Query 004084
Match_columns 775
No_of_seqs 176 out of 712
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sxx_A Peroxisomal primary ami 100.0 8E-190 3E-194 1620.5 66.7 634 77-756 21-669 (692)
2 3loy_A Copper amine oxidase; T 100.0 4E-187 2E-191 1589.6 67.8 621 78-748 1-633 (633)
3 1w6g_A Phenylethylamine oxidas 100.0 1E-184 4E-189 1575.6 65.4 620 77-750 6-629 (646)
4 1ksi_A Copper amine oxidase; P 100.0 2E-181 6E-186 1551.9 68.8 624 78-749 2-636 (642)
5 1spu_A Copper amine oxidase; o 100.0 7E-177 2E-181 1535.3 65.4 619 77-748 92-726 (727)
6 1w7c_A Lysyl oxidase; AMNE oxi 100.0 2E-159 8E-164 1380.4 58.7 609 75-747 15-692 (747)
7 1tu5_A Copper amine oxidase, l 100.0 7E-159 2E-163 1378.2 56.3 608 77-747 39-705 (746)
8 3hi7_A Amiloride-sensitive ami 100.0 2E-152 7E-157 1318.0 49.8 622 79-748 11-694 (731)
9 3pgb_A Putative uncharacterize 100.0 5E-151 2E-155 1308.6 53.8 627 75-748 62-737 (797)
10 1kmt_A RHO GDP-dissociation in 8.9 4.9E+02 0.017 24.6 5.8 65 330-409 34-98 (141)
No 1
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=8.1e-190 Score=1620.54 Aligned_cols=634 Identities=35% Similarity=0.612 Sum_probs=590.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004084 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (775)
Q Consensus 77 ~~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (775)
..|||||||++||++|++|||+++.+ +.++|++|+|.||+|++|+. | + +... ++|+|
T Consensus 21 ~~HPLDpLs~~Ei~~a~~iv~~~~~~----~~~~F~~i~L~EP~K~~v~~---~---------~--~~~~-----~~p~R 77 (692)
T 3sxx_A 21 PAHPLDPLSTAEIKAATNTVKSYFAG----KKISFNTVTLREPARKAYIQ---W---------K--EQGG-----PLPPR 77 (692)
T ss_dssp CSSTTSCCCHHHHHHHHHHHHHHTTT----SCEEEEEEEEECCCHHHHHH---H---------H--HSCC-----CCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCC----CCcEEEEEECCCCCHHHHHH---H---------H--hcCC-----CCCCe
Confidence 58999999999999999999987653 57999999999999999983 2 1 1111 36789
Q ss_pred eEEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCC-
Q 004084 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIED- 235 (775)
Q Consensus 157 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~~~~~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~- 235 (775)
+|+|++++..++.++|++|||+ .++|++|+.++++||+|+.|||.+||++|++||+|+++|+||||++
T Consensus 78 ~a~v~~~~~~~~~~~e~vVdl~-----------~~~v~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~~ 146 (692)
T 3sxx_A 78 LAYYVILEAGKPGVKEGLVDLA-----------SLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPAN 146 (692)
T ss_dssp EEEEEEEETTCSSEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCGG
T ss_pred EEEEEEEECCCCCEEEEEEECC-----------CCeEEEEEECCCCcCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCcc
Confidence 9999999988889999999998 6899999999999999999999999999999999999999999964
Q ss_pred -CCeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCcc-ccCCCCCCC
Q 004084 236 -MDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKL-VPLPPADPL 313 (775)
Q Consensus 236 -~~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~-~p~p~~~~~ 313 (775)
+++|+||||++||++.. +.+|||+|++||+|.. +++|+|+|||| |+++||++++||++|++... +|+|+.. .
T Consensus 147 ~~~~V~~dpw~~G~~~~~-~~~~Rl~~~~~y~r~~---~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~-~ 220 (692)
T 3sxx_A 147 EMHKVYCDPWTIGYDERW-GTGKRLQQALVYYRSD---EDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHK-H 220 (692)
T ss_dssp GGGGEEEEEEECCCCTTT-TTSSCEEEEEEEECSS---TTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSC-C
T ss_pred ccceEEEccccccccCCC-CCCceEEEEEEEEecC---CCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCC-C
Confidence 45699999999998754 4589999999999974 36899999999 99999999999999988765 4555433 4
Q ss_pred CCCCCCCcC--CCCCCC-CCCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeee
Q 004084 314 RNYTRGETR--GGVDRS-DVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSF 390 (775)
Q Consensus 314 ~~Y~~~~~~--~~~~r~-dlkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSl 390 (775)
.+|.++.+. ++. |+ |+|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|+ .|||+||+||
T Consensus 221 ~~Y~p~~~~~~~~~-r~~d~kP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~R~V~YrlSl 298 (692)
T 3sxx_A 221 ANFYPKHMIEKVGA-MRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGN-VRPIFHRISL 298 (692)
T ss_dssp CCCSHHHHHHHHSS-CCCCCCCCEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEE
T ss_pred CCCChHHccccCCC-CCCCCCCceecCCCCCcEEEcCCeEEecCcEEEEecCCCCceEEEEEEEcCCCc-ceeeeeeeeh
Confidence 799887653 344 88 999999999999999999999999999999999999999999999998765 6999999999
Q ss_pred eeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCccccccc
Q 004084 391 VEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQD 470 (775)
Q Consensus 391 sEm~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d 470 (775)
|||+||||||++||+||+|||+||||||.+||+|++||||||+|+|||+++.+.+|+|++++|||||||+|+|+||||+|
T Consensus 299 ~Em~VPYgdp~~p~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~d~Gil~kHt~ 378 (692)
T 3sxx_A 299 SEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSD 378 (692)
T ss_dssp EEEEEEBCCCSTTGGGCEECHHHHTCTTTTBCCCTTTTTSCSSCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEC
T ss_pred heeEEecCCCCchhhhheeeeccccCCCccccccccCCCCCCCcEEeeeEEecCCCCEEEecceEEEeeccCCceEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--ceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCCCC-CCCccccccCCCcccccee
Q 004084 471 WRTG--FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGE-SRKYGTMIAPSLYAPVHQH 547 (775)
Q Consensus 471 ~r~g--~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~~~-~~~yGt~V~p~v~a~~HqH 547 (775)
||++ .++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+++++.+++ ..+|||+|+|+++|++|||
T Consensus 379 ~r~~~~~~~v~r~r~LVvr~i~TVgNYDYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~yGt~V~~~v~a~~HqH 458 (692)
T 3sxx_A 379 FRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQH 458 (692)
T ss_dssp GGGTTCSEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEECCTTCCCTTTEEEEETTEEEECEEE
T ss_pred ccCCCceeeEEeccEEEEEEeeeccceeEEEEEEEecCCeEEEEEEEEEEEEeeeeCCCcccCCCcceecCCccccceeE
Confidence 9998 899999999999999999999999999999999999999999999999998877 6899999999999999999
Q ss_pred eEEEEeecccCCCCCCcccEEEEEeeeecCC---CCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCC
Q 004084 548 FFIARMDMEVDCKPGEAFNQVVEVDVKVEKP---GGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRT 624 (775)
Q Consensus 548 ~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~ 624 (775)
+||||||||||| .+|+|++++++..+. ++.|||||+|+++++.++||++|++++++.++|+|+|+|++++|++
T Consensus 459 ~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~~~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~~ 534 (692)
T 3sxx_A 459 LFSLRIDPRIDG----DGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPY 534 (692)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEECSSCTTBTTBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCTT
T ss_pred EEEEEeccccCC----CCceEEEEEeEEccCCCCCCCCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCC
Confidence 999999999998 699999999998765 4689999999999999999999999999999999999999999998
Q ss_pred -CCceeEEEecCCCCCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCC-CCChhhhc-ccCCceecCCc
Q 004084 625 -GQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRI-GEGLPAWV-KQNRPLEESDI 701 (775)
Q Consensus 625 -G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~-~~gl~~~~-~~nesI~neDi 701 (775)
|+|+||||+|++++.+|++++|...+||+||+||||||||+|+|+||+|+|+||+++. .+||++|+ ++||+|+||||
T Consensus 535 sG~pvgYkL~p~~~~~ll~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~Di 614 (692)
T 3sxx_A 535 SGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDI 614 (692)
T ss_dssp TCSCCEEEEECCCCCCCCSCTTSHHHHHCGGGGSSEEEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBCE
T ss_pred CCccceEEEecCCCCcccCCCCchhhhhchhcccceEEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCce
Confidence 9999999999999989999999999999999999999999999999999999999762 37999999 89999999999
Q ss_pred EEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCcccCccccC
Q 004084 702 VLWYVFGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPSACELDAKDN 756 (775)
Q Consensus 702 V~W~t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~~~~~~~~~ 756 (775)
|||||||+||+||+|||||||++++||+|||+|||++||+||+|++.+..+.++.
T Consensus 615 V~W~t~G~~HiPr~ED~PvMP~~~~gf~LrP~nFFd~NPaldvp~~~~~~~~~v~ 669 (692)
T 3sxx_A 615 LFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAK 669 (692)
T ss_dssp EEEEEEEEEECCCGGGSSSCCCEEEEEEEEEESSSSSCTTTTSCCSEEECHHHHH
T ss_pred EEEEecCcccCCchhcCCCCcceEEEEEEECCCcCCCCCcccCCCcccccChhhh
Confidence 9999999999999999999999999999999999999999999999988887664
No 2
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=4.4e-187 Score=1589.56 Aligned_cols=621 Identities=33% Similarity=0.561 Sum_probs=572.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCce
Q 004084 78 SHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRR 157 (775)
Q Consensus 78 ~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 157 (775)
.|||||||++||++|++|||+++.+ .+.++|++|+|.||+|++|+.+ +..++.|. +.++|+|+
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~EP~K~~v~~~------------l~~~~~g~--~~~~p~R~ 63 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKG---PERPHFIQIDRLDPPKKDMIRY------------LEAERTGK--PLPHISRM 63 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCS---SSCEEEEEEEECCCCHHHHHHH------------HHHHHHTC--CCCCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC---CCCcEEEEEECCCCCHHHHHHH------------HhhhhcCC--CCCCCCcE
Confidence 4999999999999999999987653 3579999999999999999842 22233232 12467899
Q ss_pred EEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeCCC-CCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004084 158 ARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPD-IQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (775)
Q Consensus 158 A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~~~-~~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~~ 236 (775)
|+|+++. ++.++|++|||+ +++|++|+.+++ +||+|+.|||.+||++|++||+|+++|+||||+++
T Consensus 64 a~v~~~~--~~~~~e~vVdl~-----------~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~ 130 (633)
T 3loy_A 64 TYVYYYI--GLDFYKALVNVS-----------YGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPH 130 (633)
T ss_dssp EEEEEEE--TTEEEEEEEETT-----------TTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTT
T ss_pred EEEEEEe--CCCEEEEEEECC-----------CCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 9997776 678999999998 689999999997 89999999999999999999999999999999998
Q ss_pred CeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCc------ccc---C
Q 004084 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRK------LVP---L 307 (775)
Q Consensus 237 ~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~------~~p---~ 307 (775)
++|+||||++|+++ +.+|||+|||||+|.. +++++|+|||||| |+++||++++||++|++.. .++ .
T Consensus 131 ~~V~~dpw~~G~d~---~~~~Rl~q~~~y~r~~-~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~ 205 (633)
T 3loy_A 131 VRVVCDPWMNGTDS---KEDRMLIQCYMYLASA-AHPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAW 205 (633)
T ss_dssp EEEEEEEEECCCSS---CCCSCEEEEEEEEEET-TCTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCC
T ss_pred ceEEEeccccccCC---CCCcEEEEEEEEEecC-CCCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCC
Confidence 89999999999854 3589999999999963 2578999999998 8899999999999998741 111 2
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEE
Q 004084 308 PPADPLRNYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHR 387 (775)
Q Consensus 308 p~~~~~~~Y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~Yr 387 (775)
++ ....+|.++.+. + .|+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+ | |||+||
T Consensus 206 ~~-~~~~~Y~p~~~~-~-~r~d~kp~~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~Yr 277 (633)
T 3loy_A 206 DE-FPFVEYHPDLNG-E-TIVPLKPLIVQQPEGPSFNVDGHKISWQGWEFFVIPTVREGFAIYDIHFK----G-RSVVYR 277 (633)
T ss_dssp CC-CCCCCCSTTTSC-C-CCCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEE
T ss_pred CC-CCCCCcChhHcc-c-ccCCCCCcceeCCCCCCEEEcCCccccCCcEEEEecCCCcCcEEEeeEEC----C-EEEEEE
Confidence 22 224799987654 3 49999999999999999999999999999999999999999999999997 3 889999
Q ss_pred eeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCcccc
Q 004084 388 LSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWK 467 (775)
Q Consensus 388 lSlsEm~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gilwk 467 (775)
+|||||+||||||++||+||+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|+|++||
T Consensus 278 lSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~k 357 (633)
T 3loy_A 278 LSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQDGGLLYK 357 (633)
T ss_dssp EEEEEEEEEBCCCSTTGGGCEEEHHHHTCTTTTBCCSTTTTCSCSSEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEE
T ss_pred EEeeeEEEeCCCCCChhhhheeecccccCccccccCCccCCCCCCCcEEeeeEEecCCCCEEEecceEEEEeccCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCCCCCCCccccccCCCcccccee
Q 004084 468 HQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQH 547 (775)
Q Consensus 468 H~d~r~g~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~a~~HqH 547 (775)
|++||+|.++++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++++++..+|||+|+|+++|++|||
T Consensus 358 Ht~~r~~~~~v~r~r~LVvr~i~TVgNYdYif~w~F~~dG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH 437 (633)
T 3loy_A 358 HTNYRTNVPVIARRREFVVQTIATVANAEYMLNIIFDQAGEIRIHVRATGILSTMPLDKDVTVPWGTNVGPRVMAAYHQH 437 (633)
T ss_dssp EECTTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCCTTEEEEETTEEEECEEE
T ss_pred eccccCCceeEEEeeEEEEEEEeeccceeEEEEEEEecCCeEEEEEEEEEEEeeeecCCcccCCCcceecCCccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999987778899999999999999999
Q ss_pred eEEEEeecccCCCCCCcccEEEEEeeeecCCC-CCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCC-C
Q 004084 548 FFIARMDMEVDCKPGEAFNQVVEVDVKVEKPG-GSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRT-G 625 (775)
Q Consensus 548 ~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~-~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~-G 625 (775)
+||||||||||| .+|+|++.+++..+.+ ..||||++|+++++.+++| ++++++++++|+|+|+|++++|++ |
T Consensus 438 ~f~~RlD~dIdG----~~Nsv~~~d~~~~~~~~~~nP~g~~~~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G 511 (633)
T 3loy_A 438 MLSFRIDPAVDG----YENTVVFDDVIRMEKNTKLNPYNVGFVTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISK 511 (633)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEECCSSSSSSTTSCCEEEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTC
T ss_pred EEEEEecccccC----CCCEEEEEeeeecCCCCCCCCCCcceEEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCC
Confidence 999999999998 6999999998876654 3799999999999999886 789999999999999999999995 9
Q ss_pred CceeEEEecCCCCCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEE
Q 004084 626 QLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWY 705 (775)
Q Consensus 626 ~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~neDiV~W~ 705 (775)
+|+||||+|+.++++|+.|+|+.++||+||+||||||||+|+|+||+|+|+||+++ ++||++|+++||+|+||||||||
T Consensus 512 ~p~gYkl~p~~~~~ll~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~gl~~w~~~~e~i~n~DiV~W~ 590 (633)
T 3loy_A 512 KPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQT-DTGLGVWARRDENVRNDNPVVWA 590 (633)
T ss_dssp SEEEEEEECCCCCCCCSCSSSHHHHHCGGGGSSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHTTCCCCCTTBCEEEEE
T ss_pred ccceEEEccCCCCcccCCCCchhhhccchhhcceEEecCCCCccccCCCCccCCCC-CCChHHHhcCCCccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999975 67999999999999999999999
Q ss_pred eeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCc
Q 004084 706 VFGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPSA 748 (775)
Q Consensus 706 t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~ 748 (775)
|||+||+||+|||||||++++||+|||+||||+||+||||+|+
T Consensus 591 t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nP~ldvp~s~ 633 (633)
T 3loy_A 591 TLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALSVPQST 633 (633)
T ss_dssp EEEEEECCCGGGCSSEEEEEEEEEEEEESSSSSCGGGGSCCCC
T ss_pred ecCcccCCCcccCCCCccceeeEEEEcCCcCCCCccccCCCCC
Confidence 9999999999999999999999999999999999999999874
No 3
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=1.3e-184 Score=1575.64 Aligned_cols=620 Identities=38% Similarity=0.684 Sum_probs=580.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004084 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (775)
Q Consensus 77 ~~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (775)
..|||||||++||++|++||+++... ++.++|++|+|.||+|++ ++ ++|+|
T Consensus 6 ~~HPldpLs~~Ei~~a~~iv~~~~~~---~~~~~F~~i~L~eP~K~~---------------------g~-----~~P~R 56 (646)
T 1w6g_A 6 TASPFRLASAGEISEVQGILRTAGLL---GPEKRIAYLGVLDPARGA---------------------GS-----EAEDR 56 (646)
T ss_dssp -CCTTCCCCHHHHHHHHHHHHHTTCC---CTTEEEEEEEECCCCSCC---------------------SS-----SCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccC---CCCcEEEEEEccCCchhh---------------------CC-----CCCCe
Confidence 47999999999999999999997652 357999999999999964 22 25789
Q ss_pred eEEEEEEECCCCcEEEEEEeCCccccccccccccccEEE---eeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCC
Q 004084 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVS---SRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGI 233 (775)
Q Consensus 157 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~---~~~~~~~~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl 233 (775)
+|+|+++++.++.++|++|+|+ .++|++ ++.++++||+++.+|+.+++++|+++|.|+++|++|||
T Consensus 57 ~A~vv~~~~~~~~~~E~vV~L~-----------~~~v~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~gl 125 (646)
T 1w6g_A 57 RFRVFIHDVSGARPQEVTVSVT-----------NGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 125 (646)
T ss_dssp EEEEEEEETTSCCCEEEEEETT-----------TTEEEEEEECCHHHHCBCCCCHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred EEEEEEEECCCCcEEEEEEECC-----------CCeEEecccceeCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCC
Confidence 9999999988888999999998 578998 89999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCC
Q 004084 234 EDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPL 313 (775)
Q Consensus 234 ~~~~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~p~p~~~~~ 313 (775)
+++++|+| ||++||+++..+.++|++|++||+|.. +++|+|+|||+||+++||++++||++|++.+.++.|. ..
T Consensus 126 ~~~~~v~~-pw~~g~~~~~~~~~~Rl~~~~~~~r~~---~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~--~~ 199 (646)
T 1w6g_A 126 DVSKVRVA-PLSAGVFEYAEERGRRILRGLAFVQDF---PEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA--EH 199 (646)
T ss_dssp CGGGEEEE-EEECCCCSCGGGTTSCEEEEEEEECSS---TTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC--SC
T ss_pred CCCCeeEE-eecccccCCccCCCcEEEEEEEEEecC---CCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC--CC
Confidence 98888999 999998776665689999999999874 4589999999999999999999999999876556664 24
Q ss_pred CCCCCCCcCCCCCCCCCCCccccCCCCCeEEEe-ceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeee
Q 004084 314 RNYTRGETRGGVDRSDVKPLQIVQPEGPSFRVN-GYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVE 392 (775)
Q Consensus 314 ~~Y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~-G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsE 392 (775)
++|.++.++++. |+++|||+|+||||+||+|+ |++|+||||+||||||+||||+||||+|+|+|+ .||||||+||||
T Consensus 200 ~~y~~~~~~~~~-r~~lkP~~i~QPeGpsF~V~~G~~V~W~~W~F~vgfn~ReGlvL~dV~y~~~g~-~R~V~YrlSlsE 277 (646)
T 1w6g_A 200 GNYTDPELTGPL-RTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDR-LRPIINRASIAE 277 (646)
T ss_dssp CCTTCHHHHCSC-CCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEE
T ss_pred CccchhhcCCCc-CCCCCCceecCCCCCceEEeCCCEEEeCCCEEEEecCCCcceEEEEEEEcCCCC-ceEEEEEeeeeE
Confidence 699877654444 99999999999999999999 999999999999999999999999999998765 699999999999
Q ss_pred EEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCccccccccC
Q 004084 393 MVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWR 472 (775)
Q Consensus 393 m~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r 472 (775)
|+||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|+|+||||+|||
T Consensus 278 m~VPYgdp~p~~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~d~GilwkH~~~r 357 (646)
T 1w6g_A 278 MVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLW 357 (646)
T ss_dssp EEEEBCCCCTTTTTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTT
T ss_pred EEEeCCCCCchhhcceeeeccCcCCcccccccccCCCCCCCCEEEeEEEEcCCCCEEEcCCEEEEeeccCCcceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCCCCCCCccccccCCCccccceeeEEEE
Q 004084 473 TGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIAR 552 (775)
Q Consensus 473 ~g~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~a~~HqH~f~~R 552 (775)
+|.++++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++.+ +..+|||+|+|+++|++|||+|+||
T Consensus 358 ~~~~~v~r~r~LVvr~i~Tv~NYdYi~~w~F~~dG~Ie~ev~aTGil~t~~~~~-~~~~yGt~V~~~v~a~~HqH~f~~R 436 (646)
T 1w6g_A 358 SGINYTRRNRRMVISFFTTIGNADYGFYWYLYLDGTIEFEAKATGVVFTSAFPE-GGSDNISQLAPGLGAPFHQHIFSAR 436 (646)
T ss_dssp TCCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCT-TCCSSEEEEETTEEEECEEEEEEEE
T ss_pred CCceeeecccEEEEEEEeeccccceEEEEEEecCCeEEEEEEEEEEEeeeecCC-ccCCCcceecCCcccccceEEEEEe
Confidence 999999999999999999999999999999999999999999999999999986 5688999999999999999999999
Q ss_pred eecccCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCCceeEEE
Q 004084 553 MDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKL 632 (775)
Q Consensus 553 lD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl 632 (775)
||||||| .+|+|++++++..+.+..||+|++|+++++.+++|.||++++++.++|+|+|+|++++|++|+|+||||
T Consensus 437 lD~dIdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl 512 (646)
T 1w6g_A 437 LDMAIDG----FTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKL 512 (646)
T ss_dssp EEECTTS----SCBEEEEEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEE
T ss_pred ecccccC----CCCEEEEEeeEeccCCCCCCCCceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeEEE
Confidence 9999997 699999999998776678999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEeeccccC
Q 004084 633 VPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWYVFGITHV 712 (775)
Q Consensus 633 ~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~neDiV~W~t~G~~Hi 712 (775)
+|++++.+|+.|+|+..+||.|++||||||||+|+|+||+|+|+|||.+ ++||++|+++||+|+|+|||||||||+||+
T Consensus 513 ~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~nQs~~-~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~ 591 (646)
T 1w6g_A 513 HAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVWHTFGLTHF 591 (646)
T ss_dssp EECCCCCCCSCTTSHHHHHTGGGGSSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHHTTCCBCTTBCEEEEEEEEEEEC
T ss_pred ccCCcccccCCCCccccccccccccceEEeccCCCccccCCCCcccCCC-CCChhHHhhCCCCcccCceEEEEeCccccC
Confidence 9999999999999999999999999999999999999999999999976 579999999999999999999999999999
Q ss_pred CCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCccc
Q 004084 713 PRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPSACE 750 (775)
Q Consensus 713 Pr~ED~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~~~ 750 (775)
||+|||||||++++||+|||+|||++||+||+|++.|+
T Consensus 592 Pr~ED~PvMP~~~~~f~L~P~nFF~~nP~ldvp~~~~~ 629 (646)
T 1w6g_A 592 PRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQ 629 (646)
T ss_dssp CCGGGSSSEEEEEEEEEEEESSCSSSCTTTTCCCC---
T ss_pred CCccccCCCCCceEEEEEEecCcCCCCCCccCCCcccc
Confidence 99999999999999999999999999999999999775
No 4
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=1.9e-181 Score=1551.90 Aligned_cols=624 Identities=28% Similarity=0.506 Sum_probs=573.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCce
Q 004084 78 SHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRR 157 (775)
Q Consensus 78 ~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~ 157 (775)
.|||||||++||++|++||+++...+ ...++|++|+|.||+|++|+. | |. ..++ ++|+|+
T Consensus 2 ~HPldpLs~~Ei~~a~~iv~~~~~~~--~~~~~F~~i~L~EP~K~~v~~---~---------l~-~~~~-----~~P~R~ 61 (642)
T 1ksi_A 2 QHPLDPLTKEEFLAVQTIVQNKYPIS--NNRLAFHYIGLDDPEKDHVLR---Y---------ET-HPTL-----VSIPRK 61 (642)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHHSCTT--TCCEEEEEEEECCCCHHHHHH---H---------HH-CGGG-----CCCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCC--CCceEEEEEECCCCCHHHHHH---H---------Hh-hcCC-----CCCCcE
Confidence 69999999999999999999987532 246899999999999999983 2 11 2232 368999
Q ss_pred EEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeCCC-CCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004084 158 ARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPD-IQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (775)
Q Consensus 158 A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~~~-~~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~~ 236 (775)
|+|+++.+ +.++|++|+|+ .++|++++..+. +||+++.+|+.+++++++++|.|+++|++|||+ +
T Consensus 62 A~vv~~~~--~~~~E~vV~L~-----------~~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~-~ 127 (642)
T 1ksi_A 62 IFVVAIIN--SQTHEILINLR-----------IRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLN-L 127 (642)
T ss_dssp EEEEEEET--TEEEEEEEETT-----------TTEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCC-G
T ss_pred EEEEEEeC--CeEEEEEEECC-----------CCcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCC-c
Confidence 99999854 68899999998 578888655553 599999999999999999999999999999996 6
Q ss_pred CeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCCCC
Q 004084 237 DLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLRNY 316 (775)
Q Consensus 237 ~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~p~p~~~~~~~Y 316 (775)
..|+||||++|+++..+ ++|++|++||++. .++|+|+||||||+++||++++||++|++.+.+++|+.+ ..+|
T Consensus 128 ~~v~~~pw~~g~~~~~~--~~Rl~~~~~~~~~----~~~n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~-~~~y 200 (642)
T 1ksi_A 128 SEIVCSSFTMGWFGEEK--NVRTVRLDCFMKE----STVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAE-NTEY 200 (642)
T ss_dssp GGEEEEEECCCCCSCSC--CCCEEEEEEEECS----SCSCGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCT-TCCC
T ss_pred cceEEecccccCCCCCC--CcEEEEEEEEEec----CCCcccccccCceEEEEECCCCEEEEEEccCCccCCCCC-CCCc
Confidence 78999999999987653 6999999999995 368999999999999999999999999988777777654 2479
Q ss_pred CCCCcCCCCCCCCCCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCC-eeeEEEEeeeeeEEe
Q 004084 317 TRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRG-RRSVAHRLSFVEMVV 395 (775)
Q Consensus 317 ~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g-~R~I~YrlSlsEm~V 395 (775)
.+..+.++. |+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|.++| +|+||||+|||||+|
T Consensus 201 ~~~~~~~~~-r~~lkP~~i~QPeG~sF~V~G~~V~W~~W~f~vgf~~reGlvL~dv~y~d~~~g~~r~V~YrlSl~Em~V 279 (642)
T 1ksi_A 201 QVSKQSPPF-GPKQHSLTSHQPQGPGFQINGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFV 279 (642)
T ss_dssp CSTTCCSCC-CCCCCCBEEECTTCCSCEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred cccccCCCC-CCCCCCceecCCCCCCEEEeCcEEeeCCceEEEecCCCcccEEEEEEEecCCCCCceEEEEEeeeeeEEE
Confidence 887665555 999999999999999999999999999999999999999999999999985533 589999999999999
Q ss_pred ecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCccccccccCCC-
Q 004084 396 PYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTG- 474 (775)
Q Consensus 396 pYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g- 474 (775)
|||||++||++|+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|.|+||||+|||++
T Consensus 280 PYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~gilwkH~~~r~~~ 359 (642)
T 1ksi_A 280 PYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGNIMWRHTENGIPN 359 (642)
T ss_dssp EBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBCTTCEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEECCSTT
T ss_pred eCCCCCcccccceeeeccccCccccccccccCCCCCCCCEEeeeEEecCCCCEEEcCCEEEEEeccCCcceeeccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --ceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecCCC-----CCCCccccccCCCcccccee
Q 004084 475 --FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQPG-----ESRKYGTMIAPSLYAPVHQH 547 (775)
Q Consensus 475 --~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~~~-----~~~~yGt~V~p~v~a~~HqH 547 (775)
.++++|+|+||||+|+|||||||||||+|||||+||+||+|||||+|.++... +..+|||+|+|+++|++|||
T Consensus 360 ~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH 439 (642)
T 1ksi_A 360 ESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDH 439 (642)
T ss_dssp CCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCEEECSCCSGGGCCSCCSEEEEETTEEEECEEE
T ss_pred ceeeeeeeccEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEecccccccccccccCCCcceecCCcccccceE
Confidence 47899999999999999999999999999999999999999999999887652 34789999999999999999
Q ss_pred eEEEEeecccCCCCCCcccEEEEEeeeecCCC-CCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCC
Q 004084 548 FFIARMDMEVDCKPGEAFNQVVEVDVKVEKPG-GSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQ 626 (775)
Q Consensus 548 ~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~-~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~ 626 (775)
+||||||||||| .+|+|++++++..+.+ +.||++++|+++++++++|+||++++++. +|+|+|+|++++|++|+
T Consensus 440 ~f~~RlD~dIdG----~~Nsv~~~~~~~~~~~~~~np~~~~~~~~~t~~~tE~ea~~~~~~~-~r~~~i~N~~~~N~~G~ 514 (642)
T 1ksi_A 440 FYIYYLDFDIDG----THNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLA-PAELVVVNPNIKTAVGN 514 (642)
T ss_dssp EEEEEEEECTTS----SCBEEEEEEEEEEECCSSCSSCSEEEEEEEEECCBGGGGCBCTTSS-CEEEEEEEEEEECTTSC
T ss_pred EEEEeeccCCCC----CCCeEEEEeeEecCCCCCCCCCcceEEEEEEEccchhhhhhccCCC-ceEEEEEcCCCcCCCCC
Confidence 999999999997 6999999998865543 57999999999999999999999999999 99999999999999999
Q ss_pred ceeEEEecCCCCCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceecCCcEEEEe
Q 004084 627 LTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESDIVLWYV 706 (775)
Q Consensus 627 p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~neDiV~W~t 706 (775)
|+||||+|++++.+|+.++|+..+||+|++||||||||+|+|+||+|+|+||+++ ++|+.+|+++||+|+|+|||||||
T Consensus 515 p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~a~g~y~~qs~~-~~gl~~~~~~~~~i~~~DiV~W~t 593 (642)
T 1ksi_A 515 EVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRG-DDTLAVWTKQNREIVNKDIVMWHV 593 (642)
T ss_dssp EEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCTTCCCTTCSCCBTCCS-SSSHHHHGGGCCBCSSBCEEEEEE
T ss_pred eeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCCCccCCCCCCccCCCC-CCChhhhhhCCCccccCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999999975 579999999999999999999999
Q ss_pred eccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCcc
Q 004084 707 FGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPSAC 749 (775)
Q Consensus 707 ~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~~ 749 (775)
||+||+||+|||||||++++||+|||+|||++||+||+|++..
T Consensus 594 ~G~~H~Pr~ED~PvMp~~~~~f~L~P~nFF~~nP~ldvp~~~~ 636 (642)
T 1ksi_A 594 VGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRD 636 (642)
T ss_dssp EEEEECCCGGGSSSCCCEEEECEEEESSCSSSCTTTTCCCCCB
T ss_pred cccccCCChhhCCCCccceEEEEEEeCCCCCCCCCccCCCCcc
Confidence 9999999999999999999999999999999999999999854
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=6.7e-177 Score=1535.30 Aligned_cols=619 Identities=29% Similarity=0.554 Sum_probs=565.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCc
Q 004084 77 TSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPR 156 (775)
Q Consensus 77 ~~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R 156 (775)
..|||||||++||++|+++|+++.. ..+.++|.+|+|.||+|++|+. | + ..+++ ++|+|
T Consensus 92 ~~HPLdpLs~~Ei~~a~~il~~~~~---~~~~~~F~~i~L~eP~K~~vl~---~---------~--~~~~~----~~p~R 150 (727)
T 1spu_A 92 RPHPLNALTADEIKQAVEIVKASAD---FKPNTRFTEISLLPPDKEAVWA---F---------A--LENKP----VDQPR 150 (727)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHTSTT---CCTTCEEEEEEEECCCHHHHHH---H---------H--HHCCC----CCCCC
T ss_pred cCCCCCcCCHHHHHHHHHHHHhccc---CCCCcEEEEEEecCCCHHHHHh---H---------H--hcCCC----CCCCe
Confidence 4799999999999999999998643 2457999999999999999983 2 1 22332 25789
Q ss_pred eEEEEEEECCCCcEEEEEEeCCccccccccccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcChhHHHHHHHcCCCCC
Q 004084 157 RARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAFPPFKEAMKKRGIEDM 236 (775)
Q Consensus 157 ~A~vv~~~~~~~~~~e~iV~L~~~~~~~~~~~~~~~v~~~~~~~~~~pp~~~~E~~~~e~~~~~~p~~~~a~~~rgl~~~ 236 (775)
+|+|+++++ +.++|++|+|+ .++|++|+.++++||+++.+|+.+++++|+++|.|+++|++|||+++
T Consensus 151 ~A~vv~~~~--~~~~e~vV~l~-----------~~~v~~~~~~~~~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~~ 217 (727)
T 1spu_A 151 KADVIMLDG--KHIIEAVVDLQ-----------NNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDA 217 (727)
T ss_dssp EEEEEEEET--TEEEEEEEETT-----------TTEEEEEEEETTCCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCSCT
T ss_pred EEEEEEEeC--CeEEEEEEeCC-----------CCceEEEEeCCCcCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCCcc
Confidence 999999864 67899999997 68899999999999999999999999999999999999999999999
Q ss_pred CeEEEeeccccccCCCC--CCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCcEEEEEecCccccCCCCCCCC
Q 004084 237 DLVMVDAWCVGYYSDAD--APSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPADPLR 314 (775)
Q Consensus 237 ~~V~~dpw~~G~~~~~~--~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~p~p~~~~~~ 314 (775)
.+|+||||++|+++..+ ..++|++|++||+.. +++|+|+||||||+++||++++||++|++...+++|... .
T Consensus 218 ~~v~~dpw~~g~~~~~~~~~~~~R~~~~~~~~~~----~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~~--~ 291 (727)
T 1spu_A 218 KKVITTPLTVGYFDGKDGLKQDARLLKVISYLDV----GDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTA--R 291 (727)
T ss_dssp TSEEEEEECCCCCTTTTCCCSSSCEEEEEEEECC----SSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCSC--C
T ss_pred ceEEEccccccccCCCCCCCCCcEEEEEEEEEEC----CCCCccccCccceEEEEecccCEEEEEEcCCccccCCCC--C
Confidence 99999999999877444 257999999999843 358999999999999999999999999988766766543 5
Q ss_pred CCCCCCcCCCCCCCCCCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEE
Q 004084 315 NYTRGETRGGVDRSDVKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMV 394 (775)
Q Consensus 315 ~Y~~~~~~~~~~r~dlkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~ 394 (775)
+|.+.. + .|+++|||+|+||||+||+|+|++|+||||+||||||+||||+||||+|+|+|+ .||||||+|||||+
T Consensus 292 ~y~~~~---~-~r~~lkP~~i~QPeG~sF~v~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~~g~-~r~V~YrlSl~Em~ 366 (727)
T 1spu_A 292 PFDGRD---R-VAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGT-KRKVMYEGSLGGMI 366 (727)
T ss_dssp CSSSTT---E-ECCCCCCCEEECTTCCSEEEETTEEEETTEEEEEEEETTTEEEEEEEEEEETTE-EEEEEEEEEEEEEE
T ss_pred Cccccc---c-ccCCCCCccccCCCCCCEEECCCccccCCcEEEEecCCCCceEEEEEEEcCCCc-eEEEEEEeEeeEEE
Confidence 787754 2 389999999999999999999999999999999999999999999999998765 69999999999999
Q ss_pred eecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCccccccccCCC
Q 004084 395 VPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGMLWKHQDWRTG 474 (775)
Q Consensus 395 VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~GilwkH~d~r~g 474 (775)
||||||++||+||+|||+||||+|.+||+|++||||||+|+|||+++++.+|+|++++|||||||+|+|+||||+||++
T Consensus 367 VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naiCi~E~d~G~l~kH~~~~~- 445 (727)
T 1spu_A 367 VPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQ- 445 (727)
T ss_dssp EEBCCCSTTTTTCEECHHHHHCTTTTBCCCCTTTTSCTTCEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEECCTTS-
T ss_pred EeCCCCCCchhcceeeeccCcCCcccccccccCCCCCCCCEEeeeEEEcCCCCEEEeCCeEEEecccCCcceeeeccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEEEEEeeEEEeeecC-----C-C--CCCCccccccCCCccccce
Q 004084 475 FAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGVLSLGALQ-----P-G--ESRKYGTMIAPSLYAPVHQ 546 (775)
Q Consensus 475 ~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~ev~aTGil~t~~~~-----~-~--~~~~yGt~V~p~v~a~~Hq 546 (775)
.+.++|+|+||||+|+|||||||||+|+|||||+||+||+|||||+++++. + + +..+|||+|+|+++|++||
T Consensus 446 ~~~~~r~r~LVv~~i~Tv~NYdYi~~w~F~~dG~I~~ev~aTGil~~~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~Hq 525 (727)
T 1spu_A 446 PNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQ 525 (727)
T ss_dssp CCEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCEEECSCSSTTSTTHHHHTTTEEEEETTEEEECEE
T ss_pred CceeeeceEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCcceecCCcccccce
Confidence 467789999999999999999999999999999999999999999987532 1 1 2368999999999999999
Q ss_pred eeEEEEeecccCCCCCCcccEEEEEeeeecCCCCCCCCCcceEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCC
Q 004084 547 HFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNNAFYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQ 626 (775)
Q Consensus 547 H~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~~~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~ 626 (775)
|+||||||||||| .+|+|++.+++..+.+..||++++|+++++.+++|.+|++++++.++|+ |+|++++|++|+
T Consensus 526 H~f~~RlD~dVdG----~~Nsv~~~d~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~--i~n~~~~N~~G~ 599 (727)
T 1spu_A 526 HIYNFRLDLDVDG----ENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGN 599 (727)
T ss_dssp EEEEEEEEECTTS----SEEEEEEEEEEEEECCSCSSCSEEEEEEEEEECBHHHHSBCCCTTSEEE--EEEEEEECTTSC
T ss_pred eEEEEeecccccC----CCCeEEEEeeEEccCCCCCCCCceeEEEEEEccchhhhhhccCCCCcEE--EeCCCCcCCCCC
Confidence 9999999999997 6999999999877766689999999999999999999999999999887 899999999999
Q ss_pred ceeEEEecC--CC----CCCCCCCChhhhhhhhccccceEEeeccCCccCCCCCCCCCCCCCCCChhhhcccCCceecCC
Q 004084 627 LTGYKLVPG--SN----CLPLAGPDATVFRRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIGEGLPAWVKQNRPLEESD 700 (775)
Q Consensus 627 p~gYkl~p~--~~----~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~~gl~~~~~~nesI~neD 700 (775)
|+||||+|. .+ +.+++.++|+..+||+|++||||||||+|+|+||+|+|+||+++ +.||++|+++||+|+|+|
T Consensus 600 p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~a~g~y~~q~~~-~~gl~~~~~~~e~i~~~D 678 (727)
T 1spu_A 600 PVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTD 678 (727)
T ss_dssp EEEEEEEEEEEESSCBCCSCSSCTTCHHHHHCGGGGCSEEEEECCTTCCCTTCSCCTTCSS-CCSHHHHHTTCCBCSSEE
T ss_pred eeeEEEecCCCCccccccccccCCcchhhhhhcccccceEEeccCCcccCCCCCCccCCCC-CCCHHHHhhCCCccccCC
Confidence 999999993 32 45789999999999999999999999999999999999999975 569999999999999999
Q ss_pred cEEEEeeccccCCCCCCCCCcccceeeEEEEeCCCCCCCCCCCCCCCc
Q 004084 701 IVLWYVFGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPSA 748 (775)
Q Consensus 701 iV~W~t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nPalDvP~s~ 748 (775)
||||||||+||+||+|||||||++++||+|||+||||+||+||+|++.
T Consensus 679 iV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nPaldvp~~~ 726 (727)
T 1spu_A 679 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALKKD 726 (727)
T ss_dssp EEEEEEEEEEECCCGGGSSSEEEEEEEEEEEEESSSSSCTTSCCBC--
T ss_pred cEEEEecccccCCChhhCCCCcccEEEEEEEeCCCCCCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999874
No 6
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=2.3e-159 Score=1380.42 Aligned_cols=609 Identities=19% Similarity=0.316 Sum_probs=533.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCC-CCce---EEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCC
Q 004084 75 PQTSHPLDPLSPAEISVAVATVRAAGPTPEV-RDSM---RFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIP 150 (775)
Q Consensus 75 ~~~~HPLDPLt~~EI~~a~~ivr~~~~~~~~-~~~~---~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p 150 (775)
....|||||||++||+++.++|+++...... ...+ .|..|+|.||+|.+|+. +++++++
T Consensus 15 ~~~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~--------------~Ld~~g~--- 77 (747)
T 1w7c_A 15 APKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALT--------------YLDEDGD--- 77 (747)
T ss_dssp CSSCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHH--------------HHHSCCC---
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHh--------------HhhCCCC---
Confidence 3347999999999999999999987212111 1234 68899999999999983 2455553
Q ss_pred CCCCCceEEEEEEECCC--CcEEEEEEe-CCccccccccccccccEEEeeeCC---C----CCC----CCCHHHHHHHHH
Q 004084 151 SKLPPRRARLVVYNKKS--NETSIWIVE-LSQVHAVTRGGHHRGKVVSSRVVP---D----IQP----PMDAEEYAQCEA 216 (775)
Q Consensus 151 ~~~P~R~A~vv~~~~~~--~~~~e~iV~-L~~~~~~~~~~~~~~~v~~~~~~~---~----~~p----p~~~~E~~~~e~ 216 (775)
+|+|+|+|+++++++ +.++|++|+ |+ .+++++++.++ + .+| +++.+|+.++++
T Consensus 78 --~P~R~A~vv~~~~~~~~~~~~E~vV~PL~-----------~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~~e~ 144 (747)
T 1w7c_A 78 --LPPRNARTVVYFGEGEEGYFEELKVGPLP-----------VSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSS 144 (747)
T ss_dssp --CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------CCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHHHHH
T ss_pred --CCCceEEEEEEeCCCCCCceEEEEEcCCC-----------CCcEEEEEeccccCCCCcccCCcccCCCCHHHHHHHHH
Confidence 689999999998753 778999998 98 46777887874 2 357 999999999999
Q ss_pred HHHcChhHHHHH------HHcC-CCCCCeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEE
Q 004084 217 AVKAFPPFKEAM------KKRG-IEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLV 289 (775)
Q Consensus 217 ~~~~~p~~~~a~------~~rg-l~~~~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~v 289 (775)
+|+ .+++++ +++| ++.++ +++|++|..-+..+.++|++|++|| |.. .+ +|+|+||| ||+++|
T Consensus 145 ~~~---~~~~~~~~~~l~~~~g~~~~~~---l~~w~~~~~~~~~~~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~~~v 213 (747)
T 1w7c_A 145 FLN---KNLNTTIMRDVLEGLIGVPYED---MGCHSAAPQLHDPATGATVDYGTCN-INT--EN-DAENLVPT-GFFFKF 213 (747)
T ss_dssp HHH---HHHTSHHHHHHHHHHHSSCGGG---EEEEECSSCEECTTTCCEEEEEEEE-ECC--SS-SCGGGCEE-EEEEEE
T ss_pred HHH---HHHHHHhhccchhhcCCcccce---eeeecccCCcCCCCCCceEEEEEEE-Eec--CC-CCccccce-eeEEEE
Confidence 999 666666 7788 76654 8899987541012247999999996 432 13 79999999 799999
Q ss_pred ecc-----CcEEEEEecCc-----------------cc---cCCCCCCCCCC---CCCCcC-CC-CCCCCCCCccccCCC
Q 004084 290 DMQ-----NMVVIEFEDRK-----------------LV---PLPPADPLRNY---TRGETR-GG-VDRSDVKPLQIVQPE 339 (775)
Q Consensus 290 D~~-----~~~vv~i~d~~-----------------~~---p~p~~~~~~~Y---~~~~~~-~~-~~r~dlkPl~i~QPe 339 (775)
|++ ++||++|++.+ .+ ++| ..+| .+...+ ++ ..|+++|||+|+|||
T Consensus 214 D~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~~~~g~v~~~~~p----~~~~~~~~~~~~~~g~~~~r~~lkp~~i~QPe 289 (747)
T 1w7c_A 214 DMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKID----VDNLDWTVIQRNDSAPVRHLDDRKSPRLVEPE 289 (747)
T ss_dssp ECCSSCGGGCEEEEEEETTEEESSHHHHHHHHHSTTCCCCCCCC----TTCCGGGCCSCCTTSCCCTTTTSCCCCCCCTT
T ss_pred eCCCCCcccCEEEEEEECCcccCchhhhhhhhcccCcccccccC----CCCCcccchhhcccCCCCcccCCCCCcccCCC
Confidence 997 57999985442 11 222 1233 232322 21 248999999999999
Q ss_pred CCeEEEeceE--EeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCCC
Q 004084 340 GPSFRVNGYF--VQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGL 417 (775)
Q Consensus 340 G~sF~V~G~~--V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~VpYgdp~~p~~~k~afD~GeyG~ 417 (775)
|+||+|+|++ |+||||+||||||+||||+||||+|+ | |||+||+|||||+||||||+++|++++|||.| ||+
T Consensus 290 G~sF~v~g~~~yV~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~g-yG~ 363 (747)
T 1w7c_A 290 GRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFK----G-ERIVYELSLQELIAEYGSDDPFNQHTFYSDIS-YGV 363 (747)
T ss_dssp CCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSTTGGGCEEEHHH-HCS
T ss_pred CCCEEEeCCccceeccCCeEEEecCCCCceEEEeeeEC----C-EEEEEEEEeeeEEeccCCCCchhheeeeeccc-cCc
Confidence 9999999999 99999999999999999999999997 4 88999999999999999999999999999999 999
Q ss_pred ccCCCCCCCCCCCCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCc-cccccccCCCceeEeeeeEEEEEEeeeecccc
Q 004084 418 GKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQDWRTGFAEVRRSRRLTVSFICTVANYE 496 (775)
Q Consensus 418 G~~a~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d~r~g~~~v~r~r~LVvr~I~TVgNYD 496 (775)
|. ||+|++||||||+|+|||++++ .+|+|++++|||||||+|+|+ ||||+|+ +.++++|+|+||||+|+||||||
T Consensus 364 G~-a~~L~~GcDCpg~i~Y~D~~~~-~~G~p~~~~naiCihE~d~G~pl~kH~~~--~~~~v~r~r~LVvr~i~TVgNYd 439 (747)
T 1w7c_A 364 GN-RFSLVPGYDCPSTAGYFTTDTF-EYDEFYNRTLSYCVFENQEDYSLLRHTGA--SYSAITQNPTLNVRFISTIGNAD 439 (747)
T ss_dssp SS-SCCCCBTTTBCTTCEEEEEEEE-ETTEEEEEEEEEEEEEEECSSCSEEEEET--TEEEEECCEEEEEEEEECCCC-C
T ss_pred cc-ccccccCCCCCCCCEEeeeEEe-cCCCeEEcCceEEEEEEeCCeeeEEeccC--CcceeeeCceEEEEEEEeccccc
Confidence 99 9999999999999999999999 999999999999999999998 9999999 78999999999999999999999
Q ss_pred eeEEEEEccCCcEEEEEEEeeEEEeeecCCCCCCCccccccCCCccccceeeEEEEeecccCCCCCCcccEEEEEeeeec
Q 004084 497 YGFYWHFYQDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVE 576 (775)
Q Consensus 497 Yif~w~F~qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~ 576 (775)
|||+|+|||||+||++|+|||||++.++.+++..+|||+|+|+++|++|||+|+||||||||| .+|+|++++++..
T Consensus 440 Yif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~~~~ 515 (747)
T 1w7c_A 440 YNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGG----TKNRASQYVMKDV 515 (747)
T ss_dssp EEEEEEECTTSCEEEEEEECBCCCCEECCTTTCGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEEEEE
T ss_pred eEEEEEEecCCeEEEEEEeeEEEeccccCCCCcCCCcceecCCcccCccceEEEEEeccccCC----CCCEEEEEeeEEc
Confidence 999999999999999999999999999988776899999999999999999999999999997 6999999999876
Q ss_pred CCCCCCCCCc-----ceEEEEEEeehhhhhhhhcC-CCCCeEEEEEeCCCcCCCCCceeEEEecCCC-CCCCCCCChhhh
Q 004084 577 KPGGSNVHNN-----AFYAEETLLKSEMQAMRDCN-PLTARHWIVRNTRTVNRTGQLTGYKLVPGSN-CLPLAGPDATVF 649 (775)
Q Consensus 577 ~~~~~np~~~-----~~~~~~t~l~tE~ea~~~~~-~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~-~~~l~~~~s~~~ 649 (775)
+. .||+++ +|+++++.+++|.+|+++++ ..++|+| |+|++++|++|+|+||||+|+++ +.+|+.++|...
T Consensus 516 ~~--~np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~~r~~-ivN~~~~N~~G~p~gYkl~p~~~~~~~l~~~~s~~~ 592 (747)
T 1w7c_A 516 DV--EYPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILL-IESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGP 592 (747)
T ss_dssp EE--ECTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEE-EEEEEEECTTSCEEEEEEEECTTCCCCSCSSCTTCS
T ss_pred cc--CCCCCcccccceeEEEEEEccchhhhhhcCCCCCCceEE-EeCCCccCCCCCcceEEEecCCCCcccccCCCchhh
Confidence 65 399999 89999999999999999999 5779999 99999999999999999999998 889999999999
Q ss_pred hhhhccccceEEeeccCCccCCCCCCCCCCCCCC--CChhhhcccCCceecCCcEEEEeeccccCCCCCCCCCc--ccce
Q 004084 650 RRAAFLKHNLWVTAYARDEMFPGGEFPNQNPRIG--EGLPAWVKQNRPLEESDIVLWYVFGITHVPRLEDWPVM--PVER 725 (775)
Q Consensus 650 ~ra~fa~~~lwVT~y~d~E~~asG~y~nq~~~~~--~gl~~~~~~nesI~neDiV~W~t~G~~HiPr~ED~PvM--P~~~ 725 (775)
+||+|++||||||||+|+|+||+|+| ||+...+ ++|++|+ +||+|+|+|||||||||+||+||+|||||| |+++
T Consensus 593 ~ra~fa~~~lwVT~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiVlW~t~G~~HiPr~ED~PvM~tP~~~ 670 (747)
T 1w7c_A 593 ETQNWARSNLFLTKHKDTELRSSTAL-NTNALYDPPVNFNAFL-DDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAH 670 (747)
T ss_dssp SSCGGGGSSEEEEECCTTCCCSCCTT-CTTCSSSCSCCGGGGC-SCCBCTTEEEEEEEEEEEEECCCGGGSSCBCSSSSE
T ss_pred hcchhccCcEEEecCCCCccCCCCCc-cccCCCCCCcchhhhh-CCCccccCceEEEEecccccCCChhhcCCcCCCcce
Confidence 99999999999999999999999999 7765432 5699999 999999999999999999999999999999 8899
Q ss_pred eeEEEEeCCCCCCCCCCCCCCC
Q 004084 726 IGFMLMPHGFFNCSPAVDVPPS 747 (775)
Q Consensus 726 ~~f~LrP~nFFd~nPalDvP~s 747 (775)
+||+|||+|||++||+||+|++
T Consensus 671 ~gf~LrP~nFF~~nP~ldvp~~ 692 (747)
T 1w7c_A 671 ASFMLTPFNYFDSENSRDTTQQ 692 (747)
T ss_dssp EEEEEEEESSSSSCTTTTCSSE
T ss_pred EEEEEEeCCcCCCCCCccCCCc
Confidence 9999999999999999999998
No 7
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=6.5e-159 Score=1378.24 Aligned_cols=608 Identities=23% Similarity=0.302 Sum_probs=509.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC---CCCC--C-CCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCC
Q 004084 77 TSHPLDPLSPAEISVAVATVRAAG---PTPE--V-RDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIP 150 (775)
Q Consensus 77 ~~HPLDPLt~~EI~~a~~ivr~~~---~~~~--~-~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p 150 (775)
..|||||||++||+++.++|+++. .... + ..+..|..|+|.||+|..|+. | ++++++
T Consensus 39 ~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn~i~~IeL~~P~K~~vL~---~-----------Ld~~~~--- 101 (746)
T 1tu5_A 39 QSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAALA---H-----------LDRGSP--- 101 (746)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSEEEEEEEEECCCHHHHHH---H-----------HHHCCC---
T ss_pred CCCcCCCCCHHHHHHHHHHHhccCccCccccccCCccccEEEEEECCCCCHHHhhh---h-----------hcCCCC---
Confidence 479999999999999999998764 1110 0 112456679999999999983 2 355553
Q ss_pred CCCCCceEEEEEEECCC--CcEEEEEEe-CCccccccccccccccEEEeeeC-----CCCCC----CCCHHHHHHHHHHH
Q 004084 151 SKLPPRRARLVVYNKKS--NETSIWIVE-LSQVHAVTRGGHHRGKVVSSRVV-----PDIQP----PMDAEEYAQCEAAV 218 (775)
Q Consensus 151 ~~~P~R~A~vv~~~~~~--~~~~e~iV~-L~~~~~~~~~~~~~~~v~~~~~~-----~~~~p----p~~~~E~~~~e~~~ 218 (775)
+|+|+|+|+++++++ ..++|++|+ |+ .+++ ++.+ .+.+| +++.+|+.+++++|
T Consensus 102 --~P~R~A~vv~~~~~~~~~~v~E~vV~PL~-----------~~~~--~~~~~~~~~~~~~p~~~r~i~~~E~~~~e~~~ 166 (746)
T 1tu5_A 102 --PPAREALAIVFFGGQPQPNVTELVVGPLP-----------QPSY--MRDVTVERHGGPLPYYRRPVLLREYLDIDQMI 166 (746)
T ss_dssp --CCCCEEEEEEEECSSSSCEEEEEEEESSS-----------SCCE--EEECHHHHHSSCEEGGGSCCCHHHHHHHHHHH
T ss_pred --CCCccEEEEEEeCCCCCCceEEEEecCCC-----------CCcE--EEEcccCCCCCcCCcccCCCCHHHHHHHHHHH
Confidence 689999999998843 778999998 98 3444 3444 23466 99999999999999
Q ss_pred HcChhHHHHHHHcCC---CCCCeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEecc---
Q 004084 219 KAFPPFKEAMKKRGI---EDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQ--- 292 (775)
Q Consensus 219 ~~~p~~~~a~~~rgl---~~~~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~--- 292 (775)
+++|.++++|+++|+ ++.. +++++|..|..+.. .++|++|++|| |.. .+ +|+|+||| ||+++||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~-v~l~~~~~~p~~~~--~g~R~~~~~~~-r~~--~~-~n~Y~~Pl-g~~~~vD~~~~D 238 (746)
T 1tu5_A 167 FNRELPQAAGVLHHCCSYKQGG-QKLLTMNSAPRGVQ--SGDRSTWFGIY-YNI--TK-GGPYLHPV-GLELLVDHKALD 238 (746)
T ss_dssp HHTTGGGGHHHHHHHHCTTTTC-CCEEEECCSSCSSS--TTCCEEEEEEE-ECC--SS-SCGGGSEE-EEEEEEECCSSS
T ss_pred HHCHHHHHHHHHhcCCCcccCC-EEEeCccccCCcCC--CCcEEEEEEEE-Eec--CC-CCccccce-eeEEEEeCCCCC
Confidence 999999999999664 5555 88999976654322 47899999986 432 13 79999999 799999997
Q ss_pred --CcEEEEEecCc-------------------cccCCCCCCCCCCCCCC--cCCCCCCCCCCCccccCCCCCeEEEeceE
Q 004084 293 --NMVVIEFEDRK-------------------LVPLPPADPLRNYTRGE--TRGGVDRSDVKPLQIVQPEGPSFRVNGYF 349 (775)
Q Consensus 293 --~~~vv~i~d~~-------------------~~p~p~~~~~~~Y~~~~--~~~~~~r~dlkPl~i~QPeG~sF~V~G~~ 349 (775)
++||++|++.+ .+++| .+|.+.. .+....|.++ ||+|+||||+||+|+|++
T Consensus 239 ~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~~~~p-----~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v~g~~ 312 (746)
T 1tu5_A 239 PADWTVQKVFFQGRYYENLAQLEEQFEAGQVNVVVIP-----DDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSVQGNR 312 (746)
T ss_dssp GGGCEEEEEEETTEEESSHHHHHHHHHTTCCCCCCCC-----C-----------------------------CEEEETTE
T ss_pred cccCEEEEEEECCCccCchhhhhcccccCCcccccCc-----cccCcccccccccccCCCC-CcceeCCCCCCEEecCCc
Confidence 69999997432 11221 1244433 2222125555 999999999999999999
Q ss_pred EeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCC
Q 004084 350 VQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCD 429 (775)
Q Consensus 350 V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcD 429 (775)
|+||||+||||||+||||+||||+|+ | |+|+||+|||||+||||||++++.+++|||. +||+|.+||+|++|||
T Consensus 313 V~W~~W~f~vgf~~reGlvL~dv~y~----g-r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~-~yG~G~~a~~L~~GcD 386 (746)
T 1tu5_A 313 VASSLWTFSFGLGAFSGPRVFDVRFQ----G-ERLAYEISLQEAGAVYGGNTPAAMLTRYMDS-GFGMGYFATPLIRGVD 386 (746)
T ss_dssp EEESSEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSHHHHHCEEEGG-GTCTTTTBCCCCBTTT
T ss_pred ccCCCcEEEEecCCCCceEEEeeEEC----C-eeEEEEEEeeeEEeecCCCCchhhcceeecc-ccCcccccccCccCCC
Confidence 99999999999999999999999997 4 7899999999999999999666666666665 6999999999999999
Q ss_pred CCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCc-cccccc--cCCCceeEeeeeEEEEEEeeeecccceeEEEEEccC
Q 004084 430 CLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQD--WRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQD 506 (775)
Q Consensus 430 Cpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d--~r~g~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qD 506 (775)
|||+|+|||+++++.+|+|++++|||||||+|+|+ ||||+| |+ +.++++|+|+||||+|+|||||||||+|+||||
T Consensus 387 Cpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~G~~lwkH~~~~~~-~~~~v~r~r~LVvr~i~TVgNYdYi~~w~F~qd 465 (746)
T 1tu5_A 387 CPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRRHHSDFLS-HYFGGVAQTVLVFRSVSTMLNADYVWDMVFYPN 465 (746)
T ss_dssp BCTTSEEEEEEEEESSSSCEEEEEEEEEEEEEEEEEEEECCCSTTC-CCCCEEEEEEEEEEEEEEETTEEEEEEEEECTT
T ss_pred CCCCCEEEeeEEecCCCCEEEcCCeEEEEEeeCCeeeeeecccccC-CceeeecccEEEEEEEEeecccceEEEEEEecC
Confidence 99999999999999999999999999999999998 899999 77 788999999999999999999999999999999
Q ss_pred CcEEEEEEEeeEEEeeecCCCCCCCccccccCCCccccceeeEEEEeecccCCCCCCcccEEEEEeeeecCCCCCCCCCc
Q 004084 507 GKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVHNN 586 (775)
Q Consensus 507 GtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~~~ 586 (775)
|+||++|+|||||++.++.+++ .+|||+|+|+++|++|||+|+||||||||| .+|+|++++++..+. .|||++
T Consensus 466 G~Ie~ev~aTGil~t~~~~~~~-~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG----~~Nsv~~~d~~~~~~--~np~~~ 538 (746)
T 1tu5_A 466 GAIEVKLHATGYISSAFLFGAA-RRYGNQVGEHTLGPVHTHSAHYKVDLDVGG----LENWVWAEDMAFVPT--AIPWSP 538 (746)
T ss_dssp SCEEEEEEEEECCCCEECCTTG-GGGEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--EETTEE
T ss_pred CcEEEEEEecceEeeeecCCCC-CCCcceecCCccccccceEEEEEecccccC----CCCEEEEEeeEEccc--CCCCCc
Confidence 9999999999999999987654 789999999999999999999999999997 699999999987765 399999
Q ss_pred c-----eEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCCceeEEEecCCCCCCCCCCChhhhhhhhccccceEE
Q 004084 587 A-----FYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNLWV 661 (775)
Q Consensus 587 ~-----~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwV 661 (775)
+ |+++++.+++|.+|++++++.++|+| |+|++++|++|+|+||||+|++++.+|+.++|...+||+|++|||||
T Consensus 539 ~~~~~~~~~~~t~~~tE~~a~~~~~~~~~r~~-ivn~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwV 617 (746)
T 1tu5_A 539 EHQIQRLQVTRKQLETEEQAAFPLGGASPRYL-YLASKQSNKWGHPRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAI 617 (746)
T ss_dssp EEEEEEEEEEEEECCBGGGGEEETTSCCCSEE-EEEEEEECTTSCEEEEEEEEECBCCCCCCTTSTTGGGGGGGGEEEEE
T ss_pred ccccceeEEEEEEeeehhhhccccCCCCceEE-EeCCCCcCCCCCcceEEECcCCcccccCCCcchhhccccccccceEE
Confidence 9 99999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred eeccCCccCCCCCCCCCCCCC--CCChhhhcccCCceecCCcEEEEeeccccCCCCCCCCCc--ccceeeEEEEeCCCCC
Q 004084 662 TAYARDEMFPGGEFPNQNPRI--GEGLPAWVKQNRPLEESDIVLWYVFGITHVPRLEDWPVM--PVERIGFMLMPHGFFN 737 (775)
Q Consensus 662 T~y~d~E~~asG~y~nq~~~~--~~gl~~~~~~nesI~neDiV~W~t~G~~HiPr~ED~PvM--P~~~~~f~LrP~nFFd 737 (775)
|||+|+|+||+|+| ||+... ..+|++|+ +||+|+|+|||||||||+||+||+|||||| |++++||+|||+|||+
T Consensus 618 T~y~d~E~~aag~y-nq~~~~~~~~~~~~~~-~~e~I~n~DiV~W~t~G~~HiPr~ED~PvM~tp~~~~gf~LrP~nFF~ 695 (746)
T 1tu5_A 618 TQRKETEPSSSSVF-NQNDPWTPTVDFSDFI-NNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFD 695 (746)
T ss_dssp EECCTTCCCSSCTT-TTTCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCCCSCCEEEEEEEESSSS
T ss_pred eccCCCcccCCccc-cccCCCCCCccHhhhc-CCCCccCCceEEEEecccccCCChhccCccCCCccEEEEEEEeCCCCC
Confidence 99999999999999 666432 25789999 999999999999999999999999999999 8899999999999999
Q ss_pred CCCCCCCCCC
Q 004084 738 CSPAVDVPPS 747 (775)
Q Consensus 738 ~nPalDvP~s 747 (775)
+||+||+|++
T Consensus 696 ~nP~ld~p~~ 705 (746)
T 1tu5_A 696 QEPSMDSADS 705 (746)
T ss_dssp SSCCCC----
T ss_pred CCCcccCCCc
Confidence 9999999998
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=2.2e-152 Score=1318.04 Aligned_cols=622 Identities=24% Similarity=0.334 Sum_probs=518.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCCCceE
Q 004084 79 HPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRRA 158 (775)
Q Consensus 79 HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P~R~A 158 (775)
-++..||++|++++.+.|.+... +......-..|.|+.|+++|++ +|+|+++|.+++++++ +|+|+|
T Consensus 11 ~vf~dLs~~E~~~V~~~L~~~~~-------l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~-----~P~R~A 77 (731)
T 3hi7_A 11 GVFSDLSNQELKAVHSFLWSKKE-------LRLQPSSTTTMAKNTVFLIEML-LPKKYHVLRFLDKGER-----HPVREA 77 (731)
T ss_dssp GGGCCCCHHHHHHHHHHHHTCGG-------GCBCCTTSSCSSSEEEEEEEEE-CCCHHHHHHHHHHCCC-----CCCCEE
T ss_pred CccccCCHHHHHHHHHHHhcCCC-------CCCcccccCCccCCeEEEEEec-CCCchhhhhhhcCCCC-----CCCcce
Confidence 45899999999999999987521 2222223445666666666665 6666666677888774 789999
Q ss_pred EEEEEECCC--CcEEEEEE-eCCcccc----ccccccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHc-----ChhHHH
Q 004084 159 RLVVYNKKS--NETSIWIV-ELSQVHA----VTRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKA-----FPPFKE 226 (775)
Q Consensus 159 ~vv~~~~~~--~~~~e~iV-~L~~~~~----~~~~~~~~~~v~~~~~~~~~~pp~~~~E~~~~e~~~~~-----~p~~~~ 226 (775)
+|+++++++ ....|++| +|+.... .+|++. .+|...+|++.-|+..+.+++++ ...+++
T Consensus 78 ~vvi~fG~~~~P~v~Ey~VGPLP~p~~~~~l~~~~~~---------~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~~ 148 (731)
T 3hi7_A 78 RAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGY---------QSSWASRPISTAEYALLYHTLQEATKPLHQFFLN 148 (731)
T ss_dssp EEEEEECSSSSCEEEEEEEECSSSCCEEEEESCCTTC---------CCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHHH
T ss_pred EEEEEcCCCCCCeeEEEEEcCCCCCCeeeecccCCCC---------cCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999885 34679999 9984100 011111 23444588998899998888876 233333
Q ss_pred HH-HHc-CCCCCCeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCc-----EEEEE
Q 004084 227 AM-KKR-GIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNM-----VVIEF 299 (775)
Q Consensus 227 a~-~~r-gl~~~~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~-----~vv~i 299 (775)
.+ ..+ ++++.|++..+.-|.|+.+ ++|. .|+.|+|. .++.|.||+ ||+++||+.+. +|.+|
T Consensus 149 ~~~~~~~~~~~~cL~~~~~~P~~~~s-----g~r~-~W~~~~~~-----~~g~~l~P~-gl~~~vDh~~~Dps~W~v~~v 216 (731)
T 3hi7_A 149 TTGFSFQDCHDRCLAFTDVAPRGVAS-----GQRR-SWLIIQRY-----VEGYFLHPT-GLELLVDHGSTDAGHWAVEQV 216 (731)
T ss_dssp HHSCBSSSCSSSBEEEEECSSCSSST-----TCCE-EEEEEEEC-----STTGGGCEE-EEEEEEECCSSSGGGCEEEEE
T ss_pred HhCceecCCCCCEEeeecCCCCccCC-----CCEE-Eehheecc-----CCCceeecc-ceEEEEecCCCChHHcEEEEE
Confidence 33 111 2455678888887888754 3355 68999987 357899999 89999999997 44443
Q ss_pred e-----------------cCccccC--CCCCCCC----------CCCCCCcCCC-CCCCCCCCccccCCCCCeEEEeceE
Q 004084 300 E-----------------DRKLVPL--PPADPLR----------NYTRGETRGG-VDRSDVKPLQIVQPEGPSFRVNGYF 349 (775)
Q Consensus 300 ~-----------------d~~~~p~--p~~~~~~----------~Y~~~~~~~~-~~r~dlkPl~i~QPeG~sF~V~G~~ 349 (775)
- ++.+..+ +.....+ .|..-..++. ..++++|||+|+||||+||+|+|++
T Consensus 217 ~Yng~~y~s~eel~~~y~~g~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~~ 296 (731)
T 3hi7_A 217 WYNGKFYGSPEELARKYADGEVDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNA 296 (731)
T ss_dssp EETTEECSSHHHHHHHHHTTCCCCCCCCCCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETTE
T ss_pred EECCEecCCHHHHHHHHhCCCeeEeccCCCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCCE
Confidence 2 2322221 2111101 1322223332 2378999999999999999999999
Q ss_pred EeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCC
Q 004084 350 VQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCD 429 (775)
Q Consensus 350 V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcD 429 (775)
|+||||+||||||+||||+||||+|+ | |||+||+|||||+||||||+++|++|+|||+| ||+|.+||+|++|||
T Consensus 297 V~W~~W~F~vgfn~reGlvL~dV~y~----g-r~v~YrlSlsEm~VpYgdp~p~~~~k~~fD~G-yG~G~~an~L~lGcD 370 (731)
T 3hi7_A 297 VLYGGWSFAFRLRSSSGLQVLNVHFG----G-ERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGID 370 (731)
T ss_dssp EEEBTEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-GTGGGCCCCCCBTTT
T ss_pred EEecCcEEEEecCCCCCcEEEeEEEC----C-eeEEEEeeeeeeEEccCCCCCccccceeeecC-cCccccccccccCCC
Confidence 99999999999999999999999997 3 78999999999999999999999999999999 999999999999999
Q ss_pred CCCCeEEeeeeeecCCCCeEEeeceEEEeeccCCc-ccccc--ccCCCc--eeEeeeeEEEEEEeeeecccceeEEEEEc
Q 004084 430 CLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQ--DWRTGF--AEVRRSRRLTVSFICTVANYEYGFYWHFY 504 (775)
Q Consensus 430 Cpg~i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~--d~r~g~--~~v~r~r~LVvr~I~TVgNYDYif~w~F~ 504 (775)
|||+|+|||+++++++|+|++++|||||||+|+|+ +|||+ +|+++. .+++|+|+||||+|+|||||||||+|+||
T Consensus 371 Cpg~i~YlD~~~~~~~G~p~~~~naICihE~d~Gi~~~kHtd~~~r~~~~~~~~~r~r~LVvr~I~TVgNYDYif~w~F~ 450 (731)
T 3hi7_A 371 CPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNADYIWDFIFY 450 (731)
T ss_dssp BCTTSEEEEEEEEESCSSCEEEEEEEEEEEEECSSCSEEEEEECSSSSEEEEEEECCEEEEEEEEECSSSEEEEEEEEEC
T ss_pred CCCCCEEEeeEEecCCCCEEecCCEEEEEEeeCCeeEEEecccccCCccceeecccccEEEEEEeeecccccEEEEEEEe
Confidence 99999999999999999999999999999999998 78996 488774 47999999999999999999999999999
Q ss_pred cCCcEEEEEEEeeEEEeeecCCCCCCCccccccCCCccccceeeEEEEeecccCCCCCCcccEEEEEeeeecCCCCCCCC
Q 004084 505 QDGKIEAEVKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKPGGSNVH 584 (775)
Q Consensus 505 qDGtIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~~~~np~ 584 (775)
|||+||+||+|||||++.++.+++ .+|||+|+|+++|++|||+||||||||||| .+|+|++++++.++. .||+
T Consensus 451 qdGsIe~eVraTGilst~~~~~~~-~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~--~nP~ 523 (731)
T 3hi7_A 451 PNGVMEAKMHATGYVHATFYTPEG-LRHGTRLHTHLIGNIHTHLVHYRVDLDVAG----TKNSFQTLQMKLENI--TNPW 523 (731)
T ss_dssp TTSCEEEEEEEEECCCEEECCGGG-GGSEEEEETTEEEECEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE--ECTT
T ss_pred cCCeEEEEEEEEEEEeecccCCCC-CCCcceecCCcccccceeEEEEEeccccCC----CCCEEEEEeceecCC--CCCC
Confidence 999999999999999999987654 689999999999999999999999999997 699999999987664 5788
Q ss_pred Ccc-----eEEEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCCceeEEEecCCCCCCCCCCChhhhhhhhccccce
Q 004084 585 NNA-----FYAEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDATVFRRAAFLKHNL 659 (775)
Q Consensus 585 ~~~-----~~~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~l 659 (775)
+++ ++++++++++|++|++++++.++|+|+|+|+ ++|++|+|+||||+|++.+..++.++|...+||+||+|||
T Consensus 524 ~~~~~~~~~~~~~t~l~tE~ea~~~~~~~~~R~~~i~N~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~l 602 (731)
T 3hi7_A 524 SPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPL 602 (731)
T ss_dssp CTTSEEEEEEEEEEEECBGGGGCBCTTSCCCSEEEEEEE-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCSE
T ss_pred CCCccceeEEEEEEEccchhhhhhccCCCCceEEEEeCC-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccce
Confidence 776 5789999999999999999999999999999 8899999999999998766566668898899999999999
Q ss_pred EEeeccCCccCCCCCCCCCCCCC-CCChhhhcccCCceecCCcEEEEeeccccCCCCCCCCCc--ccceeeEEEEeCCCC
Q 004084 660 WVTAYARDEMFPGGEFPNQNPRI-GEGLPAWVKQNRPLEESDIVLWYVFGITHVPRLEDWPVM--PVERIGFMLMPHGFF 736 (775)
Q Consensus 660 wVT~y~d~E~~asG~y~nq~~~~-~~gl~~~~~~nesI~neDiV~W~t~G~~HiPr~ED~PvM--P~~~~~f~LrP~nFF 736 (775)
|||||+|+|+||+|+|++|++.. .+||++|+++||+|+|||||||||||+||+||+|||||| |++++||+|||+|||
T Consensus 603 wVT~y~d~E~~aag~y~~~s~~~~~~gl~~w~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMptp~e~~~f~LrP~nFF 682 (731)
T 3hi7_A 603 AVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFF 682 (731)
T ss_dssp EEEECCGGGSCSCCTTTTTCSSSCSCCTTHHHHTCCBCSSEEEEEEEEEEEEECCCGGGSSCBCSTTCEEEEEEEEESSS
T ss_pred EEecCCCCccCCCccccccCCCCCCCCHHHHhhCCCceecCceEEEEecccccCCChhhcCccccccceeEEEEEccCCC
Confidence 99999999999999997776643 369999999999999999999999999999999999999 669999999999999
Q ss_pred CCCCCCCCCCCc
Q 004084 737 NCSPAVDVPPSA 748 (775)
Q Consensus 737 d~nPalDvP~s~ 748 (775)
|+||+||++++.
T Consensus 683 d~nPalds~~~v 694 (731)
T 3hi7_A 683 PEDPSLASRDTV 694 (731)
T ss_dssp SSCGGGGCTTCE
T ss_pred CCCccccCcceE
Confidence 999999999875
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=4.7e-151 Score=1308.59 Aligned_cols=627 Identities=20% Similarity=0.314 Sum_probs=519.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCCChhhhhccccccCCCCCCCCCcCcCCCCCCCCCCC
Q 004084 75 PQTSHPLDPLSPAEISVAVATVRAAGPTPEVRDSMRFVEVVLVEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLP 154 (775)
Q Consensus 75 ~~~~HPLDPLt~~EI~~a~~ivr~~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~p~~~~~ll~~~~~~~~~p~~~P 154 (775)
+.-..++..||++|++++.+.|.+... +......-..|.|+.|+++|++ +|+|+++|.+++++++ +|
T Consensus 62 ap~~~vfadLs~~E~~aV~~~L~~~~~-------l~Lt~~~~a~~~dN~i~~iEl~-~P~K~~vL~~LD~~~~-----~P 128 (797)
T 3pgb_A 62 APKENVWYGLTDDETADVAKWLFGRPE-------LNLTTTENAGEWDNTIALIELH-RPNKSEAIPYLDGSGP-----AP 128 (797)
T ss_dssp CSSCCSSSCCCHHHHHHHHHHHHTCTT-------TCCCCTTTCCSSSEEEEEEEEE-CCCHHHHHHHHHC--------CC
T ss_pred CCCCCcccccCHHHHHHHHHHHhcCCC-------CCCcccccCCccCCeEEEEEee-CCCHHHHHHhhcCCCC-----CC
Confidence 334799999999999999999987532 1112223344566666666655 5666666677888875 78
Q ss_pred CceEEEEEEECCC--CcEEEEEE-eCCcccc-----c-----cccccccccEEEeeeCCCCCCCCCHHHHHHHHHHHHcC
Q 004084 155 PRRARLVVYNKKS--NETSIWIV-ELSQVHA-----V-----TRGGHHRGKVVSSRVVPDIQPPMDAEEYAQCEAAVKAF 221 (775)
Q Consensus 155 ~R~A~vv~~~~~~--~~~~e~iV-~L~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~pp~~~~E~~~~e~~~~~~ 221 (775)
+|+|+|+++++++ ....|++| +|+.... . .++| | .++...++++..|+..+.+++++-
T Consensus 129 ~R~A~vvi~fG~~~~P~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~---g------~~~~~~r~~~~~e~~~l~~~~~~~ 199 (797)
T 3pgb_A 129 TRHAHVRLNNRATTDPYFADILVGPLPVSNATTWEPLEFPYTRKTQ---G------QVRNVEPDGETVYSEWLFKISASI 199 (797)
T ss_dssp CCEEEEEEEECSSSSCEEEEEEEESSSCSTTCEEEECCTTCSSCST---T------EEECSCCCTTHHHHTTHHHHHHHT
T ss_pred CeeEEEEEEcCCCCCCceEEEEEcCCCCCCcceeEEccccccCCCC---C------CCCcccCcchhhHHHHHHHHHHHH
Confidence 9999999999875 34679999 8984210 0 1111 1 345567888889999999988875
Q ss_pred hhHHHHHHH---cCCCCCCeEEEeeccccccCCCCCCCCceEEEEEEeecCCCCCCCCccCCCCCCeEEEEeccCc----
Q 004084 222 PPFKEAMKK---RGIEDMDLVMVDAWCVGYYSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVLVDMQNM---- 294 (775)
Q Consensus 222 p~~~~a~~~---rgl~~~~~V~~dpw~~G~~~~~~~~~rRl~~~~~f~r~~~~~~~~n~Ya~Pi~gl~~~vD~~~~---- 294 (775)
......+.. .|+.+.++++.+.-|.|+.+ ++|. +|++|.|...+ ..+++|+||+ ||+++||+.+.
T Consensus 200 ~~~~~~l~~~t~~~~~~~~L~~~~~~P~g~~s-----g~r~-~W~~~~~~~~g-~~d~~~lhP~-gl~~lvDh~~~Dps~ 271 (797)
T 3pgb_A 200 ADITLDLWNGTALGLENDTLDIWGIDPLWQDD-----GRII-RWDMFWNMADD-EFDSETLLPL-GLYLKSDVTGRDPSQ 271 (797)
T ss_dssp HHHHHHHHSCCCSSSTTCCEEEEECSSCBCST-----TCCE-EEEEEEECCCT-TCCCGGGCEE-EEEEEEECCSSCGGG
T ss_pred HHHHHHHhhcccccCCCCeEeeeccCCCCcCC-----CCEE-EeeeeeccCCC-ccccceeecc-ceEEEEecCCCChhH
Confidence 444444432 34445567777776777643 3355 89999997421 1356999999 89999999987
Q ss_pred -EEEEEe-----------------cCccccCCCCCCCCCCCCCCcCCC-CCCCCCCCccccCCCCCeEEEe--ceEEeee
Q 004084 295 -VVIEFE-----------------DRKLVPLPPADPLRNYTRGETRGG-VDRSDVKPLQIVQPEGPSFRVN--GYFVQWQ 353 (775)
Q Consensus 295 -~vv~i~-----------------d~~~~p~p~~~~~~~Y~~~~~~~~-~~r~dlkPl~i~QPeG~sF~V~--G~~V~Wq 353 (775)
+|.++- ++.+..+.+. ..+.|.....++. ..|+++|||+|+||||+||+|+ |++|+||
T Consensus 272 W~v~~v~Yng~~y~s~eel~~~y~~g~~~~~~~~-~~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~W~ 350 (797)
T 3pgb_A 272 WKLLGWMYNDIFYETTEEFRKAYWSPGFVKLKPN-VDGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWM 350 (797)
T ss_dssp CEEEEEEETTEEESSHHHHHHHHTSTTCCCCCCC-CCCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEEET
T ss_pred cEEEEEEECCEecCCHHHHHHHHhCCCeeecCCC-CCCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEEeC
Confidence 444432 2333333221 1235543333332 2478999999999999999998 7999999
Q ss_pred ceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEeecCCCCCccccceeeecCCCCCccCCCCCCCCCCCCCC
Q 004084 354 KWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGY 433 (775)
Q Consensus 354 ~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~VpYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~ 433 (775)
||+||||||+||||+||||+|+ | |||+||+|||||+|||||+ +|+++|++||+||||||.+||+|++||||||+
T Consensus 351 ~W~F~vgfn~ReGlvL~dV~y~----g-r~V~YrlSlsEm~VPYg~~-~P~~~~~af~D~eyG~G~~an~L~lGcDCpg~ 424 (797)
T 3pgb_A 351 DFSFYIAFNRDTGLSLFDIKYK----G-QRVLYELGLQEALAHYAAN-DPVQSSVAYLDSYYGFGPYAFELLKGYDCPSY 424 (797)
T ss_dssp TEEEEEEEETTTEEEEEEEEET----T-EEEEEEEEEEEEEEEECCS-SHHHHHCEEEGGGTCSGGGCCCCCBTTTBCTT
T ss_pred CcEEEEecCCCCceEEEccccC----C-eeEEEEeEeeeeEEeCCCC-ChhhhcceeeecccCCccccccCccCCCCCCC
Confidence 9999999999999999999997 3 7899999999999999995 58999999999999999999999999999999
Q ss_pred eEEeeeeeecCCCCeEEeeceEEEeeccCCc-cccccccCCCceeEeeeeEEEEEEeeeecccceeEEEEEccCCcEEEE
Q 004084 434 IKYFDAHFTNFTGGVETIENCVCLHEEDHGM-LWKHQDWRTGFAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAE 512 (775)
Q Consensus 434 i~YlD~~~~~~~G~p~~~~naICihE~D~Gi-lwkH~d~r~g~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qDGtIe~e 512 (775)
|+|||+++.+. |+|++++|||||||+|+|+ ||||+++ +.++++|+|+||||+|+|||||||||||+|||||+||+|
T Consensus 425 i~YlD~~~~~~-~~p~~~~NaICihE~D~G~~lwKHt~~--~~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~e 501 (797)
T 3pgb_A 425 ASYLNTSFYKD-EETHTHVDSLCLFEFDADYPMARHSTS--EFVSVTKNVYFTLRSVSTIGNADYMFSYNFHMDGTIGVE 501 (797)
T ss_dssp CEEEEEEEEET-TEEEEEEEEEEEEEEECSSCSEEEECS--SEEEEECCEEEEEEEEEEETTEEEEEEEEECTTSCEEEE
T ss_pred CEEeeeEEecC-CCceEeccEEEEEEeeCCceeEEeccC--CcceEEeccEEEEEEEeeeccccEEEEEEEecCCeEEEE
Confidence 99999999987 7899999999999999997 9999985 789999999999999999999999999999999999999
Q ss_pred EEEeeEEEeeecCCCCCCCccccccCCCccccceeeEEEEeecccCCCCCCcccEEEEEeeeecCC---CCCCCCCcceE
Q 004084 513 VKLTGVLSLGALQPGESRKYGTMIAPSLYAPVHQHFFIARMDMEVDCKPGEAFNQVVEVDVKVEKP---GGSNVHNNAFY 589 (775)
Q Consensus 513 v~aTGil~t~~~~~~~~~~yGt~V~p~v~a~~HqH~f~~RlD~dVDG~~gg~~Nsv~~~~~~~~~~---~~~np~~~~~~ 589 (775)
|+|||||++..+. + ..+|||+|+|+++|++|||+||||||||||| .+|+|++++++..+. +..++++++|+
T Consensus 502 VraTGiLst~~~~-~-~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG----~~Nsv~~~d~~~~~~~~p~~p~~~~n~~~ 575 (797)
T 3pgb_A 502 VRASGYIQSAYYA-N-NQDFGYQIHDSLSGSMHDHVLNFKADFDILG----PNNTIELVSVVPVTKQFSWSGNKTRNTMQ 575 (797)
T ss_dssp EEEEECCCCEECT-T-CGGGCCEEETTEECCCEEEEEEEEEEECTTS----SEEEEEEEEEEEEEEECTTTTTCEEEEEE
T ss_pred EEEEEEEEecccC-C-CCCccceecCCccccccceEEEEeeccCCCC----CCCeEEEEeeEEccCCCCCCCCcccceeE
Confidence 9999999999653 4 5789999999999999999999999999997 699999999886542 22346778999
Q ss_pred EEEEEeehhhhhhhhcCCCCCeEEEEEeCCCcCCCCCceeEEEecCCCCCCCCCCChh-hhhhhhccccceEEeeccCCc
Q 004084 590 AEETLLKSEMQAMRDCNPLTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGPDAT-VFRRAAFLKHNLWVTAYARDE 668 (775)
Q Consensus 590 ~~~t~l~tE~ea~~~~~~~~~R~w~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~-~~~ra~fa~~~lwVT~y~d~E 668 (775)
++++++++|.||+++++++++|+|+|+|++++|++|+|+||||+|+.++++|+.++|. ..|||+||+||||||||+|+|
T Consensus 576 ~~~t~l~tE~eA~~~~~~~~~r~~~ivN~~~~N~~G~pvgYkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d~E 655 (797)
T 3pgb_A 576 LGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDFE 655 (797)
T ss_dssp EEEEECCBGGGCEECCCGGGCEEEEEEEEEEECTTSCEEEEEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCTTC
T ss_pred EEEEEccchhhhhhhcCCCCCceEEEeCCCCcCCCCCeeeEEEccCCCCccccCCCchhhhhhchhhhCceEEecCCCCc
Confidence 9999999999999999999999999999999999999999999999888888877776 568899999999999999999
Q ss_pred cCCCCCCCCCCCCC-CCChhhhcccCCceecCCcEEEEeeccccCCCCCCCCC--cccceeeEEEEeCCCCCCCCCCCCC
Q 004084 669 MFPGGEFPNQNPRI-GEGLPAWVKQNRPLEESDIVLWYVFGITHVPRLEDWPV--MPVERIGFMLMPHGFFNCSPAVDVP 745 (775)
Q Consensus 669 ~~asG~y~nq~~~~-~~gl~~~~~~nesI~neDiV~W~t~G~~HiPr~ED~Pv--MP~~~~~f~LrP~nFFd~nPalDvP 745 (775)
+||+|+|++|+++. ..+|.+|+ +||+|+|||||||||||+||+||+||||| ||++++||+|||+||||+||+||+|
T Consensus 656 ~~aaG~y~~qs~~~~~v~~~~~~-~nesI~neDiVlW~t~G~~HiPr~ED~Pvt~MP~e~~gf~LrP~nFFd~NPald~~ 734 (797)
T 3pgb_A 656 PTSAHPYNSQDIHNPPVDFSTFF-NGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSRETV 734 (797)
T ss_dssp CCSCCTTGGGCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCTTTSEEEEEEEEESCSSSCGGGGCS
T ss_pred cCCCCCCcccCCCCCccchhhhc-CCCccccCceEEEEecccccCCChhhCCCccCCcceeEEEEEcCCCCCCCccccCc
Confidence 99999999999753 25788998 99999999999999999999999999999 9999999999999999999999999
Q ss_pred CCc
Q 004084 746 PSA 748 (775)
Q Consensus 746 ~s~ 748 (775)
++.
T Consensus 735 ~~v 737 (797)
T 3pgb_A 735 NMV 737 (797)
T ss_dssp CEE
T ss_pred cce
Confidence 864
No 10
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=8.94 E-value=4.9e+02 Score=24.57 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=46.5
Q ss_pred CCCccccCCCCCeEEEeceEEeeeceEEEEEecCCcceeEEeeEEecCCCCeeeEEEEeeeeeEEeecCCCCCcccccee
Q 004084 330 VKPLQIVQPEGPSFRVNGYFVQWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRSVAHRLSFVEMVVPYGDPNEPHYRKNA 409 (775)
Q Consensus 330 lkPl~i~QPeG~sF~V~G~~V~Wq~W~F~vgf~~reGlvL~dV~y~d~g~g~R~I~YrlSlsEm~VpYgdp~~p~~~k~a 409 (775)
+|-...+=+||..|+| +-+|+|.-+.=.||...++.++- | -+| -...+|+--|+....++.....
T Consensus 34 ~k~~~f~iKEG~~Y~i--------ki~F~V~~eivsGLkY~q~v~r~---G-i~V---dk~~~mlGsy~P~~e~y~~~~~ 98 (141)
T 1kmt_A 34 FKKQSFVLKEGVEYRI--------KISFRVNREIVSGMKYIQHTYRK---G-VKI---DKTDYMVGSYGPRAAAYEFLTP 98 (141)
T ss_dssp GGGCCEEEETTCEEEE--------EEEEEECSSCEEEEEEEEEEEET---T-EEE---EEEEEEEEEECCCSSCEEEECC
T ss_pred hccCceEccCCcEEEE--------EEEEEEccccccCcEEEEEEEEC---C-EEE---CcceEeeeccCCCCCcceecCC
Confidence 3444445578888887 56789998999999999999973 3 334 3567999999976666544433
Done!