSKGITAMPRPQTSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTK 144 (775)
Q Consensus 65 ~~~~~~~~~~~~~~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~ 144 (775)
...|+..+..+.+.|||||||+.||.+.+.||+.+..+. ......|+.|.|.||.|+.++. +.+
T Consensus 14 ~~~~~~~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s-~~~~~~~~av~l~eP~K~~vls---------------w~~ 77 (670)
T KOG1186|consen 14 LGPGLVSASQERPSHPLDPLTELELPKVAAILAHLDPGS-PHPAFEAVAVVLFEPQKQPVLS---------------WLS 77 (670)
T ss_pred cccccccccCCCCCCCcCccchhhhhHHHHHHhhcccCC-CCCceEEEEEEecCCCcCccce---------------ecc
Confidence 446777888888999999999999999999999887543 2456889999999999999872 233
Q ss_pred CCCCCCCCCCCceEEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeC-CC-CCCCCCHHHHHHHHHHHHcCh
Q 004084 145 GGPVIPSKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVV-PD-IQPPMDAEEYAQCEAAVKAFP 222 (775)
Q Consensus 145 ~~~~~p~~~P~R~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~-~~-~~pp~~~~E~~~~e~~~~~~p 222 (775)
++ .+ ++|+|||++|. +..+.++|++|||+ +++|++.+.. .+ +.|.++.+|+.+.++++++.+
T Consensus 78 -gP-~~-~pPpRRA~vVa--R~gg~t~e~~vdls-----------t~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~ 141 (670)
T KOG1186|consen 78 -GP-LP-HPPPRRALVVE--RHGGPTPEARVDLS-----------TAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFK 141 (670)
T ss_pred -CC-CC-CCCcceeEEEe--ecCCCceEEEEecc-----------hheeeecccccccCccccccHHHHHhhhcCCcccc
Confidence 33 12 57899999985 44578999999998 6788887766 45 689999999999999999999
Q ss_pred hHHHHHHHcCCCCCCeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecC
Q 004084 223 PFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDR 302 (775)
Q Consensus 223 ~~~~a~~~rgl~~~~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~ 302 (775)
.|...+.+||+... .|+|.+|..||+++.++..+||++..||++.+ ..|+|.+||+|++++||+++|||++++|+
T Consensus 142 ~f~~si~~rG~~~s-~vic~~~t~Gwyge~~~g~~Rlik~~~f~~~~----~~n~y~rpieg~yi~vdld~~kVi~~~d~ 216 (670)
T KOG1186|consen 142 PFCPRGLRRGDRMS-WVVCYPNTSGWYGEHPVGLERLIKHMAFYRAG----WVNQQVRPIEGFYIIVDLDEMKVIAGRDR 216 (670)
T ss_pred ccchhhhccCCcce-eEEEecceeeecccCCcchhhhhhhcccccCC----CeeEEEeecCceEEeeccccceEEEEecc
Confidence 99999999998655 47788999998888766668999999999985 47999999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCcCCCCCCCCCCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCee
Q 004084 303 KLVPLPPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRR 382 (775)
Q Consensus 303 ~~~p~p~~~~~~~Y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R 382 (775)
..+|+|.... .+|..+.. . ..+||+..+||||||+|+|+.|+|++|+||+||+.|+||+|+||+|.|.+. .|
T Consensus 217 ~~iP~P~~~G-t~~Rs~~~-----p-~~~pLq~isPeGP~FrVeG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d~~~-~r 288 (670)
T KOG1186|consen 217 VRVPLPKAKG-TELRSSVL-----P-GFKPLQPISPEGPGFRVEGHLVRWANWEFHIGFDVRAGLVISDASFFDEDV-YR 288 (670)
T ss_pred cccccCCCCC-CccccccC-----C-CCccccccCCCCCceEEEEEEEEeeccEEEEccCCccceEEEEEEEcCCCc-ee
Confidence 8888876542 45533221 1 334488778999999999999999999999999999999999999999876 79
Q ss_pred eEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccC
Q 004084 383 SVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDH 462 (775)
Q Consensus 383 ~I~YrlSlsEm~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~ 462 (775)
+|+||+|+|||+||||||+++||+|+|||.||||+|..|++|++|||||++|+|||++|+..+|+|.+++|||||||+++
T Consensus 289 ~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~ 368 (670)
T KOG1186|consen 289 RVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLAPGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYA 368 (670)
T ss_pred eEEEEeeeeeeEEecCCCCchhheeeeecccccCCCccccccccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-ccccccc-cCCC--ceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCCCCC-CCcccccc
Q 004084 463 G-MLWKHQD-WRTG--FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGES-RKYGTMIA 537 (775)
Q Consensus 463 G-ilwkH~d-~r~g--~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~~~~-~~yGt~V~ 537 (775)
| +||||++ +..| ..+++++++|||||++|||||||||||+||+||.||++|+|||||+++++..++. ..|||+|+
T Consensus 369 G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~~F~~~G~ie~~v~lTG~l~~~~~~~~~~~~~~Gt~v~ 448 (670)
T KOG1186|consen 369 GDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDYEFKPSGVIEAGVGLTGVLEVKPVEYGETSDIYGTIVA 448 (670)
T ss_pred CCceeeccccccCCCcccccccccEEEEEEeeeecccceEEEEEEecCCeEEEEEeeEEEEEeeccccccccccccceec
Confidence 9 7999999 4555 6899999999999999999999999999999999999999999999999987765 68999999
Q ss_pred CCCccccceeeEEEEeecccCCCCCCcccEEEEEeeeecC-CCCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEE
Q 004084 538 PSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEK-PGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVR 616 (775)
Q Consensus 538 p~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~-~~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~ 616 (775)
++++|++|||+|+|||||||||. .+|++++..+.... .+..+++++.+.++++.+++|++|+.+++..+++.|.|+
T Consensus 449 ~~~ig~~H~H~~~~rldldvdG~---~n~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~ 525 (670)
T KOG1186|consen 449 ENTIGVNHDHFVTFRLDLDVDGT---KNNSFVRDELVTPRTPPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVV 525 (670)
T ss_pred ccccccccceEEEEEEcccccCC---ccceeeeeeEeecccCCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEE
Confidence 99999999999999999999984 36666665554322 223478888899999999999999999999999999999
Q ss_pred eCCCcCCCCCceeEEEecCCCCCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCce
Q 004084 617 NTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPL 696 (775)
Q Consensus 617 N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI 696 (775)
|++++|++|+|+||||+|++++.+|+.++++.++||+|++||||||+|+++|.||||.|.+|++. +++|+.|.++|++|
T Consensus 526 n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~l~VT~y~~~E~~~~g~y~~~~~~-~~tl~~w~~~nr~i 604 (670)
T KOG1186|consen 526 NPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYNLWVTPYNESEVWASGLYADQSQG-DDTLAVWSQRNRSI 604 (670)
T ss_pred CCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcceeEEeccCccccCcccccccCCCC-CCcceehhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999964 68999999999999
Q ss_pred ecCCcEEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCccc
Q 004084 697 EESDIVLWYVFGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPSACE 750 (775)
Q Consensus 697 ~neDiV~W~t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~~~ 750 (775)
+|+|||+|||+||||||++||||+||+...||.|||+|||++||+|++|++.+.
T Consensus 605 en~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~NFF~~nP~l~~~p~~~~ 658 (670)
T KOG1186|consen 605 ENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRPTNFFERNPSLKSPPSKYV 658 (670)
T ss_pred ccCceEEEEEcceeecCchhcCCCCcccCCceeeccccccccCccccCCCccee
Confidence 999999999999999999999999999999999999999999999999999766
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=2.8e-143 Score=1185.85 Aligned_cols=410 Identities=55% Similarity=0.959 Sum_probs=374.5
Q ss_pred CccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeee
Q 004084 332 PLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFD 411 (775)
Q Consensus 332 Pl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~VpYgdp~~p~~~k~afD 411 (775)
||+|+||||+||+|+|++|+||+|+|||+|++||||+||||+|+|. +++|+||+|||||+||||||+++|++|+|||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~~---~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~D 77 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGE---RRPILYRLSLQEMVVPYGDPDPPHHRKNAFD 77 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETTE---EEEEEEEEEEEEEEEEEE-SSTTHHH-EEEH
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeCC---CccEEEEEeeeeeeeecCCCCchhhcccccc
Confidence 8999999999999999999999999999999999999999999852 1269999999999999999999999999999
Q ss_pred cCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCccccccccCCCceeEeeeeEEEEEEeee
Q 004084 412 AGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRRLTVSFICT 491 (775)
Q Consensus 412 ~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T 491 (775)
+||||||.++++|++||||||+|+|||+++++++|+|++++|||||||+|.|+||||++++++..+++|+|+||||+|+|
T Consensus 78 ~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~G~l~kH~~~~~~~~~~~r~~~LVvr~i~T 157 (413)
T PF01179_consen 78 SGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDAGPLWKHTDYRTGRFEVRRSRRLVVRTIST 157 (413)
T ss_dssp HHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEEEEEEEEEETTSSEEEEEEEEEEEEEEEEE
T ss_pred ccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecCCchhhcccccccccceeeccEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccceeEEEEEccCCcEEEEEEEeeEEEeeecCCCCCCCccccccCCCccccceeeEEEEeecccCCCCCCcccEEEEE
Q 004084 492 VANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEV 571 (775)
Q Consensus 492 VgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~ 571 (775)
||||||||||+|||||+||++|+|||||+++++.+++..+||++|+|+++|++|||+|+||||||||| .+|+|+++
T Consensus 158 V~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG----~~Nsv~~~ 233 (413)
T PF01179_consen 158 VGNYDYIFDWIFYQDGSIEVEVRATGILSTSPYAPGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDG----TNNSVVEV 233 (413)
T ss_dssp ETTEEEEEEEEEETTS-EEEEEEEEE---EEETTTTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTS----SEEEEEEE
T ss_pred ccccceEEEEEEecCceEEEEEEeeeEEEEEecCCCCccCCcceEcCCccccceeEEEEEEEccccCC----CCCeEEEE
Confidence 99999999999999999999999999999999988888899999999999999999999999999997 69999999
Q ss_pred eeeecCC---CCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCCceeEEEecCCCCCCCCCCChhh
Q 004084 572 DVKVEKP---GGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATV 648 (775)
Q Consensus 572 ~~~~~~~---~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~ 648 (775)
+++.++. +..||++++|++++|++++|++|+++++++++|+|+|+|++++|++|+|+||||+|++++.+|+.|+|+.
T Consensus 234 d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~~~~s~~ 313 (413)
T PF01179_consen 234 DIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLAPPDSWV 313 (413)
T ss_dssp EEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SSSTTSCH
T ss_pred EeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccCCCcchh
Confidence 9987754 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEeeccccCCCCCCCCCcccceeeE
Q 004084 649 FRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWYVFGITHVPRLEDWPVMPVERIGF 728 (775)
Q Consensus 649 ~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~neDiV~W~t~G~~HiPr~ED~PvMP~~~~~f 728 (775)
.+||+|++||||||||+|+|+||+|+|+||++. ++||++|+++||+|+|||||+|+|||+||+||+|||||||++++||
T Consensus 314 ~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~-~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~gf 392 (413)
T PF01179_consen 314 ARRASFARHHLWVTKYKDSERYASGEYNNQSPG-DVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPVEWLGF 392 (413)
T ss_dssp HHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SS-SSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEEEEEEE
T ss_pred hhccccccCceEEeecCCCccCCCCCCccCCCC-CCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCCcEEEE
Confidence 999999999999999999999999999999986 4899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCcc
Q 004084 729 MLMPHGFFNCSPAVDVPPSAC 749 (775)
Q Consensus 729 ~LrP~nFFd~nPalDvP~s~~ 749 (775)
+|||+|||++||+||+|++.|
T Consensus 393 ~L~P~nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 393 MLKPFNFFDRNPALDVPPSVQ 413 (413)
T ss_dssp EEEEESSSSSSTTTTCTTC--
T ss_pred EEEcCCCCCCCccccCCCCCC
Confidence 999999999999999999875
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.89 E-value=3.1e-23 Score=189.38 Aligned_cols=100 Identities=47% Similarity=0.756 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCCCeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCC
Q 004084 204 PPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVE 283 (775)
Q Consensus 204 pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~~~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~ 283 (775)
|||+.+|+.+++++++++|+|+++|++|||++++.|+||||++|+++..+ +++|++|++||+|.. ..|+|+|||+
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~-~g~Rl~~~~~~~r~~----~~n~YahPi~ 75 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEES-EGRRLTWVLCFMRDS----GNNFYAHPIE 75 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSST-TTS-EEEEEEEE-SS----TS-GGGSEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCC-CCceEEEEEEEEEcC----CCcccccccC
Confidence 78999999999999999999999999999999999999999999988765 689999999999974 2399999999
Q ss_pred CeEEEEeccCcEEEEEecCc-cccCC
Q 004084 284 GIYVLVDMQNMVVIEFEDRK-LVPLP 308 (775)
Q Consensus 284 gl~~~vD~~~~~vv~i~d~~-~~p~p 308 (775)
||+++||++++||++|++++ .+|+|
T Consensus 76 gl~~~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 76 GLEPLVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp CEEEEEETTTTEEEEEEEEEEEETT-
T ss_pred ceEEEEECCCCEEEEEEeCCceeeCC
Confidence 99999999999999999988 66765
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.67 E-value=2.6e-17 Score=146.56 Aligned_cols=85 Identities=46% Similarity=0.694 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCceE
Q 004084 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRRA 158 (775)
Q Consensus 79 HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~A 158 (775)
|||||||++||++|+++|+++... .+++++|.+|+|.||+|++|+. +++++. +|+|+|
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~--~~~~~~F~~I~L~EP~K~~vl~---------------~~~~~~-----~p~R~A 58 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPL--AGEKNRFRSIELQEPPKAEVLA---------------FERGGP-----PPPRRA 58 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGT--TTTSEEEEEEEEE---HHHHHH---------------HHCCTT-----TS-EEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcccc--CCCCeEEEEEEeCCCCHHHHhc---------------cccCCc-----CCCeEE
Confidence 999999999999999999998722 2468999999999999999973 245553 479999
Q ss_pred EEEEEECCCCcEEEEEEeCCccccccccccccccEEEeee
Q 004084 159 RLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRV 198 (775)
Q Consensus 159 ~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~ 198 (775)
+|+++++.+. +|++|||+ .|+|++|+.
T Consensus 59 ~vv~~~~~~~--~e~vVdl~-----------~~~V~~~~~ 85 (86)
T PF02727_consen 59 RVVVYDGGQS--YEAVVDLT-----------SGKVVSWKE 85 (86)
T ss_dssp EEEEEETSSS--SEEEEEEE-----------EEECSCEEE
T ss_pred EEEEEECCee--eeEEEECc-----------CCccccCcc
Confidence 9999998765 89999997 688988875
No 9
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=16.38 E-value=1.4e+03 Score=25.56 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=67.0
Q ss_pred cceeEEeeEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecC
Q 004084 365 EGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNF 444 (775)
Q Consensus 365 eGlvL~dV~y~d~g~g~R~I~YrlSlsEm~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~ 444 (775)
-|-.|..+.+.|+. | .+.+++.-|.++.. +...+.| .| -=+|+.||.+.-|.=.....+| ....
T Consensus 27 ~GA~i~~l~vpd~~-g--------~~~dvvlg~~~~~~-y~~~~~~-~G-a~iGr~anRI~~g~f~~~G~~y----~L~~ 90 (342)
T PRK11055 27 WGATWLSCRVPLSD-G--------SVREVLLGCASPED-YPDQAAY-LG-ASVGRYANRIANSRFTLDGETY----QLSP 90 (342)
T ss_pred cCcEEEEEEeECCC-C--------CEeeeEECCCCHHH-HhhCCCc-cC-ceeCCcCCcccCCEEEECCEEE----Eccc
Confidence 67778888886642 2 14578888876432 2212222 23 4478888888766433322222 0111
Q ss_pred CCCeEEeeceEEEeeccCCccccccccCCCceeEeeeeEEEEEEeee------ecccceeEEEEEccCCcEEEEEEEee
Q 004084 445 TGGVETIENCVCLHEEDHGMLWKHQDWRTGFAEVRRSRRLTVSFICT------VANYEYGFYWHFYQDGKIEAEVKLTG 517 (775)
Q Consensus 445 ~G~p~~~~naICihE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T------VgNYDYif~w~F~qDGtIe~ev~aTG 517 (775)
+. ..-|||=-..|.-+|. |. ........++++..+. -+|++--..|.+..++.++++..|++
T Consensus 91 N~------~~n~lHGg~~G~~~~~--W~---v~~~~~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~~ 158 (342)
T PRK11055 91 NQ------GGNQLHGGPEGFDKRR--WQ---IVNQNDRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRATV 158 (342)
T ss_pred CC------CCcccCCCCcccCCcE--EE---EEEccCCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEEc
Confidence 10 1235664444432222 21 1111123455665554 35777778888887788888888874
No 10
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=15.76 E-value=1.3e+03 Score=25.30 Aligned_cols=128 Identities=21% Similarity=0.326 Sum_probs=68.3
Q ss_pred EEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCC--CccCCCCCCCCCCCCCCe
Q 004084 357 FRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDG--LGKNAHSLKKGCDCLGYI 434 (775)
Q Consensus 357 F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~VpYgdp~~p~~~k~afD~GeyG--~G~~a~~L~~GcDCpg~i 434 (775)
+++.+. ..|-.|..++..+++ |. ..|++..|.++.. |. + +...+| +|+.+|.+.-|.=-
T Consensus 10 ~~~~i~-~~GA~l~~l~~~~~~-g~--------~~~~v~~~~~~~~-~~-~---~~~~~g~~lgp~anRi~~g~~~---- 70 (326)
T cd09019 10 LRVSIL-NYGATIQSLKVPDKN-GK--------LRDVVLGFDDLED-YL-K---NSPYFGATVGRVANRIANGRFT---- 70 (326)
T ss_pred cEEEEE-CcCcEEEEEEEECCC-CC--------EeeeEECCCCHHH-Hh-h---CCCccCCcccCcCCeecCCEEE----
Confidence 344444 588899999987642 22 3578888854332 21 1 113355 68888888755211
Q ss_pred EEeeeeeecCCCCeEEeec---eEEEeeccCCccccccccCCCceeEeeeeEEEEEEeee------ecccceeEEEEEcc
Q 004084 435 KYFDAHFTNFTGGVETIEN---CVCLHEEDHGMLWKHQDWRTGFAEVRRSRRLTVSFICT------VANYEYGFYWHFYQ 505 (775)
Q Consensus 435 ~YlD~~~~~~~G~p~~~~n---aICihE~D~GilwkH~d~r~g~~~v~r~r~LVvr~I~T------VgNYDYif~w~F~q 505 (775)
+| |+.+.++. .-+||=-..|..++ .|.- .......++++...+ -++++.-..|.+..
T Consensus 71 --~~-------G~~y~l~~Ne~~~~LHGg~~G~~~~--~w~~---~~~~~~~v~l~~~~~~~~~gyP~~~~~~v~y~L~~ 136 (326)
T cd09019 71 --LD-------GKTYQLEANEGPNHLHGGPKGFDKR--VWDV---EEVEENSVTFSLVSPDGEEGFPGNLTVTVTYTLTD 136 (326)
T ss_pred --EC-------CEEEEccCCCCCcccCCCCccccCc--EEeE---EeccCCEEEEEEECCcccCCCCeEEEEEEEEEECC
Confidence 22 22222211 23555444454444 3321 111133456666554 23445566666665
Q ss_pred CCcEEEEEEEee
Q 004084 506 DGKIEAEVKLTG 517 (775)
Q Consensus 506 DGtIe~ev~aTG 517 (775)
+++++++++++.
T Consensus 137 ~~~L~i~~~~~~ 148 (326)
T cd09019 137 DNELTIEYEATT 148 (326)
T ss_pred CCEEEEEEEEEe
Confidence 678888888875
Done!