Query 004087
Match_columns 774
No_of_seqs 397 out of 2519
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 17:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10537 voltage-gated potassi 100.0 4.2E-30 9E-35 285.8 22.2 231 293-549 142-382 (393)
2 PRK09496 trkA potassium transp 100.0 6.3E-29 1.4E-33 282.1 31.0 313 383-756 1-323 (453)
3 KOG1420 Ca2+-activated K+ chan 100.0 1.3E-28 2.9E-33 269.0 14.5 472 263-755 227-848 (1103)
4 PF06241 DUF1012: Protein of u 99.9 1.5E-26 3.3E-31 223.1 16.5 201 461-670 1-201 (206)
5 COG0569 TrkA K+ transport syst 99.9 1.1E-22 2.5E-27 211.1 19.2 214 383-621 1-216 (225)
6 PRK09496 trkA potassium transp 99.9 3.6E-20 7.8E-25 210.6 23.8 213 380-621 229-444 (453)
7 KOG3193 K+ channel subunit [In 99.8 1.5E-20 3.3E-25 205.3 14.1 319 285-616 184-546 (1087)
8 PRK10669 putative cation:proto 99.7 5E-16 1.1E-20 181.8 21.5 141 381-545 416-556 (558)
9 PRK03659 glutathione-regulated 99.6 2.1E-14 4.5E-19 169.3 22.4 131 381-536 399-530 (601)
10 PF02254 TrkA_N: TrkA-N domain 99.6 4.9E-15 1.1E-19 137.3 13.0 113 385-519 1-113 (116)
11 PRK03562 glutathione-regulated 99.6 9.6E-14 2.1E-18 164.1 22.2 132 381-536 399-530 (621)
12 PF07885 Ion_trans_2: Ion chan 99.1 1.2E-10 2.6E-15 101.3 6.8 72 295-366 3-78 (79)
13 PF02254 TrkA_N: TrkA-N domain 98.9 5.6E-09 1.2E-13 96.7 10.0 89 645-757 1-89 (116)
14 KOG3713 Voltage-gated K+ chann 98.9 1.3E-09 2.8E-14 121.5 6.4 80 289-368 347-433 (477)
15 COG1226 Kch Kef-type K+ transp 98.8 1.9E-07 4.1E-12 92.9 15.9 143 379-545 18-161 (212)
16 KOG1545 Voltage-gated shaker-l 98.7 2.3E-09 4.9E-14 114.4 -2.1 79 289-367 363-448 (507)
17 COG0569 TrkA K+ transport syst 98.6 1.1E-07 2.3E-12 99.3 10.2 92 643-756 1-93 (225)
18 KOG1419 Voltage-gated K+ chann 98.6 2.1E-08 4.5E-13 112.3 3.4 110 255-369 205-326 (654)
19 PRK10537 voltage-gated potassi 98.6 1.2E-07 2.5E-12 106.6 9.0 90 642-757 240-329 (393)
20 PRK03562 glutathione-regulated 98.6 2.2E-07 4.7E-12 110.5 10.3 92 642-757 400-491 (621)
21 PRK03659 glutathione-regulated 98.5 2.5E-07 5.5E-12 109.6 9.8 92 642-757 400-491 (601)
22 PLN03192 Voltage-dependent pot 98.5 3.6E-07 7.8E-12 112.2 8.9 51 317-367 254-305 (823)
23 PRK10669 putative cation:proto 98.4 7.4E-07 1.6E-11 104.9 10.0 92 641-756 416-507 (558)
24 KOG4404 Tandem pore domain K+ 98.4 8E-07 1.7E-11 94.5 8.4 80 288-367 161-249 (350)
25 COG0490 Putative regulatory, l 98.2 2.2E-06 4.7E-11 83.6 7.1 65 554-621 88-153 (162)
26 COG3400 Uncharacterized protei 98.0 0.00014 3E-09 78.4 14.3 210 383-620 2-214 (471)
27 PF02080 TrkA_C: TrkA-C domain 97.9 5.9E-06 1.3E-10 69.8 3.1 62 555-620 3-65 (71)
28 KOG4390 Voltage-gated A-type K 97.9 9.9E-07 2.1E-11 95.2 -2.8 94 270-367 311-411 (632)
29 KOG3684 Ca2+-activated K+ chan 97.7 0.0012 2.5E-08 73.9 17.4 91 272-365 241-340 (489)
30 PF01007 IRK: Inward rectifier 97.7 6.5E-05 1.4E-09 82.8 7.1 104 283-390 32-160 (336)
31 KOG0498 K+-channel ERG and rel 97.6 0.00029 6.2E-09 84.1 10.6 55 314-368 295-350 (727)
32 KOG1418 Tandem pore domain K+ 97.6 0.00017 3.8E-09 80.6 8.2 63 311-373 113-176 (433)
33 PF03493 BK_channel_a: Calcium 97.3 0.00069 1.5E-08 62.0 7.4 69 515-585 9-101 (101)
34 PRK06719 precorrin-2 dehydroge 97.2 0.0009 2E-08 66.1 7.2 82 641-753 12-93 (157)
35 KOG4404 Tandem pore domain K+ 97.2 0.00025 5.3E-09 76.0 3.4 121 223-363 6-131 (350)
36 KOG1418 Tandem pore domain K+ 97.2 5.8E-05 1.3E-09 84.4 -1.6 66 293-358 222-296 (433)
37 KOG0501 K+-channel KCNQ [Inorg 97.1 0.0013 2.7E-08 74.9 7.5 55 314-368 424-479 (971)
38 COG3273 Uncharacterized conser 96.9 0.0014 3E-08 65.3 5.3 63 555-620 122-185 (204)
39 KOG1420 Ca2+-activated K+ chan 96.6 0.035 7.6E-07 63.4 14.2 232 381-617 732-1067(1103)
40 PRK06719 precorrin-2 dehydroge 96.6 0.011 2.4E-07 58.4 9.4 83 381-490 12-94 (157)
41 KOG0499 Cyclic nucleotide-gate 96.2 0.0064 1.4E-07 69.7 5.7 96 272-367 347-457 (815)
42 COG1226 Kch Kef-type K+ transp 96.2 0.022 4.8E-07 56.4 9.0 95 640-758 19-113 (212)
43 PRK06718 precorrin-2 dehydroge 95.9 0.017 3.7E-07 59.4 7.0 72 642-732 10-81 (202)
44 TIGR01470 cysG_Nterm siroheme 95.5 0.045 9.7E-07 56.5 8.1 72 642-732 9-80 (205)
45 KOG0500 Cyclic nucleotide-gate 95.5 0.03 6.6E-07 63.4 7.1 54 315-368 185-238 (536)
46 KOG3193 K+ channel subunit [In 95.5 0.047 1E-06 62.0 8.5 114 438-551 762-904 (1087)
47 PRK06718 precorrin-2 dehydroge 94.9 0.12 2.6E-06 53.2 8.9 84 381-489 9-93 (202)
48 PRK05326 potassium/proton anti 94.5 0.05 1.1E-06 64.5 5.6 62 555-621 418-479 (562)
49 TIGR03802 Asp_Ala_antiprt aspa 93.8 0.1 2.2E-06 61.9 6.4 64 554-621 220-284 (562)
50 PF00520 Ion_trans: Ion transp 93.4 0.63 1.4E-05 45.8 10.5 50 312-361 144-200 (200)
51 TIGR01470 cysG_Nterm siroheme 93.2 1.2 2.5E-05 46.1 12.2 84 382-490 9-93 (205)
52 PRK04972 putative transporter; 93.0 0.12 2.5E-06 61.4 5.0 64 554-621 304-367 (558)
53 TIGR03802 Asp_Ala_antiprt aspa 92.6 0.15 3.3E-06 60.4 5.5 64 554-621 304-372 (562)
54 PF03435 Saccharop_dh: Sacchar 92.5 0.61 1.3E-05 52.5 9.9 76 385-470 1-77 (386)
55 PRK03818 putative transporter; 92.5 0.16 3.4E-06 60.2 5.4 62 555-620 292-354 (552)
56 KOG3827 Inward rectifier K+ ch 92.5 0.12 2.7E-06 57.1 4.1 118 270-391 45-189 (400)
57 COG1748 LYS9 Saccharopine dehy 92.5 0.66 1.4E-05 52.4 10.0 130 383-547 2-135 (389)
58 CHL00194 ycf39 Ycf39; Provisio 92.3 0.68 1.5E-05 50.5 9.7 71 644-730 2-73 (317)
59 PLN02366 spermidine synthase 92.2 1.3 2.8E-05 48.7 11.6 103 641-757 91-195 (308)
60 PF13460 NAD_binding_10: NADH( 92.2 0.38 8.2E-06 47.5 6.9 69 645-731 1-70 (183)
61 PRK05562 precorrin-2 dehydroge 91.7 0.69 1.5E-05 48.5 8.4 73 641-732 24-96 (223)
62 PF13460 NAD_binding_10: NADH( 91.6 0.91 2E-05 44.8 8.9 69 385-470 1-70 (183)
63 PRK03818 putative transporter; 91.6 0.28 6.1E-06 58.1 6.0 63 554-621 207-270 (552)
64 PF05368 NmrA: NmrA-like famil 91.5 0.56 1.2E-05 48.5 7.5 72 645-730 1-73 (233)
65 PRK12475 thiamine/molybdopteri 91.2 1.2 2.6E-05 49.6 10.1 80 641-731 23-126 (338)
66 PRK05562 precorrin-2 dehydroge 90.9 3.4 7.3E-05 43.4 12.5 85 382-490 25-109 (223)
67 PRK12475 thiamine/molybdopteri 90.6 2.9 6.3E-05 46.6 12.4 98 381-491 23-141 (338)
68 PF03435 Saccharop_dh: Sacchar 90.2 0.53 1.1E-05 53.0 6.3 76 645-731 1-77 (386)
69 PF01488 Shikimate_DH: Shikima 89.8 0.34 7.4E-06 46.5 3.8 74 641-731 11-85 (135)
70 PLN00141 Tic62-NAD(P)-related 89.8 2.1 4.5E-05 44.9 10.1 77 642-731 17-95 (251)
71 COG0168 TrkG Trk-type K+ trans 89.8 4 8.6E-05 47.9 13.2 73 288-360 399-481 (499)
72 PLN02819 lysine-ketoglutarate 89.8 0.69 1.5E-05 58.4 7.3 79 640-731 567-658 (1042)
73 COG1748 LYS9 Saccharopine dehy 89.7 0.74 1.6E-05 52.0 6.9 76 643-731 2-78 (389)
74 PLN02214 cinnamoyl-CoA reducta 89.6 1.7 3.6E-05 48.1 9.6 105 642-755 10-115 (342)
75 PRK01581 speE spermidine synth 89.5 3.3 7.1E-05 46.6 11.6 107 640-757 149-257 (374)
76 PF00670 AdoHcyase_NAD: S-aden 89.1 0.5 1.1E-05 47.1 4.4 35 641-678 22-56 (162)
77 PRK04972 putative transporter; 89.0 0.71 1.5E-05 54.8 6.4 54 564-621 228-282 (558)
78 PRK08267 short chain dehydroge 88.8 1.7 3.6E-05 45.5 8.5 78 643-731 2-87 (260)
79 PF13241 NAD_binding_7: Putati 88.7 0.43 9.4E-06 43.6 3.4 65 641-731 6-70 (103)
80 COG3263 NhaP-type Na+/H+ and K 88.3 0.63 1.4E-05 52.7 4.9 55 561-620 422-476 (574)
81 cd01078 NAD_bind_H4MPT_DH NADP 88.0 0.85 1.8E-05 46.2 5.5 78 642-730 28-106 (194)
82 PLN02819 lysine-ketoglutarate 87.9 2.8 6.1E-05 53.1 10.9 83 381-470 568-658 (1042)
83 COG1648 CysG Siroheme synthase 87.7 1.4 3E-05 45.8 6.8 72 642-732 12-83 (210)
84 PRK00536 speE spermidine synth 87.7 1.8 3.9E-05 46.5 7.8 74 640-728 71-146 (262)
85 CHL00194 ycf39 Ycf39; Provisio 87.6 4.5 9.8E-05 44.0 11.2 72 383-469 1-73 (317)
86 PRK07688 thiamine/molybdopteri 87.5 2 4.2E-05 47.9 8.3 80 641-731 23-126 (339)
87 COG0373 HemA Glutamyl-tRNA red 87.2 1.1 2.3E-05 51.2 6.0 43 641-688 177-220 (414)
88 PLN03209 translocon at the inn 86.5 1.8 3.9E-05 51.4 7.6 86 640-731 78-169 (576)
89 PF05368 NmrA: NmrA-like famil 86.3 5.1 0.00011 41.4 10.2 71 385-470 1-74 (233)
90 PRK07074 short chain dehydroge 86.1 3.6 7.8E-05 42.9 9.1 78 643-731 3-87 (257)
91 TIGR01181 dTDP_gluc_dehyt dTDP 86.1 2 4.3E-05 45.9 7.3 80 644-731 1-83 (317)
92 COG1087 GalE UDP-glucose 4-epi 85.7 2 4.4E-05 46.8 6.9 101 644-758 2-109 (329)
93 COG1648 CysG Siroheme synthase 85.7 4.1 8.9E-05 42.4 9.0 87 381-491 11-97 (210)
94 TIGR03589 PseB UDP-N-acetylglu 85.6 5.1 0.00011 43.9 10.3 79 643-731 5-84 (324)
95 PLN02657 3,8-divinyl protochlo 85.4 4.3 9.4E-05 45.9 9.9 80 640-730 58-145 (390)
96 PF00070 Pyr_redox: Pyridine n 85.1 1.5 3.1E-05 37.8 4.6 32 644-678 1-32 (80)
97 PF00899 ThiF: ThiF family; I 85.1 4.3 9.3E-05 38.6 8.3 84 642-730 2-101 (135)
98 PLN02823 spermine synthase 85.1 4 8.6E-05 45.5 9.1 80 641-728 103-183 (336)
99 TIGR03466 HpnA hopanoid-associ 85.1 2.9 6.3E-05 45.0 8.0 71 644-730 2-73 (328)
100 PF01210 NAD_Gly3P_dh_N: NAD-d 84.7 1.5 3.2E-05 43.2 5.0 77 644-729 1-77 (157)
101 PRK10637 cysG siroheme synthas 84.5 3.3 7.1E-05 48.0 8.5 72 641-731 11-82 (457)
102 PRK14106 murD UDP-N-acetylmura 84.5 1.8 3.9E-05 49.6 6.4 71 642-731 5-78 (450)
103 PRK06914 short chain dehydroge 84.2 4.4 9.6E-05 42.8 8.8 82 383-470 4-91 (280)
104 cd01078 NAD_bind_H4MPT_DH NADP 84.2 12 0.00027 37.7 11.7 79 382-470 28-107 (194)
105 TIGR00933 2a38 potassium uptak 84.0 4.2 9.1E-05 46.1 9.0 41 310-350 345-389 (390)
106 PF00670 AdoHcyase_NAD: S-aden 83.5 2.8 6E-05 41.8 6.3 66 382-470 23-88 (162)
107 PRK07326 short chain dehydroge 83.4 5.3 0.00012 40.9 8.8 79 642-731 6-92 (237)
108 PLN02583 cinnamoyl-CoA reducta 83.1 7.5 0.00016 41.9 10.2 106 642-756 6-116 (297)
109 PRK09186 flagellin modificatio 83.1 5 0.00011 41.6 8.5 81 382-468 4-91 (256)
110 TIGR00518 alaDH alanine dehydr 83.0 2.7 5.8E-05 47.4 6.8 72 642-729 167-238 (370)
111 cd05291 HicDH_like L-2-hydroxy 82.9 2.2 4.8E-05 46.7 5.9 98 643-757 1-103 (306)
112 cd01075 NAD_bind_Leu_Phe_Val_D 82.8 6.1 0.00013 40.6 8.8 102 382-517 28-134 (200)
113 PF01564 Spermine_synth: Sperm 82.7 3 6.4E-05 44.3 6.7 104 641-757 76-180 (246)
114 COG4262 Predicted spermidine s 82.7 5.4 0.00012 44.5 8.6 80 640-728 288-372 (508)
115 COG0300 DltE Short-chain dehyd 82.5 5.3 0.00011 43.0 8.4 82 381-469 5-93 (265)
116 PRK07688 thiamine/molybdopteri 82.4 16 0.00034 40.8 12.5 98 381-491 23-141 (339)
117 cd01483 E1_enzyme_family Super 82.3 3.6 7.9E-05 39.4 6.6 82 644-730 1-98 (143)
118 TIGR02964 xanthine_xdhC xanthi 82.2 5.2 0.00011 42.6 8.2 85 641-749 99-183 (246)
119 TIGR01832 kduD 2-deoxy-D-gluco 82.0 13 0.00028 38.3 11.1 79 642-731 5-90 (248)
120 cd05213 NAD_bind_Glutamyl_tRNA 81.9 2.3 4.9E-05 46.7 5.6 72 641-731 177-248 (311)
121 PRK06194 hypothetical protein; 81.9 5 0.00011 42.6 8.1 81 643-732 7-94 (287)
122 PF01488 Shikimate_DH: Shikima 81.9 4.5 9.8E-05 38.7 7.0 75 381-470 11-85 (135)
123 PRK07024 short chain dehydroge 81.9 11 0.00024 39.4 10.6 78 643-731 3-88 (257)
124 cd05213 NAD_bind_Glutamyl_tRNA 81.7 8.3 0.00018 42.3 9.9 120 381-527 177-296 (311)
125 PLN00198 anthocyanidin reducta 81.7 11 0.00023 41.3 10.9 80 642-731 9-90 (338)
126 PLN00141 Tic62-NAD(P)-related 81.2 5.8 0.00013 41.5 8.2 77 382-470 17-95 (251)
127 TIGR00934 2a38euk potassium up 81.1 5.1 0.00011 49.0 8.4 62 290-352 586-661 (800)
128 PF13241 NAD_binding_7: Putati 80.9 9.3 0.0002 34.8 8.4 80 381-491 6-85 (103)
129 PRK12829 short chain dehydroge 80.9 3.8 8.2E-05 42.7 6.7 80 641-731 10-96 (264)
130 cd01065 NAD_bind_Shikimate_DH 80.8 3.4 7.4E-05 39.7 5.8 75 641-732 18-92 (155)
131 COG0421 SpeE Spermidine syntha 80.7 11 0.00023 41.1 10.1 101 643-757 78-179 (282)
132 TIGR01472 gmd GDP-mannose 4,6- 80.6 5.1 0.00011 44.0 7.8 83 643-731 1-88 (343)
133 PF13478 XdhC_C: XdhC Rossmann 80.5 6.1 0.00013 38.2 7.3 77 645-749 1-77 (136)
134 PRK03612 spermidine synthase; 80.4 12 0.00026 44.2 11.2 80 640-727 296-379 (521)
135 PLN03223 Polycystin cation cha 80.3 19 0.00042 46.3 13.1 55 312-368 1360-1425(1634)
136 PRK09291 short chain dehydroge 80.2 10 0.00022 39.3 9.6 80 643-731 3-83 (257)
137 PRK07231 fabG 3-ketoacyl-(acyl 80.1 5.4 0.00012 41.1 7.5 79 642-731 5-91 (251)
138 PF00056 Ldh_1_N: lactate/mala 79.8 15 0.00032 35.6 9.8 100 644-757 2-104 (141)
139 PRK00811 spermidine synthase; 79.6 16 0.00034 39.7 11.0 79 641-727 76-156 (283)
140 cd05211 NAD_bind_Glu_Leu_Phe_V 79.6 9.3 0.0002 39.9 8.9 115 381-527 22-151 (217)
141 PRK08251 short chain dehydroge 79.5 8.2 0.00018 39.9 8.6 81 383-469 3-90 (248)
142 PRK07523 gluconate 5-dehydroge 79.3 12 0.00026 38.9 9.8 79 642-731 10-97 (255)
143 PLN02989 cinnamyl-alcohol dehy 79.2 17 0.00037 39.4 11.3 81 642-731 5-87 (325)
144 PRK07060 short chain dehydroge 79.2 10 0.00022 38.9 9.2 76 642-731 9-87 (245)
145 PRK06194 hypothetical protein; 79.1 8.2 0.00018 40.9 8.6 81 382-470 6-93 (287)
146 PLN02650 dihydroflavonol-4-red 79.0 14 0.0003 40.7 10.7 106 642-756 5-116 (351)
147 PRK07831 short chain dehydroge 79.0 19 0.00042 37.6 11.3 83 642-731 17-107 (262)
148 PLN03209 translocon at the inn 79.0 8.8 0.00019 45.7 9.4 83 381-470 79-169 (576)
149 PRK07806 short chain dehydroge 78.9 12 0.00025 38.7 9.5 107 642-756 6-122 (248)
150 PLN02780 ketoreductase/ oxidor 78.9 15 0.00034 40.2 10.9 61 382-448 53-114 (320)
151 PRK08265 short chain dehydroge 78.9 8.6 0.00019 40.4 8.6 77 382-469 6-89 (261)
152 PRK09291 short chain dehydroge 78.8 12 0.00026 38.8 9.6 79 383-469 3-82 (257)
153 PRK01438 murD UDP-N-acetylmura 78.6 4 8.8E-05 47.3 6.5 70 641-730 15-87 (480)
154 PRK04148 hypothetical protein; 78.4 4.9 0.00011 38.8 5.9 71 382-470 17-87 (134)
155 PLN02662 cinnamyl-alcohol dehy 78.3 9.2 0.0002 41.2 8.9 80 643-731 5-86 (322)
156 PLN02427 UDP-apiose/xylose syn 78.3 7.7 0.00017 43.4 8.5 83 640-730 12-95 (386)
157 PRK15181 Vi polysaccharide bio 78.2 8.5 0.00019 42.5 8.7 83 642-731 15-100 (348)
158 PRK12744 short chain dehydroge 78.2 8.3 0.00018 40.2 8.2 109 642-757 8-134 (257)
159 PRK06197 short chain dehydroge 78.1 21 0.00045 38.5 11.5 83 641-730 15-104 (306)
160 PRK06196 oxidoreductase; Provi 77.9 10 0.00023 41.1 9.1 76 642-730 26-108 (315)
161 PRK06914 short chain dehydroge 77.8 13 0.00029 39.1 9.7 82 643-731 4-91 (280)
162 PRK07831 short chain dehydroge 77.8 9.4 0.0002 40.0 8.5 82 382-469 17-106 (262)
163 PRK08267 short chain dehydroge 77.7 9.2 0.0002 39.9 8.4 78 383-470 2-87 (260)
164 PRK06138 short chain dehydroge 77.7 9.7 0.00021 39.3 8.5 80 382-470 5-91 (252)
165 PF00106 adh_short: short chai 77.7 8.1 0.00018 37.1 7.4 83 643-731 1-90 (167)
166 PLN02896 cinnamyl-alcohol dehy 77.7 11 0.00024 41.5 9.5 81 380-470 8-89 (353)
167 PF01408 GFO_IDH_MocA: Oxidore 77.7 19 0.00042 32.8 9.6 71 384-470 2-72 (120)
168 PRK07326 short chain dehydroge 77.4 10 0.00022 38.8 8.4 80 382-470 6-92 (237)
169 PRK08643 acetoin reductase; Va 77.4 14 0.0003 38.4 9.6 80 643-731 3-89 (256)
170 PRK12829 short chain dehydroge 77.3 10 0.00022 39.4 8.6 80 381-470 10-96 (264)
171 PRK13394 3-hydroxybutyrate deh 77.3 19 0.0004 37.4 10.5 79 642-731 7-94 (262)
172 PRK06181 short chain dehydroge 77.2 19 0.00041 37.6 10.6 77 643-730 2-87 (263)
173 PRK07024 short chain dehydroge 77.2 9.6 0.00021 39.8 8.3 79 382-469 2-87 (257)
174 PRK12824 acetoacetyl-CoA reduc 77.2 25 0.00053 36.0 11.3 81 643-731 3-90 (245)
175 PRK10538 malonic semialdehyde 77.1 9.6 0.00021 39.6 8.3 76 383-469 1-83 (248)
176 PLN02896 cinnamyl-alcohol dehy 77.1 9 0.0002 42.3 8.5 78 642-731 10-89 (353)
177 PRK07454 short chain dehydroge 77.1 14 0.00031 37.9 9.5 81 642-731 6-93 (241)
178 PRK09242 tropinone reductase; 77.0 20 0.00042 37.4 10.6 83 642-731 9-98 (257)
179 cd01065 NAD_bind_Shikimate_DH 76.9 9.2 0.0002 36.7 7.5 73 382-470 19-91 (155)
180 PRK05866 short chain dehydroge 76.9 13 0.00027 40.2 9.3 81 642-731 40-127 (293)
181 PRK12825 fabG 3-ketoacyl-(acyl 76.8 16 0.00035 37.2 9.8 80 643-730 7-93 (249)
182 PRK05993 short chain dehydroge 76.8 12 0.00026 39.8 9.0 74 642-730 4-85 (277)
183 PLN02695 GDP-D-mannose-3',5'-e 76.8 12 0.00026 42.0 9.4 74 641-730 20-94 (370)
184 PF00056 Ldh_1_N: lactate/mala 76.6 17 0.00037 35.1 9.2 76 383-470 1-79 (141)
185 PRK06522 2-dehydropantoate 2-r 76.5 23 0.0005 38.0 11.3 72 383-470 1-76 (304)
186 PRK06138 short chain dehydroge 76.5 23 0.00051 36.4 11.0 80 642-731 5-91 (252)
187 PRK05854 short chain dehydroge 76.5 10 0.00023 41.3 8.6 82 382-469 14-102 (313)
188 COG0771 MurD UDP-N-acetylmuram 76.5 5.3 0.00012 46.1 6.5 36 642-680 7-42 (448)
189 PRK07231 fabG 3-ketoacyl-(acyl 76.5 11 0.00023 38.8 8.4 80 382-470 5-91 (251)
190 PRK06101 short chain dehydroge 76.3 8.9 0.00019 39.7 7.7 62 383-456 2-64 (240)
191 PRK12429 3-hydroxybutyrate deh 76.2 9.7 0.00021 39.3 8.0 80 643-731 5-91 (258)
192 PF02386 TrkH: Cation transpor 76.1 4.8 0.0001 44.9 6.0 69 289-357 269-346 (354)
193 PRK08309 short chain dehydroge 76.0 12 0.00026 37.7 8.3 65 383-456 1-65 (177)
194 cd01485 E1-1_like Ubiquitin ac 75.9 10 0.00022 38.9 7.8 33 642-677 19-52 (198)
195 PRK06940 short chain dehydroge 75.9 9.4 0.0002 40.6 8.0 80 382-470 2-86 (275)
196 PF02558 ApbA: Ketopantoate re 75.9 3.7 8E-05 39.4 4.4 75 645-730 1-76 (151)
197 PRK08219 short chain dehydroge 75.8 17 0.00036 36.8 9.5 75 643-731 4-81 (227)
198 PRK07454 short chain dehydroge 75.8 13 0.00027 38.3 8.7 79 383-469 7-92 (241)
199 PRK13940 glutamyl-tRNA reducta 75.8 5.1 0.00011 45.9 6.2 42 642-688 181-223 (414)
200 TIGR02356 adenyl_thiF thiazole 75.7 7 0.00015 40.1 6.7 83 641-730 20-120 (202)
201 PRK04457 spermidine synthase; 75.7 13 0.00029 39.7 9.0 78 640-727 65-142 (262)
202 PRK06482 short chain dehydroge 75.7 18 0.00039 38.2 10.0 77 643-731 3-86 (276)
203 PRK10637 cysG siroheme synthas 75.6 24 0.00052 40.9 11.7 86 381-490 11-96 (457)
204 PRK08264 short chain dehydroge 75.5 21 0.00045 36.6 10.2 74 642-731 6-83 (238)
205 PRK06949 short chain dehydroge 75.4 14 0.0003 38.3 9.0 81 381-469 8-95 (258)
206 PRK00045 hemA glutamyl-tRNA re 75.4 4.7 0.0001 46.2 5.8 43 641-688 181-224 (423)
207 PRK07666 fabG 3-ketoacyl-(acyl 75.4 14 0.00029 38.0 8.8 81 382-470 7-94 (239)
208 PRK12826 3-ketoacyl-(acyl-carr 75.3 19 0.0004 37.0 9.8 79 642-731 6-93 (251)
209 PRK07062 short chain dehydroge 75.3 12 0.00027 39.0 8.6 82 382-469 8-96 (265)
210 PRK08213 gluconate 5-dehydroge 75.2 16 0.00034 38.1 9.3 81 642-731 12-99 (259)
211 PRK11749 dihydropyrimidine deh 75.1 4 8.7E-05 47.1 5.2 36 639-677 137-172 (457)
212 PRK11908 NAD-dependent epimera 75.1 12 0.00027 41.0 8.9 73 643-729 2-76 (347)
213 TIGR01035 hemA glutamyl-tRNA r 75.0 4.4 9.5E-05 46.4 5.4 43 641-688 179-222 (417)
214 PRK08251 short chain dehydroge 74.8 24 0.00051 36.4 10.5 81 643-730 3-90 (248)
215 PRK07063 short chain dehydroge 74.7 13 0.00028 38.7 8.6 82 382-469 7-95 (260)
216 PRK11908 NAD-dependent epimera 74.7 9.6 0.00021 41.9 7.9 73 383-468 2-76 (347)
217 PRK06924 short chain dehydroge 74.7 7.9 0.00017 40.0 6.8 63 643-716 2-65 (251)
218 PRK07102 short chain dehydroge 74.6 15 0.00032 38.0 8.8 80 643-730 2-85 (243)
219 PLN02427 UDP-apiose/xylose syn 74.5 10 0.00022 42.5 8.1 82 381-469 13-95 (386)
220 COG0300 DltE Short-chain dehyd 74.2 13 0.00027 40.2 8.2 81 640-731 4-94 (265)
221 TIGR02415 23BDH acetoin reduct 74.2 17 0.00038 37.5 9.3 80 643-731 1-87 (254)
222 PRK08219 short chain dehydroge 74.1 11 0.00025 38.0 7.8 75 383-470 4-81 (227)
223 PRK08594 enoyl-(acyl carrier p 74.1 9 0.0002 40.3 7.2 80 642-730 7-96 (257)
224 PLN02650 dihydroflavonol-4-red 74.1 13 0.00029 40.9 8.8 82 382-470 5-87 (351)
225 PRK05993 short chain dehydroge 74.1 10 0.00023 40.2 7.7 74 382-469 4-85 (277)
226 TIGR02853 spore_dpaA dipicolin 73.8 5.9 0.00013 43.1 5.8 34 642-678 151-184 (287)
227 PF00106 adh_short: short chai 73.6 13 0.00028 35.8 7.6 81 383-470 1-90 (167)
228 PRK05565 fabG 3-ketoacyl-(acyl 73.3 15 0.00032 37.7 8.4 81 382-470 5-93 (247)
229 PRK06125 short chain dehydroge 73.3 20 0.00042 37.5 9.5 82 642-731 7-91 (259)
230 KOG1371 UDP-glucose 4-epimeras 73.3 19 0.00041 39.8 9.3 104 642-756 2-117 (343)
231 PRK06200 2,3-dihydroxy-2,3-dih 73.3 13 0.00028 38.9 8.2 77 382-469 6-89 (263)
232 PRK07677 short chain dehydroge 73.2 30 0.00066 35.8 10.9 79 643-730 2-87 (252)
233 TIGR03589 PseB UDP-N-acetylglu 73.2 18 0.00038 39.7 9.4 79 383-470 5-84 (324)
234 PRK08643 acetoin reductase; Va 73.2 15 0.00032 38.2 8.4 79 383-469 3-88 (256)
235 PRK08340 glucose-1-dehydrogena 73.0 13 0.00028 38.8 8.1 78 383-469 1-85 (259)
236 TIGR03649 ergot_EASG ergot alk 72.9 12 0.00025 39.9 7.7 69 385-470 2-77 (285)
237 PRK07067 sorbitol dehydrogenas 72.8 15 0.00032 38.3 8.4 77 382-469 6-89 (257)
238 PRK07062 short chain dehydroge 72.8 36 0.00078 35.5 11.4 83 642-731 8-97 (265)
239 PRK06949 short chain dehydroge 72.8 11 0.00025 39.0 7.5 81 642-731 9-96 (258)
240 PRK10538 malonic semialdehyde 72.8 27 0.00059 36.2 10.4 75 644-730 2-83 (248)
241 PRK12939 short chain dehydroge 72.7 18 0.00039 37.2 8.9 81 382-470 7-94 (250)
242 PRK12939 short chain dehydroge 72.6 31 0.00067 35.4 10.7 81 642-731 7-94 (250)
243 PRK05476 S-adenosyl-L-homocyst 72.5 6.3 0.00014 45.3 5.9 35 641-678 211-245 (425)
244 PRK07523 gluconate 5-dehydroge 72.5 16 0.00034 38.0 8.5 81 382-470 10-97 (255)
245 PRK00536 speE spermidine synth 72.4 33 0.0007 37.0 10.9 74 380-468 71-147 (262)
246 PRK10217 dTDP-glucose 4,6-dehy 72.4 11 0.00025 41.3 7.8 105 643-756 2-114 (355)
247 PRK05557 fabG 3-ketoacyl-(acyl 72.3 29 0.00063 35.3 10.3 81 643-731 6-93 (248)
248 PF01210 NAD_Gly3P_dh_N: NAD-d 72.3 6.5 0.00014 38.6 5.2 77 384-470 1-79 (157)
249 PF00899 ThiF: ThiF family; I 72.3 48 0.001 31.4 11.0 82 382-470 2-102 (135)
250 PRK06482 short chain dehydroge 72.2 15 0.00032 38.8 8.3 78 382-470 2-86 (276)
251 TIGR01318 gltD_gamma_fam gluta 72.1 6.2 0.00013 45.8 5.8 36 640-678 139-174 (467)
252 PRK06182 short chain dehydroge 72.1 19 0.0004 38.0 9.1 75 642-731 3-84 (273)
253 PRK08017 oxidoreductase; Provi 72.1 13 0.00027 38.6 7.6 59 383-455 3-62 (256)
254 KOG1014 17 beta-hydroxysteroid 72.1 38 0.00082 37.3 11.2 44 381-430 48-92 (312)
255 PRK12429 3-hydroxybutyrate deh 72.0 17 0.00036 37.6 8.5 80 383-470 5-91 (258)
256 PLN02989 cinnamyl-alcohol dehy 72.0 15 0.00032 39.8 8.5 82 382-470 5-87 (325)
257 PRK10750 potassium transporter 72.0 74 0.0016 37.4 14.5 70 289-359 398-475 (483)
258 PRK06172 short chain dehydroge 72.0 17 0.00036 37.7 8.5 80 382-469 7-93 (253)
259 PRK08063 enoyl-(acyl carrier p 71.9 24 0.00051 36.4 9.6 81 643-731 5-92 (250)
260 PRK12384 sorbitol-6-phosphate 71.7 17 0.00036 37.9 8.5 81 383-469 3-90 (259)
261 PRK12826 3-ketoacyl-(acyl-carr 71.6 18 0.00038 37.2 8.5 81 382-470 6-93 (251)
262 PRK08265 short chain dehydroge 71.5 9.8 0.00021 40.0 6.7 77 642-730 6-89 (261)
263 PRK08217 fabG 3-ketoacyl-(acyl 71.5 16 0.00036 37.4 8.3 80 642-730 5-91 (253)
264 PLN02653 GDP-mannose 4,6-dehyd 71.4 15 0.00033 40.2 8.4 83 642-731 6-93 (340)
265 PRK08993 2-deoxy-D-gluconate 3 71.3 25 0.00054 36.6 9.7 78 642-730 10-94 (253)
266 PRK07825 short chain dehydroge 71.3 24 0.00051 37.2 9.6 75 643-730 6-87 (273)
267 PF03807 F420_oxidored: NADP o 71.3 6.7 0.00015 34.6 4.6 40 644-688 1-44 (96)
268 PRK05872 short chain dehydroge 71.2 28 0.00061 37.4 10.3 79 642-731 9-95 (296)
269 PRK12828 short chain dehydroge 71.2 7.8 0.00017 39.4 5.7 76 642-730 7-91 (239)
270 PRK06180 short chain dehydroge 71.2 20 0.00043 38.0 9.1 78 642-731 4-88 (277)
271 PRK06197 short chain dehydroge 71.2 15 0.00033 39.6 8.2 82 382-469 16-104 (306)
272 PRK06522 2-dehydropantoate 2-r 71.1 9.1 0.0002 41.1 6.5 42 644-690 2-43 (304)
273 PRK06500 short chain dehydroge 71.1 19 0.0004 37.1 8.6 77 382-469 6-89 (249)
274 cd01338 MDH_choloroplast_like 71.0 12 0.00025 41.5 7.4 104 642-758 2-114 (322)
275 PRK07666 fabG 3-ketoacyl-(acyl 71.0 18 0.0004 37.0 8.5 81 642-731 7-94 (239)
276 PRK06101 short chain dehydroge 70.9 8.6 0.00019 39.8 6.0 75 643-730 2-80 (240)
277 PRK08306 dipicolinate synthase 70.9 8.7 0.00019 42.0 6.3 34 642-678 152-185 (296)
278 TIGR03649 ergot_EASG ergot alk 70.9 8.7 0.00019 40.9 6.2 69 644-730 1-76 (285)
279 KOG4440 NMDA selective glutama 70.9 4.7 0.0001 47.4 4.2 54 312-365 612-666 (993)
280 PRK09242 tropinone reductase; 70.8 18 0.0004 37.5 8.6 81 383-469 10-97 (257)
281 TIGR01963 PHB_DH 3-hydroxybuty 70.6 28 0.0006 35.8 9.8 80 643-731 2-88 (255)
282 PRK07097 gluconate 5-dehydroge 70.6 18 0.00039 37.9 8.5 81 382-470 10-97 (265)
283 PRK05653 fabG 3-ketoacyl-(acyl 70.6 16 0.00034 37.2 7.9 80 643-731 6-92 (246)
284 PRK06124 gluconate 5-dehydroge 70.6 19 0.00041 37.4 8.5 80 382-469 11-97 (256)
285 PLN02662 cinnamyl-alcohol dehy 70.5 14 0.0003 39.9 7.7 81 383-470 5-86 (322)
286 TIGR00933 2a38 potassium uptak 70.5 28 0.0006 39.5 10.4 40 296-335 111-150 (390)
287 PRK12481 2-deoxy-D-gluconate 3 70.4 11 0.00024 39.3 6.8 78 642-730 8-92 (251)
288 PRK05866 short chain dehydroge 70.4 17 0.00038 39.1 8.5 81 382-470 40-127 (293)
289 PRK06182 short chain dehydroge 70.4 15 0.00032 38.8 7.8 75 382-470 3-84 (273)
290 PRK06179 short chain dehydroge 70.4 29 0.00062 36.4 10.0 72 643-731 5-83 (270)
291 PRK05875 short chain dehydroge 70.2 21 0.00045 37.6 8.9 82 382-469 7-95 (276)
292 PRK07063 short chain dehydroge 70.2 25 0.00054 36.6 9.4 83 642-731 7-96 (260)
293 COG1893 ApbA Ketopantoate redu 70.2 11 0.00024 41.4 6.9 73 644-730 2-76 (307)
294 TIGR02356 adenyl_thiF thiazole 70.2 58 0.0013 33.4 11.9 35 381-420 20-54 (202)
295 PRK06924 short chain dehydroge 70.1 15 0.00033 37.9 7.7 63 383-456 2-66 (251)
296 TIGR01316 gltA glutamate synth 70.1 6.2 0.00013 45.5 5.2 34 641-677 132-165 (449)
297 PF10727 Rossmann-like: Rossma 70.1 11 0.00023 36.1 5.9 71 641-732 9-79 (127)
298 COG1086 Predicted nucleoside-d 70.1 30 0.00065 41.0 10.5 100 382-486 250-358 (588)
299 PRK06841 short chain dehydroge 69.9 23 0.00051 36.6 9.1 78 642-731 15-99 (255)
300 PRK10675 UDP-galactose-4-epime 69.9 12 0.00027 40.6 7.3 78 644-731 2-83 (338)
301 PLN00203 glutamyl-tRNA reducta 69.9 6.5 0.00014 46.4 5.3 42 642-688 266-308 (519)
302 PLN02214 cinnamoyl-CoA reducta 69.9 41 0.0009 37.1 11.5 80 382-470 10-91 (342)
303 TIGR03466 HpnA hopanoid-associ 69.8 9.9 0.00022 40.8 6.5 72 384-470 2-74 (328)
304 COG0654 UbiH 2-polyprenyl-6-me 69.8 6.7 0.00015 44.1 5.3 32 643-677 3-34 (387)
305 PLN02986 cinnamyl-alcohol dehy 69.8 15 0.00032 39.8 7.9 105 642-755 5-115 (322)
306 PRK07890 short chain dehydroge 69.7 19 0.00041 37.3 8.3 81 382-470 5-92 (258)
307 PRK08213 gluconate 5-dehydroge 69.6 20 0.00044 37.3 8.5 81 382-470 12-99 (259)
308 PRK07102 short chain dehydroge 69.6 19 0.0004 37.2 8.2 80 383-469 2-85 (243)
309 PRK09186 flagellin modificatio 69.6 9.2 0.0002 39.6 5.9 82 642-730 4-92 (256)
310 PRK07067 sorbitol dehydrogenas 69.5 25 0.00053 36.6 9.2 78 642-731 6-90 (257)
311 PF00060 Lig_chan: Ligand-gate 69.4 2.5 5.4E-05 40.2 1.5 54 314-367 45-98 (148)
312 TIGR00417 speE spermidine synt 69.1 45 0.00098 35.7 11.2 79 641-728 72-152 (270)
313 PRK07576 short chain dehydroge 69.1 19 0.00042 37.9 8.3 79 382-468 9-94 (264)
314 PRK05650 short chain dehydroge 69.1 19 0.00042 37.8 8.3 79 384-470 2-87 (270)
315 cd00757 ThiF_MoeB_HesA_family 69.1 11 0.00025 39.3 6.4 80 641-731 20-121 (228)
316 PRK07775 short chain dehydroge 69.0 30 0.00065 36.6 9.8 81 642-731 10-97 (274)
317 PRK05867 short chain dehydroge 69.0 21 0.00046 37.0 8.5 80 382-469 9-95 (253)
318 PRK05653 fabG 3-ketoacyl-(acyl 68.9 21 0.00046 36.3 8.4 80 383-470 6-92 (246)
319 PRK08017 oxidoreductase; Provi 68.9 10 0.00022 39.2 6.1 73 643-730 3-83 (256)
320 COG1249 Lpd Pyruvate/2-oxoglut 68.8 16 0.00034 42.5 8.1 34 640-676 171-204 (454)
321 PRK05565 fabG 3-ketoacyl-(acyl 68.7 21 0.00045 36.6 8.3 80 643-731 6-93 (247)
322 PRK12771 putative glutamate sy 68.7 17 0.00036 43.3 8.6 35 640-677 135-169 (564)
323 PRK08644 thiamine biosynthesis 68.7 13 0.00028 38.6 6.7 84 641-731 27-127 (212)
324 TIGR00518 alaDH alanine dehydr 68.7 16 0.00034 41.3 7.9 72 382-468 167-238 (370)
325 PRK15116 sulfur acceptor prote 68.6 19 0.00041 38.9 8.1 34 641-677 29-63 (268)
326 COG2985 Predicted permease [Ge 68.5 4.1 8.8E-05 46.9 3.1 57 561-621 211-268 (544)
327 PRK12935 acetoacetyl-CoA reduc 68.5 28 0.00061 35.8 9.3 82 642-731 6-94 (247)
328 PRK05884 short chain dehydroge 68.5 15 0.00032 37.8 7.1 72 384-468 2-77 (223)
329 PRK13394 3-hydroxybutyrate deh 68.4 21 0.00045 37.1 8.3 81 382-470 7-94 (262)
330 PRK08339 short chain dehydroge 68.4 21 0.00046 37.6 8.5 67 383-456 9-76 (263)
331 PLN02240 UDP-glucose 4-epimera 68.2 17 0.00037 39.7 8.0 81 643-730 6-90 (352)
332 PRK07074 short chain dehydroge 68.2 25 0.00054 36.5 8.8 77 384-470 4-87 (257)
333 PRK08085 gluconate 5-dehydroge 68.2 33 0.00072 35.6 9.8 81 642-731 9-96 (254)
334 PRK04148 hypothetical protein; 68.1 11 0.00025 36.3 5.7 55 642-712 17-71 (134)
335 PRK12810 gltD glutamate syntha 68.0 7.2 0.00016 45.3 5.2 35 640-677 141-175 (471)
336 PRK09135 pteridine reductase; 68.0 26 0.00057 35.8 8.9 81 382-469 6-94 (249)
337 COG0169 AroE Shikimate 5-dehyd 68.0 8.9 0.00019 41.7 5.5 43 641-688 125-168 (283)
338 PRK07109 short chain dehydroge 67.8 21 0.00046 39.4 8.6 80 382-469 8-94 (334)
339 PRK05442 malate dehydrogenase; 67.7 16 0.00035 40.5 7.6 108 640-760 2-118 (326)
340 PRK06139 short chain dehydroge 67.7 22 0.00048 39.3 8.7 80 382-469 7-93 (330)
341 PRK07890 short chain dehydroge 67.6 10 0.00022 39.3 5.8 79 642-731 5-92 (258)
342 PRK07576 short chain dehydroge 67.6 36 0.00079 35.7 10.0 78 642-730 9-95 (264)
343 cd01484 E1-2_like Ubiquitin ac 67.4 13 0.00029 39.3 6.5 85 644-731 1-101 (234)
344 PLN02657 3,8-divinyl protochlo 67.4 12 0.00026 42.3 6.7 80 382-469 60-145 (390)
345 PRK06181 short chain dehydroge 67.3 23 0.00049 36.9 8.4 80 383-470 2-88 (263)
346 PRK07424 bifunctional sterol d 67.3 26 0.00057 40.1 9.4 76 642-730 178-254 (406)
347 PRK05717 oxidoreductase; Valid 67.3 26 0.00057 36.4 8.8 78 382-470 10-94 (255)
348 PRK06019 phosphoribosylaminoim 67.3 11 0.00024 42.3 6.4 65 643-725 3-67 (372)
349 PRK12548 shikimate 5-dehydroge 67.3 20 0.00043 38.9 8.1 81 642-730 126-208 (289)
350 cd05291 HicDH_like L-2-hydroxy 67.3 8.4 0.00018 42.1 5.2 75 384-470 2-78 (306)
351 PRK06196 oxidoreductase; Provi 67.3 21 0.00045 38.7 8.4 75 383-469 27-108 (315)
352 PRK09072 short chain dehydroge 67.2 23 0.00051 37.0 8.5 80 382-470 5-90 (263)
353 PRK05867 short chain dehydroge 67.2 26 0.00056 36.4 8.7 80 642-730 9-95 (253)
354 PRK07424 bifunctional sterol d 67.2 53 0.0012 37.6 11.8 77 382-470 178-255 (406)
355 PRK12742 oxidoreductase; Provi 67.1 48 0.001 33.8 10.6 77 642-731 6-85 (237)
356 PRK08339 short chain dehydroge 67.1 25 0.00055 37.0 8.7 81 642-730 8-94 (263)
357 PRK09072 short chain dehydroge 67.1 31 0.00066 36.1 9.3 80 642-731 5-90 (263)
358 PRK06953 short chain dehydroge 67.0 23 0.0005 36.1 8.1 74 643-731 2-80 (222)
359 PRK05650 short chain dehydroge 67.0 33 0.00071 36.0 9.6 79 644-731 2-87 (270)
360 KOG1201 Hydroxysteroid 17-beta 67.0 57 0.0012 35.7 11.2 66 381-455 37-103 (300)
361 PRK05884 short chain dehydroge 67.0 11 0.00023 38.8 5.8 73 644-730 2-78 (223)
362 PRK07774 short chain dehydroge 66.9 26 0.00057 36.1 8.6 80 382-469 6-92 (250)
363 PRK06500 short chain dehydroge 66.7 38 0.00082 34.8 9.8 78 642-731 6-90 (249)
364 PRK05876 short chain dehydroge 66.7 25 0.00055 37.4 8.7 79 383-469 7-92 (275)
365 TIGR01421 gluta_reduc_1 glutat 66.7 12 0.00025 43.3 6.5 33 642-677 166-198 (450)
366 PRK12746 short chain dehydroge 66.6 58 0.0013 33.6 11.2 82 642-731 6-100 (254)
367 COG2910 Putative NADH-flavin r 66.5 18 0.0004 37.0 6.9 70 644-731 2-72 (211)
368 PRK06172 short chain dehydroge 66.4 19 0.00041 37.3 7.6 81 642-731 7-94 (253)
369 PRK07097 gluconate 5-dehydroge 66.4 53 0.0012 34.3 11.0 81 642-731 10-97 (265)
370 PRK07904 short chain dehydroge 66.4 15 0.00032 38.6 6.7 81 641-730 7-96 (253)
371 PRK00094 gpsA NAD(P)H-dependen 66.4 10 0.00022 41.3 5.6 40 644-688 3-42 (325)
372 PRK06935 2-deoxy-D-gluconate 3 66.2 43 0.00093 34.8 10.2 79 642-731 15-101 (258)
373 PF08659 KR: KR domain; Inter 66.2 41 0.0009 33.5 9.6 98 645-752 3-112 (181)
374 PF07991 IlvN: Acetohydroxy ac 66.1 6.2 0.00014 39.4 3.5 67 642-731 4-70 (165)
375 cd01487 E1_ThiF_like E1_ThiF_l 66.0 18 0.0004 36.2 7.0 31 644-677 1-32 (174)
376 PRK06179 short chain dehydroge 65.9 12 0.00027 39.2 6.1 73 382-470 4-83 (270)
377 PRK07814 short chain dehydroge 65.9 31 0.00068 36.1 9.1 80 642-730 10-96 (263)
378 PF07991 IlvN: Acetohydroxy ac 65.9 8.3 0.00018 38.5 4.3 66 382-470 4-70 (165)
379 PRK06180 short chain dehydroge 65.8 23 0.00049 37.6 8.1 77 383-470 5-88 (277)
380 PRK07825 short chain dehydroge 65.8 22 0.00048 37.4 8.0 75 383-469 6-87 (273)
381 TIGR03325 BphB_TodD cis-2,3-di 65.7 25 0.00053 36.8 8.3 77 382-469 5-88 (262)
382 PRK12779 putative bifunctional 65.6 10 0.00023 47.9 6.2 34 641-677 305-338 (944)
383 PRK12936 3-ketoacyl-(acyl-carr 65.6 39 0.00085 34.5 9.6 78 382-470 6-90 (245)
384 PRK05717 oxidoreductase; Valid 65.5 18 0.00038 37.7 7.1 79 641-731 9-94 (255)
385 PRK08263 short chain dehydroge 65.5 51 0.0011 34.7 10.7 77 643-731 4-87 (275)
386 PRK07251 pyridine nucleotide-d 65.2 13 0.00029 42.4 6.6 33 641-676 156-188 (438)
387 PRK08217 fabG 3-ketoacyl-(acyl 65.2 28 0.0006 35.8 8.4 80 382-469 5-91 (253)
388 PRK05693 short chain dehydroge 65.1 40 0.00087 35.5 9.8 95 643-752 2-103 (274)
389 PRK10084 dTDP-glucose 4,6 dehy 65.0 26 0.00056 38.4 8.6 104 644-756 2-113 (352)
390 PRK09853 putative selenate red 65.0 9.6 0.00021 48.3 5.7 35 640-677 537-571 (1019)
391 PRK00066 ldh L-lactate dehydro 64.8 29 0.00064 38.2 8.9 102 640-756 4-107 (315)
392 PRK07889 enoyl-(acyl carrier p 64.7 15 0.00033 38.5 6.5 79 642-730 7-94 (256)
393 cd01336 MDH_cytoplasmic_cytoso 64.6 17 0.00036 40.4 7.0 107 642-757 2-113 (325)
394 PRK13302 putative L-aspartate 64.6 13 0.00027 40.2 5.8 45 642-688 6-50 (271)
395 PRK09135 pteridine reductase; 64.6 34 0.00074 35.0 8.9 82 643-731 7-95 (249)
396 PLN02260 probable rhamnose bio 64.5 21 0.00045 43.3 8.4 83 642-731 6-90 (668)
397 PRK12748 3-ketoacyl-(acyl-carr 64.5 52 0.0011 34.2 10.4 81 643-730 6-104 (256)
398 PRK12921 2-dehydropantoate 2-r 64.5 20 0.00043 38.6 7.5 41 644-690 2-42 (305)
399 PRK07478 short chain dehydroge 64.5 29 0.00063 36.0 8.5 79 383-469 7-92 (254)
400 PRK06940 short chain dehydroge 64.4 11 0.00024 40.0 5.4 104 643-756 3-113 (275)
401 PRK05482 potassium-transportin 64.4 19 0.00042 42.6 7.6 70 290-359 418-501 (559)
402 PRK12778 putative bifunctional 64.3 11 0.00023 46.6 5.9 35 640-677 429-463 (752)
403 PLN02366 spermidine synthase 64.3 68 0.0015 35.3 11.6 82 381-470 91-175 (308)
404 PLN02986 cinnamyl-alcohol dehy 64.2 27 0.00059 37.8 8.5 82 382-470 5-87 (322)
405 PRK12938 acetyacetyl-CoA reduc 64.2 17 0.00037 37.4 6.6 81 643-731 4-91 (246)
406 PF02826 2-Hacid_dh_C: D-isome 64.2 11 0.00024 37.7 5.0 38 640-680 34-71 (178)
407 PRK06057 short chain dehydroge 64.2 15 0.00033 38.2 6.3 76 642-731 7-89 (255)
408 TIGR01181 dTDP_gluc_dehyt dTDP 64.2 18 0.00039 38.5 7.0 78 384-470 1-83 (317)
409 PRK06079 enoyl-(acyl carrier p 64.1 17 0.00036 38.1 6.6 77 642-730 7-92 (252)
410 PRK12827 short chain dehydroge 64.1 48 0.001 33.8 10.0 82 643-731 7-97 (249)
411 TIGR02853 spore_dpaA dipicolin 64.1 75 0.0016 34.6 11.8 123 382-536 151-281 (287)
412 cd05293 LDH_1 A subgroup of L- 64.0 49 0.0011 36.5 10.4 101 642-757 3-106 (312)
413 PTZ00075 Adenosylhomocysteinas 63.8 17 0.00037 42.3 7.0 35 641-678 253-287 (476)
414 PRK06200 2,3-dihydroxy-2,3-dih 63.7 15 0.00033 38.4 6.3 77 642-730 6-89 (263)
415 PRK06567 putative bifunctional 63.7 27 0.00059 44.2 9.1 35 640-677 381-415 (1028)
416 PRK12828 short chain dehydroge 63.6 26 0.00055 35.6 7.7 77 383-469 8-91 (239)
417 TIGR03206 benzo_BadH 2-hydroxy 63.6 32 0.0007 35.3 8.6 80 382-469 3-89 (250)
418 PRK08159 enoyl-(acyl carrier p 63.5 17 0.00038 38.6 6.7 78 642-730 10-97 (272)
419 PRK12745 3-ketoacyl-(acyl-carr 63.5 17 0.00036 37.6 6.5 81 643-731 3-90 (256)
420 PRK05875 short chain dehydroge 63.5 13 0.00028 39.2 5.7 81 642-730 7-95 (276)
421 PRK07201 short chain dehydroge 63.4 31 0.00068 41.4 9.6 78 644-730 2-86 (657)
422 PLN02583 cinnamoyl-CoA reducta 63.3 35 0.00077 36.7 9.1 78 382-468 6-86 (297)
423 PRK07364 2-octaprenyl-6-methox 63.3 9.6 0.00021 42.9 4.9 35 641-678 17-51 (415)
424 PRK07814 short chain dehydroge 63.3 32 0.00068 36.1 8.6 80 382-469 10-96 (263)
425 TIGR03315 Se_ygfK putative sel 63.3 15 0.00033 46.7 7.0 34 641-677 536-569 (1012)
426 TIGR02622 CDP_4_6_dhtase CDP-g 63.2 23 0.00049 39.0 7.8 79 643-731 5-85 (349)
427 PRK08177 short chain dehydroge 63.1 17 0.00037 37.1 6.3 74 643-730 2-80 (225)
428 TIGR02415 23BDH acetoin reduct 63.0 31 0.00067 35.6 8.4 78 384-469 2-86 (254)
429 TIGR03206 benzo_BadH 2-hydroxy 63.0 49 0.0011 33.9 9.8 81 642-731 3-90 (250)
430 PRK06124 gluconate 5-dehydroge 63.0 21 0.00045 37.0 7.1 80 641-731 10-98 (256)
431 PRK08125 bifunctional UDP-gluc 63.0 17 0.00036 44.2 7.1 78 380-469 313-391 (660)
432 PRK07453 protochlorophyllide o 62.8 34 0.00073 37.2 8.9 80 382-469 6-92 (322)
433 PRK06139 short chain dehydroge 62.8 35 0.00076 37.7 9.1 81 642-731 7-94 (330)
434 PRK06701 short chain dehydroge 62.8 38 0.00082 36.4 9.2 79 642-731 46-134 (290)
435 PRK07060 short chain dehydroge 62.7 24 0.00053 36.1 7.5 76 382-470 9-87 (245)
436 PRK07904 short chain dehydroge 62.6 26 0.00057 36.7 7.8 82 382-469 8-96 (253)
437 cd01075 NAD_bind_Leu_Phe_Val_D 62.6 11 0.00023 38.8 4.6 43 641-688 27-69 (200)
438 PF03446 NAD_binding_2: NAD bi 62.5 80 0.0017 30.9 10.8 93 383-506 2-97 (163)
439 cd01483 E1_enzyme_family Super 62.5 96 0.0021 29.5 11.1 32 384-420 1-32 (143)
440 COG0373 HemA Glutamyl-tRNA red 62.5 26 0.00056 40.2 8.0 71 382-470 178-248 (414)
441 TIGR01500 sepiapter_red sepiap 62.4 28 0.0006 36.3 7.9 71 384-456 2-73 (256)
442 PRK07856 short chain dehydroge 62.4 39 0.00085 35.0 9.0 72 642-730 6-84 (252)
443 PRK09134 short chain dehydroge 62.3 75 0.0016 33.0 11.2 82 641-730 8-96 (258)
444 PRK12814 putative NADPH-depend 62.2 10 0.00023 45.9 5.2 36 640-678 191-226 (652)
445 COG0421 SpeE Spermidine syntha 62.2 24 0.00052 38.4 7.4 78 383-470 78-159 (282)
446 PRK07041 short chain dehydroge 62.1 42 0.0009 34.1 9.0 75 646-731 1-79 (230)
447 PLN02253 xanthoxin dehydrogena 62.1 33 0.00072 36.2 8.5 79 382-469 18-103 (280)
448 TIGR01142 purT phosphoribosylg 62.0 15 0.00032 41.0 6.1 70 644-730 1-71 (380)
449 PRK13512 coenzyme A disulfide 62.0 15 0.00032 42.2 6.1 34 641-677 147-180 (438)
450 PRK08085 gluconate 5-dehydroge 62.0 35 0.00076 35.4 8.5 80 382-469 9-95 (254)
451 TIGR01317 GOGAT_sm_gam glutama 61.8 11 0.00023 44.2 5.0 34 641-677 142-175 (485)
452 TIGR01963 PHB_DH 3-hydroxybuty 61.8 32 0.00068 35.4 8.1 78 384-469 3-87 (255)
453 PRK08264 short chain dehydroge 61.7 30 0.00065 35.4 7.9 74 382-470 6-83 (238)
454 PF01494 FAD_binding_3: FAD bi 61.7 9.8 0.00021 41.0 4.4 32 644-678 3-34 (356)
455 PRK08226 short chain dehydroge 61.6 46 0.001 34.6 9.4 78 642-730 6-91 (263)
456 PRK11064 wecC UDP-N-acetyl-D-m 61.6 42 0.00091 38.5 9.7 101 643-756 4-107 (415)
457 PRK07417 arogenate dehydrogena 61.5 18 0.0004 38.8 6.5 66 384-470 2-67 (279)
458 cd01080 NAD_bind_m-THF_DH_Cycl 61.3 21 0.00046 35.7 6.4 45 640-688 42-87 (168)
459 PRK05876 short chain dehydroge 61.3 61 0.0013 34.5 10.4 81 642-731 6-93 (275)
460 PLN00106 malate dehydrogenase 61.3 48 0.001 36.8 9.8 104 641-757 17-121 (323)
461 PF01408 GFO_IDH_MocA: Oxidore 61.2 29 0.00063 31.6 6.9 71 644-731 2-72 (120)
462 PRK07832 short chain dehydroge 61.1 44 0.00096 35.2 9.2 102 643-752 1-109 (272)
463 PRK08628 short chain dehydroge 61.0 47 0.001 34.5 9.3 100 641-752 6-113 (258)
464 PLN02686 cinnamoyl-CoA reducta 61.0 19 0.00041 40.3 6.7 82 641-729 52-136 (367)
465 PLN02206 UDP-glucuronate decar 60.9 33 0.00071 39.7 8.7 74 641-730 118-192 (442)
466 PRK12809 putative oxidoreducta 60.9 14 0.00031 44.6 6.1 35 641-678 309-343 (639)
467 PRK12769 putative oxidoreducta 60.8 13 0.00029 45.0 5.8 35 640-677 325-359 (654)
468 TIGR01759 MalateDH-SF1 malate 60.8 25 0.00055 38.9 7.5 106 641-759 2-116 (323)
469 PRK08589 short chain dehydroge 60.8 36 0.00077 36.0 8.5 79 382-469 6-91 (272)
470 PRK00811 spermidine synthase; 60.7 84 0.0018 34.0 11.4 81 381-470 76-160 (283)
471 PRK05976 dihydrolipoamide dehy 60.7 17 0.00037 42.0 6.5 33 642-677 180-212 (472)
472 PRK08762 molybdopterin biosynt 60.6 20 0.00043 40.4 6.8 78 641-731 134-235 (376)
473 PRK02705 murD UDP-N-acetylmura 60.6 13 0.00028 42.7 5.5 32 644-678 2-33 (459)
474 PRK07109 short chain dehydroge 60.6 47 0.001 36.6 9.6 80 642-730 8-94 (334)
475 TIGR01423 trypano_reduc trypan 60.4 22 0.00048 41.6 7.3 38 641-678 186-223 (486)
476 PF01073 3Beta_HSD: 3-beta hyd 60.3 13 0.00029 40.1 5.1 69 649-730 5-75 (280)
477 TIGR02354 thiF_fam2 thiamine b 60.3 34 0.00073 35.2 7.8 34 641-677 20-54 (200)
478 PRK12936 3-ketoacyl-(acyl-carr 60.2 64 0.0014 32.9 10.0 78 642-731 6-90 (245)
479 PRK07035 short chain dehydroge 60.2 40 0.00086 34.8 8.6 66 382-455 8-74 (252)
480 PRK12468 flhB flagellar biosyn 60.0 1.7E+02 0.0036 33.5 13.9 52 255-310 114-165 (386)
481 TIGR03385 CoA_CoA_reduc CoA-di 60.0 20 0.00044 40.7 6.8 34 641-677 136-169 (427)
482 PRK12743 oxidoreductase; Provi 60.0 54 0.0012 34.1 9.6 82 642-731 2-90 (256)
483 PRK14727 putative mercuric red 59.9 19 0.00041 41.9 6.6 33 641-676 187-219 (479)
484 PLN02253 xanthoxin dehydrogena 59.8 19 0.00042 38.0 6.2 79 642-731 18-104 (280)
485 PRK01710 murD UDP-N-acetylmura 59.7 18 0.00038 41.9 6.3 34 642-678 14-47 (458)
486 TIGR01809 Shik-DH-AROM shikima 59.6 17 0.00037 39.4 5.8 42 642-688 125-167 (282)
487 TIGR03438 probable methyltrans 59.6 1.2E+02 0.0027 33.0 12.5 121 384-515 66-190 (301)
488 KOG1053 Glutamate-gated NMDA-t 59.5 30 0.00065 42.7 8.0 56 312-367 608-664 (1258)
489 TIGR00507 aroE shikimate 5-deh 59.5 17 0.00036 39.0 5.7 43 641-688 116-158 (270)
490 PRK05854 short chain dehydroge 59.4 25 0.00055 38.2 7.2 82 642-730 14-102 (313)
491 PRK15181 Vi polysaccharide bio 59.4 29 0.00063 38.3 7.8 82 382-470 15-100 (348)
492 PRK07878 molybdopterin biosynt 59.4 42 0.0009 38.2 9.1 85 641-730 41-141 (392)
493 TIGR00872 gnd_rel 6-phosphoglu 59.3 96 0.0021 33.7 11.6 68 384-470 2-69 (298)
494 PRK05599 hypothetical protein; 59.2 32 0.00069 35.8 7.6 65 384-456 2-67 (246)
495 PF00070 Pyr_redox: Pyridine n 59.2 14 0.0003 31.7 4.1 32 384-421 1-32 (80)
496 PRK05865 hypothetical protein; 59.2 34 0.00074 42.9 8.9 90 644-756 2-92 (854)
497 PRK08263 short chain dehydroge 59.1 37 0.00081 35.8 8.3 77 383-470 4-87 (275)
498 cd01485 E1-1_like Ubiquitin ac 59.1 54 0.0012 33.6 9.1 35 381-420 18-52 (198)
499 KOG1208 Dehydrogenases with di 59.1 38 0.00083 37.4 8.5 71 380-456 32-104 (314)
500 PRK07453 protochlorophyllide o 59.1 20 0.00044 39.0 6.4 80 642-730 6-92 (322)
No 1
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.97 E-value=4.2e-30 Score=285.78 Aligned_cols=231 Identities=20% Similarity=0.239 Sum_probs=188.6
Q ss_pred HHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHH-H
Q 004087 293 FATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSD-A 364 (774)
Q Consensus 293 ~~~l~lil~g~~~~~~ie~------~s~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~-~ 364 (774)
+.+..+++.|+++++++++ .++.|||||+++|+||+||||. |.+..||+|+++++++|+++|++.++.++. .
T Consensus 142 ~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 142 ISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777776664 6999999999999999999998 788899999999999999999998887765 5
Q ss_pred HHHHHHhhhcCcc-cccccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEE
Q 004087 365 ISEKVDSLRKGKS-EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICR 443 (774)
Q Consensus 365 i~~~l~~lr~G~~-~v~~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I 443 (774)
+.+++++..+++. ....+||+||||||+.+..++++|.+. +.+|+++|+|+. ++.. ..++.++
T Consensus 222 i~~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d~~--~~~~--------~~g~~vI 285 (393)
T PRK10537 222 IRGNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQR------GQAVTVIVPLGL--EHRL--------PDDADLI 285 (393)
T ss_pred HHHHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHC------CCCEEEEECchh--hhhc--------cCCCcEE
Confidence 5555555433332 234589999999999999999999752 367888887642 2221 2346789
Q ss_pred EeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEec
Q 004087 444 SGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVV 523 (774)
Q Consensus 444 ~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~ 523 (774)
.||++++++|++||+++|+++|+++++ |++|+.+++++|+++| +.+|||++.++++.++++.+|+|. +|+
T Consensus 286 ~GD~td~e~L~~AgI~~A~aVI~~t~d------D~~Nl~ivL~ar~l~p--~~kIIa~v~~~~~~~~L~~~GaD~--VIs 355 (393)
T PRK10537 286 PGDSSDSAVLKKAGAARARAILALRDN------DADNAFVVLAAKEMSS--DVKTVAAVNDSKNLEKIKRVHPDM--IFS 355 (393)
T ss_pred EeCCCCHHHHHhcCcccCCEEEEcCCC------hHHHHHHHHHHHHhCC--CCcEEEEECCHHHHHHHHhcCCCE--EEC
Confidence 999999999999999999999999976 9999999999999998 467999999999999999999998 589
Q ss_pred cHHHHHHHHHHHHcCCcHH-HHHHHHh
Q 004087 524 AHDVIGRLMIQCALQPGLA-QIWEDIL 549 (774)
Q Consensus 524 ~~el~a~lLaq~~~~Pg~~-~Vl~~Ll 549 (774)
|.++.+++|++.+..+.+. +.+.+++
T Consensus 356 p~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 356 PQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999876553 4455554
No 2
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.97 E-value=6.3e-29 Score=282.15 Aligned_cols=313 Identities=17% Similarity=0.205 Sum_probs=250.6
Q ss_pred CeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004087 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (774)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~ 462 (774)
+||+|||+|..+..+++.|... ++.|+++|.+++..+...+ ..++.++.||++++++|+++++++|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~~~~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEERLRRLQD-------RLDVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHHHHHHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCC
Confidence 4899999999999999999753 4788999999987765432 13578899999999999999999999
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCC---HHHH--HHcCCCeeEEeccHHHHHHHHHHHHc
Q 004087 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN---EPLV--KLVGGELIETVVAHDVIGRLMIQCAL 537 (774)
Q Consensus 463 aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~---~~~l--~~~Gad~VevV~~~el~a~lLaq~~~ 537 (774)
.+|+++++ |..|+.++..+|.+++. .++|+++.+.++ ...+ +.+|++. +|.|.++.+..|++.+.
T Consensus 68 ~vi~~~~~------~~~n~~~~~~~r~~~~~--~~ii~~~~~~~~~~~~~l~~~~~~G~~~--vi~p~~~~a~~l~~~l~ 137 (453)
T PRK09496 68 LLIAVTDS------DETNMVACQIAKSLFGA--PTTIARVRNPEYAEYDKLFSKEALGIDL--LISPELLVAREIARLIE 137 (453)
T ss_pred EEEEecCC------hHHHHHHHHHHHHhcCC--CeEEEEECCccccchhhhhhhhcCCccE--EECHHHHHHHHHHHHhc
Confidence 99999976 88999999999999763 579999988776 3333 6689997 48899999999999999
Q ss_pred CCcHHHHHHHHhccCC---ceEEeccCCccCCCcHHHHhhh-C-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEE
Q 004087 538 QPGLAQIWEDILGFEN---AEFYIKRWPQLDDLRFEEVVIS-F-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVI 612 (774)
Q Consensus 538 ~Pg~~~Vl~~Ll~~~g---~ei~i~~~p~lvGktf~el~~~-~-~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVI 612 (774)
.|+..+++. + .... .++.+.+.+++.|+++.|+..+ . .++.++||.| +++ .+.|+++++|++||+|+++
T Consensus 138 ~~~~~~~~~-~-~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r---~~~-~~~p~~~~~l~~gD~l~v~ 211 (453)
T PRK09496 138 YPGALDVEE-F-ADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFR---GGR-LIIPRGDTVIEAGDEVYFI 211 (453)
T ss_pred CCCceEeee-e-cCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEE---CCE-EEcCCCCcEecCCCEEEEE
Confidence 999876543 1 1111 3445555678999999999865 2 5899999987 355 5689999999999999999
Q ss_pred EeCCCCCCCCCCccccccccccCCCCCCCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCC
Q 004087 613 AEDDDTYAPGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLD 692 (774)
Q Consensus 613 a~~d~~~~~~~~p~v~~~~~~~~~~~~~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~ 692 (774)
|+.+++.++... ........++|+|||||+.|..+++.|.+. |.++++++.+| ++.+.+.+
T Consensus 212 g~~~~l~~~~~~----------~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~---~~~v~vid~~~--~~~~~~~~---- 272 (453)
T PRK09496 212 GAREHIRAVMSE----------FGRLEKPVKRVMIVGGGNIGYYLAKLLEKE---GYSVKLIERDP--ERAEELAE---- 272 (453)
T ss_pred eCHHHHHHHHHH----------hCccCCCCCEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCH--HHHHHHHH----
Confidence 999877654211 112224568999999999999999999874 89999999765 67777765
Q ss_pred cCCCCCceEEEEecCcccHhhhhcCCCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhh
Q 004087 693 ISGLMNIKLVHREGNAVIRRHLESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 693 ~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
.+.+. .+++||+++++.|++++++++|++|+++++ |..++.+.+++|.+..
T Consensus 273 --~~~~~--~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~---------~~~n~~~~~~~~~~~~ 323 (453)
T PRK09496 273 --ELPNT--LVLHGDGTDQELLEEEGIDEADAFIALTND---------DEANILSSLLAKRLGA 323 (453)
T ss_pred --HCCCC--eEEECCCCCHHHHHhcCCccCCEEEECCCC---------cHHHHHHHHHHHHhCC
Confidence 22343 358999999999999999999999998864 4567778888887743
No 3
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-28 Score=268.95 Aligned_cols=472 Identities=18% Similarity=0.266 Sum_probs=324.6
Q ss_pred CCCCChhHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC-------------CCHHHHHHHHHHHhhccC
Q 004087 263 KEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD-------------SSFAEALWLSWTFVADSG 329 (774)
Q Consensus 263 ~~~v~l~~rl~y~ld~~~s~~~~~~~l~Ll~~~l~lil~g~~~~~~ie~-------------~s~~dAly~~~~TltTvG 329 (774)
.+.+...+.+.| -+.+.+...-++..|+.+.+.+.+.++.+.+.+|+ .++++++|+.++||+|+|
T Consensus 227 lrlmtvpdilqy--lnilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvg 304 (1103)
T KOG1420|consen 227 LRLMTVPDILQY--LNILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVG 304 (1103)
T ss_pred HHhccHHHHHHH--HHHHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeecc
Confidence 344445555555 34566666666666666666777777777777763 578999999999999999
Q ss_pred CCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCcc-cccccCeEEEEcccc--hHHHHHHHHHHhc
Q 004087 330 NHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKS-EVIEKNHILILGWSD--KLGSLLKQLAVAN 405 (774)
Q Consensus 330 ygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~~l~~lr~G~~-~v~~k~HIII~G~g~--~~~~li~eL~~~~ 405 (774)
|||. -.|..||+|.++.+++|+++|+.-+.-|.+.+.++- ++ -|.. ....+.||||||+-. ....+++.+.+.+
T Consensus 305 ygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~-ky-ggeyk~ehgkkhivvcghityesvshflkdflhed 382 (1103)
T KOG1420|consen 305 YGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRK-KY-GGEYKAEHGKKHIVVCGHITYESVSHFLKDFLHED 382 (1103)
T ss_pred ccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcccc-cc-CceeehhcCCeeEEEecceeHHHHHHHHHHHhhcc
Confidence 9998 588899999999999999999999998888877651 11 1221 245788999999875 3667777777643
Q ss_pred ccCCCCceEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEEEEecCC--CCCCcchHHHHH
Q 004087 406 KSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALR 482 (774)
Q Consensus 406 ~~~~~~~iVVLid~d~e-~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~aVIiltdd--~~~~~sDa~NI~ 482 (774)
...-.-.+|.+-...|+ ++|.+..+ .-..|.|.+|..+++.+|.|+.+++||+++++++. .+++.+|+.|++
T Consensus 383 rddvdvevvflhr~~pdleleglfkr-----hft~veffqgtvmnp~dl~rvki~~adaclvlankyc~dpdaedaanim 457 (1103)
T KOG1420|consen 383 RDDVDVEVVFLHRISPDLELEGLFKR-----HFTQVEFFQGTVMNPHDLARVKIESADACLVLANKYCADPDAEDAANIM 457 (1103)
T ss_pred ccccceEEEEEecCCCCcchHHHHhh-----heeeEEEecccccChhhhhheeccccceeeeecccccCCCChhhhhhhe
Confidence 21111234444444443 45554433 24679999999999999999999999999999998 588999999999
Q ss_pred HHHHHhhhcCCCCceEEEEecCCCCHHHHHHc------CCCeeEEeccHHHHHHHHHHHHcCCcHHHHHHHHhcc-----
Q 004087 483 VVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLV------GGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF----- 551 (774)
Q Consensus 483 ~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~------Gad~VevV~~~el~a~lLaq~~~~Pg~~~Vl~~Ll~~----- 551 (774)
.++++|++.+. .++|+++..-.|..++-.. .+|. +||-.|+.-..|||+|..||+++.+.+|+.-
T Consensus 458 rvisiknys~d--irvi~qlmqyhnkayllnipswdwk~gdd--viclaelklgfiaqsclapgfstmmanlfamrsfkt 533 (1103)
T KOG1420|consen 458 RVISIKNYSPD--IRVITQLMQYHNKAYLLNIPSWDWKEGDD--VICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 533 (1103)
T ss_pred EEEEeccCCCc--hhHHHHHHHhhchheeecCCCcccccCCc--eEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccC
Confidence 99999999884 5688877665555554321 1233 5888999999999999999999999999842
Q ss_pred --------------CCceEEeccC-CccCCCcHHHHhhh-C--CCeEEEEEEEeec---CCeEEeCCCCCceecCCCEEE
Q 004087 552 --------------ENAEFYIKRW-PQLDDLRFEEVVIS-F--PDAIPCGIKVAAE---GGKIILNPDDNYVLKEGDEVL 610 (774)
Q Consensus 552 --------------~g~ei~i~~~-p~lvGktf~el~~~-~--~~~iVIGI~r~~~---~g~~~lnP~~d~vL~~GD~Li 610 (774)
.|.|.|.+.. |.|+|++|.++... | -+..+++|+.+.+ +.++.+||....+|++|..-+
T Consensus 534 sp~~~~w~ndylrg~gmemyte~lsp~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~h~kiq~~tqgf 613 (1103)
T KOG1420|consen 534 SPEEDTWQNDYLRGVGMEMYTEYLSPAFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGNHLKIQEGTQGF 613 (1103)
T ss_pred CcccchhHHHHHhhcchhHhhhhcCHhhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCCCceeccCCceE
Confidence 1357777665 46999999987654 3 3577888875422 245889999999999999999
Q ss_pred EEEeCCCCCCC--------------------CCC------------cccccc----------------ccccC--C----
Q 004087 611 VIAEDDDTYAP--------------------GPL------------PEVCKR----------------SFLKI--P---- 636 (774)
Q Consensus 611 VIa~~d~~~~~--------------------~~~------------p~v~~~----------------~~~~~--~---- 636 (774)
+||.+.+..+- +.+ |+.++. +.+.. +
T Consensus 614 fiaqsadevkraffyckachddikd~~likkckckn~k~~q~~~ls~~~k~~ngg~k~~p~~sp~~~r~~ts~~~g~~~~ 693 (1103)
T KOG1420|consen 614 FIAQSADEVKRAFFYCKACHDDIKDPKLIKKCKCKNLKDEQPSTLSPKKKQRNGGMKNSPNTSPKLMRHDTSLIPGNDQI 693 (1103)
T ss_pred EEecchHHHHHHHhhHHhhhhcccCHHHHHhcCCCcccccCchhcCccccCCCCCccCCCCCCHHHhcCCcccCCCCcch
Confidence 99986443210 000 000000 00000 0
Q ss_pred ------------------CCCC----------------CCceEEEEcccccH------HHHHHHHHHhc---CCCCeEEE
Q 004087 637 ------------------DPPK----------------YPEKILFCGWRRDI------DDMIMVLEAFL---APGSELWM 673 (774)
Q Consensus 637 ------------------~~~~----------------~~~rILI~Gwg~~g------~~l~~~L~~~l---~~Gs~v~I 673 (774)
-+++ -..+|++|=.++.- ..++..|++.- -.=-+|.+
T Consensus 694 ~~f~~~~mkydstgmfhwcp~k~ledcil~r~qaamtvlnghvvvclfad~dspliglrnlvmplrasnfhyhelkhvvi 773 (1103)
T KOG1420|consen 694 DNFDSHVMKYDSTGMFHWCPPKELEDCILTRSQAAMTVLNGHVVVCLFADVDSPLIGLRNLVMPLRASNFHYHELKHVVI 773 (1103)
T ss_pred hhhhhhhhccccccceeecCchhHHHHhhhhhHhhheeecCcEEEEEecCCCCchhhhhhheeeccccccchhheeeEEE
Confidence 0001 13378888776542 34555554310 01124555
Q ss_pred EecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCccEEEEeeCCC-CcCCcCCCcHHHHHHHHHHH
Q 004087 674 LNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSILILADES-LEDSIVHSDSRSLATLLLIR 752 (774)
Q Consensus 674 I~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD~vIiLtdd~-~~~~~~~~Ds~~L~tlLl~r 752 (774)
+-... --| +++.- ...|+.+.+ ++|.+.++..|+..+|.-.|.+++++-.- --++..-+|.+.|.+-|-++
T Consensus 774 vgsie-ylr-rewkt----l~nlpkisi--lngsplsradlravninlcdmcvilsa~vpn~ddttladkeailaslnik 845 (1103)
T KOG1420|consen 774 VGSIE-YLR-REWKT----LHNLPKISI--LNGSPLSRADLRAVNINLCDMCVILSANVPNIDDTTLADKEAILASLNIK 845 (1103)
T ss_pred EccHH-HHH-HHHHH----HhCCCceee--cCCCCCchhhhhhccccccceeEEEecCCCCCCCcccccHHHHHhhccce
Confidence 54321 112 22221 115677664 89999999999999999999999997532 22456789999998888777
Q ss_pred HHh
Q 004087 753 DIQ 755 (774)
Q Consensus 753 ~i~ 755 (774)
.++
T Consensus 846 amq 848 (1103)
T KOG1420|consen 846 AMQ 848 (1103)
T ss_pred eee
Confidence 655
No 4
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.94 E-value=1.5e-26 Score=223.09 Aligned_cols=201 Identities=50% Similarity=0.832 Sum_probs=173.5
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEeccHHHHHHHHHHHHcCCc
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~~~el~a~lLaq~~~~Pg 540 (774)
|++||+++.+++++++|++++.++|++..+..+.+.++||++.+.+++++++..|+..|+.| +++++++|.||+++||
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV--~dv~skL~VQCsRQ~G 78 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETV--HDVISKLMVQCSRQPG 78 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeH--HHHHHHHHHHhccCcc
Confidence 78999999999999999999999999999887777899999999999999999999998887 8899999999999999
Q ss_pred HHHHHHHHhccCCceEEeccCCccCCCcHHHHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004087 541 LAQIWEDILGFENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (774)
Q Consensus 541 ~~~Vl~~Ll~~~g~ei~i~~~p~lvGktf~el~~~~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~ 620 (774)
+.++|+++++++.++||+..||++.|++|+|+++.|+++++|||.| +|++.+||++++++++||+++|||+.+.-..
T Consensus 79 L~~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r---~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~~ 155 (206)
T PF06241_consen 79 LAQIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKR---DGKIVFHPDDDYVLREGDKLLVIAPVNGKRP 155 (206)
T ss_pred HHHHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeee---CCeeEECCCCCceeecCCEEEEEeecCCccc
Confidence 9999999999999999999999999999999999999999999997 5899999999999999999999999876422
Q ss_pred CCCCccccccccccCCCCCCCCceEEEEcccccHHHHHHHHHHhcCCCCe
Q 004087 621 PGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSE 670 (774)
Q Consensus 621 ~~~~p~v~~~~~~~~~~~~~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~ 670 (774)
-..++.+... ... .++..++.++++|..+...|+....+.+..|++
T Consensus 156 ~~~~~~v~~~---n~~-~~~~~~~~~~e~~k~rl~nivkrp~kslsk~Sd 201 (206)
T PF06241_consen 156 QTAYPSVRME---NIT-SPEDVRKHAFELWKTRLENIVKRPNKSLSKGSD 201 (206)
T ss_pred eEeccccccc---ccc-CCCchhhhhhhhhHhHHHHHHhCcccccccccc
Confidence 1112333211 111 233556788999999999999988765544543
No 5
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-22 Score=211.09 Aligned_cols=214 Identities=19% Similarity=0.242 Sum_probs=179.7
Q ss_pred CeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004087 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (774)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~ 462 (774)
+.++|+|.|+.|..+++.|.+ .++.|+++|+|++.++....+ ..+...++||++++++|++||+++||
T Consensus 1 m~iiIiG~G~vG~~va~~L~~------~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE------EGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh------CCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCC
Confidence 368999999999999999986 358999999999988774432 25688999999999999999999999
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEeccHHHHHHHHHHHHcCCcHH
Q 004087 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (774)
Q Consensus 463 aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~~~el~a~lLaq~~~~Pg~~ 542 (774)
++|+++++ |+.|+..|+.+++... .+++||+++++++.+.+++.|++. +|+|+..++..+++.+..|++.
T Consensus 69 ~vva~t~~------d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g~~~--ii~Pe~~~~~~l~~~i~~p~~~ 138 (225)
T COG0569 69 AVVAATGN------DEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLGADV--IISPEKLAAKRLARLIVTPGAL 138 (225)
T ss_pred EEEEeeCC------CHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcCCcE--EECHHHHHHHHHHHHhcCCChh
Confidence 99999977 9999999988877543 267999999999999999999997 5899999999999999999999
Q ss_pred HHHHHHhc-cCCceEEeccCCccCCCcHHHHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004087 543 QIWEDILG-FENAEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (774)
Q Consensus 543 ~Vl~~Ll~-~~g~ei~i~~~p~lvGktf~el~~~~-~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~ 620 (774)
+++...-+ .+..++.+.+.++++|++++|+..++ .++++++|+|. +...+.|+++++|++||+++++|..+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~---~~~~~~p~g~~~l~~gD~l~v~~~~~~i~~ 215 (225)
T COG0569 139 DVLELAGGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRG---GNELIIPRGDTTLEAGDRLIVIGAPEALRE 215 (225)
T ss_pred eEEeecCCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEecC---CCceecCCCCCEecCCCEEEEEEcHHHHHH
Confidence 98763111 01123444555689999999998655 58999999973 326789999999999999999999987765
Q ss_pred C
Q 004087 621 P 621 (774)
Q Consensus 621 ~ 621 (774)
+
T Consensus 216 ~ 216 (225)
T COG0569 216 V 216 (225)
T ss_pred H
Confidence 4
No 6
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.86 E-value=3.6e-20 Score=210.58 Aligned_cols=213 Identities=18% Similarity=0.194 Sum_probs=179.7
Q ss_pred cccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004087 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (774)
Q Consensus 380 ~~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~ 459 (774)
...+|+||||+|..+..+++.|... +..|+++|.+++..+...++ ..++.++.||+++++.|++++++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~~~ 296 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEGID 296 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcCCc
Confidence 3579999999999999999999752 47899999999877765432 23577899999999999999999
Q ss_pred cccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEeccHHHHHHHHHHHHcCC
Q 004087 460 KARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQP 539 (774)
Q Consensus 460 ~A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~~~el~a~lLaq~~~~P 539 (774)
+|+++|+++++ |..|+.+++.++.+++ .++|+++.++++.+.++.+|++. +|.|+.+.++.+++.+..|
T Consensus 297 ~a~~vi~~~~~------~~~n~~~~~~~~~~~~---~~ii~~~~~~~~~~~~~~~g~~~--vi~p~~~~~~~~~~~~~~~ 365 (453)
T PRK09496 297 EADAFIALTND------DEANILSSLLAKRLGA---KKVIALVNRPAYVDLVEGLGIDI--AISPRQATASEILRHVRRG 365 (453)
T ss_pred cCCEEEECCCC------cHHHHHHHHHHHHhCC---CeEEEEECCcchHHHHHhcCCCE--EECHHHHHHHHHHHHhhcc
Confidence 99999999976 8899999999999864 47999999999999999999997 4888999999999999999
Q ss_pred cHHHHHHHHhcc--CCceEEeccCCccCCCcHHHHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCC
Q 004087 540 GLAQIWEDILGF--ENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDD 617 (774)
Q Consensus 540 g~~~Vl~~Ll~~--~g~ei~i~~~p~lvGktf~el~~~~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~ 617 (774)
++..++.. ... +..++++.+.++++|++++|+... .++.++||.| +|+. ++|+++++|++||.|+++|+.++
T Consensus 366 ~~~~~~~~-~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r---~~~~-~~p~~~~~l~~gD~l~v~~~~~~ 439 (453)
T PRK09496 366 DIVAVHSL-RRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVR---GGEV-IIPTGDTVIEPGDHVIVFVLDKK 439 (453)
T ss_pred chhhhhhh-cCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEE---CCEE-EcCCCCcEECCCCEEEEEEcCcc
Confidence 98776542 211 224666777789999999999643 4899999997 4665 78999999999999999999998
Q ss_pred -CCCC
Q 004087 618 -TYAP 621 (774)
Q Consensus 618 -~~~~ 621 (774)
+.++
T Consensus 440 ~~~~~ 444 (453)
T PRK09496 440 FVPDV 444 (453)
T ss_pred hHHHH
Confidence 6553
No 7
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.5e-20 Score=205.26 Aligned_cols=319 Identities=13% Similarity=0.179 Sum_probs=229.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcc-----CCCHHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHH
Q 004087 285 YAKLLALLFATIFLIIFGGLALYAVS-----DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMML 358 (774)
Q Consensus 285 ~~~~l~Ll~~~l~lil~g~~~~~~ie-----~~s~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~li 358 (774)
+.+++.|..+++++++.|.+..-.+. ..+++.++|++++|++|+||||. |.-++.++..++++.+.+++++..+
T Consensus 184 ~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~ 263 (1087)
T KOG3193|consen 184 FRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL 263 (1087)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH
Confidence 34455555556677777777665553 37899999999999999999998 7778899999998888888777666
Q ss_pred HHHHHHHHHHHHhhhcCcc--cc-cccCeEEEEcccc---hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHh-h
Q 004087 359 GLVSDAISEKVDSLRKGKS--EV-IEKNHILILGWSD---KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK-L 431 (774)
Q Consensus 359 g~i~~~i~~~l~~lr~G~~--~v-~~k~HIII~G~g~---~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~-~ 431 (774)
.-+...-.+ +-+.|.. .. ....|+|||--.- ....+++|+....+. ++-.+|++. |.+++...+- +
T Consensus 264 ~~l~~tw~e---rqk~g~~~ss~~~~e~hvvv~~ttl~~~~i~dfl~efyahp~~-q~~~ivlls---p~eld~~~rmll 336 (1087)
T KOG3193|consen 264 DELGQTWSE---RQKSGTDFSSWNGVESHVVVTITTLEVEFIRDFLEEFYAHPEN-QRIQIVLLS---PAELDNQTRMLL 336 (1087)
T ss_pred HHHHHHHHH---HhhcCCCccccccccceEEEEEeeeeHHHHHHHHHHHhcCccc-ccEEEEEec---hHHhcchhhhhe
Confidence 554433222 2333432 22 3567999997653 355566776643222 222333333 3333333221 1
Q ss_pred hcccCCccEEEEEeCCCCHHHHhccCcccccEEEEecCCC--CCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHH
Q 004087 432 EFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDE--NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (774)
Q Consensus 432 ~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~aVIiltdd~--~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~ 509 (774)
..++++.++.+++|+....++|+||++..|+++++++... +-...|+.+++..+++|.+.|++ +-++++-.++..-
T Consensus 337 kiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapnv--~qyvqifr~e~k~ 414 (1087)
T KOG3193|consen 337 KIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPNV--KQYVQIFRAETKM 414 (1087)
T ss_pred eccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCch--HHHhhhhchhhhh
Confidence 2456788999999999999999999999999999999773 33467999999999999999954 4677777777665
Q ss_pred HHHHcCCCeeEEeccHHHHHHHHHHHHcCCcHHHHHHHHhcc--------------------CCceEEecc------CCc
Q 004087 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF--------------------ENAEFYIKR------WPQ 563 (774)
Q Consensus 510 ~l~~~Gad~VevV~~~el~a~lLaq~~~~Pg~~~Vl~~Ll~~--------------------~g~ei~i~~------~p~ 563 (774)
+.+.+ +. +||-+|+...++|+.|.+||+++++.-|+.. .|+|+|-.. ..+
T Consensus 415 hi~~a--e~--~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~e 490 (1087)
T KOG3193|consen 415 HIEHA--EV--LICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCE 490 (1087)
T ss_pred hhhhh--ee--EEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeee
Confidence 55533 34 5888999999999999999999999877632 135666433 236
Q ss_pred cCCCcHHHHhhh---CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCC
Q 004087 564 LDDLRFEEVVIS---FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDD 616 (774)
Q Consensus 564 lvGktf~el~~~---~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d 616 (774)
++|++|....+. -.|+-++|+.-......+.+||+...++++.|.+|+++-.+
T Consensus 491 y~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ 546 (1087)
T KOG3193|consen 491 YVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTN 546 (1087)
T ss_pred ecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCcccccCCCCeEEEEeccc
Confidence 899999887654 25788999974322345889999999999999999998754
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.70 E-value=5e-16 Score=181.77 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=125.1
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
.+||+||||+|+.+..++++|.+. +++|+++|+|++..+...+ .++.++.||++++++|+++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAA------GIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccc
Confidence 479999999999999999999763 4789999999988776532 46788999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEeccHHHHHHHHHHHHcCCc
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~~~el~a~lLaq~~~~Pg 540 (774)
||++++++++ |.+|..++.++|+.++ +.+|+||++++++.+.++.+|+|. +|+|++..++.+++.+..|+
T Consensus 482 a~~viv~~~~------~~~~~~iv~~~~~~~~--~~~iiar~~~~~~~~~l~~~Gad~--vv~p~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 482 ARWLLLTIPN------GYEAGEIVASAREKRP--DIEIIARAHYDDEVAYITERGANQ--VVMGEREIARTMLELLETPP 551 (558)
T ss_pred cCEEEEEcCC------hHHHHHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHcCCCE--EEChHHHHHHHHHHHhcCCC
Confidence 9999999976 7788888888898887 468999999999999999999998 58999999999999999999
Q ss_pred HHHHH
Q 004087 541 LAQIW 545 (774)
Q Consensus 541 ~~~Vl 545 (774)
..++.
T Consensus 552 ~~~~~ 556 (558)
T PRK10669 552 AGEVV 556 (558)
T ss_pred ccccc
Confidence 98764
No 9
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.62 E-value=2.1e-14 Score=169.29 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=111.3
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
.++|+||||+|+.+..+++.|.+. +++++++|.|++.++...+ .+..++.||+++++.|++||+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMAN------KMRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhC------CCCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCcc
Confidence 478999999999999999999753 4789999999998886532 35678999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEeccHHH-HHHHHHHHH
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDV-IGRLMIQCA 536 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~~~el-~a~lLaq~~ 536 (774)
|+++|++++| |+.|+.+|..+|+++|+ .+|+||++|+++.+.++.+|+|. |+++.+ .+..+++.+
T Consensus 465 A~~vv~~~~d------~~~n~~i~~~~r~~~p~--~~IiaRa~~~~~~~~L~~~Ga~~---vv~e~~es~l~l~~~~ 530 (601)
T PRK03659 465 AEAIVITCNE------PEDTMKIVELCQQHFPH--LHILARARGRVEAHELLQAGVTQ---FSRETFSSALELGRKT 530 (601)
T ss_pred CCEEEEEeCC------HHHHHHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHhCCCCE---EEccHHHHHHHHHHHH
Confidence 9999999987 99999999999999984 67999999999999999999997 344543 455554443
No 10
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.62 E-value=4.9e-15 Score=137.30 Aligned_cols=113 Identities=23% Similarity=0.369 Sum_probs=98.8
Q ss_pred EEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEE
Q 004087 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (774)
Q Consensus 385 III~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~aV 464 (774)
|||||||+.+..++++|... +..|+++|.|++..+.+.+ .++.++.||++++++|+++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEE
Confidence 79999999999999999872 3689999999988887654 236789999999999999999999999
Q ss_pred EEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCee
Q 004087 465 IVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELI 519 (774)
Q Consensus 465 Iiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~V 519 (774)
|+++++ |+.|+.+|+.+|++++. .+++|++.++++.+.++.+|+|.+
T Consensus 67 v~~~~~------d~~n~~~~~~~r~~~~~--~~ii~~~~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 67 VILTDD------DEENLLIALLARELNPD--IRIIARVNDPENAELLRQAGADHV 113 (116)
T ss_dssp EEESSS------HHHHHHHHHHHHHHTTT--SEEEEEESSHHHHHHHHHTT-SEE
T ss_pred EEccCC------HHHHHHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHCCcCEE
Confidence 999976 99999999999999884 689999999999999999999974
No 11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.58 E-value=9.6e-14 Score=164.12 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=110.1
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
.++|+||||+|+.+..++++|.+. +..++++|+|++.++...+ .+..++.||+++++.|+++|+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSS------GVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhC------CCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCc
Confidence 469999999999999999998753 4789999999998887632 35678999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEeccHHHHHHHHHHHH
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCA 536 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~~~el~a~lLaq~~ 536 (774)
|+.+|++++| |+.|+.++..+|+.+|+ .+|+||.+|+++...++.+|+|.+ +......+..+++.+
T Consensus 465 A~~vvv~~~d------~~~n~~i~~~ar~~~p~--~~iiaRa~d~~~~~~L~~~Gad~v--~~e~~e~sl~l~~~~ 530 (621)
T PRK03562 465 AEVLINAIDD------PQTSLQLVELVKEHFPH--LQIIARARDVDHYIRLRQAGVEKP--ERETFEGALKSGRLV 530 (621)
T ss_pred CCEEEEEeCC------HHHHHHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHCCCCEE--ehhhHhHHHHHHHHH
Confidence 9999999977 99999999999999985 579999999999999999999974 322222444444444
No 12
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.11 E-value=1.2e-10 Score=101.26 Aligned_cols=72 Identities=21% Similarity=0.450 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhhhh---ccCCCHHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHHHHH
Q 004087 295 TIFLIIFGGLALYA---VSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAIS 366 (774)
Q Consensus 295 ~l~lil~g~~~~~~---ie~~s~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~ 366 (774)
++.++..|+.+++. .|++++.||+||+++|+||+||||. |.+..||+++++.++.|+.+++++++.+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666 4678999999999999999999998 788899999999999999999999999888764
No 13
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=98.92 E-value=5.6e-09 Score=96.70 Aligned_cols=89 Identities=25% Similarity=0.372 Sum_probs=75.2
Q ss_pred EEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCccE
Q 004087 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 724 (774)
Q Consensus 645 ILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD~ 724 (774)
|+|||||+.|..+++.|.+. +..+++++.+ +++++.+.+.| . .+++||++|++.|++++++++|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vvvid~d--~~~~~~~~~~~--------~--~~i~gd~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVVVIDRD--PERVEELREEG--------V--EVIYGDATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEEEEESS--HHHHHHHHHTT--------S--EEEES-TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEEEEECC--cHHHHHHHhcc--------c--ccccccchhhhHHhhcCccccCE
Confidence 68999999999999999873 6799999975 47788887632 2 36899999999999999999999
Q ss_pred EEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 725 ILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 725 vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
+|+++++ |..++.+.+.+|++.+.
T Consensus 66 vv~~~~~---------d~~n~~~~~~~r~~~~~ 89 (116)
T PF02254_consen 66 VVILTDD---------DEENLLIALLARELNPD 89 (116)
T ss_dssp EEEESSS---------HHHHHHHHHHHHHHTTT
T ss_pred EEEccCC---------HHHHHHHHHHHHHHCCC
Confidence 9999864 67999999999998875
No 14
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.3e-09 Score=121.51 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhc--cC----CCHHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHH
Q 004087 289 LALLFATIFLIIFGGLALYAV--SD----SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (774)
Q Consensus 289 l~Ll~~~l~lil~g~~~~~~i--e~----~s~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i 361 (774)
+.+++++++++++++++|+.- |+ .|..-++||+++|||||||||. |.|+.||+++..-++.|++++|+-|.+|
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 556677788888888888763 21 5789999999999999999998 8999999999999999999999999988
Q ss_pred HHHHHHH
Q 004087 362 SDAISEK 368 (774)
Q Consensus 362 ~~~i~~~ 368 (774)
.+-+...
T Consensus 427 v~nF~~~ 433 (477)
T KOG3713|consen 427 VNNFSMY 433 (477)
T ss_pred hhhHHHH
Confidence 8776654
No 15
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.77 E-value=1.9e-07 Score=92.90 Aligned_cols=143 Identities=22% Similarity=0.268 Sum_probs=116.7
Q ss_pred ccccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004087 379 VIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (774)
Q Consensus 379 v~~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI 458 (774)
....+|++|||+|+.+..+...|... +..+++++.+++..+... ..++.++.||+++.+.|.++++
T Consensus 18 ~~l~~~~ii~g~~~~g~~~~~~l~~~------~~~~~vi~~~~~~~~~~~--------~~~~~~~~gd~~~~~~l~~a~~ 83 (212)
T COG1226 18 VRLKRHVIIVGFGRVGQIVARALLAS------GIPVVVIDSDEDRVELLR--------ELGLLVVLGDATREEVLEAAGI 83 (212)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHHC------CCCEEEEECCHHHHHHHH--------HCCCcEEEecCCCHHHHHhcCh
Confidence 46789999999999999999988753 348899999987666543 2356789999999999999999
Q ss_pred ccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecC-CCCHHHHHHcCCCeeEEeccHHHHHHHHHHHHc
Q 004087 459 SKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD-LDNEPLVKLVGGELIETVVAHDVIGRLMIQCAL 537 (774)
Q Consensus 459 ~~A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d-~e~~~~l~~~Gad~VevV~~~el~a~lLaq~~~ 537 (774)
+.|+.++++.++ +..|+.++..++.++|.. +++++..+ ..+...+...|++. ++++....+..++..+.
T Consensus 84 ~~a~~vi~~~~~------~~~~~~~~~~~~~~~p~~--~i~~~~~~~~~~~~~l~~~G~~~--vi~~~~~~~~~~~~~~~ 153 (212)
T COG1226 84 ERARAVIVTLSD------DATNVFIVLLARAINPEL--EILARARDLDEAVETLTTVGADE--VVPPTFESALLLARAAL 153 (212)
T ss_pred hheeEEEEecCC------HHHHHHHHHHHHHHCCCC--EEEEEeccchHHHHHHHHcCCCe--eecHHHHHHHHHHHHHh
Confidence 999999999976 889999999999999854 59999998 66677888999997 47776777777777777
Q ss_pred CCcHHHHH
Q 004087 538 QPGLAQIW 545 (774)
Q Consensus 538 ~Pg~~~Vl 545 (774)
.+......
T Consensus 154 ~~~~~~~~ 161 (212)
T COG1226 154 VGLGGDSV 161 (212)
T ss_pred cccCCchh
Confidence 66554443
No 16
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2.3e-09 Score=114.39 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHH
Q 004087 289 LALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (774)
Q Consensus 289 l~Ll~~~l~lil~g~~~~~~ie~------~s~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i 361 (774)
+.++++.+.+|++++..|+.-.+ .|..|||||+++|||||||||. |.|.+|++++-+..+.|++.++.-+.+|
T Consensus 363 LLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 363 LLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred HHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 34456667788888887766422 5789999999999999999998 8999999999999999999888877776
Q ss_pred HHHHHH
Q 004087 362 SDAISE 367 (774)
Q Consensus 362 ~~~i~~ 367 (774)
.+-+.-
T Consensus 443 VsNFny 448 (507)
T KOG1545|consen 443 VSNFNY 448 (507)
T ss_pred Eecccc
Confidence 654433
No 17
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.1e-07 Score=99.27 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=73.9
Q ss_pred ceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHH-hhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~-l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
.+++|+|.|+.|..+++.|.+ .|.+|.+|+.+ ++++++ +++ ....++++||++|++.|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~---~g~~Vv~Id~d--~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE---EGHNVVLIDRD--EERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh---CCCceEEEEcC--HHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCc
Confidence 379999999999999999987 49999999985 578777 332 233567999999999999999999
Q ss_pred ccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhh
Q 004087 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 722 aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
||++|++|+++. .+.+++.|..+.+..
T Consensus 67 aD~vva~t~~d~--------~N~i~~~la~~~~gv 93 (225)
T COG0569 67 ADAVVAATGNDE--------VNSVLALLALKEFGV 93 (225)
T ss_pred CCEEEEeeCCCH--------HHHHHHHHHHHhcCC
Confidence 999999998643 456666666665543
No 18
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.60 E-value=2.1e-08 Score=112.32 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=78.2
Q ss_pred hhccccccCCCCChhHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC-----------CCHHHHHHHHHH
Q 004087 255 FSKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD-----------SSFAEALWLSWT 323 (774)
Q Consensus 255 ~~~~~~~~~~~v~l~~rl~y~ld~~~s~~~~~~~l~Ll~~~l~lil~g~~~~~~ie~-----------~s~~dAly~~~~ 323 (774)
+.+|-.++.++.+-|+-+...+ +. +.+- ++....+.++.+++.+.+.|..|. .++.||+||.++
T Consensus 205 QILRmlr~DRrggTWKLLGSvV--~a--H~~E-LiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~I 279 (654)
T KOG1419|consen 205 QILRMLRMDRRGGTWKLLGSVV--YA--HSKE-LITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVI 279 (654)
T ss_pred HHHHHHHhhccCchhhhhhhhh--hh--hHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhe
Confidence 3456667777777775555443 11 1222 233334444445555555556652 479999999999
Q ss_pred HhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHHHHHHHH
Q 004087 324 FVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKV 369 (774)
Q Consensus 324 TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~~l 369 (774)
|+||+||||. |.|+.||+++..+.++|+-+|+.--|++...+.-++
T Consensus 280 TltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV 326 (654)
T KOG1419|consen 280 TLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV 326 (654)
T ss_pred eEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 9999999998 899999999999999999999988888776665444
No 19
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.59 E-value=1.2e-07 Score=106.61 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=73.2
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
.+|++|||||+.|..++++|.+ .|.++++|+++. . ++... ++. .+++||++|++.|+++|+++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~---~g~~vvVId~d~--~-~~~~~---------~g~--~vI~GD~td~e~L~~AgI~~ 302 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQ---RGQAVTVIVPLG--L-EHRLP---------DDA--DLIPGDSSDSAVLKKAGAAR 302 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHH---CCCCEEEEECch--h-hhhcc---------CCC--cEEEeCCCCHHHHHhcCccc
Confidence 4689999999999999999976 388999998642 1 11111 223 35899999999999999999
Q ss_pred ccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 722 aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
|+++|++++| |+.++++.+.+|+++++
T Consensus 303 A~aVI~~t~d---------D~~Nl~ivL~ar~l~p~ 329 (393)
T PRK10537 303 ARAILALRDN---------DADNAFVVLAAKEMSSD 329 (393)
T ss_pred CCEEEEcCCC---------hHHHHHHHHHHHHhCCC
Confidence 9999999864 67899999999999863
No 20
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.55 E-value=2.2e-07 Score=110.52 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=79.0
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
.++|+|||+|+.|..+++.|.+ .|.++++||.++ +|++.+.+. +. .+++||++|++.|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~d~--~~v~~~~~~--------g~--~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS---SGVKMTVLDHDP--DHIETLRKF--------GM--KVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh---CCCCEEEEECCH--HHHHHHHhc--------CC--eEEEEeCCCHHHHHhcCCCc
Confidence 4689999999999999999987 489999999854 889988752 23 35899999999999999999
Q ss_pred ccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 722 aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
+|.+|+++|| |..++.+...+|++.++
T Consensus 465 A~~vvv~~~d---------~~~n~~i~~~ar~~~p~ 491 (621)
T PRK03562 465 AEVLINAIDD---------PQTSLQLVELVKEHFPH 491 (621)
T ss_pred CCEEEEEeCC---------HHHHHHHHHHHHHhCCC
Confidence 9999999875 46888888999988764
No 21
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.52 E-value=2.5e-07 Score=109.63 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=78.4
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
..+|+|||+|+.|..+++.|.+. |.++++||.+| ++++.+.+.| . .+++||++|++.|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d~--~~v~~~~~~g--------~--~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---KMRITVLERDI--SAVNLMRKYG--------Y--KVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---CCCEEEEECCH--HHHHHHHhCC--------C--eEEEeeCCCHHHHHhcCCcc
Confidence 46899999999999999999864 89999999754 7888887522 2 36899999999999999999
Q ss_pred ccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 722 aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
+|.+|++++| |..++.+...+|+..++
T Consensus 465 A~~vv~~~~d---------~~~n~~i~~~~r~~~p~ 491 (601)
T PRK03659 465 AEAIVITCNE---------PEDTMKIVELCQQHFPH 491 (601)
T ss_pred CCEEEEEeCC---------HHHHHHHHHHHHHHCCC
Confidence 9999999875 46788888889988654
No 22
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.45 E-value=3.6e-07 Score=112.24 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=47.7
Q ss_pred HHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHHHHHH
Q 004087 317 ALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (774)
Q Consensus 317 Aly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~ 367 (774)
|+||+++|+|||||||+ |.+..+|+|++++|++|+++|++++|.+++.+.+
T Consensus 254 slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 254 AIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998 7899999999999999999999999999887654
No 23
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.41 E-value=7.4e-07 Score=104.88 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=73.3
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
..+|++|||+|+.|..+++.|.+. |.++.+||.+ +++++.+.+. +. .+++||++|++.|++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~d--~~~~~~~~~~--------g~--~~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAA---GIPLVVIETS--RTRVDELRER--------GI--RAVLGNAANEEIMQLAHLD 480 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHC---CCCEEEEECC--HHHHHHHHHC--------CC--eEEEcCCCCHHHHHhcCcc
Confidence 367999999999999999999864 8999999975 5788888762 22 3689999999999999999
Q ss_pred CccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhh
Q 004087 721 TFDSILILADESLEDSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 721 ~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
++|.++++++|+ .++....+.+|...+
T Consensus 481 ~a~~viv~~~~~---------~~~~~iv~~~~~~~~ 507 (558)
T PRK10669 481 CARWLLLTIPNG---------YEAGEIVASAREKRP 507 (558)
T ss_pred ccCEEEEEcCCh---------HHHHHHHHHHHHHCC
Confidence 999999987652 344444455566543
No 24
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=98.39 E-value=8e-07 Score=94.55 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHhhccCCCCC-C-CC-------ccCceeeehhhHhHHHHHHHHH
Q 004087 288 LLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-R-VG-------TGPRIVSVSISSGGMLIFAMML 358 (774)
Q Consensus 288 ~l~Ll~~~l~lil~g~~~~~~ie~~s~~dAly~~~~TltTvGygd~-~-~t-------~~gRi~~v~lil~Gl~ifa~li 358 (774)
++.++...++++..|+..|..+|+||++||+|+.++|+||+||||. + +. ..=+.+.++.|++|+.+++.++
T Consensus 161 ~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~ 240 (350)
T KOG4404|consen 161 VLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALL 240 (350)
T ss_pred HHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHH
Confidence 3566666778888899999999999999999999999999999996 2 22 1235678899999999999888
Q ss_pred HHHHHHHHH
Q 004087 359 GLVSDAISE 367 (774)
Q Consensus 359 g~i~~~i~~ 367 (774)
.+++-.+..
T Consensus 241 NllvLrf~t 249 (350)
T KOG4404|consen 241 NLLVLRFMT 249 (350)
T ss_pred HHHHHHHHH
Confidence 877654443
No 25
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.25 E-value=2.2e-06 Score=83.56 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=57.6
Q ss_pred ceEEeccCCccCCCcHHHHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004087 554 AEFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (774)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~-~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~~ 621 (774)
.++++...++++|++++|+..+ ..+++||||.| +++.+++|++.++|++||.|||+|+.....++
T Consensus 88 ~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r---~~e~I~SPgPy~vle~gDtlvviG~~~~~~r~ 153 (162)
T COG0490 88 EWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVR---NEEKILSPGPYTVLEAGDTLVVIGEETGLKRA 153 (162)
T ss_pred eeeeeecCCcccCcchhhcccccccCcEEEEEEe---cCcEecCCCchhhhcCCCEEEEEecchHhHHH
Confidence 4678888899999999999876 47999999998 58899999999999999999999998877654
No 26
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.00014 Score=78.43 Aligned_cols=210 Identities=13% Similarity=0.060 Sum_probs=137.5
Q ss_pred CeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc-cCcccc
Q 004087 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK-VSVSKA 461 (774)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~r-AgI~~A 461 (774)
+.|+|+|-|..+..+++.++...+ ......++.++.+..+... .-..+.+..-|+++.+.|+. .+-+..
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~---~~~f~~vv~~~qe~~~~~~-------~~e~~~fh~fdaTs~~rl~~~~n~~~~ 71 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS---NHNFYIVVVKNQESLIPKN-------YPETFAFHCFDATSSFRLLQVLNDEVS 71 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc---CceEEEEEeechhhccccc-------CcceEEEEEeCCccHHHHHHHhhhHhh
Confidence 579999999999999988876442 2355556666654433211 12347777889999999876 577888
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEeccHHHHHHHHHHHHcCCcH
Q 004087 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGL 541 (774)
Q Consensus 462 ~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~~~el~a~lLaq~~~~Pg~ 541 (774)
+|+|+.-+ -.++..+.-++|..+++....|+.-....++-+..+...++ .+...+..++.....+ ||+
T Consensus 72 ~Afi~~qd-------~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~---lid~~~vL~~~F~~~L--p~I 139 (471)
T COG3400 72 DAFIIIQD-------FKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLI---LIDEFEVLANKFISRL--PNI 139 (471)
T ss_pred hhheehhh-------HHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhccccee---ecchHHHHHHHHHHhc--CCc
Confidence 99999874 34566777888888876544455444433333344445554 3445555555444333 233
Q ss_pred HHHHHHH-hc-cCCceEEeccCCccCCCcHHHHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCC
Q 004087 542 AQIWEDI-LG-FENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTY 619 (774)
Q Consensus 542 ~~Vl~~L-l~-~~g~ei~i~~~p~lvGktf~el~~~~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~ 619 (774)
...-..+ ++ .+-.|+.+...+.|+=+.++++..+ .+.+++++| +|+ .+-|..+.+|++||+++|+|++..+.
T Consensus 140 ~~tp~~iGLgkGEImEI~vp~gSifaYrhi~sI~qk--~~RIvl~YR---N~k-lll~~~slvlqp~D~lLVvG~P~~ln 213 (471)
T COG3400 140 PSTPREIGLGKGEIMEIDVPFGSIFAYRHIGSIRQK--EYRIVLLYR---NDK-LLLSTKSLVLQPRDILLVVGNPEILN 213 (471)
T ss_pred cccchhcccccceEEEEecCCCchhhhhhhhhhhhh--eeEEEEEEE---CCE-EEEeccceEecCCCEEEEeCChHHHH
Confidence 2211111 11 1225677777788888999998753 688999998 465 56688999999999999999987554
Q ss_pred C
Q 004087 620 A 620 (774)
Q Consensus 620 ~ 620 (774)
.
T Consensus 214 ~ 214 (471)
T COG3400 214 A 214 (471)
T ss_pred H
Confidence 3
No 27
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=97.94 E-value=5.9e-06 Score=69.84 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=46.3
Q ss_pred eEEeccCCccCCCcHHHHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004087 555 EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (774)
Q Consensus 555 ei~i~~~p~lvGktf~el~~~~-~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~ 620 (774)
|+.+.+.++++|++++|+.... +++.++||.| ++..+.|.++++|++||.|+++|+.+++.+
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R----~~~~~~p~~~~~l~~gD~l~v~g~~~~i~~ 65 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKR----GGEIIIPDGDTVLQAGDILIVVGDPEDIER 65 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEE----TEEEES--TT-BE-TTEEEEEEEEHHHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEE----CCEEECCCCCCEECCCCEEEEEECHHHHHH
Confidence 5667777899999999966542 4899999987 367889999999999999999999876543
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.91 E-value=9.9e-07 Score=95.15 Aligned_cols=94 Identities=21% Similarity=0.367 Sum_probs=73.0
Q ss_pred HHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHHhhccCCCCC-CCCccCcee
Q 004087 270 KRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIV 342 (774)
Q Consensus 270 ~rl~y~ld~~~s~~~~~~~l~Ll~~~l~lil~g~~~~~~ie~------~s~~dAly~~~~TltTvGygd~-~~t~~gRi~ 342 (774)
..+.|-|...-+..+ +.++.++..+|+++++.||.--+ .+...|||++++|+||.||||. |.|.+|+||
T Consensus 311 RILGYTLKSCASELG----FLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIf 386 (632)
T KOG4390|consen 311 RILGYTLKSCASELG----FLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIF 386 (632)
T ss_pred chhhhhHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHh
Confidence 357787776666666 34445566677777777765433 5789999999999999999998 788999999
Q ss_pred eehhhHhHHHHHHHHHHHHHHHHHH
Q 004087 343 SVSISSGGMLIFAMMLGLVSDAISE 367 (774)
Q Consensus 343 ~v~lil~Gl~ifa~lig~i~~~i~~ 367 (774)
+-+..+.|+++++.-+.+|..-+..
T Consensus 387 GsiCSLSGVLVIALPVPvIVSNFSR 411 (632)
T KOG4390|consen 387 GSICSLSGVLVIALPVPVIVSNFSR 411 (632)
T ss_pred hhhhcccceEEEeccccEEEechhH
Confidence 9999999999888877777655544
No 29
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.0012 Score=73.88 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=70.6
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC--------CCHHHHHHHHHHHhhccCCCCC-CCCccCcee
Q 004087 272 VAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD--------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIV 342 (774)
Q Consensus 272 l~y~ld~~~s~~~~~~~l~Ll~~~l~lil~g~~~~~~ie~--------~s~~dAly~~~~TltTvGygd~-~~t~~gRi~ 342 (774)
+++.+.-.|...|- ..|++.++.++++.++.+.+-|. .++.++.|+...|+-++||||+ |.|..||.+
T Consensus 241 ~rFV~Kt~M~~~Pg---~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v 317 (489)
T KOG3684|consen 241 FRFVLKTLMTICPG---TVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGV 317 (489)
T ss_pred hhhhHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchH
Confidence 44444445555553 34446677778888888777652 3599999999999999999998 889999999
Q ss_pred eehhhHhHHHHHHHHHHHHHHHH
Q 004087 343 SVSISSGGMLIFAMMLGLVSDAI 365 (774)
Q Consensus 343 ~v~lil~Gl~ifa~lig~i~~~i 365 (774)
+++.-++|.++-++++++|+--+
T Consensus 318 ~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 318 ALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHH
Confidence 99999999998888888876443
No 30
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.70 E-value=6.5e-05 Score=82.82 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=65.5
Q ss_pred chhHHHHHHHH-HHHHHHHHHhhhhhhc-------cC--------------CCHHHHHHHHHHHhhccCCCCC---CCCc
Q 004087 283 YPYAKLLALLF-ATIFLIIFGGLALYAV-------SD--------------SSFAEALWLSWTFVADSGNHAD---RVGT 337 (774)
Q Consensus 283 ~~~~~~l~Ll~-~~l~lil~g~~~~~~i-------e~--------------~s~~dAly~~~~TltTvGygd~---~~t~ 337 (774)
-+|+.++.+++ ..++..++.+++||++ +. .+|.+|||+++.|.||+|||.. +...
T Consensus 32 ~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~ 111 (336)
T PF01007_consen 32 MSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECP 111 (336)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHH
T ss_pred CCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcc
Confidence 45776555544 3445555556666543 11 5899999999999999999984 3445
Q ss_pred cCceeeehhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccCeEEEEcc
Q 004087 338 GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGW 390 (774)
Q Consensus 338 ~gRi~~v~lil~Gl~ifa~lig~i~~~i~~~l~~lr~G~~~v~~k~HIII~G~ 390 (774)
.+-++..+-.++|+++.++++|++..-+.. =+++...+...++.||+-.
T Consensus 112 ~a~~l~~~q~~~g~l~~a~~~Glvfar~sr----P~~R~~tI~FS~~AVI~~~ 160 (336)
T PF01007_consen 112 YAIFLVTIQSLVGLLLDAFMTGLVFARFSR----PKKRASTILFSKKAVIAPR 160 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCCGGGSEEE-SSEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccccceEEEEeeeEEeec
Confidence 677777788899999999999987654432 1111123456677777644
No 31
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.58 E-value=0.00029 Score=84.13 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHHHHHHH
Q 004087 314 FAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (774)
Q Consensus 314 ~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~~ 368 (774)
+..|+||++.|+||+|||+. +.+....+|++++|++|+++||++||-++..+...
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 46799999999999999998 46778899999999999999999999988877653
No 32
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00017 Score=80.57 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 004087 311 DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLR 373 (774)
Q Consensus 311 ~~s~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~~l~~lr 373 (774)
.|+|.+|+|++++++||+|||++ |.|..||+|+++..++|+-++.+.++-+...+.+.+..+.
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~ 176 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLY 176 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999998 7899999999999999999998888888888777655543
No 33
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=97.31 E-value=0.00069 Score=62.04 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCCeeEEeccHHHHHHHHHHHHcCCcHHHHHHHHhccC--------------------CceEEeccCC-ccCCCcHHHHh
Q 004087 515 GGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE--------------------NAEFYIKRWP-QLDDLRFEEVV 573 (774)
Q Consensus 515 Gad~VevV~~~el~a~lLaq~~~~Pg~~~Vl~~Ll~~~--------------------g~ei~i~~~p-~lvGktf~el~ 573 (774)
++|. +||.+++...+||+++.+||+++++.+|+... ++|+|....| .|.|++|.++.
T Consensus 9 ~~d~--vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~~ 86 (101)
T PF03493_consen 9 FADQ--VICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEAA 86 (101)
T ss_dssp TT-E--EEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHHH
T ss_pred cCce--EEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHHH
Confidence 4565 59999999999999999999999999998641 2578887776 69999999998
Q ss_pred hh-C--CCeEEEEEE
Q 004087 574 IS-F--PDAIPCGIK 585 (774)
Q Consensus 574 ~~-~--~~~iVIGI~ 585 (774)
.. | .+++++||+
T Consensus 87 ~~~~~~~~viLigIe 101 (101)
T PF03493_consen 87 RLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHS--EEEEEE
T ss_pred HHHHHHcCcEEEEeC
Confidence 74 2 589999985
No 34
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.19 E-value=0.0009 Score=66.12 Aligned_cols=82 Identities=11% Similarity=0.074 Sum_probs=60.0
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
..++|+|+|||++|...++.|.++ |.+|+||+. +.++++.+ +..+. .+.+.+++.+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~---ga~V~VIsp----~~~~~l~~-------l~~i~--------~~~~~~~~~dl~ 69 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT---GAFVTVVSP----EICKEMKE-------LPYIT--------WKQKTFSNDDIK 69 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcC----ccCHHHHh-------ccCcE--------EEecccChhcCC
Confidence 357899999999999999999764 999999974 44555543 22222 246778889999
Q ss_pred CccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHH
Q 004087 721 TFDSILILADESLEDSIVHSDSRSLATLLLIRD 753 (774)
Q Consensus 721 ~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~ 753 (774)
.+|.+++.|||+ ..+......++.
T Consensus 70 ~a~lViaaT~d~---------e~N~~i~~~a~~ 93 (157)
T PRK06719 70 DAHLIYAATNQH---------AVNMMVKQAAHD 93 (157)
T ss_pred CceEEEECCCCH---------HHHHHHHHHHHH
Confidence 999999998763 355555555554
No 35
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00025 Score=76.03 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=74.1
Q ss_pred hhhhHHHHHHHHH-HHHHHHHHHhhchHHHhhh--hh-ccccccCCCCChhHHHHHhhhhhhccchhHHHHHHHHHHHHH
Q 004087 223 DGRTVALYSVIVT-LLMPFVLYKYLDYLPQIKN--FS-KRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFL 298 (774)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~--~~-~~~~~~~~~v~l~~rl~y~ld~~~s~~~~~~~l~Ll~~~l~l 298 (774)
+.|.+++++..|+ |++|+-+|-++..=.+.+. .+ .+..+.+++..+++. -+..+...
T Consensus 6 nvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~------------d~r~~er~------- 66 (350)
T KOG4404|consen 6 NVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEE------------DYRELERV------- 66 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHH------------HHHHHHHH-------
Confidence 4788999999999 9999999987766544421 11 111222233333222 22222211
Q ss_pred HHHHhhhhhhccCCCHHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHH
Q 004087 299 IIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSD 363 (774)
Q Consensus 299 il~g~~~~~~ie~~s~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~ 363 (774)
++-+.---.-..|.|.-|||++.+.+||+|||-. |.|.+||+|.++..++|+-.--+++..+.+
T Consensus 67 -i~~s~ph~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 67 -ILKSEPHKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred -HHhcCccccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 0101000111258999999999999999999976 789999999998888885543333333333
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.17 E-value=5.8e-05 Score=84.41 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHhhccCCCCC-CCCccCc--------eeeehhhHhHHHHHHHHH
Q 004087 293 FATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPR--------IVSVSISSGGMLIFAMML 358 (774)
Q Consensus 293 ~~~l~lil~g~~~~~~ie~~s~~dAly~~~~TltTvGygd~-~~t~~gR--------i~~v~lil~Gl~ifa~li 358 (774)
.++++.+..|+.++...|+++|++|+|++++++||+||||. |.+..++ .+..+++++|+..++...
T Consensus 222 ~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 222 GISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 44555667778888888999999999999999999999998 6666655 356677778877776655
No 37
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0013 Score=74.95 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHHHHHHH
Q 004087 314 FAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (774)
Q Consensus 314 ~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~~ 368 (774)
+..++||+++.+||+|||.+ |.|...++|++.+|++|-++++.++|-++..|.+.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67899999999999999998 67889999999999999999999999887776653
No 38
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0014 Score=65.26 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=52.8
Q ss_pred eEEeccCCccCCCcHHHHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004087 555 EFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (774)
Q Consensus 555 ei~i~~~p~lvGktf~el~~~-~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~ 620 (774)
.+.+.+.+.++|+|++|+... ..++.||+|+| ++..+++|+.++.|.+||.|++-|++.....
T Consensus 122 rv~v~~~S~l~gktLg~l~L~t~tGvrVIAIRR---G~~wi~~Pd~~~~Ir~gDvLIarG~~~g~~~ 185 (204)
T COG3273 122 RVRVEKGSELAGKTLGELDLATNTGVRVIAIRR---GERWIYGPDEDTKIREGDVLIARGTDAGVEL 185 (204)
T ss_pred EEEecCCCeecccchhhhccccccceEEEEEec---CCccccCCCccceeccCCEEEEecchhhHHH
Confidence 355667788999999999875 46899999997 4568899999999999999999998765544
No 39
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.60 E-value=0.035 Score=63.39 Aligned_cols=232 Identities=18% Similarity=0.249 Sum_probs=130.0
Q ss_pred ccCeEEEEcccchHHHHH--HH----HHHhccc-CCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHH
Q 004087 381 EKNHILILGWSDKLGSLL--KQ----LAVANKS-IGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li--~e----L~~~~~~-~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L 453 (774)
..+|+|||=+++.-..++ +. |+..|-. +.-.|+|++-+-+- +++.-+.+ +.+ ..+.+..|+|.+.++|
T Consensus 732 lnghvvvclfad~dspliglrnlvmplrasnfhyhelkhvvivgsiey--lrrewktl-~nl--pkisilngsplsradl 806 (1103)
T KOG1420|consen 732 LNGHVVVCLFADVDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSIEY--LRREWKTL-HNL--PKISILNGSPLSRADL 806 (1103)
T ss_pred ecCcEEEEEecCCCCchhhhhhheeeccccccchhheeeEEEEccHHH--HHHHHHHH-hCC--CceeecCCCCCchhhh
Confidence 579999998887533332 22 2221100 11245665554432 22222222 222 3588899999999999
Q ss_pred hccCcccccEEEEecCC----CCCCcchHHHHHHHHHHhhhcC----------------------------------CCC
Q 004087 454 KKVSVSKARAIIVLASD----ENADQSDARALRVVLSLTGVKE----------------------------------GLR 495 (774)
Q Consensus 454 ~rAgI~~A~aVIiltdd----~~~~~sDa~NI~~~Laar~l~p----------------------------------~~~ 495 (774)
+.+++.-+|+++|++.+ .++.-+|.+.+.+.+.+|.+.- +.+
T Consensus 807 ravninlcdmcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp~gspi~lq~~g~~~g~n 886 (1103)
T KOG1420|consen 807 RAVNINLCDMCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSPDGSPIHLQQPGITTGVN 886 (1103)
T ss_pred hhccccccceeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCCCCCCeEEecCCcccccC
Confidence 99999999999999877 2445578889998888886421 122
Q ss_pred ceEEEEecCCCCHHHHHHcCCCe--eEEe------cc----HHHHHHHHH------------HHHcCCcHHHHHHHHhcc
Q 004087 496 GHVVVEMSDLDNEPLVKLVGGEL--IETV------VA----HDVIGRLMI------------QCALQPGLAQIWEDILGF 551 (774)
Q Consensus 496 ~~IIArv~d~e~~~~l~~~Gad~--VevV------~~----~el~a~lLa------------q~~~~Pg~~~Vl~~Ll~~ 551 (774)
.++|.++.+..|.+.+.+-.-|. -|.. |- -.+...+|. +.+...|+..-++-++..
T Consensus 887 vpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnaltlirtlvtggatpelelilae 966 (1103)
T KOG1420|consen 887 VPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTLIRTLVTGGATPELELILAE 966 (1103)
T ss_pred chhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHHHHHHHHHhCCCChhhHHHHhc
Confidence 34566666555555443211110 0000 00 011222333 333333333333222211
Q ss_pred C-----C---------------ceEEeccCC--c-cCCCcHHHHhhh---CCCeEEEEEEEeec---------CCeEEeC
Q 004087 552 E-----N---------------AEFYIKRWP--Q-LDDLRFEEVVIS---FPDAIPCGIKVAAE---------GGKIILN 596 (774)
Q Consensus 552 ~-----g---------------~ei~i~~~p--~-lvGktf~el~~~---~~~~iVIGI~r~~~---------~g~~~ln 596 (774)
+ | .++.+...| . -.|-+++|+.-. ..+..-+|++|-.+ ...++-|
T Consensus 967 gaglrggystpetlsnrdrcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~ygmlciglyrlrd~~~s~~~s~kryvitn 1046 (1103)
T KOG1420|consen 967 GAGLRGGYSTPETLSNRDRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYGMLCIGLYRLRDAHLSTSQSTKRYVITN 1046 (1103)
T ss_pred cccccCCCCChhhhccccceeeeeeeeecCchhhhccCCchHHHHHHHHHHhCceeEEEeeeeccccCcchhhceeEecC
Confidence 0 1 122222333 1 245688887643 25889999987321 1237789
Q ss_pred CCCCceecCCCEEEEEEeCCC
Q 004087 597 PDDNYVLKEGDEVLVIAEDDD 617 (774)
Q Consensus 597 P~~d~vL~~GD~LiVIa~~d~ 617 (774)
|+.+..|.+.|.+|++-.-+.
T Consensus 1047 pp~ef~l~ptd~vfvlmqfdp 1067 (1103)
T KOG1420|consen 1047 PPYEFELVPTDLVFVLMQFDP 1067 (1103)
T ss_pred CchhheecccceEEEEEeeCC
Confidence 999999999999999977553
No 40
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.60 E-value=0.011 Score=58.42 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=60.3
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
...+++|+|+|+.+.+.++.|... +..|++++.+. .++. .++ ..+.+ ..+.++.+++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~--~~~l-~~l------~~i~~------~~~~~~~~dl~~ 70 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEI--CKEM-KEL------PYITW------KQKTFSNDDIKD 70 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCcc--CHHH-Hhc------cCcEE------EecccChhcCCC
Confidence 456899999999999999999864 46777775332 2222 111 11222 356778888999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l 490 (774)
|+.||++|++ |+.|..++..++..
T Consensus 71 a~lViaaT~d------~e~N~~i~~~a~~~ 94 (157)
T PRK06719 71 AHLIYAATNQ------HAVNMMVKQAAHDF 94 (157)
T ss_pred ceEEEECCCC------HHHHHHHHHHHHHC
Confidence 9999999987 99999999988874
No 41
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.21 E-value=0.0064 Score=69.70 Aligned_cols=96 Identities=8% Similarity=0.157 Sum_probs=71.1
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhc---------------cCCCHHHHHHHHHHHhhccCCCCCCCC
Q 004087 272 VAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAV---------------SDSSFAEALWLSWTFVADSGNHADRVG 336 (774)
Q Consensus 272 l~y~ld~~~s~~~~~~~l~Ll~~~l~lil~g~~~~~~i---------------e~~s~~dAly~~~~TltTvGygd~~~t 336 (774)
+...||+.|+..-+.+...-+..++-++=+-+++|||. +|..+..|+||++.|++|+|....|.+
T Consensus 347 ~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~~P~P~~ 426 (815)
T KOG0499|consen 347 FNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGGLPEPQT 426 (815)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcCCCCcch
Confidence 44567777776655544444333444445566666664 246799999999999999999888888
Q ss_pred ccCceeeehhhHhHHHHHHHHHHHHHHHHHH
Q 004087 337 TGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (774)
Q Consensus 337 ~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~ 367 (774)
...-+|..+--+.|+++|+.+||.+=+.+..
T Consensus 427 ~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 427 LFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8778888777789999999999988776654
No 42
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.022 Score=56.35 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=74.5
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
....++++||+|+.|..+++.|... +..+.+++.++ ++.+.+...| . .++.||+++.+.|+.+++
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~~~---~~~~~vi~~~~--~~~~~~~~~~--------~--~~~~gd~~~~~~l~~a~~ 83 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALLAS---GIPVVVIDSDE--DRVELLRELG--------L--LVVLGDATREEVLEAAGI 83 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHHC---CCCEEEEECCH--HHHHHHHHCC--------C--cEEEecCCCHHHHHhcCh
Confidence 4567899999999999999999864 66888888653 6666666532 1 358999999999999999
Q ss_pred CCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhhh
Q 004087 720 ETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRYK 758 (774)
Q Consensus 720 ~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~~ 758 (774)
+.++.+++..++ |..++.....++.+.+..
T Consensus 84 ~~a~~vi~~~~~---------~~~~~~~~~~~~~~~p~~ 113 (212)
T COG1226 84 ERARAVIVTLSD---------DATNVFIVLLARAINPEL 113 (212)
T ss_pred hheeEEEEecCC---------HHHHHHHHHHHHHHCCCC
Confidence 999999999864 346666666667666643
No 43
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.95 E-value=0.017 Score=59.45 Aligned_cols=72 Identities=8% Similarity=0.169 Sum_probs=50.3
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
.++|||+|+|++|...++.|.+. |.+|+||+....++- ..+.+. .. +.+ .++.+++.++..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~---ga~V~VIs~~~~~~l-~~l~~~-------~~--i~~------~~~~~~~~~l~~ 70 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY---GAHIVVISPELTENL-VKLVEE-------GK--IRW------KQKEFEPSDIVD 70 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCeEEEEcCCCCHHH-HHHHhC-------CC--EEE------EecCCChhhcCC
Confidence 46999999999999999988764 899999986543332 223221 11 222 234566778899
Q ss_pred ccEEEEeeCCC
Q 004087 722 FDSILILADES 732 (774)
Q Consensus 722 aD~vIiLtdd~ 732 (774)
+|.||+.|++.
T Consensus 71 adlViaaT~d~ 81 (202)
T PRK06718 71 AFLVIAATNDP 81 (202)
T ss_pred ceEEEEcCCCH
Confidence 99999988763
No 44
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.52 E-value=0.045 Score=56.51 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=51.7
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
.++|+|+|+|+++..-++.|-+. |..|+|++.++.++..+ +.+. . .+.++.|+.... . ++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~---ga~VtVvsp~~~~~l~~-l~~~-------~--~i~~~~~~~~~~-d-----l~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA---GAQLRVIAEELESELTL-LAEQ-------G--GITWLARCFDAD-I-----LEG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHHH-HHHc-------C--CEEEEeCCCCHH-H-----hCC
Confidence 45999999999999999988764 99999999876544333 3331 1 245678877633 2 467
Q ss_pred ccEEEEeeCCC
Q 004087 722 FDSILILADES 732 (774)
Q Consensus 722 aD~vIiLtdd~ 732 (774)
+|.||+.|||.
T Consensus 70 ~~lVi~at~d~ 80 (205)
T TIGR01470 70 AFLVIAATDDE 80 (205)
T ss_pred cEEEEECCCCH
Confidence 88888888763
No 45
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.48 E-value=0.03 Score=63.38 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCCccCceeeehhhHhHHHHHHHHHHHHHHHHHHH
Q 004087 315 AEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (774)
Q Consensus 315 ~dAly~~~~TltTvGygd~~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~~ 368 (774)
.-++||+..|+||.|--..|.+....+|.++=.++|+++||.++|-|.+.+.+.
T Consensus 185 ~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 185 LYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 458999999999999888888889999999999999999999999888887764
No 46
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.047 Score=62.01 Aligned_cols=114 Identities=19% Similarity=0.292 Sum_probs=76.3
Q ss_pred ccEEEEEeCCCCHHHHhccCcccccEEEEecCC---CCCCcchHHHHHHHHHHhhhcCCCC---------ceEEEEecCC
Q 004087 438 TSVICRSGSPLILADLKKVSVSKARAIIVLASD---ENADQSDARALRVVLSLTGVKEGLR---------GHVVVEMSDL 505 (774)
Q Consensus 438 ~~V~~I~Gd~t~~e~L~rAgI~~A~aVIiltdd---~~~~~sDa~NI~~~Laar~l~p~~~---------~~IIArv~d~ 505 (774)
.++++..|+..+.++|.|||+..|..|+++-.- .+++.+|-.++.++.-+..++|.++ ---.++.+-.
T Consensus 762 p~vywm~g~v~~ld~llragvs~ae~vvvvke~a~~aee~tadcntii~vq~~~r~fp~lr~itelt~atnmrf~qf~~h 841 (1087)
T KOG3193|consen 762 PDVYWMKGKVGNLDCLLRAGVSSAEHVVVVKETAVMAEEHTADCNTIITVQKIHRMFPRLRMITELTHATNMRFVQFNPH 841 (1087)
T ss_pred chhhhhhcCcCcHHHHHHhcccccceEEEEehhhhhhhhhccccchhhhHHHHHHhchhHHHHHHHhhhccceEEeecCc
Confidence 468899999999999999999999999998543 2456678888888887777777321 0112333222
Q ss_pred CCHHH----H----HHcCCC--ee-------EEeccHHHHHHHHHHHHcCCcHHHHHHHHhcc
Q 004087 506 DNEPL----V----KLVGGE--LI-------ETVVAHDVIGRLMIQCALQPGLAQIWEDILGF 551 (774)
Q Consensus 506 e~~~~----l----~~~Gad--~V-------evV~~~el~a~lLaq~~~~Pg~~~Vl~~Ll~~ 551 (774)
+...+ + ++-|.. .+ --|-+..+..+++-|+...|-+.++..-|++-
T Consensus 842 ~~ysl~~sr~ekker~rgsh~~~mfrlpfa~g~vfsa~mld~llyqa~ik~~vv~~vrlllgi 904 (1087)
T KOG3193|consen 842 NAYSLAQSRFEKKERKRGSHMPFMFRLPFAQGGVFSANMLDRLLYQAIIKPFVVDLVRLLLGI 904 (1087)
T ss_pred chhHHHHHHHHHHHhhccCCCceEEeccccccceeeHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 11111 1 111210 00 01345677889999999999999999888875
No 47
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.87 E-value=0.12 Score=53.24 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=57.7
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~-e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~ 459 (774)
...+++|+|.|+.+...++.|... +..|++++.+. +++..... ...+.+.. ..++.+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~-------~~~i~~~~------~~~~~~~l~ 69 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVE-------EGKIRWKQ------KEFEPSDIV 69 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHh-------CCCEEEEe------cCCChhhcC
Confidence 356999999999999999999864 35666776543 23343322 12344432 345566778
Q ss_pred cccEEEEecCCCCCCcchHHHHHHHHHHhh
Q 004087 460 KARAIIVLASDENADQSDARALRVVLSLTG 489 (774)
Q Consensus 460 ~A~aVIiltdd~~~~~sDa~NI~~~Laar~ 489 (774)
+|+.||++|++ ++.|..++..++.
T Consensus 70 ~adlViaaT~d------~elN~~i~~~a~~ 93 (202)
T PRK06718 70 DAFLVIAATND------PRVNEQVKEDLPE 93 (202)
T ss_pred CceEEEEcCCC------HHHHHHHHHHHHh
Confidence 99999999977 8888888776643
No 48
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.46 E-value=0.05 Score=64.48 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=51.0
Q ss_pred eEEeccCCccCCCcHHHHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004087 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (774)
Q Consensus 555 ei~i~~~p~lvGktf~el~~~~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~~ 621 (774)
++.+.+.++++|++++|+... .++.++++.| +|+ .+.|+++++|++||+++++++.++..++
T Consensus 418 ~~~V~~~s~~~G~~l~el~lp-~~~~i~~v~R---~g~-~~~p~~~t~L~~GD~l~l~~~~~~l~~l 479 (562)
T PRK05326 418 EYRVPAGSWLVGKALRDLRLP-RGALIALIIR---DGK-LLVPTGSTRLKAGDVLLVLGPERDLPAL 479 (562)
T ss_pred EEEECCCCcccCCCHHHcCCC-CCcEEEEEEE---CCE-EeCCCCCCeECCCCEEEEEECHHHHHHH
Confidence 455666778999999999643 5799999997 455 4799999999999999999998876554
No 49
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.81 E-value=0.1 Score=61.90 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=52.3
Q ss_pred ceEEeccCCccCCCcHHHHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004087 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (774)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~~-~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~~ 621 (774)
..+.+.+.++++|+++.|+..+. .++.+++|+| +++. +.|.++++|++||.+++.|+.+++.++
T Consensus 220 r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R---~g~~-~~p~~dtvL~~GD~L~V~G~~e~L~~l 284 (562)
T TIGR03802 220 RAYRVNRASSLIGKTVGDLENLFAGRVTIERIRR---DGKL-LTVSPDLVLNAGDVVLVVGRRDAVVQF 284 (562)
T ss_pred EEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEE---CCEE-EcCCCCCeeCCCCEEEEEECHHHHHHH
Confidence 34556666789999999998764 5899999987 4655 469999999999999999999877554
No 50
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=93.41 E-value=0.63 Score=45.77 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHhhccCCCCC-CC-----CccCceee-ehhhHhHHHHHHHHHHHH
Q 004087 312 SSFAEALWLSWTFVADSGNHAD-RV-----GTGPRIVS-VSISSGGMLIFAMMLGLV 361 (774)
Q Consensus 312 ~s~~dAly~~~~TltTvGygd~-~~-----t~~gRi~~-v~lil~Gl~ifa~lig~i 361 (774)
.++..|+|+++.++|+.|+|+. +. +..+.++. .++++++++++++++|.+
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 5799999999999999999997 33 55677776 566677778888888764
No 51
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.18 E-value=1.2 Score=46.10 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=59.9
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~-e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
..+++|+|+|..+..-++.|... +..|+|++.+. ++++...+ ..++.++.|+.. .++| ..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~-------~~~i~~~~~~~~-~~dl-----~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAE-------QGGITWLARCFD-ADIL-----EG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHH-------cCCEEEEeCCCC-HHHh-----CC
Confidence 45899999999999989988864 35666665543 34444332 236888888876 4554 56
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l 490 (774)
++.||+.+++ .+.|..++..++..
T Consensus 70 ~~lVi~at~d------~~ln~~i~~~a~~~ 93 (205)
T TIGR01470 70 AFLVIAATDD------EELNRRVAHAARAR 93 (205)
T ss_pred cEEEEECCCC------HHHHHHHHHHHHHc
Confidence 8999999876 56788888777764
No 52
>PRK04972 putative transporter; Provisional
Probab=92.96 E-value=0.12 Score=61.36 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=51.2
Q ss_pred ceEEeccCCccCCCcHHHHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004087 554 AEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (774)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~~ 621 (774)
.|..+.+.++++|++++|+..+.+++.+++|+|. + ..+.|.++++|+.||.|.+.|+.+++.+.
T Consensus 304 ~E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R~---g-~~~~~~~~~~L~~GD~LlVvG~~~~i~~l 367 (558)
T PRK04972 304 TEEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIRS---Q-IEMPIDDNVVLNKGDVLQVSGDARRVKTI 367 (558)
T ss_pred EEEEEEcCcccCCCCHHHhCCccCCeEEEEEecC---C-cccCCCCCCEecCCCEEEEEECHHHHHHH
Confidence 3455566789999999999865468999999973 3 34567789999999999999998876553
No 53
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.63 E-value=0.15 Score=60.44 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=51.5
Q ss_pred ceEEeccCCccCCCcHHHHhhh-----CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004087 554 AEFYIKRWPQLDDLRFEEVVIS-----FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (774)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~-----~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~~ 621 (774)
.|..+.+.++++|++++|+..+ .+++.+.+|+|. |+. +.|.+|++|+.||+|.+.|+.+++.+.
T Consensus 304 ~e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R~---g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~~ 372 (562)
T TIGR03802 304 TKDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKRD---DQP-LPILPETVLQRGDVVTLVGTPQDVDRA 372 (562)
T ss_pred EEEEEECCcccCCccHHHHhccccccccCCeEEEEEeeC---Ccc-ccCCCCCEecCCCEEEEEeCHHHHHHH
Confidence 4445556789999999999854 468999999983 443 478999999999999999999876553
No 54
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.53 E-value=0.61 Score=52.47 Aligned_cols=76 Identities=24% Similarity=0.219 Sum_probs=56.8
Q ss_pred EEEEcccchHHHHHHHHHHhcccCCCCc-eEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004087 385 ILILGWSDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (774)
Q Consensus 385 III~G~g~~~~~li~eL~~~~~~~~~~~-iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~a 463 (774)
|+|+|+|..+..+++.|.... .. .|++.+++.+.++...++. ...++.+++.|..|.+.|+++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-----~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-----PFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-----CE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCC-----CCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 789999988888999887543 23 7999999999888775432 246799999999999998888 888999
Q ss_pred EEEecCC
Q 004087 464 IIVLASD 470 (774)
Q Consensus 464 VIiltdd 470 (774)
||-+++.
T Consensus 71 Vin~~gp 77 (386)
T PF03435_consen 71 VINCAGP 77 (386)
T ss_dssp EEE-SSG
T ss_pred EEECCcc
Confidence 9998864
No 55
>PRK03818 putative transporter; Validated
Probab=92.52 E-value=0.16 Score=60.17 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=50.1
Q ss_pred eEEeccCCccCCCcHHHHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004087 555 EFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (774)
Q Consensus 555 ei~i~~~p~lvGktf~el~~~-~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~ 620 (774)
|..+...++++|++++|+..+ ..++.+.+|+|. | ..+.|.++++|+.||+|.+.|+.+++.+
T Consensus 292 E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R~---g-~~l~~~~d~~Lq~GD~LlVvG~~~~i~~ 354 (552)
T PRK03818 292 ERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNRA---G-VELVASPDLSLQFGDILNLVGRPEAIDA 354 (552)
T ss_pred EEEEEcChhccCCcHHHhcccccCCeEEEEEeEC---C-eecCCCCCCEEecCCEEEEEECHHHHHH
Confidence 444556689999999999865 368999999983 4 3456788999999999999999987654
No 56
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=92.52 E-value=0.12 Score=57.07 Aligned_cols=118 Identities=21% Similarity=0.267 Sum_probs=72.0
Q ss_pred HHHHHhhhhh--hccchhHHHHHHHHHH-HHHHHHHhhhhhhc-------c----C----------CCHHHHHHHHHHHh
Q 004087 270 KRVAYSVDVC--FSVYPYAKLLALLFAT-IFLIIFGGLALYAV-------S----D----------SSFAEALWLSWTFV 325 (774)
Q Consensus 270 ~rl~y~ld~~--~s~~~~~~~l~Ll~~~-l~lil~g~~~~~~i-------e----~----------~s~~dAly~~~~Tl 325 (774)
++.+|--|.| +-.-.|+..+.++.+. ++-+++.+++||.+ + + .+|..||-|++.|=
T Consensus 45 ~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQ 124 (400)
T KOG3827|consen 45 KRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQ 124 (400)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeee
Confidence 3555554443 2223566665555443 34455555555554 1 0 47999999999999
Q ss_pred hccCCCCCCCC---ccCceeeehhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccCeEEEEccc
Q 004087 326 ADSGNHADRVG---TGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWS 391 (774)
Q Consensus 326 tTvGygd~~~t---~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~~l~~lr~G~~~v~~k~HIII~G~g 391 (774)
||+|||-.-.| +.+-+..++-.+.|.++=++++|.+..-+.. -+++.......+|-|||=-+
T Consensus 125 tTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar----PkKRAeTl~FS~~AVI~~RD 189 (400)
T KOG3827|consen 125 TTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR----PKKRAETLIFSDHAVIALRD 189 (400)
T ss_pred eeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----chhhhheeeeccceEEEeeC
Confidence 99999986322 2334445566688888888888877655433 22222234567788887443
No 57
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.51 E-value=0.66 Score=52.43 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=87.8
Q ss_pred CeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004087 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (774)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~ 462 (774)
+.++|+|.|.++..++..|...+ ...|.+.+++++.++++.... ..++.+++-|..+.+.|.++ +.+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-----d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-----DGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHH-HhcCC
Confidence 57999999999999998887643 278999999998888765421 23688999999999999887 56669
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCC----CHHHHHHcCCCeeEEeccHHHHHHHHHHHHcC
Q 004087 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD----NEPLVKLVGGELIETVVAHDVIGRLMIQCALQ 538 (774)
Q Consensus 463 aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e----~~~~l~~~Gad~VevV~~~el~a~lLaq~~~~ 538 (774)
+||.+.+. .-+...+.+|+..+- +.+--..+.+ ..+..+++|... | -.+=..
T Consensus 71 ~VIn~~p~----~~~~~i~ka~i~~gv-------~yvDts~~~~~~~~~~~~a~~Agit~---v----------~~~G~d 126 (389)
T COG1748 71 LVINAAPP----FVDLTILKACIKTGV-------DYVDTSYYEEPPWKLDEEAKKAGITA---V----------LGCGFD 126 (389)
T ss_pred EEEEeCCc----hhhHHHHHHHHHhCC-------CEEEcccCCchhhhhhHHHHHcCeEE---E----------cccCcC
Confidence 99999975 334544455554432 1222222222 334455677542 2 234567
Q ss_pred CcHHHHHHH
Q 004087 539 PGLAQIWED 547 (774)
Q Consensus 539 Pg~~~Vl~~ 547 (774)
||+.+++..
T Consensus 127 PGi~nv~a~ 135 (389)
T COG1748 127 PGITNVLAA 135 (389)
T ss_pred cchHHHHHH
Confidence 888887654
No 58
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.32 E-value=0.68 Score=50.46 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=52.5
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCc
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~a 722 (774)
+|+|.|+ |-+|..+++.|.+ .|.+|+.+..++ ++...+.. .+ +.++.||.+|.+.|.++ ++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~---~g~~V~~l~R~~--~~~~~l~~--------~~--v~~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALD---EGYQVRCLVRNL--RKASFLKE--------WG--AELVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHH---CCCeEEEEEcCh--HHhhhHhh--------cC--CEEEECCCCCHHHHHHH-HCCC
Confidence 6999997 8999999999976 489999998653 22222221 13 34689999999998764 5568
Q ss_pred cEEEEeeC
Q 004087 723 DSILILAD 730 (774)
Q Consensus 723 D~vIiLtd 730 (774)
|+|+-++.
T Consensus 66 d~Vi~~~~ 73 (317)
T CHL00194 66 TAIIDAST 73 (317)
T ss_pred CEEEECCC
Confidence 99888764
No 59
>PLN02366 spermidine synthase
Probab=92.18 E-value=1.3 Score=48.73 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=60.6
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCCh-hHHHHH-hhcCCCCcCCCCCceEEEEecCcccHhhhhcCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~-~er~~~-l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~ 718 (774)
.+++||++|+|.-+ +++++.++ +...+|+++|.++. -+.|+. +.+.+ ..+++-++.+++||+ .+.|++..
T Consensus 91 ~pkrVLiIGgG~G~--~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~---~~~~dpRv~vi~~Da--~~~l~~~~ 162 (308)
T PLN02366 91 NPKKVLVVGGGDGG--VLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLA---VGFDDPRVNLHIGDG--VEFLKNAP 162 (308)
T ss_pred CCCeEEEEcCCccH--HHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhc---cccCCCceEEEEChH--HHHHhhcc
Confidence 47899999998754 45666665 23467999997642 123333 11110 124455677899998 55666554
Q ss_pred CCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 719 LETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 719 I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
-+.||.||+=..+. ... +..|++--..+.+.+.
T Consensus 163 ~~~yDvIi~D~~dp-----~~~-~~~L~t~ef~~~~~~~ 195 (308)
T PLN02366 163 EGTYDAIIVDSSDP-----VGP-AQELFEKPFFESVARA 195 (308)
T ss_pred CCCCCEEEEcCCCC-----CCc-hhhhhHHHHHHHHHHh
Confidence 46899888733221 111 4556665555555443
No 60
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.18 E-value=0.38 Score=47.54 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=54.1
Q ss_pred EEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCcc
Q 004087 645 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (774)
Q Consensus 645 ILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD 723 (774)
|+|+|+ |.+|..++++|.+. |.+|+.+..++ ++.+. . .++ .++.||..|++.+.++ +..+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~---~~~V~~~~R~~--~~~~~--~--------~~~--~~~~~d~~d~~~~~~a-l~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR---GHEVTALVRSP--SKAED--S--------PGV--EIIQGDLFDPDSVKAA-LKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TSEEEEEESSG--GGHHH--C--------TTE--EEEESCTTCHHHHHHH-HTTSS
T ss_pred eEEECCCChHHHHHHHHHHHC---CCEEEEEecCc--hhccc--c--------ccc--ccceeeehhhhhhhhh-hhhcc
Confidence 789998 99999999999764 89999999765 33333 2 244 4689999999888874 45899
Q ss_pred EEEEeeCC
Q 004087 724 SILILADE 731 (774)
Q Consensus 724 ~vIiLtdd 731 (774)
+++.+...
T Consensus 63 ~vi~~~~~ 70 (183)
T PF13460_consen 63 AVIHAAGP 70 (183)
T ss_dssp EEEECCHS
T ss_pred hhhhhhhh
Confidence 99998854
No 61
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.74 E-value=0.69 Score=48.48 Aligned_cols=73 Identities=21% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
..++|||+|||+++..=++.|-+ .|..|+||+....++-.. +.+. .+ +.++..+.. +..++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~-l~~~-------~~--i~~~~r~~~------~~dl~ 84 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLD-LKKY-------GN--LKLIKGNYD------KEFIK 84 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHH-HHhC-------CC--EEEEeCCCC------hHHhC
Confidence 35689999999999776666655 499999999765444333 3321 12 334555442 22346
Q ss_pred CccEEEEeeCCC
Q 004087 721 TFDSILILADES 732 (774)
Q Consensus 721 ~aD~vIiLtdd~ 732 (774)
.++.|++.|||.
T Consensus 85 g~~LViaATdD~ 96 (223)
T PRK05562 85 DKHLIVIATDDE 96 (223)
T ss_pred CCcEEEECCCCH
Confidence 788888888763
No 62
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=91.60 E-value=0.91 Score=44.81 Aligned_cols=69 Identities=26% Similarity=0.181 Sum_probs=54.9
Q ss_pred EEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004087 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (774)
Q Consensus 385 III~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~a 463 (774)
|+|+|. |..|..++++|... ++.|++.-++++..+. ..++.++.||..+++.+.++ +..+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a-l~~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA-LKGADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH-HTTSSE
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc----------ccccccceeeehhhhhhhhh-hhhcch
Confidence 689997 66788899999874 3677777777776553 24689999999999988886 558999
Q ss_pred EEEecCC
Q 004087 464 IIVLASD 470 (774)
Q Consensus 464 VIiltdd 470 (774)
||.+...
T Consensus 64 vi~~~~~ 70 (183)
T PF13460_consen 64 VIHAAGP 70 (183)
T ss_dssp EEECCHS
T ss_pred hhhhhhh
Confidence 9999864
No 63
>PRK03818 putative transporter; Validated
Probab=91.56 E-value=0.28 Score=58.08 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=51.8
Q ss_pred ceEEeccCCccCCCcHHHHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004087 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (774)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~~-~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~~ 621 (774)
.++.+. .++++|+++.|+.... .++.+.+++| ++ ....|.++++|++||.|++.|+.+++.++
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R---~g-~~~~p~~~~~L~~GDiLlV~G~~e~l~~l 270 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKR---GD-TLMVPSPDTIIQLGDLLHLVGQPEDLHKA 270 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEE---CC-EEECCCCCCccCCCCEEEEEECHHHHHHH
Confidence 456666 6779999999998764 5799999987 35 46778899999999999999999876554
No 64
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.46 E-value=0.56 Score=48.54 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=58.4
Q ss_pred EEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCcc
Q 004087 645 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (774)
Q Consensus 645 ILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD 723 (774)
|+|.|+ |..|..+++.|.+ .+.+|+++-.++.+++.+.+.+. ++. ++.||..|.+.|.++ +..+|
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~~--------g~~--vv~~d~~~~~~l~~a-l~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQAL--------GAE--VVEADYDDPESLVAA-LKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHHT--------TTE--EEES-TT-HHHHHHH-HTTCS
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhcc--------cce--EeecccCCHHHHHHH-HcCCc
Confidence 789998 9999999999987 58999999988877777777763 344 479999999999776 77899
Q ss_pred EEEEeeC
Q 004087 724 SILILAD 730 (774)
Q Consensus 724 ~vIiLtd 730 (774)
++++++.
T Consensus 67 ~v~~~~~ 73 (233)
T PF05368_consen 67 AVFSVTP 73 (233)
T ss_dssp EEEEESS
T ss_pred eEEeecC
Confidence 9998886
No 65
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.16 E-value=1.2 Score=49.57 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=55.4
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChh-------------------HHH----HHhhcCCCCcCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK-------------------ERE----KKLTDGGLDISGL 696 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~-------------------er~----~~l~~~g~~~~~l 696 (774)
...+|+|+|.|..|..+++.|.+. |. +++|++.+.-+ -+. +.+.+ --
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~------in 93 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA---GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK------IN 93 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH------HC
Confidence 356899999999999999999874 76 89999875311 011 12222 12
Q ss_pred CCceEEEEecCcccHhhhhcCCCCCccEEEEeeCC
Q 004087 697 MNIKLVHREGNAVIRRHLESLPLETFDSILILADE 731 (774)
Q Consensus 697 ~~i~V~~i~GD~td~~~L~~~~I~~aD~vIiLtdd 731 (774)
+++.+..+.+|.+. +.++++ ++++|.||..+|+
T Consensus 94 p~v~i~~~~~~~~~-~~~~~~-~~~~DlVid~~D~ 126 (338)
T PRK12475 94 SEVEIVPVVTDVTV-EELEEL-VKEVDLIIDATDN 126 (338)
T ss_pred CCcEEEEEeccCCH-HHHHHH-hcCCCEEEEcCCC
Confidence 56777777888764 344444 7889999888864
No 66
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=90.92 E-value=3.4 Score=43.37 Aligned_cols=85 Identities=12% Similarity=0.029 Sum_probs=57.1
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
..+++|+|.|..+.+=++.|.... ..+.|+...-.++++.... ...+.+++.+. .+++| +.|
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g-----A~VtVVap~i~~el~~l~~-------~~~i~~~~r~~-~~~dl-----~g~ 86 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG-----CYVYILSKKFSKEFLDLKK-------YGNLKLIKGNY-DKEFI-----KDK 86 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-----CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCC-ChHHh-----CCC
Confidence 459999999999888788887643 2344444443334544332 23477776554 45665 568
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004087 462 RAIIVLASDENADQSDARALRVVLSLTGV 490 (774)
Q Consensus 462 ~aVIiltdd~~~~~sDa~NI~~~Laar~l 490 (774)
..||++|+| .+.|-.++-.++..
T Consensus 87 ~LViaATdD------~~vN~~I~~~a~~~ 109 (223)
T PRK05562 87 HLIVIATDD------EKLNNKIRKHCDRL 109 (223)
T ss_pred cEEEECCCC------HHHHHHHHHHHHHc
Confidence 999999977 67788888888775
No 67
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.58 E-value=2.9 Score=46.59 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=61.5
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChH---------------------HHHHHHHhhhcccCCcc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e---------------------~le~~l~~~~~~~~~~~ 439 (774)
.+.||+|+|.|..|..+++.|..+.- ..++++|.|.- +.+.+.+++..-.....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence 45699999999999999999987531 36777887741 12221121111112345
Q ss_pred EEEEEeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004087 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (774)
Q Consensus 440 V~~I~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sDa~NI~~~Laar~l~ 491 (774)
+..+.++.+ .+.+++. ++++|.||.++|+ .+....+.-.+++.+
T Consensus 98 i~~~~~~~~-~~~~~~~-~~~~DlVid~~D~------~~~r~~in~~~~~~~ 141 (338)
T PRK12475 98 IVPVVTDVT-VEELEEL-VKEVDLIIDATDN------FDTRLLINDLSQKYN 141 (338)
T ss_pred EEEEeccCC-HHHHHHH-hcCCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 666776665 3445544 6789999999965 555555555565543
No 68
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=90.20 E-value=0.53 Score=52.98 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=54.0
Q ss_pred EEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCcc
Q 004087 645 ILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (774)
Q Consensus 645 ILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD 723 (774)
|+|+|+|.+|..+++.|.+. ... ++++.+.+ .++.+.+.+ .+....+..++-|..|.+.|+++ +..+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~--~~~~~v~va~r~--~~~~~~~~~------~~~~~~~~~~~~d~~~~~~l~~~-~~~~d 69 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR--GPFEEVTVADRN--PEKAERLAE------KLLGDRVEAVQVDVNDPESLAEL-LRGCD 69 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT--TCE-EEEEEESS--HHHHHHHHT--------TTTTEEEEE--TTTHHHHHHH-HTTSS
T ss_pred CEEEcCcHHHHHHHHHHhcC--CCCCcEEEEECC--HHHHHHHHh------hccccceeEEEEecCCHHHHHHH-HhcCC
Confidence 78999999999999999875 233 78888864 577777765 22233456789999999999888 88889
Q ss_pred EEEEeeCC
Q 004087 724 SILILADE 731 (774)
Q Consensus 724 ~vIiLtdd 731 (774)
.||-++..
T Consensus 70 vVin~~gp 77 (386)
T PF03435_consen 70 VVINCAGP 77 (386)
T ss_dssp EEEE-SSG
T ss_pred EEEECCcc
Confidence 99988753
No 69
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.83 E-value=0.34 Score=46.45 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=50.2
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCe-EEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSE-LWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~-v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
..++++|+|.|..+..++..|.+. |.. ++|++. +.+|.+.+++ .+.+..+..+. .+.+. ..+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~---g~~~i~i~nR--t~~ra~~l~~------~~~~~~~~~~~-----~~~~~-~~~ 73 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL---GAKEITIVNR--TPERAEALAE------EFGGVNIEAIP-----LEDLE-EAL 73 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT---TSSEEEEEES--SHHHHHHHHH------HHTGCSEEEEE-----GGGHC-HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEEEC--CHHHHHHHHH------HcCccccceee-----HHHHH-HHH
Confidence 467999999999999999999874 655 999996 4688888886 23222222222 22222 226
Q ss_pred CCccEEEEeeCC
Q 004087 720 ETFDSILILADE 731 (774)
Q Consensus 720 ~~aD~vIiLtdd 731 (774)
.++|.+|..|.-
T Consensus 74 ~~~DivI~aT~~ 85 (135)
T PF01488_consen 74 QEADIVINATPS 85 (135)
T ss_dssp HTESEEEE-SST
T ss_pred hhCCeEEEecCC
Confidence 788988888763
No 70
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.82 E-value=2.1 Score=44.93 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=51.2
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCccc-HhhhhcCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVI-RRHLESLPL 719 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td-~~~L~~~~I 719 (774)
.++|+|+|+ |.+|..+++.|.+ .|.+|+.+..++ ++...+.. . +..+.++.||.+| .+.+.+.=.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~---~g~~V~~~~R~~--~~~~~~~~------~--~~~~~~~~~Dl~d~~~~l~~~~~ 83 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA---KGFAVKAGVRDV--DKAKTSLP------Q--DPSLQIVRADVTEGSDKLVEAIG 83 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh---CCCEEEEEecCH--HHHHHhcc------c--CCceEEEEeeCCCCHHHHHHHhh
Confidence 468999997 8899999999975 488988887543 33333221 1 1124568999998 344543311
Q ss_pred CCccEEEEeeCC
Q 004087 720 ETFDSILILADE 731 (774)
Q Consensus 720 ~~aD~vIiLtdd 731 (774)
..+|.++..+..
T Consensus 84 ~~~d~vi~~~g~ 95 (251)
T PLN00141 84 DDSDAVICATGF 95 (251)
T ss_pred cCCCEEEECCCC
Confidence 468999987653
No 71
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=89.78 E-value=4 Score=47.90 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHhhccCCCC--CC-CCccC------ceeeehhhHhH-HHHHHHH
Q 004087 288 LLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHA--DR-VGTGP------RIVSVSISSGG-MLIFAMM 357 (774)
Q Consensus 288 ~l~Ll~~~l~lil~g~~~~~~ie~~s~~dAly~~~~TltTvGygd--~~-~t~~g------Ri~~v~lil~G-l~ifa~l 357 (774)
.++.+++.+++++++++.+...+..++.++++-++.++.|+|=+- .+ .+..+ +++.++.|+.| +.+++++
T Consensus 399 ~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~l 478 (499)
T COG0168 399 ALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVL 478 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHH
Confidence 355566666777777777766655589999999999999999753 22 23334 77777767666 6666665
Q ss_pred HHH
Q 004087 358 LGL 360 (774)
Q Consensus 358 ig~ 360 (774)
+..
T Consensus 479 v~~ 481 (499)
T COG0168 479 VLF 481 (499)
T ss_pred Hhh
Confidence 554
No 72
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.76 E-value=0.69 Score=58.35 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=59.5
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCe-------------EEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEec
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSE-------------LWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREG 706 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~-------------v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~G 706 (774)
...++|+|+|.|++|...++.|.+. ++.+ |+|.+. +.++++++++ .++++. .+.-
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~~~~--~v~l 634 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIENAE--AVQL 634 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC--CHHHHHHHHH------hcCCCc--eEEe
Confidence 4577999999999999999999763 3333 777765 4577888876 345543 4688
Q ss_pred CcccHhhhhcCCCCCccEEEEeeCC
Q 004087 707 NAVIRRHLESLPLETFDSILILADE 731 (774)
Q Consensus 707 D~td~~~L~~~~I~~aD~vIiLtdd 731 (774)
|.+|.+.|.++ +..+|+||+++-.
T Consensus 635 Dv~D~e~L~~~-v~~~DaVIsalP~ 658 (1042)
T PLN02819 635 DVSDSESLLKY-VSQVDVVISLLPA 658 (1042)
T ss_pred ecCCHHHHHHh-hcCCCEEEECCCc
Confidence 88998888875 4569999999753
No 73
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.69 E-value=0.74 Score=52.03 Aligned_cols=76 Identities=20% Similarity=0.108 Sum_probs=60.4
Q ss_pred ceEEEEcccccHHHHHHHHHHhcCCC-CeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 643 EKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~l~~G-s~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
++|||+|.|.+|..++..|.+. | .+|++.+..+ +.|.++.+.. .. .+..++=|+.|.+.|.++ |.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~---~d~~V~iAdRs~--~~~~~i~~~~-----~~--~v~~~~vD~~d~~al~~l-i~~ 68 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN---GDGEVTIADRSK--EKCARIAELI-----GG--KVEALQVDAADVDALVAL-IKD 68 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC---CCceEEEEeCCH--HHHHHHHhhc-----cc--cceeEEecccChHHHHHH-Hhc
Confidence 5899999999999999999863 5 8999999754 6788776521 11 344578899999999888 777
Q ss_pred ccEEEEeeCC
Q 004087 722 FDSILILADE 731 (774)
Q Consensus 722 aD~vIiLtdd 731 (774)
+|++|.+...
T Consensus 69 ~d~VIn~~p~ 78 (389)
T COG1748 69 FDLVINAAPP 78 (389)
T ss_pred CCEEEEeCCc
Confidence 7999998764
No 74
>PLN02214 cinnamoyl-CoA reductase
Probab=89.61 E-value=1.7 Score=48.09 Aligned_cols=105 Identities=11% Similarity=0.111 Sum_probs=64.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
.++|+|.|+ |-+|..+++.|.+ .|.+|+.+...++......+.+.. ...+ .+.++.||.+|.+.+.++ +.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~---~~~~--~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLE---RGYTVKGTVRNPDDPKNTHLRELE---GGKE--RLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CcCEEEEEeCCchhhhHHHHHHhh---CCCC--cEEEEecCcCChHHHHHH-Hh
Confidence 457999999 8899999999975 489998887643221111121100 0011 244688999999888764 44
Q ss_pred CccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHh
Q 004087 721 TFDSILILADESLEDSIVHSDSRSLATLLLIRDIQ 755 (774)
Q Consensus 721 ~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~ 755 (774)
.+|.||-++.....+....-|.+...+..+++-..
T Consensus 81 ~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~ 115 (342)
T PLN02214 81 GCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAA 115 (342)
T ss_pred cCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999864322222223344445555555444
No 75
>PRK01581 speE spermidine synthase; Validated
Probab=89.48 E-value=3.3 Score=46.55 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=59.0
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCCh-hHHHHHhhcC-CCCcCCCCCceEEEEecCcccHhhhhcC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~-~er~~~l~~~-g~~~~~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
..+++|||+|+| .|..+ +++-++ .+..+|+++|.+|. -+.|+..... .+....+.+-.++++.||+. +.|++.
T Consensus 149 ~~PkrVLIIGgG-dG~tl-relLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~--~fL~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGG-DGLAL-REVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK--EFLSSP 223 (374)
T ss_pred CCCCEEEEECCC-HHHHH-HHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH--HHHHhc
Confidence 346799999987 45444 444444 34578999998652 1233321000 00111344556778999995 566553
Q ss_pred CCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 718 PLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 718 ~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
-+.||.|++=..|. .......+++.-..+.+.+.
T Consensus 224 -~~~YDVIIvDl~DP-----~~~~~~~LyT~EFy~~~~~~ 257 (374)
T PRK01581 224 -SSLYDVIIIDFPDP-----ATELLSTLYTSELFARIATF 257 (374)
T ss_pred -CCCccEEEEcCCCc-----cccchhhhhHHHHHHHHHHh
Confidence 35799888743221 11234566665555555443
No 76
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.08 E-value=0.5 Score=47.05 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=27.8
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
.-++++|+|+|+.|.-+|+.|... |..|+|.|.+|
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~---Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGL---GARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHT---T-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhC---CCEEEEEECCh
Confidence 356899999999999999999875 99999999877
No 77
>PRK04972 putative transporter; Provisional
Probab=88.97 E-value=0.71 Score=54.83 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=45.0
Q ss_pred cCCCcHHHHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004087 564 LDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (774)
Q Consensus 564 lvGktf~el~~~~-~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~~ 621 (774)
+.||+++|+.... .++.+.+|+| +++ ...|.++++|++||+|++.|+.+++.++
T Consensus 228 ~~Gktl~el~~~~~~~v~I~~I~R---~g~-~~~p~~dt~L~~GDiL~V~G~~e~l~~l 282 (558)
T PRK04972 228 TDGKNLRELGIYRQTGCYIERIRR---NGI-LANPDGDAVLQMGDEIALVGYPDAHARL 282 (558)
T ss_pred cCCCCHHHHHhhcCCCEEEEEEEE---CCE-EecCCCCCEeCCCCEEEEEECHHHHHHH
Confidence 3799999998764 5799999987 354 5778999999999999999999876543
No 78
>PRK08267 short chain dehydrogenase; Provisional
Probab=88.80 E-value=1.7 Score=45.51 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=55.2
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--C-
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 718 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~- 718 (774)
++++|.|+ |.+|..+++.|.+ .|..|.+++.++ +..+.+.+ .+++..+.++++|.+|++.++++ +
T Consensus 2 k~vlItGasg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAA---EGWRVGAYDINE--AGLAALAA------ELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 47999998 5679999999976 499999998643 44555543 12233466789999998877642 1
Q ss_pred ----CCCccEEEEeeCC
Q 004087 719 ----LETFDSILILADE 731 (774)
Q Consensus 719 ----I~~aD~vIiLtdd 731 (774)
....|.+|-.++.
T Consensus 71 ~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHcCCCCCEEEECCCC
Confidence 3457999888764
No 79
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.67 E-value=0.43 Score=43.57 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=41.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
..++|+|+|+|+.+..-++.|- ..|.+|++++... +.++ + .++ +..-. ++ ..++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll---~~gA~v~vis~~~--~~~~---~---------~i~--~~~~~------~~-~~l~ 59 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLL---EAGAKVTVISPEI--EFSE---G---------LIQ--LIRRE------FE-EDLD 59 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHC---CCTBEEEEEESSE--HHHH---T---------SCE--EEESS-------G-GGCT
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hCCCEEEEECCch--hhhh---h---------HHH--HHhhh------HH-HHHh
Confidence 3579999999999998777774 4699999999753 1112 1 122 22211 22 4478
Q ss_pred CccEEEEeeCC
Q 004087 721 TFDSILILADE 731 (774)
Q Consensus 721 ~aD~vIiLtdd 731 (774)
.+|.+++.+++
T Consensus 60 ~~~lV~~at~d 70 (103)
T PF13241_consen 60 GADLVFAATDD 70 (103)
T ss_dssp TESEEEE-SS-
T ss_pred hheEEEecCCC
Confidence 89988888765
No 80
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=88.30 E-value=0.63 Score=52.67 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCccCCCcHHHHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004087 561 WPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (774)
Q Consensus 561 ~p~lvGktf~el~~~~~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~ 620 (774)
..+++|+.+++++. .+.+.+.+|.| +| ..+.|.++++|++||.+++++.+.+...
T Consensus 422 ~~~~ig~~lr~l~~-p~~~~~~~v~R---d~-q~i~p~g~t~l~~gD~l~v~~~~~d~~~ 476 (574)
T COG3263 422 DKWCVGAALRNLRM-PKWTRIAAVFR---DG-QLIHPQGSTRLREGDVLCVIGSERDLRA 476 (574)
T ss_pred CCcccchhhhhccC-CccceeeeEEe---cC-ceeccCCCceeecCCEEEEEeccccHHH
Confidence 45789999999863 13578888887 35 4689999999999999999999876544
No 81
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.04 E-value=0.85 Score=46.21 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=50.6
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
.++++|+|+ |.+|..+++.|.+ .|.+|++++.+ .++.+.+.+. +. ...+.. +...|..+.+.+.+. +.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~---~g~~V~l~~R~--~~~~~~l~~~-l~--~~~~~~--~~~~~~~~~~~~~~~-~~ 96 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR---EGARVVLVGRD--LERAQKAADS-LR--ARFGEG--VGAVETSDDAARAAA-IK 96 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEcCC--HHHHHHHHHH-HH--hhcCCc--EEEeeCCCHHHHHHH-Hh
Confidence 468999997 9999999999976 37899999864 4666665541 00 001222 345566676655432 45
Q ss_pred CccEEEEeeC
Q 004087 721 TFDSILILAD 730 (774)
Q Consensus 721 ~aD~vIiLtd 730 (774)
++|.+|..|.
T Consensus 97 ~~diVi~at~ 106 (194)
T cd01078 97 GADVVFAAGA 106 (194)
T ss_pred cCCEEEECCC
Confidence 7787776654
No 82
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.93 E-value=2.8 Score=53.07 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=60.6
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccC--------CCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHH
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSI--------GGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILAD 452 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~--------~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~ 452 (774)
...+|+|+|.|..+...++.|....... .....|+++|.+++..+...+.+ .++..+..|.+|.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHHH
Confidence 3569999999999999998886532100 11235888999988777654421 246678889999999
Q ss_pred HhccCcccccEEEEecCC
Q 004087 453 LKKVSVSKARAIIVLASD 470 (774)
Q Consensus 453 L~rAgI~~A~aVIiltdd 470 (774)
|.++ ++.+|+||++++.
T Consensus 642 L~~~-v~~~DaVIsalP~ 658 (1042)
T PLN02819 642 LLKY-VSQVDVVISLLPA 658 (1042)
T ss_pred HHHh-hcCCCEEEECCCc
Confidence 9876 4569999999975
No 83
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=87.72 E-value=1.4 Score=45.84 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=46.2
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
.++|+|+|+|.++..=++.|.+ .|.+|++++....+|-.....+. + +.++. +.-+.+. +..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~---~ga~v~Vvs~~~~~el~~~~~~~--------~--i~~~~-~~~~~~~-----~~~ 72 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLK---AGADVTVVSPEFEPELKALIEEG--------K--IKWIE-REFDAED-----LDD 72 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---cCCEEEEEcCCccHHHHHHHHhc--------C--cchhh-cccChhh-----hcC
Confidence 4689999999999887777765 59999999976533322222221 1 22333 3333333 334
Q ss_pred ccEEEEeeCCC
Q 004087 722 FDSILILADES 732 (774)
Q Consensus 722 aD~vIiLtdd~ 732 (774)
++.+++.|||.
T Consensus 73 ~~lviaAt~d~ 83 (210)
T COG1648 73 AFLVIAATDDE 83 (210)
T ss_pred ceEEEEeCCCH
Confidence 88888888864
No 84
>PRK00536 speE spermidine synthase; Provisional
Probab=87.67 E-value=1.8 Score=46.52 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=44.2
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCCh-hHHHHH-hhcCCCCcCCCCCceEEEEecCcccHhhhhcC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~-~er~~~-l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
..++||||+|||+.| .++++-++ ..+|+++|-++. =+-|++ +-+.. ..+++-++.++. .+.+.
T Consensus 71 ~~pk~VLIiGGGDGg--~~REvLkh---~~~v~mVeID~~Vv~~~k~~lP~~~---~~~~DpRv~l~~-------~~~~~ 135 (262)
T PRK00536 71 KELKEVLIVDGFDLE--LAHQLFKY---DTHVDFVQADEKILDSFISFFPHFH---EVKNNKNFTHAK-------QLLDL 135 (262)
T ss_pred CCCCeEEEEcCCchH--HHHHHHCc---CCeeEEEECCHHHHHHHHHHCHHHH---HhhcCCCEEEee-------hhhhc
Confidence 457899999999875 46777666 249999997531 122332 11100 134555555554 24454
Q ss_pred CCCCccEEEEe
Q 004087 718 PLETFDSILIL 728 (774)
Q Consensus 718 ~I~~aD~vIiL 728 (774)
.-++||.||+=
T Consensus 136 ~~~~fDVIIvD 146 (262)
T PRK00536 136 DIKKYDLIICL 146 (262)
T ss_pred cCCcCCEEEEc
Confidence 55789988864
No 85
>CHL00194 ycf39 Ycf39; Provisional
Probab=87.62 E-value=4.5 Score=44.03 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=52.3
Q ss_pred CeEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
++|+|+|+ |-.|..++++|... ++.|+...++++..... . ..++.++.||.++++.|.++ ++.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~~~l-~-------~~~v~~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKASFL-K-------EWGAELVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHhhhH-h-------hcCCEEEECCCCCHHHHHHH-HCCC
Confidence 36899997 55688899999863 46777777765443221 1 23578899999999999875 5678
Q ss_pred cEEEEecC
Q 004087 462 RAIIVLAS 469 (774)
Q Consensus 462 ~aVIiltd 469 (774)
|+||-+..
T Consensus 66 d~Vi~~~~ 73 (317)
T CHL00194 66 TAIIDAST 73 (317)
T ss_pred CEEEECCC
Confidence 99888764
No 86
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.48 E-value=2 Score=47.94 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChhH-------------------HH----HHhhcCCCCcCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE-------------------RE----KKLTDGGLDISGL 696 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~e-------------------r~----~~l~~~g~~~~~l 696 (774)
...+|+|+|.|..|..++..|.+. |. ++++++.+.-+. ++ +.+.+ --
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~------in 93 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE------IN 93 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH------HC
Confidence 356899999999999999999864 77 899999753111 11 11111 11
Q ss_pred CCceEEEEecCcccHhhhhcCCCCCccEEEEeeCC
Q 004087 697 MNIKLVHREGNAVIRRHLESLPLETFDSILILADE 731 (774)
Q Consensus 697 ~~i~V~~i~GD~td~~~L~~~~I~~aD~vIiLtdd 731 (774)
+++.+..+.++.+... +.+. +.++|.||..+|+
T Consensus 94 p~v~v~~~~~~~~~~~-~~~~-~~~~DlVid~~Dn 126 (339)
T PRK07688 94 SDVRVEAIVQDVTAEE-LEEL-VTGVDLIIDATDN 126 (339)
T ss_pred CCcEEEEEeccCCHHH-HHHH-HcCCCEEEEcCCC
Confidence 5667777777765433 3333 7789988888764
No 87
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=87.18 E-value=1.1 Score=51.17 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCC-CeEEEEecCChhHHHHHhhc
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~G-s~v~II~~~p~~er~~~l~~ 688 (774)
..+++||+|.|..|..+++.|.+. | ..++|++. ..+|++.|++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~---g~~~i~IaNR--T~erA~~La~ 220 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK---GVKKITIANR--TLERAEELAK 220 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC---CCCEEEEEcC--CHHHHHHHHH
Confidence 456899999999999999999874 6 67888876 4589999886
No 88
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.47 E-value=1.8 Score=51.36 Aligned_cols=86 Identities=14% Similarity=0.013 Sum_probs=57.0
Q ss_pred CCCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhc----CCCC-cCCCCCceEEEEecCcccHhh
Q 004087 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD----GGLD-ISGLMNIKLVHREGNAVIRRH 713 (774)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~----~g~~-~~~l~~i~V~~i~GD~td~~~ 713 (774)
+..+.|+|.|+ |.+|..+++.|.+ .|.+|+++..++ ++.+.+.+ .+++ .+....-.+.++.||.+|.+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk---~G~~Vval~Rn~--ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLK---LGFRVRAGVRSA--QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34568999998 7899999999976 499999987643 44433321 0000 000011235578999999998
Q ss_pred hhcCCCCCccEEEEeeCC
Q 004087 714 LESLPLETFDSILILADE 731 (774)
Q Consensus 714 L~~~~I~~aD~vIiLtdd 731 (774)
++++ +...|.||..++.
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8763 5678988887653
No 89
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=86.30 E-value=5.1 Score=41.36 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=49.5
Q ss_pred EEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChH--HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKE--EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 385 III~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e--~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
|+|+|+ |..|..+++.|... +..|.+.-+++. .... ++ ..++.++.||..+++.|.++ .+.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~-l~-------~~g~~vv~~d~~~~~~l~~a-l~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQ-LQ-------ALGAEVVEADYDDPESLVAA-LKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHH-HH-------HTTTEEEES-TT-HHHHHHH-HTTC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhh-hh-------cccceEeecccCCHHHHHHH-HcCC
Confidence 678887 77899999999873 355555555442 2222 22 24567889999999999776 7899
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
++||.+++.
T Consensus 66 d~v~~~~~~ 74 (233)
T PF05368_consen 66 DAVFSVTPP 74 (233)
T ss_dssp SEEEEESSC
T ss_pred ceEEeecCc
Confidence 999999974
No 90
>PRK07074 short chain dehydrogenase; Provisional
Probab=86.12 E-value=3.6 Score=42.86 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=55.2
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+ .+.+..+..+++|..|++.+.++
T Consensus 3 k~ilItGat~~iG~~la~~L~~---~g~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLA---AGDRVLALDIDA--AALAAFAD------ALGDARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 47899998 6789999999976 489999988654 44444443 22233456789999999877532
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 72 ~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 72 AAERGPVDVLVANAGA 87 (257)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12357988888764
No 91
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=86.08 E-value=2 Score=45.89 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=50.6
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC-
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET- 721 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~- 721 (774)
+|+|.|+ |-+|..+++.|.+. ..+.+|++++......+.+.+.+.. ..++ +.++.||.+|++.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~Dl~~~~~~~~~-~~~~ 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-HPDAEVIVLDKLTYAGNLENLADLE----DNPR--YRFVKGDIGDRELVSRL-FTEH 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-CCCCEEEEecCCCcchhhhhhhhhc----cCCC--cEEEEcCCcCHHHHHHH-Hhhc
Confidence 5899998 78999999999653 1126788776421111222222100 1123 34689999999988765 333
Q ss_pred -ccEEEEeeCC
Q 004087 722 -FDSILILADE 731 (774)
Q Consensus 722 -aD~vIiLtdd 731 (774)
+|.||-++..
T Consensus 73 ~~d~vi~~a~~ 83 (317)
T TIGR01181 73 QPDAVVHFAAE 83 (317)
T ss_pred CCCEEEEcccc
Confidence 8999988753
No 92
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=85.74 E-value=2 Score=46.76 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=71.3
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-CCCC
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PLET 721 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-~I~~ 721 (774)
+|||+|| |=+|...+.+|-+ .|.+|.|++.-..--+.. ++...+.+++||..|++.|.+. .=.+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~---~G~~vvV~DNL~~g~~~~-----------v~~~~~~f~~gDi~D~~~L~~vf~~~~ 67 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLK---TGHEVVVLDNLSNGHKIA-----------LLKLQFKFYEGDLLDRALLTAVFEENK 67 (329)
T ss_pred eEEEecCcchhHHHHHHHHHH---CCCeEEEEecCCCCCHHH-----------hhhccCceEEeccccHHHHHHHHHhcC
Confidence 6899987 7899999999976 599999999743221111 1222135789999999999873 2346
Q ss_pred ccEEEEeeC-----CCCcCCcCCCcHHHHHHHHHHHHHhhhh
Q 004087 722 FDSILILAD-----ESLEDSIVHSDSRSLATLLLIRDIQRYK 758 (774)
Q Consensus 722 aD~vIiLtd-----d~~~~~~~~~Ds~~L~tlLl~r~i~~~~ 758 (774)
.|+||=.+. +|++.+.+-=|.++.-|+-|++-+.+-.
T Consensus 68 idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g 109 (329)
T COG1087 68 IDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG 109 (329)
T ss_pred CCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhC
Confidence 788887665 4455555666888888888888776643
No 93
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=85.70 E-value=4.1 Score=42.35 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=59.2
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
....++|+|.|+.+..=++.|.... ..+.|+.+.-.+++....++ ..+..+. +..+.+.+..
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~g-----a~v~Vvs~~~~~el~~~~~~-------~~i~~~~-~~~~~~~~~~----- 72 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAG-----ADVTVVSPEFEPELKALIEE-------GKIKWIE-REFDAEDLDD----- 72 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC-----CEEEEEcCCccHHHHHHHHh-------cCcchhh-cccChhhhcC-----
Confidence 3458999999998888788887643 34555555544566666543 2355555 5566666655
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l~ 491 (774)
|..||+.|+| .+.|-.+.-.++..+
T Consensus 73 ~~lviaAt~d------~~ln~~i~~~a~~~~ 97 (210)
T COG1648 73 AFLVIAATDD------EELNERIAKAARERR 97 (210)
T ss_pred ceEEEEeCCC------HHHHHHHHHHHHHhC
Confidence 8999999987 566777777777754
No 94
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=85.55 E-value=5.1 Score=43.93 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=53.2
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
++|+|.|+ |-+|..+++.|.+. ..+.+|.+++.++ .....+.+ .+.+..+.++.||.+|++.++++ ++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~-g~~~~V~~~~r~~--~~~~~~~~------~~~~~~~~~v~~Dl~d~~~l~~~-~~~ 74 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLEN-YNPKKIIIYSRDE--LKQWEMQQ------KFPAPCLRFFIGDVRDKERLTRA-LRG 74 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHh-CCCcEEEEEcCCh--hHHHHHHH------HhCCCcEEEEEccCCCHHHHHHH-Hhc
Confidence 57999998 78999999999763 1236788887543 22222222 11112345689999999998764 456
Q ss_pred ccEEEEeeCC
Q 004087 722 FDSILILADE 731 (774)
Q Consensus 722 aD~vIiLtdd 731 (774)
+|.+|-++..
T Consensus 75 iD~Vih~Ag~ 84 (324)
T TIGR03589 75 VDYVVHAAAL 84 (324)
T ss_pred CCEEEECccc
Confidence 8999988763
No 95
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=85.38 E-value=4.3 Score=45.91 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=53.3
Q ss_pred CCCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHH----HHHhhcCCCCcCCCCCceEEEEecCcccHhhh
Q 004087 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER----EKKLTDGGLDISGLMNIKLVHREGNAVIRRHL 714 (774)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er----~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L 714 (774)
....+|+|.|+ |.+|..+++.|.+ .|.+|+++...+..-. ...+.+ ..+++ .++.||.+|.+.+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~---~G~~V~~l~R~~~~~~~~~~~~~~~~------~~~~v--~~v~~Dl~d~~~l 126 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVR---RGYNVVAVAREKSGIRGKNGKEDTKK------ELPGA--EVVFGDVTDADSL 126 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEEechhhccccchhhHHhh------hcCCc--eEEEeeCCCHHHH
Confidence 34568999998 8899999999976 4899999986432110 111111 12343 4689999999988
Q ss_pred hcCC--CC-CccEEEEeeC
Q 004087 715 ESLP--LE-TFDSILILAD 730 (774)
Q Consensus 715 ~~~~--I~-~aD~vIiLtd 730 (774)
+++- +. .+|.||....
T Consensus 127 ~~~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 127 RKVLFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHHHHhCCCCcEEEECCc
Confidence 7642 11 6898886543
No 96
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=85.11 E-value=1.5 Score=37.84 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=28.7
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
||+|+|+|.+|..++..|.+. |.+|++|+..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~---g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL---GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT---TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh---CcEEEEEeccc
Confidence 689999999999999999874 99999999643
No 97
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.09 E-value=4.3 Score=38.60 Aligned_cols=84 Identities=14% Similarity=0.165 Sum_probs=49.7
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChhH----HHHHh--hcCCCC---------cCCCCCceEEEEe
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE----REKKL--TDGGLD---------ISGLMNIKLVHRE 705 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~e----r~~~l--~~~g~~---------~~~l~~i~V~~i~ 705 (774)
..+|+|+|.|..|..+++.|... |. +++|++.+.-++ |.... .+.|.. ....+++.+..+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~---Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS---GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH---TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHh---CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 35899999999999999999874 65 799999653221 11000 011100 0023567776666
Q ss_pred cCcccHhhhhcCCCCCccEEEEeeC
Q 004087 706 GNAVIRRHLESLPLETFDSILILAD 730 (774)
Q Consensus 706 GD~td~~~L~~~~I~~aD~vIiLtd 730 (774)
.+.+ .+.+.+. ++.+|.+|..+|
T Consensus 79 ~~~~-~~~~~~~-~~~~d~vi~~~d 101 (135)
T PF00899_consen 79 EKID-EENIEEL-LKDYDIVIDCVD 101 (135)
T ss_dssp SHCS-HHHHHHH-HHTSSEEEEESS
T ss_pred cccc-ccccccc-ccCCCEEEEecC
Confidence 6663 3333332 378897777654
No 98
>PLN02823 spermine synthase
Probab=85.07 E-value=4 Score=45.48 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=47.9
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcC-CCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~-g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
.+++|||+|+|.- . +++++-++ .+..+++++|.+| +-.+...+. +.....+.+-.++++.||+ ++.|++. -
T Consensus 103 ~pk~VLiiGgG~G-~-~~re~l~~-~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da--~~~L~~~-~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEG-S-TAREVLRH-KTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDA--RAELEKR-D 174 (336)
T ss_pred CCCEEEEECCCch-H-HHHHHHhC-CCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChh--HHHHhhC-C
Confidence 4679999998844 3 34444443 2346799999864 322222221 0111124456677899999 5677553 4
Q ss_pred CCccEEEEe
Q 004087 720 ETFDSILIL 728 (774)
Q Consensus 720 ~~aD~vIiL 728 (774)
++||.|++=
T Consensus 175 ~~yDvIi~D 183 (336)
T PLN02823 175 EKFDVIIGD 183 (336)
T ss_pred CCccEEEec
Confidence 789987764
No 99
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=85.07 E-value=2.9 Score=44.99 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=51.6
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCc
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~a 722 (774)
+|+|.|+ |-+|..+++.|.+ .|.+|+.+...+.. ... +....+.++.||.+|.+.++++ ++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~---~g~~V~~~~r~~~~--~~~----------~~~~~~~~~~~D~~~~~~l~~~-~~~~ 65 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLE---QGEEVRVLVRPTSD--RRN----------LEGLDVEIVEGDLRDPASLRKA-VAGC 65 (328)
T ss_pred eEEEECCccchhHHHHHHHHH---CCCEEEEEEecCcc--ccc----------cccCCceEEEeeCCCHHHHHHH-HhCC
Confidence 6899997 8899999999976 48999999865422 111 1122345789999999888764 4567
Q ss_pred cEEEEeeC
Q 004087 723 DSILILAD 730 (774)
Q Consensus 723 D~vIiLtd 730 (774)
|.++-++.
T Consensus 66 d~vi~~a~ 73 (328)
T TIGR03466 66 RALFHVAA 73 (328)
T ss_pred CEEEEece
Confidence 88887764
No 100
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=84.72 E-value=1.5 Score=43.17 Aligned_cols=77 Identities=25% Similarity=0.235 Sum_probs=46.2
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCcc
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD 723 (774)
+|.|||+|.-|..++..|.. .|.+|++...+ ++..+.+.+.+.....+++..+ ..+..--..|++ -++++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~---~g~~V~l~~~~--~~~~~~i~~~~~n~~~~~~~~l---~~~i~~t~dl~~-a~~~ad 71 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD---NGHEVTLWGRD--EEQIEEINETRQNPKYLPGIKL---PENIKATTDLEE-ALEDAD 71 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH---CTEEEEEETSC--HHHHHHHHHHTSETTTSTTSBE---ETTEEEESSHHH-HHTT-S
T ss_pred CEEEECcCHHHHHHHHHHHH---cCCEEEEEecc--HHHHHHHHHhCCCCCCCCCccc---CcccccccCHHH-HhCccc
Confidence 68999999999999999987 48999999864 4666666653322222343322 111111122322 246778
Q ss_pred EEEEee
Q 004087 724 SILILA 729 (774)
Q Consensus 724 ~vIiLt 729 (774)
.+|+.+
T Consensus 72 ~Iiiav 77 (157)
T PF01210_consen 72 IIIIAV 77 (157)
T ss_dssp EEEE-S
T ss_pred EEEecc
Confidence 777665
No 101
>PRK10637 cysG siroheme synthase; Provisional
Probab=84.52 E-value=3.3 Score=48.04 Aligned_cols=72 Identities=17% Similarity=0.017 Sum_probs=47.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
..++|||+|+|+++..=++.|.+ .|..|+||+..-.+|-.+ +.+. .+ +.++..+... ..++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~---~ga~v~visp~~~~~~~~-l~~~-------~~--i~~~~~~~~~------~dl~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLD---AGARLTVNALAFIPQFTA-WADA-------GM--LTLVEGPFDE------SLLD 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHH-HHhC-------CC--EEEEeCCCCh------HHhC
Confidence 35799999999998876676655 499999999754444333 2221 12 3455655532 2346
Q ss_pred CccEEEEeeCC
Q 004087 721 TFDSILILADE 731 (774)
Q Consensus 721 ~aD~vIiLtdd 731 (774)
.++.+++.|||
T Consensus 72 ~~~lv~~at~d 82 (457)
T PRK10637 72 TCWLAIAATDD 82 (457)
T ss_pred CCEEEEECCCC
Confidence 77877787776
No 102
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.47 E-value=1.8 Score=49.59 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=49.6
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHH---HHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKERE---KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~---~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~ 718 (774)
.++++|+|.|+.|..+++.|.+. |.+|++++..+.+... +.+.+. ++ ..+.+|..+. .
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~---G~~V~~~d~~~~~~~~~~~~~l~~~--------~~--~~~~~~~~~~------~ 65 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL---GAKVILTDEKEEDQLKEALEELGEL--------GI--ELVLGEYPEE------F 65 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCchHHHHHHHHHHHhc--------CC--EEEeCCcchh------H
Confidence 47899999999999999999864 9999999975422221 222221 23 3467887762 3
Q ss_pred CCCccEEEEeeCC
Q 004087 719 LETFDSILILADE 731 (774)
Q Consensus 719 I~~aD~vIiLtdd 731 (774)
.+.+|.+|+-++.
T Consensus 66 ~~~~d~vv~~~g~ 78 (450)
T PRK14106 66 LEGVDLVVVSPGV 78 (450)
T ss_pred hhcCCEEEECCCC
Confidence 4678988887764
No 103
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.24 E-value=4.4 Score=42.81 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=54.2
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA----- 456 (774)
.+++|+|.+. .+..++++|.+ .+..|+++.++++..+...+.......+.++.++.+|.++++.+++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 77 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAK------KGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK 77 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHh------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 4789999765 58888888875 24778888887766555433221100124688899999999987651
Q ss_pred CcccccEEEEecCC
Q 004087 457 SVSKARAIIVLASD 470 (774)
Q Consensus 457 gI~~A~aVIiltdd 470 (774)
.....+.+|-++..
T Consensus 78 ~~~~id~vv~~ag~ 91 (280)
T PRK06914 78 EIGRIDLLVNNAGY 91 (280)
T ss_pred hcCCeeEEEECCcc
Confidence 12345888887754
No 104
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.22 E-value=12 Score=37.71 Aligned_cols=79 Identities=18% Similarity=0.058 Sum_probs=53.6
Q ss_pred cCeEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 382 k~HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
..+++|+|+ |..+..+++.|... +..|+++.++++..+...+++.. ..+..+...+..+.+++.++ +.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~-~~~ 97 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRA---RFGEGVGAVETSDDAARAAA-IKG 97 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHh---hcCCcEEEeeCCCHHHHHHH-Hhc
Confidence 468999997 87788888888752 35788888888776665443211 11233456677788777643 468
Q ss_pred ccEEEEecCC
Q 004087 461 ARAIIVLASD 470 (774)
Q Consensus 461 A~aVIiltdd 470 (774)
||.||..++.
T Consensus 98 ~diVi~at~~ 107 (194)
T cd01078 98 ADVVFAAGAA 107 (194)
T ss_pred CCEEEECCCC
Confidence 8988888765
No 105
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=83.98 E-value=4.2 Score=46.08 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=32.2
Q ss_pred cCCCHHHHHHHHHHHhhccCCC--C-CC-CCccCceeeehhhHhH
Q 004087 310 SDSSFAEALWLSWTFVADSGNH--A-DR-VGTGPRIVSVSISSGG 350 (774)
Q Consensus 310 e~~s~~dAly~~~~TltTvGyg--d-~~-~t~~gRi~~v~lil~G 350 (774)
.+.++.++++-++..+.|+|.+ . .+ -+..+|++.+++|+.|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 4799999999999999999964 3 23 4567888877777665
No 106
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=83.51 E-value=2.8 Score=41.85 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=40.2
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
-.+++|||||..+..+++.|+.. +..|.+.|.||-..-++..+ + +.+. .++++ +.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~alqA~~d------G--f~v~--------~~~~a-~~~a 79 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIRALQAAMD------G--FEVM--------TLEEA-LRDA 79 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHHHHHHHHT------T---EEE---------HHHH-TTT-
T ss_pred CCEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHHHHHhhhc------C--cEec--------CHHHH-HhhC
Confidence 45799999999999999999863 57899999999653333221 2 2222 24443 5689
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
|.||..|..
T Consensus 80 di~vtaTG~ 88 (162)
T PF00670_consen 80 DIFVTATGN 88 (162)
T ss_dssp SEEEE-SSS
T ss_pred CEEEECCCC
Confidence 988888875
No 107
>PRK07326 short chain dehydrogenase; Provisional
Probab=83.37 E-value=5.3 Score=40.88 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=53.7
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCC-ceEEEEecCcccHhhhhcC--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMN-IKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~-i~V~~i~GD~td~~~L~~~-- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+ .+.. ..+.++.+|.+|++.+++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~---~g~~V~~~~r~~--~~~~~~~~------~l~~~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLA---EGYKVAITARDQ--KELEEAAA------ELNNKGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEeeCCH--HHHHHHHH------HHhccCcEEEEEccCCCHHHHHHHHH
Confidence 367999997 7789999999975 489999998654 33333332 1110 2355689999999877541
Q ss_pred ----CCCCccEEEEeeCC
Q 004087 718 ----PLETFDSILILADE 731 (774)
Q Consensus 718 ----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 75 ~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 12467888877653
No 108
>PLN02583 cinnamoyl-CoA reductase
Probab=83.10 E-value=7.5 Score=41.93 Aligned_cols=106 Identities=8% Similarity=-0.058 Sum_probs=61.5
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHH-HHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKERE-KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~-~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
.++|+|.|+ |.+|..+++.|.+ .|.+|+++..++.++.. +.+.+. . . .+-.+..+.||.+|.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~---~G~~V~~~~R~~~~~~~~~~~~~l--~--~-~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLS---RGYTVHAAVQKNGETEIEKEIRGL--S--C-EEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh---CCCEEEEEEcCchhhhHHHHHHhc--c--c-CCCceEEEEecCCCHHHHHHH-H
Confidence 457999998 6799999999975 59999988753322222 122210 0 0 011244678999999888654 4
Q ss_pred CCccEEEEeeCCCCcCC---cCCCcHHHHHHHHHHHHHhh
Q 004087 720 ETFDSILILADESLEDS---IVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 720 ~~aD~vIiLtdd~~~~~---~~~~Ds~~L~tlLl~r~i~~ 756 (774)
..+|.++-+.+...+.. .+.-+.+...+..+++-..+
T Consensus 77 ~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 116 (297)
T PLN02583 77 KGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQ 116 (297)
T ss_pred cCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 56787775433211101 11223445556666665543
No 109
>PRK09186 flagellin modification protein A; Provisional
Probab=83.07 E-value=5 Score=41.63 Aligned_cols=81 Identities=23% Similarity=0.196 Sum_probs=52.7
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
.+.++|.|.+. .+..++++|.+. +..|+++.++++..+...++....+.+..+.++.+|.++++.++++--
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA------GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHH
Confidence 35789999865 578889999753 467888888777666554433211223346677899999888766411
Q ss_pred ----ccccEEEEec
Q 004087 459 ----SKARAIIVLA 468 (774)
Q Consensus 459 ----~~A~aVIilt 468 (774)
..-|.+|-++
T Consensus 78 ~~~~~~id~vi~~A 91 (256)
T PRK09186 78 AEKYGKIDGAVNCA 91 (256)
T ss_pred HHHcCCccEEEECC
Confidence 1246777665
No 110
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.99 E-value=2.7 Score=47.39 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=47.8
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
..+|+|+|.|..|...++.+.+. |.+|++++.++ +|.+.+.+. +.. . +..+..+.+.|.+. +.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d~~~--~~~~~l~~~------~g~-~---v~~~~~~~~~l~~~-l~~ 230 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL---GATVTILDINI--DRLRQLDAE------FGG-R---IHTRYSNAYEIEDA-VKR 230 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC---CCeEEEEECCH--HHHHHHHHh------cCc-e---eEeccCCHHHHHHH-Hcc
Confidence 45699999999999999999864 88999998654 666665431 111 1 12233445555544 567
Q ss_pred ccEEEEee
Q 004087 722 FDSILILA 729 (774)
Q Consensus 722 aD~vIiLt 729 (774)
+|.+|..+
T Consensus 231 aDvVI~a~ 238 (370)
T TIGR00518 231 ADLLIGAV 238 (370)
T ss_pred CCEEEEcc
Confidence 88777654
No 111
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.86 E-value=2.2 Score=46.67 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=58.1
Q ss_pred ceEEEEcccccHHHHHHHHHHhcCCC--CeEEEEecCChhHHHHHhhcCCCC-cC--CCCCceEEEEecCcccHhhhhcC
Q 004087 643 EKILFCGWRRDIDDMIMVLEAFLAPG--SELWMLNEVPEKEREKKLTDGGLD-IS--GLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~l~~G--s~v~II~~~p~~er~~~l~~~g~~-~~--~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
++|.|+|.|.+|..++..|... | .++.+++.++ ++++.++. .+. .. ...+..+ ..+ +.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~---g~~~ei~l~D~~~--~~~~~~a~-dL~~~~~~~~~~~~i--~~~---~~~----- 64 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ---GIADELVLIDINE--EKAEGEAL-DLEDALAFLPSPVKI--KAG---DYS----- 64 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc---CCCCEEEEEeCCc--chhhHhHh-hHHHHhhccCCCeEE--EcC---CHH-----
Confidence 3799999999999999998753 5 6899999754 44444432 110 00 0112221 222 222
Q ss_pred CCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 718 PLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 718 ~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
.+.++|.+|+.++.... +.+.++...-...-+++++.++
T Consensus 65 ~l~~aDIVIitag~~~~-~g~~R~dll~~N~~i~~~~~~~ 103 (306)
T cd05291 65 DCKDADIVVITAGAPQK-PGETRLDLLEKNAKIMKSIVPK 103 (306)
T ss_pred HhCCCCEEEEccCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 24789999999875421 2344555555566666666664
No 112
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.76 E-value=6.1 Score=40.58 Aligned_cols=102 Identities=10% Similarity=0.086 Sum_probs=61.7
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
..+++|.|+|..+..+++.|... |..|+++|.+++.++...+.+ +..++ + .+.+ ...++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~-------g~~~v--~---~~~l---~~~~~ 86 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELF-------GATVV--A---PEEI---YSVDA 86 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHc-------CCEEE--c---chhh---ccccC
Confidence 35799999999999999998753 578889999887766554321 22222 1 1222 22368
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEE-ecC----CCCHHHHHHcCCC
Q 004087 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVE-MSD----LDNEPLVKLVGGE 517 (774)
Q Consensus 462 ~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIAr-v~d----~e~~~~l~~~Gad 517 (774)
|.++-++-. ++...-.++++.. ++|++ .++ ++..+.|+.-|+.
T Consensus 87 Dv~vp~A~~---------~~I~~~~~~~l~~----~~v~~~AN~~~~~~~~~~~L~~~Gi~ 134 (200)
T cd01075 87 DVFAPCALG---------GVINDDTIPQLKA----KAIAGAANNQLADPRHGQMLHERGIL 134 (200)
T ss_pred CEEEecccc---------cccCHHHHHHcCC----CEEEECCcCccCCHhHHHHHHHCCCE
Confidence 888866532 2333333455542 34544 444 4556677777764
No 113
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=82.73 E-value=3 Score=44.35 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=57.9
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChh-HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~-er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
.+++|||+|+|.-+ +++++.++ .+-.+++++|.+|.= +-|++.-. .....+.+-+++++.+|+ ...|++..-
T Consensus 76 ~p~~VLiiGgG~G~--~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~--~~~~~~~d~r~~i~~~Dg--~~~l~~~~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGG--TARELLKH-PPVESITVVEIDPEVVELARKYFP--EFSEGLDDPRVRIIIGDG--RKFLKETQE 148 (246)
T ss_dssp ST-EEEEEESTTSH--HHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTH--HHHTTGGSTTEEEEESTH--HHHHHTSSS
T ss_pred CcCceEEEcCCChh--hhhhhhhc-CCcceEEEEecChHHHHHHHHhch--hhccccCCCceEEEEhhh--HHHHHhccC
Confidence 68899999988764 35666554 234689999976421 22222110 000114455667799999 777877554
Q ss_pred CCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 720 ETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 720 ~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
++||.||+=..+.. .... .+++.-..+.+.+.
T Consensus 149 ~~yDvIi~D~~dp~-----~~~~-~l~t~ef~~~~~~~ 180 (246)
T PF01564_consen 149 EKYDVIIVDLTDPD-----GPAP-NLFTREFYQLCKRR 180 (246)
T ss_dssp T-EEEEEEESSSTT-----SCGG-GGSSHHHHHHHHHH
T ss_pred CcccEEEEeCCCCC-----CCcc-cccCHHHHHHHHhh
Confidence 49998887544321 1111 16665555555443
No 114
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=82.69 E-value=5.4 Score=44.51 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCC-----CCcCCCCCceEEEEecCcccHhhh
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-----LDISGLMNIKLVHREGNAVIRRHL 714 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g-----~~~~~l~~i~V~~i~GD~td~~~L 714 (774)
+..++++|+|||+. . -+++|.+| +.--+|+.+|-+| + .-+++.+. ...+.+.+.+|.+++.|+ -..|
T Consensus 288 ~~a~~vLvlGGGDG-L-AlRellky-P~~~qI~lVdLDP--~-miela~~~~vlr~~N~~sf~dpRv~Vv~dDA--f~wl 359 (508)
T COG4262 288 RGARSVLVLGGGDG-L-ALRELLKY-PQVEQITLVDLDP--R-MIELASHATVLRALNQGSFSDPRVTVVNDDA--FQWL 359 (508)
T ss_pred cccceEEEEcCCch-H-HHHHHHhC-CCcceEEEEecCH--H-HHHHhhhhhHhhhhccCCccCCeeEEEeccH--HHHH
Confidence 67889999998765 3 46677766 2245799999876 2 22232211 234467788888999998 5567
Q ss_pred hcCCCCCccEEEEe
Q 004087 715 ESLPLETFDSILIL 728 (774)
Q Consensus 715 ~~~~I~~aD~vIiL 728 (774)
+...- .||.+|+=
T Consensus 360 r~a~~-~fD~vIVD 372 (508)
T COG4262 360 RTAAD-MFDVVIVD 372 (508)
T ss_pred Hhhcc-cccEEEEe
Confidence 76544 99998883
No 115
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=82.49 E-value=5.3 Score=43.03 Aligned_cols=82 Identities=23% Similarity=0.195 Sum_probs=60.6
Q ss_pred ccCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004087 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (774)
Q Consensus 381 ~k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~ 459 (774)
...+++|.|+.. .|..++++|.. +++.++|+-++++.++++.+++.... +-.+.++.-|.++++++++.--+
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~------~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLAR------RGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHH------CCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHH
Confidence 456999999986 57888999975 46899999999999888877653332 45678899999999888875432
Q ss_pred ------cccEEEEecC
Q 004087 460 ------KARAIIVLAS 469 (774)
Q Consensus 460 ------~A~aVIiltd 469 (774)
.-|.+|-.++
T Consensus 78 l~~~~~~IdvLVNNAG 93 (265)
T COG0300 78 LKERGGPIDVLVNNAG 93 (265)
T ss_pred HHhcCCcccEEEECCC
Confidence 3445554444
No 116
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.37 E-value=16 Score=40.81 Aligned_cols=98 Identities=17% Similarity=0.072 Sum_probs=58.3
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChH---------------------HHHHHHHhhhcccCCcc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e---------------------~le~~l~~~~~~~~~~~ 439 (774)
.+-+|+|+|.|..|..++..|..+. -..+.++|.|.- +.+.+.+++..-.....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-----vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~ 97 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-----VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVR 97 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-----CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcE
Confidence 4679999999999999999998753 136778887731 11111111100011234
Q ss_pred EEEEEeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004087 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (774)
Q Consensus 440 V~~I~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sDa~NI~~~Laar~l~ 491 (774)
+..+.++.+. +.+... ++++|.||.++++ .+......-.+++.+
T Consensus 98 v~~~~~~~~~-~~~~~~-~~~~DlVid~~Dn------~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 98 VEAIVQDVTA-EELEEL-VTGVDLIIDATDN------FETRFIVNDAAQKYG 141 (339)
T ss_pred EEEEeccCCH-HHHHHH-HcCCCEEEEcCCC------HHHHHHHHHHHHHhC
Confidence 5666666543 333333 6789999999865 455555555555543
No 117
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.27 E-value=3.6 Score=39.43 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=48.6
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChhH----HHHHh--hcCCCC---------cCCCCCceEEEEecC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE----REKKL--TDGGLD---------ISGLMNIKLVHREGN 707 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~e----r~~~l--~~~g~~---------~~~l~~i~V~~i~GD 707 (774)
+|+|+|.|..|..+++.|... |. ++++++.+.-++ |.... .+.|.. ....+++.+..+..+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~---Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS---GVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 589999999999999999863 66 699998642211 11111 011100 001246777666666
Q ss_pred cccHhhhhcCCCCCccEEEEeeC
Q 004087 708 AVIRRHLESLPLETFDSILILAD 730 (774)
Q Consensus 708 ~td~~~L~~~~I~~aD~vIiLtd 730 (774)
...... ..-+..+|.+|..+|
T Consensus 78 ~~~~~~--~~~~~~~diVi~~~d 98 (143)
T cd01483 78 ISEDNL--DDFLDGVDLVIDAID 98 (143)
T ss_pred cChhhH--HHHhcCCCEEEECCC
Confidence 554332 233568887776654
No 118
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=82.18 E-value=5.2 Score=42.56 Aligned_cols=85 Identities=7% Similarity=0.039 Sum_probs=55.5
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
+.-+++|+|+|.++..+++..... |++|++++..+ + ...+ ..++++.. ++..++ .+.+.. +.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~l---Gf~V~v~D~R~--~---~~~~-----~~~~~~~~-~~~~~~--~~~~~~--~~ 160 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPL---PCRVTWVDSRE--A---EFPE-----DLPDGVAT-LVTDEP--EAEVAE--AP 160 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcC---CCEEEEEeCCc--c---cccc-----cCCCCceE-EecCCH--HHHHhc--CC
Confidence 455899999999999999988764 99999999654 2 1221 13344432 344443 344443 45
Q ss_pred CccEEEEeeCCCCcCCcCCCcHHHHHHHH
Q 004087 721 TFDSILILADESLEDSIVHSDSRSLATLL 749 (774)
Q Consensus 721 ~aD~vIiLtdd~~~~~~~~~Ds~~L~tlL 749 (774)
.-|.+|++|-+ ..-|...|..+|
T Consensus 161 ~~t~vvi~th~------h~~D~~~L~~aL 183 (246)
T TIGR02964 161 PGSYFLVLTHD------HALDLELCHAAL 183 (246)
T ss_pred CCcEEEEEeCC------hHHHHHHHHHHH
Confidence 66788888854 345777776666
No 119
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=81.96 E-value=13 Score=38.34 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=53.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc----
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~---- 716 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+.++-.+.+.+ + +..+..+.+|.++++.+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~---~G~~vi~~~r~~~~~~~~~~~~-------~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAE---AGADIVGAGRSEPSETQQQVEA-------L-GRRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHHh-------c-CCceEEEECCCCCHHHHHHHHHH
Confidence 468999998 5789999999986 4999999886432222233322 1 1234568999999987752
Q ss_pred --CCCCCccEEEEeeCC
Q 004087 717 --LPLETFDSILILADE 731 (774)
Q Consensus 717 --~~I~~aD~vIiLtdd 731 (774)
......|.+|-.++.
T Consensus 74 ~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 74 AVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 223568988887754
No 120
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.95 E-value=2.3 Score=46.72 Aligned_cols=72 Identities=22% Similarity=0.143 Sum_probs=48.8
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
...+|+|+|.|.+|..+++.|... .+..|++++.+ .+|.+.+++ ++.. .+ .+.+.+.+. +.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~--g~~~V~v~~r~--~~ra~~la~------~~g~-~~-------~~~~~~~~~-l~ 237 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK--GVAEITIANRT--YERAEELAK------ELGG-NA-------VPLDELLEL-LN 237 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCC--HHHHHHHHH------HcCC-eE-------EeHHHHHHH-Hh
Confidence 356899999999999999999752 24688889864 477777765 2221 11 122234333 56
Q ss_pred CccEEEEeeCC
Q 004087 721 TFDSILILADE 731 (774)
Q Consensus 721 ~aD~vIiLtdd 731 (774)
++|.+|..|..
T Consensus 238 ~aDvVi~at~~ 248 (311)
T cd05213 238 EADVVISATGA 248 (311)
T ss_pred cCCEEEECCCC
Confidence 78999998864
No 121
>PRK06194 hypothetical protein; Provisional
Probab=81.94 E-value=5 Score=42.62 Aligned_cols=81 Identities=10% Similarity=0.024 Sum_probs=54.3
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC---
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~--- 718 (774)
+++||.|+ |.+|..+++.|.+ .|..|++++..+ +..+.+.+. + .-.+..+.++.+|.+|.+.++++-
T Consensus 7 k~vlVtGasggIG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-~---~~~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAA---LGMKLVLADVQQ--DALDRAVAE-L---RAQGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHH---CCCEEEEEeCCh--HHHHHHHHH-H---HhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 57999998 5789999999976 499999988643 222222210 0 001334567899999998886531
Q ss_pred ---CCCccEEEEeeCCC
Q 004087 719 ---LETFDSILILADES 732 (774)
Q Consensus 719 ---I~~aD~vIiLtdd~ 732 (774)
....|.+|-.++..
T Consensus 78 ~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 78 LERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 23569999888753
No 122
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=81.90 E-value=4.5 Score=38.70 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=52.8
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
...+++|+|.|..+..++..|...+ -..|.++.++.+..+.+.+.+ .+..+.++. .+++. ..+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g-----~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-----~~~~~-~~~~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG-----AKEITIVNRTPERAEALAEEF----GGVNIEAIP-----LEDLE-EALQE 75 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT-----SSEEEEEESSHHHHHHHHHHH----TGCSEEEEE-----GGGHC-HHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHc----Cccccceee-----HHHHH-HHHhh
Confidence 4679999999999999999998642 256889999998888776643 223344432 23333 23668
Q ss_pred ccEEEEecCC
Q 004087 461 ARAIIVLASD 470 (774)
Q Consensus 461 A~aVIiltdd 470 (774)
||.||.+|+-
T Consensus 76 ~DivI~aT~~ 85 (135)
T PF01488_consen 76 ADIVINATPS 85 (135)
T ss_dssp ESEEEE-SST
T ss_pred CCeEEEecCC
Confidence 9999999875
No 123
>PRK07024 short chain dehydrogenase; Provisional
Probab=81.86 E-value=11 Score=39.38 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=53.5
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCc-eEEEEecCcccHhhhhcC---
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNI-KLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i-~V~~i~GD~td~~~L~~~--- 717 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+ .++.. .+.++.+|.+|++.++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~i~~~~~~ 71 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYAR---QGATLGLVARRT--DALQAFAA------RLPKAARVSVYAADVRDADALAAAAAD 71 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------hcccCCeeEEEEcCCCCHHHHHHHHHH
Confidence 57999996 5689999999976 489999998653 44444433 11111 456789999998877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 72 ~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 72 FIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHhCCCCCEEEECCCc
Confidence 12356888887653
No 124
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.73 E-value=8.3 Score=42.34 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=70.4
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
...+++|+|.|..+..+++.|... +...|++++++++..+...+++ +. .+ .+.+++.++ +.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~-----g~~~V~v~~r~~~ra~~la~~~-----g~--~~-----~~~~~~~~~-l~~ 238 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK-----GVAEITIANRTYERAEELAKEL-----GG--NA-----VPLDELLEL-LNE 238 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHc-----CC--eE-----EeHHHHHHH-Hhc
Confidence 356899999999988888888752 2467888999987766554432 11 11 123445544 677
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeEEeccHHH
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDV 527 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~~~el 527 (774)
||.||.++....+ .++...+.... . + +..+++-+..|.+.+.-- ...+.+..+.-+++
T Consensus 239 aDvVi~at~~~~~-----~~~~~~~~~~~-~-~-~~~~viDlavPrdi~~~v-~~l~~v~l~~vDdl 296 (311)
T cd05213 239 ADVVISATGAPHY-----AKIVERAMKKR-S-G-KPRLIVDLAVPRDIEPEV-GELEGVRLYTIDDL 296 (311)
T ss_pred CCEEEECCCCCch-----HHHHHHHHhhC-C-C-CCeEEEEeCCCCCCchhh-ccCCCcEEEEHHHh
Confidence 9999999976211 23222222221 1 1 246888888877644221 11223334555555
No 125
>PLN00198 anthocyanidin reductase; Provisional
Probab=81.73 E-value=11 Score=41.32 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=52.5
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhH-HHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKE-REKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~e-r~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
.++|+|.|+ |-+|..+++.|.+ .|.+|.++..++... ....+... ...++ +.+++||.+|++.+.+. +
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~--~~~~~~Dl~d~~~~~~~-~ 78 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQ---KGYAVNTTVRDPENQKKIAHLRAL----QELGD--LKIFGADLTDEESFEAP-I 78 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHH---CCCEEEEEECCCCCHHHHHHHHhc----CCCCc--eEEEEcCCCChHHHHHH-H
Confidence 568999996 6789999999976 488887665443211 11111110 01123 45689999999887764 3
Q ss_pred CCccEEEEeeCC
Q 004087 720 ETFDSILILADE 731 (774)
Q Consensus 720 ~~aD~vIiLtdd 731 (774)
..+|.|+-++..
T Consensus 79 ~~~d~vih~A~~ 90 (338)
T PLN00198 79 AGCDLVFHVATP 90 (338)
T ss_pred hcCCEEEEeCCC
Confidence 468999988864
No 126
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=81.23 E-value=5.8 Score=41.53 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=51.5
Q ss_pred cCeEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCC-HHHHhccCcc
Q 004087 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLI-LADLKKVSVS 459 (774)
Q Consensus 382 k~HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~-~e~L~rAgI~ 459 (774)
.+.++|+|. |..+..++++|... ++.|++..++++..+.... .+.++.++.||.++ .+.+.++-..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLP------QDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcc------cCCceEEEEeeCCCCHHHHHHHhhc
Confidence 457999996 55788899998753 3667666666654433221 12358899999998 4666554224
Q ss_pred cccEEEEecCC
Q 004087 460 KARAIIVLASD 470 (774)
Q Consensus 460 ~A~aVIiltdd 470 (774)
.+|.||.++..
T Consensus 85 ~~d~vi~~~g~ 95 (251)
T PLN00141 85 DSDAVICATGF 95 (251)
T ss_pred CCCEEEECCCC
Confidence 78999987653
No 127
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=81.10 E-value=5.1 Score=48.99 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhhhhhhcc-------CC----CHHHHHHHHHHHhhccCCCCCC---CCccCceeeehhhHhHHH
Q 004087 290 ALLFATIFLIIFGGLALYAVS-------DS----SFAEALWLSWTFVADSGNHADR---VGTGPRIVSVSISSGGML 352 (774)
Q Consensus 290 ~Ll~~~l~lil~g~~~~~~ie-------~~----s~~dAly~~~~TltTvGygd~~---~t~~gRi~~v~lil~Gl~ 352 (774)
++++++++++++|.++++.+| +. -+.+||++++. .-|.||.-.+ .+.+..++.+++|.+|..
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVs-tRTAGFntVdls~Lspatlvl~iiLMyIGa~ 661 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVS-TRTAGFTVVDLSQLHPAIQVSYMLMMYVSVL 661 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhcc-cccccccccchHhcChhHHHHHHHHHHhccC
Confidence 344566777888888888776 22 36888888865 4778997664 345566666666666543
No 128
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=80.92 E-value=9.3 Score=34.76 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=49.2
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
...+++|+|.|+.+..-++.|... +..|.++..+.+..+ + .+.+.. ... + ..++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~~~~~----~--------~i~~~~-~~~-----~-~~l~~ 60 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA------GAKVTVISPEIEFSE----G--------LIQLIR-REF-----E-EDLDG 60 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSEHHHH----T--------SCEEEE-SS------G-GGCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCEEEEECCchhhhh----h--------HHHHHh-hhH-----H-HHHhh
Confidence 356899999999999888888653 356666655532222 1 123332 222 2 33677
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l~ 491 (774)
++.|++.+++ .+.|-.++..+|..+
T Consensus 61 ~~lV~~at~d------~~~n~~i~~~a~~~~ 85 (103)
T PF13241_consen 61 ADLVFAATDD------PELNEAIYADARARG 85 (103)
T ss_dssp ESEEEE-SS-------HHHHHHHHHHHHHTT
T ss_pred heEEEecCCC------HHHHHHHHHHHhhCC
Confidence 9999999976 677777777777653
No 129
>PRK12829 short chain dehydrogenase; Provisional
Probab=80.88 E-value=3.8 Score=42.66 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=55.2
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-- 717 (774)
+.++++|.|+ |.+|..+++.|.+ .|.+|.++..++ +..+.+.+ .+++..+..+.+|.+|++.+.++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~---~g~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAE---AGARVHVCDVSE--AALAATAA------RLPGAKVTATVADVADPAQVERVFD 78 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------HHhcCceEEEEccCCCHHHHHHHHH
Confidence 3468999998 6789999999976 489999998643 33333333 11222445689999999977542
Q ss_pred ----CCCCccEEEEeeCC
Q 004087 718 ----PLETFDSILILADE 731 (774)
Q Consensus 718 ----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 79 ~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 79 TAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 13468999887753
No 130
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.83 E-value=3.4 Score=39.74 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=47.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
..++++|+|.|..|..+++.|.+. .+..+++++.+ .++.+.+.+ .+... .+..+..+.+ ++ ++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~--g~~~v~v~~r~--~~~~~~~~~------~~~~~---~~~~~~~~~~---~~-~~ 80 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL--GAAKIVIVNRT--LEKAKALAE------RFGEL---GIAIAYLDLE---EL-LA 80 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCCEEEEEcCC--HHHHHHHHH------HHhhc---ccceeecchh---hc-cc
Confidence 357899999999999999999763 14788998864 355555543 11110 0011223322 22 68
Q ss_pred CccEEEEeeCCC
Q 004087 721 TFDSILILADES 732 (774)
Q Consensus 721 ~aD~vIiLtdd~ 732 (774)
++|.+|..+..+
T Consensus 81 ~~Dvvi~~~~~~ 92 (155)
T cd01065 81 EADLIINTTPVG 92 (155)
T ss_pred cCCEEEeCcCCC
Confidence 899998887654
No 131
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=80.71 E-value=11 Score=41.11 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=61.9
Q ss_pred ceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCCh-hHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~-~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
++|||+|+|.-+ +++++.++. +=-+++++|-+|. -+.|++.-.. +..... +-++.++.+|+ .+.+++..- +
T Consensus 78 k~VLiiGgGdG~--tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~-~~~~~~-dpRv~i~i~Dg--~~~v~~~~~-~ 149 (282)
T COG0421 78 KRVLIIGGGDGG--TLREVLKHL-PVERITMVEIDPAVIELARKYLPE-PSGGAD-DPRVEIIIDDG--VEFLRDCEE-K 149 (282)
T ss_pred CeEEEECCCccH--HHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccC-cccccC-CCceEEEeccH--HHHHHhCCC-c
Confidence 799999998764 566666552 3467899997541 1223222110 000112 45566799999 677776544 9
Q ss_pred ccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 722 aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
||+||+=++|.. .=+.+|++--..+...+.
T Consensus 150 fDvIi~D~tdp~------gp~~~Lft~eFy~~~~~~ 179 (282)
T COG0421 150 FDVIIVDSTDPV------GPAEALFTEEFYEGCRRA 179 (282)
T ss_pred CCEEEEcCCCCC------CcccccCCHHHHHHHHHh
Confidence 999998776642 235667777666666654
No 132
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=80.56 E-value=5.1 Score=44.00 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=54.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCCh---hHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~---~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~ 718 (774)
++|||.|+ |-+|..+++.|.+ .|.+|+.++..+. .++.+.+.+.. ....+..+.++.||.+|++.++++=
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~d~~~l~~~~ 74 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLE---KGYEVHGLIRRSSSFNTQRIEHIYEDP---HNVNKARMKLHYGDLTDSSNLRRII 74 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHH---CCCEEEEEecCCcccchhhhhhhhhcc---ccccccceeEEEeccCCHHHHHHHH
Confidence 47999998 7799999999976 4899999876432 12333332100 0001123457899999998887632
Q ss_pred C-CCccEEEEeeCC
Q 004087 719 L-ETFDSILILADE 731 (774)
Q Consensus 719 I-~~aD~vIiLtdd 731 (774)
- ...|.|+=++..
T Consensus 75 ~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 75 DEIKPTEIYNLAAQ 88 (343)
T ss_pred HhCCCCEEEECCcc
Confidence 1 247888888764
No 133
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=80.48 E-value=6.1 Score=38.19 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=44.6
Q ss_pred EEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCccE
Q 004087 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 724 (774)
Q Consensus 645 ILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD~ 724 (774)
++|+|.|.++..+++..... |.+|++++..+ | .+++..- +...+. .+.++...+..-+.
T Consensus 1 L~I~GaG~va~al~~la~~l---g~~v~v~d~r~--e-------------~~~~~~~-~~~~~~--~~~~~~~~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL---GFRVTVVDPRP--E-------------RFPEADE-VICIPP--DDILEDLEIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC---TEEEEEEES-C--C-------------C-TTSSE-EECSHH--HHHHHHC-S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhC---CCEEEEEcCCc--c-------------ccCCCCc-cEecCh--HHHHhccCCCCCeE
Confidence 57999999999999988764 99999999753 2 2233321 233333 44446667877777
Q ss_pred EEEeeCCCCcCCcCCCcHHHHHHHH
Q 004087 725 ILILADESLEDSIVHSDSRSLATLL 749 (774)
Q Consensus 725 vIiLtdd~~~~~~~~~Ds~~L~tlL 749 (774)
| ++|-+ .+-|...|-.+|
T Consensus 60 V-v~th~------h~~D~~~L~~~l 77 (136)
T PF13478_consen 60 V-VMTHD------HELDAEALEAAL 77 (136)
T ss_dssp E-E--S-------CCCHHHHHHHHT
T ss_pred E-EEcCC------chhHHHHHHHHH
Confidence 6 57644 345666665554
No 134
>PRK03612 spermidine synthase; Provisional
Probab=80.37 E-value=12 Score=44.23 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=47.8
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcC-CC---CcCCCCCceEEEEecCcccHhhhh
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GL---DISGLMNIKLVHREGNAVIRRHLE 715 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~-g~---~~~~l~~i~V~~i~GD~td~~~L~ 715 (774)
+.+++|+++|+|.-+ +++++.++ +...+++++|.+| +-.+...+. .+ ....+++-++++++||+. +.++
T Consensus 296 ~~~~rVL~IG~G~G~--~~~~ll~~-~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~--~~l~ 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGL--ALREVLKY-PDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAF--NWLR 368 (521)
T ss_pred CCCCeEEEEcCCccH--HHHHHHhC-CCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHH--HHHH
Confidence 346799999998543 44555444 2237999999764 433333221 00 111233445667999994 5565
Q ss_pred cCCCCCccEEEE
Q 004087 716 SLPLETFDSILI 727 (774)
Q Consensus 716 ~~~I~~aD~vIi 727 (774)
+. -++||.|++
T Consensus 369 ~~-~~~fDvIi~ 379 (521)
T PRK03612 369 KL-AEKFDVIIV 379 (521)
T ss_pred hC-CCCCCEEEE
Confidence 54 368998877
No 135
>PLN03223 Polycystin cation channel protein; Provisional
Probab=80.27 E-value=19 Score=46.27 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhhccCCCC-----C-C----CCccCcee-eehhhHhHHHHHHHHHHHHHHHHHHH
Q 004087 312 SSFAEALWLSWTFVADSGNHA-----D-R----VGTGPRIV-SVSISSGGMLIFAMMLGLVSDAISEK 368 (774)
Q Consensus 312 ~s~~dAly~~~~TltTvGygd-----~-~----~t~~gRi~-~v~lil~Gl~ifa~lig~i~~~i~~~ 368 (774)
.+|..+++-.+..+. |-.+ . . ....|.++ ..+++++.++++-+++++|.+.+.+.
T Consensus 1360 STf~sSL~TLFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1360 SDMTDSINSLFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred cCHHHHHHHHHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776665554 3222 1 1 12345554 44566666777889999999888774
No 136
>PRK09291 short chain dehydrogenase; Provisional
Probab=80.24 E-value=10 Score=39.30 Aligned_cols=80 Identities=13% Similarity=0.012 Sum_probs=53.6
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
++++|.|+ |.+|..+++.|.+ .|..|.++..++ +..+.+.+.. .-.+..+.++.+|.+|.+.++++--..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~---~G~~v~~~~r~~--~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLAR---KGHNVIAGVQIA--PQVTALRAEA----ARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHH----HhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 47999998 6789999999976 488998887643 2233332200 001123456899999999887753347
Q ss_pred ccEEEEeeCC
Q 004087 722 FDSILILADE 731 (774)
Q Consensus 722 aD~vIiLtdd 731 (774)
.|.+|-.++-
T Consensus 74 id~vi~~ag~ 83 (257)
T PRK09291 74 VDVLLNNAGI 83 (257)
T ss_pred CCEEEECCCc
Confidence 8988887653
No 137
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.09 E-value=5.4 Score=41.07 Aligned_cols=79 Identities=9% Similarity=0.113 Sum_probs=55.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCC-CceEEEEecCcccHhhhhcC--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~-~i~V~~i~GD~td~~~L~~~-- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|+++...+ ++.+.+.+ .+. +..+.++.+|.+|++.++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAA---EGARVVVTDRNE--EAAERVAA------EILAGGRAIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------HHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 358999997 6789999999976 499999998754 33333332 111 22356789999999988642
Q ss_pred ----CCCCccEEEEeeCC
Q 004087 718 ----PLETFDSILILADE 731 (774)
Q Consensus 718 ----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 74 ~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 74 AALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 23467988888764
No 138
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=79.75 E-value=15 Score=35.59 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh--HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~--er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
||.|+|. |.+|..++-.|-.. .-+.++.+++.+++. .....+.+.. ......+.+..|+..+ +.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-~l~~ei~L~D~~~~~~~g~a~Dl~~~~----~~~~~~~~i~~~~~~~--------~~ 68 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-GLADEIVLIDINEDKAEGEALDLSHAS----APLPSPVRITSGDYEA--------LK 68 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHHHH----HGSTEEEEEEESSGGG--------GT
T ss_pred EEEEECCCChHHHHHHHHHHhC-CCCCceEEeccCcccceeeehhhhhhh----hhcccccccccccccc--------cc
Confidence 7999999 99999999999764 567899999975322 1222222210 0111222222333322 66
Q ss_pred CccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 721 TFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 721 ~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
++|.+|++++... .+.+.++...-...-+++++.++
T Consensus 69 ~aDivvitag~~~-~~g~sR~~ll~~N~~i~~~~~~~ 104 (141)
T PF00056_consen 69 DADIVVITAGVPR-KPGMSRLDLLEANAKIVKEIAKK 104 (141)
T ss_dssp TESEEEETTSTSS-STTSSHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEeccccc-cccccHHHHHHHhHhHHHHHHHH
Confidence 8888888887543 23344544455566666666664
No 139
>PRK00811 spermidine synthase; Provisional
Probab=79.59 E-value=16 Score=39.66 Aligned_cols=79 Identities=9% Similarity=0.137 Sum_probs=45.8
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcC--CCCcCCCCCceEEEEecCcccHhhhhcCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG--GLDISGLMNIKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~--g~~~~~l~~i~V~~i~GD~td~~~L~~~~ 718 (774)
.+++||++|+|.- . +++++.++ ....+|+++|.++ +-.+...+. .+..+.+++-.+.+++||+. +.+++ .
T Consensus 76 ~p~~VL~iG~G~G-~-~~~~~l~~-~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~-~ 147 (283)
T PRK00811 76 NPKRVLIIGGGDG-G-TLREVLKH-PSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAE-T 147 (283)
T ss_pred CCCEEEEEecCch-H-HHHHHHcC-CCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchH--HHHhh-C
Confidence 4679999998864 3 24444333 2345899999764 322222210 00001123455677999984 46655 4
Q ss_pred CCCccEEEE
Q 004087 719 LETFDSILI 727 (774)
Q Consensus 719 I~~aD~vIi 727 (774)
-+.||.||+
T Consensus 148 ~~~yDvIi~ 156 (283)
T PRK00811 148 ENSFDVIIV 156 (283)
T ss_pred CCcccEEEE
Confidence 568998887
No 140
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=79.58 E-value=9.3 Score=39.88 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=68.5
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCCh----------HHHHHHHHhhhcccCCccEE-EEEeCCCC
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK----------EEMEMDIAKLEFDFMGTSVI-CRSGSPLI 449 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~----------e~le~~l~~~~~~~~~~~V~-~I~Gd~t~ 449 (774)
...+++|.|+|.++..+++.|.+. +..+|.++|.+. +.++...+.. .+. +-.++..+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-----G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~-------~~~~~~~~~~~~ 89 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-----GGKVLAVSDPDGYIYDPGITTEELINYAVALG-------GSARVKVQDYFP 89 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC-------CccccCcccccC
Confidence 456999999999999999999763 246888889877 5554432211 111 11234445
Q ss_pred HHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecC----CCCHHHHHHcCCCeeEEeccH
Q 004087 450 LADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD----LDNEPLVKLVGGELIETVVAH 525 (774)
Q Consensus 450 ~e~L~rAgI~~A~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d----~e~~~~l~~~Gad~VevV~~~ 525 (774)
.+.+.. + +||.+|-++.. |+...-.++++. +++|++.-| ++..+.|+.-|+ ++.|+
T Consensus 90 ~~~l~~--~-~~DVlipaA~~---------~~i~~~~a~~l~----a~~V~e~AN~p~t~~a~~~L~~~Gi----~v~Pd 149 (217)
T cd05211 90 GEAILG--L-DVDIFAPCALG---------NVIDLENAKKLK----AKVVAEGANNPTTDEALRILHERGI----VVAPD 149 (217)
T ss_pred ccccee--c-cccEEeecccc---------CccChhhHhhcC----ccEEEeCCCCCCCHHHHHHHHHCCc----EEECh
Confidence 555553 3 79999988854 233333344442 457776544 344556666663 35555
Q ss_pred HH
Q 004087 526 DV 527 (774)
Q Consensus 526 el 527 (774)
-+
T Consensus 150 ~~ 151 (217)
T cd05211 150 IV 151 (217)
T ss_pred HH
Confidence 54
No 141
>PRK08251 short chain dehydrogenase; Provisional
Probab=79.47 E-value=8.2 Score=39.86 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=53.9
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA----- 456 (774)
..++|.|.+. .+..++++|.+. +..|++++++++..+....+......+.++.++.+|.++++.++++
T Consensus 3 k~vlItGas~giG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAK------GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 4688998765 477788998753 3678888888776655443321111244688899999999877642
Q ss_pred -CcccccEEEEecC
Q 004087 457 -SVSKARAIIVLAS 469 (774)
Q Consensus 457 -gI~~A~aVIiltd 469 (774)
.....|.+|..+.
T Consensus 77 ~~~~~id~vi~~ag 90 (248)
T PRK08251 77 DELGGLDRVIVNAG 90 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 1234677777764
No 142
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=79.29 E-value=12 Score=38.95 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=53.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCC--CceEEEEecCcccHhhhhcC-
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~--~i~V~~i~GD~td~~~L~~~- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++.++ ++.+.+.+ .++ +..+..+.+|.+|++.++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~------~i~~~~~~~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQ---AGAEVILNGRDP--AKLAAAAE------SLKGQGLSAHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHH------HHHhcCceEEEEEccCCCHHHHHHHH
Confidence 468999998 6789999999976 499998887643 32222222 111 23456789999998877643
Q ss_pred -----CCCCccEEEEeeCC
Q 004087 718 -----PLETFDSILILADE 731 (774)
Q Consensus 718 -----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 79 ~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 79 DAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 23457888888764
No 143
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=79.22 E-value=17 Score=39.36 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=53.2
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh-HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~-er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
.++|+|.|+ |-+|..+++.|.+ .|.+|.++..++.. +....+.... . ....+.++.||.+|++.++++ +
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~----~-~~~~~~~~~~D~~d~~~~~~~-~ 75 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLF---RGYTINATVRDPKDRKKTDHLLALD----G-AKERLKLFKADLLDEGSFELA-I 75 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHH---CCCEEEEEEcCCcchhhHHHHHhcc----C-CCCceEEEeCCCCCchHHHHH-H
Confidence 468999997 7799999999976 48898877644321 1111111100 0 012345689999999887764 4
Q ss_pred CCccEEEEeeCC
Q 004087 720 ETFDSILILADE 731 (774)
Q Consensus 720 ~~aD~vIiLtdd 731 (774)
+..|.+|-++..
T Consensus 76 ~~~d~vih~A~~ 87 (325)
T PLN02989 76 DGCETVFHTASP 87 (325)
T ss_pred cCCCEEEEeCCC
Confidence 568999998864
No 144
>PRK07060 short chain dehydrogenase; Provisional
Probab=79.20 E-value=10 Score=38.88 Aligned_cols=76 Identities=11% Similarity=0.027 Sum_probs=53.2
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--C
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 718 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~ 718 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ +..+.+.+ .+ + +.++.+|.+|++.+++. .
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~---~g~~V~~~~r~~--~~~~~~~~------~~-~--~~~~~~D~~~~~~v~~~~~~ 74 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQ---RGARVVAAARNA--AALDRLAG------ET-G--CEPLRLDVGDDAAIRAALAA 74 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------Hh-C--CeEEEecCCCHHHHHHHHHH
Confidence 468999998 6899999999976 488999888643 44445543 11 1 23578999998876552 1
Q ss_pred CCCccEEEEeeCC
Q 004087 719 LETFDSILILADE 731 (774)
Q Consensus 719 I~~aD~vIiLtdd 731 (774)
....|.+|-.+..
T Consensus 75 ~~~~d~vi~~ag~ 87 (245)
T PRK07060 75 AGAFDGLVNCAGI 87 (245)
T ss_pred hCCCCEEEECCCC
Confidence 3467988887764
No 145
>PRK06194 hypothetical protein; Provisional
Probab=79.11 E-value=8.2 Score=40.92 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=56.0
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
..+++|.|.+. .|..++++|... +..|++++.+.+.++...++... .+.++.++.+|.++.+.++++--
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL------GMKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789999765 577888988752 46788888877665555443211 13467889999999998877521
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
...|.+|-++..
T Consensus 78 ~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 78 LERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHcCCCCEEEECCCC
Confidence 135888887765
No 146
>PLN02650 dihydroflavonol-4-reductase
Probab=79.01 E-value=14 Score=40.68 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=64.0
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh-HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~-er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
.++|||.|+ |-+|..+++.|.+ .|.+|.++..++.. +....+.+. . .. +..+.++.||.+|.+.++++ +
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~---~-~~-~~~~~~v~~Dl~d~~~~~~~-~ 75 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE---RGYTVRATVRDPANVKKVKHLLDL---P-GA-TTRLTLWKADLAVEGSFDDA-I 75 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH---CCCEEEEEEcCcchhHHHHHHHhc---c-CC-CCceEEEEecCCChhhHHHH-H
Confidence 458999998 7899999999976 48899887654321 111111110 0 00 11345789999999888764 4
Q ss_pred CCccEEEEeeCCCC-c-CCc--CCCcHHHHHHHHHHHHHhh
Q 004087 720 ETFDSILILADESL-E-DSI--VHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 720 ~~aD~vIiLtdd~~-~-~~~--~~~Ds~~L~tlLl~r~i~~ 756 (774)
+.+|.||-++.... . .++ ..-|.+...+.-+++-..+
T Consensus 76 ~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~ 116 (351)
T PLN02650 76 RGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAK 116 (351)
T ss_pred hCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHh
Confidence 56899998876321 1 111 1234445556666665543
No 147
>PRK07831 short chain dehydrogenase; Provisional
Probab=78.96 E-value=19 Score=37.59 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=52.5
Q ss_pred CceEEEEcc-c-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--
Q 004087 642 PEKILFCGW-R-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 642 ~~rILI~Gw-g-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-- 717 (774)
.++++|.|+ | .+|..+++.|.+ .|..|.+++.++ ++.+...+. +. ..+.+..+..+.+|.++++.++++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~---~G~~V~~~~~~~--~~~~~~~~~-~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~ 89 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALE---EGARVVISDIHE--RRLGETADE-LA-AELGLGRVEAVVCDVTSEAQVDALID 89 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-HH-HhcCCceEEEEEccCCCHHHHHHHHH
Confidence 478999998 4 599999999976 489988887543 222222210 00 012222355689999998766431
Q ss_pred ----CCCCccEEEEeeCC
Q 004087 718 ----PLETFDSILILADE 731 (774)
Q Consensus 718 ----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 90 ~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 90 AAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 12467888888763
No 148
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.96 E-value=8.8 Score=45.71 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=56.9
Q ss_pred ccCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc-cc------CCccEEEEEeCCCCHHH
Q 004087 381 EKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-DF------MGTSVICRSGSPLILAD 452 (774)
Q Consensus 381 ~k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~-~~------~~~~V~~I~Gd~t~~e~ 452 (774)
....++|.|++ ..|..++++|... |+.|+++.++.+..+...+.+.. .. ...++.++.||.++.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34578889874 4688889998753 47788888887766544332100 00 01347899999999999
Q ss_pred HhccCcccccEEEEecCC
Q 004087 453 LKKVSVSKARAIIVLASD 470 (774)
Q Consensus 453 L~rAgI~~A~aVIiltdd 470 (774)
++++ +..+|.||.++..
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8764 5678998888754
No 149
>PRK07806 short chain dehydrogenase; Provisional
Probab=78.92 E-value=12 Score=38.71 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=63.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc----
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~---- 716 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++..+.. ++.+.+.+. +. . ....+.++.+|.+|++.+++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~---~G~~V~~~~r~~~-~~~~~~~~~-l~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAG---AGAHVVVNYRQKA-PRANKVVAE-IE--A-AGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHH---CCCEEEEEeCCch-HhHHHHHHH-HH--h-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 368999998 7899999999975 4899988865432 222222210 00 0 01234568999999987653
Q ss_pred --CCCCCccEEEEeeCCCCc---CCcCCCcHHHHHHHHHHHHHhh
Q 004087 717 --LPLETFDSILILADESLE---DSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 717 --~~I~~aD~vIiLtdd~~~---~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
......|.+|..+..... +....-+.+...++.+++.+.+
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~ 122 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALP 122 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHh
Confidence 223467888877653211 1112233455556666666654
No 150
>PLN02780 ketoreductase/ oxidoreductase
Probab=78.90 E-value=15 Score=40.23 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=40.1
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCC
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL 448 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t 448 (774)
...++|.|++. .|..++++|... |..|++++++++.++...++....+.+.++.++..|.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~------G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARK------GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 45788889876 578889998752 46788899998877765544321122234556666665
No 151
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.86 E-value=8.6 Score=40.38 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=53.2
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
.+.++|.|.+. .+..++++|.+. |..|++.+++++..+...++. +.++.++.+|.++++.++++-
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA------GARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHH
Confidence 45788888754 588889998753 468888898877666554332 345788999999998876641
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
....|.+|-.+.
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 124567766654
No 152
>PRK09291 short chain dehydrogenase; Provisional
Probab=78.80 E-value=12 Score=38.82 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=54.8
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
.+++|.|.+. .|..++++|... +..|++..++++..+...+.. ...+.++.++.+|.++++.++++--...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK------GHNVIAGVQIAPQVTALRAEA--ARRGLALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHH--HhcCCcceEEEeeCCCHHHHHHHhcCCC
Confidence 4799999865 577788888753 467777777665544432211 1113458889999999999988744578
Q ss_pred cEEEEecC
Q 004087 462 RAIIVLAS 469 (774)
Q Consensus 462 ~aVIiltd 469 (774)
+.+|-++.
T Consensus 75 d~vi~~ag 82 (257)
T PRK09291 75 DVLLNNAG 82 (257)
T ss_pred CEEEECCC
Confidence 88888765
No 153
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.63 E-value=4 Score=47.29 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=46.0
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChh---HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK---EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~---er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
..++|+|+|+|..|..+++.|.+ .|.+|++++..+.+ ...+.+.+. ++.+ ..|+...
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~---~G~~V~~~d~~~~~~~~~~~~~l~~~--------gv~~--~~~~~~~------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE---LGARVTVVDDGDDERHRALAAILEAL--------GATV--RLGPGPT------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCchhhhHHHHHHHHHc--------CCEE--EECCCcc-------
Confidence 35689999999999999999976 49999999864321 122334332 3443 4555332
Q ss_pred CCCCccEEEEeeC
Q 004087 718 PLETFDSILILAD 730 (774)
Q Consensus 718 ~I~~aD~vIiLtd 730 (774)
....+|.||+-++
T Consensus 75 ~~~~~D~Vv~s~G 87 (480)
T PRK01438 75 LPEDTDLVVTSPG 87 (480)
T ss_pred ccCCCCEEEECCC
Confidence 2356898877665
No 154
>PRK04148 hypothetical protein; Provisional
Probab=78.39 E-value=4.9 Score=38.85 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=53.0
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
..+++++|.| .+..++..|.+ .|+.|+.+|.+++.++...+ ..+.++.+|-++++. .- -+.|
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~------~G~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~~-~~--y~~a 78 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKE------SGFDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPNL-EI--YKNA 78 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHH------CCCEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCCH-HH--HhcC
Confidence 3689999999 67888888875 25899999999988776643 346788899887643 21 2368
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
+.|-..-+.
T Consensus 79 ~liysirpp 87 (134)
T PRK04148 79 KLIYSIRPP 87 (134)
T ss_pred CEEEEeCCC
Confidence 888888754
No 155
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.32 E-value=9.2 Score=41.23 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=53.1
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh-HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~-er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
++|+|.|+ |-+|..+++.|.+ .|.+|+++..++.. +....+... + ...+ .+.+++||.+|.+.++++ ++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~--~-~~~~--~~~~~~~Dl~~~~~~~~~-~~ 75 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQ---RGYTVKATVRDPNDPKKTEHLLAL--D-GAKE--RLHLFKANLLEEGSFDSV-VD 75 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHH---CCCEEEEEEcCCCchhhHHHHHhc--c-CCCC--ceEEEeccccCcchHHHH-Hc
Confidence 58999997 8899999999976 48999887654321 111222110 0 0012 345689999998877654 45
Q ss_pred CccEEEEeeCC
Q 004087 721 TFDSILILADE 731 (774)
Q Consensus 721 ~aD~vIiLtdd 731 (774)
.+|.||-++..
T Consensus 76 ~~d~Vih~A~~ 86 (322)
T PLN02662 76 GCEGVFHTASP 86 (322)
T ss_pred CCCEEEEeCCc
Confidence 68999998863
No 156
>PLN02427 UDP-apiose/xylose synthase
Probab=78.26 E-value=7.7 Score=43.45 Aligned_cols=83 Identities=17% Similarity=0.040 Sum_probs=55.9
Q ss_pred CCCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC
Q 004087 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~ 718 (774)
..+.+|+|.|+ |-+|..+++.|.+. .|.+|..++..+ ++...+.+.+.. ...++ +.++.||.+|.+.++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~r~~--~~~~~l~~~~~~-~~~~~--~~~~~~Dl~d~~~l~~~- 83 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALDVYN--DKIKHLLEPDTV-PWSGR--IQFHRINIKHDSRLEGL- 83 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEecCc--hhhhhhhccccc-cCCCC--eEEEEcCCCChHHHHHH-
Confidence 34468999998 88999999999752 258898887543 333333321100 00123 55789999999988775
Q ss_pred CCCccEEEEeeC
Q 004087 719 LETFDSILILAD 730 (774)
Q Consensus 719 I~~aD~vIiLtd 730 (774)
+..+|.||=++.
T Consensus 84 ~~~~d~ViHlAa 95 (386)
T PLN02427 84 IKMADLTINLAA 95 (386)
T ss_pred hhcCCEEEEccc
Confidence 456899998875
No 157
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=78.20 E-value=8.5 Score=42.51 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=54.4
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcC--CCCcCCCCCceEEEEecCcccHhhhhcCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG--GLDISGLMNIKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~--g~~~~~l~~i~V~~i~GD~td~~~L~~~~ 718 (774)
.++|+|.|+ |-+|..+++.|.+ .|.+|+.++..+. ..+..+.+. +....... .+.++.||.+|.+.|.++
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~---~g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~Di~d~~~l~~~- 87 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLF---LNQTVIGLDNFST-GYQHNLDDVRTSVSEEQWS--RFIFIQGDIRKFTDCQKA- 87 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHH---CCCEEEEEeCCCC-cchhhhhhhhhccccccCC--ceEEEEccCCCHHHHHHH-
Confidence 468999998 8899999999976 4889998875321 111111110 00000112 245789999999888765
Q ss_pred CCCccEEEEeeCC
Q 004087 719 LETFDSILILADE 731 (774)
Q Consensus 719 I~~aD~vIiLtdd 731 (774)
++.+|.||=++..
T Consensus 88 ~~~~d~ViHlAa~ 100 (348)
T PRK15181 88 CKNVDYVLHQAAL 100 (348)
T ss_pred hhCCCEEEECccc
Confidence 4568999988753
No 158
>PRK12744 short chain dehydrogenase; Provisional
Probab=78.19 E-value=8.3 Score=40.21 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=63.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCC--hhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p--~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.++.++...+ ..+..+.+.+. + .. .+..+..+++|.+|++.+++.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~---~G~~vv~i~~~~~~~~~~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~ 80 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAA---QGAKAVAIHYNSAASKADAEETVAA-V--KA-AGAKAVAFQADLTTAAAVEKLF 80 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHH---CCCcEEEEecCCccchHHHHHHHHH-H--HH-hCCcEEEEecCcCCHHHHHHHH
Confidence 358999987 5679999999976 488877775322 12222222210 0 00 123455789999999887642
Q ss_pred -----CCCCccEEEEeeCCCCcCCcCC---------CcHHHHHHHHHHHHHhhh
Q 004087 718 -----PLETFDSILILADESLEDSIVH---------SDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 718 -----~I~~aD~vIiLtdd~~~~~~~~---------~Ds~~L~tlLl~r~i~~~ 757 (774)
.....|.+|..++........+ -+.+.+.++++++...+.
T Consensus 81 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 134 (257)
T PRK12744 81 DDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRH 134 (257)
T ss_pred HHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 2356798888876421111111 122455566667776654
No 159
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.11 E-value=21 Score=38.53 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=54.0
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-- 717 (774)
..+.|+|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+...+ .+. ...++..+.++.+|.+|.+.++++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~---~G~~vi~~~r~~--~~~~~~~~-~l~-~~~~~~~~~~~~~Dl~d~~~v~~~~~ 87 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAA---KGAHVVLAVRNL--DKGKAAAA-RIT-AATPGADVTLQELDLTSLASVRAAAD 87 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH-HHH-HhCCCCceEEEECCCCCHHHHHHHHH
Confidence 3468999998 6789999999986 488988887643 33222111 000 011233456789999999876542
Q ss_pred ----CCCCccEEEEeeC
Q 004087 718 ----PLETFDSILILAD 730 (774)
Q Consensus 718 ----~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 88 ~~~~~~~~iD~li~nAg 104 (306)
T PRK06197 88 ALRAAYPRIDLLINNAG 104 (306)
T ss_pred HHHhhCCCCCEEEECCc
Confidence 2356898888775
No 160
>PRK06196 oxidoreductase; Provisional
Probab=77.87 E-value=10 Score=41.11 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=53.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.|+|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+ .+++ +.++.+|.+|.+.++++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~---~G~~Vv~~~R~~--~~~~~~~~------~l~~--v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQ---AGAHVIVPARRP--DVAREALA------GIDG--VEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------Hhhh--CeEEEccCCCHHHHHHHHHH
Confidence 368999998 5689999999976 499999988643 44444433 2233 34689999999876542
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 93 ~~~~~~~iD~li~nAg 108 (315)
T PRK06196 93 FLDSGRRIDILINNAG 108 (315)
T ss_pred HHhcCCCCCEEEECCC
Confidence 2356798888775
No 161
>PRK06914 short chain dehydrogenase; Provisional
Probab=77.76 E-value=13 Score=39.14 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=53.1
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc-----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 716 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~----- 716 (774)
+.++|.|+ |.+|..+++.|.+ .|..|.++...+ +.++.+.+.- ..... +..+.++.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~~-~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAK---KGYLVIATMRNP--EKQENLLSQA-TQLNL-QQNIKVQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHh---CCCEEEEEeCCH--HHHHHHHHHH-HhcCC-CCceeEEecCCCCHHHHHHHHHHH
Confidence 46899997 6789999999975 499999987654 3233322100 00001 2245578999999988764
Q ss_pred CCCCCccEEEEeeCC
Q 004087 717 LPLETFDSILILADE 731 (774)
Q Consensus 717 ~~I~~aD~vIiLtdd 731 (774)
......|.+|-.++.
T Consensus 77 ~~~~~id~vv~~ag~ 91 (280)
T PRK06914 77 KEIGRIDLLVNNAGY 91 (280)
T ss_pred HhcCCeeEEEECCcc
Confidence 123456888888764
No 162
>PRK07831 short chain dehydrogenase; Provisional
Probab=77.75 E-value=9.4 Score=39.95 Aligned_cols=82 Identities=10% Similarity=0.035 Sum_probs=52.0
Q ss_pred cCeEEEEcc-c-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 004087 382 KNHILILGW-S-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (774)
Q Consensus 382 k~HIII~G~-g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI- 458 (774)
...++|.|. | ..+..+++.|... +..|++++++++.++...++....+...++.++++|.++++.++++--
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEE------GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 467899997 4 4789999999753 456888888776665544332111122357778888888877654311
Q ss_pred -----ccccEEEEecC
Q 004087 459 -----SKARAIIVLAS 469 (774)
Q Consensus 459 -----~~A~aVIiltd 469 (774)
...|.+|-++.
T Consensus 91 ~~~~~g~id~li~~ag 106 (262)
T PRK07831 91 AVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHcCCCCEEEECCC
Confidence 24566666654
No 163
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.74 E-value=9.2 Score=39.91 Aligned_cols=78 Identities=13% Similarity=-0.018 Sum_probs=55.2
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc-
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA--gI- 458 (774)
.+++|.|++. .|..++++|... +..|++++++++.++...... .+.++.++++|.++++.++++ ++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE------GWRVGAYDINEAGLAALAAEL----GAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4689999876 477788888752 467888888887766554321 234688999999999988764 22
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
.+-|.+|-++.-
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 72 AATGGRLDVLFNNAGI 87 (260)
T ss_pred HHcCCCCCEEEECCCC
Confidence 234788877754
No 164
>PRK06138 short chain dehydrogenase; Provisional
Probab=77.73 E-value=9.7 Score=39.27 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=55.4
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
..+++|.|.+. .+..++++|.+. +..|+++.++.+..+...++.. .+..+.++.+|.++++.++++=
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE------GARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 35889999865 578888888752 4678888887766555443321 2345788999999999887641
Q ss_pred ---cccccEEEEecCC
Q 004087 458 ---VSKARAIIVLASD 470 (774)
Q Consensus 458 ---I~~A~aVIiltdd 470 (774)
..+.|.+|-++..
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 76 AARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1356888877754
No 165
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=77.72 E-value=8.1 Score=37.15 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=54.7
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
|.++|.|+ +.+|..+++.|.+. -+..|.++..+++.++.+.+.+ .+ +-++..+..++.|.++++.+++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~-~l---~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQ-EL---KAPGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHH-HH---HHTTSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeecccccccccccc-cc---ccccccccccccccccccccccccccc
Confidence 46899997 56799999999874 2446666665434555555532 00 01235567799999999877642
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.-...|.+|-.++-
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 23478888888764
No 166
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=77.70 E-value=11 Score=41.51 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=56.1
Q ss_pred cccCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004087 380 IEKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (774)
Q Consensus 380 ~~k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI 458 (774)
...++++|.|... .|..++++|... +..|++++++++..+....... .+.++.++.||..+.+.++++ +
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQR------GYTVHATLRDPAKSLHLLSKWK---EGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHhhc---cCCeEEEEECCCCCHHHHHHH-H
Confidence 3567899999754 688899999763 4667777666554333322211 124588899999999988776 4
Q ss_pred ccccEEEEecCC
Q 004087 459 SKARAIIVLASD 470 (774)
Q Consensus 459 ~~A~aVIiltdd 470 (774)
++.|.||-++..
T Consensus 78 ~~~d~Vih~A~~ 89 (353)
T PLN02896 78 KGCDGVFHVAAS 89 (353)
T ss_pred cCCCEEEECCcc
Confidence 568999988865
No 167
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=77.67 E-value=19 Score=32.82 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=48.2
Q ss_pred eEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004087 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (774)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~a 463 (774)
++.|+|.|..+...+..+..... ....+-++|.+++..+...++. ++. -.++.+.|.... +.|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~---~~~v~~v~d~~~~~~~~~~~~~-------~~~----~~~~~~~ll~~~--~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP---DFEVVAVCDPDPERAEAFAEKY-------GIP----VYTDLEELLADE--DVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT---TEEEEEEECSSHHHHHHHHHHT-------TSE----EESSHHHHHHHT--TESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCC---CcEEEEEEeCCHHHHHHHHHHh-------ccc----chhHHHHHHHhh--cCCE
Confidence 68999999988888888876421 2355668899998877664432 222 123455554433 7999
Q ss_pred EEEecCC
Q 004087 464 IIVLASD 470 (774)
Q Consensus 464 VIiltdd 470 (774)
|++.+++
T Consensus 66 V~I~tp~ 72 (120)
T PF01408_consen 66 VIIATPP 72 (120)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9999975
No 168
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.41 E-value=10 Score=38.84 Aligned_cols=80 Identities=23% Similarity=0.174 Sum_probs=54.0
Q ss_pred cCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
...++|.|.+ ..|..++++|... +..|++++++++..+...+++.. ..++.++.+|.++++.++++--
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~------g~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE------GYKVAITARDQKELEEAAAELNN---KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC------CCEEEEeeCCHHHHHHHHHHHhc---cCcEEEEEccCCCHHHHHHHHHHH
Confidence 4678999874 4688889998752 45688888887665554443211 1457889999999988765321
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
...+.||-++..
T Consensus 77 ~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 77 VAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHcCCCCEEEECCCC
Confidence 357788877643
No 169
>PRK08643 acetoin reductase; Validated
Probab=77.40 E-value=14 Score=38.44 Aligned_cols=80 Identities=14% Similarity=0.034 Sum_probs=51.9
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc-----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 716 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~----- 716 (774)
+.++|.|+ |.+|..+++.|.+ .|.+|.+++..+ ++.+.+... + ... +..+..+.+|.+|++.+++
T Consensus 3 k~~lItGas~giG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVE---DGFKVAIVDYNE--ETAQAAADK-L--SKD-GGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCeEEEEECCCCCHHHHHHHHHHH
Confidence 57899998 4679999999976 499999998643 333333220 0 000 1234568999999987644
Q ss_pred -CCCCCccEEEEeeCC
Q 004087 717 -LPLETFDSILILADE 731 (774)
Q Consensus 717 -~~I~~aD~vIiLtdd 731 (774)
......|.+|-.++.
T Consensus 74 ~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 74 VDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHcCCCCEEEECCCC
Confidence 123467988888753
No 170
>PRK12829 short chain dehydrogenase; Provisional
Probab=77.30 E-value=10 Score=39.37 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=55.4
Q ss_pred ccCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004087 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (774)
Q Consensus 381 ~k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg-- 457 (774)
...+++|.|.+. .+..++++|.+. ++.|+++.++++..+...++. .+.++.++.+|.++++.++++=
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA------GARVHVCDVSEAALAATAARL----PGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHH----hcCceEEEEccCCCHHHHHHHHHH
Confidence 357899999865 577788888752 467888888876655443321 1225688999999999877641
Q ss_pred ----cccccEEEEecCC
Q 004087 458 ----VSKARAIIVLASD 470 (774)
Q Consensus 458 ----I~~A~aVIiltdd 470 (774)
....|.||-++..
T Consensus 80 ~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 80 AVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 1367888877753
No 171
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.28 E-value=19 Score=37.40 Aligned_cols=79 Identities=8% Similarity=0.039 Sum_probs=53.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh--HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~--er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++...+.+ +..+.+.+ .+..+..+++|.+|.+.++++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~---~G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~ 75 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELAR---AGAAVAIADLNQDGANAVADEINK--------AGGKAIGVAMDVTNEDAVNAGI 75 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHHHHHh--------cCceEEEEECCCCCHHHHHHHH
Confidence 367999998 6789999999976 48999998875421 22222222 123455689999999987642
Q ss_pred -----CCCCccEEEEeeCC
Q 004087 718 -----PLETFDSILILADE 731 (774)
Q Consensus 718 -----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 76 ~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 76 DKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHcCCCCEEEECCcc
Confidence 12357888887753
No 172
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.20 E-value=19 Score=37.55 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=51.6
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh--HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~--er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-- 717 (774)
+.++|.|+ |.+|..+++.|.+ .|.+|.+++.++.+ +..+.+.+ . +..+.++.+|.+|++.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~---~g~~Vi~~~r~~~~~~~~~~~l~~-------~-~~~~~~~~~Dl~~~~~~~~~~~ 70 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLAR---AGAQLVLAARNETRLASLAQELAD-------H-GGEALVVPTDVSDAEACERLIE 70 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHh-------c-CCcEEEEEccCCCHHHHHHHHH
Confidence 46899998 6789999999975 48899999865322 11222222 1 12355689999998876542
Q ss_pred ----CCCCccEEEEeeC
Q 004087 718 ----PLETFDSILILAD 730 (774)
Q Consensus 718 ----~I~~aD~vIiLtd 730 (774)
.....|.+|-.+.
T Consensus 71 ~~~~~~~~id~vi~~ag 87 (263)
T PRK06181 71 AAVARFGGIDILVNNAG 87 (263)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1246788888765
No 173
>PRK07024 short chain dehydrogenase; Provisional
Probab=77.18 E-value=9.6 Score=39.83 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=53.4
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
.++++|.|.+. .|..++++|... +..|++++++++.++...++.. ..+ ++.++.+|.++++.++++-
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~-~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ------GATLGLVARRTDALQAFAARLP--KAA-RVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcc--cCC-eeEEEEcCCCCHHHHHHHHHHH
Confidence 35899999765 578888888752 4678888988877665544321 112 6888999999988876541
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 73 ~~~~g~id~lv~~ag 87 (257)
T PRK07024 73 IAAHGLPDVVIANAG 87 (257)
T ss_pred HHhCCCCCEEEECCC
Confidence 123477776654
No 174
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=77.17 E-value=25 Score=35.99 Aligned_cols=81 Identities=12% Similarity=-0.012 Sum_probs=52.3
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
+.++|.|+ |.+|..+++.|.+ .|..|.++..++.+ ..+.+.+. . ......+..+.+|.+|++.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~---~g~~vi~~~r~~~~-~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLN---DGYRVIATYFSGND-CAKDWFEE-Y---GFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCcHH-HHHHHHHH-h---hccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 57889886 6789999999976 48899888765432 22222210 0 01123456789999998876542
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (245)
T PRK12824 75 EEEEGPVDILVNNAGI 90 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 13467988888764
No 175
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=77.09 E-value=9.6 Score=39.57 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=52.9
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
+.++|.|.+. .+..++++|... +..|++++++++.++...+.. +.++.++.+|.++++.++++=
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ------GHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHH
Confidence 3688999765 577788888752 467888888887766543321 235788999999998876531
Q ss_pred --cccccEEEEecC
Q 004087 458 --VSKARAIIVLAS 469 (774)
Q Consensus 458 --I~~A~aVIiltd 469 (774)
....|.+|..+.
T Consensus 70 ~~~~~id~vi~~ag 83 (248)
T PRK10538 70 AEWRNIDVLVNNAG 83 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 135788887664
No 176
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=77.09 E-value=9 Score=42.28 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=54.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCC-CCceEEEEecCcccHhhhhcCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL-MNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l-~~i~V~~i~GD~td~~~L~~~~I 719 (774)
..+|||.|+ |-+|..+++.|.+ .|.+|+++...+ +....+.+ .+ .+..+.++.||.+|.+.++++ +
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQ---RGYTVHATLRDP--AKSLHLLS------KWKEGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCh--HHHHHHHH------hhccCCeEEEEECCCCCHHHHHHH-H
Confidence 458999997 7799999999976 489998887543 22222221 01 112345689999999888765 4
Q ss_pred CCccEEEEeeCC
Q 004087 720 ETFDSILILADE 731 (774)
Q Consensus 720 ~~aD~vIiLtdd 731 (774)
+..|.||-++..
T Consensus 78 ~~~d~Vih~A~~ 89 (353)
T PLN02896 78 KGCDGVFHVAAS 89 (353)
T ss_pred cCCCEEEECCcc
Confidence 568999998864
No 177
>PRK07454 short chain dehydrogenase; Provisional
Probab=77.08 E-value=14 Score=37.93 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=52.7
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|..|.+++.++ +..+.+.+. + ... +..+.++.+|.+|++.+.++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAK---AGWDLALVARSQ--DALEALAAE-L--RST-GVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--HhC-CCcEEEEEccCCCHHHHHHHHHH
Confidence 367999998 6789999999976 489999998654 222222210 0 011 12345689999999876442
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 77 ~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 77 LLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 12457888877653
No 178
>PRK09242 tropinone reductase; Provisional
Probab=77.01 E-value=20 Score=37.36 Aligned_cols=83 Identities=7% Similarity=0.007 Sum_probs=55.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc----
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~---- 716 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++..++ +..+++.+. +. ...++..+.++.+|.++++.+++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~---~G~~v~~~~r~~--~~~~~~~~~-l~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLG---LGADVLIVARDA--DALAQARDE-LA-EEFPEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-HH-hhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 467999997 5789999999986 489999998643 344433320 00 01234456778999999876543
Q ss_pred --CCCCCccEEEEeeCC
Q 004087 717 --LPLETFDSILILADE 731 (774)
Q Consensus 717 --~~I~~aD~vIiLtdd 731 (774)
......|.+|..++.
T Consensus 82 ~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 82 VEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 123467988888764
No 179
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=76.90 E-value=9.2 Score=36.71 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=49.2
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
..+++|+|.|..+..+++.|...+ ...|.+.+++++..+...++.. ...+..+..+.+.+ ++++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-----~~~v~v~~r~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~ 82 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-----AAKIVIVNRTLEKAKALAERFG-------ELGIAIAYLDLEEL----LAEA 82 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEcCCHHHHHHHHHHHh-------hcccceeecchhhc----cccC
Confidence 568999999998999999987531 3678888998877766544321 10011122333322 6899
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
|.||.+++.
T Consensus 83 Dvvi~~~~~ 91 (155)
T cd01065 83 DLIINTTPV 91 (155)
T ss_pred CEEEeCcCC
Confidence 999999976
No 180
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.90 E-value=13 Score=40.20 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=54.1
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+. + .. .+..+.++.+|.+|.+.++++
T Consensus 40 ~k~vlItGasggIG~~la~~La~---~G~~Vi~~~R~~--~~l~~~~~~-l--~~-~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFAR---RGATVVAVARRE--DLLDAVADR-I--TR-AGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHHH-H--Hh-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 368999998 6789999999976 489999988643 333333320 0 00 122355789999998866432
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 111 ~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 111 VEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 24578998887764
No 181
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.82 E-value=16 Score=37.16 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=51.6
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
++|+|.|+ |.+|..+++.|.+ .|.++.++..... ++.+.+.+. . ...+..+.++.+|.+|.+.+++.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~---~g~~v~~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~~D~~~~~~v~~~~~~~ 78 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLAR---AGADVVVHYRSDE-EAAEELVEA---V-EALGRRAQAVQADVTDKAALEAAVAAA 78 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCCH-HHHHHHHHH---H-HhcCCceEEEECCcCCHHHHHHHHHHH
Confidence 58999998 6789999999976 4888877655432 222222210 0 00122355789999999877542
Q ss_pred --CCCCccEEEEeeC
Q 004087 718 --PLETFDSILILAD 730 (774)
Q Consensus 718 --~I~~aD~vIiLtd 730 (774)
.....|.+|-++.
T Consensus 79 ~~~~~~id~vi~~ag 93 (249)
T PRK12825 79 VERFGRIDILVNNAG 93 (249)
T ss_pred HHHcCCCCEEEECCc
Confidence 1246799988876
No 182
>PRK05993 short chain dehydrogenase; Provisional
Probab=76.81 E-value=12 Score=39.78 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=51.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--C
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 718 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~ 718 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++..++ +..+.+.+. + +.++.+|.+|.+.++++ .
T Consensus 4 ~k~vlItGasggiG~~la~~l~~---~G~~Vi~~~r~~--~~~~~l~~~--------~--~~~~~~Dl~d~~~~~~~~~~ 68 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS---DGWRVFATCRKE--EDVAALEAE--------G--LEAFQLDYAEPESIAALVAQ 68 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHHC--------C--ceEEEccCCCHHHHHHHHHH
Confidence 357999998 7789999999976 499999988643 444555431 2 34579999998866432 1
Q ss_pred C-----CCccEEEEeeC
Q 004087 719 L-----ETFDSILILAD 730 (774)
Q Consensus 719 I-----~~aD~vIiLtd 730 (774)
+ ...|.+|-.++
T Consensus 69 ~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 69 VLELSGGRLDALFNNGA 85 (277)
T ss_pred HHHHcCCCccEEEECCC
Confidence 1 35688887765
No 183
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=76.78 E-value=12 Score=41.96 Aligned_cols=74 Identities=11% Similarity=0.024 Sum_probs=52.3
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
..++|+|.|+ |-+|..+++.|.+ .|.+|+.++..+. ..+... .+ .+.++.||.+|.+.+.++ +
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~---~G~~V~~v~r~~~----~~~~~~-----~~---~~~~~~~Dl~d~~~~~~~-~ 83 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA---EGHYIIASDWKKN----EHMSED-----MF---CHEFHLVDLRVMENCLKV-T 83 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh---CCCEEEEEEeccc----cccccc-----cc---cceEEECCCCCHHHHHHH-H
Confidence 4568999999 8999999999976 4899999975321 111110 11 124578999998887764 3
Q ss_pred CCccEEEEeeC
Q 004087 720 ETFDSILILAD 730 (774)
Q Consensus 720 ~~aD~vIiLtd 730 (774)
..+|.||=++.
T Consensus 84 ~~~D~Vih~Aa 94 (370)
T PLN02695 84 KGVDHVFNLAA 94 (370)
T ss_pred hCCCEEEEccc
Confidence 46899998874
No 184
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=76.58 E-value=17 Score=35.09 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=48.1
Q ss_pred CeEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc--ccCCccEEEEEeCCCCHHHHhccCcc
Q 004087 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVS 459 (774)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~--~~~~~~V~~I~Gd~t~~e~L~rAgI~ 459 (774)
++|.|+|. |..+..++-.|.... -...++|+|.+++..+....++.. .+...++ ..+. .+.++ ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~----l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~-~~~~~-----~~ 68 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG----LADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITS-GDYEA-----LK 68 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT----TSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEE-SSGGG-----GT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC----CCCceEEeccCcccceeeehhhhhhhhhccccc--cccc-ccccc-----cc
Confidence 58999999 998888888887642 346799999987655544433311 1112222 2222 34444 45
Q ss_pred cccEEEEecCC
Q 004087 460 KARAIIVLASD 470 (774)
Q Consensus 460 ~A~aVIiltdd 470 (774)
+||.||++++.
T Consensus 69 ~aDivvitag~ 79 (141)
T PF00056_consen 69 DADIVVITAGV 79 (141)
T ss_dssp TESEEEETTST
T ss_pred cccEEEEeccc
Confidence 78899998876
No 185
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=76.54 E-value=23 Score=37.97 Aligned_cols=72 Identities=24% Similarity=0.218 Sum_probs=45.2
Q ss_pred CeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCC----CCHHHHhccCc
Q 004087 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSP----LILADLKKVSV 458 (774)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~----t~~e~L~rAgI 458 (774)
++|.|+|.|..|..++..|... ++.|.+++++++..+...+. +..+. .|+. ....++.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~------g~~~~--~~~~~~~~~~~~~~~~--~ 64 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGAHLDALNEN------GLRLE--DGEITVPVLAADDPAE--L 64 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChHHHHHHHHc------CCccc--CCceeecccCCCChhH--c
Confidence 3799999999998888888753 47889999877666654321 11110 1211 01112222 3
Q ss_pred ccccEEEEecCC
Q 004087 459 SKARAIIVLASD 470 (774)
Q Consensus 459 ~~A~aVIiltdd 470 (774)
+.+|.||+++..
T Consensus 65 ~~~d~vila~k~ 76 (304)
T PRK06522 65 GPQDLVILAVKA 76 (304)
T ss_pred CCCCEEEEeccc
Confidence 789999999864
No 186
>PRK06138 short chain dehydrogenase; Provisional
Probab=76.51 E-value=23 Score=36.39 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=54.2
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++..++ +..+...+. + . .+..+.++++|.+|.+.++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~---~-~~~~~~~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAR---EGARVVVADRDA--EAAERVAAA-I---A-AGGRAFARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH---CCCeEEEecCCH--HHHHHHHHH-H---h-cCCeEEEEEcCCCCHHHHHHHHHH
Confidence 357999998 5789999999976 489999988653 323332220 0 0 123456789999999887642
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 75 i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 75 VAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 23477988887764
No 187
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.49 E-value=10 Score=41.26 Aligned_cols=82 Identities=22% Similarity=0.200 Sum_probs=54.3
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...+||.|.+. .|..++++|... +..|+++.++++..++..+++.....+..+.++..|.++.+..+++-
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~------G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA------GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 45788889876 578888999753 46788888887766655544321122345788899999988877542
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 88 ~~~~~~iD~li~nAG 102 (313)
T PRK05854 88 RAEGRPIHLLINNAG 102 (313)
T ss_pred HHhCCCccEEEECCc
Confidence 123566665553
No 188
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=76.46 E-value=5.3 Score=46.11 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=32.1
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChh
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK 680 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~ 680 (774)
.++|+|+|+|+.|..+++.|.+. |..|++.+..+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~---G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL---GAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC---CCeEEEEcCCCCc
Confidence 57899999999999999999874 9999999987655
No 189
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.45 E-value=11 Score=38.84 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=55.9
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...++|.|.+. .+..++++|.+. +..|++++++++..+........ +.++.++.+|.++++.++++-
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789998765 578899998753 46788889888766554433211 345788999999999987652
Q ss_pred ---cccccEEEEecCC
Q 004087 458 ---VSKARAIIVLASD 470 (774)
Q Consensus 458 ---I~~A~aVIiltdd 470 (774)
....|.||-.+..
T Consensus 76 ~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 76 LERFGSVDILVNNAGT 91 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1356888877753
No 190
>PRK06101 short chain dehydrogenase; Provisional
Probab=76.28 E-value=8.9 Score=39.66 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=45.3
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
+.++|.|.+. .|..++++|.. .|..|++++++++.++...+. ..++.++.+|.++++.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~------~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK------QGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh------CCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHH
Confidence 4588999765 47778999975 246788899888766554321 23577889999999988775
No 191
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.21 E-value=9.7 Score=39.34 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=53.5
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ +..+.+.+. +. . .+..+..+.+|.+|++.++++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~~-~~--~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAK---EGAKVVIADLND--EAAAAAAEA-LQ--K-AGGKAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHH-HH--h-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 58999997 7789999999975 499999998654 323322210 00 0 123355689999999977542
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 76 ~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 76 VETFGGVDILVNNAGI 91 (258)
T ss_pred HHHcCCCCEEEECCCC
Confidence 23467988887753
No 192
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=76.12 E-value=4.8 Score=44.94 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCC-HHHHHHHHHHHhhccCCC--CC-C-CCcc---CceeeehhhHhH-HHHHHHH
Q 004087 289 LALLFATIFLIIFGGLALYAVSDSS-FAEALWLSWTFVADSGNH--AD-R-VGTG---PRIVSVSISSGG-MLIFAMM 357 (774)
Q Consensus 289 l~Ll~~~l~lil~g~~~~~~ie~~s-~~dAly~~~~TltTvGyg--d~-~-~t~~---gRi~~v~lil~G-l~ifa~l 357 (774)
+.++++.++++++++..+...+... +.++++-++..+.|+|.+ .. + -+.. ++++.+++|+.| +-+++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRle~~~~l 346 (354)
T PF02386_consen 269 FAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRLEILPVL 346 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCccHHHHH
Confidence 3444455555666666665555433 799999999999999864 32 2 2444 788777777666 4444433
No 193
>PRK08309 short chain dehydrogenase; Provisional
Probab=75.95 E-value=12 Score=37.68 Aligned_cols=65 Identities=18% Similarity=0.060 Sum_probs=44.8
Q ss_pred CeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004087 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
++++|.|....+..+++.|... +..|++..++++..+....... ....+.++.+|..|++.++++
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~------G~~V~v~~R~~~~~~~l~~~l~---~~~~i~~~~~Dv~d~~sv~~~ 65 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK------GFHVSVIARREVKLENVKREST---TPESITPLPLDYHDDDALKLA 65 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHhh---cCCcEEEEEccCCCHHHHHHH
Confidence 4789999877777888888763 4677788888776665433221 123567788888888877654
No 194
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=75.92 E-value=10 Score=38.95 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=27.7
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCe-EEEEecC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSE-LWMLNEV 677 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~-v~II~~~ 677 (774)
..+|+|+|.|..|..+++.|... |.. +++++.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~---GVg~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA---GIDSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEECC
Confidence 46899999999999999999763 655 8888854
No 195
>PRK06940 short chain dehydrogenase; Provisional
Probab=75.92 E-value=9.4 Score=40.62 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=53.1
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI--- 458 (774)
+..+||.|.+..+..++++|. . +..|++++++++..+...+++.. .+.++.++.+|.++++.++++--
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~------G~~Vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-A------GKKVLLADYNEENLEAAAKTLRE--AGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-C------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 457888998877888998883 1 46788888887665554433211 13457788999999888765411
Q ss_pred --ccccEEEEecCC
Q 004087 459 --SKARAIIVLASD 470 (774)
Q Consensus 459 --~~A~aVIiltdd 470 (774)
..-|.+|-.+.-
T Consensus 73 ~~g~id~li~nAG~ 86 (275)
T PRK06940 73 TLGPVTGLVHTAGV 86 (275)
T ss_pred hcCCCCEEEECCCc
Confidence 245677766643
No 196
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=75.91 E-value=3.7 Score=39.44 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=44.9
Q ss_pred EEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCC-CceEEEEecCcccHhhhhcCCCCCcc
Q 004087 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESLPLETFD 723 (774)
Q Consensus 645 ILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~-~i~V~~i~GD~td~~~L~~~~I~~aD 723 (774)
|+|+|.|.+|..++-.|.+ .|.+|+++... + +.+.+.+.|+....-. +..+ ...-...+. ....+.+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~---~g~~V~l~~r~--~-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ---AGHDVTLVSRS--P-RLEAIKEQGLTITGPDGDETV-QPPIVISAP----SADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH---TTCEEEEEESH--H-HHHHHHHHCEEEEETTEEEEE-EEEEEESSH----GHHHSTES
T ss_pred CEEECcCHHHHHHHHHHHH---CCCceEEEEcc--c-cHHhhhheeEEEEecccceec-ccccccCcc----hhccCCCc
Confidence 7899999999999999986 49999999963 2 5555655443211001 1111 011111111 34678899
Q ss_pred EEEEeeC
Q 004087 724 SILILAD 730 (774)
Q Consensus 724 ~vIiLtd 730 (774)
.+++.+-
T Consensus 70 ~viv~vK 76 (151)
T PF02558_consen 70 LVIVAVK 76 (151)
T ss_dssp EEEE-SS
T ss_pred EEEEEec
Confidence 8888763
No 197
>PRK08219 short chain dehydrogenase; Provisional
Probab=75.85 E-value=17 Score=36.76 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=52.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--CC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 719 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~I 719 (774)
++++|.|+ |.+|..+++.|.+ . .+|.++...+ +..+.+.+ .+++ +.+++||.+|++.++++ .+
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~---~-~~V~~~~r~~--~~~~~~~~------~~~~--~~~~~~D~~~~~~~~~~~~~~ 69 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP---T-HTLLLGGRPA--ERLDELAA------ELPG--ATPFPVDLTDPEAIAAAVEQL 69 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh---h-CCEEEEeCCH--HHHHHHHH------Hhcc--ceEEecCCCCHHHHHHHHHhc
Confidence 57999997 6789999999975 3 6788887643 33344432 1223 34689999999888762 23
Q ss_pred CCccEEEEeeCC
Q 004087 720 ETFDSILILADE 731 (774)
Q Consensus 720 ~~aD~vIiLtdd 731 (774)
+..|.+|-.+..
T Consensus 70 ~~id~vi~~ag~ 81 (227)
T PRK08219 70 GRLDVLVHNAGV 81 (227)
T ss_pred CCCCEEEECCCc
Confidence 468998888764
No 198
>PRK07454 short chain dehydrogenase; Provisional
Probab=75.80 E-value=13 Score=38.30 Aligned_cols=79 Identities=20% Similarity=0.091 Sum_probs=52.6
Q ss_pred CeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
..++|.|.+ ..+..++++|.+. +..|++++++++..+...+... . .+.++.++.+|.++++.+.++-
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKA------GWDLALVARSQDALEALAAELR-S-TGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH-h-CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 468888874 4678889999752 4678888888766555433221 1 1346788999999998876541
Q ss_pred --cccccEEEEecC
Q 004087 458 --VSKARAIIVLAS 469 (774)
Q Consensus 458 --I~~A~aVIiltd 469 (774)
..+.|.+|-.+.
T Consensus 79 ~~~~~id~lv~~ag 92 (241)
T PRK07454 79 EQFGCPDVLINNAG 92 (241)
T ss_pred HHcCCCCEEEECCC
Confidence 124677777664
No 199
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=75.77 E-value=5.1 Score=45.89 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=34.7
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCC-CeEEEEecCChhHHHHHhhc
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~G-s~v~II~~~p~~er~~~l~~ 688 (774)
.++|+|+|.|..|..++..|.+. | .+++|++.. .+|.+.+++
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~---g~~~I~V~nRt--~~ra~~La~ 223 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTAL---APKQIMLANRT--IEKAQKITS 223 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEECCC--HHHHHHHHH
Confidence 45899999999999999999763 6 579999875 478888876
No 200
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=75.75 E-value=7 Score=40.13 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChh-----------------HHHHHhhcCCCCcCCCCCceEE
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK-----------------EREKKLTDGGLDISGLMNIKLV 702 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~-----------------er~~~l~~~g~~~~~l~~i~V~ 702 (774)
...+|+|+|.|..|..+++.|... |. ++++++.+.-+ .|.+.+++. +. .-.+++.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~---Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~-l~-~~np~v~i~ 94 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA---GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQR-LR-ELNSDIQVT 94 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc---CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHH-HH-HhCCCCEEE
Confidence 456899999999999999999864 75 89999865211 112222210 00 012466665
Q ss_pred EEecCcccHhhhhcCCCCCccEEEEeeC
Q 004087 703 HREGNAVIRRHLESLPLETFDSILILAD 730 (774)
Q Consensus 703 ~i~GD~td~~~L~~~~I~~aD~vIiLtd 730 (774)
.+...... +.+.+ -+.++|.||..+|
T Consensus 95 ~~~~~i~~-~~~~~-~~~~~D~Vi~~~d 120 (202)
T TIGR02356 95 ALKERVTA-ENLEL-LINNVDLVLDCTD 120 (202)
T ss_pred EehhcCCH-HHHHH-HHhCCCEEEECCC
Confidence 55555443 33332 3678997777654
No 201
>PRK04457 spermidine synthase; Provisional
Probab=75.71 E-value=13 Score=39.72 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
..+++|+.+|.|.- . ++..+.++. ++.+++.+|.+| +-.+...+ -+..... +-.+.+++||+. +.+++..
T Consensus 65 ~~~~~vL~IG~G~G-~-l~~~l~~~~-p~~~v~~VEidp--~vi~~A~~-~f~~~~~-~~rv~v~~~Da~--~~l~~~~- 134 (262)
T PRK04457 65 PRPQHILQIGLGGG-S-LAKFIYTYL-PDTRQTAVEINP--QVIAVARN-HFELPEN-GERFEVIEADGA--EYIAVHR- 134 (262)
T ss_pred CCCCEEEEECCCHh-H-HHHHHHHhC-CCCeEEEEECCH--HHHHHHHH-HcCCCCC-CCceEEEECCHH--HHHHhCC-
Confidence 34678999998843 3 555555443 688999999865 33333222 1110011 123556899985 4565443
Q ss_pred CCccEEEE
Q 004087 720 ETFDSILI 727 (774)
Q Consensus 720 ~~aD~vIi 727 (774)
+.||.|++
T Consensus 135 ~~yD~I~~ 142 (262)
T PRK04457 135 HSTDVILV 142 (262)
T ss_pred CCCCEEEE
Confidence 68998876
No 202
>PRK06482 short chain dehydrogenase; Provisional
Probab=75.71 E-value=18 Score=38.16 Aligned_cols=77 Identities=13% Similarity=-0.001 Sum_probs=53.8
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
++++|.|+ |.+|..+++.|.+ .|..|.++... +++.+.+.+ .+. -.+..+.+|.+|.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~---~g~~v~~~~r~--~~~~~~~~~------~~~-~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLA---RGDRVAATVRR--PDALDDLKA------RYG-DRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------hcc-CceEEEEccCCCHHHHHHHHHHH
Confidence 57999997 6789999999976 48999888864 344444443 111 1245689999999877642
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 71 ~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 71 FAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHcCCCCEEEECCCC
Confidence 23567988888764
No 203
>PRK10637 cysG siroheme synthase; Provisional
Probab=75.60 E-value=24 Score=40.95 Aligned_cols=86 Identities=17% Similarity=0.036 Sum_probs=55.9
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
...+++|+|.|+.+.+=++.|.... ..+.|+...-.+++..... ..++.++..+.. +++| +.
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~g-----a~v~visp~~~~~~~~l~~-------~~~i~~~~~~~~-~~dl-----~~ 72 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAG-----ARLTVNALAFIPQFTAWAD-------AGMLTLVEGPFD-ESLL-----DT 72 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCCC-hHHh-----CC
Confidence 4569999999999888778887642 2344444332234443322 235777776653 4555 56
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004087 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (774)
Q Consensus 461 A~aVIiltdd~~~~~sDa~NI~~~Laar~l 490 (774)
|+.||+.|+| .+.|-.+.-.++..
T Consensus 73 ~~lv~~at~d------~~~n~~i~~~a~~~ 96 (457)
T PRK10637 73 CWLAIAATDD------DAVNQRVSEAAEAR 96 (457)
T ss_pred CEEEEECCCC------HHHhHHHHHHHHHc
Confidence 8889999976 56777777777664
No 204
>PRK08264 short chain dehydrogenase; Validated
Probab=75.46 E-value=21 Score=36.55 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=51.6
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCC-eEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc--C
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES--L 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~--~ 717 (774)
.++++|.|+ |.+|..+++.|.+ .|. .|.++...+.+ .+. . ...+..+.+|.+|.+.+++ .
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~---~G~~~V~~~~r~~~~--~~~--~---------~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLA---RGAAKVYAAARDPES--VTD--L---------GPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCcccEEEEecChhh--hhh--c---------CCceEEEEecCCCHHHHHHHHH
Confidence 357999997 7889999999976 487 88888765322 111 1 1124468999999888765 2
Q ss_pred CCCCccEEEEeeCC
Q 004087 718 PLETFDSILILADE 731 (774)
Q Consensus 718 ~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+.-
T Consensus 70 ~~~~id~vi~~ag~ 83 (238)
T PRK08264 70 AASDVTILVNNAGI 83 (238)
T ss_pred hcCCCCEEEECCCc
Confidence 24467988888764
No 205
>PRK06949 short chain dehydrogenase; Provisional
Probab=75.45 E-value=14 Score=38.29 Aligned_cols=81 Identities=23% Similarity=0.165 Sum_probs=54.1
Q ss_pred ccCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 004087 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (774)
Q Consensus 381 ~k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI- 458 (774)
...+++|.|.+. .+..++++|... +..|+++.++++.++....++. -...++.++.+|.+++++++++--
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQA------GAKVVLASRRVERLKELRAEIE--AEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHH
Confidence 346889998754 688888998752 4678888888776665443221 112357789999999888766421
Q ss_pred -----ccccEEEEecC
Q 004087 459 -----SKARAIIVLAS 469 (774)
Q Consensus 459 -----~~A~aVIiltd 469 (774)
...|.+|-++.
T Consensus 80 ~~~~~~~~d~li~~ag 95 (258)
T PRK06949 80 AETEAGTIDILVNNSG 95 (258)
T ss_pred HHHhcCCCCEEEECCC
Confidence 24577777665
No 206
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=75.40 E-value=4.7 Score=46.24 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=34.0
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChhHHHHHhhc
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~er~~~l~~ 688 (774)
..++|+|+|.|.+|..+++.|... |. .|++++.. .+|++.+++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~---G~~~V~v~~r~--~~ra~~la~ 224 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK---GVRKITVANRT--LERAEELAE 224 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC---CCCeEEEEeCC--HHHHHHHHH
Confidence 346899999999999999999753 75 78888864 477776665
No 207
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.36 E-value=14 Score=38.04 Aligned_cols=81 Identities=20% Similarity=0.154 Sum_probs=54.5
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
.++++|.|.+. .+..++++|.+. +..|++++++++..+....+.. ..+.++.++.+|.++++.++++=-
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~------G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE------GVNVGLLARTEENLKAVAEEVE--AYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--HhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46789999775 477788888752 4678888888766555433321 113468888999999988766411
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
...|.+|-++..
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 79 KNELGSIDILINNAGI 94 (239)
T ss_pred HHHcCCccEEEEcCcc
Confidence 256777776643
No 208
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=75.30 E-value=19 Score=37.00 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=53.6
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh--HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~--er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~- 717 (774)
.++|+|.|+ |.+|..+++.|.+ .|.+|.++..++.+ +....+.+ .+..+.++.+|.+|++.+++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~---~g~~V~~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAA---DGAEVIVVDICGDDAAATAELVEA--------AGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEEECCCCCHHHHHHHH
Confidence 457999996 6789999999976 48999999865421 22222322 112355789999999877652
Q ss_pred -----CCCCccEEEEeeCC
Q 004087 718 -----PLETFDSILILADE 731 (774)
Q Consensus 718 -----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 75 ~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 75 AAGVEDFGRLDILVANAGI 93 (251)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 12368988888753
No 209
>PRK07062 short chain dehydrogenase; Provisional
Probab=75.25 E-value=12 Score=39.03 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=53.1
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA---- 456 (774)
...++|.|.+. .+..++++|... +..|+++.++++..+...++....+.+.++.++.+|.++++.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA------GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 35788888865 578888888753 4678888888766655443321112234577888899998877653
Q ss_pred --CcccccEEEEecC
Q 004087 457 --SVSKARAIIVLAS 469 (774)
Q Consensus 457 --gI~~A~aVIiltd 469 (774)
.....|.+|-.+.
T Consensus 82 ~~~~g~id~li~~Ag 96 (265)
T PRK07062 82 EARFGGVDMLVNNAG 96 (265)
T ss_pred HHhcCCCCEEEECCC
Confidence 1234567766664
No 210
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.19 E-value=16 Score=38.13 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=53.4
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|..|.++...+ ++.+.+.+. + .. .+..+..+.+|.+|++.++++
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-i--~~-~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGE---AGARVVLSARKA--EELEEAAAH-L--EA-LGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCeEEEEEccCCCHHHHHHHHHH
Confidence 468999997 6789999999976 489998888653 222222210 0 01 122345689999998887431
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 12467999888764
No 211
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=75.11 E-value=4 Score=47.07 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=30.9
Q ss_pred CCCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 639 PKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 639 ~~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
+...++|+|+|+|..|...+..|.+. |.+|++++..
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~---g~~V~lie~~ 172 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARK---GYDVTIFEAR 172 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Confidence 34567999999999999999999763 8999999864
No 212
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=75.06 E-value=12 Score=41.02 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=49.2
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcc-cHhhhhcCCCC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAV-IRRHLESLPLE 720 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~t-d~~~L~~~~I~ 720 (774)
++|+|.|+ |-+|..+++.|.+. .|.+|+.++..+ ++...+.. .++ +.+++||.+ +.+.+.++ +.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~r~~--~~~~~~~~-------~~~--~~~~~~Dl~~~~~~~~~~-~~ 67 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET--TDWEVYGMDMQT--DRLGDLVN-------HPR--MHFFEGDITINKEWIEYH-VK 67 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEeCcH--HHHHHhcc-------CCC--eEEEeCCCCCCHHHHHHH-Hc
Confidence 37999998 99999999999652 368999887532 22222211 122 456899998 66666654 45
Q ss_pred CccEEEEee
Q 004087 721 TFDSILILA 729 (774)
Q Consensus 721 ~aD~vIiLt 729 (774)
.+|.||=++
T Consensus 68 ~~d~ViH~a 76 (347)
T PRK11908 68 KCDVILPLV 76 (347)
T ss_pred CCCEEEECc
Confidence 789888554
No 213
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=74.99 E-value=4.4 Score=46.44 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=34.2
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCC-CeEEEEecCChhHHHHHhhc
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~G-s~v~II~~~p~~er~~~l~~ 688 (774)
..++|+|+|.|.+|..+++.|.+. | .+|++++..+ +|++.+++
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~---G~~~V~v~~rs~--~ra~~la~ 222 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRK---GVGKILIANRTY--ERAEDLAK 222 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHC---CCCEEEEEeCCH--HHHHHHHH
Confidence 346899999999999999999763 7 7899998654 66666654
No 214
>PRK08251 short chain dehydrogenase; Provisional
Probab=74.80 E-value=24 Score=36.38 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=54.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc-----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 716 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~----- 716 (774)
+.++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + ....++..+..+.+|.+|++.+++
T Consensus 3 k~vlItGas~giG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~~-~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAA---KGRDLALCARRT--DRLEELKAE-L-LARYPGIKVAVAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H-HhhCCCceEEEEEcCCCCHHHHHHHHHHH
Confidence 57899997 5679999999976 488998887654 333333220 0 002234566778999999987643
Q ss_pred -CCCCCccEEEEeeC
Q 004087 717 -LPLETFDSILILAD 730 (774)
Q Consensus 717 -~~I~~aD~vIiLtd 730 (774)
......|.+|..++
T Consensus 76 ~~~~~~id~vi~~ag 90 (248)
T PRK08251 76 RDELGGLDRVIVNAG 90 (248)
T ss_pred HHHcCCCCEEEECCC
Confidence 22456788888875
No 215
>PRK07063 short chain dehydrogenase; Provisional
Probab=74.73 E-value=13 Score=38.75 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=54.3
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
...++|.|.+. .+..++++|.+. +..|++++++++..+...++......+.++.++.+|.++++.++++--
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE------GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHH
Confidence 34788888765 477788888753 467888888877766554433111123457788999999888765411
Q ss_pred ----ccccEEEEecC
Q 004087 459 ----SKARAIIVLAS 469 (774)
Q Consensus 459 ----~~A~aVIiltd 469 (774)
...|.+|-.+.
T Consensus 81 ~~~~g~id~li~~ag 95 (260)
T PRK07063 81 EEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHhCCCcEEEECCC
Confidence 24677777664
No 216
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=74.71 E-value=9.6 Score=41.92 Aligned_cols=73 Identities=16% Similarity=0.057 Sum_probs=49.0
Q ss_pred CeEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCC-CHHHHhccCccc
Q 004087 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL-ILADLKKVSVSK 460 (774)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t-~~e~L~rAgI~~ 460 (774)
++|+|.|. |-.|..++++|.... ++.|+.+++..+...... ...++.++.||.. +.+.+.++ +++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~-----~~~V~~~~r~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~-~~~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT-----DWEVYGMDMQTDRLGDLV-------NHPRMHFFEGDITINKEWIEYH-VKK 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC-----CCeEEEEeCcHHHHHHhc-------cCCCeEEEeCCCCCCHHHHHHH-HcC
Confidence 47999998 556888999987531 356777776554332221 1235888999997 66667654 457
Q ss_pred ccEEEEec
Q 004087 461 ARAIIVLA 468 (774)
Q Consensus 461 A~aVIilt 468 (774)
+|.||=++
T Consensus 69 ~d~ViH~a 76 (347)
T PRK11908 69 CDVILPLV 76 (347)
T ss_pred CCEEEECc
Confidence 89888544
No 217
>PRK06924 short chain dehydrogenase; Provisional
Probab=74.66 E-value=7.9 Score=40.05 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=43.8
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~ 716 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+. ++.+.+.+ .. +..+.++.+|.+|.+.+++
T Consensus 2 k~vlItGasggiG~~ia~~l~~---~g~~V~~~~r~~~-~~~~~~~~------~~-~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLE---KGTHVISISRTEN-KELTKLAE------QY-NSNLTFHSLDLQDVHELET 65 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHh---cCCEEEEEeCCch-HHHHHHHh------cc-CCceEEEEecCCCHHHHHH
Confidence 47899997 6789999999976 4899998886542 33333332 11 1234568999999987753
No 218
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.61 E-value=15 Score=37.95 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=51.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--C-
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 718 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~- 718 (774)
++++|.|+ |.+|..+++.|.+ .|..|.++..++ ++.+.+.+.. ....+..+.++++|.+|++.+++. .
T Consensus 2 ~~vlItGas~giG~~~a~~l~~---~G~~Vi~~~r~~--~~~~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAA---AGARLYLAARDV--ERLERLADDL---RARGAVAVSTHELDILDTASHAAFLDSL 73 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh---cCCEEEEEeCCH--HHHHHHHHHH---HHhcCCeEEEEecCCCChHHHHHHHHHH
Confidence 46899996 6789999999976 489999988654 3222222100 001122456789999998877542 1
Q ss_pred CCCccEEEEeeC
Q 004087 719 LETFDSILILAD 730 (774)
Q Consensus 719 I~~aD~vIiLtd 730 (774)
.+..|.+|..++
T Consensus 74 ~~~~d~vv~~ag 85 (243)
T PRK07102 74 PALPDIVLIAVG 85 (243)
T ss_pred hhcCCEEEECCc
Confidence 234688887654
No 219
>PLN02427 UDP-apiose/xylose synthase
Probab=74.55 E-value=10 Score=42.51 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=54.7
Q ss_pred ccCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004087 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (774)
Q Consensus 381 ~k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~ 459 (774)
..++|+|.|.+. .|..++++|...+ ++.|+.++.+.+..+...... ......++.++.||..+.+.++++ ++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~-----g~~V~~l~r~~~~~~~l~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~-~~ 85 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET-----PHKVLALDVYNDKIKHLLEPD-TVPWSGRIQFHRINIKHDSRLEGL-IK 85 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC-----CCEEEEEecCchhhhhhhccc-cccCCCCeEEEEcCCCChHHHHHH-hh
Confidence 345899999754 5788999998631 356777776654443322110 000123688999999999998876 45
Q ss_pred cccEEEEecC
Q 004087 460 KARAIIVLAS 469 (774)
Q Consensus 460 ~A~aVIiltd 469 (774)
.+|.||=++.
T Consensus 86 ~~d~ViHlAa 95 (386)
T PLN02427 86 MADLTINLAA 95 (386)
T ss_pred cCCEEEEccc
Confidence 6899998775
No 220
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=74.23 E-value=13 Score=40.19 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=60.0
Q ss_pred CCCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCC---CceEEEEecCcccHhhhh
Q 004087 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM---NIKLVHREGNAVIRRHLE 715 (774)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~---~i~V~~i~GD~td~~~L~ 715 (774)
...++++|-|. +.+|..+++.|.+ +|.++.++.. .++|-+.+++ +++ .+.+.++.-|-++.+.++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~---~g~~liLvaR--~~~kL~~la~------~l~~~~~v~v~vi~~DLs~~~~~~ 72 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLAR---RGYNLILVAR--REDKLEALAK------ELEDKTGVEVEVIPADLSDPEALE 72 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHH---CCCEEEEEeC--cHHHHHHHHH------HHHHhhCceEEEEECcCCChhHHH
Confidence 35678999999 5689999999987 4999999996 4677776665 222 456778999999988876
Q ss_pred cCC------CCCccEEEEeeCC
Q 004087 716 SLP------LETFDSILILADE 731 (774)
Q Consensus 716 ~~~------I~~aD~vIiLtdd 731 (774)
++- -...|.+|-=++-
T Consensus 73 ~l~~~l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 73 RLEDELKERGGPIDVLVNNAGF 94 (265)
T ss_pred HHHHHHHhcCCcccEEEECCCc
Confidence 532 2357777766654
No 221
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=74.18 E-value=17 Score=37.46 Aligned_cols=80 Identities=15% Similarity=0.054 Sum_probs=52.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
+.++|.|+ |.+|..+++.|.+ .|..|.++...+ ++.+.+.+ .+. . .+..+..+.+|.+|++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~-~l~--~-~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAK---DGFAVAVADLNE--ETAKETAK-EIN--Q-AGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH-HHH--h-cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 36899997 6789999999976 489998887643 33332221 000 0 122345689999999877542
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHcCCCCEEEECCCc
Confidence 23457888887753
No 222
>PRK08219 short chain dehydrogenase; Provisional
Probab=74.14 E-value=11 Score=37.99 Aligned_cols=75 Identities=15% Similarity=0.043 Sum_probs=51.8
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--c
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--S 459 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI--~ 459 (774)
++++|.|.+. .+..++++|... ..|++++++++..+..... ..++.+++||.++++.++++-- .
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------HTLLLGGRPAERLDELAAE------LPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------CCEEEEeCCHHHHHHHHHH------hccceEEecCCCCHHHHHHHHHhcC
Confidence 5789998765 577788888752 4577778777655443221 1247789999999999887432 3
Q ss_pred cccEEEEecCC
Q 004087 460 KARAIIVLASD 470 (774)
Q Consensus 460 ~A~aVIiltdd 470 (774)
..+.+|-+...
T Consensus 71 ~id~vi~~ag~ 81 (227)
T PRK08219 71 RLDVLVHNAGV 81 (227)
T ss_pred CCCEEEECCCc
Confidence 57888877654
No 223
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.12 E-value=9 Score=40.33 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=53.1
Q ss_pred CceEEEEcc---cccHHHHHHHHHHhcCCCCeEEEEecC-ChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc-
Q 004087 642 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES- 716 (774)
Q Consensus 642 ~~rILI~Gw---g~~g~~l~~~L~~~l~~Gs~v~II~~~-p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~- 716 (774)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++... ..+++.+.+.+ .++...+..+..|.+|++..++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~---~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHN---AGAKLVFTYAGERLEKEVRELAD------TLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEecCcccchHHHHHHHH------HcCCCceEEEecCCCCHHHHHHH
Confidence 468999998 4899999999986 49999888532 12334444443 2222334567899999987643
Q ss_pred -----CCCCCccEEEEeeC
Q 004087 717 -----LPLETFDSILILAD 730 (774)
Q Consensus 717 -----~~I~~aD~vIiLtd 730 (774)
+.....|.+|--++
T Consensus 78 ~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHhCCCccEEEECcc
Confidence 22356788776543
No 224
>PLN02650 dihydroflavonol-4-reductase
Probab=74.10 E-value=13 Score=40.88 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=52.5
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
+.+|+|.|... .|..++++|... +..|++...+++..+.........-...++.++.||..+.+.+.++ ++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~ 77 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER------GYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRG 77 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC------CCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhC
Confidence 46899999754 588899999763 3566665555433332211100000112578899999999888765 456
Q ss_pred ccEEEEecCC
Q 004087 461 ARAIIVLASD 470 (774)
Q Consensus 461 A~aVIiltdd 470 (774)
++.||-++..
T Consensus 78 ~d~ViH~A~~ 87 (351)
T PLN02650 78 CTGVFHVATP 87 (351)
T ss_pred CCEEEEeCCC
Confidence 8999988764
No 225
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.09 E-value=10 Score=40.18 Aligned_cols=74 Identities=19% Similarity=0.102 Sum_probs=51.2
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--I 458 (774)
...++|.|.+. .|..++++|.+. +..|++++++++.++.... .++.++.+|.++++.++++- +
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~------G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD------GWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHH
Confidence 35799999854 577888888752 4788888888876654422 24678899999998776541 1
Q ss_pred -----ccccEEEEecC
Q 004087 459 -----SKARAIIVLAS 469 (774)
Q Consensus 459 -----~~A~aVIiltd 469 (774)
..-|.+|-.+.
T Consensus 70 ~~~~~g~id~li~~Ag 85 (277)
T PRK05993 70 LELSGGRLDALFNNGA 85 (277)
T ss_pred HHHcCCCccEEEECCC
Confidence 23477776654
No 226
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=73.76 E-value=5.9 Score=43.09 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=29.8
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
.++++|+|.|++|..+++.|... |.+|++.+..+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~---G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL---GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC---CCEEEEEeCCH
Confidence 46899999999999999999864 88999998754
No 227
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=73.56 E-value=13 Score=35.78 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=54.8
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d--~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg-- 457 (774)
++++|.|.+. .|..++++|... ++..|+++.++ .+..+....+.. ..+.++.+++.|.++++.++++-
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-----g~~~v~~~~r~~~~~~~~~l~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-----GARVVILTSRSEDSEGAQELIQELK--APGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-----TTEEEEEEESSCHHHHHHHHHHHHH--HTTSEEEEEESETTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CceEEEEeeeccccccccccccccc--ccccccccccccccccccccccccc
Confidence 3789999776 578889998864 24677777776 444554444332 23467899999999998877641
Q ss_pred c----ccccEEEEecCC
Q 004087 458 V----SKARAIIVLASD 470 (774)
Q Consensus 458 I----~~A~aVIiltdd 470 (774)
+ ..-+.+|-.+.-
T Consensus 74 ~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccc
Confidence 1 245677777665
No 228
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.32 E-value=15 Score=37.69 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=53.6
Q ss_pred cCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 004087 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (774)
Q Consensus 382 k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLi-d~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI- 458 (774)
.++++|.|.. ..+..+++.|... +..|+++ .++++..+...+.... .+.++.++.+|.++++.++++--
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~------g~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE------GAKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHH
Confidence 3589999975 4578888888752 4667777 8877665544433211 23458889999999998766421
Q ss_pred -----ccccEEEEecCC
Q 004087 459 -----SKARAIIVLASD 470 (774)
Q Consensus 459 -----~~A~aVIiltdd 470 (774)
...+.||..+..
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 146777776653
No 229
>PRK06125 short chain dehydrogenase; Provisional
Probab=73.31 E-value=20 Score=37.46 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=52.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--C
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 718 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~ 718 (774)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + ....+..+..+.+|.+|++.++++ .
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~~-l--~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAA---EGCHLHLVARDA--DALEALAAD-L--RAAHGVDVAVHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H--HhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 368999998 5689999999986 489999988643 333332210 0 001122345688999998876541 2
Q ss_pred CCCccEEEEeeCC
Q 004087 719 LETFDSILILADE 731 (774)
Q Consensus 719 I~~aD~vIiLtdd 731 (774)
....|.+|-.+..
T Consensus 79 ~g~id~lv~~ag~ 91 (259)
T PRK06125 79 AGDIDILVNNAGA 91 (259)
T ss_pred hCCCCEEEECCCC
Confidence 4578888887653
No 230
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=73.30 E-value=19 Score=39.83 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=66.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCC-----hhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhh
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP-----EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 715 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p-----~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~ 715 (774)
.++|||.|+ |=+|...+-+|.+ .|..|.+++.-- .-.|.+.+.. +.-.|.+.+||..|.+.|+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~---~gy~v~~vDNl~n~~~~sl~r~~~l~~--------~~~~v~f~~~Dl~D~~~L~ 70 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLK---RGYGVVIVDNLNNSYLESLKRVRQLLG--------EGKSVFFVEGDLNDAEALE 70 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHh---CCCcEEEEecccccchhHHHHHHHhcC--------CCCceEEEEeccCCHHHHH
Confidence 468999987 7788888887765 599999999621 1123333332 1234567999999999998
Q ss_pred c-CCCCCccEEEEeeCCC-----CcCCcCCCcHHHHHHHHHHHHHhh
Q 004087 716 S-LPLETFDSILILADES-----LEDSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 716 ~-~~I~~aD~vIiLtdd~-----~~~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
+ -....+|+||=++.+. ++.+-.-.+.....|+-++.-+.+
T Consensus 71 kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~ 117 (343)
T KOG1371|consen 71 KLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKA 117 (343)
T ss_pred HHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHH
Confidence 7 3466799999887642 333323344444444444444433
No 231
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=73.27 E-value=13 Score=38.89 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=51.9
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
.+.++|.|.+. .+..++++|.+. +..|++++++++..+...++. +.++.++++|.++++.++++-
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAE------GARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHH
Confidence 45788999865 577788888753 467888898887766554332 234778889999888776541
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 75 ~~~~g~id~li~~ag 89 (263)
T PRK06200 75 VDAFGKLDCFVGNAG 89 (263)
T ss_pred HHhcCCCCEEEECCC
Confidence 124566665553
No 232
>PRK07677 short chain dehydrogenase; Provisional
Probab=73.24 E-value=30 Score=35.84 Aligned_cols=79 Identities=8% Similarity=0.101 Sum_probs=51.4
Q ss_pred ceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
+.++|.|++ .+|..+++.|.+ .|..|.+++.++ ++.+.+.+. + ... .-.+..+.+|.+|++.++++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~---~G~~Vi~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAE---EGANVVITGRTK--EKLEEAKLE-I--EQF-PGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCcEEEEEecCCCHHHHHHHHHHH
Confidence 578999985 579999999976 489998887643 333333220 0 011 12355789999998877541
Q ss_pred --CCCCccEEEEeeC
Q 004087 718 --PLETFDSILILAD 730 (774)
Q Consensus 718 --~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 73 ~~~~~~id~lI~~ag 87 (252)
T PRK07677 73 DEKFGRIDALINNAA 87 (252)
T ss_pred HHHhCCccEEEECCC
Confidence 1246788887765
No 233
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=73.20 E-value=18 Score=39.67 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=53.3
Q ss_pred CeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 383 ~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
.+++|.|.. -.|..++++|.... .+..|++.+++....+...... ...++.++.||.++++.+.++ ++..
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g----~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~-~~~i 75 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY----NPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRA-LRGV 75 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC----CCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHH-HhcC
Confidence 468888875 46888999997632 2356777776654433222211 123588899999999999875 4568
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
|.||-++..
T Consensus 76 D~Vih~Ag~ 84 (324)
T TIGR03589 76 DYVVHAAAL 84 (324)
T ss_pred CEEEECccc
Confidence 999987754
No 234
>PRK08643 acetoin reductase; Validated
Probab=73.16 E-value=15 Score=38.24 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=52.2
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
..++|+|.+. .+..+++.|.+. +..|++++++++..+....+... .+.++.++.+|.++++.++++=
T Consensus 3 k~~lItGas~giG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVED------GFKVAIVDYNEETAQAAADKLSK--DGGKAIAVKADVSDRDQVFAAVRQVV 74 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4788888876 477788888752 46788888877665554433211 1346778899999988766531
Q ss_pred --cccccEEEEecC
Q 004087 458 --VSKARAIIVLAS 469 (774)
Q Consensus 458 --I~~A~aVIiltd 469 (774)
..+.|.+|-++.
T Consensus 75 ~~~~~id~vi~~ag 88 (256)
T PRK08643 75 DTFGDLNVVVNNAG 88 (256)
T ss_pred HHcCCCCEEEECCC
Confidence 124577777664
No 235
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=73.03 E-value=13 Score=38.85 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=51.4
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
++++|.|.+. .+..++++|... +..|++++++++.++...++... ..++.++.+|.++++.++++-
T Consensus 1 m~vlItGas~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK------GARVVISSRNEENLEKALKELKE---YGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEcCCCCHHHHHHHHHHHH
Confidence 3789999876 477788888753 46788888888766655443211 124677889999888776531
Q ss_pred --cccccEEEEecC
Q 004087 458 --VSKARAIIVLAS 469 (774)
Q Consensus 458 --I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 72 ~~~g~id~li~naG 85 (259)
T PRK08340 72 ELLGGIDALVWNAG 85 (259)
T ss_pred HhcCCCCEEEECCC
Confidence 124566665543
No 236
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=72.95 E-value=12 Score=39.93 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=49.7
Q ss_pred EEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----c
Q 004087 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-----V 458 (774)
Q Consensus 385 III~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg-----I 458 (774)
|+|.|. |..|..++++|.+. ++.|.+..++++... ..++..+.||..|++.|.++= +
T Consensus 2 ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~~~~ 64 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSDDGM 64 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcccCc
Confidence 778887 66788999999763 466777777765321 124566789999999998752 3
Q ss_pred cc-ccEEEEecCC
Q 004087 459 SK-ARAIIVLASD 470 (774)
Q Consensus 459 ~~-A~aVIiltdd 470 (774)
.. ++.++.+++.
T Consensus 65 ~g~~d~v~~~~~~ 77 (285)
T TIGR03649 65 EPEISAVYLVAPP 77 (285)
T ss_pred CCceeEEEEeCCC
Confidence 45 8888887754
No 237
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=72.82 E-value=15 Score=38.29 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=52.4
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
...++|.|.+. .+..+++.|.+. +..|++++++.+..+...++. +..+.++.+|.++++.++++--
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE------GARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 35688998755 588888998763 478889998887766554332 2347788899998888765421
Q ss_pred ----ccccEEEEecC
Q 004087 459 ----SKARAIIVLAS 469 (774)
Q Consensus 459 ----~~A~aVIiltd 469 (774)
...+.+|-++.
T Consensus 75 ~~~~~~id~li~~ag 89 (257)
T PRK07067 75 VERFGGIDILFNNAA 89 (257)
T ss_pred HHHcCCCCEEEECCC
Confidence 24566666553
No 238
>PRK07062 short chain dehydrogenase; Provisional
Probab=72.80 E-value=36 Score=35.52 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=54.0
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|++ .+|..+++.|.+ .|..|.++...+ ++.+.+.+. + ....++..+..+.+|.+|++.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~~-~-~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLE---AGASVAICGRDE--ERLASAEAR-L-REKFPGARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHH-H-HhhCCCceEEEEEecCCCHHHHHHHHHH
Confidence 4579999984 579999999976 499998887653 222222210 0 0022334566789999999877541
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 81 ~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 23567888877753
No 239
>PRK06949 short chain dehydrogenase; Provisional
Probab=72.78 E-value=11 Score=38.98 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=53.6
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++|+|.|+ |.+|..+++.|.+ .|..|.++..++ ++.+.+.+. ++ . ....+.++.+|.++++.+++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~---~G~~Vi~~~r~~--~~~~~~~~~-l~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQ---AGAKVVLASRRV--ERLKELRAE-IE--A-EGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-HH--h-cCCcEEEEEecCCCHHHHHHHHHH
Confidence 478999998 7789999999976 488988887643 333333220 00 0 012345689999998877552
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 80 ~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 80 AETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 12467888887763
No 240
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=72.78 E-value=27 Score=36.16 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=51.8
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-----
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 717 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~----- 717 (774)
+++|.|+ |.+|..+++.|.+ .|.+|.+++..+ ++.+.+.+ .+ +..+..+.+|.+|.+.++++
T Consensus 2 ~vlItGasg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~-~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQ---QGHKVIATGRRQ--ERLQELKD------EL-GDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred EEEEECCCchHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHH------Hh-ccceEEEEecCCCHHHHHHHHHHHH
Confidence 6889997 6789999999976 499999998654 33444432 11 11344689999999877542
Q ss_pred -CCCCccEEEEeeC
Q 004087 718 -PLETFDSILILAD 730 (774)
Q Consensus 718 -~I~~aD~vIiLtd 730 (774)
.....|.+|..++
T Consensus 70 ~~~~~id~vi~~ag 83 (248)
T PRK10538 70 AEWRNIDVLVNNAG 83 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 2346798887765
No 241
>PRK12939 short chain dehydrogenase; Provisional
Probab=72.70 E-value=18 Score=37.17 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=55.0
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
..+++|.|.+. .+..++++|.+. ++.|++++++++..+...++... .+.++.++.+|.++++.++++--
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA------GATVAFNDGLAAEARELAAALEA--AGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 46899999754 578888998753 46777778877765554433211 13458889999999988765421
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
...|.+|-++..
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 357888877653
No 242
>PRK12939 short chain dehydrogenase; Provisional
Probab=72.61 E-value=31 Score=35.37 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=53.5
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.++.++...+ +..+.+.+. +. . .+..+..+.+|.+|++.++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~~--~-~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAE---AGATVAFNDGLA--AEARELAAA-LE--A-AGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-HH--h-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 468999997 6889999999976 489998887543 333333220 00 0 012355689999999877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 78 AAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12568988888763
No 243
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.55 E-value=6.3 Score=45.28 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
..++|+|+|+|.+|..+++.|... |.+|++++.+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL---GARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCCc
Confidence 457999999999999999999875 88999998765
No 244
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=72.53 E-value=16 Score=38.01 Aligned_cols=81 Identities=20% Similarity=0.124 Sum_probs=53.8
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
..+++|.|.+. .+..++++|.+. +..|++.+++++..+...+... . .+.++.++.+|.++++.++++--
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~i~-~-~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDPAKLAAAAESLK-G-QGLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH-h-cCceEEEEEccCCCHHHHHHHHHHH
Confidence 46888999754 578888888752 4678888888776655443321 1 13357888999999888776521
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
..-|.+|-.+..
T Consensus 82 ~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 82 EAEIGPIDILVNNAGM 97 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 235677766643
No 245
>PRK00536 speE spermidine synthase; Provisional
Probab=72.45 E-value=33 Score=37.01 Aligned_cols=74 Identities=20% Similarity=0.155 Sum_probs=48.2
Q ss_pred cccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH---hhhcccCCccEEEEEeCCCCHHHHhcc
Q 004087 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA---KLEFDFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 380 ~~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~---~~~~~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
....+|+|+|.|+ +..++|+.+.. ..|+++|-|++.++...+ .....+.+.++..+. .+++.
T Consensus 71 ~~pk~VLIiGGGD--Gg~~REvLkh~------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------~~~~~ 135 (262)
T PRK00536 71 KELKEVLIVDGFD--LELAHQLFKYD------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDL 135 (262)
T ss_pred CCCCeEEEEcCCc--hHHHHHHHCcC------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-------hhhhc
Confidence 3467999999998 44567776532 389999999977664422 112234556676664 14444
Q ss_pred CcccccEEEEec
Q 004087 457 SVSKARAIIVLA 468 (774)
Q Consensus 457 gI~~A~aVIilt 468 (774)
..++-|.||+.+
T Consensus 136 ~~~~fDVIIvDs 147 (262)
T PRK00536 136 DIKKYDLIICLQ 147 (262)
T ss_pred cCCcCCEEEEcC
Confidence 446789999874
No 246
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=72.41 E-value=11 Score=41.29 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=59.8
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEE-EEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC-
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELW-MLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL- 719 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~-II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I- 719 (774)
++|+|.|+ |-+|..+++.|.+ .|.++. +++..+.......+.. ..++..+.++.+|.+|.+.+++.--
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~---~g~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~~ 72 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIIN---ETSDAVVVVDKLTYAGNLMSLAP------VAQSERFAFEKVDICDRAELARVFTE 72 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHH---cCCCEEEEEecCccccchhhhhh------cccCCceEEEECCCcChHHHHHHHhh
Confidence 47999998 6799999999976 376644 4443211111111111 0012234568999999988766311
Q ss_pred CCccEEEEeeCCCCc-----CCcCCCcHHHHHHHHHHHHHhh
Q 004087 720 ETFDSILILADESLE-----DSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 720 ~~aD~vIiLtdd~~~-----~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
...|.||-++..... .....-+.+...++.+++-..+
T Consensus 73 ~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~ 114 (355)
T PRK10217 73 HQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARA 114 (355)
T ss_pred cCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHH
Confidence 247999998864211 1122334455556666665543
No 247
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=72.32 E-value=29 Score=35.32 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=52.5
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+.+ +.+.+.+. + +-.+..+.++.+|.++.+.+.++
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~---~G~~v~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAA---QGANVVINYASSEA-GAEALVAE-I---GALGGKALAVQGDVSDAESVERAVDEA 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCchh-HHHHHHHH-H---HhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 57999998 5789999999976 48999888765432 22222210 0 00123455789999999877542
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|..+..
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 78 KAEFGGVDILVNNAGI 93 (248)
T ss_pred HHHcCCCCEEEECCCc
Confidence 12457888888753
No 248
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=72.32 E-value=6.5 Score=38.58 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=45.4
Q ss_pred eEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc-c-cCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-D-FMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~-~-~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
+|.|||.|..+..++..|... ++.|.|-.++++.++.+.+.... . +.+... ..+..-..+|++ .+++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l---~~~i~~t~dl~~-a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEEQIEEINETRQNPKYLPGIKL---PENIKATTDLEE-ALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHHHHHHHHHHTSETTTSTTSBE---ETTEEEESSHHH-HHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHHHHHHHHHhCCCCCCCCCccc---CcccccccCHHH-HhCcc
Confidence 588999999888888888753 58999999999887766543210 1 111111 001101133433 25688
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
|.||+..+.
T Consensus 71 d~IiiavPs 79 (157)
T PF01210_consen 71 DIIIIAVPS 79 (157)
T ss_dssp SEEEE-S-G
T ss_pred cEEEecccH
Confidence 999999864
No 249
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=72.26 E-value=48 Score=31.39 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=46.9
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHH-------------------HHHHHHhhhcccCCccEEE
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE-------------------MEMDIAKLEFDFMGTSVIC 442 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~-------------------le~~l~~~~~~~~~~~V~~ 442 (774)
+.+|+|+|.|..+..+++.|....- ..+.++|.|.-+ .+.+.+.+.......++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~ 76 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEA 76 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeee
Confidence 4589999999999999999987542 356677665311 1111111111122445666
Q ss_pred EEeCCCCHHHHhccCcccccEEEEecCC
Q 004087 443 RSGSPLILADLKKVSVSKARAIIVLASD 470 (774)
Q Consensus 443 I~Gd~t~~e~L~rAgI~~A~aVIiltdd 470 (774)
+.-+. +++.+.+. ++.+|.||.++++
T Consensus 77 ~~~~~-~~~~~~~~-~~~~d~vi~~~d~ 102 (135)
T PF00899_consen 77 IPEKI-DEENIEEL-LKDYDIVIDCVDS 102 (135)
T ss_dssp EESHC-SHHHHHHH-HHTSSEEEEESSS
T ss_pred eeccc-cccccccc-ccCCCEEEEecCC
Confidence 55555 33333332 2678888888754
No 250
>PRK06482 short chain dehydrogenase; Provisional
Probab=72.16 E-value=15 Score=38.75 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=54.9
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
.++++|.|.+. .+..++++|.+. +..|+++.++++.++...... +.++.++.+|.++.+.++++=
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~------g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLAR------GDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHH
Confidence 35799999765 578889998753 467888888877665543321 235788999999999887641
Q ss_pred ---cccccEEEEecCC
Q 004087 458 ---VSKARAIIVLASD 470 (774)
Q Consensus 458 ---I~~A~aVIiltdd 470 (774)
....+.||-++..
T Consensus 71 ~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 71 FAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356888887754
No 251
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=72.14 E-value=6.2 Score=45.84 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=30.9
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
+..++|+|+|+|..|...+..|.+. |.+|+|++..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~---G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARA---GVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc---CCeEEEEecCC
Confidence 3567999999999999999999864 99999998754
No 252
>PRK06182 short chain dehydrogenase; Validated
Probab=72.14 E-value=19 Score=38.00 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=53.2
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+ .+ +..+.+|.+|++.++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~---~G~~V~~~~r~~--~~l~~~~~--------~~--~~~~~~Dv~~~~~~~~~~~~ 67 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA---QGYTVYGAARRV--DKMEDLAS--------LG--VHPLSLDVTDEASIKAAVDT 67 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHh--------CC--CeEEEeeCCCHHHHHHHHHH
Confidence 357999997 6789999999976 499999888653 44444433 12 34578999999877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++-
T Consensus 68 ~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 68 IIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 12467988888763
No 253
>PRK08017 oxidoreductase; Provisional
Probab=72.09 E-value=13 Score=38.60 Aligned_cols=59 Identities=15% Similarity=-0.000 Sum_probs=42.2
Q ss_pred CeEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004087 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (774)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~r 455 (774)
+.++|.|+ |..|..++++|... +..|+++.++++.++...+ .++.++.+|..+.+.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR------GYRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHH
Confidence 46999998 66788999999752 4578888888766554321 235678888888877654
No 254
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=72.05 E-value=38 Score=37.28 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=34.8
Q ss_pred ccCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHh
Q 004087 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK 430 (774)
Q Consensus 381 ~k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~ 430 (774)
...-.||.|+++ .|...++||.+ +|..|+|+.+++++++....+
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAk------rG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAK------RGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHH------cCCEEEEEeCCHHHHHHHHHH
Confidence 347788999987 47889999986 357799999999988876543
No 255
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.01 E-value=17 Score=37.62 Aligned_cols=80 Identities=16% Similarity=0.048 Sum_probs=55.1
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI--- 458 (774)
.+++|.|.+. .+..++++|.+. +..|++++++++..+....+... .+.++.++.+|.++++.++++--
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE------GAKVVIADLNDEAAAAAAEALQK--AGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 5899999754 588899999753 46788888887766554433211 23457889999999998866421
Q ss_pred ---ccccEEEEecCC
Q 004087 459 ---SKARAIIVLASD 470 (774)
Q Consensus 459 ---~~A~aVIiltdd 470 (774)
...|.+|-++..
T Consensus 77 ~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 77 ETFGGVDILVNNAGI 91 (258)
T ss_pred HHcCCCCEEEECCCC
Confidence 246788877653
No 256
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=72.01 E-value=15 Score=39.82 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=52.1
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
...++|.|.+. .|..++++|... ++.|+++..+++..+.........-...++.++.||.++++.++++ ++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~ 77 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR------GYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDG 77 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC------CCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcC
Confidence 35789999754 588889999763 4566666555433222111000000113578899999999988775 456
Q ss_pred ccEEEEecCC
Q 004087 461 ARAIIVLASD 470 (774)
Q Consensus 461 A~aVIiltdd 470 (774)
.|.||-++..
T Consensus 78 ~d~vih~A~~ 87 (325)
T PLN02989 78 CETVFHTASP 87 (325)
T ss_pred CCEEEEeCCC
Confidence 8999988864
No 257
>PRK10750 potassium transporter; Provisional
Probab=71.97 E-value=74 Score=37.35 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHhhccCCCC--C----C-CCccCceeeehhhHhH-HHHHHHHHH
Q 004087 289 LALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHA--D----R-VGTGPRIVSVSISSGG-MLIFAMMLG 359 (774)
Q Consensus 289 l~Ll~~~l~lil~g~~~~~~ie~~s~~dAly~~~~TltTvGygd--~----~-~t~~gRi~~v~lil~G-l~ifa~lig 359 (774)
+..+++.+++++++++++ ..++.++.+|+--+..+++++|-+- . + -+..++++.++.|+.| +-++++++.
T Consensus 398 ~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl~~ 475 (483)
T PRK10750 398 WGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVL 475 (483)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555 6678899999999999999888643 2 2 3467899888877777 556655544
No 258
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.96 E-value=17 Score=37.73 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=52.1
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA--gI 458 (774)
...++|.|.+. .+..++++|.+. +..|++++++++..+...+... . .+.++.++.+|.++.+.++++ .+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE------GAKVVVADRDAAGGEETVALIR-E-AGGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH-h-cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35789998765 588889999753 4678888888776655443321 1 134578888999998877663 11
Q ss_pred ----ccccEEEEecC
Q 004087 459 ----SKARAIIVLAS 469 (774)
Q Consensus 459 ----~~A~aVIiltd 469 (774)
..-|.+|-.+.
T Consensus 79 ~~~~g~id~li~~ag 93 (253)
T PRK06172 79 IAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 12366665553
No 259
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.90 E-value=24 Score=36.37 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=51.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++... ..++.+.+.+. + +-.+..+.++.+|.+|++.++++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~---~g~~v~~~~~r-~~~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAE---EGYDIAVNYAR-SRKAAEETAEE-I---EALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCC-CHHHHHHHHHH-H---HhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 57999998 5789999999976 48888765322 12222222210 0 00123456789999999977542
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12457888888764
No 260
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=71.75 E-value=17 Score=37.86 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=51.8
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI--- 458 (774)
+.++|.|.+. .+..+++.|.+. +..|++++++++..+...++.........+.++.+|.++++.++++--
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~------g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~ 76 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEE------GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVD 76 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHH
Confidence 4588888875 477788888752 467888888776555443322111111357888899999888775421
Q ss_pred ---ccccEEEEecC
Q 004087 459 ---SKARAIIVLAS 469 (774)
Q Consensus 459 ---~~A~aVIiltd 469 (774)
..-|.+|-++.
T Consensus 77 ~~~~~id~vv~~ag 90 (259)
T PRK12384 77 EIFGRVDLLVYNAG 90 (259)
T ss_pred HHcCCCCEEEECCC
Confidence 23467776664
No 261
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=71.63 E-value=18 Score=37.17 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=54.4
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--I 458 (774)
...++|.|.+. .+..++++|.+. +..|+++.++++..+........ .+.++.++.+|..+++.++++- +
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD------GAEVIVVDICGDDAAATAELVEA--AGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789999754 578899998763 46778888876555444332211 1335888999999999887752 1
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
...+.||-++..
T Consensus 78 ~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 78 VEDFGRLDILVANAGI 93 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 257888877754
No 262
>PRK08265 short chain dehydrogenase; Provisional
Probab=71.55 E-value=9.8 Score=39.95 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=53.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.+++.++ +..+.+.+ .+ +..+.++.+|.+|++.++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~-~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVA---AGARVAIVDIDA--DNGAAVAA------SL-GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------Hh-CCeeEEEEecCCCHHHHHHHHHH
Confidence 368999998 6789999999976 499999988653 33344433 11 12355689999999877542
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 74 ~~~~~g~id~lv~~ag 89 (261)
T PRK08265 74 VVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1245788887765
No 263
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.47 E-value=16 Score=37.44 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=52.2
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc----
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~---- 716 (774)
.++++|.|+ |.+|..+++.|.+ .|..|.+++.++ ++.+.+.+. + .. .+..+..+++|.++.+.+++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~---~G~~vi~~~r~~--~~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQ---KGAKLALIDLNQ--EKLEEAVAE-C--GA-LGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 458999998 8899999999976 488988887643 333322210 0 00 12234568999998776542
Q ss_pred --CCCCCccEEEEeeC
Q 004087 717 --LPLETFDSILILAD 730 (774)
Q Consensus 717 --~~I~~aD~vIiLtd 730 (774)
......|.+|-.++
T Consensus 76 ~~~~~~~id~vi~~ag 91 (253)
T PRK08217 76 IAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHcCCCCEEEECCC
Confidence 12346798888876
No 264
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=71.39 E-value=15 Score=40.16 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=53.5
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCCh---hHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~---~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
.++|||.|+ |-+|..+++.|.+ .|.+|.++...+. .++.+.+.+. . ...+..+.++.||.+|.+.++++
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~Dl~d~~~~~~~ 78 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLS---KGYEVHGIIRRSSNFNTQRLDHIYID---P-HPNKARMKLHYGDLSDASSLRRW 78 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---CCCEEEEEecccccccccchhhhccc---c-ccccCceEEEEecCCCHHHHHHH
Confidence 357999998 7899999999976 4999998875321 1222222210 0 00122356789999998877652
Q ss_pred C-CCCccEEEEeeCC
Q 004087 718 P-LETFDSILILADE 731 (774)
Q Consensus 718 ~-I~~aD~vIiLtdd 731 (774)
= -...|.+|-++..
T Consensus 79 ~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 79 LDDIKPDEVYNLAAQ 93 (340)
T ss_pred HHHcCCCEEEECCcc
Confidence 1 1246888888764
No 265
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=71.33 E-value=25 Score=36.63 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=52.9
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+. .+|..+++.|.+ .|.+|.+++....++..+.+.+ + +..+..+++|.+|++.+++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~-------~-~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAE---AGCDIVGINIVEPTETIEQVTA-------L-GRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEecCcchHHHHHHHHh-------c-CCeEEEEECCCCCHHHHHHHHHH
Confidence 3689999985 689999999986 4999988875443333344433 1 22355789999998766532
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 79 ~~~~~~~~D~li~~Ag 94 (253)
T PRK08993 79 AVAEFGHIDILVNNAG 94 (253)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1246788887765
No 266
>PRK07825 short chain dehydrogenase; Provisional
Probab=71.33 E-value=24 Score=37.18 Aligned_cols=75 Identities=15% Similarity=0.011 Sum_probs=51.6
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc-----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 716 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~----- 716 (774)
+.++|.|+ |.+|..+++.|.+ .|..|.+...+ +++.+.+.+ .+.+ +.++.+|.+|++.+++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~~--~~~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA---LGARVAIGDLD--EALAKETAA------ELGL--VVGGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHH------Hhcc--ceEEEccCCCHHHHHHHHHHH
Confidence 57999998 6689999999976 48998888754 344444443 2222 3468999999887643
Q ss_pred -CCCCCccEEEEeeC
Q 004087 717 -LPLETFDSILILAD 730 (774)
Q Consensus 717 -~~I~~aD~vIiLtd 730 (774)
......|.+|..++
T Consensus 73 ~~~~~~id~li~~ag 87 (273)
T PRK07825 73 EADLGPIDVLVNNAG 87 (273)
T ss_pred HHHcCCCCEEEECCC
Confidence 11245688887765
No 267
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=71.31 E-value=6.7 Score=34.61 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=32.6
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCC---CeEEEE-ecCChhHHHHHhhc
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPG---SELWML-NEVPEKEREKKLTD 688 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~G---s~v~II-~~~p~~er~~~l~~ 688 (774)
+|-|+|.|+.|..|++.|.+. | .++.++ +. ..|+.+++.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~---g~~~~~v~~~~~r--~~~~~~~~~~ 44 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS---GIKPHEVIIVSSR--SPEKAAELAK 44 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TS-GGEEEEEEES--SHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCceeEEeeccC--cHHHHHHHHH
Confidence 588999999999999999764 6 899977 54 4577777765
No 268
>PRK05872 short chain dehydrogenase; Provisional
Probab=71.25 E-value=28 Score=37.44 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=53.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCC-CceEEEEecCcccHhhhhcC--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~-~i~V~~i~GD~td~~~L~~~-- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++..+ +++.+.+.+ .+. +..+..+.+|.+|++.++++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~l~~~~~------~l~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHA---RGAKLALVDLE--EAELAALAA------ELGGDDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------HhcCCCcEEEEEecCCCHHHHHHHHH
Confidence 468999998 5689999999976 49999888864 344444433 111 23444567999999877542
Q ss_pred ----CCCCccEEEEeeCC
Q 004087 718 ----PLETFDSILILADE 731 (774)
Q Consensus 718 ----~I~~aD~vIiLtdd 731 (774)
.....|.+|..++-
T Consensus 78 ~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 78 EAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 23567988887763
No 269
>PRK12828 short chain dehydrogenase; Provisional
Probab=71.21 E-value=7.8 Score=39.41 Aligned_cols=76 Identities=11% Similarity=0.018 Sum_probs=50.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh--HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~--er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|..|.++..++.+ +..+.+.. ..+.++.+|.+|.+.++++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~---~G~~v~~~~r~~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~ 73 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAA---RGARVALIGRGAAPLSQTLPGVPA----------DALRIGGIDLVDPQAARRAV 73 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHH---CCCeEEEEeCChHhHHHHHHHHhh----------cCceEEEeecCCHHHHHHHH
Confidence 357999997 7889999999975 48999999875422 11222221 1234578999998877542
Q ss_pred -----CCCCccEEEEeeC
Q 004087 718 -----PLETFDSILILAD 730 (774)
Q Consensus 718 -----~I~~aD~vIiLtd 730 (774)
.....|.++-.+.
T Consensus 74 ~~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 74 DEVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHHhCCcCEEEECCc
Confidence 1246788887765
No 270
>PRK06180 short chain dehydrogenase; Provisional
Probab=71.20 E-value=20 Score=37.96 Aligned_cols=78 Identities=9% Similarity=-0.039 Sum_probs=53.7
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+. . .-.+..+.+|.+|++.+.++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~---~G~~V~~~~r~~--~~~~~l~~~------~-~~~~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALA---AGHRVVGTVRSE--AARADFEAL------H-PDRALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHh---CcCEEEEEeCCH--HHHHHHHhh------c-CCCeeEEEccCCCHHHHHHHHHH
Confidence 357999998 6789999999976 499999998754 444444431 1 11234679999999877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 72 ~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 72 AEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 12357888887764
No 271
>PRK06197 short chain dehydrogenase; Provisional
Probab=71.20 E-value=15 Score=39.57 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=54.4
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...++|.|.+. .|..++++|... +..|+++.++++..+...++......+.++.++.+|.++.+.++++-
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 45788888765 588888998763 46777888777665544333211112346788999999999877642
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
..+-|.+|-.+.
T Consensus 90 ~~~~~~iD~li~nAg 104 (306)
T PRK06197 90 RAAYPRIDLLINNAG 104 (306)
T ss_pred HhhCCCCCEEEECCc
Confidence 235688887775
No 272
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=71.11 E-value=9.1 Score=41.14 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=34.1
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG 690 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g 690 (774)
+|.|+|.|..|..++..|.+. |.+|++++.+ .++++.+.+.|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~---g~~V~~~~r~--~~~~~~~~~~g 43 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA---GHDVTLVARR--GAHLDALNENG 43 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC---CCeEEEEECC--hHHHHHHHHcC
Confidence 699999999999999999863 8999999864 36666666544
No 273
>PRK06500 short chain dehydrogenase; Provisional
Probab=71.08 E-value=19 Score=37.09 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=51.3
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA---- 456 (774)
..+++|.|.+. .+..++++|... +..|++++++++..+...++. +.++.++++|.++.+.+.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAE------GARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 35899999865 577788888753 467888888876655544332 33567788898888775542
Q ss_pred --CcccccEEEEecC
Q 004087 457 --SVSKARAIIVLAS 469 (774)
Q Consensus 457 --gI~~A~aVIiltd 469 (774)
.....|.+|-++.
T Consensus 75 ~~~~~~id~vi~~ag 89 (249)
T PRK06500 75 AEAFGRLDAVFINAG 89 (249)
T ss_pred HHHhCCCCEEEECCC
Confidence 1124577776664
No 274
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.04 E-value=12 Score=41.54 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=57.6
Q ss_pred CceEEEEcc-cccHHHHHHHHHHh-c---CCCCeEEEEecCChhHHHHH----hhcCCCCcCCCCCceEEEEecCcccHh
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAF-L---APGSELWMLNEVPEKEREKK----LTDGGLDISGLMNIKLVHREGNAVIRR 712 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~-l---~~Gs~v~II~~~p~~er~~~----l~~~g~~~~~l~~i~V~~i~GD~td~~ 712 (774)
+.+|.|+|. |.+|..++-.|... + ..-.++.+++...++++++- |.+.- ...+.++. +.+ .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~--~~~~~~~~---i~~--~~-- 72 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCA--FPLLAEIV---ITD--DP-- 72 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhcc--ccccCceE---Eec--Cc--
Confidence 569999999 99999999887631 0 01128999987543322221 11110 00112222 222 12
Q ss_pred hhhcCCCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhhh
Q 004087 713 HLESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRYK 758 (774)
Q Consensus 713 ~L~~~~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~~ 758 (774)
.+.+.++|.+|++++.... +.+.++.-.-...-+++++.++.
T Consensus 73 ---~~~~~daDivvitaG~~~k-~g~tR~dll~~N~~i~~~i~~~i 114 (322)
T cd01338 73 ---NVAFKDADWALLVGAKPRG-PGMERADLLKANGKIFTAQGKAL 114 (322)
T ss_pred ---HHHhCCCCEEEEeCCCCCC-CCCcHHHHHHHHHHHHHHHHHHH
Confidence 2347788989988775321 23444554555666677776653
No 275
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.03 E-value=18 Score=37.05 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=52.8
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|++ .+|..+++.|.+ .|.+|.++..++ ++.+.+.+. + .. .+..+.++.+|.++++.++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~---~G~~Vi~~~r~~--~~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAK---EGVNVGLLARTE--ENLKAVAEE-V--EA-YGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--HH-hCCeEEEEECCCCCHHHHHHHHHH
Confidence 3679999974 689999999976 489999988654 222222210 0 01 122455789999999877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|..+..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 78 LKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHcCCccEEEEcCcc
Confidence 23467888887753
No 276
>PRK06101 short chain dehydrogenase; Provisional
Probab=70.90 E-value=8.6 Score=39.79 Aligned_cols=75 Identities=9% Similarity=-0.013 Sum_probs=50.7
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--CC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 719 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~I 719 (774)
+.++|.|+ |.+|..+++.|.+ .|.+|.++..+ +++.+.+.+. ..+ +..+.+|.+|++.++++ .+
T Consensus 2 ~~vlItGas~giG~~la~~L~~---~G~~V~~~~r~--~~~~~~~~~~------~~~--~~~~~~D~~~~~~~~~~~~~~ 68 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK---QGWQVIACGRN--QSVLDELHTQ------SAN--IFTLAFDVTDHPGTKAALSQL 68 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHHHh------cCC--CeEEEeeCCCHHHHHHHHHhc
Confidence 46899997 6789999999976 49999998864 3555555541 123 34579999999877652 11
Q ss_pred -CCccEEEEeeC
Q 004087 720 -ETFDSILILAD 730 (774)
Q Consensus 720 -~~aD~vIiLtd 730 (774)
..-|.+|..++
T Consensus 69 ~~~~d~~i~~ag 80 (240)
T PRK06101 69 PFIPELWIFNAG 80 (240)
T ss_pred ccCCCEEEEcCc
Confidence 12466666554
No 277
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=70.88 E-value=8.7 Score=41.96 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.2
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
.++++|+|.|..|..++..|.+. |.+|++++..+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~---Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL---GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCEEEEEECCH
Confidence 46899999999999999999874 88999998764
No 278
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=70.87 E-value=8.7 Score=40.86 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=49.7
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-----
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 717 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~----- 717 (774)
+|+|.|+ |.+|..+++.|.+ .|.+|+++..++.. .. ..++. ++.||.+|.+.|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~---~g~~V~~~~R~~~~--~~-----------~~~~~--~~~~d~~d~~~l~~a~~~~~ 62 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA---ASVPFLVASRSSSS--SA-----------GPNEK--HVKFDWLDEDTWDNPFSSDD 62 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh---CCCcEEEEeCCCcc--cc-----------CCCCc--cccccCCCHHHHHHHHhccc
Confidence 4889998 9999999999975 48999999876532 11 12333 468999999998763
Q ss_pred CCCC-ccEEEEeeC
Q 004087 718 PLET-FDSILILAD 730 (774)
Q Consensus 718 ~I~~-aD~vIiLtd 730 (774)
.+.. +|.++.++.
T Consensus 63 ~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 63 GMEPEISAVYLVAP 76 (285)
T ss_pred CcCCceeEEEEeCC
Confidence 2344 788876654
No 279
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=70.85 E-value=4.7 Score=47.37 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHhhccCCCCC-CCCccCceeeehhhHhHHHHHHHHHHHHHHHH
Q 004087 312 SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAI 365 (774)
Q Consensus 312 ~s~~dAly~~~~TltTvGygd~-~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i 365 (774)
.++..|.||+|-.+...|-|+- |-+.-.|+++++|.=+.|++++.-.+-+++++
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 7899999999999999999987 67888999999887777777776666665554
No 280
>PRK09242 tropinone reductase; Provisional
Probab=70.75 E-value=18 Score=37.55 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=52.7
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
+.++|.|.+. .+..++++|... +..|+++.++++..+...+++.....+.++.++.+|.++++.++++-
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGL------GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4678888754 578888888752 46788888887776655443321112346788899999987765421
Q ss_pred --cccccEEEEecC
Q 004087 458 --VSKARAIIVLAS 469 (774)
Q Consensus 458 --I~~A~aVIiltd 469 (774)
...-|.+|.++.
T Consensus 84 ~~~g~id~li~~ag 97 (257)
T PRK09242 84 DHWDGLHILVNNAG 97 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 124567776664
No 281
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=70.63 E-value=28 Score=35.85 Aligned_cols=80 Identities=9% Similarity=0.012 Sum_probs=51.8
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc-----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 716 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~----- 716 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. ++ . ....+..+.+|.+|++.+++
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~---~g~~v~~~~r~~--~~~~~~~~~-~~--~-~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAA---AGANVVVNDLGE--AGAEAAAKV-AT--D-AGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-HH--h-cCCceEEEECCCCCHHHHHHHHHHH
Confidence 46999997 6789999999975 488999998653 333333320 00 0 11235568999999984422
Q ss_pred -CCCCCccEEEEeeCC
Q 004087 717 -LPLETFDSILILADE 731 (774)
Q Consensus 717 -~~I~~aD~vIiLtdd 731 (774)
......|.+|-.+..
T Consensus 73 ~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 73 AAEFGGLDILVNNAGI 88 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 124567888877653
No 282
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=70.63 E-value=18 Score=37.91 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=54.7
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
..+++|.|.+. .+..++++|.+. +..|++.+++++..+...+... -.+.++.++.+|.++++.++++--
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~------G~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA------GATIVFNDINQELVDKGLAAYR--ELGIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35788888876 477789998753 4677888888776665544321 113458889999999988766421
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
..-|.+|-.+.-
T Consensus 82 ~~~~~~id~li~~ag~ 97 (265)
T PRK07097 82 EKEVGVIDILVNNAGI 97 (265)
T ss_pred HHhCCCCCEEEECCCC
Confidence 245777776653
No 283
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=70.58 E-value=16 Score=37.24 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=52.5
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--C-
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 718 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~- 718 (774)
++|+|.|+ |.+|..+++.|.+ .|.+|.++..++. +.+.+.+ .+ .-.+..+..+.+|.+|++.+.+. +
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~---~g~~v~~~~r~~~--~~~~~~~-~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAA---DGAKVVIYDSNEE--AAEALAA-EL---RAAGGEARVLVFDVSDEAAVRALIEAA 76 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCChh--HHHHHHH-HH---HhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 57999998 6789999999976 4899999987543 3222221 00 00122345678999998876442 1
Q ss_pred ---CCCccEEEEeeCC
Q 004087 719 ---LETFDSILILADE 731 (774)
Q Consensus 719 ---I~~aD~vIiLtdd 731 (774)
....|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 77 VEAFGALDILVNNAGI 92 (246)
T ss_pred HHHhCCCCEEEECCCc
Confidence 2456988888754
No 284
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=70.57 E-value=19 Score=37.41 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=52.5
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
.+.++|.|.+. .+..++++|.+. +..|++++++++..+...++... .+.++.++.+|.++++.+.++=
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGA------GAHVLVNGRNAATLEAAVAALRA--AGGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 45788888765 477788888752 46788888887666554433211 1345788999999998876541
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
....+.+|-.+.
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 123466666554
No 285
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=70.45 E-value=14 Score=39.88 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=50.8
Q ss_pred CeEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
..|+|.|. |-.|..++++|... ++.|+++.++++............-...++.++.||..+++.+.++ ++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 77 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGC 77 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCC
Confidence 47999996 45688899999763 4566665554432111100000000123678999999999888765 4568
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
|.||-++..
T Consensus 78 d~Vih~A~~ 86 (322)
T PLN02662 78 EGVFHTASP 86 (322)
T ss_pred CEEEEeCCc
Confidence 999988864
No 286
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=70.45 E-value=28 Score=39.53 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhhhccCCCHHHHHHHHHHHhhccCCCCCCC
Q 004087 296 IFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADRV 335 (774)
Q Consensus 296 l~lil~g~~~~~~ie~~s~~dAly~~~~TltTvGygd~~~ 335 (774)
+++.+++++.|+..+..+++||++.++.+++|.|+.-.+.
T Consensus 111 ~~lt~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~~~~ 150 (390)
T TIGR00933 111 LLGTILLAVRFVLTGWMPLFDAIFHSISAFNNGGFSTHSD 150 (390)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCCCCC
Confidence 3344444444443322899999999999999999965543
No 287
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.45 E-value=11 Score=39.31 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=52.5
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|++ .+|..+++.|.+ .|.+|.++.....++..+.+.+. +..+.++++|.+|++..+++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~---~G~~vv~~~~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAK---AGADIVGVGVAEAPETQAQVEAL--------GRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHHc--------CCeEEEEEeCCCCHHHHHHHHHH
Confidence 4679999984 679999999986 49999888754322223333321 22355789999999877542
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 77 ~~~~~g~iD~lv~~ag 92 (251)
T PRK12481 77 AVEVMGHIDILINNAG 92 (251)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1346788887665
No 288
>PRK05866 short chain dehydrogenase; Provisional
Probab=70.42 E-value=17 Score=39.13 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=54.6
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...++|.|.+. .|..++++|... +..|++++++++.++...++... .+.++.++.+|.++++.++++-
T Consensus 40 ~k~vlItGasggIG~~la~~La~~------G~~Vi~~~R~~~~l~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARR------GATVVAVARREDLLDAVADRITR--AGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35788889855 578888888752 47888899888776655443211 1235778899999988766541
Q ss_pred ---cccccEEEEecCC
Q 004087 458 ---VSKARAIIVLASD 470 (774)
Q Consensus 458 ---I~~A~aVIiltdd 470 (774)
....|.+|-++..
T Consensus 112 ~~~~g~id~li~~AG~ 127 (293)
T PRK05866 112 EKRIGGVDILINNAGR 127 (293)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356777777653
No 289
>PRK06182 short chain dehydrogenase; Validated
Probab=70.38 E-value=15 Score=38.82 Aligned_cols=75 Identities=23% Similarity=0.080 Sum_probs=53.4
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
...++|.|.+. .|..++++|.. .++.|+++.++++.++.... .++.++.+|.++++.++++--
T Consensus 3 ~k~vlItGasggiG~~la~~l~~------~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA------QGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHH
Confidence 35789999754 57888888875 25788888888776654321 247789999999998876521
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
...|.+|-++.-
T Consensus 69 ~~~~~~id~li~~ag~ 84 (273)
T PRK06182 69 IAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHhcCCCCEEEECCCc
Confidence 256888877753
No 290
>PRK06179 short chain dehydrogenase; Provisional
Probab=70.38 E-value=29 Score=36.40 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=50.7
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
+.++|.|+ |.+|..++++|.+ .|.+|+++..++.+ .+ ...+ +.++++|.+|++.++++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~---~g~~V~~~~r~~~~--~~----------~~~~--~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR---AGYRVFGTSRNPAR--AA----------PIPG--VELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCChhh--cc----------ccCC--CeeEEeecCCHHHHHHHHHHH
Confidence 47999997 5689999999976 49999998865321 11 1123 34689999999877652
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|..++-
T Consensus 68 ~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 68 IARAGRIDVLVNNAGV 83 (270)
T ss_pred HHhCCCCCEEEECCCC
Confidence 13457988888764
No 291
>PRK05875 short chain dehydrogenase; Provisional
Probab=70.24 E-value=21 Score=37.62 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=53.8
Q ss_pred cCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
.+.++|.|.+ ..+..+++.|.+. +..|+++.++++..+...++........++.++.+|.++++.++++--
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAA------GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4688999975 4678888888752 467888888776655443322100012357788899999888766411
Q ss_pred ----ccccEEEEecC
Q 004087 459 ----SKARAIIVLAS 469 (774)
Q Consensus 459 ----~~A~aVIiltd 469 (774)
...|.+|-++.
T Consensus 81 ~~~~~~~d~li~~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHcCCCCEEEECCC
Confidence 25688887765
No 292
>PRK07063 short chain dehydrogenase; Provisional
Probab=70.23 E-value=25 Score=36.61 Aligned_cols=83 Identities=6% Similarity=0.047 Sum_probs=53.7
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++..++ ++.+.+.+. +.. ...+..+..+.+|.+|++.++++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~---~G~~vv~~~r~~--~~~~~~~~~-~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAR---EGAAVALADLDA--ALAERAAAA-IAR-DVAGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-HHh-ccCCceEEEEEccCCCHHHHHHHHHH
Confidence 457999998 4679999999976 499999987643 333333220 000 00123455789999999877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 80 ~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHhCCCcEEEECCCc
Confidence 13467888887763
No 293
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=70.16 E-value=11 Score=41.37 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=47.5
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEec--CcccHhhhhcCCCCC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREG--NAVIRRHLESLPLET 721 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~G--D~td~~~L~~~~I~~ 721 (774)
+|.|+|.|-+|.+++-.|.+. |..|+++... ++.+.+.+.|+ .+....| +......-..+....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~---g~~V~~~~R~---~~~~~l~~~GL--------~i~~~~~~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA---GHDVTLLVRS---RRLEALKKKGL--------RIEDEGGNFTTPVVAATDAEALGP 67 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC---CCeEEEEecH---HHHHHHHhCCe--------EEecCCCccccccccccChhhcCC
Confidence 799999999999999999874 7788888753 33556665443 3322222 112222233455568
Q ss_pred ccEEEEeeC
Q 004087 722 FDSILILAD 730 (774)
Q Consensus 722 aD~vIiLtd 730 (774)
+|.+|+.+-
T Consensus 68 ~Dlviv~vK 76 (307)
T COG1893 68 ADLVIVTVK 76 (307)
T ss_pred CCEEEEEec
Confidence 998888864
No 294
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=70.16 E-value=58 Score=33.36 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.3
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCC
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d 420 (774)
.+-+|+|+|.|..+..+++.|.... -..++++|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-----v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-----VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-----CCeEEEecCC
Confidence 4679999999999999999998753 2467778877
No 295
>PRK06924 short chain dehydrogenase; Provisional
Probab=70.13 E-value=15 Score=37.94 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=42.3
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~-e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
++++|.|.+. .+..++++|.+. +..|+++.+++ +.++...+. .+.++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEK------GTHVISISRTENKELTKLAEQ-----YNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhc------CCEEEEEeCCchHHHHHHHhc-----cCCceEEEEecCCCHHHHHHH
Confidence 4789999755 588899999763 35677777665 344433221 134577888999998887654
No 296
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=70.12 E-value=6.2 Score=45.52 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=29.9
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
..++|+|+|+|..|...+..|.+. |.+|+|++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~---G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA---GHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC---CCcEEEEecC
Confidence 457999999999999999999864 9999999964
No 297
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=70.11 E-value=11 Score=36.14 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=41.0
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
..-+|-|+|.|++|..|++.|.+. |..|.-+... ..+..+++++ .+....+ .+ +.+ -+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~sr-s~~sa~~a~~------~~~~~~~-------~~---~~~-~~~ 67 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA---GHEVVGVYSR-SPASAERAAA------FIGAGAI-------LD---LEE-ILR 67 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT---TSEEEEESSC-HH-HHHHHHC--------TT---------------TTG-GGC
T ss_pred CccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeC-Cccccccccc------ccccccc-------cc---ccc-ccc
Confidence 345899999999999999999874 8888887653 3444555544 2222211 11 222 256
Q ss_pred CccEEEEeeCCC
Q 004087 721 TFDSILILADES 732 (774)
Q Consensus 721 ~aD~vIiLtdd~ 732 (774)
++|.+++.+-|+
T Consensus 68 ~aDlv~iavpDd 79 (127)
T PF10727_consen 68 DADLVFIAVPDD 79 (127)
T ss_dssp C-SEEEE-S-CC
T ss_pred cCCEEEEEechH
Confidence 788888877553
No 298
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=70.07 E-value=30 Score=41.01 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=66.0
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-cc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-VS 459 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg-I~ 459 (774)
...|+|.|+|. .|.++++|+...+ ...+++.+.|+-.......++...+....+.++.||..|.+-++++= -.
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~-----p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFN-----PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcC-----CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC
Confidence 44667777665 5888999998764 36778888887665554444333334567889999999999999872 22
Q ss_pred cccEEEEecCC-C------CCCcchHHHHHHHHH
Q 004087 460 KARAIIVLASD-E------NADQSDARALRVVLS 486 (774)
Q Consensus 460 ~A~aVIiltdd-~------~~~~sDa~NI~~~La 486 (774)
+-|.|+=.+.- + ++.++=..|+.-+..
T Consensus 325 kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~n 358 (588)
T COG1086 325 KVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTEN 358 (588)
T ss_pred CCceEEEhhhhccCcchhcCHHHHHHHhhHhHHH
Confidence 36777765543 1 444445556665443
No 299
>PRK06841 short chain dehydrogenase; Provisional
Probab=69.92 E-value=23 Score=36.60 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=52.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|..|.++..++. ..+...+ +.+..+..+.+|.++++.+++.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~---~G~~Vi~~~r~~~--~~~~~~~-------~~~~~~~~~~~Dl~~~~~~~~~~~~ 82 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAA---KGARVALLDRSED--VAEVAAQ-------LLGGNAKGLVCDVSDSQSVEAAVAA 82 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCHH--HHHHHHH-------hhCCceEEEEecCCCHHHHHHHHHH
Confidence 468999997 7789999999976 4899988886532 2222222 1122344689999999876542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 83 ~~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 83 VISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 12467988888764
No 300
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=69.91 E-value=12 Score=40.61 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=51.2
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCC--hhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-CC
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 719 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p--~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-~I 719 (774)
+|+|.|+ |-+|..+++.|.+ .|.+|++++... ...+...+.+ +.+..+.++.||.+|.+.+.++ .-
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQ---NGHDVVILDNLCNSKRSVLPVIER-------LGGKHPTFVEGDIRNEALLTEILHD 71 (338)
T ss_pred eEEEECCCChHHHHHHHHHHH---CCCeEEEEecCCCchHhHHHHHHH-------hcCCCceEEEccCCCHHHHHHHHhc
Confidence 6899996 8899999999975 489999986421 1111122221 1122234679999999887653 22
Q ss_pred CCccEEEEeeCC
Q 004087 720 ETFDSILILADE 731 (774)
Q Consensus 720 ~~aD~vIiLtdd 731 (774)
..+|.+|-++..
T Consensus 72 ~~~d~vvh~a~~ 83 (338)
T PRK10675 72 HAIDTVIHFAGL 83 (338)
T ss_pred CCCCEEEECCcc
Confidence 368999888753
No 301
>PLN00203 glutamyl-tRNA reductase
Probab=69.88 E-value=6.5 Score=46.40 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=34.4
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChhHHHHHhhc
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~er~~~l~~ 688 (774)
.++|+|+|.|..|..+++.|.. .|. +|++++.. .+|.+.+++
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~---~G~~~V~V~nRs--~era~~La~ 308 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVS---KGCTKMVVVNRS--EERVAALRE 308 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHh---CCCCeEEEEeCC--HHHHHHHHH
Confidence 4689999999999999999975 374 69999864 478888775
No 302
>PLN02214 cinnamoyl-CoA reductase
Probab=69.87 E-value=41 Score=37.07 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=52.5
Q ss_pred cCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHH-HHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004087 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEM-DIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (774)
Q Consensus 382 k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~-~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~ 459 (774)
.++++|.|.+ -.+..++++|... ++.|+.+.++.+.... .+.... . ...++.++.||.++.+.+.++ ++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELE-G-GKERLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhh-C-CCCcEEEEecCcCChHHHHHH-Hh
Confidence 4579999984 4578899999763 4667666665432111 111110 0 113578899999999998775 45
Q ss_pred cccEEEEecCC
Q 004087 460 KARAIIVLASD 470 (774)
Q Consensus 460 ~A~aVIiltdd 470 (774)
.+|.||-++..
T Consensus 81 ~~d~Vih~A~~ 91 (342)
T PLN02214 81 GCDGVFHTASP 91 (342)
T ss_pred cCCEEEEecCC
Confidence 68999998865
No 303
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=69.84 E-value=9.9 Score=40.85 Aligned_cols=72 Identities=24% Similarity=0.208 Sum_probs=51.1
Q ss_pred eEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004087 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (774)
Q Consensus 384 HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~ 462 (774)
.++|.|. |-.|..+++.|... +..|++++++++..+.. ...++.++.||..+.+.++++ ++.++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~-~~~~d 66 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQ------GEEVRVLVRPTSDRRNL--------EGLDVEIVEGDLRDPASLRKA-VAGCR 66 (328)
T ss_pred eEEEECCccchhHHHHHHHHHC------CCEEEEEEecCcccccc--------ccCCceEEEeeCCCHHHHHHH-HhCCC
Confidence 5889987 55688899999763 36777887765432211 123578899999999988875 45678
Q ss_pred EEEEecCC
Q 004087 463 AIIVLASD 470 (774)
Q Consensus 463 aVIiltdd 470 (774)
.||-++..
T Consensus 67 ~vi~~a~~ 74 (328)
T TIGR03466 67 ALFHVAAD 74 (328)
T ss_pred EEEEecee
Confidence 88877643
No 304
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=69.78 E-value=6.7 Score=44.09 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=29.1
Q ss_pred ceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
..|+|+|+|..|..++-.|.+. |.+|+|+|..
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~---G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARA---GLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhC---CCcEEEEccC
Confidence 4799999999999999999874 9999999975
No 305
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=69.78 E-value=15 Score=39.83 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=62.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCCh-hHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~-~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
.++|+|.|+ |-+|..+++.|.+ .|.+|+++..++. .++...+.... ...++ +.+++||.+|.+.++++ +
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~--~~~~~~Dl~~~~~~~~~-~ 75 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLL---RGYTVKATVRDLTDRKKTEHLLALD---GAKER--LKLFKADLLEESSFEQA-I 75 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEECCCcchHHHHHHHhcc---CCCCc--eEEEecCCCCcchHHHH-H
Confidence 358999997 7899999999976 4889887655432 12223222100 00123 44689999999888764 3
Q ss_pred CCccEEEEeeCCCCc--CCc--CCCcHHHHHHHHHHHHHh
Q 004087 720 ETFDSILILADESLE--DSI--VHSDSRSLATLLLIRDIQ 755 (774)
Q Consensus 720 ~~aD~vIiLtdd~~~--~~~--~~~Ds~~L~tlLl~r~i~ 755 (774)
..+|.+|-++..... .++ ..-|.....+.-+++-..
T Consensus 76 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~ 115 (322)
T PLN02986 76 EGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCK 115 (322)
T ss_pred hCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 458999988863210 111 123444555555555443
No 306
>PRK07890 short chain dehydrogenase; Provisional
Probab=69.69 E-value=19 Score=37.29 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=54.1
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
.+.++|.|.+. .+..++++|.. .+..|++++++++..+....+... .+.++.++..|.++++.++++=
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAAR------AGADVVLAARTAERLDEVAAEIDD--LGRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH------cCCEEEEEeCCHHHHHHHHHHHHH--hCCceEEEecCCCCHHHHHHHHHHH
Confidence 46788999865 57778888875 246788888887666554433210 1345788899999988876421
Q ss_pred ---cccccEEEEecCC
Q 004087 458 ---VSKARAIIVLASD 470 (774)
Q Consensus 458 ---I~~A~aVIiltdd 470 (774)
..+.|.+|-++..
T Consensus 77 ~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 77 LERFGRVDALVNNAFR 92 (258)
T ss_pred HHHcCCccEEEECCcc
Confidence 1356777777643
No 307
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.60 E-value=20 Score=37.31 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=54.3
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
..+++|.|.+. .+..++++|.+. +..|++++++++..+....... -.+.++.++.+|.++++.++++-
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEA------GARVVLSARKAEELEEAAAHLE--ALGIDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 36899999755 578888888752 4678888888776655443221 11345778999999998885421
Q ss_pred ---cccccEEEEecCC
Q 004087 458 ---VSKARAIIVLASD 470 (774)
Q Consensus 458 ---I~~A~aVIiltdd 470 (774)
....|.+|-++..
T Consensus 84 ~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 84 LERFGHVDILVNNAGA 99 (259)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1246788877753
No 308
>PRK07102 short chain dehydrogenase; Provisional
Probab=69.59 E-value=19 Score=37.19 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=52.9
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI--- 458 (774)
.+++|.|.+. .+..+++.|.+. +..|++++++++..+...++.. ...+.++.++.+|.++++.++++--
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA------GARLYLAARDVERLERLADDLR-ARGAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHHH-HhcCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3789998755 578888888752 4678888888776555443321 1113468889999999988776411
Q ss_pred ccccEEEEecC
Q 004087 459 SKARAIIVLAS 469 (774)
Q Consensus 459 ~~A~aVIiltd 469 (774)
++.+.+|..+.
T Consensus 75 ~~~d~vv~~ag 85 (243)
T PRK07102 75 ALPDIVLIAVG 85 (243)
T ss_pred hcCCEEEECCc
Confidence 23477776553
No 309
>PRK09186 flagellin modification protein A; Provisional
Probab=69.57 E-value=9.2 Score=39.63 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=51.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+ .+.. .+.+-.+..+.+|.+|++.++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~---~g~~v~~~~r~~--~~~~~~~~-~l~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILE---AGGIVIAADIDK--EALNELLE-SLGK-EFKSKKLSLVELDITDQESLEEFLSK 76 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEecCh--HHHHHHHH-HHHh-hcCCCceeEEEecCCCHHHHHHHHHH
Confidence 368999998 5789999999976 489998887543 33333322 0000 11122234569999999877542
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.+.
T Consensus 77 ~~~~~~~id~vi~~A~ 92 (256)
T PRK09186 77 SAEKYGKIDGAVNCAY 92 (256)
T ss_pred HHHHcCCccEEEECCc
Confidence 1234788887764
No 310
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=69.50 E-value=25 Score=36.61 Aligned_cols=78 Identities=9% Similarity=0.010 Sum_probs=53.5
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.+++.+ .++.+.+.+ .+. ..+..+.+|.+|++.++++
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~-~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLA---EGARVVIADIK--PARARLAAL------EIG-PAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEcCC--HHHHHHHHH------HhC-CceEEEEccCCCHHHHHHHHHH
Confidence 357999998 6789999999986 49999998864 344444443 111 1245689999998877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 74 AVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 12467888877653
No 311
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=69.37 E-value=2.5 Score=40.22 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCccCceeeehhhHhHHHHHHHHHHHHHHHHHH
Q 004087 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (774)
Q Consensus 314 ~~dAly~~~~TltTvGygd~~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~ 367 (774)
+.+++|+++.++..-|.-..|.+..+|++.+++.++++++.+...+.++..+..
T Consensus 45 ~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 45 LSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 677777776665553333347788999999999999988888777777766654
No 312
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=69.15 E-value=45 Score=35.71 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=44.6
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChh-HHHHH-hhcCCCCcCCCCCceEEEEecCcccHhhhhcCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~-er~~~-l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~ 718 (774)
.+++||++|+|.-+ +++++.++ .+..+++++|.++.- +.+++ +...+ ..+++..+.++.+|+ .+.|++.
T Consensus 72 ~p~~VL~iG~G~G~--~~~~ll~~-~~~~~v~~veid~~vi~~a~~~~~~~~---~~~~~~~v~i~~~D~--~~~l~~~- 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGG--VLREVLKH-KSVEKATLVDIDEKVIELSKKFLPSLA---GSYDDPRVDLQIDDG--FKFLADT- 142 (270)
T ss_pred CCCEEEEEcCCchH--HHHHHHhC-CCcceEEEEeCCHHHHHHHHHHhHhhc---ccccCCceEEEECch--HHHHHhC-
Confidence 45699999988754 34444443 234689999976421 12222 11100 123333455677888 4566554
Q ss_pred CCCccEEEEe
Q 004087 719 LETFDSILIL 728 (774)
Q Consensus 719 I~~aD~vIiL 728 (774)
-+.||.||+=
T Consensus 143 ~~~yDvIi~D 152 (270)
T TIGR00417 143 ENTFDVIIVD 152 (270)
T ss_pred CCCccEEEEe
Confidence 3689988773
No 313
>PRK07576 short chain dehydrogenase; Provisional
Probab=69.15 E-value=19 Score=37.86 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=52.3
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
..+++|.|.+. .+..++++|... +..|++++++++..+...++... .+.++.++.+|.++++.++++-
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA------GANVAVASRSQEKVDAAVAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHH
Confidence 46899999865 577788888752 56788888877665544332211 1234678889999988876641
Q ss_pred ---cccccEEEEec
Q 004087 458 ---VSKARAIIVLA 468 (774)
Q Consensus 458 ---I~~A~aVIilt 468 (774)
....|.+|..+
T Consensus 81 ~~~~~~iD~vi~~a 94 (264)
T PRK07576 81 ADEFGPIDVLVSGA 94 (264)
T ss_pred HHHcCCCCEEEECC
Confidence 12457777655
No 314
>PRK05650 short chain dehydrogenase; Provisional
Probab=69.07 E-value=19 Score=37.82 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=53.3
Q ss_pred eEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----
Q 004087 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (774)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg----- 457 (774)
+++|.|.+. .+..++++|.+. +..|++++++.+..+....+... .+.++.++.+|.++++.++++-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~------g~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWARE------GWRLALADVNEEGGEETLKLLRE--AGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 688998765 578889998763 46788888887766655443211 2346788899999988876542
Q ss_pred -cccccEEEEecCC
Q 004087 458 -VSKARAIIVLASD 470 (774)
Q Consensus 458 -I~~A~aVIiltdd 470 (774)
....+.+|-.+..
T Consensus 74 ~~~~id~lI~~ag~ 87 (270)
T PRK05650 74 KWGGIDVIVNNAGV 87 (270)
T ss_pred HcCCCCEEEECCCC
Confidence 1245777766543
No 315
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=69.06 E-value=11 Score=39.28 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChhHH---------------------HHHhhcCCCCcCCCCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKER---------------------EKKLTDGGLDISGLMN 698 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~er---------------------~~~l~~~g~~~~~l~~ 698 (774)
...+|+|+|.|..|..+++.|... |. ++++++.+.-++- .+.+.+ .-++
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~------~np~ 90 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAA---GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRA------INPD 90 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHH------hCCC
Q ss_pred ceEEEEecCcccHhhhhcCCCCCccEEEEeeCC
Q 004087 699 IKLVHREGNAVIRRHLESLPLETFDSILILADE 731 (774)
Q Consensus 699 i~V~~i~GD~td~~~L~~~~I~~aD~vIiLtdd 731 (774)
+.+..+..+. +.+.+.+. +.++|.||..+|+
T Consensus 91 ~~i~~~~~~i-~~~~~~~~-~~~~DvVi~~~d~ 121 (228)
T cd00757 91 VEIEAYNERL-DAENAEEL-IAGYDLVLDCTDN 121 (228)
T ss_pred CEEEEeccee-CHHHHHHH-HhCCCEEEEcCCC
No 316
>PRK07775 short chain dehydrogenase; Provisional
Probab=69.04 E-value=30 Score=36.62 Aligned_cols=81 Identities=15% Similarity=0.036 Sum_probs=53.2
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc----
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~---- 716 (774)
.+.++|.|+ |.+|..+++.|.+ .|..|.++...+ ++.+.+.+. + .-....+.++++|.+|++.+++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~---~G~~V~~~~r~~--~~~~~~~~~-~---~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAA---AGFPVALGARRV--EKCEELVDK-I---RADGGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H---HhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 458999997 6789999999976 489988887543 333322210 0 0011235568999999998863
Q ss_pred --CCCCCccEEEEeeCC
Q 004087 717 --LPLETFDSILILADE 731 (774)
Q Consensus 717 --~~I~~aD~vIiLtdd 731 (774)
......|.+|-.+..
T Consensus 81 ~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 81 AEEALGEIEVLVSGAGD 97 (274)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 123467988888764
No 317
>PRK05867 short chain dehydrogenase; Provisional
Probab=69.02 E-value=21 Score=37.05 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=53.3
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...++|.|.+. .+..++++|.+. +..|++++++++..+...++... .+.++.++.+|.++++.++++-
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEA------GAQVAIAARHLDALEKLADEIGT--SGGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHH
Confidence 35788889865 588888998752 46788888888776665443211 1345778889999988876541
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 81 ~~~~g~id~lv~~ag 95 (253)
T PRK05867 81 TAELGGIDIAVCNAG 95 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 124566666654
No 318
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=68.95 E-value=21 Score=36.32 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=54.0
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc-
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA--gI- 458 (774)
.+++|.|.+. .+..++++|.+. ++.|+++.++++..+....... ..+.++.++.+|.++++.+.++ ++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD------GAKVVIYDSNEEAAEALAAELR--AAGGEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCChhHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 5799999865 578888998753 4568888888766554433221 1134577888999999887654 11
Q ss_pred ---ccccEEEEecCC
Q 004087 459 ---SKARAIIVLASD 470 (774)
Q Consensus 459 ---~~A~aVIiltdd 470 (774)
...+.||-++..
T Consensus 78 ~~~~~id~vi~~ag~ 92 (246)
T PRK05653 78 EAFGALDILVNNAGI 92 (246)
T ss_pred HHhCCCCEEEECCCc
Confidence 234888887754
No 319
>PRK08017 oxidoreductase; Provisional
Probab=68.85 E-value=10 Score=39.24 Aligned_cols=73 Identities=10% Similarity=0.035 Sum_probs=49.4
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc--CCC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES--LPL 719 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~--~~I 719 (774)
+.++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+. + +..+.+|.+|.+.++. ..+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~~--------~--~~~~~~D~~~~~~~~~~~~~i 67 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKR---RGYRVLAACRKP--DDVARMNSL--------G--FTGILLDLDDPESVERAADEV 67 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHhHHHHhC--------C--CeEEEeecCCHHHHHHHHHHH
Confidence 47999999 8999999999975 488998887643 444443321 2 2357899998876643 112
Q ss_pred -----CCccEEEEeeC
Q 004087 720 -----ETFDSILILAD 730 (774)
Q Consensus 720 -----~~aD~vIiLtd 730 (774)
...|.++-.+.
T Consensus 68 ~~~~~~~~~~ii~~ag 83 (256)
T PRK08017 68 IALTDNRLYGLFNNAG 83 (256)
T ss_pred HHhcCCCCeEEEECCC
Confidence 34566666655
No 320
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=68.84 E-value=16 Score=42.49 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEec
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNE 676 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~ 676 (774)
+-|++++|+|+|-+|..++..+.+. |++|+|++.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~L---G~~VTiie~ 204 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAAL---GSKVTVVER 204 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEec
Confidence 5688999999999999999999986 999999984
No 321
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.73 E-value=21 Score=36.56 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=52.1
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEE-ecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWML-NEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II-~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
++++|.|+ |.+|..+++.|.+ .|.++.++ ..++ +..+.+.+. +. . .+..+..+.+|.+|.+.+.+.
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~---~g~~v~~~~~r~~--~~~~~~~~~-~~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAK---EGAKVVIAYDINE--EAAQELLEE-IK--E-EGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEcCCCH--HHHHHHHHH-HH--h-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 57999998 6889999999875 48999888 6543 222222210 00 0 122355789999999877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 12367988887754
No 322
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=68.71 E-value=17 Score=43.25 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=30.0
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
+..++|+|+|+|..|...+..|.+. |.+|++++..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~---G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM---GHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecC
Confidence 4567999999999999999999764 8899999853
No 323
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=68.67 E-value=13 Score=38.60 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=49.9
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCe-EEEEecCChh----H------------HHHHhhcCCCCcCCCCCceEEE
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSE-LWMLNEVPEK----E------------REKKLTDGGLDISGLMNIKLVH 703 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~-v~II~~~p~~----e------------r~~~l~~~g~~~~~l~~i~V~~ 703 (774)
...+|+|+|.|..|..+++.|... |.. +++++.+.-+ . +.+.+++ .+. .--+++.+..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~-~l~-~lnp~v~v~~ 101 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKE-NLL-EINPFVEIEA 101 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHH-HHH-HHCCCCEEEE
Confidence 456899999999999999999863 654 8888865211 1 1111111 000 0124566665
Q ss_pred EecCcccHhhhhcCCCCCccEEEEeeCC
Q 004087 704 REGNAVIRRHLESLPLETFDSILILADE 731 (774)
Q Consensus 704 i~GD~td~~~L~~~~I~~aD~vIiLtdd 731 (774)
+....++. .+.+ -+.++|.||..+|+
T Consensus 102 ~~~~i~~~-~~~~-~~~~~DvVI~a~D~ 127 (212)
T PRK08644 102 HNEKIDED-NIEE-LFKDCDIVVEAFDN 127 (212)
T ss_pred EeeecCHH-HHHH-HHcCCCEEEECCCC
Confidence 66555442 2322 36789987776653
No 324
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=68.66 E-value=16 Score=41.29 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=49.9
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
...++|+|.|..+...++.+... +..|+++|.+++..+.....+ +.. +..+..+++.|.++ +.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~-l~~a 231 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDA-VKRA 231 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHH-HccC
Confidence 45699999999888888887653 356888999887766543321 111 22344567777766 6789
Q ss_pred cEEEEec
Q 004087 462 RAIIVLA 468 (774)
Q Consensus 462 ~aVIilt 468 (774)
|.||.++
T Consensus 232 DvVI~a~ 238 (370)
T TIGR00518 232 DLLIGAV 238 (370)
T ss_pred CEEEEcc
Confidence 9999876
No 325
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=68.60 E-value=19 Score=38.90 Aligned_cols=34 Identities=12% Similarity=-0.017 Sum_probs=29.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCC-CeEEEEecC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEV 677 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~G-s~v~II~~~ 677 (774)
...+|+|+|.|.+|..+++.|.+. | .+++|++.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~---GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART---GIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCC
Confidence 356899999999999999999874 6 689999864
No 326
>COG2985 Predicted permease [General function prediction only]
Probab=68.52 E-value=4.1 Score=46.92 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=45.0
Q ss_pred CCccCCCcHHHHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004087 561 WPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (774)
Q Consensus 561 ~p~lvGktf~el~~~~-~~~iVIGI~r~~~~g~~~lnP~~d~vL~~GD~LiVIa~~d~~~~~ 621 (774)
.|++.|+.++|+.... .++.+=-++| ++...+|++|++++.||.+-++|.++...+.
T Consensus 211 ~p~~~g~~l~d~p~l~~~~v~~sRikr----d~~~~~p~~~~~i~~Gd~l~lVG~~~~l~r~ 268 (544)
T COG2985 211 NPNLDGLNLRDLPILRQEGVYCSRIKR----DGILAVPDPDTIIQVGDELHLVGYPDALARL 268 (544)
T ss_pred CCCccccchhhcccccCCceEEEEEec----CCeeecCCCCcccccCcEEEecCChHHHHHH
Confidence 5789999999998653 3454445554 4578899999999999999999999876553
No 327
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=68.48 E-value=28 Score=35.80 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=51.4
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.++.+..... ++..+.+.+. + .. ....+..+++|.+|++.+.+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~---~g~~v~~~~~~~-~~~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQ---EGAKVVINYNSS-KEAAENLVNE-L--GK-EGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEcCCc-HHHHHHHHHH-H--Hh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 468999997 5679999999976 488887764322 2222222210 0 00 112456789999999877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 78 AVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12457988888764
No 328
>PRK05884 short chain dehydrogenase; Provisional
Probab=68.46 E-value=15 Score=37.83 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=49.3
Q ss_pred eEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---c
Q 004087 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV---S 459 (774)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI---~ 459 (774)
+++|.|.+. .+..++++|... +..|+++++++++++...++ .++.++.+|.++++.++++-- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~~------g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRND------GHKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPH 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhh
Confidence 588998854 577788888752 46888888888776654332 135578899999988876521 1
Q ss_pred cccEEEEec
Q 004087 460 KARAIIVLA 468 (774)
Q Consensus 460 ~A~aVIilt 468 (774)
+.|.+|-++
T Consensus 69 ~id~lv~~a 77 (223)
T PRK05884 69 HLDTIVNVP 77 (223)
T ss_pred cCcEEEECC
Confidence 356666554
No 329
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.38 E-value=21 Score=37.06 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=54.4
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
...++|.|.+. .+..++++|.+. +..|++++++++..+...++.. . .+.++.++++|.++++.++++--
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA------GAAVAIADLNQDGANAVADEIN-K-AGGKAIGVAMDVTNEDAVNAGIDKV 78 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCChHHHHHHHHHHH-h-cCceEEEEECCCCCHHHHHHHHHHH
Confidence 35789999855 577889999753 4678888888766555544321 1 13457889999999998875411
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
...|.+|-++..
T Consensus 79 ~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 79 AERFGSVDILVSNAGI 94 (262)
T ss_pred HHHcCCCCEEEECCcc
Confidence 236777776653
No 330
>PRK08339 short chain dehydrogenase; Provisional
Probab=68.35 E-value=21 Score=37.58 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=46.2
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
..++|.|.+. .+..++++|.+. |..|++++++++..+...++... ..+.++.++.+|.++++.++++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARA------GADVILLSRNEENLKKAREKIKS-ESNVDVSYIVADLTKREDLERT 76 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEecCCCHHHHHHH
Confidence 4678888865 688888998763 46788889888766654433211 1134578889999998887654
No 331
>PLN02240 UDP-glucose 4-epimerase
Probab=68.22 E-value=17 Score=39.72 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=51.8
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCC--hhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC-
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 718 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p--~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~- 718 (774)
++|+|.|+ |-+|..+++.|.+ .|.+|++++... ..+....+.+.. . ....+ +.++.||.+|++.++++-
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~---~g~~V~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~D~~~~~~l~~~~~ 78 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLL---AGYKVVVIDNLDNSSEEALRRVKELA-G-DLGDN--LVFHKVDLRDKEALEKVFA 78 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCCcchHHHHHHHHHhh-c-ccCcc--ceEEecCcCCHHHHHHHHH
Confidence 68999998 7899999999976 489999986421 111111222100 0 00112 446899999999887641
Q ss_pred CCCccEEEEeeC
Q 004087 719 LETFDSILILAD 730 (774)
Q Consensus 719 I~~aD~vIiLtd 730 (774)
-...|.||-++.
T Consensus 79 ~~~~d~vih~a~ 90 (352)
T PLN02240 79 STRFDAVIHFAG 90 (352)
T ss_pred hCCCCEEEEccc
Confidence 126788888765
No 332
>PRK07074 short chain dehydrogenase; Provisional
Probab=68.20 E-value=25 Score=36.53 Aligned_cols=77 Identities=14% Similarity=0.076 Sum_probs=53.8
Q ss_pred eEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc----
Q 004087 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV---- 458 (774)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI---- 458 (774)
.++|.|.+. .+..+++.|.+. +..|++++++++..+...++. .+..+.++.+|..+++.++++--
T Consensus 4 ~ilItGat~~iG~~la~~L~~~------g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAA------GDRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 578888754 688889998752 467888888877666554332 23457889999999998865422
Q ss_pred --ccccEEEEecCC
Q 004087 459 --SKARAIIVLASD 470 (774)
Q Consensus 459 --~~A~aVIiltdd 470 (774)
...|.+|-++..
T Consensus 74 ~~~~~d~vi~~ag~ 87 (257)
T PRK07074 74 ERGPVDVLVANAGA 87 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 246888887754
No 333
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=68.18 E-value=33 Score=35.56 Aligned_cols=81 Identities=19% Similarity=0.106 Sum_probs=53.0
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.+||.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + +-.+..+..+.+|.+|++.+++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~---~G~~vvl~~r~~--~~~~~~~~~-l---~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAE---YGAEIIINDITA--ERAELAVAK-L---RQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---cCCEEEEEcCCH--HHHHHHHHH-H---HhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 457999997 5689999999976 489999888653 222222210 0 00122345678999999877642
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 80 ~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 80 IEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 13457988888763
No 334
>PRK04148 hypothetical protein; Provisional
Probab=68.07 E-value=11 Score=36.35 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=40.7
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHh
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRR 712 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~ 712 (774)
..+++++|-| .|..+++.|.+. |.+|+.++.+| +..+...+.+ +.++.+|..+.+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~---G~~ViaIDi~~--~aV~~a~~~~----------~~~v~dDlf~p~ 71 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES---GFDVIVIDINE--KAVEKAKKLG----------LNAFVDDLFNPN 71 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC---CCEEEEEECCH--HHHHHHHHhC----------CeEEECcCCCCC
Confidence 4689999999 888899999863 99999999865 4555555421 235788876544
No 335
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=68.03 E-value=7.2 Score=45.26 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=30.0
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
+..++|+|+|+|..|...+..|.+ .|.+|+|++..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~---~G~~V~vie~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR---AGHKVTVFERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh---CCCcEEEEecC
Confidence 345689999999999999999986 48999999964
No 336
>PRK09135 pteridine reductase; Provisional
Probab=67.98 E-value=26 Score=35.82 Aligned_cols=81 Identities=20% Similarity=0.131 Sum_probs=50.7
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d-~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI- 458 (774)
..+++|.|.+. .|..++++|.+. +..|+++++. ++..+.....+ .......+.++.+|.++++.+.++--
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA------GYRVAIHYHRSAAEADALAAEL-NALRPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHH-HhhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 36899999866 478888998753 4677777753 33333222111 11112357788999999988776422
Q ss_pred -----ccccEEEEecC
Q 004087 459 -----SKARAIIVLAS 469 (774)
Q Consensus 459 -----~~A~aVIiltd 469 (774)
...|.||-++.
T Consensus 79 ~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 79 CVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHcCCCCEEEECCC
Confidence 24677777765
No 337
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=67.96 E-value=8.9 Score=41.72 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=36.9
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCC-CeEEEEecCChhHHHHHhhc
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~G-s~v~II~~~p~~er~~~l~~ 688 (774)
..++++|+|.|..+..++-.|.+. | .+++|++.. .+|.++|++
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~---g~~~i~V~NRt--~~ra~~La~ 168 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEA---GAKRITVVNRT--RERAEELAD 168 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc---CCCEEEEEeCC--HHHHHHHHH
Confidence 457899999999999999999874 7 689999974 588888886
No 338
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.79 E-value=21 Score=39.35 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=53.8
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...++|.|.+. .+..++++|.+. +..|+++.++++.++...++.. -.+.++.++.+|.++++.++++-
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~------G~~Vvl~~R~~~~l~~~~~~l~--~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR------GAKVVLLARGEEGLEALAAEIR--AAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH--HcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 45788889865 577788888753 4678888888776665544321 11346788999999999887651
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 124566665554
No 339
>PRK05442 malate dehydrogenase; Provisional
Probab=67.68 E-value=16 Score=40.51 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=60.6
Q ss_pred CCCceEEEEcc-cccHHHHHHHHHH--hcC--CCCeEEEEecCChhHHHH----HhhcCCCCcCCCCCceEEEEecCccc
Q 004087 640 KYPEKILFCGW-RRDIDDMIMVLEA--FLA--PGSELWMLNEVPEKEREK----KLTDGGLDISGLMNIKLVHREGNAVI 710 (774)
Q Consensus 640 ~~~~rILI~Gw-g~~g~~l~~~L~~--~l~--~Gs~v~II~~~p~~er~~----~l~~~g~~~~~l~~i~V~~i~GD~td 710 (774)
+.+.+|.|+|. |.+|..++-.|.. ... .-.++.+++.++++++++ .|.+... ..+.+..+ ..||
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--~~~~~~~i--~~~~--- 74 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--PLLAGVVI--TDDP--- 74 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--hhcCCcEE--ecCh---
Confidence 35679999998 9999999887753 110 113899998754433222 1222100 01122221 1222
Q ss_pred HhhhhcCCCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhhhcc
Q 004087 711 RRHLESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRYKAY 760 (774)
Q Consensus 711 ~~~L~~~~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~~~~ 760 (774)
.+.+.++|.||++++-.. .+.+.++.-.-...-++|++.++-.+
T Consensus 75 -----y~~~~daDiVVitaG~~~-k~g~tR~dll~~Na~i~~~i~~~i~~ 118 (326)
T PRK05442 75 -----NVAFKDADVALLVGARPR-GPGMERKDLLEANGAIFTAQGKALNE 118 (326)
T ss_pred -----HHHhCCCCEEEEeCCCCC-CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 244778898888876432 13345555556667777777775433
No 340
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.66 E-value=22 Score=39.29 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=54.9
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
..+++|.|.+. .+..++++|... +..|+++.++++.++...++.. . .+.++.++..|.++++.++++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~------G~~Vvl~~R~~~~l~~~~~~~~-~-~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARR------GARLVLAARDEEALQAVAEECR-A-LGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH-h-cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 45889999865 577888888752 4678889988877766544321 1 1345778888999988877642
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 134577777664
No 341
>PRK07890 short chain dehydrogenase; Provisional
Probab=67.64 E-value=10 Score=39.31 Aligned_cols=79 Identities=8% Similarity=0.052 Sum_probs=53.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCC--CceEEEEecCcccHhhhhc--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLES-- 716 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~--~i~V~~i~GD~td~~~L~~-- 716 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++..+ +..+.+.+ .++ ...+..+..|.+|++.+++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAAR---AGADVVLAARTA--ERLDEVAA------EIDDLGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHH------HHHHhCCceEEEecCCCCHHHHHHHH
Confidence 467999998 5789999999986 499999998654 33333322 111 1234578999999887753
Q ss_pred ----CCCCCccEEEEeeCC
Q 004087 717 ----LPLETFDSILILADE 731 (774)
Q Consensus 717 ----~~I~~aD~vIiLtdd 731 (774)
......|.+|-.+..
T Consensus 74 ~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 74 ALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHcCCccEEEECCcc
Confidence 123567988888753
No 342
>PRK07576 short chain dehydrogenase; Provisional
Probab=67.55 E-value=36 Score=35.74 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=51.1
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHH--HHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER--EKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er--~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|..|.+++..+++.+ .+.+.+ . +..+..+.+|.+|++.+++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~-------~-~~~~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFAR---AGANVAVASRSQEKVDAAVAQLQQ-------A-GPEGLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHH-------h-CCceEEEECCCCCHHHHHHHH
Confidence 468999998 6789999999976 4999999986543211 111221 1 11234679999998877542
Q ss_pred -----CCCCccEEEEeeC
Q 004087 718 -----PLETFDSILILAD 730 (774)
Q Consensus 718 -----~I~~aD~vIiLtd 730 (774)
.....|.+|..+.
T Consensus 78 ~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 78 AQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1245798887654
No 343
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=67.44 E-value=13 Score=39.26 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=52.3
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCC-CeEEEEecCChh----HHHHHhh--cCCCC---------cCCCCCceEEEEecC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEK----EREKKLT--DGGLD---------ISGLMNIKLVHREGN 707 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~G-s~v~II~~~p~~----er~~~l~--~~g~~---------~~~l~~i~V~~i~GD 707 (774)
||+|+|.|..|..+++.|... | -++++++.+.-+ .|.-... +.|.. ....+++.+...+++
T Consensus 1 kVlvvG~GGlG~eilk~La~~---Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM---GFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 589999999999999999763 3 468888854322 1211110 11100 012367777778888
Q ss_pred cccHhhhhcCCCCCccEEEEeeCC
Q 004087 708 AVIRRHLESLPLETFDSILILADE 731 (774)
Q Consensus 708 ~td~~~L~~~~I~~aD~vIiLtdd 731 (774)
..++..+...-++++|.||...|.
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~Dn 101 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALDN 101 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCCC
Confidence 765544444457889977776553
No 344
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=67.40 E-value=12 Score=42.32 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=51.4
Q ss_pred cCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHH--HHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004087 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD--IAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (774)
Q Consensus 382 k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~--l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI 458 (774)
...++|.|.. ..|..++++|... ++.|+++.+++...+.. ..+... ...++.++.||.+|++.++++--
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR------GYNVVAVAREKSGIRGKNGKEDTKK--ELPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEEechhhccccchhhHHhh--hcCCceEEEeeCCCHHHHHHHHH
Confidence 4578999974 4588899999753 46777777765432110 000000 12357889999999999987632
Q ss_pred c---cccEEEEecC
Q 004087 459 S---KARAIIVLAS 469 (774)
Q Consensus 459 ~---~A~aVIiltd 469 (774)
. .+|.||-+..
T Consensus 132 ~~~~~~D~Vi~~aa 145 (390)
T PLN02657 132 SEGDPVDVVVSCLA 145 (390)
T ss_pred HhCCCCcEEEECCc
Confidence 2 5888887653
No 345
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.34 E-value=23 Score=36.95 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=52.9
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
+.++|.|++. .+..++++|... +..|++++++++..+...++... .+.++.++.+|.++++.++++=
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~------g~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA------GAQLVLAARNETRLASLAQELAD--HGGEALVVPTDVSDAEACERLIEAAV 73 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4689999855 577788888752 46788888887666554433211 1345778899999988876541
Q ss_pred --cccccEEEEecCC
Q 004087 458 --VSKARAIIVLASD 470 (774)
Q Consensus 458 --I~~A~aVIiltdd 470 (774)
....|.+|-++..
T Consensus 74 ~~~~~id~vi~~ag~ 88 (263)
T PRK06181 74 ARFGGIDILVNNAGI 88 (263)
T ss_pred HHcCCCCEEEECCCc
Confidence 1246777777643
No 346
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=67.33 E-value=26 Score=40.08 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=52.1
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~ 720 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++..+.+.+. ...+..+.+|.+|++.+++. ++
T Consensus 178 gK~VLITGASgGIG~aLA~~La~---~G~~Vi~l~r~~-~~l~~~~~~~--------~~~v~~v~~Dvsd~~~v~~~-l~ 244 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQ---QGAKVVALTSNS-DKITLEINGE--------DLPVKTLHWQVGQEAALAEL-LE 244 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHhhc--------CCCeEEEEeeCCCHHHHHHH-hC
Confidence 358999998 6789999999976 489999887643 2212222110 11234578999999887664 46
Q ss_pred CccEEEEeeC
Q 004087 721 TFDSILILAD 730 (774)
Q Consensus 721 ~aD~vIiLtd 730 (774)
..|.+|..++
T Consensus 245 ~IDiLInnAG 254 (406)
T PRK07424 245 KVDILIINHG 254 (406)
T ss_pred CCCEEEECCC
Confidence 7898887765
No 347
>PRK05717 oxidoreductase; Validated
Probab=67.32 E-value=26 Score=36.41 Aligned_cols=78 Identities=21% Similarity=0.094 Sum_probs=51.5
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA--gI 458 (774)
.+.++|.|.+. .|..++++|.+. +..|++++.+++..+...++. +.++.++.+|.++.+.++++ .+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAE------GWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 45688888754 588889998763 467888887765544433221 23577889999998877553 11
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
.+.|.+|-++.-
T Consensus 79 ~~~~g~id~li~~ag~ 94 (255)
T PRK05717 79 LGQFGRLDALVCNAAI 94 (255)
T ss_pred HHHhCCCCEEEECCCc
Confidence 245777776653
No 348
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=67.32 E-value=11 Score=42.26 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=47.2
Q ss_pred ceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCc
Q 004087 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (774)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~a 722 (774)
++|+|+|+|..|..|+....+. |.++.+++.+++. -+..+++ .++.+|..|.+.|.+. ++.+
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l---G~~v~~~d~~~~~-pa~~~ad-------------~~~~~~~~D~~~l~~~-a~~~ 64 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL---GYKVIVLDPDPDS-PAAQVAD-------------EVIVADYDDVAALREL-AEQC 64 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCCCC-chhHhCc-------------eEEecCCCCHHHHHHH-HhcC
Confidence 4799999999998888877764 9999999876533 2233322 2567999999999875 3467
Q ss_pred cEE
Q 004087 723 DSI 725 (774)
Q Consensus 723 D~v 725 (774)
|.+
T Consensus 65 dvi 67 (372)
T PRK06019 65 DVI 67 (372)
T ss_pred CEE
Confidence 754
No 349
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=67.28 E-value=20 Score=38.94 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=51.2
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCe-EEEEecCCh-hHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSE-LWMLNEVPE-KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~-v~II~~~p~-~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
.++++|+|.|..|..++..|.+. |.. |+|++.++. .+|.+.+.+. +. ....... ....|..+.+.+++ .+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~---G~~~V~I~~R~~~~~~~a~~l~~~-l~-~~~~~~~--~~~~d~~~~~~~~~-~~ 197 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALD---GAKEITIFNIKDDFYERAEQTAEK-IK-QEVPECI--VNVYDLNDTEKLKA-EI 197 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCchHHHHHHHHHHH-Hh-hcCCCce--eEEechhhhhHHHh-hh
Confidence 46899999999999999988753 765 999987531 2555555430 00 0111222 23456666655544 36
Q ss_pred CCccEEEEeeC
Q 004087 720 ETFDSILILAD 730 (774)
Q Consensus 720 ~~aD~vIiLtd 730 (774)
+++|.+|-.|-
T Consensus 198 ~~~DilINaTp 208 (289)
T PRK12548 198 ASSDILVNATL 208 (289)
T ss_pred ccCCEEEEeCC
Confidence 67898888774
No 350
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=67.28 E-value=8.4 Score=42.13 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=47.8
Q ss_pred eEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcc--cCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~--~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
+|.|+|.|..+..++..|...+ ....++++|.+++..+....++... +....+.+. + .+.++ +.+|
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g----~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~-----l~~a 69 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQG----IADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSD-----CKDA 69 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHH-----hCCC
Confidence 7999999999999988886532 2257899998887666554433110 111222222 2 33333 3689
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
|.||++++.
T Consensus 70 DIVIitag~ 78 (306)
T cd05291 70 DIVVITAGA 78 (306)
T ss_pred CEEEEccCC
Confidence 999999986
No 351
>PRK06196 oxidoreductase; Provisional
Probab=67.26 E-value=21 Score=38.74 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=53.4
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
..++|.|.+. .|..++++|... +..|+++.++++..+...++. .++.++.+|.++.+.++++-
T Consensus 27 k~vlITGasggIG~~~a~~L~~~------G~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQA------GAHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHH
Confidence 4788899865 578889998763 467888888877666554432 13678899999998876542
Q ss_pred --cccccEEEEecC
Q 004087 458 --VSKARAIIVLAS 469 (774)
Q Consensus 458 --I~~A~aVIiltd 469 (774)
..+.|.+|-.+.
T Consensus 95 ~~~~~iD~li~nAg 108 (315)
T PRK06196 95 DSGRRIDILINNAG 108 (315)
T ss_pred hcCCCCCEEEECCC
Confidence 135688887765
No 352
>PRK09072 short chain dehydrogenase; Provisional
Probab=67.19 E-value=23 Score=36.97 Aligned_cols=80 Identities=23% Similarity=0.168 Sum_probs=54.5
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...++|.|.+. .|..++++|.+. |..|++++++++..+....+.. .+.++.++.+|.++++.++++-
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAA------GARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHH
Confidence 35788998755 578889998752 4678888888877665544321 1336788899999988766531
Q ss_pred --cccccEEEEecCC
Q 004087 458 --VSKARAIIVLASD 470 (774)
Q Consensus 458 --I~~A~aVIiltdd 470 (774)
....|.+|.++..
T Consensus 76 ~~~~~id~lv~~ag~ 90 (263)
T PRK09072 76 REMGGINVLINNAGV 90 (263)
T ss_pred HhcCCCCEEEECCCC
Confidence 2356777777653
No 353
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.19 E-value=26 Score=36.42 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=52.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++..++ ++.+.+.+. + .. .+..+..+.+|.+|++.++++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVE---AGAQVAIAARHL--DALEKLADE-I--GT-SGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCCH--HHHHHHHHH-H--Hh-cCCeEEEEEccCCCHHHHHHHHHH
Confidence 467999998 5789999999986 499998887643 333333320 0 00 112345689999998876542
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.+.
T Consensus 80 ~~~~~g~id~lv~~ag 95 (253)
T PRK05867 80 VTAELGGIDIAVCNAG 95 (253)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1246788887765
No 354
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=67.17 E-value=53 Score=37.64 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=52.5
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
..+++|.|++. .|..++++|... |..|++++.+++..+..... ...++.++.+|.++++.+++. ..+
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~------G~~Vi~l~r~~~~l~~~~~~-----~~~~v~~v~~Dvsd~~~v~~~-l~~ 245 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ------GAKVVALTSNSDKITLEING-----EDLPVKTLHWQVGQEAALAEL-LEK 245 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHhh-----cCCCeEEEEeeCCCHHHHHHH-hCC
Confidence 35788999865 578888988752 46777888776655433221 122466788999999988764 457
Q ss_pred ccEEEEecCC
Q 004087 461 ARAIIVLASD 470 (774)
Q Consensus 461 A~aVIiltdd 470 (774)
.|.+|..+.-
T Consensus 246 IDiLInnAGi 255 (406)
T PRK07424 246 VDILIINHGI 255 (406)
T ss_pred CCEEEECCCc
Confidence 8888877643
No 355
>PRK12742 oxidoreductase; Provisional
Probab=67.10 E-value=48 Score=33.77 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=50.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--C
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 718 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~ 718 (774)
.++|+|.|+ |.+|..+++.|.+ .|.+|.+.... .+++.+.+.+ .+ +. ..+.+|.+|++.+.+. .
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~---~G~~v~~~~~~-~~~~~~~l~~------~~-~~--~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVT---DGANVRFTYAG-SKDAAERLAQ------ET-GA--TAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEecCC-CHHHHHHHHH------Hh-CC--eEEecCCCCHHHHHHHHHH
Confidence 468999997 6889999999976 48888776432 2344444433 11 12 3568999998766542 1
Q ss_pred CCCccEEEEeeCC
Q 004087 719 LETFDSILILADE 731 (774)
Q Consensus 719 I~~aD~vIiLtdd 731 (774)
....|.+|-.+..
T Consensus 73 ~~~id~li~~ag~ 85 (237)
T PRK12742 73 SGALDILVVNAGI 85 (237)
T ss_pred hCCCcEEEECCCC
Confidence 3457888877653
No 356
>PRK08339 short chain dehydrogenase; Provisional
Probab=67.08 E-value=25 Score=37.01 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=52.4
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|++ .+|..+++.|.+ .|.+|.+++.++ ++.+.+.+. + ....+..+..+.+|.+|++.++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~---~G~~V~~~~r~~--~~~~~~~~~-~--~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLAR---AGADVILLSRNE--ENLKKAREK-I--KSESNVDVSYIVADLTKREDLERTVKE 79 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--HhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 3578999984 689999999986 499999887643 333333320 0 001123455789999998876542
Q ss_pred --CCCCccEEEEeeC
Q 004087 718 --PLETFDSILILAD 730 (774)
Q Consensus 718 --~I~~aD~vIiLtd 730 (774)
.....|.+|..++
T Consensus 80 ~~~~g~iD~lv~nag 94 (263)
T PRK08339 80 LKNIGEPDIFFFSTG 94 (263)
T ss_pred HHhhCCCcEEEECCC
Confidence 1245788877665
No 357
>PRK09072 short chain dehydrogenase; Provisional
Probab=67.07 E-value=31 Score=36.09 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=53.7
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.+++.++ ++.+.+... + .. +..+.++.+|.+|.+.++++
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~---~G~~V~~~~r~~--~~~~~~~~~-~---~~-~~~~~~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAA---AGARLLLVGRNA--EKLEALAAR-L---PY-PGRHRWVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHHH-H---hc-CCceEEEEccCCCHHHHHHHHHH
Confidence 357999997 6789999999976 499999998643 333333220 0 01 12355789999998866432
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|..++.
T Consensus 75 ~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 75 AREMGGINVLINNAGV 90 (263)
T ss_pred HHhcCCCCEEEECCCC
Confidence 13567999888764
No 358
>PRK06953 short chain dehydrogenase; Provisional
Probab=67.01 E-value=23 Score=36.06 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=51.5
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--CC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 719 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--~I 719 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ +..+.+.+. + +..+.+|.+|++.++++ .+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~---~G~~v~~~~r~~--~~~~~~~~~--------~--~~~~~~D~~~~~~v~~~~~~~ 66 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRA---DGWRVIATARDA--AALAALQAL--------G--AEALALDVADPASVAGLAWKL 66 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHh---CCCEEEEEECCH--HHHHHHHhc--------c--ceEEEecCCCHHHHHHHHHHh
Confidence 46888886 6789999999975 499999997653 333334321 2 23579999999888763 12
Q ss_pred --CCccEEEEeeCC
Q 004087 720 --ETFDSILILADE 731 (774)
Q Consensus 720 --~~aD~vIiLtdd 731 (774)
+..|.+|-.++.
T Consensus 67 ~~~~~d~vi~~ag~ 80 (222)
T PRK06953 67 DGEALDAAVYVAGV 80 (222)
T ss_pred cCCCCCEEEECCCc
Confidence 358988887653
No 359
>PRK05650 short chain dehydrogenase; Provisional
Probab=67.00 E-value=33 Score=36.05 Aligned_cols=79 Identities=13% Similarity=0.001 Sum_probs=50.8
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-----
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 717 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~----- 717 (774)
+++|.|+ |.+|..+++.|.+ .|..|.++..++ ++.+.+.+. + +-.+..+.++.+|.+|++.++++
T Consensus 2 ~vlVtGasggIG~~la~~l~~---~g~~V~~~~r~~--~~~~~~~~~-l---~~~~~~~~~~~~D~~~~~~~~~~~~~i~ 72 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAR---EGWRLALADVNE--EGGEETLKL-L---REAGGDGFYQRCDVRDYSQLTALAQACE 72 (270)
T ss_pred EEEEecCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H---HhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 6889987 6789999999976 499998887543 222222110 0 00122345689999998877542
Q ss_pred -CCCCccEEEEeeCC
Q 004087 718 -PLETFDSILILADE 731 (774)
Q Consensus 718 -~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 73 ~~~~~id~lI~~ag~ 87 (270)
T PRK05650 73 EKWGGIDVIVNNAGV 87 (270)
T ss_pred HHcCCCCEEEECCCC
Confidence 23467888877653
No 360
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.00 E-value=57 Score=35.74 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=41.3
Q ss_pred ccCeEEEEcccch-HHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004087 381 EKNHILILGWSDK-LGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (774)
Q Consensus 381 ~k~HIII~G~g~~-~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~r 455 (774)
...-++|.|.|.- |..++.||.+ .+..+++.|.+++..++..++... . + .+.+...|.++.+++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~------rg~~~vl~Din~~~~~etv~~~~~-~-g-~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAK------RGAKLVLWDINKQGNEETVKEIRK-I-G-EAKAYTCDISDREEIYR 103 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHH------hCCeEEEEeccccchHHHHHHHHh-c-C-ceeEEEecCCCHHHHHH
Confidence 4567888888874 6677888875 246788888887655544332210 0 2 35566666666666543
No 361
>PRK05884 short chain dehydrogenase; Provisional
Probab=66.99 E-value=11 Score=38.84 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=50.8
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC--C-
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--L- 719 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~--I- 719 (774)
+++|.|+ |.+|..+++.|.+ .|.+|.++..+ +++.+.+.+ .+ + +.++.+|.+|++.++++- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~---~g~~v~~~~r~--~~~~~~~~~------~~-~--~~~~~~D~~~~~~v~~~~~~~~ 67 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRN---DGHKVTLVGAR--RDDLEVAAK------EL-D--VDAIVCDNTDPASLEEARGLFP 67 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------hc-c--CcEEecCCCCHHHHHHHHHHHh
Confidence 5889987 6789999999975 48999998764 355555543 11 1 335789999998876531 1
Q ss_pred CCccEEEEeeC
Q 004087 720 ETFDSILILAD 730 (774)
Q Consensus 720 ~~aD~vIiLtd 730 (774)
+..|.+|-.++
T Consensus 68 ~~id~lv~~ag 78 (223)
T PRK05884 68 HHLDTIVNVPA 78 (223)
T ss_pred hcCcEEEECCC
Confidence 25788887653
No 362
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.86 E-value=26 Score=36.06 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=52.3
Q ss_pred cCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
...++|.|.+ ..+..++++|... +..|++++++++..+...++... .+..+.++.+|.++.+.++++--
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALARE------GASVVVADINAEGAERVAKQIVA--DGGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4579999984 4688889999763 46788888877655444332211 12246678899999887655321
Q ss_pred ----ccccEEEEecC
Q 004087 459 ----SKARAIIVLAS 469 (774)
Q Consensus 459 ----~~A~aVIiltd 469 (774)
..-|.||-++.
T Consensus 78 ~~~~~~id~vi~~ag 92 (250)
T PRK07774 78 VSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHhCCCCEEEECCC
Confidence 24677877665
No 363
>PRK06500 short chain dehydrogenase; Provisional
Probab=66.73 E-value=38 Score=34.78 Aligned_cols=78 Identities=12% Similarity=-0.004 Sum_probs=51.7
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc----
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~---- 716 (774)
.++++|.|+ |.+|..+++.|.+ .|..|.++..+ ++..+.+.+ ++ +..+..+++|.+|.+.+++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~---~g~~v~~~~r~--~~~~~~~~~------~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLA---EGARVAITGRD--PASLEAARA------EL-GESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEecCC--HHHHHHHHH------Hh-CCceEEEEecCCCHHHHHHHHHH
Confidence 357999998 6789999999986 48999888754 233333332 11 1234568899998776542
Q ss_pred --CCCCCccEEEEeeCC
Q 004087 717 --LPLETFDSILILADE 731 (774)
Q Consensus 717 --~~I~~aD~vIiLtdd 731 (774)
......|.+|-.+..
T Consensus 74 ~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 74 LAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 123467888877653
No 364
>PRK05876 short chain dehydrogenase; Provisional
Probab=66.69 E-value=25 Score=37.39 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=52.0
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI--- 458 (774)
..++|.|.+. .+..++++|... +..|++++.+++.++...+++.. .+.++.++..|.++++.++++--
T Consensus 7 k~vlVTGas~gIG~ala~~La~~------G~~Vv~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARR------GARVVLGDVDKPGLRQAVNHLRA--EGFDVHGVMCDVRHREEVTHLADEAF 78 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4688888765 577888888752 46788888887776655443211 13357778889999888766421
Q ss_pred ---ccccEEEEecC
Q 004087 459 ---SKARAIIVLAS 469 (774)
Q Consensus 459 ---~~A~aVIiltd 469 (774)
..-|.+|-.+.
T Consensus 79 ~~~g~id~li~nAg 92 (275)
T PRK05876 79 RLLGHVDVVFSNAG 92 (275)
T ss_pred HHcCCCCEEEECCC
Confidence 23466666554
No 365
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=66.65 E-value=12 Score=43.28 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.5
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
+++++|+|+|.+|..++..|.+. |.+|++++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~---g~~Vtli~~~ 198 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGL---GSETHLVIRH 198 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---CCcEEEEecC
Confidence 57999999999999999999874 8999999854
No 366
>PRK12746 short chain dehydrogenase; Provisional
Probab=66.58 E-value=58 Score=33.60 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=51.5
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|..|.++... ..+..+.+.+. +. . .+..+.++++|.+|++.+.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~---~G~~v~i~~~r-~~~~~~~~~~~-~~--~-~~~~~~~~~~D~~d~~~i~~~~~~ 77 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLAN---DGALVAIHYGR-NKQAADETIRE-IE--S-NGGKAFLIEADLNSIDGVKKLVEQ 77 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCC-CHHHHHHHHHH-HH--h-cCCcEEEEEcCcCCHHHHHHHHHH
Confidence 368999997 5789999999976 48888775322 22333322220 00 0 122355689999998877542
Q ss_pred ---------CCCCccEEEEeeCC
Q 004087 718 ---------PLETFDSILILADE 731 (774)
Q Consensus 718 ---------~I~~aD~vIiLtdd 731 (774)
+-...|.+|-.++.
T Consensus 78 ~~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 78 LKNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred HHHHhccccCCCCccEEEECCCC
Confidence 12467988877764
No 367
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=66.54 E-value=18 Score=37.00 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=52.1
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCc
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~a 722 (774)
+|-|+|. |+.|..++++.-. +|.+||-|-.+|.+ +. .++++. .+++|.-|.+.| ...+..+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~---RGHeVTAivRn~~K-----~~-------~~~~~~--i~q~Difd~~~~-a~~l~g~ 63 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALK---RGHEVTAIVRNASK-----LA-------ARQGVT--ILQKDIFDLTSL-ASDLAGH 63 (211)
T ss_pred eEEEEecCchhHHHHHHHHHh---CCCeeEEEEeChHh-----cc-------ccccce--eecccccChhhh-HhhhcCC
Confidence 4666666 8899999988754 69999999877633 11 124444 489999998888 5669999
Q ss_pred cEEEEeeCC
Q 004087 723 DSILILADE 731 (774)
Q Consensus 723 D~vIiLtdd 731 (774)
|+||..-+.
T Consensus 64 DaVIsA~~~ 72 (211)
T COG2910 64 DAVISAFGA 72 (211)
T ss_pred ceEEEeccC
Confidence 999987654
No 368
>PRK06172 short chain dehydrogenase; Provisional
Probab=66.39 E-value=19 Score=37.27 Aligned_cols=81 Identities=7% Similarity=-0.000 Sum_probs=52.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + .+. +..+..+.+|.+|.+.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAR---EGAKVVVADRDA--AGGEETVAL-I--REA-GGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCceEEEEcCCCCHHHHHHHHHH
Confidence 468999998 5789999999976 489999998754 222222210 0 011 22355789999998877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 78 ~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 78 TIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 12456888877653
No 369
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=66.39 E-value=53 Score=34.34 Aligned_cols=81 Identities=10% Similarity=-0.034 Sum_probs=52.9
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc----
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~---- 716 (774)
.++++|.|++ .+|..+++.|.+ .|.+|.+++..+ ++.+.+.+. + .. .+..+..+.+|.+|++.+++
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~---~G~~vv~~~~~~--~~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAK---AGATIVFNDINQ--ELVDKGLAA-Y--RE-LGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHH-H--Hh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 4679999984 679999999976 489998887543 332222210 0 00 12245578999999987754
Q ss_pred --CCCCCccEEEEeeCC
Q 004087 717 --LPLETFDSILILADE 731 (774)
Q Consensus 717 --~~I~~aD~vIiLtdd 731 (774)
......|.+|..+..
T Consensus 81 ~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 81 IEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 223567998887763
No 370
>PRK07904 short chain dehydrogenase; Provisional
Probab=66.38 E-value=15 Score=38.61 Aligned_cols=81 Identities=7% Similarity=-0.070 Sum_probs=50.7
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhH---HHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKE---REKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~e---r~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~ 716 (774)
..++|+|.|+ |.+|..++++|.+. .|..|.++..+++.. ..+++.+ ..+..+..+.+|.+|.+..++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~r~~~~~~~~~~~~l~~-------~~~~~v~~~~~D~~~~~~~~~ 77 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN--APARVVLAALPDDPRRDAAVAQMKA-------AGASSVEVIDFDALDTDSHPK 77 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEeCCcchhHHHHHHHHHh-------cCCCceEEEEecCCChHHHHH
Confidence 4568999998 56799999998753 248998887654321 1222322 112235568999998775432
Q ss_pred ----C-CCCCccEEEEeeC
Q 004087 717 ----L-PLETFDSILILAD 730 (774)
Q Consensus 717 ----~-~I~~aD~vIiLtd 730 (774)
+ .-...|.+|.-++
T Consensus 78 ~~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 78 VIDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHHHhcCCCCEEEEeee
Confidence 1 1147888776554
No 371
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=66.36 E-value=10 Score=41.29 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=32.6
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhc
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~ 688 (774)
+|.|+|.|..|..++..|.+ .|.+|++++.++ +..+.+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~~--~~~~~~~~ 42 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR---NGHDVTLWARDP--EQAAEINA 42 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCCEEEEEECCH--HHHHHHHH
Confidence 69999999999999999976 489999998643 55565654
No 372
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.24 E-value=43 Score=34.84 Aligned_cols=79 Identities=9% Similarity=0.076 Sum_probs=52.5
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHH-HhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREK-KLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~-~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-- 717 (774)
.+++||.|+ +.+|..+++.|.+ .|..|.++......+... .+.+ . +..+.++.+|.++.+.+++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~---~G~~v~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAK---AGADIIITTHGTNWDETRRLIEK-------E-GRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCcHHHHHHHHHHh-------c-CCceEEEEcCCCCHHHHHHHHH
Confidence 468999998 5679999999976 499999987642222222 2222 1 12345789999998876542
Q ss_pred ----CCCCccEEEEeeCC
Q 004087 718 ----PLETFDSILILADE 731 (774)
Q Consensus 718 ----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 84 ~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 84 EALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 12457888887764
No 373
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=66.23 E-value=41 Score=33.53 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=53.1
Q ss_pred EEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCC--hh---HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-
Q 004087 645 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EK---EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (774)
Q Consensus 645 ILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p--~~---er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~- 717 (774)
++|.|+ |..|..+++.|.+. -..++.++...+ .. +..+.+.+ .+..|.++..|.+|++.++++
T Consensus 3 ylitGG~gglg~~la~~La~~--~~~~~il~~r~~~~~~~~~~~i~~l~~--------~g~~v~~~~~Dv~d~~~v~~~~ 72 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAER--GARRLILLGRSGAPSAEAEAAIRELES--------AGARVEYVQCDVTDPEAVAAAL 72 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--T-SEEEEEESSGGGSTTHHHHHHHHHH--------TT-EEEEEE--TTSHHHHHHHH
T ss_pred EEEECCccHHHHHHHHHHHHc--CCCEEEEeccCCCccHHHHHHHHHHHh--------CCCceeeeccCccCHHHHHHHH
Confidence 678875 77899999999874 256788888762 22 23334443 256788899999999988652
Q ss_pred -CC----CCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHH
Q 004087 718 -PL----ETFDSILILADESLEDSIVHSDSRSLATLLLIR 752 (774)
Q Consensus 718 -~I----~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r 752 (774)
.+ ...|.||=.+..-.+....+.|...+-..+..|
T Consensus 73 ~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~K 112 (181)
T PF08659_consen 73 AQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPK 112 (181)
T ss_dssp HTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHH
T ss_pred HHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhh
Confidence 22 456777777653222233444555544444433
No 374
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=66.10 E-value=6.2 Score=39.40 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=41.1
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~ 721 (774)
.++|.|+|||.-|...+.-|.+. |.+|+|-.....+.|.+.-++ |++ + . ...++ +..
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS---G~~V~Vglr~~s~s~~~A~~~-Gf~--------v-------~---~~~eA-v~~ 60 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS---GVNVIVGLREGSASWEKAKAD-GFE--------V-------M---SVAEA-VKK 60 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC---C-EEEEEE-TTCHHHHHHHHT-T-E--------C-------C---EHHHH-HHC
T ss_pred CCEEEEECCChHHHHHHHHHHhC---CCCEEEEecCCCcCHHHHHHC-CCe--------e-------c---cHHHH-Hhh
Confidence 46899999999999999999874 999988886543344444443 432 1 1 12222 667
Q ss_pred ccEEEEeeCC
Q 004087 722 FDSILILADE 731 (774)
Q Consensus 722 aD~vIiLtdd 731 (774)
+|.+++|+-|
T Consensus 61 aDvV~~L~PD 70 (165)
T PF07991_consen 61 ADVVMLLLPD 70 (165)
T ss_dssp -SEEEE-S-H
T ss_pred CCEEEEeCCh
Confidence 8999999754
No 375
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.98 E-value=18 Score=36.23 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=26.6
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEV 677 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~ 677 (774)
+|+|+|.|..|..+++.|.+. |. ++++++.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~---Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS---GVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCC
Confidence 589999999999999999863 76 49999864
No 376
>PRK06179 short chain dehydrogenase; Provisional
Probab=65.89 E-value=12 Score=39.19 Aligned_cols=73 Identities=16% Similarity=0.002 Sum_probs=51.2
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
+..++|.|.+. .|..++++|... +..|+++.++++..+. ..++.++++|.+|++.++++--
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA------GYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC------CCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHH
Confidence 35789999765 577888888752 4678888887654321 1357789999999998877521
Q ss_pred ----ccccEEEEecCC
Q 004087 459 ----SKARAIIVLASD 470 (774)
Q Consensus 459 ----~~A~aVIiltdd 470 (774)
...|.+|.++.-
T Consensus 68 ~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 68 IARAGRIDVLVNNAGV 83 (270)
T ss_pred HHhCCCCCEEEECCCC
Confidence 245788877754
No 377
>PRK07814 short chain dehydrogenase; Provisional
Probab=65.88 E-value=31 Score=36.12 Aligned_cols=80 Identities=5% Similarity=0.079 Sum_probs=52.8
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|++ .+|..+++.|.+ .|.+|.++...+ +..+.+.+. +. . .+..+.++.+|.++++.++++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~---~G~~Vi~~~r~~--~~~~~~~~~-l~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAE---AGADVLIAARTE--SQLDEVAEQ-IR--A-AGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-HH--h-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 4579999985 589999999976 499998888653 322333220 00 0 122355689999999987542
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 81 ~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 81 AVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHcCCCCEEEECCC
Confidence 2346788887765
No 378
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=65.86 E-value=8.3 Score=38.52 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=39.8
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e-~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
...|.|+|||.++..-+..|+.. +..|++..++.. ..+++.++ ++. ..+..+| +++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~--------Gf~--------v~~~~eA-v~~ 60 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKAD--------GFE--------VMSVAEA-VKK 60 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHT--------T-E--------CCEHHHH-HHC
T ss_pred CCEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHC--------CCe--------eccHHHH-Hhh
Confidence 46889999999999889999763 467777765543 44444321 222 2244555 778
Q ss_pred ccEEEEecCC
Q 004087 461 ARAIIVLASD 470 (774)
Q Consensus 461 A~aVIiltdd 470 (774)
||.|+++++|
T Consensus 61 aDvV~~L~PD 70 (165)
T PF07991_consen 61 ADVVMLLLPD 70 (165)
T ss_dssp -SEEEE-S-H
T ss_pred CCEEEEeCCh
Confidence 9999999974
No 379
>PRK06180 short chain dehydrogenase; Provisional
Probab=65.79 E-value=23 Score=37.56 Aligned_cols=77 Identities=18% Similarity=0.025 Sum_probs=52.6
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI--- 458 (774)
+.++|.|.+. .|..++++|... |..|++++++++..+..... .+.++.++.+|.++++.+.++--
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~------G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAA------GHRVVGTVRSEAARADFEAL-----HPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhC------cCEEEEEeCCHHHHHHHHhh-----cCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 4689999865 577788888752 47788889888766554322 12357788999999988765411
Q ss_pred ---ccccEEEEecCC
Q 004087 459 ---SKARAIIVLASD 470 (774)
Q Consensus 459 ---~~A~aVIiltdd 470 (774)
...+.+|-++..
T Consensus 74 ~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 74 ATFGPIDVLVNNAGY 88 (277)
T ss_pred HHhCCCCEEEECCCc
Confidence 245777766654
No 380
>PRK07825 short chain dehydrogenase; Provisional
Probab=65.77 E-value=22 Score=37.36 Aligned_cols=75 Identities=17% Similarity=0.081 Sum_probs=50.5
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c-
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V- 458 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--I- 458 (774)
..++|.|++. .|..++++|... +..|++.+++++.++...... .++.++.+|.++++.++++- +
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAAL------GARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHHHHHHHH
Confidence 4789999865 577788888752 467888888887766554322 13677889999988865421 1
Q ss_pred ---ccccEEEEecC
Q 004087 459 ---SKARAIIVLAS 469 (774)
Q Consensus 459 ---~~A~aVIiltd 469 (774)
...|.+|-.+.
T Consensus 74 ~~~~~id~li~~ag 87 (273)
T PRK07825 74 ADLGPIDVLVNNAG 87 (273)
T ss_pred HHcCCCCEEEECCC
Confidence 23466666554
No 381
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=65.66 E-value=25 Score=36.82 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=50.8
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...++|.|.+. .|..++++|.+. +..|++++++.+.++...+. .+.++.++.+|.++++.++++-
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSAAGLQELEAA-----HGDAVVGVEGDVRSLDDHKEAVARC 73 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHhh-----cCCceEEEEeccCCHHHHHHHHHHH
Confidence 35778888765 578889998753 47788888887666554321 1335778889999887665431
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
..+-|.+|-++.
T Consensus 74 ~~~~g~id~li~~Ag 88 (262)
T TIGR03325 74 VAAFGKIDCLIPNAG 88 (262)
T ss_pred HHHhCCCCEEEECCC
Confidence 123466666653
No 382
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=65.62 E-value=10 Score=47.94 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=30.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
..++|+|+|+|.-|...|..|.+ .|.+|+|+|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar---~G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV---EGFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH---CCCeEEEEeeC
Confidence 36799999999999999999986 49999999964
No 383
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=65.57 E-value=39 Score=34.47 Aligned_cols=78 Identities=21% Similarity=0.158 Sum_probs=53.7
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
..+++|.|... .+..++++|.+. +..|++..++++.++...... +.++.++.+|.++.+.++++-
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQ------GAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKA 74 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 45889998755 577788988753 357777777776666543321 235778889999998887651
Q ss_pred ---cccccEEEEecCC
Q 004087 458 ---VSKARAIIVLASD 470 (774)
Q Consensus 458 ---I~~A~aVIiltdd 470 (774)
....|.+|-++..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 75 EADLEGVDILVNNAGI 90 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356788777653
No 384
>PRK05717 oxidoreductase; Validated
Probab=65.51 E-value=18 Score=37.73 Aligned_cols=79 Identities=15% Similarity=0.026 Sum_probs=53.2
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-- 717 (774)
..+.++|.|+ |.+|..+++.|.+ .|.+|.+++..+ ++...+.+ .+. ..+.++.+|.+|.+.++++
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~---~g~~v~~~~~~~--~~~~~~~~------~~~-~~~~~~~~Dl~~~~~~~~~~~ 76 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIA---EGWQVVLADLDR--ERGSKVAK------ALG-ENAWFIAMDVADEAQVAAGVA 76 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHH---cCCEEEEEcCCH--HHHHHHHH------HcC-CceEEEEccCCCHHHHHHHHH
Confidence 3468999998 6789999999976 489999987543 33333332 111 1245689999998866431
Q ss_pred ----CCCCccEEEEeeCC
Q 004087 718 ----PLETFDSILILADE 731 (774)
Q Consensus 718 ----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+.-
T Consensus 77 ~~~~~~g~id~li~~ag~ 94 (255)
T PRK05717 77 EVLGQFGRLDALVCNAAI 94 (255)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 12357988888763
No 385
>PRK08263 short chain dehydrogenase; Provisional
Probab=65.51 E-value=51 Score=34.73 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=52.2
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
+.|+|.|+ |.+|..+++.|.+ .|..|.++...+ +..+.+.+ .+.+ .+..+++|.+|++.+++.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~---~g~~V~~~~r~~--~~~~~~~~------~~~~-~~~~~~~D~~~~~~~~~~~~~~ 71 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALE---RGDRVVATARDT--ATLADLAE------KYGD-RLLPLALDVTDRAAVFAAVETA 71 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHH------hccC-CeeEEEccCCCHHHHHHHHHHH
Confidence 46899987 6689999999965 489999888643 33333333 1111 244679999998877542
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 72 ~~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 72 VEHFGRLDIVVNNAGY 87 (275)
T ss_pred HHHcCCCCEEEECCCC
Confidence 23467988888764
No 386
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=65.20 E-value=13 Score=42.40 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEec
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNE 676 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~ 676 (774)
.+++|+|+|+|.+|..++..|.+. |.+|++++.
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~---g~~Vtli~~ 188 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKL---GSKVTVLDA 188 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc---CCeEEEEec
Confidence 356899999999999999999764 999999985
No 387
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.19 E-value=28 Score=35.76 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=51.8
Q ss_pred cCeEEEEcc-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004087 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (774)
Q Consensus 382 k~HIII~G~-g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA---- 456 (774)
...++|.|. |..+..+++.|.+. +..|++++.+++.++...++... .+.++.++++|.++++.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLNQEKLEEAVAECGA--LGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 457899998 55688888888752 45788888887666554433211 134577788898887776532
Q ss_pred --CcccccEEEEecC
Q 004087 457 --SVSKARAIIVLAS 469 (774)
Q Consensus 457 --gI~~A~aVIiltd 469 (774)
.....|.||-++.
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 1124577776654
No 388
>PRK05693 short chain dehydrogenase; Provisional
Probab=65.14 E-value=40 Score=35.47 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
+.++|.|+ |.+|..+++.|.+. |.+|.++..++ ++.+.+.+ ..+.++.+|.+|.+.+++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~---G~~V~~~~r~~--~~~~~~~~----------~~~~~~~~Dl~~~~~~~~~~~~~ 66 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAA---GYEVWATARKA--EDVEALAA----------AGFTAVQLDVNDGAALARLAEEL 66 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH----------CCCeEEEeeCCCHHHHHHHHHHH
Q ss_pred --CCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHH
Q 004087 718 --PLETFDSILILADESLEDSIVHSDSRSLATLLLIR 752 (774)
Q Consensus 718 --~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r 752 (774)
.....|.+|-.++.....+..+.+...+-..+-..
T Consensus 67 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N 103 (274)
T PRK05693 67 EAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETN 103 (274)
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHH
No 389
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=65.01 E-value=26 Score=38.41 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=60.1
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCe-EEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC-C
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSE-LWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL-E 720 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~-v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I-~ 720 (774)
+|+|.|+ |-+|..+++.|.+. |.. +..++........+.+...+ ++..+.+++||.+|.+.++++-- .
T Consensus 2 kilITGgtG~iG~~l~~~L~~~---g~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~~ 72 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINN---TQDSVVNVDKLTYAGNLESLADVS------DSERYVFEHADICDRAELDRIFAQH 72 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHh---CCCeEEEecCCCccchHHHHHhcc------cCCceEEEEecCCCHHHHHHHHHhc
Confidence 6899998 88999999999763 644 44444211111111222110 12234568999999988765321 2
Q ss_pred CccEEEEeeCCC-----CcCCcCCCcHHHHHHHHHHHHHhh
Q 004087 721 TFDSILILADES-----LEDSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 721 ~aD~vIiLtdd~-----~~~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
..|.||-++... .....+.-+.+...+..+++-..+
T Consensus 73 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~ 113 (352)
T PRK10084 73 QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113 (352)
T ss_pred CCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHH
Confidence 579888887632 111234455556666666665543
No 390
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=65.01 E-value=9.6 Score=48.35 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=30.9
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
...++|+|+|+|..|...|..|.+. |.+|+|++..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~---G~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA---GHPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc---CCeEEEEecc
Confidence 4567999999999999999999874 9999999964
No 391
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=64.83 E-value=29 Score=38.22 Aligned_cols=102 Identities=15% Similarity=0.010 Sum_probs=56.4
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChh--HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~--er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
+...+|.|+|.|.+|..++-.|... +--.++.+++.+.+. .....+.+.- + -+.++. +.++ +.+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~~~~~g~~~Dl~~~~--~-~~~~~~---i~~~--~~~~---- 70 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINKEKAEGDAMDLSHAV--P-FTSPTK---IYAG--DYSD---- 70 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCCchhHHHHHHHHhhc--c-ccCCeE---EEeC--CHHH----
Confidence 4456999999999999999988642 223489999974322 1222233211 0 112322 2332 2222
Q ss_pred CCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhh
Q 004087 718 PLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 718 ~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
+.++|.+|++++... .+.+.++.-.-...-+++++.+
T Consensus 71 -~~~adivIitag~~~-k~g~~R~dll~~N~~i~~~i~~ 107 (315)
T PRK00066 71 -CKDADLVVITAGAPQ-KPGETRLDLVEKNLKIFKSIVG 107 (315)
T ss_pred -hCCCCEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 568888888877532 1233444444444555555544
No 392
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.72 E-value=15 Score=38.53 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=52.7
Q ss_pred CceEEEEcc---cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-
Q 004087 642 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (774)
Q Consensus 642 ~~rILI~Gw---g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~- 717 (774)
.+.++|.|+ +.+|..+++.|.+ .|..|.+......++..+.+.+ .+.. .+..+..|.+|++..++.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~---~G~~v~l~~r~~~~~~~~~~~~------~~~~-~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQE---QGAEVVLTGFGRALRLTERIAK------RLPE-PAPVLELDVTNEEHLASLA 76 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHH---CCCEEEEecCccchhHHHHHHH------hcCC-CCcEEeCCCCCHHHHHHHH
Confidence 358999996 6889999999976 4999988864332333344443 1221 233578999999876532
Q ss_pred -----CCCCccEEEEeeC
Q 004087 718 -----PLETFDSILILAD 730 (774)
Q Consensus 718 -----~I~~aD~vIiLtd 730 (774)
.....|.+|.-++
T Consensus 77 ~~~~~~~g~iD~li~nAG 94 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIG 94 (256)
T ss_pred HHHHHHcCCCcEEEEccc
Confidence 2357888887664
No 393
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=64.65 E-value=17 Score=40.35 Aligned_cols=107 Identities=10% Similarity=0.113 Sum_probs=57.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHh--c--CCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAF--L--APGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~--l--~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~ 716 (774)
+-+|+|+|. |.+|..++..|... . ..+.++.+++..+.++..+-. .+| +.+..- ...+|..+...+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~---~~D---l~d~~~-~~~~~~~~~~~~~- 73 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGV---VME---LQDCAF-PLLKSVVATTDPE- 73 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccce---eee---hhhccc-cccCCceecCCHH-
Confidence 347999999 99999999988641 1 135689999875422211110 011 111100 0122322222221
Q ss_pred CCCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 717 LPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 717 ~~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
+.+..+|.||++++.... ..+.++...-....+++++.++
T Consensus 74 ~~l~~aDiVI~tAG~~~~-~~~~R~~l~~~N~~i~~~i~~~ 113 (325)
T cd01336 74 EAFKDVDVAILVGAMPRK-EGMERKDLLKANVKIFKEQGEA 113 (325)
T ss_pred HHhCCCCEEEEeCCcCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 224589999999875421 2233344444556666776654
No 394
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=64.62 E-value=13 Score=40.18 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=33.2
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhc
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~ 688 (774)
.-||-|+|.|++|..+++.|.+. .++.++..+.. ++.++++.+++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~d-r~~~~a~~~a~ 50 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAV-RDPQRHADFIW 50 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEEC-CCHHHHHHHHH
Confidence 35899999999999999999752 25778775543 34577777665
No 395
>PRK09135 pteridine reductase; Provisional
Probab=64.59 E-value=34 Score=34.99 Aligned_cols=82 Identities=17% Similarity=0.142 Sum_probs=52.5
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
++++|.|+ |.+|..+++.|.+ .|.+|.++.... ++..+.+.+ .+ .......+.++.+|.+|++.+.++
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~---~g~~v~~~~r~~-~~~~~~~~~-~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 79 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHA---AGYRVAIHYHRS-AAEADALAA-EL--NALRPGSAAALQADLLDPDALPELVAAC 79 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHH-HH--HhhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 67999998 6789999999986 499999987542 222222221 00 011112245689999998877542
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.++-.+..
T Consensus 80 ~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 80 VAAFGRLDALVNNASS 95 (249)
T ss_pred HHHcCCCCEEEECCCC
Confidence 13457888887763
No 396
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=64.54 E-value=21 Score=43.33 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=54.4
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-CC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 719 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-~I 719 (774)
.++|||.|+ |-+|..+++.|.+. .+|.+|..++..+..+....+... ...++ +.++.||.+|.+.+.++ ..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~-g~~~~V~~~d~~~~~~~~~~l~~~----~~~~~--v~~~~~Dl~d~~~~~~~~~~ 78 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRN-YPDYKIVVLDKLDYCSNLKNLNPS----KSSPN--FKFVKGDIASADLVNYLLIT 78 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHh-CCCCEEEEEeCCCccchhhhhhhc----ccCCC--eEEEECCCCChHHHHHHHhh
Confidence 468999997 88999999999753 236788877643211111222110 01123 45789999999887753 34
Q ss_pred CCccEEEEeeCC
Q 004087 720 ETFDSILILADE 731 (774)
Q Consensus 720 ~~aD~vIiLtdd 731 (774)
..+|.||=++..
T Consensus 79 ~~~D~ViHlAa~ 90 (668)
T PLN02260 79 EGIDTIMHFAAQ 90 (668)
T ss_pred cCCCEEEECCCc
Confidence 678999988764
No 397
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.49 E-value=52 Score=34.19 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=50.7
Q ss_pred ceEEEEccc---ccHHHHHHHHHHhcCCCCeEEEEecCCh---------hHHHHHhhcCCCCcCCCCCceEEEEecCccc
Q 004087 643 EKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEVPE---------KEREKKLTDGGLDISGLMNIKLVHREGNAVI 710 (774)
Q Consensus 643 ~rILI~Gwg---~~g~~l~~~L~~~l~~Gs~v~II~~~p~---------~er~~~l~~~g~~~~~l~~i~V~~i~GD~td 710 (774)
+.++|.|++ .+|..+++.|.+ .|.+|.++...+. ++....+.+ .+ ... +..+..+..|.++
T Consensus 6 k~vlItGas~~~giG~~la~~l~~---~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~D~~~ 78 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAA---KGIDIFFTYWSPYDKTMPWGMHDKEPVLLKE-EI--ESY-GVRCEHMEIDLSQ 78 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHH---cCCcEEEEcCCccccccccccchhhHHHHHH-HH--Hhc-CCeEEEEECCCCC
Confidence 579999996 599999999976 3889988865411 111111221 00 011 1235678999999
Q ss_pred Hhhhhc------CCCCCccEEEEeeC
Q 004087 711 RRHLES------LPLETFDSILILAD 730 (774)
Q Consensus 711 ~~~L~~------~~I~~aD~vIiLtd 730 (774)
++.+++ ......|.+|-.+.
T Consensus 79 ~~~~~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 79 PYAPNRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 887643 12246788887765
No 398
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=64.48 E-value=20 Score=38.62 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=33.0
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG 690 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g 690 (774)
+|.|+|.|.+|..++..|.+. |.+|++++. +++.+.+.+.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~---g~~V~~~~r---~~~~~~~~~~g 42 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA---GRDVTFLVR---PKRAKALRERG 42 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC---CCceEEEec---HHHHHHHHhCC
Confidence 699999999999999999863 889999985 35566666544
No 399
>PRK07478 short chain dehydrogenase; Provisional
Probab=64.47 E-value=29 Score=35.99 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=52.7
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
..++|.|.+. .+..++++|.+. +..|++..++++..+...++... .+.++.++.+|.++++.++++-
T Consensus 7 k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQAELDQLVAEIRA--EGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4788888765 578889998753 46788888887776655443211 1345778889999988776541
Q ss_pred --cccccEEEEecC
Q 004087 458 --VSKARAIIVLAS 469 (774)
Q Consensus 458 --I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 79 ~~~~~id~li~~ag 92 (254)
T PRK07478 79 ERFGGLDIAFNNAG 92 (254)
T ss_pred HhcCCCCEEEECCC
Confidence 124567776664
No 400
>PRK06940 short chain dehydrogenase; Provisional
Probab=64.41 E-value=11 Score=40.04 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=61.1
Q ss_pred ceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-----
Q 004087 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 717 (774)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~----- 717 (774)
+.++|-|.|.+|..+++.|. .|.+|.+++.++ +..+.+.+. + .. .+..+..+.+|.+|++.++++
T Consensus 3 k~~lItGa~gIG~~la~~l~----~G~~Vv~~~r~~--~~~~~~~~~-l--~~-~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGAGGIGQAIARRVG----AGKKVLLADYNE--ENLEAAAKT-L--RE-AGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECCChHHHHHHHHHh----CCCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 56788888899999999984 389999998643 333322210 0 00 123455789999998876532
Q ss_pred CCCCccEEEEeeCCCCc--CCcCCCcHHHHHHHHHHHHHhh
Q 004087 718 PLETFDSILILADESLE--DSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 718 ~I~~aD~vIiLtdd~~~--~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
.....|.+|-.++-... +....-+.+.+.++.+++.+.+
T Consensus 73 ~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 113 (275)
T PRK06940 73 TLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGK 113 (275)
T ss_pred hcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHH
Confidence 12457888887763210 0111223444555555555544
No 401
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=64.35 E-value=19 Score=42.57 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhh-hhhh-------ccC--CCHHHHHHHHHHHhhccCC--CCC-CCCccCceeeehhhHhH-HHHHH
Q 004087 290 ALLFATIFLIIFGGL-ALYA-------VSD--SSFAEALWLSWTFVADSGN--HAD-RVGTGPRIVSVSISSGG-MLIFA 355 (774)
Q Consensus 290 ~Ll~~~l~lil~g~~-~~~~-------ie~--~s~~dAly~~~~TltTvGy--gd~-~~t~~gRi~~v~lil~G-l~ifa 355 (774)
.++++..+++++++. .+.. .|+ .+|.+.+|-+...+.|+|. |.. +.+..+++...++|+.| ++.+.
T Consensus 418 ~vilv~~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit 497 (559)
T PRK05482 418 LAILVHPLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPII 497 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566653 3323 332 6899999999999999986 334 46788999988888877 44444
Q ss_pred HHHH
Q 004087 356 MMLG 359 (774)
Q Consensus 356 ~lig 359 (774)
..++
T Consensus 498 ~~lA 501 (559)
T PRK05482 498 PVLA 501 (559)
T ss_pred HHHH
Confidence 4444
No 402
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=64.32 E-value=11 Score=46.61 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=30.6
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
...++|+|+|+|..|...+..|.+. |.+|+|++..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~---G~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR---GYDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC---CCeEEEEecC
Confidence 4567999999999999999999874 9999999963
No 403
>PLN02366 spermidine synthase
Probab=64.25 E-value=68 Score=35.34 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=52.3
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh---cccCCccEEEEEeCCCCHHHHhccC
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~---~~~~~~~V~~I~Gd~t~~e~L~rAg 457 (774)
...+|+|+|.|. +.+++++.... ....|+++|.|++.++...+.+. ..+.+.++.++.||+... |++..
T Consensus 91 ~pkrVLiIGgG~--G~~~rellk~~----~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~--l~~~~ 162 (308)
T PLN02366 91 NPKKVLVVGGGD--GGVLREIARHS----SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF--LKNAP 162 (308)
T ss_pred CCCeEEEEcCCc--cHHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH--Hhhcc
Confidence 357899999996 44667776431 23578899999976664432111 113456799999997542 33332
Q ss_pred cccccEEEEecCC
Q 004087 458 VSKARAIIVLASD 470 (774)
Q Consensus 458 I~~A~aVIiltdd 470 (774)
-++-|.||+...+
T Consensus 163 ~~~yDvIi~D~~d 175 (308)
T PLN02366 163 EGTYDAIIVDSSD 175 (308)
T ss_pred CCCCCEEEEcCCC
Confidence 2468999986654
No 404
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=64.22 E-value=27 Score=37.78 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=50.8
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
...|+|.|... .+..++++|... ++.|+++.++.+..+.........-...++.++.||.++++.+.++ ++.
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~ 77 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR------GYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA-IEG 77 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH-HhC
Confidence 35789999754 578899999763 3566655444332221111000000123578899999999988776 346
Q ss_pred ccEEEEecCC
Q 004087 461 ARAIIVLASD 470 (774)
Q Consensus 461 A~aVIiltdd 470 (774)
+|.||-++..
T Consensus 78 ~d~vih~A~~ 87 (322)
T PLN02986 78 CDAVFHTASP 87 (322)
T ss_pred CCEEEEeCCC
Confidence 8999988864
No 405
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=64.21 E-value=17 Score=37.40 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=51.1
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
+.++|.|+ |.+|..+++.|.+. |..+.++.......+.+.+.+. .-.+..+..+.+|.+|.+.++++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~---G~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKD---GFKVVAGCGPNSPRRVKWLEDQ-----KALGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHc---CCEEEEEcCCChHHHHHHHHHH-----HhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 56899997 67899999999764 8888775432222222222220 00123455689999999877653
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 76 ~~~~~~id~li~~ag~ 91 (246)
T PRK12938 76 KAEVGEIDVLVNNAGI 91 (246)
T ss_pred HHHhCCCCEEEECCCC
Confidence 12467888877653
No 406
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=64.18 E-value=11 Score=37.72 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChh
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK 680 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~ 680 (774)
-..++|.|+|.|++|..+++.|..+ |.+|...+..+..
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~~~ 71 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSPKP 71 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSCHH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC---CceeEEecccCCh
Confidence 3567999999999999999999976 9999999986543
No 407
>PRK06057 short chain dehydrogenase; Provisional
Probab=64.16 E-value=15 Score=38.20 Aligned_cols=76 Identities=14% Similarity=0.014 Sum_probs=51.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++|+|.|+ |.+|..+++.|.+. |.+|.++..++ ++.+.+.+ .+.. .++.+|.+|++.+++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~---G~~v~~~~r~~--~~~~~~~~------~~~~---~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAE---GATVVVGDIDP--EAGKAAAD------EVGG---LFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHH------HcCC---cEEEeeCCCHHHHHHHHHH
Confidence 468999999 67899999999763 99999997643 33333332 1222 2478999998866531
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 73 ~~~~~~~id~vi~~ag~ 89 (255)
T PRK06057 73 AAETYGSVDIAFNNAGI 89 (255)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 12467888887753
No 408
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=64.15 E-value=18 Score=38.53 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=49.3
Q ss_pred eEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCCh--HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004087 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (774)
Q Consensus 384 HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~--e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~ 460 (774)
+|+|.|.+ -.|..++++|...+ ....|++++... ...+. ++... ...++.++.||.++++.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~----~~~~v~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~~~ 71 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH----PDAEVIVLDKLTYAGNLEN-LADLE---DNPRYRFVKGDIGDRELVSRL-FTE 71 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC----CCCEEEEecCCCcchhhhh-hhhhc---cCCCcEEEEcCCcCHHHHHHH-Hhh
Confidence 48899985 46888999997642 124566666421 11111 11110 123578899999999998876 333
Q ss_pred --ccEEEEecCC
Q 004087 461 --ARAIIVLASD 470 (774)
Q Consensus 461 --A~aVIiltdd 470 (774)
+|.||-++..
T Consensus 72 ~~~d~vi~~a~~ 83 (317)
T TIGR01181 72 HQPDAVVHFAAE 83 (317)
T ss_pred cCCCEEEEcccc
Confidence 8999988854
No 409
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.12 E-value=17 Score=38.11 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=51.5
Q ss_pred CceEEEEccc---ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc--
Q 004087 642 PEKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES-- 716 (774)
Q Consensus 642 ~~rILI~Gwg---~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~-- 716 (774)
.+.++|.|++ .+|..+++.|.+ .|..|.+...+ ++..+.+.+ +..-.+..+..|.+|++..++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~---~G~~Vi~~~r~--~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKD---QGATVIYTYQN--DRMKKSLQK-------LVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHH---CCCEEEEecCc--hHHHHHHHh-------hccCceeEEeCCCCCHHHHHHHH
Confidence 4689999985 799999999976 49999888653 222222332 111234568999999886653
Q ss_pred ----CCCCCccEEEEeeC
Q 004087 717 ----LPLETFDSILILAD 730 (774)
Q Consensus 717 ----~~I~~aD~vIiLtd 730 (774)
......|.+|--++
T Consensus 75 ~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHHHhCCCCEEEEccc
Confidence 12356788877654
No 410
>PRK12827 short chain dehydrogenase; Provisional
Probab=64.07 E-value=48 Score=33.84 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=52.1
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecC--ChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC-
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEV--PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 718 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~--p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~- 718 (774)
++++|.|+ |.+|..+++.|.+ .|.++.++... ..++..+.+.+. +. . .+..+.++.+|.+|.+.+++.-
T Consensus 7 ~~ilItGasg~iG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~Dl~~~~~~~~~~~ 79 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAA---DGADVIVLDIHPMRGRAEADAVAAG-IE--A-AGGKALGLAFDVRDFAATRAALD 79 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCeEEEEcCcccccHHHHHHHHHH-HH--h-cCCcEEEEEccCCCHHHHHHHHH
Confidence 57999997 5689999999986 48999887642 122222222210 00 0 1123456899999998876531
Q ss_pred -----CCCccEEEEeeCC
Q 004087 719 -----LETFDSILILADE 731 (774)
Q Consensus 719 -----I~~aD~vIiLtdd 731 (774)
....|.+|-.+..
T Consensus 80 ~~~~~~~~~d~vi~~ag~ 97 (249)
T PRK12827 80 AGVEEFGRLDILVNNAGI 97 (249)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2467888887753
No 411
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=64.05 E-value=75 Score=34.56 Aligned_cols=123 Identities=15% Similarity=0.265 Sum_probs=68.8
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
..+++|+|+|..+..+++.|... +..|++.+++++..+...+ .+.. +...++|.+. +.++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~~~~~~~--------~g~~-----~~~~~~l~~~-l~~a 210 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSADLARITE--------MGLI-----PFPLNKLEEK-VAEI 210 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHH--------CCCe-----eecHHHHHHH-hccC
Confidence 35899999999999999988753 3578888988766544321 1111 1223445443 5689
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEe-cCCCC--HHHHHHcCCCeeEE-----eccHHHHHHHHH
Q 004087 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM-SDLDN--EPLVKLVGGELIET-----VVAHDVIGRLMI 533 (774)
Q Consensus 462 ~aVIiltdd~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv-~d~e~--~~~l~~~Gad~Vev-----V~~~el~a~lLa 533 (774)
|.||..++. . +...-.+..+.++ .++.-+ .+|.. -+..++.|+..+-+ .+.+...+++++
T Consensus 211 DiVint~P~------~---ii~~~~l~~~k~~---aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~ 278 (287)
T TIGR02853 211 DIVINTIPA------L---VLTADVLSKLPKH---AVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILA 278 (287)
T ss_pred CEEEECCCh------H---HhCHHHHhcCCCC---eEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHH
Confidence 999998853 1 1111122334332 244433 33322 25677788765200 122455666666
Q ss_pred HHH
Q 004087 534 QCA 536 (774)
Q Consensus 534 q~~ 536 (774)
+.+
T Consensus 279 ~~~ 281 (287)
T TIGR02853 279 NVL 281 (287)
T ss_pred HHH
Confidence 654
No 412
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=63.98 E-value=49 Score=36.47 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=57.1
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhH--HHHHhhcCCCCcCCCCC-ceEEEEecCcccHhhhhcCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKE--REKKLTDGGLDISGLMN-IKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~e--r~~~l~~~g~~~~~l~~-i~V~~i~GD~td~~~L~~~~ 718 (774)
..+|.|+|.|.+|..++-.|... .-..++.+++.+++.- ....|.+.. .+.+ ..| +..||. + .
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~-~~~~el~LiD~~~~~~~g~a~Dl~~~~----~~~~~~~v-~~~~dy---~-----~ 68 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK-GLADELVLVDVVEDKLKGEAMDLQHGS----AFLKNPKI-EADKDY---S-----V 68 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCccHHHHHHHHHHHhh----ccCCCCEE-EECCCH---H-----H
Confidence 45899999999999999887642 4467899999754322 222233311 1111 122 122443 2 2
Q ss_pred CCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 719 LETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 719 I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
+.++|.+|+.++...- +.+.++.-.-...-++|++.++
T Consensus 69 ~~~adivvitaG~~~k-~g~~R~dll~~N~~i~~~~~~~ 106 (312)
T cd05293 69 TANSKVVIVTAGARQN-EGESRLDLVQRNVDIFKGIIPK 106 (312)
T ss_pred hCCCCEEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 6778888887764321 2334444444455556655554
No 413
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=63.79 E-value=17 Score=42.31 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=30.4
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
.-++++|+|+|++|..+++.|..+ |.+|++.+.+|
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~---Ga~ViV~e~dp 287 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGF---GARVVVTEIDP 287 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCc
Confidence 457899999999999999999864 88999998765
No 414
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=63.74 E-value=15 Score=38.37 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=52.8
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|++ .+|..+++.|.+ .|.+|.++..+ +++.+.+.+ .+.. .+.++++|.+|.+.++++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~------~~~~-~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLA---EGARVAVLERS--AEKLASLRQ------RFGD-HVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------HhCC-cceEEEccCCCHHHHHHHHHH
Confidence 4689999984 589999999986 49999988864 345555543 1221 234689999998866532
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 74 ~~~~~g~id~li~~ag 89 (263)
T PRK06200 74 TVDAFGKLDCFVGNAG 89 (263)
T ss_pred HHHhcCCCCEEEECCC
Confidence 2346788877665
No 415
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=63.74 E-value=27 Score=44.23 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=31.0
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
...++|+|+|+|.-|...+..|.. .|.+|+++|..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~---~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR---SGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh---CCCeEEEEccc
Confidence 457899999999999999999986 49999999963
No 416
>PRK12828 short chain dehydrogenase; Provisional
Probab=63.62 E-value=26 Score=35.59 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=49.9
Q ss_pred CeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004087 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (774)
Q Consensus 383 ~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI--- 458 (774)
..++|.|.. ..+..++++|.+. +..|++++++++..+....+. ....+.++.+|..+.+.++++--
T Consensus 8 k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAAPLSQTLPGV----PADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChHhHHHHHHHH----hhcCceEEEeecCCHHHHHHHHHHHH
Confidence 468888874 4678888888753 467888888776554443322 12345667789998888765421
Q ss_pred ---ccccEEEEecC
Q 004087 459 ---SKARAIIVLAS 469 (774)
Q Consensus 459 ---~~A~aVIiltd 469 (774)
...|.||-.+.
T Consensus 78 ~~~~~~d~vi~~ag 91 (239)
T PRK12828 78 RQFGRLDALVNIAG 91 (239)
T ss_pred HHhCCcCEEEECCc
Confidence 24677776654
No 417
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=63.58 E-value=32 Score=35.31 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=54.2
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
.+.++|.|.+. .+..++++|.+. +..|++++++.+..+...+... . .+.++.++.+|.++++.++++-
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE------GAKVAVFDLNREAAEKVAADIR-A-KGGNAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHHH-h-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 45788998765 578888998763 4678888887766554433221 1 1345888999999998887652
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
....|.+|.++.
T Consensus 75 ~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 75 EQALGPVDVLVNNAG 89 (250)
T ss_pred HHHcCCCCEEEECCC
Confidence 124677887775
No 418
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.52 E-value=17 Score=38.62 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=52.5
Q ss_pred CceEEEEcc---cccHHHHHHHHHHhcCCCCeEEEEecCC-hhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc-
Q 004087 642 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEVP-EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES- 716 (774)
Q Consensus 642 ~~rILI~Gw---g~~g~~l~~~L~~~l~~Gs~v~II~~~p-~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~- 716 (774)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++.... .+++.+.+.+ ++... ..+++|.+|++.+++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~---~G~~V~l~~r~~~~~~~~~~l~~------~~~~~--~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRA---AGAELAFTYQGDALKKRVEPLAA------ELGAF--VAGHCDVTDEASIDAV 78 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHHHH------hcCCc--eEEecCCCCHHHHHHH
Confidence 357999998 4799999999986 499998875321 1344555544 23222 347899999887764
Q ss_pred -----CCCCCccEEEEeeC
Q 004087 717 -----LPLETFDSILILAD 730 (774)
Q Consensus 717 -----~~I~~aD~vIiLtd 730 (774)
......|.+|--++
T Consensus 79 ~~~~~~~~g~iD~lv~nAG 97 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAIG 97 (272)
T ss_pred HHHHHHhcCCCcEEEECCc
Confidence 22356788887654
No 419
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.48 E-value=17 Score=37.64 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=51.3
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~---- 717 (774)
+.++|.|+ |.+|..+++.|.+ .|.+|.++...+.+...+...+.. . .+..+..+.+|.+|++.+.++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~---~g~~vi~~~r~~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAA---AGFDLAINDRPDDEELAATQQELR----A-LGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHH---CCCEEEEEecCchhHHHHHHHHHH----h-cCCceEEEEecCCCHHHHHHHHHHH
Confidence 56888888 5689999999986 489998887543222112111100 0 112345689999998876431
Q ss_pred --CCCCccEEEEeeCC
Q 004087 718 --PLETFDSILILADE 731 (774)
Q Consensus 718 --~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 75 QAAWGRIDCLVNNAGV 90 (256)
T ss_pred HHhcCCCCEEEECCcc
Confidence 12467988888753
No 420
>PRK05875 short chain dehydrogenase; Provisional
Probab=63.45 E-value=13 Score=39.16 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=52.3
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCC-CceEEEEecCcccHhhhhcC--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~-~i~V~~i~GD~td~~~L~~~-- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + .... ...+..+.+|.+|++.++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-l--~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVA---AGAAVMIVGRNP--DKLAAAAEE-I--EALKGAGAVRYEPADVTDEDQVARAVD 78 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHH-H--HhccCCCceEEEEcCCCCHHHHHHHHH
Confidence 468999998 6899999999976 489999988643 222222210 0 0010 12345678999998866542
Q ss_pred ----CCCCccEEEEeeC
Q 004087 718 ----PLETFDSILILAD 730 (774)
Q Consensus 718 ----~I~~aD~vIiLtd 730 (774)
.....|.+|-.+.
T Consensus 79 ~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 79 AATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1236799988875
No 421
>PRK07201 short chain dehydrogenase; Provisional
Probab=63.38 E-value=31 Score=41.39 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=52.7
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccH------hhhhc
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIR------RHLES 716 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~------~~L~~ 716 (774)
+|+|.|+ |-+|..+++.|.+. ..|.+|+++...+..++.+.+.. .+....+..+.||.+|. +.+++
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~-~~g~~V~~l~R~~~~~~~~~~~~------~~~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDR-RREATVHVLVRRQSLSRLEALAA------YWGADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhc-CCCCEEEEEECcchHHHHHHHHH------hcCCCcEEEEecccCCccCCcCHHHHHH
Confidence 6999998 78999999999731 35889999987544444333322 11111345689999984 45555
Q ss_pred CCCCCccEEEEeeC
Q 004087 717 LPLETFDSILILAD 730 (774)
Q Consensus 717 ~~I~~aD~vIiLtd 730 (774)
+ ..+|.||=++.
T Consensus 75 l--~~~D~Vih~Aa 86 (657)
T PRK07201 75 L--GDIDHVVHLAA 86 (657)
T ss_pred h--cCCCEEEECce
Confidence 5 78999987764
No 422
>PLN02583 cinnamoyl-CoA reductase
Probab=63.35 E-value=35 Score=36.72 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=49.9
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d--~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI 458 (774)
+.+++|.|.+. .|..++++|... |+.|+++.++ +...+..+.... ..+.++.++.||.++.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~------G~~V~~~~R~~~~~~~~~~~~~l~--~~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSR------GYTVHAAVQKNGETEIEKEIRGLS--CEEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEEcCchhhhHHHHHHhcc--cCCCceEEEEecCCCHHHHHHH-H
Confidence 45899999865 578899999763 4677766553 222222222110 0123578899999999998765 4
Q ss_pred ccccEEEEec
Q 004087 459 SKARAIIVLA 468 (774)
Q Consensus 459 ~~A~aVIilt 468 (774)
..+++|+-+.
T Consensus 77 ~~~d~v~~~~ 86 (297)
T PLN02583 77 KGCSGLFCCF 86 (297)
T ss_pred cCCCEEEEeC
Confidence 5678887544
No 423
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=63.34 E-value=9.6 Score=42.90 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
...+|+|+|+|..|..+|-.|.+. |.+|+|+|..+
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~ 51 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDS---GLRIALIEAQP 51 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcC---CCEEEEEecCC
Confidence 345899999999999999999864 99999999865
No 424
>PRK07814 short chain dehydrogenase; Provisional
Probab=63.33 E-value=32 Score=36.09 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=53.2
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
.+.++|.|.+. .+..+++.|.+. +..|++++++++..+...+.... .+.++.++.+|.++++.++++-
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA------GADVLIAARTESQLDEVAEQIRA--AGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35688888775 577888888752 46788888887766654433211 1345778889999998886531
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
..+.+.+|-++.
T Consensus 82 ~~~~~~id~vi~~Ag 96 (263)
T PRK07814 82 VEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 125577776654
No 425
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=63.31 E-value=15 Score=46.67 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=30.0
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
..++|+|+|+|.-|...|..|.+. |.+|+|+|..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~---G~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA---GHPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEecc
Confidence 457999999999999999999864 9999999964
No 426
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=63.20 E-value=23 Score=39.03 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=51.3
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC-CC
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-LE 720 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~-I~ 720 (774)
++|+|.|+ |-+|..+++.|.+ .|.+|++++..+.. ........+ ..+ .+.++.||.+|.+.+.++- -.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~-~~~~~~~~~-----~~~-~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLE---LGAEVYGYSLDPPT-SPNLFELLN-----LAK-KIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHH---CCCEEEEEeCCCcc-chhHHHHHh-----hcC-CceEEEccCCCHHHHHHHHhhc
Confidence 68999998 6799999999976 48999988754321 111111100 011 2346899999998876531 12
Q ss_pred CccEEEEeeCC
Q 004087 721 TFDSILILADE 731 (774)
Q Consensus 721 ~aD~vIiLtdd 731 (774)
..|.+|-++..
T Consensus 75 ~~d~vih~A~~ 85 (349)
T TIGR02622 75 KPEIVFHLAAQ 85 (349)
T ss_pred CCCEEEECCcc
Confidence 46988888753
No 427
>PRK08177 short chain dehydrogenase; Provisional
Probab=63.06 E-value=17 Score=37.11 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC--
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL-- 719 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I-- 719 (774)
++++|.|+ |.+|..+++.|.+. |.+|.+++..+ +..+.+.+ ...+.+..+|.+|++.++++--
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~---G~~V~~~~r~~--~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~ 67 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER---GWQVTATVRGP--QQDTALQA---------LPGVHIEKLDMNDPASLDQLLQRL 67 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC---CCEEEEEeCCC--cchHHHHh---------ccccceEEcCCCCHHHHHHHHHHh
Q ss_pred --CCccEEEEeeC
Q 004087 720 --ETFDSILILAD 730 (774)
Q Consensus 720 --~~aD~vIiLtd 730 (774)
+..|.++..++
T Consensus 68 ~~~~id~vi~~ag 80 (225)
T PRK08177 68 QGQRFDLLFVNAG 80 (225)
T ss_pred hcCCCCEEEEcCc
No 428
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=63.05 E-value=31 Score=35.59 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=51.6
Q ss_pred eEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C---
Q 004087 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S--- 457 (774)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA--g--- 457 (774)
.++|.|.+. .+..++++|.+. +..|++++++++..+...++.. ..+.++.++.+|.++++.++++ .
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 73 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKD------GFAVAVADLNEETAKETAKEIN--QAGGKAVAYKLDVSDKDQVFSAIDQAAE 73 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 588999754 578889998753 4678888877665554433221 1134578888999998887664 1
Q ss_pred -cccccEEEEecC
Q 004087 458 -VSKARAIIVLAS 469 (774)
Q Consensus 458 -I~~A~aVIiltd 469 (774)
....+.+|-.+.
T Consensus 74 ~~~~id~vi~~ag 86 (254)
T TIGR02415 74 KFGGFDVMVNNAG 86 (254)
T ss_pred HcCCCCEEEECCC
Confidence 124577777664
No 429
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=63.04 E-value=49 Score=33.93 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=52.9
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ +..+.+.+. ... .+..+.++.+|.+|.+.+++.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~~---~~~-~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAE---EGAKVAVFDLNR--EAAEKVAAD---IRA-KGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEecCCH--HHHHHHHHH---HHh-cCCcEEEEEcCCCCHHHHHHHHHH
Confidence 357899997 6789999999976 489999887643 333322210 000 112345689999998877652
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|..+..
T Consensus 74 ~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 13467988888763
No 430
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=62.99 E-value=21 Score=37.05 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=52.6
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh--HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~--er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
..++++|.|+ |.+|..+++.|.+ .|..|.++..++++ +..+.+.+ .+..+..+++|.+|++.+.++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~---~G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~ 78 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAG---AGAHVLVNGRNAATLEAAVAALRA--------AGGAAEALAFDIADEEAVAAA 78 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHh--------cCCceEEEEccCCCHHHHHHH
Confidence 3568999998 5689999999976 49999999875422 11222222 112345789999998877531
Q ss_pred ------CCCCccEEEEeeCC
Q 004087 718 ------PLETFDSILILADE 731 (774)
Q Consensus 718 ------~I~~aD~vIiLtdd 731 (774)
.....|.+|-.+..
T Consensus 79 ~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 79 FARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 23466888877653
No 431
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=62.97 E-value=17 Score=44.21 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=51.8
Q ss_pred cccCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004087 380 IEKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (774)
Q Consensus 380 ~~k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI 458 (774)
...++|+|.|++. .|..++++|... +++.|+.+++++....... ...++.++.||.++.+.+.+.-+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~-----~g~~V~~l~r~~~~~~~~~-------~~~~~~~~~gDl~d~~~~l~~~l 380 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRD-----DNYEVYGLDIGSDAISRFL-------GHPRFHFVEGDISIHSEWIEYHI 380 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhC-----CCcEEEEEeCCchhhhhhc-------CCCceEEEeccccCcHHHHHHHh
Confidence 3567899999755 588899999753 2467888887654322211 12357889999998665433235
Q ss_pred ccccEEEEecC
Q 004087 459 SKARAIIVLAS 469 (774)
Q Consensus 459 ~~A~aVIiltd 469 (774)
+++|.||=++.
T Consensus 381 ~~~D~ViHlAa 391 (660)
T PRK08125 381 KKCDVVLPLVA 391 (660)
T ss_pred cCCCEEEECcc
Confidence 67899996654
No 432
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=62.83 E-value=34 Score=37.20 Aligned_cols=80 Identities=21% Similarity=0.113 Sum_probs=54.0
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
...++|.|.+. .|..++++|... +..|+++.++++..+...++.. ..+.++.++.+|.++.+.++++--
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~------G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKR------GWHVIMACRNLKKAEAAAQELG--IPPDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhh--ccCCceEEEEecCCCHHHHHHHHHHH
Confidence 45788999865 578888998753 4678888888776665544321 113357888999999988766422
Q ss_pred ----ccccEEEEecC
Q 004087 459 ----SKARAIIVLAS 469 (774)
Q Consensus 459 ----~~A~aVIiltd 469 (774)
..-|.+|-.+.
T Consensus 78 ~~~~~~iD~li~nAg 92 (322)
T PRK07453 78 RALGKPLDALVCNAA 92 (322)
T ss_pred HHhCCCccEEEECCc
Confidence 13577776654
No 433
>PRK06139 short chain dehydrogenase; Provisional
Probab=62.78 E-value=35 Score=37.66 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=54.4
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++..++ ++.+.+.+. + .. .+..+.++..|.+|++.++++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~---~G~~Vvl~~R~~--~~l~~~~~~-~--~~-~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFAR---RGARLVLAARDE--EALQAVAEE-C--RA-LGAEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHHH-H--Hh-cCCcEEEEEeeCCCHHHHHHHHHH
Confidence 468999998 5789999999986 499999988643 443333320 0 00 123455688999998877642
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++-
T Consensus 78 ~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 78 AASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 12567988887763
No 434
>PRK06701 short chain dehydrogenase; Provisional
Probab=62.77 E-value=38 Score=36.38 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=52.7
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh---HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK---EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~---er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
.+++||.|+ |.+|..+++.|.+ .|.+|.++...+.+ +....+.. ....+.++.+|.+|++.++++
T Consensus 46 ~k~iLItGasggIG~~la~~l~~---~G~~V~l~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~ 114 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAK---EGADIAIVYLDEHEDANETKQRVEK--------EGVKCLLIPGDVSDEAFCKDA 114 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEeCCcchHHHHHHHHHHh--------cCCeEEEEEccCCCHHHHHHH
Confidence 457999997 5689999999976 49999888754321 22222221 123455789999999877542
Q ss_pred C------CCCccEEEEeeCC
Q 004087 718 P------LETFDSILILADE 731 (774)
Q Consensus 718 ~------I~~aD~vIiLtdd 731 (774)
- ....|.+|-.++.
T Consensus 115 ~~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 115 VEETVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 1 2357888877664
No 435
>PRK07060 short chain dehydrogenase; Provisional
Probab=62.67 E-value=24 Score=36.08 Aligned_cols=76 Identities=17% Similarity=0.036 Sum_probs=51.3
Q ss_pred cCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 004087 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (774)
Q Consensus 382 k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--I 458 (774)
.+.++|.|.+ ..+..+++.|... +..|++++++++..+...+. .+..++.+|.++++.++++- .
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHHHh
Confidence 3578999985 4678888888752 46788888887665544332 13557889999988776642 2
Q ss_pred ccccEEEEecCC
Q 004087 459 SKARAIIVLASD 470 (774)
Q Consensus 459 ~~A~aVIiltdd 470 (774)
...|.+|-.+..
T Consensus 76 ~~~d~vi~~ag~ 87 (245)
T PRK07060 76 GAFDGLVNCAGI 87 (245)
T ss_pred CCCCEEEECCCC
Confidence 346777776653
No 436
>PRK07904 short chain dehydrogenase; Provisional
Probab=62.63 E-value=26 Score=36.71 Aligned_cols=82 Identities=20% Similarity=0.099 Sum_probs=51.3
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHH-HHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~-le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg-- 457 (774)
..+++|.|.+. .|..++++|.+. ++..|++..++++. ++...++... ....++.++.+|.++++..+++-
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~-----gg~~V~~~~r~~~~~~~~~~~~l~~-~~~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKN-----APARVVLAALPDDPRRDAAVAQMKA-AGASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-----CCCeEEEEeCCcchhHHHHHHHHHh-cCCCceEEEEecCCChHHHHHHHHH
Confidence 45799999876 477788888752 23677788777654 5544333211 11236888999999888644320
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
-.+-|.+|..+.
T Consensus 82 ~~~~g~id~li~~ag 96 (253)
T PRK07904 82 AFAGGDVDVAIVAFG 96 (253)
T ss_pred HHhcCCCCEEEEeee
Confidence 125676776553
No 437
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=62.58 E-value=11 Score=38.80 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=33.9
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhc
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~ 688 (774)
..++++|.|.|++|..+++.|.+. |.+|++.+.+ .++.+.+.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~---G~~Vvv~D~~--~~~~~~~~~ 69 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE---GAKLIVADIN--EEAVARAAE 69 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCC--HHHHHHHHH
Confidence 346899999999999999999874 9999988764 355555544
No 438
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=62.52 E-value=80 Score=30.95 Aligned_cols=93 Identities=23% Similarity=0.345 Sum_probs=55.2
Q ss_pred CeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004087 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (774)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~ 462 (774)
.+|=++|.|..+..+++.|... ++.|.+.|.+++.++...+. ++.. ..+++++ ++.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~~~~~~~~~--------g~~~----~~s~~e~----~~~~d 59 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPEKAEALAEA--------GAEV----ADSPAEA----AEQAD 59 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHHHHHHHHHT--------TEEE----ESSHHHH----HHHBS
T ss_pred CEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchhhhhhhHHh--------hhhh----hhhhhhH----hhccc
Confidence 5788999999999999999763 57899999999888876542 2221 1233333 34569
Q ss_pred EEEEecCCCCCCcchHHHHHHHHH---HhhhcCCCCceEEEEecCCC
Q 004087 463 AIIVLASDENADQSDARALRVVLS---LTGVKEGLRGHVVVEMSDLD 506 (774)
Q Consensus 463 aVIiltdd~~~~~sDa~NI~~~La---ar~l~p~~~~~IIArv~d~e 506 (774)
.||.+..+ |...-.++.. +..+.+ ..+++...+..
T Consensus 60 vvi~~v~~------~~~v~~v~~~~~i~~~l~~---g~iiid~sT~~ 97 (163)
T PF03446_consen 60 VVILCVPD------DDAVEAVLFGENILAGLRP---GKIIIDMSTIS 97 (163)
T ss_dssp EEEE-SSS------HHHHHHHHHCTTHGGGS-T---TEEEEE-SS--
T ss_pred ceEeeccc------chhhhhhhhhhHHhhcccc---ceEEEecCCcc
Confidence 99988864 3333333332 333433 35777766543
No 439
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=62.49 E-value=96 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=25.7
Q ss_pred eEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCC
Q 004087 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (774)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d 420 (774)
||+|+|.|..+..+++.|....- ..+.++|.|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCC
Confidence 68999999999999999987532 357777766
No 440
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=62.45 E-value=26 Score=40.21 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=54.4
Q ss_pred cCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 382 k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
..+++|+|+|+.+.-+++.|...+ -..|+++.+..+..+.+..++ + |.+...+.|... +..|
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g-----~~~i~IaNRT~erA~~La~~~-------~-----~~~~~l~el~~~-l~~~ 239 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKG-----VKKITIANRTLERAEELAKKL-------G-----AEAVALEELLEA-LAEA 239 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCC-----CCEEEEEcCCHHHHHHHHHHh-------C-----CeeecHHHHHHh-hhhC
Confidence 568999999999998999998642 368889999998888776543 1 455555665544 7799
Q ss_pred cEEEEecCC
Q 004087 462 RAIIVLASD 470 (774)
Q Consensus 462 ~aVIiltdd 470 (774)
|.||..|..
T Consensus 240 DvVissTsa 248 (414)
T COG0373 240 DVVISSTSA 248 (414)
T ss_pred CEEEEecCC
Confidence 999999876
No 441
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=62.43 E-value=28 Score=36.34 Aligned_cols=71 Identities=23% Similarity=0.180 Sum_probs=45.8
Q ss_pred eEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004087 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
.++|.|.+. .+..++++|.... ...+..|+++.++++.++...++......+.++.++.+|.++++.++++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~--~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~ 73 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCL--KSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQL 73 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhh--ccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHH
Confidence 478888876 4777888887521 0125678888888877766544332111234577888888888876653
No 442
>PRK07856 short chain dehydrogenase; Provisional
Probab=62.37 E-value=39 Score=35.00 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=50.1
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++..++ +. . . .+..+.++++|.+|++.++++
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~---~g~~v~~~~r~~--~~--~--~--------~~~~~~~~~~D~~~~~~~~~~~~~ 68 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLA---AGATVVVCGRRA--PE--T--V--------DGRPAEFHAADVRDPDQVAALVDA 68 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCh--hh--h--h--------cCCceEEEEccCCCHHHHHHHHHH
Confidence 468899998 4689999999976 489999988653 21 1 1 112345689999998876542
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.++
T Consensus 69 ~~~~~~~id~vi~~ag 84 (252)
T PRK07856 69 IVERHGRLDVLVNNAG 84 (252)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246798888765
No 443
>PRK09134 short chain dehydrogenase; Provisional
Probab=62.30 E-value=75 Score=33.00 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=51.9
Q ss_pred CCceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--
Q 004087 641 YPEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 641 ~~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-- 717 (774)
..++++|.|++ .+|..+++.|.+ .|..+.++.... .++.+.+.+. + ...+..+..+.+|.+|.+.++++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~---~g~~v~~~~~~~-~~~~~~~~~~-~---~~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAA---HGFDVAVHYNRS-RDEAEALAAE-I---RALGRRAVALQADLADEAEVRALVA 79 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEeCCC-HHHHHHHHHH-H---HhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 34689999984 679999999976 488887765432 2333222210 0 00123455689999998877542
Q ss_pred ----CCCCccEEEEeeC
Q 004087 718 ----PLETFDSILILAD 730 (774)
Q Consensus 718 ----~I~~aD~vIiLtd 730 (774)
.....|.+|-.+.
T Consensus 80 ~~~~~~~~iD~vi~~ag 96 (258)
T PRK09134 80 RASAALGPITLLVNNAS 96 (258)
T ss_pred HHHHHcCCCCEEEECCc
Confidence 1346798888875
No 444
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=62.20 E-value=10 Score=45.93 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=30.9
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
+..++|+|+|+|..|...+..|.+. |.+|+|++..+
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~---G~~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRK---GHDVTIFDANE 226 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCcEEEEecCC
Confidence 4457999999999999999999864 99999999753
No 445
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=62.15 E-value=24 Score=38.40 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=53.2
Q ss_pred CeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccC----CccEEEEEeCCCCHHHHhccCc
Q 004087 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFM----GTSVICRSGSPLILADLKKVSV 458 (774)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~----~~~V~~I~Gd~t~~e~L~rAgI 458 (774)
.||+|+|.|+ +..++++...+. -..++++|-|++.++-..+ +..... ..++..+.+|+.. -+++..-
T Consensus 78 k~VLiiGgGd--G~tlRevlkh~~----ve~i~~VEID~~Vi~~ar~-~l~~~~~~~~dpRv~i~i~Dg~~--~v~~~~~ 148 (282)
T COG0421 78 KRVLIIGGGD--GGTLREVLKHLP----VERITMVEIDPAVIELARK-YLPEPSGGADDPRVEIIIDDGVE--FLRDCEE 148 (282)
T ss_pred CeEEEECCCc--cHHHHHHHhcCC----cceEEEEEcCHHHHHHHHH-hccCcccccCCCceEEEeccHHH--HHHhCCC
Confidence 4999999997 556677765432 3678999999987775433 222111 4677888888753 3444433
Q ss_pred ccccEEEEecCC
Q 004087 459 SKARAIIVLASD 470 (774)
Q Consensus 459 ~~A~aVIiltdd 470 (774)
+.|.||+.+.+
T Consensus 149 -~fDvIi~D~td 159 (282)
T COG0421 149 -KFDVIIVDSTD 159 (282)
T ss_pred -cCCEEEEcCCC
Confidence 89999998877
No 446
>PRK07041 short chain dehydrogenase; Provisional
Probab=62.12 E-value=42 Score=34.10 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=49.9
Q ss_pred EEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCC-CCceEEEEecCcccHhhhhcC--CCCC
Q 004087 646 LFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL-MNIKLVHREGNAVIRRHLESL--PLET 721 (774)
Q Consensus 646 LI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l-~~i~V~~i~GD~td~~~L~~~--~I~~ 721 (774)
+|.|+ |.+|..+++.|.+ .|..|.++...+ ++.+.+.+ .+ .+..+.++.+|.+|++.++++ .+..
T Consensus 1 lItGas~~iG~~~a~~l~~---~G~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 69 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAA---EGARVTIASRSR--DRLAAAAR------ALGGGAPVRTAALDITDEAAVDAFFAEAGP 69 (230)
T ss_pred CeecCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------HHhcCCceEEEEccCCCHHHHHHHHHhcCC
Confidence 35565 5689999999976 499999888643 34443332 11 122345689999999988652 2456
Q ss_pred ccEEEEeeCC
Q 004087 722 FDSILILADE 731 (774)
Q Consensus 722 aD~vIiLtdd 731 (774)
.|.+|-.++.
T Consensus 70 id~li~~ag~ 79 (230)
T PRK07041 70 FDHVVITAAD 79 (230)
T ss_pred CCEEEECCCC
Confidence 7988888764
No 447
>PLN02253 xanthoxin dehydrogenase
Probab=62.06 E-value=33 Score=36.20 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=52.8
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI-- 458 (774)
...++|.|.+. .+..++++|.+. +..|++++.+++..+...++.. .+.++.++++|.++++.++++--
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~------G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKH------GAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHH
Confidence 34688888765 577788888753 4678888877665554433321 12457889999999988766421
Q ss_pred ----ccccEEEEecC
Q 004087 459 ----SKARAIIVLAS 469 (774)
Q Consensus 459 ----~~A~aVIiltd 469 (774)
.+.|.+|-++.
T Consensus 89 ~~~~g~id~li~~Ag 103 (280)
T PLN02253 89 VDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHhCCCCEEEECCC
Confidence 25677777664
No 448
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=62.04 E-value=15 Score=41.03 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=48.2
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC-CCCCc
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PLETF 722 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-~I~~a 722 (774)
+|+|+|+|..+..+++.+.+. |..+.+++..|+. -+..++ + .++.+|.+|.+.|.+. .-++.
T Consensus 1 kililG~g~~~~~l~~aa~~~---G~~v~~~d~~~~~-~~~~~a----------d---~~~~~~~~d~~~l~~~~~~~~i 63 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL---GVEVIAVDRYANA-PAMQVA----------H---RSYVINMLDGDALRAVIEREKP 63 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCCCC-chhhhC----------c---eEEEcCCCCHHHHHHHHHHhCC
Confidence 699999999999999988764 9999999876532 111122 2 2356788888887653 23367
Q ss_pred cEEEEeeC
Q 004087 723 DSILILAD 730 (774)
Q Consensus 723 D~vIiLtd 730 (774)
|.++...+
T Consensus 64 d~v~~~~e 71 (380)
T TIGR01142 64 DYIVPEIE 71 (380)
T ss_pred CEEEeccC
Confidence 87776543
No 449
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=61.99 E-value=15 Score=42.25 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=29.6
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
.+++++|+|+|.+|..++..|.+. |.+|++++..
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~---g~~Vtli~~~ 180 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYER---GLHPTLIHRS 180 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCcEEEEecc
Confidence 357999999999999999999764 9999999854
No 450
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=61.96 E-value=35 Score=35.39 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=51.9
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
...++|.|.+. .+..++++|.+. +..|++++++++..+...++... .+.++.++.+|.++++.++++-
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~------G~~vvl~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEY------GAEIIINDITAERAELAVAKLRQ--EGIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEecCCCCHHHHHHHHHHH
Confidence 34688888765 578889998752 47888999887666555433211 1234667788888888776541
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
....|.+|-.+.
T Consensus 81 ~~~~~~id~vi~~ag 95 (254)
T PRK08085 81 EKDIGPIDVLINNAG 95 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 123566666654
No 451
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=61.83 E-value=11 Score=44.15 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=29.7
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
..++|+|+|+|..|...+..|.+. |.+|+|++..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~---g~~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA---GHTVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc---CCeEEEEecC
Confidence 346999999999999999999864 8999999864
No 452
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=61.82 E-value=32 Score=35.43 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=51.3
Q ss_pred eEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C---
Q 004087 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S--- 457 (774)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA--g--- 457 (774)
.++|.|.+. .+..++++|.+. +..|++++++++..+....... ..+.++.++.+|..+++.++.+ .
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAA------GANVVVNDLGEAGAEAAAKVAT--DAGGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 588888754 578889998752 4678888888766555443221 1134588899999999865432 1
Q ss_pred -cccccEEEEecC
Q 004087 458 -VSKARAIIVLAS 469 (774)
Q Consensus 458 -I~~A~aVIiltd 469 (774)
....|.||-+..
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 234677776664
No 453
>PRK08264 short chain dehydrogenase; Validated
Probab=61.73 E-value=30 Score=35.35 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=51.6
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCc-eEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~-iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg-- 457 (774)
..+++|.|.+. .+..++++|... +. .|+++.++++..+. .+.++.++.+|..+++.++++-
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~------G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR------GAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHh
Confidence 45789998754 578888888753 34 78888887755432 1346889999999998877642
Q ss_pred cccccEEEEecCC
Q 004087 458 VSKARAIIVLASD 470 (774)
Q Consensus 458 I~~A~aVIiltdd 470 (774)
....|.||-.+..
T Consensus 71 ~~~id~vi~~ag~ 83 (238)
T PRK08264 71 ASDVTILVNNAGI 83 (238)
T ss_pred cCCCCEEEECCCc
Confidence 2346777777654
No 454
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=61.69 E-value=9.8 Score=41.01 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=27.4
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
+|+|+|+|..|..++..|.+. |.+|+|+|..+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~---G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA---GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT---TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc---ccccccchhcc
Confidence 699999999999999999985 99999999865
No 455
>PRK08226 short chain dehydrogenase; Provisional
Probab=61.65 E-value=46 Score=34.63 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=51.4
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh-HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~-er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~-- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++..... +..+.+.+ .+..+..+.+|.++++.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~---~G~~Vv~~~r~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFAR---HGANLILLDISPEIEKLADELCG--------RGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEecCCHHHHHHHHHHHH--------hCCceEEEECCCCCHHHHHHHHH
Confidence 468999997 4689999999976 49999999864321 11122221 123345689999998877542
Q ss_pred ----CCCCccEEEEeeC
Q 004087 718 ----PLETFDSILILAD 730 (774)
Q Consensus 718 ----~I~~aD~vIiLtd 730 (774)
.....|.+|-.+.
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (263)
T PRK08226 75 RAKEKEGRIDILVNNAG 91 (263)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1245688887765
No 456
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=61.57 E-value=42 Score=38.46 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=58.4
Q ss_pred ceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcC--CCCCceEEE-EecCcccHhhhhcCCC
Q 004087 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDIS--GLMNIKLVH-REGNAVIRRHLESLPL 719 (774)
Q Consensus 643 ~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~--~l~~i~V~~-i~GD~td~~~L~~~~I 719 (774)
++|.|+|-|..|.-|+..|.+. |.+|+.++.+ +++.+.+..+..... .++...-.+ -.|...- .-.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~---G~~V~~~D~~--~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~-----~~~~ 73 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR---QKQVIGVDIN--QHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRA-----TTTP 73 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC---CCEEEEEeCC--HHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceee-----eccc
Confidence 5799999999999999999864 9999999864 477777765332110 000000000 0010000 0124
Q ss_pred CCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhh
Q 004087 720 ETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 720 ~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
+.+|.+++....... .....|...+...+ +.+.+
T Consensus 74 ~~aDvvii~vptp~~-~~~~~dl~~v~~~~--~~i~~ 107 (415)
T PRK11064 74 EPADAFLIAVPTPFK-GDHEPDLTYVEAAA--KSIAP 107 (415)
T ss_pred ccCCEEEEEcCCCCC-CCCCcChHHHHHHH--HHHHH
Confidence 578988887765432 22466777666543 44444
No 457
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=61.51 E-value=18 Score=38.83 Aligned_cols=66 Identities=21% Similarity=0.157 Sum_probs=45.5
Q ss_pred eEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004087 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (774)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~a 463 (774)
+|.|+|.|..|..++..|... ++.|.++|.+++.++...+. +... -...+.+ .+++||.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~~~~~~~a~~~--------g~~~--~~~~~~~-----~~~~aDl 60 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRRESTCERAIER--------GLVD--EASTDLS-----LLKDCDL 60 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHC--------CCcc--cccCCHh-----HhcCCCE
Confidence 689999999999999999763 46889999998877765431 1110 0111221 2568999
Q ss_pred EEEecCC
Q 004087 464 IIVLASD 470 (774)
Q Consensus 464 VIiltdd 470 (774)
||++++.
T Consensus 61 Vilavp~ 67 (279)
T PRK07417 61 VILALPI 67 (279)
T ss_pred EEEcCCH
Confidence 9999964
No 458
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=61.34 E-value=21 Score=35.71 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=34.1
Q ss_pred CCCceEEEEccccc-HHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhc
Q 004087 640 KYPEKILFCGWRRD-IDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 640 ~~~~rILI~Gwg~~-g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~ 688 (774)
-..++|+|+|.|+. |..+++.|.+ .|..|++++... +++.+.+.+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~---~g~~V~v~~r~~-~~l~~~l~~ 87 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLN---RNATVTVCHSKT-KNLKEHTKQ 87 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhh---CCCEEEEEECCc-hhHHHHHhh
Confidence 45679999999995 8889999976 488899999753 445555544
No 459
>PRK05876 short chain dehydrogenase; Provisional
Probab=61.29 E-value=61 Score=34.46 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=52.1
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.+.+.+ .+. . .+..+..+..|.+|++.++++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~---~G~~Vv~~~r~~--~~l~~~~~-~l~--~-~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFAR---RGARVVLGDVDK--PGLRQAVN-HLR--A-EGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH-HHH--h-cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 357899987 5689999999976 499988887543 22232221 000 0 123455689999998877542
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++-
T Consensus 77 ~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 77 AFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 23457888887763
No 460
>PLN00106 malate dehydrogenase
Probab=61.28 E-value=48 Score=36.77 Aligned_cols=104 Identities=12% Similarity=-0.015 Sum_probs=58.9
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
...+|.|+|. |.+|..++..|... .-..++.+++.++.+.....|.+. .....+..+.++ +| +. +.+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~el~L~Di~~~~g~a~Dl~~~------~~~~~i~~~~~~-~d---~~-~~l 84 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMN-PLVSELHLYDIANTPGVAADVSHI------NTPAQVRGFLGD-DQ---LG-DAL 84 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-CCCCEEEEEecCCCCeeEchhhhC------CcCceEEEEeCC-CC---HH-HHc
Confidence 3469999999 99999999988631 224589999875411111122221 112222111122 22 22 246
Q ss_pred CCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhh
Q 004087 720 ETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRY 757 (774)
Q Consensus 720 ~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~ 757 (774)
..+|.||++++.... +.+..|...=..+-.++++.++
T Consensus 85 ~~aDiVVitAG~~~~-~g~~R~dll~~N~~i~~~i~~~ 121 (323)
T PLN00106 85 KGADLVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEA 121 (323)
T ss_pred CCCCEEEEeCCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999886432 2344555544555566666654
No 461
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=61.17 E-value=29 Score=31.61 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=45.8
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCcc
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD 723 (774)
||.|+|.|..|...+..+.+. .++.++.-+.+ ++.++.+.+.+ ++ ++. ...|. ++.|+.. +.|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d-~~~~~~~~~~~------~~-~~~---~~~~~--~~ll~~~---~~D 64 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCD-PDPERAEAFAE------KY-GIP---VYTDL--EELLADE---DVD 64 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TTTEEEEEEEC-SSHHHHHHHHH------HT-TSE---EESSH--HHHHHHT---TES
T ss_pred EEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEe-CCHHHHHHHHH------Hh-ccc---chhHH--HHHHHhh---cCC
Confidence 689999999999998888764 35667664443 35577776654 11 222 23332 3445444 689
Q ss_pred EEEEeeCC
Q 004087 724 SILILADE 731 (774)
Q Consensus 724 ~vIiLtdd 731 (774)
.+++.|..
T Consensus 65 ~V~I~tp~ 72 (120)
T PF01408_consen 65 AVIIATPP 72 (120)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 99998864
No 462
>PRK07832 short chain dehydrogenase; Provisional
Probab=61.08 E-value=44 Score=35.16 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred ceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhc-----
Q 004087 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 716 (774)
Q Consensus 643 ~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~----- 716 (774)
++++|.|+ |.+|..+++.|.+. |..|.++..++ +..+.+.+ +........+..+.+|.+|++.+++
T Consensus 1 k~vlItGas~giG~~la~~la~~---G~~vv~~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQ---GAELFLTDRDA--DGLAQTVA---DARALGGTVPEHRALDISDYDAVAAFAADI 72 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH---HHHhcCCCcceEEEeeCCCHHHHHHHHHHH
Q ss_pred -CCCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHH
Q 004087 717 -LPLETFDSILILADESLEDSIVHSDSRSLATLLLIR 752 (774)
Q Consensus 717 -~~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r 752 (774)
......|.+|-.++-....+..+.|...+-..+...
T Consensus 73 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n 109 (272)
T PRK07832 73 HAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVN 109 (272)
T ss_pred HHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHH
No 463
>PRK08628 short chain dehydrogenase; Provisional
Probab=60.97 E-value=47 Score=34.46 Aligned_cols=100 Identities=8% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChh-HHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~-er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~ 718 (774)
..+.++|.|+ |.+|..+++.|.+. |..+.++...+.. +..+.+.+ .+..+..+.+|.++++.++++-
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~ 74 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEE---GAIPVIFGRSAPDDEFAEELRA--------LQPRAEFVQVDLTDDAQCRDAV 74 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHc---CCcEEEEcCChhhHHHHHHHHh--------cCCceEEEEccCCCHHHHHHHH
Q ss_pred CC------CccEEEEeeCCCCcCCcCCCcHHHHHHHHHHH
Q 004087 719 LE------TFDSILILADESLEDSIVHSDSRSLATLLLIR 752 (774)
Q Consensus 719 I~------~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r 752 (774)
-+ ..|.+|-.++.......+..+ ..+-..+...
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~-~~~~~~~~~n 113 (258)
T PRK08628 75 EQTVAKFGRIDGLVNNAGVNDGVGLEAGR-EAFVASLERN 113 (258)
T ss_pred HHHHHhcCCCCEEEECCcccCCCcccCCH-HHHHHHHhhh
No 464
>PLN02686 cinnamoyl-CoA reductase
Probab=60.96 E-value=19 Score=40.28 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=51.6
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCC-C-CcCCCCCceEEEEecCcccHhhhhcC
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-L-DISGLMNIKLVHREGNAVIRRHLESL 717 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g-~-~~~~l~~i~V~~i~GD~td~~~L~~~ 717 (774)
..++|||.|+ |-+|..+++.|.+ .|.+|+++..++ +..+.+.+.. . ..... +-.+.++.||.+|.+.+.++
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~---~G~~V~~~~r~~--~~~~~l~~l~~~~~~~~~-~~~~~~v~~Dl~d~~~l~~~ 125 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLR---HGYSVRIAVDTQ--EDKEKLREMEMFGEMGRS-NDGIWTVMANLTEPESLHEA 125 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHhhhcccccc-CCceEEEEcCCCCHHHHHHH
Confidence 3568999998 7899999999976 499998866432 2222222100 0 00000 11245689999999988764
Q ss_pred CCCCccEEEEee
Q 004087 718 PLETFDSILILA 729 (774)
Q Consensus 718 ~I~~aD~vIiLt 729 (774)
+..+|.++-++
T Consensus 126 -i~~~d~V~hlA 136 (367)
T PLN02686 126 -FDGCAGVFHTS 136 (367)
T ss_pred -HHhccEEEecC
Confidence 45677777554
No 465
>PLN02206 UDP-glucuronate decarboxylase
Probab=60.90 E-value=33 Score=39.68 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=49.5
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCC
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I 719 (774)
...+|+|.|+ |-+|..+++.|.+ .|.+|.+++.... .+.+.+.. .+.+..+.++.||..++..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~---~G~~V~~ld~~~~-~~~~~~~~------~~~~~~~~~i~~D~~~~~l------ 181 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMA---RGDSVIVVDNFFT-GRKENVMH------HFSNPNFELIRHDVVEPIL------ 181 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHH---CcCEEEEEeCCCc-cchhhhhh------hccCCceEEEECCccChhh------
Confidence 3468999998 8899999999976 4899998875321 22222211 1222334568899877643
Q ss_pred CCccEEEEeeC
Q 004087 720 ETFDSILILAD 730 (774)
Q Consensus 720 ~~aD~vIiLtd 730 (774)
..+|.||=++.
T Consensus 182 ~~~D~ViHlAa 192 (442)
T PLN02206 182 LEVDQIYHLAC 192 (442)
T ss_pred cCCCEEEEeee
Confidence 35799988875
No 466
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=60.89 E-value=14 Score=44.60 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
..++|+|+|+|..|...+..|.+. |.+|+|++..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~---G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA---GVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc---CCcEEEEeCCC
Confidence 468999999999999999999864 89999999754
No 467
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=60.82 E-value=13 Score=45.03 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=30.7
Q ss_pred CCCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 640 ~~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
...++|+|+|+|..|...+..|.+. |.+|+|++..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~---G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN---GVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecC
Confidence 3467999999999999999999874 9999999964
No 468
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=60.78 E-value=25 Score=38.92 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=60.8
Q ss_pred CCceEEEEcc-cccHHHHHHHHHHh--c--CCCCeEEEEecCChhH----HHHHhhcCCCCcCCCCCceEEEEecCcccH
Q 004087 641 YPEKILFCGW-RRDIDDMIMVLEAF--L--APGSELWMLNEVPEKE----REKKLTDGGLDISGLMNIKLVHREGNAVIR 711 (774)
Q Consensus 641 ~~~rILI~Gw-g~~g~~l~~~L~~~--l--~~Gs~v~II~~~p~~e----r~~~l~~~g~~~~~l~~i~V~~i~GD~td~ 711 (774)
.+-+|.|+|. |.+|..++-.|... . ....++.+++..++++ ....+.+... + .+.+.. +.+ .+.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~-~-~~~~~~---i~~--~~~ 74 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAF-P-LLAGVV---ATT--DPE 74 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccc-c-ccCCcE---Eec--ChH
Confidence 3558999998 99999998887632 0 0122899998754222 2222222110 0 112222 222 122
Q ss_pred hhhhcCCCCCccEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhhhhc
Q 004087 712 RHLESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQRYKA 759 (774)
Q Consensus 712 ~~L~~~~I~~aD~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~~~~ 759 (774)
+.+.++|.||+.++... .+.+.++.-.-...-+++++.++-.
T Consensus 75 -----~~~~daDvVVitAG~~~-k~g~tR~dll~~Na~i~~~i~~~i~ 116 (323)
T TIGR01759 75 -----EAFKDVDAALLVGAFPR-KPGMERADLLSKNGKIFKEQGKALN 116 (323)
T ss_pred -----HHhCCCCEEEEeCCCCC-CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33677888888887532 2345566666667777777777543
No 469
>PRK08589 short chain dehydrogenase; Validated
Probab=60.75 E-value=36 Score=35.99 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=51.3
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg--- 457 (774)
..+++|.|.+. .+..++++|... +..|++++++ +..+...++... .+.++.++.+|.++++.++++-
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~------G~~vi~~~r~-~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQE------GAYVLAVDIA-EAVSETVDKIKS--NGGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCc-HHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHH
Confidence 35788999865 578888998763 4678888887 555544443211 1335788889999988775431
Q ss_pred ---cccccEEEEecC
Q 004087 458 ---VSKARAIIVLAS 469 (774)
Q Consensus 458 ---I~~A~aVIiltd 469 (774)
...-|.+|-.+.
T Consensus 77 ~~~~g~id~li~~Ag 91 (272)
T PRK08589 77 KEQFGRVDVLFNNAG 91 (272)
T ss_pred HHHcCCcCEEEECCC
Confidence 123566766654
No 470
>PRK00811 spermidine synthase; Provisional
Probab=60.74 E-value=84 Score=34.03 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=52.4
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc----ccCCccEEEEEeCCCCHHHHhcc
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF----DFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~----~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
...+++++|.|. +.+++++.... ....|+++|.|++.++...+.+.. .+...++.++.||+.. -+++
T Consensus 76 ~p~~VL~iG~G~--G~~~~~~l~~~----~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~- 146 (283)
T PRK00811 76 NPKRVLIIGGGD--GGTLREVLKHP----SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--FVAE- 146 (283)
T ss_pred CCCEEEEEecCc--hHHHHHHHcCC----CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--HHhh-
Confidence 456899999995 55566665421 235799999999877655332210 1235578999999765 3333
Q ss_pred CcccccEEEEecCC
Q 004087 457 SVSKARAIIVLASD 470 (774)
Q Consensus 457 gI~~A~aVIiltdd 470 (774)
.-.+.|.||+...+
T Consensus 147 ~~~~yDvIi~D~~d 160 (283)
T PRK00811 147 TENSFDVIIVDSTD 160 (283)
T ss_pred CCCcccEEEECCCC
Confidence 34578999986544
No 471
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=60.71 E-value=17 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=29.3
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
+++|+|+|+|..|..++..|.+. |.+|++++..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~---g~~Vtli~~~ 212 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADF---GVEVTVVEAA 212 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc---CCeEEEEEec
Confidence 57999999999999999999874 9999999853
No 472
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=60.65 E-value=20 Score=40.44 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCCh-------------------hHHHHHhhcCCCCcCCC----
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPE-------------------KEREKKLTDGGLDISGL---- 696 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~-------------------~er~~~l~~~g~~~~~l---- 696 (774)
...+|+|+|.|..|..++..|... |. ++++++. + +.+.+.+++ ++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~---Gvg~i~lvD~--d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~------~l~~~n 202 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAA---GVGTLGIVDH--DVVDRSNLQRQILHTEDRVGQPKVDSAAQ------RLAALN 202 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeC--CEecchhhccccccchhhCCCcHHHHHHH------HHHHHC
Q ss_pred CCceEEEEecCcccHhhhhcCCCCCccEEEEeeCC
Q 004087 697 MNIKLVHREGNAVIRRHLESLPLETFDSILILADE 731 (774)
Q Consensus 697 ~~i~V~~i~GD~td~~~L~~~~I~~aD~vIiLtdd 731 (774)
+++.+.......+.....+- +.++|.||..+|.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~--~~~~D~Vv~~~d~ 235 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEAL--LQDVDVVVDGADN 235 (376)
T ss_pred CCCEEEEEeccCChHHHHHH--HhCCCEEEECCCC
No 473
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.58 E-value=13 Score=42.73 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=27.9
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 644 rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
+|+|+|.|..|...++.|.+ .|.+|++.+..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~---~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA---QGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH---CCCEEEEECCCC
Confidence 69999999999999988876 499999999654
No 474
>PRK07109 short chain dehydrogenase; Provisional
Probab=60.57 E-value=47 Score=36.61 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=52.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + .. .+..+..+.+|.+|++.++++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~---~G~~Vvl~~R~~--~~l~~~~~~-l--~~-~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFAR---RGAKVVLLARGE--EGLEALAAE-I--RA-AGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCH--HHHHHHHHH-H--HH-cCCcEEEEEecCCCHHHHHHHHHH
Confidence 457999998 6689999999976 499999988643 333333220 0 00 123355789999999887643
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|-.+.
T Consensus 79 ~~~~~g~iD~lInnAg 94 (334)
T PRK07109 79 AEEELGPIDTWVNNAM 94 (334)
T ss_pred HHHHCCCCCEEEECCC
Confidence 1346788877665
No 475
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=60.44 E-value=22 Score=41.57 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=31.5
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
.+++++|+|+|.+|..++..|.++...|.+|++++..+
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~ 223 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN 223 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 45799999999999999998876545599999998543
No 476
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=60.31 E-value=13 Score=40.09 Aligned_cols=69 Identities=22% Similarity=0.124 Sum_probs=48.3
Q ss_pred cccccHHHHHHHHHHhcCCC--CeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCccEEE
Q 004087 649 GWRRDIDDMIMVLEAFLAPG--SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSIL 726 (774)
Q Consensus 649 Gwg~~g~~l~~~L~~~l~~G--s~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~aD~vI 726 (774)
|+|-.|..++++|-+. | .+|++++..+.......+. .++.. .+++||.+|++.|+++ ++.+|.|+
T Consensus 5 gsGflG~~iv~~Ll~~---g~~~~Vr~~d~~~~~~~~~~~~-------~~~~~--~~~~~Di~d~~~l~~a-~~g~d~V~ 71 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLER---GYIYEVRVLDRSPPPKFLKDLQ-------KSGVK--EYIQGDITDPESLEEA-LEGVDVVF 71 (280)
T ss_pred CCcHHHHHHHHHHHHC---CCceEEEEcccccccccchhhh-------cccce--eEEEeccccHHHHHHH-hcCCceEE
Confidence 4578999999999763 6 7888888654332212221 12222 1689999999999986 67889888
Q ss_pred EeeC
Q 004087 727 ILAD 730 (774)
Q Consensus 727 iLtd 730 (774)
=++.
T Consensus 72 H~Aa 75 (280)
T PF01073_consen 72 HTAA 75 (280)
T ss_pred EeCc
Confidence 8864
No 477
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=60.26 E-value=34 Score=35.19 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEV 677 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~ 677 (774)
...+|+|+|.|..|..++..|.+. |. ++++++.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA---GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCC
Confidence 456899999999999999999864 87 69999865
No 478
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=60.22 E-value=64 Score=32.92 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=52.0
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|..|.+....+ ++.+.+.+ .+. ..+..+.+|.+|.+.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~---~g~~v~~~~~~~--~~~~~~~~------~~~-~~~~~~~~D~~~~~~~~~~~~~ 73 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHA---QGAIVGLHGTRV--EKLEALAA------ELG-ERVKIFPANLSDRDEVKALGQK 73 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEcCCH--HHHHHHHH------HhC-CceEEEEccCCCHHHHHHHHHH
Confidence 358999997 6789999999976 488777766433 33333332 111 1244678999999887653
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 74 ~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 74 AEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 23567988888764
No 479
>PRK07035 short chain dehydrogenase; Provisional
Probab=60.16 E-value=40 Score=34.85 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=43.7
Q ss_pred cCeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004087 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (774)
Q Consensus 382 k~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~r 455 (774)
.+.++|.|.+. .+..++++|.+. +..|++++++++..+...++... .+..+.+++.|..+.+.+++
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~ 74 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQ------GAHVIVSSRKLDGCQAVADAIVA--AGGKAEALACHIGEMEQIDA 74 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHH
Confidence 35788999776 478888888753 46788888887666655443211 12345667778887776654
No 480
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=60.05 E-value=1.7e+02 Score=33.49 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=29.1
Q ss_pred hhccccccCCCCChhHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 004087 255 FSKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVS 310 (774)
Q Consensus 255 ~~~~~~~~~~~v~l~~rl~y~ld~~~s~~~~~~~l~Ll~~~l~lil~g~~~~~~ie 310 (774)
+++.....+++.+.-+-+. .+.+.||...+.-++. .++=++++|+++|+.+.
T Consensus 114 ~~~s~k~l~P~~~rlNP~~-GlKriFS~~~l~el~K---sllKv~li~~v~~~~~~ 165 (386)
T PRK12468 114 VLFSGESIKFDLKRMSPVA-GLKRMFSSQALAELLK---AILKATLVGWVTGLFLW 165 (386)
T ss_pred ceeccccCCCCchhcCHHH-HHHHhccHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4555566666665554443 4677788777654443 33334455666665543
No 481
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=60.02 E-value=20 Score=40.72 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.2
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecC
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~ 677 (774)
..++|+|+|+|..|..++..|.+. |.+|++++..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~---g~~Vtli~~~ 169 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRER---GKNVTLIHRS 169 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEECC
Confidence 357999999999999999998863 8899999864
No 482
>PRK12743 oxidoreductase; Provisional
Probab=60.00 E-value=54 Score=34.11 Aligned_cols=82 Identities=10% Similarity=0.031 Sum_probs=51.0
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|++ .+|..+++.|.+ .|.+|.++.... .+..+.+.+. + .. .+..+..+.+|.+|.+.++++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~---~G~~V~~~~~~~-~~~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQ---QGFDIGITWHSD-EEGAKETAEE-V--RS-HGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCC-hHHHHHHHHH-H--Hh-cCCceEEEEccCCCHHHHHHHHHH
Confidence 3579999984 689999999976 499988775322 2222222210 0 00 122455789999998765431
Q ss_pred ---CCCCccEEEEeeCC
Q 004087 718 ---PLETFDSILILADE 731 (774)
Q Consensus 718 ---~I~~aD~vIiLtdd 731 (774)
.....|.+|..+..
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 74 LIQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12467888887764
No 483
>PRK14727 putative mercuric reductase; Provisional
Probab=59.90 E-value=19 Score=41.88 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEec
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNE 676 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~ 676 (774)
.+++++|+|+|.+|..++..|.+. |.+|++++.
T Consensus 187 ~~k~vvVIGgG~iG~E~A~~l~~~---G~~Vtlv~~ 219 (479)
T PRK14727 187 LPASLTVIGSSVVAAEIAQAYARL---GSRVTILAR 219 (479)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCEEEEEEc
Confidence 357999999999999999999864 899999975
No 484
>PLN02253 xanthoxin dehydrogenase
Probab=59.77 E-value=19 Score=37.97 Aligned_cols=79 Identities=10% Similarity=0.139 Sum_probs=52.8
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCC-CCceEEEEecCcccHhhhhcC--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL-MNIKLVHREGNAVIRRHLESL-- 717 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l-~~i~V~~i~GD~td~~~L~~~-- 717 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ +..+.+.+ .+ .+..+..+++|.+|++.++++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~---~G~~v~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~Dl~d~~~~~~~~~ 86 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHK---HGAKVCIVDLQD--DLGQNVCD------SLGGEPNVCFFHCDVTVEDDVSRAVD 86 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHH------HhcCCCceEEEEeecCCHHHHHHHHH
Confidence 467999998 4689999999976 499999987643 22222222 11 112355789999999877542
Q ss_pred ----CCCCccEEEEeeCC
Q 004087 718 ----PLETFDSILILADE 731 (774)
Q Consensus 718 ----~I~~aD~vIiLtdd 731 (774)
.....|.+|-.++.
T Consensus 87 ~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 87 FTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 12467888887753
No 485
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.73 E-value=18 Score=41.87 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=29.5
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCC
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p 678 (774)
.++|+|+|+|+.|..+++.|.+ .|.+|++.+..+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~---~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVK---LGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHH---CCCEEEEECCCC
Confidence 4689999999999999999986 499999998654
No 486
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=59.59 E-value=17 Score=39.39 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=35.1
Q ss_pred CceEEEEcccccHHHHHHHHHHhcCCC-CeEEEEecCChhHHHHHhhc
Q 004087 642 PEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 642 ~~rILI~Gwg~~g~~l~~~L~~~l~~G-s~v~II~~~p~~er~~~l~~ 688 (774)
.++++|+|.|..+..++..|.+. | .+|+|++.. .+|.+.|++
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~---G~~~i~I~nRt--~~ka~~La~ 167 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL---GVTDITVINRN--PDKLSRLVD 167 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc---CCCeEEEEeCC--HHHHHHHHH
Confidence 56899999999999999999763 6 479999864 588888876
No 487
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=59.57 E-value=1.2e+02 Score=32.96 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=64.5
Q ss_pred eEEEEcc--cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004087 384 HILILGW--SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (774)
Q Consensus 384 HIII~G~--g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A 461 (774)
++|=+|. |..+..+++.+.. +..|+-+|-+++.++...++....+.+.++..+.||..+...+..... ..
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~~-------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~-~~ 137 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALRQ-------PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPA-AG 137 (301)
T ss_pred eEEecCCCcchhHHHHHHhhcc-------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccc-cC
Confidence 4443454 4455556655531 367899999998776665543222334567889999987544432211 33
Q ss_pred cEEEEecCC--CCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcC
Q 004087 462 RAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVG 515 (774)
Q Consensus 462 ~aVIiltdd--~~~~~sDa~NI~~~Laar~l~p~~~~~IIArv~d~e~~~~l~~~G 515 (774)
+.+++..+. .+-...|..++...+ .+.+.|+ ...+.-+........+..+-
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i-~~~L~pg--G~~lig~d~~~~~~~~~~aY 190 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRI-RQLLGPG--GGLLIGVDLVKDPAVLEAAY 190 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHH-HHhcCCC--CEEEEeccCCCCHHHHHHhh
Confidence 555555443 222233443333332 2446664 34555555555555554443
No 488
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=59.49 E-value=30 Score=42.73 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHhhccCCC-CCCCCccCceeeehhhHhHHHHHHHHHHHHHHHHHH
Q 004087 312 SSFAEALWLSWTFVADSGNH-ADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (774)
Q Consensus 312 ~s~~dAly~~~~TltTvGyg-d~~~t~~gRi~~v~lil~Gl~ifa~lig~i~~~i~~ 367 (774)
.++..|+|..|..+..---- +.|.++.+|+.+.+|.++++++++.-.+-+++++.+
T Consensus 608 FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred eehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999998877642222 225778899999999999999998877777766554
No 489
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=59.48 E-value=17 Score=38.97 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhc
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~ 688 (774)
..++++|+|.|..|..++..|.+ .|.+|++++.. .++.+.+++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~---~g~~v~v~~R~--~~~~~~la~ 158 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLK---ADCNVIIANRT--VSKAEELAE 158 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH
Confidence 35689999999999999999976 37899999864 466666654
No 490
>PRK05854 short chain dehydrogenase; Provisional
Probab=59.41 E-value=25 Score=38.23 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=52.5
Q ss_pred CceEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcC---
Q 004087 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (774)
Q Consensus 642 ~~rILI~Gwg-~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~--- 717 (774)
.+.++|.|++ .+|..+++.|.+ .|.+|.++..++ ++.+...+ .+. ...++..+.++..|.+|.+..++.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~---~G~~Vil~~R~~--~~~~~~~~-~l~-~~~~~~~v~~~~~Dl~d~~sv~~~~~~ 86 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAA---AGAEVILPVRNR--AKGEAAVA-AIR-TAVPDAKLSLRALDLSSLASVAALGEQ 86 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH-HHH-HhCCCCceEEEEecCCCHHHHHHHHHH
Confidence 4689999984 579999999986 499999887643 33332221 000 012334566789999998866532
Q ss_pred ---CCCCccEEEEeeC
Q 004087 718 ---PLETFDSILILAD 730 (774)
Q Consensus 718 ---~I~~aD~vIiLtd 730 (774)
.....|.+|--++
T Consensus 87 ~~~~~~~iD~li~nAG 102 (313)
T PRK05854 87 LRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHhCCCccEEEECCc
Confidence 2345788776654
No 491
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=59.38 E-value=29 Score=38.30 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=52.0
Q ss_pred cCeEEEEccc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh---cccCCccEEEEEeCCCCHHHHhccC
Q 004087 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (774)
Q Consensus 382 k~HIII~G~g-~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~---~~~~~~~V~~I~Gd~t~~e~L~rAg 457 (774)
..+|+|.|.. -.|..++++|... +..|+.++.............. ......++.++.||..+.+.|.++
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~------g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~- 87 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFL------NQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA- 87 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-
Confidence 3579999974 4588899999863 3577777764322111111110 000113578899999999888765
Q ss_pred cccccEEEEecCC
Q 004087 458 VSKARAIIVLASD 470 (774)
Q Consensus 458 I~~A~aVIiltdd 470 (774)
+++++.||=++..
T Consensus 88 ~~~~d~ViHlAa~ 100 (348)
T PRK15181 88 CKNVDYVLHQAAL 100 (348)
T ss_pred hhCCCEEEECccc
Confidence 4568999888754
No 492
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=59.36 E-value=42 Score=38.21 Aligned_cols=85 Identities=18% Similarity=0.063 Sum_probs=50.0
Q ss_pred CCceEEEEcccccHHHHHHHHHHhcCCCC-eEEEEecCChh----HHHHHhh--cCCCC---------cCCCCCceEEEE
Q 004087 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK----EREKKLT--DGGLD---------ISGLMNIKLVHR 704 (774)
Q Consensus 641 ~~~rILI~Gwg~~g~~l~~~L~~~l~~Gs-~v~II~~~p~~----er~~~l~--~~g~~---------~~~l~~i~V~~i 704 (774)
...+|+|+|.|..|..++..|... |. +++|++.+.-+ .|.-... +.|.. ...-+++.|..+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAA---GVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHc---CCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 356899999999999999999863 43 68888854222 1211111 11100 001256777666
Q ss_pred ecCcccHhhhhcCCCCCccEEEEeeC
Q 004087 705 EGNAVIRRHLESLPLETFDSILILAD 730 (774)
Q Consensus 705 ~GD~td~~~L~~~~I~~aD~vIiLtd 730 (774)
....+... +.+. +.++|.||..+|
T Consensus 118 ~~~i~~~~-~~~~-~~~~D~Vvd~~d 141 (392)
T PRK07878 118 EFRLDPSN-AVEL-FSQYDLILDGTD 141 (392)
T ss_pred eccCChhH-HHHH-HhcCCEEEECCC
Confidence 66655432 2222 678997776654
No 493
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=59.32 E-value=96 Score=33.71 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=48.1
Q ss_pred eEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004087 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (774)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAgI~~A~a 463 (774)
+|-|+|.|..+..++..|.+. ++.|++.+++++.++...+. +... ..+.+++..+ +..+|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~~~~~l~~~--------g~~~----~~s~~~~~~~-~~~~dv 62 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQDAVKAMKED--------RTTG----VANLRELSQR-LSAPRV 62 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHc--------CCcc----cCCHHHHHhh-cCCCCE
Confidence 688999999999999999763 47888899999887765431 1111 1344554432 457899
Q ss_pred EEEecCC
Q 004087 464 IIVLASD 470 (774)
Q Consensus 464 VIiltdd 470 (774)
|+++.++
T Consensus 63 Ii~~vp~ 69 (298)
T TIGR00872 63 VWVMVPH 69 (298)
T ss_pred EEEEcCc
Confidence 9999865
No 494
>PRK05599 hypothetical protein; Provisional
Probab=59.25 E-value=32 Score=35.83 Aligned_cols=65 Identities=31% Similarity=0.215 Sum_probs=42.4
Q ss_pred eEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004087 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
.++|.|.+. .|..++++|.+ +..|+++.++++.++...++... .....+.++..|.++++.++++
T Consensus 2 ~vlItGas~GIG~aia~~l~~-------g~~Vil~~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~d~~~v~~~ 67 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-------GEDVVLAARRPEAAQGLASDLRQ-RGATSVHVLSFDAQDLDTHREL 67 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHHh-ccCCceEEEEcccCCHHHHHHH
Confidence 578999876 57778888752 36778888887777665443311 1112366777888887776553
No 495
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=59.23 E-value=14 Score=31.69 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=25.8
Q ss_pred eEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 004087 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (774)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~ 421 (774)
+++|+|.|..+..++..|... +..|.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999999764 36777777654
No 496
>PRK05865 hypothetical protein; Provisional
Probab=59.16 E-value=34 Score=42.89 Aligned_cols=90 Identities=11% Similarity=-0.034 Sum_probs=60.1
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCCCCCc
Q 004087 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (774)
Q Consensus 644 rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~I~~a 722 (774)
+|+|.|+ |-+|..+++.|.+ .|.+|+++...+.. .+. .+ +.+++||.+|.+.++++ ++.+
T Consensus 2 kILVTGATGfIGs~La~~Ll~---~G~~Vv~l~R~~~~----~~~---------~~--v~~v~gDL~D~~~l~~a-l~~v 62 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLS---QGHEVVGIARHRPD----SWP---------SS--ADFIAADIRDATAVESA-MTGA 62 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHH---CcCEEEEEECCchh----hcc---------cC--ceEEEeeCCCHHHHHHH-HhCC
Confidence 6999997 8899999999975 48999999864211 111 12 34689999999888764 3468
Q ss_pred cEEEEeeCCCCcCCcCCCcHHHHHHHHHHHHHhh
Q 004087 723 DSILILADESLEDSIVHSDSRSLATLLLIRDIQR 756 (774)
Q Consensus 723 D~vIiLtdd~~~~~~~~~Ds~~L~tlLl~r~i~~ 756 (774)
|.||-++.... ...+.+...+.-+++.+.+
T Consensus 63 D~VVHlAa~~~----~~~~vNv~GT~nLLeAa~~ 92 (854)
T PRK05865 63 DVVAHCAWVRG----RNDHINIDGTANVLKAMAE 92 (854)
T ss_pred CEEEECCCccc----chHHHHHHHHHHHHHHHHH
Confidence 99999875321 1234455555555554443
No 497
>PRK08263 short chain dehydrogenase; Provisional
Probab=59.11 E-value=37 Score=35.81 Aligned_cols=77 Identities=16% Similarity=0.016 Sum_probs=52.7
Q ss_pred CeEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004087 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (774)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rAg---- 457 (774)
..++|.|.+. .+..++++|.+. +..|++++++++..+...+.. +..+.++++|.++++.++++-
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALER------GDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHH
Confidence 3578888765 577788888652 467888888887766543321 235778899999998876531
Q ss_pred --cccccEEEEecCC
Q 004087 458 --VSKARAIIVLASD 470 (774)
Q Consensus 458 --I~~A~aVIiltdd 470 (774)
....|.+|-++..
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 73 EHFGRLDIVVNNAGY 87 (275)
T ss_pred HHcCCCCEEEECCCC
Confidence 1245788877754
No 498
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=59.11 E-value=54 Score=33.59 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.4
Q ss_pred ccCeEEEEcccchHHHHHHHHHHhcccCCCCceEEEEcCC
Q 004087 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (774)
Q Consensus 381 ~k~HIII~G~g~~~~~li~eL~~~~~~~~~~~iVVLid~d 420 (774)
.+-||+|+|.|..+.++++.|.... -..+.++|.|
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~G-----Vg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAG-----IDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcC-----CCEEEEEECC
Confidence 4679999999999999999998753 2456666655
No 499
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.08 E-value=38 Score=37.42 Aligned_cols=71 Identities=20% Similarity=0.104 Sum_probs=50.8
Q ss_pred cccC-eEEEEcccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004087 380 IEKN-HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (774)
Q Consensus 380 ~~k~-HIII~G~g~-~~~~li~eL~~~~~~~~~~~iVVLid~d~e~le~~l~~~~~~~~~~~V~~I~Gd~t~~e~L~rA 456 (774)
..++ -+||.|.+. .|...+++|.. .|..|++.-+|.+..++..++........++.+++.|.++.+..++.
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~------~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~f 104 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELAL------RGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKF 104 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHh------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHH
Confidence 3444 677788886 57888999986 34788899888877777666554444566778888888887776653
No 500
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=59.06 E-value=20 Score=38.96 Aligned_cols=80 Identities=10% Similarity=-0.013 Sum_probs=52.7
Q ss_pred CceEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEecCChhHHHHHhhcCCCCcCCCCCceEEEEecCcccHhhhhcCC--
Q 004087 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (774)
Q Consensus 642 ~~rILI~Gw-g~~g~~l~~~L~~~l~~Gs~v~II~~~p~~er~~~l~~~g~~~~~l~~i~V~~i~GD~td~~~L~~~~-- 718 (774)
.++++|.|+ |.+|..+++.|.+ .|.+|.++..+ +++.+.+.+. + ...+..+.++.+|.+|.+.+++.-
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~---~G~~V~~~~r~--~~~~~~~~~~-l---~~~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAK---RGWHVIMACRN--LKKAEAAAQE-L---GIPPDSYTIIHIDLGDLDSVRRFVDD 76 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHH-h---hccCCceEEEEecCCCHHHHHHHHHH
Confidence 467999998 5689999999976 48999988754 3444433320 0 011224556899999988765421
Q ss_pred ----CCCccEEEEeeC
Q 004087 719 ----LETFDSILILAD 730 (774)
Q Consensus 719 ----I~~aD~vIiLtd 730 (774)
....|.+|-.++
T Consensus 77 ~~~~~~~iD~li~nAg 92 (322)
T PRK07453 77 FRALGKPLDALVCNAA 92 (322)
T ss_pred HHHhCCCccEEEECCc
Confidence 134788887765
Done!