BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004089
(774 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
+R G T LH A +L+ ++VL+K+ D+ N DN+G+ P+ LAAL+GH + + LLK
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEVLLK- 101
Query: 270 THGVDI 275
HG D+
Sbjct: 102 -HGADV 106
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYS-GN 279
A G +++LM D+ N D +G P+ LAA Y H + + LLK HG D+ + N
Sbjct: 22 ARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLK--HGADVNAHDN 78
Query: 280 DGA--LVLANLI-HARLYDVAL 298
DG+ L LA L H + +V L
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLL 100
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH AA G+L+ ++VL+K+ D+ N DN+G P+ LAA YGH + + LLK HG
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK--HG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A+ G+L+ ++VL+K D+ N D G P+ LAA GH + + LLK HG
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLK--HG 103
Query: 273 VDIYS-GNDG 281
D+ + NDG
Sbjct: 104 ADVNAYDNDG 113
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGN 279
A G +++LM D+ N DN+G P+ LAA GH + + LLK +G D+ + +
Sbjct: 22 ARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLK--NGADVNASD 77
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ G+T LH A KG+L+ ++VL+K+ D+ N D G P+ LAALYGH + + LLK
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 269 ETHGVDI 275
+G D+
Sbjct: 102 --NGADV 106
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
++ G T LH A G+L+ ++VL+K D+ N D G P+ LAA GH + + LLK
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLK- 134
Query: 270 THGVDI 275
+G D+
Sbjct: 135 -YGADV 139
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGN- 279
A G +++LM D+ N D+ G P+ LAA+ GH + + LLK HG D+ + +
Sbjct: 22 ARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLK--HGADVNAADK 78
Query: 280 --DGALVLANLI-HARLYDVAL 298
D L LA L H + +V L
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLL 100
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+ +G T LH A G+L+ ++VL+KY D+ N +D G ++ G++D + L K
Sbjct: 110 DTYGFTPLHLAADAGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
+ +G T LH A+ G+L+ ++VL+KY D+ N +D G P+ LAA +GH + + LLK
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK- 122
Query: 270 THGVDI 275
HG D+
Sbjct: 123 -HGADV 127
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
+ +GRT LH AA G+L+ ++VL++ D+ N D GT P+ LAA GH + + LLK
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLK- 89
Query: 270 THGVDI 275
+G D+
Sbjct: 90 -YGADV 94
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 186 ESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN 245
+ DE L+ N A + + L G T LH A G+L+ ++VL+KY D+ N DN
Sbjct: 26 QDDEVRILMANGADVNATDWL------GHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDN 78
Query: 246 EGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHP 305
G P+ LAA GH + + LLK HG D+ + + +H YD L+++++
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLK--HGADVNAKDYEGF---TPLHLAAYDGHLEIVEVLL 133
Query: 306 TIGRD 310
G D
Sbjct: 134 KYGAD 138
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ G T LH A G+L+ ++VL+KY D+ N +D G ++ G++D + L K
Sbjct: 109 KDYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
+ G T LH A G+L+ ++VL+KY D+ N DN G P+ LAA+ GH + + LLK
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLLK- 101
Query: 270 THGVDI 275
HG D+
Sbjct: 102 -HGADV 106
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ G T LH A +G+L+ ++VL+K+ D+ N +D G ++ G++D + L K
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N D +G P+ LAA GH + + LLK +G D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLK--YGADV 73
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 186 ESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN 245
+ DE L+ N A + +A G T LH A G+L+ ++VL+K+ D+ N D
Sbjct: 26 QDDEVRILMANGADVNATDA------SGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDI 78
Query: 246 EGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
G+ P+ LAAL GH + + LLK HG D+
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLK--HGADV 106
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K+ D+ N D G P+ LAA+ GH + + LLK HG
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK--HG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N D G P+ LAA YGH + + LLK HG D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK--HGADV 73
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
G T LH A G+L+ ++VL+K+ D+ N +D G ++ G++D + L K
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++R G +H A G L ++ L++++ D+ N+ DNEG LP+ LAA GH ++L+K
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 269 ET 270
T
Sbjct: 125 HT 126
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKD 261
++ G LH A +G+L+ ++ L+K+ R+++G LA LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 183 VDVESDEGTCLVDNLASIVVPEALARQNRHGR----------TALHFCAAKGNLKAIKVL 232
V+ D+G+ + A I PE + +HG T LH A G+L+ ++VL
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 233 MKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
+KY D+ N +D G P+ LAA GH + + LLK HG D+
Sbjct: 100 LKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK--HGADV 139
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N D++G+ P+ LAA GH + + LLK HG D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLK--HGADV 73
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
Q+ +G T LH A +G+L+ ++VL+K+ D+ N +D G ++ G++D + L K
Sbjct: 109 QDAYGLTPLHLAADRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 186 ESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN 245
+ DE L+ N A + +A G T LH A G+L+ ++VL+K+ D+ N D
Sbjct: 26 QDDEVRILMANGADVNATDA------SGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDI 78
Query: 246 EGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
G+ P+ LAAL GH + + LLK HG D+
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLK--HGADV 106
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K+ D+ N D G P+ LAA+ GH + + LLK HG
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK--HG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N D G P+ LAA YGH + + LLK HG D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK--HGADV 73
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
G T LH A G+L+ ++VL+K+ D+ N +D G ++ G++D + L K
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++R G +H A G L ++ L++++ D+ N+ DNEG LP+ LAA GH ++L+K
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 269 ET 270
T
Sbjct: 125 HT 126
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKD 261
++ G LH A +G+L+ ++ L+K+ R+++G LA LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 212 HGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETH 271
+G T LH AA G L+ ++VL+K D+ N D+ G P+ LAA GH + + LLK H
Sbjct: 38 NGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLK--H 94
Query: 272 GVDI 275
G D+
Sbjct: 95 GADV 98
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K+ D+ N D G P+ LAAL G + + LLK HG
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK--HG 128
Query: 273 VDI 275
D+
Sbjct: 129 ADV 131
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGND 280
AA G +++LM D+ N D+ G P+ LAA G + + LLK +G D+ + +
Sbjct: 14 AAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLK--NGADVNASDS 70
Query: 281 GALVLANLIHARLYDVALDLLKLHPTIGRD 310
+ +H YD L+++++ G D
Sbjct: 71 AGI---TPLHLAAYDGHLEIVEVLLKHGAD 97
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYL 266
+R G T LH A G L+ ++VL+K+ D+ N +D G ++ G +D + L
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKHGADV-NAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++R G +H A G L ++ L++++ D+ N+ DNEG LP+ LAA GH ++L+K
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 269 ET 270
T
Sbjct: 125 HT 126
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKD 261
++ G LH A +G+L+ ++ L+K+ R+++G LA LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++R G +H A G L ++ L++++ D+ N+ DNEG LP+ LAA GH ++L+K
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 269 ET 270
T
Sbjct: 125 HT 126
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKD 261
++ G LH A +G+L+ ++ L+K+ R+++G LA LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A +G+L+ ++VL+KY D+ N D G+ P+ LAA GH + + LLK +G
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLK--YG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ +G T LH A G+L+ ++VL+K D+ N D G+ P+ LAA GH + + LLK
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 269 ETHGVDI 275
+G D+
Sbjct: 102 --YGADV 106
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI----Y 276
A G +++LM D+ N D G P+ LAA GH + + LLK +G D+ +
Sbjct: 22 ARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLK--NGADVNALDF 78
Query: 277 SGNDGALVLANLIHARLYDVAL 298
SG+ + A H + +V L
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLL 100
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
++ G T LH A +G+L+ ++VL+KY D+ N D +G P+ LAA GH + + LLK
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLK- 134
Query: 270 THGVDI 275
+G D+
Sbjct: 135 -YGADV 139
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH G+L+ I+VL+KY D+ N D G P+ LAA GH + + LLK +G
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLK--YG 103
Query: 273 VDI 275
D+
Sbjct: 104 ADV 106
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ G T LH A G+L+ ++VL+K D+ N D+ G P++LAAL+GH + + LLK
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 269 ETHGVDIYSGND 280
+G D+ + ND
Sbjct: 102 --NGADV-NAND 110
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T L A G+L+ ++VL+K D+ N D EG P+ LAA++GH + + LLK +G
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK--NG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++++GRT LH A G+L+ +K+L++ D+ N +D G P+ LAA GH + + LL+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 269 ETHGVDI 275
G D+
Sbjct: 90 A--GADV 94
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++++GRT LH A G+L+ +K+L++ D+ N +D G P+ LAA GH + + LL+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 212 HGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETH 271
+GRT LH A G+L+ +K+L++ D+ N +D G P+ LAA GH + + LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 272 GVDI 275
G D+
Sbjct: 58 GADV 61
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A +G+L+ ++VL+K D+ N D+ G P+ LAA GH + + LLK HG
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEVLLK--HG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K D+ N D+ G P+ LAA GH + + LLK +G
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVLLK--NG 103
Query: 273 VDIYSGNDGAL----VLANLIHARLYDVAL 298
D+ + + + AN+ H + +V L
Sbjct: 104 ADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N D+ G P+ LAA +GH + + LLK +G D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLK--NGADV 73
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+ +G T LH A G+L+ ++VL+K+ D+ N +D G ++ G++D + L K
Sbjct: 110 DHNGFTPLHLAANIGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K D+ N D G+ P+ LAA +GH + + LLK +G
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLK--NG 103
Query: 273 VDIYSGNDGAL----VLANLIHARLYDVAL 298
D+ + +D + + AN H + +V L
Sbjct: 104 ADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K D+ N +D+ G P+ LAA GH + + LLK +G
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADV-NAKDDNGITPLHLAANRGHLEIVEVLLK--YG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ +G T LH A +G+L+ ++VL+KY D+ N +D G ++ G++D + L K
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYS--G 278
A G +++LM D+ N D G P+ LAA +GH + + LLK V+ Y G
Sbjct: 22 ARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 279 NDGALVLANLIHARLYDVAL 298
+ + A+ H + +V L
Sbjct: 81 STPLHLAAHFGHLEIVEVLL 100
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ + TA+H AAKGNLK + +L+ YK TN++D EG P+ LA + ++L+
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLV- 192
Query: 269 ETHGVDIYSGN 279
T G IY N
Sbjct: 193 -TQGASIYIEN 202
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 200 IVVPEALA-RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYG 258
I+ ++LA R ++ RTALH+ + G+ + ++ L++ + N +D+ G P+ +AA G
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAG 84
Query: 259 HKDTFQYLL 267
+ + LL
Sbjct: 85 RDEIVKALL 93
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++++GRT LH A G+L+ +K+L++ D+ N +D G P+ LAA GH + + LL+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 212 HGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETH 271
+GRT LH A G+L+ +K+L++ D+ N +D G P+ LAA GH + + LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 272 GVDI 275
G D+
Sbjct: 58 GADV 61
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ + TA+H AAKGNLK + +L+ YK TN++D EG P+ LA + ++L+
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLV- 192
Query: 269 ETHGVDIYSGN 279
T G IY N
Sbjct: 193 -TQGASIYIEN 202
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 200 IVVPEALA-RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYG 258
I+ ++LA R ++ RTALH+ + G+ + ++ L++ + N +D+ G P+ +AA G
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAG 84
Query: 259 HKDTFQYLL 267
+ + LL
Sbjct: 85 XDEIVKALL 93
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 212 HGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETH 271
+G T LH A G+L+ ++VL+KY D+ N D G+ P+ LAA GH + + LLK +
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLK--Y 135
Query: 272 GVDI 275
G D+
Sbjct: 136 GADV 139
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K+ D+ + D G P+ LAA+ GH + + LLK +G
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLK--YG 103
Query: 273 VDI 275
D+
Sbjct: 104 ADV 106
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++L+ D+ N DN G P+ LAA+ GH + + LLK HG D+
Sbjct: 22 ARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLK--HGADV 73
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKD 261
G T LH A +G+L+ ++VL+KY D+ N +D G ++ G++D
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNED 160
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A +G+L+ ++VL+K D+ N +D +G P+ LAA GH + + LLK
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 269 ETHGVDI 275
G D+
Sbjct: 102 A--GADV 106
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A +G+L+ ++VL+K D+ N +D +G P+ LAA GH + + LLK
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 269 ETHGVDI 275
G D+
Sbjct: 135 A--GADV 139
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N +D +G P+ LAA GH + + LLK G D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADV 73
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A +G+L+ ++VL+K D+ N +D +G P+ LAA GH + + LLK
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 269 ETHGVDI 275
G D+
Sbjct: 90 A--GADV 94
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A +G+L+ ++VL+K D+ N +D +G P+ LAA GH + + LLK
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 269 ETHGVDI 275
G D+
Sbjct: 123 A--GADV 127
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N +D +G P+ LAA GH + + LLK G D+
Sbjct: 10 ARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADV 61
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++R G +H A G L ++ L++ + D+ N+ DNEG LP+ LAA GH ++L+K
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 269 ET 270
T
Sbjct: 125 HT 126
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 193 LVDNLASIVVPEA-LARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPV 251
+D L +++ +A + ++ G LH A +G+L+ ++ L+K+ R+++G
Sbjct: 82 FLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 252 QLAALYGHKD 261
LA LYG +
Sbjct: 142 DLARLYGRNE 151
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A +G+L+ ++VL+K D+ N +D +G P+ LAA GH + + LLK
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 269 ETHGVDI 275
G D+
Sbjct: 90 A--GADV 94
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A +G+L+ ++VL+K D+ N +D +G P+ LAA GH + + LLK
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 269 ETHGVDI 275
G D+
Sbjct: 123 A--GADV 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N +D +G P+ LAA GH + + LLK G D+
Sbjct: 10 ARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADV 61
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A +G+L+ ++VL+K+ D+ N RD G P+ LAA GH + + LL+ +G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLE--YG 103
Query: 273 VDIYS 277
D+ +
Sbjct: 104 ADVNA 108
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
GRT LH A G+L+ ++VL++Y D+ N +D G ++ G++D + L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 229 IKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYS 277
+++LM D+ N D+ G P+ LAA GH + + LLK HG D+ +
Sbjct: 30 VRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLK--HGADVNA 75
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A +L+ ++VL+K D+ N D G P+ L A+YGH + + LLK
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Query: 269 ETHGVDI 275
HG D+
Sbjct: 102 --HGADV 106
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N D G P+ LAA+ H + + LLK +G D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLK--NGADV 73
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K D+ N D++G P+ LAA +G+ + + LLK HG
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLK--HG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
GR L A G +++LM D+ N DN GT P+ LAA GH + + LLK HG
Sbjct: 15 GRKLLE-AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLK--HG 70
Query: 273 VDI 275
D+
Sbjct: 71 ADV 73
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAA 255
TA+H AAKGNLK I +L+ YK TN++D EG P+ LA
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLAC 181
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 199 SIVVPEALA-RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALY 257
SI+ ++LA R ++ RTALH+ + G+ + ++ L++ + N +D+ G P+ +AA
Sbjct: 26 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA 84
Query: 258 GHKDTFQYLLKETHGVDIYSGN 279
G + + LL + V+ + N
Sbjct: 85 GRDEIVKALLGKGAQVNAVNQN 106
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAA 255
TA+H AAKGNLK I +L+ YK TN++D EG P+ LA
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLAC 180
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 199 SIVVPEALA-RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALY 257
SI+ ++LA R ++ RTALH+ + G+ + ++ L++ + N +D+ G P+ +AA
Sbjct: 25 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA 83
Query: 258 GHKDTFQYLLKETHGVDIYSGN 279
G + + LL + V+ + N
Sbjct: 84 GRDEIVKALLGKGAQVNAVNQN 105
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A +G+L+ ++VL+K+ D+ N D+ G P+ LAA GH + + LL+ +G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLE--YG 103
Query: 273 VDIYS 277
D+ +
Sbjct: 104 ADVNA 108
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
GRT LH A G+L+ ++VL++Y D+ N +D G ++ G++D + L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 229 IKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYS 277
+++LM D+ N D+ G P+ LAA GH + + LLK HG D+ +
Sbjct: 30 VRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLK--HGADVNA 75
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ GRT LH+ A +G+ + +K+L+ D+ N +D++G P+ AA GHK+ + L+
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLI- 123
Query: 269 ETHGVDI-YSGNDG 281
+ G D+ S +DG
Sbjct: 124 -SKGADVNTSDSDG 136
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
GRT LH+ A +G+ + +K+L+ D+ N +D++G P+ AA GHK+ + L+ + G
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLI--SKG 93
Query: 273 VDI 275
D+
Sbjct: 94 ADV 96
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A +G+L+ ++VL+K D+ N D+ G P+ LAA GH + + LLK +G
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLK--NG 136
Query: 273 VDI 275
D+
Sbjct: 137 ADV 139
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K D+ N +D+ G P+ LAA GH + + LLK +G
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLK--NG 103
Query: 273 VDIYSGNDGALVLANLIHAR 292
D+ + + +L R
Sbjct: 104 ADVNASDSHGFTPLHLAAKR 123
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+ HG T LH A +G+L+ ++VL+K D+ N +D G ++ G++D + L K
Sbjct: 110 DSHGFTPLHLAAKRGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N RD G P+ LAA +GH + + LLK +G D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLK--NGADV 73
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ +G T L+ A G+L+ ++VL+K D+ N D G P+ LAA GH + + LLK
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 269 ETHGVDI 275
HG D+
Sbjct: 102 --HGADV 106
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N +D G P+ LA +GH + + LLK +G D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLK--NGADV 73
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ G+T LH A G+ + +K+L+ D N +D++G P+ LAA GHK+ + LL
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 269 E 269
+
Sbjct: 125 Q 125
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
G+T LH A G+ + +K+L+ D N +D++G P+ LAA GHK+ + LL +
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 15/167 (8%)
Query: 103 RMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPD 162
R+IE + G +D VK++ E + D + G+ PL+ + V+ + + D
Sbjct: 7 RLIEAAE-NGNKDRVKDLLE--NGADVNASDSDGKT-PLHLAAENGHKEVVKLLLSQGAD 62
Query: 163 ALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAA 222
DG KT HL A E+ + L+ P A ++ G+T LH A
Sbjct: 63 PNAKDSDG-KTPLHLAA------ENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAE 112
Query: 223 KGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
G+ + +K+L+ D N D++G P+ LA +G+++ + L K+
Sbjct: 113 NGHKEVVKLLLSQGAD-PNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
Q+ G + +H A G L +KVL+++ D+ N D+ G+LP+ LA GH +L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 269 ETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTI 307
E+ D++ + L L R +D+L+ H I
Sbjct: 131 ES---DLHHRDASGLTPLELARQRGAQNLMDILQGHMMI 166
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 200 IVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGH 259
+V P+AL NR G+TAL A+++L + NV+D GT PV AA G
Sbjct: 34 LVHPDAL---NRFGKTALQVMMFGSPAVALELLKQGAS--PNVQDASGTSPVHDAARTGF 88
Query: 260 KDTFQYLLKETHGVDI 275
DT + L++ HG D+
Sbjct: 89 LDTLKVLVE--HGADV 102
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A +G+L+ ++VL+K+ D+ N D G P+ LAA GH + + LL+ +G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLE--YG 103
Query: 273 VDIYS 277
D+ +
Sbjct: 104 ADVNA 108
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
GRT LH A G+L+ ++VL++Y D+ N +D G ++ G++D + L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 229 IKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYS 277
+++LM D+ N D+ G P+ LAA GH + + LLK HG D+ +
Sbjct: 30 VRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLK--HGADVNA 75
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
Q+ G + +H A G L +KVL+++ D+ N D+ G+LP+ LA GH +L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 269 ETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTI 307
E+ D++ + L L R +D+L+ H I
Sbjct: 129 ES---DLHHRDASGLTPLELARQRGAQNLMDILQGHMMI 164
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 200 IVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGH 259
+V P+AL NR G+TAL A+++L + NV+D GT PV AA G
Sbjct: 32 LVHPDAL---NRFGKTALQVMMFGSPAVALELLKQGAS--PNVQDASGTSPVHDAARTGF 86
Query: 260 KDTFQYLLKETHGVDI 275
DT + L++ HG D+
Sbjct: 87 LDTLKVLVE--HGADV 100
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ GRT LH+ A G+ + +K+L+ D N +D++G P+ AA GHK+ + LL
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 269 E 269
+
Sbjct: 125 K 125
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
GRT LH+ A G+ + +K+L+ D N +D++G P+ AA GHK+ + LL +
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ GRT LH+ A G+ + +K+L+ D N D++G P+ LA +G+++ + L K
Sbjct: 99 KDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 269 E 269
+
Sbjct: 158 Q 158
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A G+L+ ++VL+K D+ N N G P+ LAA H + + LLK HG
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLK--HG 103
Query: 273 VDI 275
D+
Sbjct: 104 ADV 106
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
GRT LH A +L+ ++VL+K+ D+ N +D G ++ G++D + L K
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI-YSGN 279
A G +++L D+ N D G P+ LAA+ GH + + LLK +G D+ +GN
Sbjct: 22 ARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLLK--NGADVNATGN 78
Query: 280 DG 281
G
Sbjct: 79 TG 80
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
GRTALH+ A N +K L+ K + +D +G P+ LAA G + YL+++
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 273 VDIYSGND 280
V+ D
Sbjct: 339 VEAVDATD 346
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVD 274
T LH+ +G+L + LMKY D + + D EG + LAA +GH YL+ + VD
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 275 IYSGN 279
+ N
Sbjct: 137 MMDQN 141
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 208 RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLL 267
R + G TALH AAKG + +K+L++ + D+ N++D +G P+ AA +G ++ + L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 268 K 268
+
Sbjct: 253 E 253
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
N G TALH N+ +K L++ ++ N DNEG +P+ AA G+ D +YL+ +
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 211 RHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKET 270
R G T LH + GN+K +K L++++ D+ N + G P+ AA GH D LLK
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 271 HGVDIYSGNDGALVLANLIHARL-YDVALDLLKL 303
+ S +DG LA I RL Y D+LK+
Sbjct: 368 ASPNEVS-SDGTTPLA--IAKRLGYISVTDVLKV 398
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 215 TALHFCAAKGNLKAIKVLMK--YKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
T LH + G+L +K L++ P+++NV+ P+ +AA GH + +YLL+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVET---PLHMAARAGHTEVAKYLLQNKAK 72
Query: 273 VDIYSGND 280
V+ + +D
Sbjct: 73 VNAKAKDD 80
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A + ++ + L++Y N +G P+ LAA GH + LL +
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 273 VDIYSGNDGALVLANLI----HARLYDV 296
++ GN L +L+ H + DV
Sbjct: 271 GNL--GNKSGLTPLHLVAQEGHVPVADV 296
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A +G+ + + +L+ + + N+ + G P+ L A GH L+K HG
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIK--HG 301
Query: 273 V 273
V
Sbjct: 302 V 302
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
Q+ G + +H A G L +KVL+++ D+ NV D G LP+ LA GH +L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 269 ETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLH 304
E+ D++ + L L R +D+L+ H
Sbjct: 129 ES---DLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 200 IVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGH 259
+V P+AL NR G+TAL A+++L + NV+D GT PV AA G
Sbjct: 32 LVHPDAL---NRFGKTALQVMMFGSTAIALELLKQGAS--PNVQDTSGTSPVHDAARTGF 86
Query: 260 KDTFQYLLKETHGVDI 275
DT + L++ HG D+
Sbjct: 87 LDTLKVLVE--HGADV 100
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
Q+ G + +H A G L +KVL+++ D+ NV D G LP+ LA GH +L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 269 ETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLH 304
E+ D++ + L L R +D+L+ H
Sbjct: 123 ES---DLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 200 IVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGH 259
+V P+AL NR G+TAL A+++L + NV+D GT PV AA G
Sbjct: 26 LVHPDAL---NRFGKTALQVMMFGSTAIALELLKQGAS--PNVQDTSGTSPVHDAARTGF 80
Query: 260 KDTFQYLLKETHGVDI 275
DT + L++ HG D+
Sbjct: 81 LDTLKVLVE--HGADV 94
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
GRT LH A G+ + +K+L+ D+ N +D++G P+ AA GHK+ + L+ + G
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLI--SKG 93
Query: 273 VDI 275
D+
Sbjct: 94 ADV 96
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++ GRT LH A G+ + +K+L+ D+ N D++G P+ LA +G+++ + L K
Sbjct: 99 KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 269 E 269
+
Sbjct: 158 Q 158
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 214 RTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGV 273
RT L A +L+A+K L+K L + +D EG+ + LAA GH + QYLL +
Sbjct: 45 RTPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ-M 102
Query: 274 DIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRD 310
D+ +DG +I A Y +DL+KL + G D
Sbjct: 103 DVNCQDDGGWT--PMIWATEYK-HVDLVKLLLSKGSD 136
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272
G T LH A KG+ + ++ L+ N +D+ G P+ A Y H D + LL +
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 273 VDI 275
++I
Sbjct: 137 INI 139
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 207 ARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYL 266
A+ ++ G+TAL + G + +K L+ + D+ NV+D++G+ + A +GHK+ L
Sbjct: 177 AKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLL 235
Query: 267 L 267
L
Sbjct: 236 L 236
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKE 269
++ G T LH A G+ + +K L+ D+ N R +G P+ LAA GH + + LL +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 270 THGVDI 275
G D+
Sbjct: 65 --GADV 68
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A G+ + +K+L+ D+ N R +G P LA GH + + L
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLL-- 94
Query: 269 ETHGVDI 275
+ G D+
Sbjct: 95 DAKGADV 101
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
N G T LH + KG++ +++ L++ D NV+D+ G P+ A +GH + LL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLL 267
G T LH G+LK +++L+++K L N + P+ AA GH D + LL
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 206 LARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQY 265
L +Q G TALH+C N + +K+L++ K + + + G P+ +A H+ +
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEEL 256
Query: 266 LLKETHG 272
L + G
Sbjct: 257 LTQALSG 263
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 195 DNLASIVVPEALARQNRHGR--TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQ 252
+ L +++ P + GR T LH A ++ +++L+++ D+ + +D G +P+
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLH 96
Query: 253 LAALYGHKDTFQYLLKETHGVDI 275
A YGH + + LLK HG +
Sbjct: 97 NACSYGHYEVTELLLK--HGACV 117
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 TNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALV-LANLIHARLYDVAL 298
+ D + P+ LAA Y Q LL+ HG D+++ + G LV L N Y+V
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 299 DLLK 302
LLK
Sbjct: 109 LLLK 112
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 214 RTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGV 273
RT LH A++G+ ++VL+K+ D+ N +D + A + H++ + L+K +G
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK--YGA 124
Query: 274 DIYS 277
D+++
Sbjct: 125 DVHT 128
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLL 267
NR T LH A+ G+ ++ L++YK D+ V ++ G +P+ A +G + L+
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQDQVAEDLV 120
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 206 LARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQY 265
L + + HG + LH+ +G +++L+ + NV + P+ LAA +GH+D Q
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 266 LLK 268
LL+
Sbjct: 86 LLQ 88
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLL 267
NR T LH A+ G+ ++ L++YK D+ V ++ G +P+ A +G + L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQDQVAEDLV 125
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 206 LARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQY 265
L + + HG + LH+ +G +++L+ + NV + P+ LAA +GH+D Q
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 266 LLK 268
LL+
Sbjct: 91 LLQ 93
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 217 LHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYL 266
+H A +G L + VL + L +VRD G LPV LA GH+D +YL
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 217 LHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYL 266
+H A +G L + VL + L +VRD G LPV LA GH+D +YL
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 193 LVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQ 252
L++N AS+ + +++ + LH A+ G+LK I++L N +D +G P+
Sbjct: 126 LIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 253 LAALYGHKDTFQYLLKETHGVD 274
A GH D LL E +G +
Sbjct: 180 HALAEGHGDA-AVLLVEKYGAE 200
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 193 LVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQ 252
L++N AS+ + +++ + LH A+ G+LK I++L N +D +G P+
Sbjct: 126 LIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 253 LAALYGHKDTFQYLLKETHGVD 274
A GH D LL E +G +
Sbjct: 180 HALAEGHGDA-AVLLVEKYGAE 200
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 193 LVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQ 252
L++N AS+ + +++ + LH A+ G+LK I++L N +D +G P+
Sbjct: 126 LIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 253 LAALYGHKDTFQYLLKETHGVD 274
A GH D LL E +G +
Sbjct: 180 HALAEGHGDA-AVLLVEKYGAE 200
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+R G TALH A A K L++ D ++DN G P+ A + FQ LL+
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLR 76
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLL 267
G+TALH+ AA N +A+ +L+ + + + +D++ P+ LAA G + + LL
Sbjct: 151 GKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALL 204
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAA 255
Q+ GRT LH A + ++L++ + N R ++GT P+ LAA
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA 126
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 186 ESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN 245
+ DE L+ N A + A ++++G T LH A G+L+ +K+L++ D+ N +D
Sbjct: 18 QDDEVRILMANGADV------AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-NAQDK 70
Query: 246 EGTLPVQLAALYGHKDTFQYL 266
G ++ G++D + L
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++H AA+G L +K ++ +L N D G P+ A+ +G +T ++LL+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 208 RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLL 267
+ + G T L + +A G ++ ++ L+++ D ++ E + LA+ G+ D LL
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLL 89
Query: 268 KETHGVDIYSGNDGALVL 285
+ ++IY N G +L
Sbjct: 90 ERDVDINIYDWNGGTPLL 107
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
++H AA+G L +K ++ +L N D G P+ A+ +G +T ++LL+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 208 RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLL 267
+ + G T L + +A G ++ ++ L+++ D ++ E + LA+ G+ D LL
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLL 89
Query: 268 KETHGVDIYSGNDGALVL 285
+ ++IY N G +L
Sbjct: 90 ERDVDINIYDWNGGTPLL 107
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 AAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275
A G +++LM D+ N +D +G P+ LAA GH + + LLK G D+
Sbjct: 10 ARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADV 61
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 209 QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK 268
+++ G T LH A +G+L+ ++VL+K D+ N +D G ++ G++D + L K
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 89
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTL-PVQLAALYGHKDTFQYLLK 268
+ +GRTAL F A G+ K +++L + DL + RD G L + +AA Y + + L++
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 269 ETHGVDI 275
G DI
Sbjct: 132 --LGADI 136
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 217 LHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKET 270
+H A +G L + VL + L +V D G LPV LA GH+D +YL T
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 186 ESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN 245
+ DE L+ N A + A ++++G T LH A G+L+ +K+L++ D+ +D
Sbjct: 36 QDDEVRILMANGADV------AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDK 88
Query: 246 EGTLPVQLAALYGHKDTFQYL 266
G ++ G++D + L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 213 GRTALHFCAAKGNLKAIKVLMKYKPDLT 240
G TALH A NL+A VLM+ P+L
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELV 64
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTL-PVQLAALYGHKDTFQYLLK 268
+ +GRTAL F A G+ K +++L + DL + RD G L + +AA Y + + L++
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 269 ETHGVDI 275
G DI
Sbjct: 133 --LGADI 137
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 188 DEGTCLVDNLASIVVPEALARQNRHGRTALHF-CA-AKGNLKAIKVLMKYKPDLTNVRDN 245
D TCL+D L + V E A ++++ RT F C A N K+ + + +Y+ + V+D+
Sbjct: 47 DGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 246 E 246
+
Sbjct: 107 D 107
>pdb|3V5S|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM METHANOCOCCUS
JANNASCHII
pdb|3V5U|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM
METHANOCALDOCOCCUS Jannaschii Dsm 2661
Length = 320
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 279 NDGALVLANLIHARLYDV--ALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLG 336
N G +VL N+I + + D+ AL + L + +N+ +V+ +L Y FA S++G
Sbjct: 224 NLGGMVLGNVIGSNIADIGGALAVGSLFMHLPAENVQMAVLVIMSLLL--YLFAKYSKIG 281
Query: 337 RLQRLIY 343
R Q +++
Sbjct: 282 RWQGILF 288
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 212 HGRTALHFCAAKGNLKAIKVLMKYKPDL------TNVRDNEGT------LPVQLAALYGH 259
G +ALH K +L+ +K+L++ D+ + ++GT LP+ LAA
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 260 KDTFQYLLKETH 271
D YLL+ H
Sbjct: 149 WDVVTYLLENPH 160
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 188 DEGTCLVDNLASIVVPEALARQNRHGRTALHF-CA-AKGNLKAIKVLMKYKPDLTNVRDN 245
D TCL+D L + EA A ++++ RT F C A N K+ + + +Y+ + V+D+
Sbjct: 47 DGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 246 E 246
+
Sbjct: 107 D 107
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 212 HGRTALHFCAAKGNLKAIKVLMKYKPDL------TNVRDNEGT------LPVQLAALYGH 259
G +ALH K +L+ +K+L++ D+ + ++GT LP+ LAA
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 260 KDTFQYLLKETH 271
D YLL+ H
Sbjct: 162 WDVVTYLLENPH 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,388,355
Number of Sequences: 62578
Number of extensions: 922220
Number of successful extensions: 2497
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2236
Number of HSP's gapped (non-prelim): 215
length of query: 774
length of database: 14,973,337
effective HSP length: 106
effective length of query: 668
effective length of database: 8,340,069
effective search space: 5571166092
effective search space used: 5571166092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)