Query 004089
Match_columns 774
No_of_seqs 579 out of 4634
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 9.5E-55 3.3E-59 485.6 35.2 382 46-581 4-387 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.8E-54 1.3E-58 480.7 37.5 379 10-535 11-390 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 8.5E-40 2.9E-44 351.5 30.0 280 136-535 24-314 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-39 3.7E-44 352.1 30.3 278 137-531 24-322 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-39 4.5E-44 340.4 29.9 269 136-520 4-284 (285)
6 4g8k_A 2-5A-dependent ribonucl 100.0 3.1E-39 1.1E-43 347.1 28.3 239 53-320 22-278 (337)
7 3d9h_A CDNA FLJ77766, highly s 100.0 5.4E-39 1.8E-43 336.5 25.7 243 135-532 13-265 (285)
8 3utm_A Tankyrase-1; tankyrase, 100.0 2E-38 6.9E-43 342.1 28.7 315 86-534 12-351 (351)
9 2xai_A ASB-9, ankyrin repeat a 100.0 9.5E-39 3.3E-43 330.2 23.5 245 136-535 2-251 (261)
10 2fo1_E LIN-12 protein; beta-ba 100.0 1.8E-39 6E-44 353.8 17.5 308 56-535 37-359 (373)
11 2xai_A ASB-9, ankyrin repeat a 100.0 4.7E-38 1.6E-42 325.0 23.2 247 170-581 2-248 (261)
12 3d9h_A CDNA FLJ77766, highly s 100.0 2.5E-37 8.7E-42 323.7 24.4 258 97-509 14-276 (285)
13 2fo1_E LIN-12 protein; beta-ba 100.0 2E-38 6.9E-43 345.4 16.4 280 58-509 68-369 (373)
14 1wdy_A 2-5A-dependent ribonucl 100.0 2.5E-36 8.4E-41 315.5 28.1 263 11-312 3-283 (285)
15 3ljn_A Hypothetical protein; a 100.0 2E-37 6.9E-42 336.7 20.3 250 134-535 17-302 (364)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 6.3E-37 2.2E-41 315.0 22.9 225 136-509 9-246 (253)
17 3b7b_A Euchromatic histone-lys 100.0 1.3E-36 4.4E-41 309.2 24.5 221 162-535 2-223 (237)
18 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-36 5.3E-41 309.2 21.6 226 134-509 6-239 (241)
19 3aji_A 26S proteasome non-ATPa 100.0 4.2E-36 1.4E-40 304.1 23.7 224 136-509 5-228 (231)
20 1yyh_A HN1;, notch 1, ankyrin 100.0 1.3E-36 4.3E-41 312.7 19.1 240 48-305 2-247 (253)
21 3ljn_A Hypothetical protein; a 100.0 2.2E-36 7.6E-41 328.5 21.7 214 88-323 10-252 (364)
22 1oy3_D Transcription factor in 100.0 3.7E-36 1.3E-40 314.1 22.4 254 164-535 2-271 (282)
23 1k1a_A B-cell lymphoma 3-encod 100.0 9E-36 3.1E-40 303.6 23.9 219 164-535 2-229 (241)
24 4b93_B Ankyrin repeat domain-c 100.0 2.5E-36 8.6E-41 312.7 16.4 237 134-524 8-251 (269)
25 3b7b_A Euchromatic histone-lys 100.0 3.8E-35 1.3E-39 298.3 23.9 228 48-302 3-231 (237)
26 1s70_B 130 kDa myosin-binding 100.0 7.5E-36 2.6E-40 314.8 19.1 264 143-532 4-275 (299)
27 2dzn_A Probable 26S proteasome 100.0 6E-35 2.1E-39 294.9 23.7 159 137-304 2-163 (228)
28 2dzn_A Probable 26S proteasome 100.0 1.1E-34 3.8E-39 292.9 24.2 211 171-533 2-219 (228)
29 1oy3_D Transcription factor in 100.0 2.6E-34 8.7E-39 300.1 22.5 221 91-326 2-269 (282)
30 4b93_B Ankyrin repeat domain-c 100.0 8E-35 2.7E-39 301.5 16.5 221 93-326 6-229 (269)
31 3kea_A K1L; tropism, ANK repea 100.0 6.8E-34 2.3E-38 297.6 22.6 225 146-535 8-234 (285)
32 3eu9_A Huntingtin-interacting 100.0 1.4E-33 4.7E-38 286.8 23.7 232 164-509 2-233 (240)
33 3aji_A 26S proteasome non-ATPa 100.0 1.1E-33 3.7E-38 286.3 21.3 225 54-306 4-230 (231)
34 1sw6_A Regulatory protein SWI6 100.0 4.5E-35 1.5E-39 312.9 10.3 297 54-533 21-327 (327)
35 2f8y_A Notch homolog 1, transl 100.0 1.6E-33 5.5E-38 283.4 20.8 212 148-509 2-214 (223)
36 3kea_A K1L; tropism, ANK repea 100.0 7.7E-34 2.6E-38 297.2 18.6 169 133-317 27-196 (285)
37 3eu9_A Huntingtin-interacting 100.0 2.7E-33 9.3E-38 284.6 22.1 231 50-307 3-236 (240)
38 1s70_B 130 kDa myosin-binding 100.0 2.1E-33 7.2E-38 296.1 19.3 279 103-507 4-285 (299)
39 2f8y_A Notch homolog 1, transl 100.0 1.3E-32 4.5E-37 276.7 20.9 213 78-308 4-218 (223)
40 1ikn_D Protein (I-kappa-B-alph 100.0 3.2E-33 1.1E-37 284.0 12.4 222 165-534 2-231 (236)
41 2rfa_A Transient receptor pote 100.0 8.8E-32 3E-36 272.5 22.9 162 136-308 2-185 (232)
42 2rfa_A Transient receptor pote 100.0 1.7E-31 5.7E-36 270.4 21.4 146 170-326 2-165 (232)
43 4gpm_A Engineered protein OR26 100.0 3.5E-31 1.2E-35 253.3 19.2 158 139-308 6-163 (169)
44 1ikn_D Protein (I-kappa-B-alph 100.0 9.2E-32 3.1E-36 273.2 15.6 220 51-324 3-228 (236)
45 3hra_A Ankyrin repeat family p 100.0 1E-30 3.6E-35 258.2 22.4 180 136-326 4-189 (201)
46 2pnn_A Transient receptor pote 100.0 1.6E-31 5.5E-36 277.9 16.7 223 87-320 2-272 (273)
47 3hra_A Ankyrin repeat family p 100.0 1.4E-30 4.8E-35 257.3 21.9 197 169-509 3-201 (201)
48 1sw6_A Regulatory protein SWI6 100.0 6.3E-32 2.2E-36 288.5 12.7 242 46-326 42-327 (327)
49 2pnn_A Transient receptor pote 100.0 7.3E-31 2.5E-35 272.9 16.0 165 133-308 9-220 (273)
50 2etb_A Transient receptor pote 100.0 5.5E-31 1.9E-35 271.0 13.8 160 137-307 2-207 (256)
51 2etb_A Transient receptor pote 100.0 2E-30 6.8E-35 266.8 13.7 198 98-307 2-247 (256)
52 3jxi_A Vanilloid receptor-rela 100.0 5.7E-30 2E-34 264.0 14.8 201 97-308 4-252 (260)
53 4gpm_A Engineered protein OR26 100.0 4.6E-29 1.6E-33 238.5 19.0 162 96-275 3-164 (169)
54 3jxi_A Vanilloid receptor-rela 100.0 8E-30 2.7E-34 262.9 14.2 164 136-308 4-212 (260)
55 3v30_A DNA-binding protein rfx 100.0 2.3E-29 7.7E-34 242.2 16.3 170 137-318 2-171 (172)
56 3v31_A Ankyrin repeat family A 100.0 5.4E-28 1.8E-32 231.3 17.0 161 136-308 2-162 (167)
57 3f6q_A Integrin-linked protein 100.0 7.9E-28 2.7E-32 233.1 17.6 162 136-308 4-165 (179)
58 2rfm_A Putative ankyrin repeat 100.0 6.3E-28 2.1E-32 236.6 17.0 159 134-304 32-190 (192)
59 4hbd_A KN motif and ankyrin re 100.0 6.3E-28 2.1E-32 251.0 17.8 194 101-305 80-274 (276)
60 3twr_A Tankyrase-2; ankyrin re 100.0 5.6E-28 1.9E-32 230.7 14.6 159 135-305 6-164 (165)
61 2y1l_E Darpin-8.4; hydrolase-i 100.0 2E-27 6.7E-32 227.9 18.4 158 135-304 12-169 (169)
62 4hbd_A KN motif and ankyrin re 100.0 4.5E-28 1.5E-32 252.0 14.8 193 171-509 76-273 (276)
63 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.2E-27 7.4E-32 225.7 17.7 157 137-306 5-162 (162)
64 2aja_A Ankyrin repeat family p 99.9 3.4E-30 1.1E-34 278.0 -2.2 282 101-536 69-363 (376)
65 1bd8_A P19INK4D CDK4/6 inhibit 99.9 8E-27 2.7E-31 220.4 18.1 154 137-303 2-155 (156)
66 3v30_A DNA-binding protein rfx 99.9 5.8E-27 2E-31 225.3 16.9 170 213-525 2-171 (172)
67 2vge_A RELA-associated inhibit 99.9 1.3E-28 4.5E-33 248.4 4.9 202 194-539 1-205 (229)
68 1awc_B Protein (GA binding pro 99.9 1.2E-26 4.1E-31 218.5 17.2 150 138-300 3-152 (153)
69 2rfm_A Putative ankyrin repeat 99.9 1.1E-26 3.9E-31 227.6 17.6 153 163-327 27-179 (192)
70 2vge_A RELA-associated inhibit 99.9 4.3E-29 1.5E-33 252.0 -0.2 187 126-327 10-200 (229)
71 3v31_A Ankyrin repeat family A 99.9 2.8E-26 9.6E-31 219.3 18.5 145 170-326 2-146 (167)
72 2aja_A Ankyrin repeat family p 99.9 1.2E-28 4.1E-33 265.9 -1.4 196 56-296 65-269 (376)
73 1ihb_A P18-INK4C(INK6), cyclin 99.9 8.9E-26 3E-30 214.5 16.7 158 97-272 5-162 (162)
74 1awc_B Protein (GA binding pro 99.9 3.4E-25 1.2E-29 208.5 18.0 150 98-266 3-152 (153)
75 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.9E-25 1.3E-29 211.9 18.0 147 169-327 12-158 (169)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.1E-27 2.4E-31 237.6 5.8 179 136-327 4-193 (239)
77 3f6q_A Integrin-linked protein 99.9 2.9E-25 9.8E-30 215.0 16.2 169 211-522 3-171 (179)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-25 3.9E-30 228.7 11.1 181 210-535 2-194 (239)
79 1d9s_A Cyclin-dependent kinase 99.9 3.5E-25 1.2E-29 203.9 12.8 134 161-306 2-136 (136)
80 3twr_A Tankyrase-2; ankyrin re 99.9 1.1E-24 3.6E-29 207.8 14.9 159 95-271 5-164 (165)
81 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.2E-24 1.1E-28 202.4 17.0 153 98-269 3-155 (156)
82 3t8k_A Uncharacterized protein 99.9 1.6E-25 5.6E-30 217.6 8.3 156 137-306 6-179 (186)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 7.4E-25 2.5E-29 206.9 10.4 146 165-323 6-152 (156)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 3.9E-24 1.3E-28 201.9 12.7 142 134-288 9-151 (156)
85 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7E-23 2.4E-27 185.2 15.1 126 170-306 1-126 (126)
86 1d9s_A Cyclin-dependent kinase 99.9 5.3E-23 1.8E-27 189.3 13.6 127 134-272 9-136 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.4E-22 4.8E-27 183.2 15.6 126 136-272 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 4.7E-23 1.6E-27 189.6 12.6 125 169-304 12-136 (136)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 9.1E-23 3.1E-27 187.7 13.9 124 136-270 13-136 (136)
90 3t8k_A Uncharacterized protein 99.9 1.7E-23 5.9E-28 203.3 9.1 156 101-274 10-181 (186)
91 3c5r_A BARD-1, BRCA1-associate 99.9 3.4E-23 1.2E-27 190.8 9.5 133 161-305 1-133 (137)
92 3deo_A Signal recognition part 99.9 2.7E-22 9.1E-27 194.8 13.8 138 136-303 43-181 (183)
93 3deo_A Signal recognition part 99.9 1.6E-23 5.6E-28 203.4 4.5 135 187-326 10-154 (183)
94 2b0o_E UPLC1; arfgap, structur 99.9 5.6E-22 1.9E-26 208.2 16.1 140 137-294 151-299 (301)
95 3ui2_A Signal recognition part 99.9 3.4E-22 1.2E-26 203.6 13.8 141 136-306 44-185 (244)
96 3ui2_A Signal recognition part 99.9 1.8E-23 6E-28 213.1 3.8 141 170-326 14-155 (244)
97 3c5r_A BARD-1, BRCA1-associate 99.9 3.1E-22 1.1E-26 184.3 7.6 129 132-271 5-133 (137)
98 3aaa_C Myotrophin, protein V-1 99.9 1.1E-21 3.8E-26 177.0 10.5 119 168-297 4-122 (123)
99 3ehr_A Osteoclast-stimulating 99.9 5.2E-22 1.8E-26 199.1 9.1 136 167-314 69-205 (222)
100 3aaa_C Myotrophin, protein V-1 99.8 2.5E-21 8.6E-26 174.6 9.8 116 136-262 6-121 (123)
101 2b0o_E UPLC1; arfgap, structur 99.8 2.4E-21 8.2E-26 203.3 10.5 139 171-327 151-298 (301)
102 1dcq_A PYK2-associated protein 99.8 4.1E-20 1.4E-24 191.7 17.8 126 137-273 130-264 (278)
103 3ehr_A Osteoclast-stimulating 99.8 2.6E-21 9E-26 194.0 8.5 129 136-275 72-201 (222)
104 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-19 5.8E-24 203.4 17.6 137 137-291 132-277 (497)
105 3jue_A Arfgap with coiled-coil 99.8 9.2E-20 3.1E-24 195.7 13.5 122 138-270 200-324 (368)
106 3jue_A Arfgap with coiled-coil 99.8 1.2E-19 4E-24 194.8 13.2 147 169-326 197-348 (368)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.7E-19 5.7E-24 153.8 11.3 91 171-271 2-92 (93)
108 1dcq_A PYK2-associated protein 99.8 1.6E-19 5.5E-24 187.2 13.1 125 172-307 131-264 (278)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.7E-19 1.2E-23 151.6 11.6 93 212-306 1-93 (93)
110 3lvq_E ARF-GAP with SH3 domain 99.8 2.6E-19 8.8E-24 201.9 12.9 136 172-325 133-277 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 4.5E-19 1.5E-23 157.6 7.5 107 167-284 5-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 6.4E-19 2.2E-23 156.6 8.2 109 208-319 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1E-16 3.5E-21 141.1 9.0 93 164-266 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2.4E-16 8.2E-21 138.7 9.8 95 204-300 15-109 (110)
115 4dve_A Biotin transporter BIOY 44.0 1.4E+02 0.0049 27.7 10.1 21 601-621 24-44 (198)
116 4ev6_A Magnesium transport pro 33.8 37 0.0013 34.8 4.9 21 683-703 281-301 (339)
117 2iub_A CORA, divalent cation t 31.6 37 0.0013 35.2 4.4 21 683-703 305-325 (363)
118 3gvo_A Pumilio 2, pumilio homo 26.5 1.1E+02 0.0038 31.2 7.1 190 101-303 41-239 (351)
119 3gvo_A Pumilio 2, pumilio homo 22.2 1.9E+02 0.0066 29.4 7.9 189 94-295 69-267 (351)
120 3rhw_A Avermectin-sensitive gl 21.1 4.2E+02 0.014 26.8 10.2 45 693-737 256-300 (347)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.5e-55 Score=485.60 Aligned_cols=382 Identities=15% Similarity=0.058 Sum_probs=317.3
Q ss_pred hhhccccccCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcc
Q 004089 46 SKDAQKNEYYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAK 124 (774)
Q Consensus 46 ~~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~ 124 (774)
+.+++..|..|.||||+|+..|+ .+.+++|+++|++++..+..+.| ||+|+..|+.++++.|++.+.
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--- 71 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGH---------LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA--- 71 (437)
T ss_dssp -----------CCHHHHHHHHTC---------HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC---
T ss_pred CCCccccCCCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC---
Confidence 45677889999999999999999 99999999999999999988877 999999999999999996543
Q ss_pred cCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcc
Q 004089 125 SSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPE 204 (774)
Q Consensus 125 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~ 204 (774)
+.+. .+..|+||||+|+..|+.+++++|++. +++++..+..|.||||+ |+. .|+ .+++++|++.+ +
T Consensus 72 -~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~~--~ 137 (437)
T 1n11_A 72 -KVNA---KAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHI-AAR-----EGH-VETVLALLEKE--A 137 (437)
T ss_dssp -CSSC---CCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHH-HHH-----HTC-HHHHHHHHHTT--C
T ss_pred -CCCC---CCCCCCCHHHHHHHCCCHHHHHHHHhC-CCCCCCCCCCCCcHHHH-HHH-----cCC-HHHHHHHHhCC--C
Confidence 3322 234589999999999999999977754 88999999999999999 999 999 99999999999 8
Q ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchH
Q 004089 205 ALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALV 284 (774)
Q Consensus 205 ~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 284 (774)
+.+..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++ ..+.+|.||
T Consensus 138 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~ 215 (437)
T 1n11_A 138 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTP 215 (437)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCH
T ss_pred CCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCH
Confidence 8889999999999999999999999999999999 89999999999999999999999999999999988 588999999
Q ss_pred HHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCccc
Q 004089 285 LANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETV 364 (774)
Q Consensus 285 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 364 (774)
||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++ ...++.++....
T Consensus 216 L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~~~------------------ 269 (437)
T 1n11_A 216 LHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGH-------AEMVALLLSKQA------------------ 269 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTC-------HHHHHHHHTTTC------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCC-------HHHHHHHHhcCC------------------
Confidence 999999999999999999999987 789999999999999874 233333332211
Q ss_pred ccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccC
Q 004089 365 DRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWT 444 (774)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 444 (774)
..
T Consensus 270 ------------------------------------------------------------------------------~~ 271 (437)
T 1n11_A 270 ------------------------------------------------------------------------------NG 271 (437)
T ss_dssp ------------------------------------------------------------------------------CT
T ss_pred ------------------------------------------------------------------------------CC
Confidence 11
Q ss_pred CccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCc
Q 004089 445 NPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNN 524 (774)
Q Consensus 445 ~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~T 524 (774)
+.. ...|.||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+.+|+.++|++|++.+ .++|.+|..|+|
T Consensus 272 ~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---ad~n~~~~~g~t 346 (437)
T 1n11_A 272 NLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ---ADVNAKTKLGYS 346 (437)
T ss_dssp TCC-CTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT---CCTTCCCTTSCC
T ss_pred CCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC---CCCCCCCCCCCC
Confidence 100 01578899999999999999988888776 7788888999999999999999999998887 788888888999
Q ss_pred hhhhhhccCCCCCCcchHHhhHHHHhHHHhhhhcC-CCcchhhhhhcCCChhhhhhHh
Q 004089 525 ILHLAGRLVPSSEVAGAALQMQRELQWFKMVENLV-HPSDREAENKLRQTPREVFTQE 581 (774)
Q Consensus 525 pLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~N~~G~Tp~dl~~~~ 581 (774)
|||+|++.|+.+ .|+.++ .+.+.+.+|++|+||++++.+.
T Consensus 347 ~L~~A~~~g~~~-----------------iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 387 (437)
T 1n11_A 347 PLHQAAQQGHTD-----------------IVTLLLKNGASPNEVSSDGTTPLAIAKRL 387 (437)
T ss_dssp HHHHHHHTTCHH-----------------HHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred HHHHHHHCChHH-----------------HHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence 999999888742 122222 3455777888899998887654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-54 Score=480.74 Aligned_cols=379 Identities=13% Similarity=0.027 Sum_probs=335.9
Q ss_pred chhhhHHHHHHHhCCChhhhHhhhcccchhhHHHhhhhhccccccCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCC
Q 004089 10 REDQTNVFRMVRRNKNEDQITVMEPNISKQTKEAWRSKDAQKNEYYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDA 89 (774)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~ 89 (774)
.+.+.++||+|++.++.++++.+.+. ..+++..|..|.||||+|+..++ .+++++|++.|+
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~----------g~~~~~~~~~~~t~L~~A~~~g~---------~~~v~~Ll~~g~ 71 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIVKNLLQR----------GASPNVSNVKVETPLHMAARAGH---------TEVAKYLLQNKA 71 (437)
T ss_dssp ----CCHHHHHHHHTCHHHHHHHHHT----------TCCSCCSSSCCCCHHHHHHHHTC---------HHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHc----------CCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhCCC
Confidence 45667899999999999999998754 45778889999999999999999 999999999999
Q ss_pred CCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCcccccc
Q 004089 90 QGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKI 168 (774)
Q Consensus 90 d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~ 168 (774)
+++.++..|.| ||+|+..|+.++++.|++.+. +.+. .+..|.||||+|+..|+.++++.|++ .+.+.+..+
T Consensus 72 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~ 143 (437)
T 1n11_A 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA----NPNL---ATTAGHTPLHIAAREGHVETVLALLE-KEASQACMT 143 (437)
T ss_dssp CSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC----CTTC---CCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC----CCCC---CCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCcCCC
Confidence 99999999988 999999999999999996643 3222 23458999999999999999998775 567888888
Q ss_pred CCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCC
Q 004089 169 DGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGT 248 (774)
Q Consensus 169 ~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~ 248 (774)
..|.||||+ |+. .|+ .+++++|++.| ++++..+..|.||||+|+..|+.+++++|++++++ ++..+..|.
T Consensus 144 ~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 213 (437)
T 1n11_A 144 KKGFTPLHV-AAK-----YGK-VRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGY 213 (437)
T ss_dssp TTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCC
T ss_pred CCCCCHHHH-HHH-----cCC-HHHHHHHHhCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCC
Confidence 999999999 999 999 99999999999 99999999999999999999999999999999999 799999999
Q ss_pred cHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCC
Q 004089 249 LPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYA 328 (774)
Q Consensus 249 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~ 328 (774)
||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++++++.+ ..|..|+||||+|+..++
T Consensus 214 t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~- 290 (437)
T 1n11_A 214 TPLHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGH- 290 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCC-
Confidence 99999999999999999999999998 589999999999999999999999999999987 899999999999998773
Q ss_pred cCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHH
Q 004089 329 FASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWN 408 (774)
Q Consensus 329 ~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (774)
...++.++.+.
T Consensus 291 ------~~~~~~Ll~~g--------------------------------------------------------------- 301 (437)
T 1n11_A 291 ------VPVADVLIKHG--------------------------------------------------------------- 301 (437)
T ss_dssp ------HHHHHHHHHHT---------------------------------------------------------------
T ss_pred ------HHHHHHHHhCC---------------------------------------------------------------
Confidence 22333333222
Q ss_pred HHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCch
Q 004089 409 VLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHR 488 (774)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T 488 (774)
..+...+ ..|.||||.|+..|+.++|++|++.+.+ ++.+|..|+|
T Consensus 302 ------------------------------~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t 346 (437)
T 1n11_A 302 ------------------------------VMVDATT----RMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYS 346 (437)
T ss_dssp ------------------------------CCTTCCC----SSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred ------------------------------ccCCCCC----CCCCCHHHHHHHcCcHHHHHHHHhcCCC-CCCCCCCCCC
Confidence 1111111 2689999999999999999999999887 8899999999
Q ss_pred HHHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCCC
Q 004089 489 IFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVPS 535 (774)
Q Consensus 489 ~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~~ 535 (774)
|||+|+++|+.++|++|++.| ++++.+|.+|+||||+|++.|+.
T Consensus 347 ~L~~A~~~g~~~iv~~Ll~~g---a~~~~~~~~g~t~l~~A~~~g~~ 390 (437)
T 1n11_A 347 PLHQAAQQGHTDIVTLLLKNG---ASPNEVSSDGTTPLAIAKRLGYI 390 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT---CCSCCCCSSSCCHHHHHHHTTCH
T ss_pred HHHHHHHCChHHHHHHHHHCc---CCCCCCCCCCCCHHHHHHHcCcH
Confidence 999999999999999999998 89999999999999999999984
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=8.5e-40 Score=351.48 Aligned_cols=280 Identities=17% Similarity=0.103 Sum_probs=235.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCC-CCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCC
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDG-HKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGR 214 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~-g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~ 214 (774)
.|.|+||.|++.|+.++|+.||+ .|+++|.++.. |+||||+ |+. .|+ .++|++|+++| ++++.++..+.
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~-~Gadvn~~~~~~g~TpLh~-A~~-----~g~-~~iv~~Ll~~g--a~~~~~~~~~~ 93 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHN-AVQ-----MSR-EDIVELLLRHG--ADPVLRKKNGA 93 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTCC
T ss_pred CCChHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCcCHHHH-HHH-----cCC-HHHHHHHHHcC--CchhhhccCCC
Confidence 37899999999999999998875 48999988765 7999999 999 999 99999999999 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCcc---------ccCCCCchHH
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI---------YSGNDGALVL 285 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~---------~~~~~g~t~L 285 (774)
+|+|.++..+...++..+++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++++. ..+..|.|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L 172 (337)
T 4g8k_A 94 TPFILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 172 (337)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred chhHHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence 999999999999999999999999 899999999999999999999999999999988875 2355789999
Q ss_pred HHHHhhchHHHHHHHHhh-CCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCccc
Q 004089 286 ANLIHARLYDVALDLLKL-HPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETV 364 (774)
Q Consensus 286 h~A~~~~~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 364 (774)
|+|+..|+.+++++|+++ |++++ .+|..|+||+|.++..+... .
T Consensus 173 ~~A~~~g~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~---~------------------------------- 217 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDS---D------------------------------- 217 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTT---T-------------------------------
T ss_pred HHHHHCCCHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcc---c-------------------------------
Confidence 999999999999999964 78877 89999999999887654210 0
Q ss_pred ccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccC
Q 004089 365 DRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWT 444 (774)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 444 (774)
....+++|.....++...
T Consensus 218 --------------------------------------------------------------~~~i~~lLl~~gad~n~~ 235 (337)
T 4g8k_A 218 --------------------------------------------------------------VEAITHLLLDHGADVNVR 235 (337)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHTTCCTTCC
T ss_pred --------------------------------------------------------------HHHHHHHHHHCCCCCCCc
Confidence 011122222222111111
Q ss_pred CccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCc
Q 004089 445 NPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNN 524 (774)
Q Consensus 445 ~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~T 524 (774)
+ ..|.||||.|+..|+.++++.|++.....++.+|.+|+||||+|+++|+.++|++|++.| +++| +.|
T Consensus 236 d----~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G---Ad~n-----~~~ 303 (337)
T 4g8k_A 236 G----ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTD-----CGD 303 (337)
T ss_dssp C----GGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS---CSST-----TCC
T ss_pred C----CCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCC-----CCC
Confidence 1 268999999999999999999998766668999999999999999999999999999988 6555 456
Q ss_pred hhhhhhccCCC
Q 004089 525 ILHLAGRLVPS 535 (774)
Q Consensus 525 pLHlAa~~g~~ 535 (774)
|||+|++.|+.
T Consensus 304 ~L~~A~~~~~~ 314 (337)
T 4g8k_A 304 LVMTARRNYDH 314 (337)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHcCCH
Confidence 99999999985
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=352.08 Aligned_cols=278 Identities=13% Similarity=0.059 Sum_probs=215.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcH
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTA 216 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~Tp 216 (774)
|.++||.|+..|+.+.++.+|...+.+++.+|..|.||||+ |+. .|+ .++|++|+++| ++++.+|..|.||
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~ 94 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL-AAG-----YNR-VRIVQLLLQHG--ADVHAKDKGGLVP 94 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTCCCH
T ss_pred cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCccCCCCCcH
Confidence 56788888888888888777777777777777778888888 888 888 88888888887 7777778888888
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHH-------
Q 004089 217 LHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLI------- 289 (774)
Q Consensus 217 Lh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~------- 289 (774)
||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||+|+|+
T Consensus 95 L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 95 LHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHH
Confidence 8888888888888888888877 67777788888888888888888888888877777 47777777777654
Q ss_pred --------------hhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCC
Q 004089 290 --------------HARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPS 355 (774)
Q Consensus 290 --------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~ 355 (774)
..++.+.++.++....... ..+..|.||||+|+..+.. ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~t~L~~A~~~~~~----~~~-------------------- 227 (351)
T 3utm_A 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASLHP----KRK-------------------- 227 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTTCCCHHHHHHHCCST----THH--------------------
T ss_pred HHhhhcccHHHHHHHhccHHHHHHHHHhhcccc-cCCCCCCCHHHHHHHHhCc----cHH--------------------
Confidence 4455556666666554433 5778899999999987631 011
Q ss_pred CCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHH
Q 004089 356 IQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVR 435 (774)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 435 (774)
++++
T Consensus 228 ----------------------------------------------------------------------------~~~~ 231 (351)
T 3utm_A 228 ----------------------------------------------------------------------------QVAE 231 (351)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1222
Q ss_pred HHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccc
Q 004089 436 IICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLF 515 (774)
Q Consensus 436 ~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~ 515 (774)
.+.+.....+..+ ..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++.| +++
T Consensus 232 ~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~ 306 (351)
T 3utm_A 232 LLLRKGANVNEKN-KDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYG---SDP 306 (351)
T ss_dssp HHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCT
T ss_pred HHHHcCCCcCCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC---CCC
Confidence 2222222222111 2689999999999999999999998877 8899999999999999999999999999998 899
Q ss_pred cccccCCCchhhhhhc
Q 004089 516 SFRDFLGNNILHLAGR 531 (774)
Q Consensus 516 n~~D~~G~TpLHlAa~ 531 (774)
+.+|..|+||||+|..
T Consensus 307 ~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 307 SIISLQGFTAAQMGNE 322 (351)
T ss_dssp TCCCTTSCCHHHHSCH
T ss_pred CCcCCCCCChhhhhhH
Confidence 9999999999999954
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-39 Score=340.40 Aligned_cols=269 Identities=18% Similarity=0.137 Sum_probs=230.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccc-cCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCC
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDK-IDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGR 214 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~-~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~ 214 (774)
.|.||||.|++.|+.++++.|++ .+.+++.. +..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~ 73 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHN-AVQ-----MSR-EDIVELLLRHG--ADPVLRKKNGA 73 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTCC
T ss_pred ccchHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCcHHHH-HHH-----cCC-HHHHHHHHHcC--CCCcccCCCCC
Confidence 37799999999999999998875 46788877 6778999999 999 999 99999999999 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCcccc----------CCCCchH
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYS----------GNDGALV 284 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~----------~~~g~t~ 284 (774)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++. . +..|.||
T Consensus 74 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 74 TPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL-RRKTKEDQERLRKGGATA 151 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCCCHHHHHTTCCCCCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccc-ccccHHHHHhhccCCCcH
Confidence 999999999999999999999999 899999999999999999999999999999988884 4 7889999
Q ss_pred HHHHHhhchHHHHHHHHhh-CCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcc
Q 004089 285 LANLIHARLYDVALDLLKL-HPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDET 363 (774)
Q Consensus 285 Lh~A~~~~~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 363 (774)
||+|+..|+.+++++|++. +.+++ ..|..|+||||+|+..+....
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~--------------------------------- 197 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSD--------------------------------- 197 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTT---------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccch---------------------------------
Confidence 9999999999999999998 88776 889999999999998874200
Q ss_pred cccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhcccc
Q 004089 364 VDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIW 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 443 (774)
..++++.+.+....
T Consensus 198 ------------------------------------------------------------------~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 198 ------------------------------------------------------------------VEAITHLLLDHGAD 211 (285)
T ss_dssp ------------------------------------------------------------------HHHHHHHHHHTTCC
T ss_pred ------------------------------------------------------------------HHHHHHHHHHcCCC
Confidence 11122222222222
Q ss_pred CCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCccccccccccc
Q 004089 444 TNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDF 520 (774)
Q Consensus 444 ~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~ 520 (774)
.+..+ ..|.||||+|+..|+.+++++|++..+..++.+|..|+||||+|+++|+.+++++|++.| ++++.+|.
T Consensus 212 ~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G---a~~~~~d~ 284 (285)
T 1wdy_A 212 VNVRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTDCGDL 284 (285)
T ss_dssp SSCCC-TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---SCSCCSSC
T ss_pred CCCcC-CCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC---CCCCcccc
Confidence 22111 268999999999999999999999655558899999999999999999999999999999 78887773
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.1e-39 Score=347.09 Aligned_cols=239 Identities=18% Similarity=0.139 Sum_probs=203.1
Q ss_pred ccCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccch-hHH-HHHHHHhCCHHHHHHHHHHHHhcccCcccc
Q 004089 53 EYYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYDL-SWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQ 130 (774)
Q Consensus 53 d~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~-~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 130 (774)
+..|.||||.|+..++ .+++++|+++|+|+|.++.. |+| ||+|+..|+.++++.|++++. +.+.
T Consensus 22 ~~~~~t~L~~Av~~g~---------~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga----~~~~- 87 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNED---------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA----DPVL- 87 (337)
T ss_dssp HHHHHHHHHHHHHTTC---------HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTC-
T ss_pred CCCCChHHHHHHHcCC---------HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCC----chhh-
Confidence 3457899999999999 99999999999999998764 766 999999999999999996543 3332
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccc--
Q 004089 131 RDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALAR-- 208 (774)
Q Consensus 131 ~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~-- 208 (774)
.+..+.++++.++..++...+..++ ..+.+++.+|..|.||||+ |+. .|+ .+++++|+++| ++++.
T Consensus 88 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~t~l~~-A~~-----~~~-~~~~~~ll~~g--a~~~~~~ 155 (337)
T 4g8k_A 88 --RKKNGATPFILAAIAGSVKLLKLFL-SKGADVNECDFYGFTAFME-AAV-----YGK-VKALKFLYKRG--ANVNLRR 155 (337)
T ss_dssp --CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCBCTTCCBHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCC
T ss_pred --hccCCCchhHHHHhcccchhhHHhh-hccchhhhhccCCCCHHHH-HHH-----cCc-HHHHHHHHHcC--CCcchhh
Confidence 2345889999999999999999555 6688999999999999999 999 999 99999999999 66554
Q ss_pred --------ccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCcHHHHHHHhCC----hHHHHHHHhhcCCCcc
Q 004089 209 --------QNRHGRTALHFCAAKGNLKAIKVLMKY-KPDLTNVRDNEGTLPVQLAALYGH----KDTFQYLLKETHGVDI 275 (774)
Q Consensus 209 --------~~~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~l~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~ 275 (774)
.+..|.||||+|++.|+.+++++|+++ |++ ++.+|..|.||+|.++..++ .+++++|+++|++++
T Consensus 156 ~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n- 233 (337)
T 4g8k_A 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN- 233 (337)
T ss_dssp CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-
T ss_pred ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC-
Confidence 355689999999999999999999965 888 89999999999999887654 358899999999999
Q ss_pred ccCCCCchHHHHHHhhchHHHHHHHHhh-CCCCCccCCCCCCCHHH
Q 004089 276 YSGNDGALVLANLIHARLYDVALDLLKL-HPTIGRDNIDSRRIVLK 320 (774)
Q Consensus 276 ~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh 320 (774)
.++.+|+||||+|+..|+.++++.|++. +.+++ .+|.+|+||||
T Consensus 234 ~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn-~~d~~G~TpL~ 278 (337)
T 4g8k_A 234 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALL 278 (337)
T ss_dssp CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT-CBCTTSCBHHH
T ss_pred CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc-CcCCCCCCHHH
Confidence 5999999999999999999999999986 55554 45554444444
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-39 Score=336.48 Aligned_cols=243 Identities=15% Similarity=0.090 Sum_probs=196.1
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhhC----------CCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcc
Q 004089 135 YGRYWPLYKMTQKNDWRGVEDFVGEH----------PDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPE 204 (774)
Q Consensus 135 ~~g~t~Lh~Aa~~g~~~~v~~lL~~~----------~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~ 204 (774)
..|.|+||+|+..|+.+.+..++... ...++.+|..|+||||+ |+. .|+ .+++++|++.| +
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~-Aa~-----~g~-~~~v~~Ll~~g--~ 83 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHE-AAI-----HGH-QLSLRNLISQG--W 83 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHH-HHH-----TTC-HHHHHHHHHTT--C
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHH-HHH-----cCC-HHHHHHHHHCC--C
Confidence 45899999999999987777665442 23467788999999999 999 999 99999999999 9
Q ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchH
Q 004089 205 ALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALV 284 (774)
Q Consensus 205 ~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 284 (774)
+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ .+.+|.||
T Consensus 84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~ 160 (285)
T 3d9h_A 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASP 160 (285)
T ss_dssp CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCH
T ss_pred CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCH
Confidence 9999999999999999999999999999999999 89999999999999999999999999999998887 45669999
Q ss_pred HHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCccc
Q 004089 285 LANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETV 364 (774)
Q Consensus 285 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 364 (774)
||+|+..|+.+++++|++.|++++ .+|.+
T Consensus 161 L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~-------------------------------------------------- 189 (285)
T 3d9h_A 161 IHEAARRGHVECVNSLIAYGGNID-HKISH-------------------------------------------------- 189 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTT-CCBTT--------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCC-CcCCC--------------------------------------------------
Confidence 999999999999999999998876 44444
Q ss_pred ccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccC
Q 004089 365 DRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWT 444 (774)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 444 (774)
T Consensus 190 -------------------------------------------------------------------------------- 189 (285)
T 3d9h_A 190 -------------------------------------------------------------------------------- 189 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCc
Q 004089 445 NPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNN 524 (774)
Q Consensus 445 ~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~T 524 (774)
|.||||+|+..|+.+++++|++.+.+ ++ .|..|+||||+|+..|+.+++++|++.+ ++++.+|.+|+|
T Consensus 190 -------g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t 257 (285)
T 3d9h_A 190 -------LGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMDFG---ADTQAKNAEGKR 257 (285)
T ss_dssp -------TBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCC
T ss_pred -------CCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCC
Confidence 45566677777889999999999877 44 4889999999999999999999999988 889999999999
Q ss_pred hhhhhhcc
Q 004089 525 ILHLAGRL 532 (774)
Q Consensus 525 pLHlAa~~ 532 (774)
|||+|+..
T Consensus 258 ~l~~A~~~ 265 (285)
T 3d9h_A 258 PVELVPPE 265 (285)
T ss_dssp GGGGSCTT
T ss_pred HHHHhcCc
Confidence 99999954
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2e-38 Score=342.13 Aligned_cols=315 Identities=14% Similarity=0.028 Sum_probs=243.8
Q ss_pred hcCCCCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCcc
Q 004089 86 SKDAQGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDAL 164 (774)
Q Consensus 86 ~~g~d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~ 164 (774)
..+++.+..+..+.+ ||.|++.|+.+.++.++.. .+.+. ...+..|.||||+|+..|+.++++.|++ .|.++
T Consensus 12 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~---~~~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~ 84 (351)
T 3utm_A 12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP---LNVNC---HASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADV 84 (351)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCT---TTTTC---CCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred CCceeeeeeccccchhHHHHHHcCCHHHHHHHHHh---cCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCC
Confidence 334445556666766 9999999999999988832 11111 1234459999999999999999997775 58999
Q ss_pred ccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 004089 165 TDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRD 244 (774)
Q Consensus 165 ~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d 244 (774)
+.+|..|.||||+ |+. .|+ .+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++..+
T Consensus 85 ~~~~~~g~t~L~~-A~~-----~g~-~~iv~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~ 154 (351)
T 3utm_A 85 HAKDKGGLVPLHN-ACS-----YGH-YEVTELLLKHG--ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVN 154 (351)
T ss_dssp TCCCTTCCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred CccCCCCCcHHHH-HHH-----CCC-HHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-Ccccc
Confidence 9999999999999 999 999 99999999999 99999999999999999999999999999999999 89999
Q ss_pred cCCCcHHHHH---------------------HHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhh---chHHHHHHH
Q 004089 245 NEGTLPVQLA---------------------ALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHA---RLYDVALDL 300 (774)
Q Consensus 245 ~~g~tpL~~A---------------------~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~---~~~~iv~~L 300 (774)
..|.||+++| +..++.+.++.++....... ..+..|.||||+|+.. +..+++++|
T Consensus 155 ~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~t~L~~A~~~~~~~~~~~~~~L 233 (351)
T 3utm_A 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASLHPKRKQVAELL 233 (351)
T ss_dssp TTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTTCCCHHHHHHHCCSTTHHHHHHHH
T ss_pred CCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc-cCCCCCCCHHHHHHHHhCccHHHHHHHH
Confidence 9999998775 55677777777777654333 5778999999999999 678999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCC
Q 004089 301 LKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSK 380 (774)
Q Consensus 301 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 380 (774)
++.|++++ .+|.+|+||||+|+..++ ...++.++..+.
T Consensus 234 l~~g~~~~-~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~ga---------------------------------- 271 (351)
T 3utm_A 234 LRKGANVN-EKNKDFMTPLHVAAERAH-------NDVMEVLHKHGA---------------------------------- 271 (351)
T ss_dssp HHTTCCTT-CCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTC----------------------------------
T ss_pred HHcCCCcC-CcCCCCCCHHHHHHHcCC-------HHHHHHHHHCCC----------------------------------
Confidence 99999998 899999999999999884 223333332221
Q ss_pred CCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHH
Q 004089 381 KPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAA 460 (774)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa 460 (774)
++...+ ..|.||||+|+
T Consensus 272 -----------------------------------------------------------~~n~~d----~~g~t~L~~A~ 288 (351)
T 3utm_A 272 -----------------------------------------------------------KMNALD----SLGQTALHRAA 288 (351)
T ss_dssp -----------------------------------------------------------CTTCCC----TTSCCHHHHHH
T ss_pred -----------------------------------------------------------CCCCcC----CCCCCHHHHHH
Confidence 111111 26899999999
Q ss_pred HcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCC
Q 004089 461 RLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVP 534 (774)
Q Consensus 461 ~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~ 534 (774)
..|+.++|++|++.+.+ ++.+|..|+||+|+| +.+++++|.+.. .....++.++|..|++.|+
T Consensus 289 ~~~~~~~v~~Ll~~gad-~~~~~~~g~tal~~a----~~~~~~~l~~~~------~~~~~~~~~~l~~A~~~gd 351 (351)
T 3utm_A 289 LAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMG----NEAVQQILSEST------PMRTSDVDYRLLEASKAGD 351 (351)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHS----CHHHHHHHHHC--------------------------
T ss_pred HcCcHHHHHHHHHcCCC-CCCcCCCCCChhhhh----hHHHHHHHHhcc------ccccCcceeehhhhhccCC
Confidence 99999999999999887 889999999999998 678888888865 3456778999999999874
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9.5e-39 Score=330.19 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=216.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
+|+||||+|+..|+.++++.|++ .+.+++.+|..|.||||+ |+. .|+ .+++++|+++| ++++.+|..|.|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t 71 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHE-ACL-----GGH-LSCVKILLKHG--AQVNGVTADWHT 71 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTSCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHH-HHH-----cCC-HHHHHHHHHCC--CCCCCCCCCCCC
Confidence 48899999999999999997775 578999999999999999 999 999 99999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHH
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYD 295 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 295 (774)
|||+|+..|+.+++++|+++|++ ++. +.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+
T Consensus 72 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~ 148 (261)
T 2xai_A 72 PLFNACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRA 148 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-SSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHhCCHH
Confidence 99999999999999999999998 554 4569999999999999999999999999998 58999999999999999999
Q ss_pred HHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccc
Q 004089 296 VALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTS 375 (774)
Q Consensus 296 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (774)
++++|++.|++++ .|.
T Consensus 149 ~v~~Ll~~g~~~~--~~~-------------------------------------------------------------- 164 (261)
T 2xai_A 149 CVKKLLESGADVN--QGK-------------------------------------------------------------- 164 (261)
T ss_dssp HHHHHHHHTCCTT--CCB--------------------------------------------------------------
T ss_pred HHHHHHHcCCCCC--CCC--------------------------------------------------------------
Confidence 9999999998775 122
Q ss_pred cccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchH
Q 004089 376 KIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGA 455 (774)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tp 455 (774)
.|.||
T Consensus 165 ---------------------------------------------------------------------------~g~t~ 169 (261)
T 2xai_A 165 ---------------------------------------------------------------------------GQDSP 169 (261)
T ss_dssp ---------------------------------------------------------------------------TTBCH
T ss_pred ---------------------------------------------------------------------------CCCCh
Confidence 35567
Q ss_pred HHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcc-----cccccccccCCCchhhhhh
Q 004089 456 MFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFT-----TFLFSFRDFLGNNILHLAG 530 (774)
Q Consensus 456 Lh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~-----~~~~n~~D~~G~TpLHlAa 530 (774)
||.|+..|+.++++.|++.+.+ ++.+|.+|+||||+|+.++ +++++|++.+.. ...++.+|..|+||||+|+
T Consensus 170 Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~ 246 (261)
T 2xai_A 170 LHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKIT 246 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGG
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCc
Confidence 7788888899999999999887 8899999999999999665 589999987611 2467889999999999999
Q ss_pred ccCCC
Q 004089 531 RLVPS 535 (774)
Q Consensus 531 ~~g~~ 535 (774)
+...+
T Consensus 247 ~~~~p 251 (261)
T 2xai_A 247 KLVLP 251 (261)
T ss_dssp GSSSC
T ss_pred ccCCc
Confidence 98776
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-39 Score=353.82 Aligned_cols=308 Identities=12% Similarity=0.030 Sum_probs=220.0
Q ss_pred CCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccchhHHHHHHHHhCCHHHHHHHHHHHHhcccCccccccccC
Q 004089 56 GPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYDLSWTLCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYY 135 (774)
Q Consensus 56 g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~~~tL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~ 135 (774)
-.-+|+.++..++ .+....+.++...+..+ ...+.-+...|+.+.+..++. ...+.
T Consensus 37 ~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~------------~~~~~ 92 (373)
T 2fo1_E 37 SQHSLLEASYDGY---------IKRQRNELQHYSLYPNP---QGYGNGNDFLGDFNHTNLQIP------------TEPEP 92 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCcc---------ccchhhhhhhhccccCc---cccCCCCCccccccccccccc------------cCCCC
Confidence 3456777776666 44444454444443211 111455666778877776652 12344
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCcccccc-CCCCChHHHHHhccccccCCcHHHHHHHHH--------HccCcccc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKI-DGHKTIFHLIAMLLVDVESDEGTCLVDNLA--------SIVVPEAL 206 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~-~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll--------~~g~~~~~ 206 (774)
.|.||||.|+..|+ ++++.|+ ..+++.+| ..|+||||+ |+. .|+ .+++++|+ +.| +++
T Consensus 93 ~g~t~L~~Aa~~~~-~~~~~L~---~~~~n~~d~~~g~t~Lh~-Aa~-----~g~-~~~v~~Ll~~~~~~ll~~g--a~v 159 (373)
T 2fo1_E 93 ESPIKLHTEAAGSY-AITEPIT---RESVNIIDPRHNRTVLHW-IAS-----NSS-AEKSEDLIVHEAKECIAAG--ADV 159 (373)
T ss_dssp -CCCHHHHHHHSSS-CCCSCCS---TTTTTTCCCSSCCCHHHH-HHC-----TTC-CSCCTTHHHHHHHHHHHTC--CCT
T ss_pred CCccHHHHHhcCCc-hHHHHhc---cccccccCCcCCCCHHHH-HHH-----CCC-HHHHHHHHHHHHHHHHhcC--CCC
Confidence 58999999999665 7777554 25788888 689999999 999 999 98888776 788 999
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhc---CCCccccCCCCch
Q 004089 207 ARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKET---HGVDIYSGNDGAL 283 (774)
Q Consensus 207 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g~t 283 (774)
+.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+ ++++ ..+..|.|
T Consensus 160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t 237 (373)
T 2fo1_E 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMT 237 (373)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCC
T ss_pred cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCC
Confidence 99999999999999999999999999999999 8999999999999999999999999999987 6777 58999999
Q ss_pred HHHHHHhhc---hHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCC
Q 004089 284 VLANLIHAR---LYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTND 360 (774)
Q Consensus 284 ~Lh~A~~~~---~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 360 (774)
|||+|+..+ +.+++++|++.|++++. .+.. ...
T Consensus 238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~-~~~~---------~~~---------------------------------- 273 (373)
T 2fo1_E 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDY-DGAA---------RKD---------------------------------- 273 (373)
T ss_dssp HHHHHHHSCSTTHHHHHHHHHHHTCCSSC-CSGG---------GTS----------------------------------
T ss_pred HHHHHHHhCCcchHHHHHHHHHCCCCccc-cccc---------ccC----------------------------------
Confidence 999999998 89999999999988762 1100 000
Q ss_pred CcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 004089 361 DETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQG 440 (774)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 440 (774)
T Consensus 274 -------------------------------------------------------------------------------- 273 (373)
T 2fo1_E 274 -------------------------------------------------------------------------------- 273 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCccccccccccc
Q 004089 441 VIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDF 520 (774)
Q Consensus 441 ~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~ 520 (774)
.....|.||||.||..|+.++|++|++.++..++.+|..|+||||+|+.+|+.++|++|++.+ ++++.+|.
T Consensus 274 ------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~d~ 344 (373)
T 2fo1_E 274 ------SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDA 344 (373)
T ss_dssp ------SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCS
T ss_pred ------cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccCCCC
Confidence 000157889999999999999999999886668899999999999999999999999999988 88999999
Q ss_pred CCCchhhhhhccCCC
Q 004089 521 LGNNILHLAGRLVPS 535 (774)
Q Consensus 521 ~G~TpLHlAa~~g~~ 535 (774)
.|+||||+|+..|+.
T Consensus 345 ~g~t~l~~A~~~g~~ 359 (373)
T 2fo1_E 345 TDHTARQLAQANNHH 359 (373)
T ss_dssp SSCCHHHHHHHTTCH
T ss_pred CCCCHHHHHHHcCCH
Confidence 999999999999984
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.7e-38 Score=324.96 Aligned_cols=247 Identities=15% Similarity=0.107 Sum_probs=208.6
Q ss_pred CCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCc
Q 004089 170 GHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTL 249 (774)
Q Consensus 170 ~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~t 249 (774)
+|+||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.|
T Consensus 2 ~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t 71 (261)
T 2xai_A 2 SDWSPMHE-AAI-----HGH-QLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHT 71 (261)
T ss_dssp --CCHHHH-HHH-----HTC-HHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred CCCCHHHH-HHH-----cCC-HHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCC
Confidence 58999999 999 999 99999999999 99999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCc
Q 004089 250 PVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAF 329 (774)
Q Consensus 250 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~ 329 (774)
|||+|+..|+.+++++|+++|++++ .+.+|.||||+|+..|+.+++++|+++|++++ .+|.+
T Consensus 72 ~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~--------------- 133 (261)
T 2xai_A 72 PLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNID-HKISH--------------- 133 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTT---------------
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-cCCCC---------------
Confidence 9999999999999999999998887 46679999999999999999999999998876 34443
Q ss_pred CCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHH
Q 004089 330 ASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNV 409 (774)
Q Consensus 330 ~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (774)
T Consensus 134 -------------------------------------------------------------------------------- 133 (261)
T 2xai_A 134 -------------------------------------------------------------------------------- 133 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchH
Q 004089 410 LMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRI 489 (774)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~ 489 (774)
|.||||.|+..|+.+++++|++.+.+ ++ .|..|+||
T Consensus 134 ------------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~-~~~~g~t~ 169 (261)
T 2xai_A 134 ------------------------------------------LGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSP 169 (261)
T ss_dssp ------------------------------------------TBCHHHHHHHTTCHHHHHHHHHHTCC-TT-CCBTTBCH
T ss_pred ------------------------------------------CCCHHHHHHHhCCHHHHHHHHHcCCC-CC-CCCCCCCh
Confidence 45666677777889999999999887 44 38999999
Q ss_pred HHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCCCCCCcchHHhhHHHHhHHHhhhhcCCCcchhhhhh
Q 004089 490 FDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVPSSEVAGAALQMQRELQWFKMVENLVHPSDREAENK 569 (774)
Q Consensus 490 LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~~~~~~~~N~ 569 (774)
||+|++.|+.+++++|++.+ ++++.+|.+|+||||+|+..++. .++ +........+.......++|.
T Consensus 170 Lh~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~tpl~~A~~~~~~-------~~~---ll~~~~~~~l~~~~~~~~r~~ 236 (261)
T 2xai_A 170 LHAVARTASEELACLLMDFG---ADTQAKNAEGKRPVELVPPESPL-------AQL---FLEREGPPSLMQLCRLRIRKC 236 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCGGGGSCTTCTH-------HHH---HHHC-CCCCHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCChhhhccccccH-------HHH---HHhccCCccHHHHHHHHHHHH
Confidence 99999999999999999998 89999999999999999976542 110 000000000000124778999
Q ss_pred cCCChhhhhhHh
Q 004089 570 LRQTPREVFTQE 581 (774)
Q Consensus 570 ~G~Tp~dl~~~~ 581 (774)
.|+||++.+.+.
T Consensus 237 ~g~t~l~~~~~~ 248 (261)
T 2xai_A 237 FGIQQHHKITKL 248 (261)
T ss_dssp SCTTCGGGGGGS
T ss_pred hchhccccCccc
Confidence 999999987753
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=323.75 Aligned_cols=258 Identities=11% Similarity=0.051 Sum_probs=203.2
Q ss_pred hhHH-HHHHHHhCCHHHHHHHHHHHHhccc----CccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCC
Q 004089 97 LSWT-LCRMIEINDRQGAEDLVKEVKEAKS----SEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGH 171 (774)
Q Consensus 97 ~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~----~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g 171 (774)
.|.| ||+|+..|+.+.+..++........ -.......+..|+||||+||..|+.++++.|++ .+.+++.+|..|
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~g 92 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADH 92 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEECTTC
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCC
Confidence 3445 9999999998888777654322110 011223345569999999999999999998775 578999999999
Q ss_pred CChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHH
Q 004089 172 KTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPV 251 (774)
Q Consensus 172 ~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL 251 (774)
.||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.. ..|.|||
T Consensus 93 ~t~L~~-A~~-----~g~-~~~v~~Ll~~g--a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~-~~g~t~L 161 (285)
T 3d9h_A 93 VSPLHE-ACL-----GGH-LSCVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPE-SDLASPI 161 (285)
T ss_dssp CCHHHH-HHH-----TTC-HHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCS-CTTSCHH
T ss_pred CCHHHH-HHH-----CCc-HHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCCC-CCCCCHH
Confidence 999999 999 999 99999999999 99999999999999999999999999999999998 5644 4599999
Q ss_pred HHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCC
Q 004089 252 QLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFAS 331 (774)
Q Consensus 252 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s 331 (774)
|+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|++++ .|.
T Consensus 162 ~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~------------------ 220 (285)
T 3d9h_A 162 HEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGADVN--QGK------------------ 220 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCB------------------
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCC------------------
Confidence 99999999999999999999999 599999999999999999999999999998775 233
Q ss_pred CCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHh
Q 004089 332 GSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLM 411 (774)
Q Consensus 332 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (774)
T Consensus 221 -------------------------------------------------------------------------------- 220 (285)
T 3d9h_A 221 -------------------------------------------------------------------------------- 220 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHH
Q 004089 412 RLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFD 491 (774)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH 491 (774)
.|.||||+|+..|+.+++++|++.+.+ ++.+|.+|+||||
T Consensus 221 ---------------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~ 260 (285)
T 3d9h_A 221 ---------------------------------------GQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVE 260 (285)
T ss_dssp ---------------------------------------TTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGG
T ss_pred ---------------------------------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHH
Confidence 355677777788889999999998877 8899999999999
Q ss_pred HHHhcCchHHHHHHHhcC
Q 004089 492 LAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 492 ~A~~~g~~~iv~~Ll~~~ 509 (774)
+|+ ++.+++++|++..
T Consensus 261 ~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 261 LVP--PESPLAQLFLERE 276 (285)
T ss_dssp GSC--TTSHHHHHHHHHC
T ss_pred Hhc--CccHHHHHHHHhh
Confidence 999 4568999999974
No 13
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2e-38 Score=345.44 Aligned_cols=280 Identities=15% Similarity=0.056 Sum_probs=220.3
Q ss_pred chhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCC
Q 004089 58 YCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYG 136 (774)
Q Consensus 58 t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~ 136 (774)
+++.-+...++ .+..++++.. .++..|.| ||+|+..+. ++++.|+ ..+.+..++..
T Consensus 68 ~~~~~~~~~g~---------~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~-~~~~~L~--------~~~~n~~d~~~ 124 (373)
T 2fo1_E 68 GYGNGNDFLGD---------FNHTNLQIPT-----EPEPESPIKLHTEAAGSY-AITEPIT--------RESVNIIDPRH 124 (373)
T ss_dssp ----------------------------------------CCCHHHHHHHSSS-CCCSCCS--------TTTTTTCCCSS
T ss_pred ccCCCCCcccc---------cccccccccc-----CCCCCCccHHHHHhcCCc-hHHHHhc--------cccccccCCcC
Confidence 45555666666 5556555443 33455556 999999554 5555554 22333333356
Q ss_pred CchHHHHHHHcCCHHHHHHHHh-------hCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccc
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVG-------EHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQ 209 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~-------~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~ 209 (774)
|+||||+||..|+.++++.|+. +.|+++|.+|..|.||||+ |+. .|+ .++|++|+++| ++++.+
T Consensus 125 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~-A~~-----~g~-~~iv~~Ll~~g--a~~~~~ 195 (373)
T 2fo1_E 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML-AVL-----ARR-RRLVAYLMKAG--ADPTIY 195 (373)
T ss_dssp CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCSCCC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHH-HHH-----cCh-HHHHHHHHHCC--CCCccc
Confidence 9999999999999998887764 6899999999999999999 999 999 99999999999 999999
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCccccccCCCcHHHHHHHhC---ChHHHHHHHhhcCCCcc-------c
Q 004089 210 NRHGRTALHFCAAKGNLKAIKVLMKYK---PDLTNVRDNEGTLPVQLAALYG---HKDTFQYLLKETHGVDI-------Y 276 (774)
Q Consensus 210 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~---~~l~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~~~~-------~ 276 (774)
|..|.||||+|+..|+.+++++|++++ .+ ++..|..|.||||+|+..| +.+++++|+++|++++. .
T Consensus 196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 274 (373)
T 2fo1_E 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274 (373)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHhcCccccC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence 999999999999999999999999987 67 7999999999999999998 89999999999998873 2
Q ss_pred cCCCCchHHHHHHhhchHHHHHHHHhhC-CCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCC
Q 004089 277 SGNDGALVLANLIHARLYDVALDLLKLH-PTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPS 355 (774)
Q Consensus 277 ~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~-~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~ 355 (774)
.+..|.||||+|+..|+.+++++|++.+ .+++ .+|.+
T Consensus 275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n-~~d~~----------------------------------------- 312 (373)
T 2fo1_E 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-KQDED----------------------------------------- 312 (373)
T ss_dssp SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT-CCCTT-----------------------------------------
T ss_pred ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc-CcCCC-----------------------------------------
Confidence 5678999999999999999999999987 5554 44444
Q ss_pred CCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHH
Q 004089 356 IQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVR 435 (774)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 435 (774)
T Consensus 313 -------------------------------------------------------------------------------- 312 (373)
T 2fo1_E 313 -------------------------------------------------------------------------------- 312 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcC
Q 004089 436 IICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 436 ~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~ 509 (774)
|.||||+|+..|+.++|++|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++.+
T Consensus 313 ----------------g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 313 ----------------GKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp ----------------CCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred ----------------CCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 44566677777889999999999877 8899999999999999999999999999987
No 14
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-36 Score=315.49 Aligned_cols=263 Identities=15% Similarity=0.074 Sum_probs=235.8
Q ss_pred hhhhHHHHHHHhCCChhhhHhhhcccchhhHHHhhhhhcccc-ccCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCC
Q 004089 11 EDQTNVFRMVRRNKNEDQITVMEPNISKQTKEAWRSKDAQKN-EYYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDA 89 (774)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~ 89 (774)
.++.++|+.|++.++.+.++.+.+. ..+++.. +..|.||||+|+..++ .+++++|++.|+
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~----------g~~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~ 63 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEG----------GANVNFQEEEGGWTPLHNAVQMSR---------EDIVELLLRHGA 63 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT----------TCCTTCCCTTTCCCHHHHHHHTTC---------HHHHHHHHHTTC
T ss_pred cccchHHHHHHHcCCHHHHHHHHHc----------CCCcccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCC
Confidence 4577899999999999999988654 3345555 7789999999999999 999999999999
Q ss_pred CCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccc-
Q 004089 90 QGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDK- 167 (774)
Q Consensus 90 d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~- 167 (774)
+++.++..|.| ||+|+..|+.++++.|++.+. +.+. .+..|.||||+|+..|+.++++.|++ .+.+++.+
T Consensus 64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~ 135 (285)
T 1wdy_A 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA----DVNE---CDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRR 135 (285)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CTTC---BCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCC
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCc---cCcccCCHHHHHHHhCCHHHHHHHHH-hCCCccccc
Confidence 99999999987 999999999999999996432 3222 24459999999999999999997774 57778776
Q ss_pred ---------cCCCCChHHHHHhccccccCCcHHHHHHHHHHc-cCccccccccCCCCcHHHHHHHcCC----HHHHHHHH
Q 004089 168 ---------IDGHKTIFHLIAMLLVDVESDEGTCLVDNLASI-VVPEALARQNRHGRTALHFCAAKGN----LKAIKVLM 233 (774)
Q Consensus 168 ---------~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~-g~~~~~~~~~~~g~TpLh~A~~~g~----~~iv~~Ll 233 (774)
+..|.||||+ |+. .|+ .+++++|++. | ++++.+|..|.||||+|+..|+ .+++++|+
T Consensus 136 ~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll 206 (285)
T 1wdy_A 136 KTKEDQERLRKGGATALMD-AAE-----KGH-VEVLKILLDEMG--ADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206 (285)
T ss_dssp CCCHHHHHTTCCCCCHHHH-HHH-----HTC-HHHHHHHHHTSC--CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH
T ss_pred ccHHHHHhhccCCCcHHHH-HHH-----cCC-HHHHHHHHHhcC--CCCCccCCCCCCHHHHHHHccccchHHHHHHHHH
Confidence 7788999999 999 999 9999999998 7 9999999999999999999999 99999999
Q ss_pred HcCCCCccccccCCCcHHHHHHHhCChHHHHHHHh-hcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCC
Q 004089 234 KYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLK-ETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNI 312 (774)
Q Consensus 234 ~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d 312 (774)
++|++ ++.+|..|.||||+|+..|+.+++++|++ .|++++ ..+..|.||||+|+..|+.+++++|+++|+++. .+|
T Consensus 207 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~-~~d 283 (285)
T 1wdy_A 207 DHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKRGASTD-CGD 283 (285)
T ss_dssp HTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC-CSS
T ss_pred HcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc-ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC-ccc
Confidence 99999 89999999999999999999999999999 888888 599999999999999999999999999999987 554
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2e-37 Score=336.70 Aligned_cols=250 Identities=11% Similarity=-0.020 Sum_probs=217.6
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCC
Q 004089 134 YYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHG 213 (774)
Q Consensus 134 ~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g 213 (774)
+..|.||||+||..|+.++|+.||+ .+.+++.+|..|.||||+ |+. .|+ .++|++|+++| ++++ +..|
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~--~~~g 84 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQNRFGCTALHL-ACK-----FGC-VDTAKYLASVG--EVHS--LWHG 84 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHH-HHH-----HCC-HHHHHHHHHHC--CCCC--CBTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCcHHHH-HHH-----cCC-HHHHHHHHHCC--CCcc--ccCC
Confidence 3458999999999999999998775 588999999999999999 999 999 99999999999 6443 4579
Q ss_pred CcHHHHHHHcCCHHHHHHHHHc----CCCCccc-----------------cccCCCcHHHHHHHhC--ChHHHHHHHhhc
Q 004089 214 RTALHFCAAKGNLKAIKVLMKY----KPDLTNV-----------------RDNEGTLPVQLAALYG--HKDTFQYLLKET 270 (774)
Q Consensus 214 ~TpLh~A~~~g~~~iv~~Ll~~----~~~l~~~-----------------~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~ 270 (774)
.||||+|+..|+.+++++|++. +.+ ++. .|..|.||||+|+..| +.+++++|+++|
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g 163 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence 9999999999999999999999 777 566 8889999999999999 999999999999
Q ss_pred CCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCc----cCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhcc
Q 004089 271 HGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGR----DNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCI 346 (774)
Q Consensus 271 ~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~----~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~ 346 (774)
++++ ..+..|.||||+|+..|+.+++++|++.|++... ..|.
T Consensus 164 a~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~--------------------------------- 209 (364)
T 3ljn_A 164 ASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK--------------------------------- 209 (364)
T ss_dssp CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT---------------------------------
T ss_pred CCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC---------------------------------
Confidence 9999 5899999999999999999999999999987320 2222
Q ss_pred ccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhh
Q 004089 347 PARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLT 426 (774)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (774)
T Consensus 210 -------------------------------------------------------------------------------- 209 (364)
T 3ljn_A 210 -------------------------------------------------------------------------------- 209 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHH
Q 004089 427 HMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIH 506 (774)
Q Consensus 427 ~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll 506 (774)
.|.||||+||..|+.++|++|++++.+ ++.+|..|+||||+|+.+|+.+++++|+
T Consensus 210 ------------------------~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 264 (364)
T 3ljn_A 210 ------------------------QGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELL 264 (364)
T ss_dssp ------------------------TCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHH
T ss_pred ------------------------CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHH
Confidence 466777788888899999999999887 7899999999999999999999999999
Q ss_pred hcCcc---------cccccccccCCCchhhhhhccCCC
Q 004089 507 GVNFT---------TFLFSFRDFLGNNILHLAGRLVPS 535 (774)
Q Consensus 507 ~~~~~---------~~~~n~~D~~G~TpLHlAa~~g~~ 535 (774)
+.+.. .......|..|+|||+.|+..|+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~ 302 (364)
T 3ljn_A 265 QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302 (364)
T ss_dssp HHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred HcCCchhhhcCcccCcccccccccccccchhhhhccCH
Confidence 98711 112223788999999999999874
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.3e-37 Score=314.96 Aligned_cols=225 Identities=19% Similarity=0.179 Sum_probs=177.6
Q ss_pred CCchHHHHHHHcC-------------CHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccC
Q 004089 136 GRYWPLYKMTQKN-------------DWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVV 202 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g-------------~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~ 202 (774)
.|+||||+|+..| +.++++.|+..+....+..|..|.||||+ |+. .|+ .++|++|++.|
T Consensus 9 ~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g- 80 (253)
T 1yyh_A 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL-AAR-----YSR-SDAAKRLLEAS- 80 (253)
T ss_dssp -------------------------------------------CCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT-
T ss_pred CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHH-HHH-----cCC-HHHHHHHHHcC-
Confidence 3666666666655 89999988866444345568899999999 999 999 99999999999
Q ss_pred ccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCc
Q 004089 203 PEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGA 282 (774)
Q Consensus 203 ~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 282 (774)
++++.+|..|.||||+|+..|+.+++++|+++++..++.+|..|.||||+|+..|+.+++++|++.|++++ ..+..|.
T Consensus 81 -~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~ 158 (253)
T 1yyh_A 81 -ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGK 158 (253)
T ss_dssp -CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-CBCTTSC
T ss_pred -CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-CcCCCCC
Confidence 99999999999999999999999999999999984489999999999999999999999999999999999 5999999
Q ss_pred hHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCc
Q 004089 283 LVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDE 362 (774)
Q Consensus 283 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 362 (774)
||||+|+..|+.+++++|+++|++++ .+|..
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~------------------------------------------------ 189 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGANKD-MQNNR------------------------------------------------ 189 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT------------------------------------------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCC------------------------------------------------
Confidence 99999999999999999999998876 44444
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccc
Q 004089 363 TVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVI 442 (774)
Q Consensus 363 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 442 (774)
T Consensus 190 -------------------------------------------------------------------------------- 189 (253)
T 1yyh_A 190 -------------------------------------------------------------------------------- 189 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcC
Q 004089 443 WTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 443 ~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~ 509 (774)
|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+++|+.+|+++|.+..
T Consensus 190 ---------g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 190 ---------EETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp ---------SCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred ---------CCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 44566667777889999999999887 7889999999999999999999999998865
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.3e-36 Score=309.19 Aligned_cols=221 Identities=19% Similarity=0.150 Sum_probs=202.1
Q ss_pred CccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 004089 162 DALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTN 241 (774)
Q Consensus 162 ~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~ 241 (774)
.+++.+|..|.||||+ |+. .|+ .+++++|++.| ++++.++..|.||||+|+..|+.+++++|++.|++ ++
T Consensus 2 ~~~~~~~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~ 71 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHA-AAE-----AGH-VDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VD 71 (237)
T ss_dssp CCCCCSSCCSCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CC
T ss_pred CCcccccCCCCCHHHH-HHH-----cCc-HHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CC
Confidence 3577888999999999 999 999 99999999999 99999999999999999999999999999999999 89
Q ss_pred ccccCCCcHHHHHHHhCChHHHHHHHhhc-CCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHH
Q 004089 242 VRDNEGTLPVQLAALYGHKDTFQYLLKET-HGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLK 320 (774)
Q Consensus 242 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh 320 (774)
.+|..|.||||+|+..|+.+++++|++.+ .+++ ..+..|.||||+|+..|+.+++++|+++|+++. .+|..
T Consensus 72 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~------ 143 (237)
T 3b7b_A 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN-CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNE------ 143 (237)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT------
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCC------
Confidence 99999999999999999999999999998 6777 588999999999999999999999999998875 34433
Q ss_pred HHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhh
Q 004089 321 TLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLH 400 (774)
Q Consensus 321 ~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 400 (774)
T Consensus 144 -------------------------------------------------------------------------------- 143 (237)
T 3b7b_A 144 -------------------------------------------------------------------------------- 143 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCcccc
Q 004089 401 KLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAH 480 (774)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~ 480 (774)
|.||||.|+..|+.+++++|++.+.+ ++
T Consensus 144 ---------------------------------------------------g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~ 171 (237)
T 3b7b_A 144 ---------------------------------------------------ENICLHWAAFSGCVDIAEILLAAKCD-LH 171 (237)
T ss_dssp ---------------------------------------------------SCCHHHHHHHHCCHHHHHHHHTTTCC-TT
T ss_pred ---------------------------------------------------CCCHHHHHHHCCCHHHHHHHHHcCCC-CC
Confidence 45666677778889999999999877 78
Q ss_pred ccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCCC
Q 004089 481 LFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVPS 535 (774)
Q Consensus 481 ~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~~ 535 (774)
.+|..|+||||+|+++|+.+++++|++.+ .+++.+|.+|+||||+|+..|+.
T Consensus 172 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 172 AVNIHGDSPLHIAARENRYDCVVLFLSRD---SDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTT---CCTTCCCTTSCCHHHHSCTTCHH
T ss_pred CcCCCCCCHHHHHHHhCCHhHHHHHHHcC---CCCCccCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999998 88999999999999999999874
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.5e-36 Score=309.23 Aligned_cols=226 Identities=17% Similarity=0.185 Sum_probs=183.9
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHh---hCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccccc
Q 004089 134 YYGRYWPLYKMTQKNDWRGVEDFVG---EHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQN 210 (774)
Q Consensus 134 ~~~g~t~Lh~Aa~~g~~~~v~~lL~---~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~ 210 (774)
+..|+||||+|+..|+.++++.|++ ..+.+++.+|..|.||||+ |+. .|+ .+++++|++.| ++++.+|
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~ 76 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL-AVI-----TTL-PSVVRLLVTAG--ASPMALD 76 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCccccC
Confidence 4458899999999999988888876 4778888888888999999 888 888 99999999988 8888888
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCC----CCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccC-CCCchHH
Q 004089 211 RHGRTALHFCAAKGNLKAIKVLMKYKP----DLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSG-NDGALVL 285 (774)
Q Consensus 211 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~----~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L 285 (774)
..|.||||+|+..|+.+++++|++.++ + ++..|..|.||||+|+..|+.+++++|++.|++++. .+ ..|.|||
T Consensus 77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~g~t~L 154 (241)
T 1k1a_A 77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLD-LEARNYDGLTALHVAVNTECQETVQLLLERGADIDA-VDIKSGRSPL 154 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTTCCCHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccccCCCcHH
Confidence 889999999999999999999998887 5 678888888999999999999999999988888874 55 7788899
Q ss_pred HHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccc
Q 004089 286 ANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVD 365 (774)
Q Consensus 286 h~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~ 365 (774)
|+|+..|+.+++++|+++|++++ .+|.+
T Consensus 155 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~--------------------------------------------------- 182 (241)
T 1k1a_A 155 IHAVENNSLSMVQLLLQHGANVN-AQMYS--------------------------------------------------- 182 (241)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT-CBCTT---------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC-CcCCC---------------------------------------------------
Confidence 99988888888998888887765 34433
Q ss_pred cccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCC
Q 004089 366 RDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTN 445 (774)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 445 (774)
T Consensus 183 -------------------------------------------------------------------------------- 182 (241)
T 1k1a_A 183 -------------------------------------------------------------------------------- 182 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcC
Q 004089 446 PENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 446 ~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~ 509 (774)
|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.++++.|.+.+
T Consensus 183 ------g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 183 ------GSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp ------SCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred ------CCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 44555566677778888888888776 7788888899999998888888888887654
No 19
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.2e-36 Score=304.12 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=207.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
.+.+|||.|+..|+.+.++.++...+..++.+|..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t 75 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACS-----AGH-TEIVEFLLQLG--VPVNDKDDAGWS 75 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCSCCCCTTSCC
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHH-----cCc-HHHHHHHHHhC--CCCCCcCCCCCC
Confidence 477999999999999999999999888899999999999999 999 999 99999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHH
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYD 295 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 295 (774)
|||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+
T Consensus 76 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 76 PLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHH
Confidence 99999999999999999999999 89999999999999999999999999999999998 58999999999999999999
Q ss_pred HHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccc
Q 004089 296 VALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTS 375 (774)
Q Consensus 296 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (774)
++++|++.|++++ .+|.+|
T Consensus 154 ~v~~Ll~~g~~~~-~~~~~g------------------------------------------------------------ 172 (231)
T 3aji_A 154 MVHILLFYKASTN-IQDTEG------------------------------------------------------------ 172 (231)
T ss_dssp HHHHHHHTTCCSC-CCCTTS------------------------------------------------------------
T ss_pred HHHHHHhcCCCcc-ccCCCC------------------------------------------------------------
Confidence 9999999998876 444444
Q ss_pred cccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchH
Q 004089 376 KIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGA 455 (774)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tp 455 (774)
.||
T Consensus 173 -----------------------------------------------------------------------------~t~ 175 (231)
T 3aji_A 173 -----------------------------------------------------------------------------NTP 175 (231)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred -----------------------------------------------------------------------------CCH
Confidence 455
Q ss_pred HHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcC
Q 004089 456 MFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 456 Lh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~ 509 (774)
||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|.+.+
T Consensus 176 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 176 LHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 5666777789999999999877 7899999999999999999999999998865
No 20
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.3e-36 Score=312.75 Aligned_cols=240 Identities=18% Similarity=0.114 Sum_probs=135.0
Q ss_pred hccccccCCCchhhHHhHhCCChhhH----HHHHHhhHHHHhhcCCCCCCc-cchhHH-HHHHHHhCCHHHHHHHHHHHH
Q 004089 48 DAQKNEYYGPYCLLYAMIESNDWQGV----EDFVKQTKEAQSSKDAQGNEY-YDLSWT-LCRMIEINDRQGAEDLVKEVK 121 (774)
Q Consensus 48 ~~~~~d~~g~t~Lh~Aa~~~~~~~~~----~~~l~~~~~~L~~~g~d~~~~-~~~~~t-L~~A~~~~~~~~~~~Ll~~~~ 121 (774)
|++..|.+|.||||+|+..|+..+.. +.--.+.+++|++.|++++.. |..|.| ||+|+..|+.++++.|++.+.
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 57888999999999999987311000 000055666777777776543 566655 777777777777777774322
Q ss_pred hcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHcc
Q 004089 122 EAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIV 201 (774)
Q Consensus 122 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g 201 (774)
+.+. .+..|+||||+|+..|+.++++.|++..+.+++.++..|.||||+ |+. .|+ .+++++|++.|
T Consensus 82 ----~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g 147 (253)
T 1yyh_A 82 ----DANI---QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL-AAR-----LAV-EGMLEDLINSH 147 (253)
T ss_dssp ----CTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH-HHH-----HTC-SSHHHHHHHTT
T ss_pred ----CCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH-HHH-----cCh-HHHHHHHHHcC
Confidence 2221 223467777777777777777766665555777777777777777 777 777 77777777777
Q ss_pred CccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCC
Q 004089 202 VPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDG 281 (774)
Q Consensus 202 ~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g 281 (774)
++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus 148 --~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g 223 (253)
T 1yyh_A 148 --ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD-ITDHMD 223 (253)
T ss_dssp --CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTC
T ss_pred --CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-ccccCC
Confidence 77777777777777777777777777777777777 67777777777777777777777777777777777 377777
Q ss_pred chHHHHHHhhchHHHHHHHHhhCC
Q 004089 282 ALVLANLIHARLYDVALDLLKLHP 305 (774)
Q Consensus 282 ~t~Lh~A~~~~~~~iv~~Ll~~~~ 305 (774)
.||||+|+..|+.+++++|.+..+
T Consensus 224 ~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 224 RLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHHC---
T ss_pred CCHHHHHHHcCCHHHHHHHHHHhh
Confidence 777777777777777777776544
No 21
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.2e-36 Score=328.47 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=181.8
Q ss_pred CCCCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCcccc
Q 004089 88 DAQGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTD 166 (774)
Q Consensus 88 g~d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~ 166 (774)
+.+.+..|..|.| ||+|+..|+.++++.|++.+. +.+. .+..|+||||+|+..|+.++++.|++. +.+++
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~----~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~- 80 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV----SPTI---QNRFGCTALHLACKFGCVDTAKYLASV-GEVHS- 80 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTC----CTTC---CCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCC-
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----Cccc---cCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcc-
Confidence 4578888999999 999999999999999996432 3322 344599999999999999999988866 44443
Q ss_pred ccCCCCChHHHHHhccccccCCcHHHHHHHHHHc----cCcccccc-----------------ccCCCCcHHHHHHHcC-
Q 004089 167 KIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASI----VVPEALAR-----------------QNRHGRTALHFCAAKG- 224 (774)
Q Consensus 167 ~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~----g~~~~~~~-----------------~~~~g~TpLh~A~~~g- 224 (774)
+.+|.||||+ |+. .|+ .++|++|++. | ++++. +|..|.||||+|+..|
T Consensus 81 -~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 150 (364)
T 3ljn_A 81 -LWHGQKPIHL-AVM-----ANK-TDLVVALVEGAKERG--QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP 150 (364)
T ss_dssp -CBTTBCHHHH-HHH-----TTC-HHHHHHHHHHHHHHT--CCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCG
T ss_pred -ccCCCCHHHH-HHH-----cCC-HHHHHHHHHhccccC--CCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCC
Confidence 3578999999 999 999 9999999999 6 55555 8889999999999999
Q ss_pred -CHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCC-----CccccCCCCchHHHHHHhhchHHHHH
Q 004089 225 -NLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG-----VDIYSGNDGALVLANLIHARLYDVAL 298 (774)
Q Consensus 225 -~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~Lh~A~~~~~~~iv~ 298 (774)
+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++ ++ ..+..|.||||+|+..|+.++++
T Consensus 151 ~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~ 228 (364)
T 3ljn_A 151 EYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILINWEDVAM 228 (364)
T ss_dssp GGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHHHTTTCHHHHH
T ss_pred chHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHHHHHHcCCHHHHH
Confidence 99999999999999 899999999999999999999999999999988 77 58999999999999999999999
Q ss_pred HHHhhCCCCCccCCCCCCCHHHHHH
Q 004089 299 DLLKLHPTIGRDNIDSRRIVLKTLA 323 (774)
Q Consensus 299 ~Ll~~~~~~~~~~d~~g~tpLh~A~ 323 (774)
+|+++|++++ .+|.+|+||||+|+
T Consensus 229 ~Ll~~gad~~-~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 229 RFVEMGIDVN-MEDNEHTVPLYLSV 252 (364)
T ss_dssp HHHTTTCCTT-CCCTTSCCHHHHHH
T ss_pred HHHHcCCCCC-CCCCCCCCHHHHHH
Confidence 9999999987 56665555555443
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.7e-36 Score=314.07 Aligned_cols=254 Identities=13% Similarity=0.011 Sum_probs=182.7
Q ss_pred cccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccc---cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 004089 164 LTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEA---LARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLT 240 (774)
Q Consensus 164 ~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~---~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~ 240 (774)
++.+|.+|+||||+ |+. .|+ .++|++|++.| ++ ++.+|..|.||||+|+..|+.+++++|+++|++ +
T Consensus 2 ~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~ 71 (282)
T 1oy3_D 2 FGYVTEDGDTALHL-AVI-----HQH-EPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-V 71 (282)
T ss_dssp CCCCCTTCCCHHHH-HHH-----TTC-HHHHHHHHHHH--TTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-S
T ss_pred CCccCCCCCcHHHH-HHH-----cCC-HHHHHHHHhcC--CCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C
Confidence 46788999999999 999 999 99999999999 65 889999999999999999999999999999999 8
Q ss_pred cccccCCCcHHHHHHHhCChHHHHHHHhhcCCCcc------------ccCCCCchHHHHHHhhchHH-HHHHHHhhCCCC
Q 004089 241 NVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI------------YSGNDGALVLANLIHARLYD-VALDLLKLHPTI 307 (774)
Q Consensus 241 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~g~t~Lh~A~~~~~~~-iv~~Ll~~~~~~ 307 (774)
+.+|..|.||||+|+..|+.+++++|++++++... .....+.++++.++..+... ....+...+.++
T Consensus 72 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (282)
T 1oy3_D 72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151 (282)
T ss_dssp SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT
T ss_pred CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC
Confidence 99999999999999999999999999999876432 12345667777777665433 334444455555
Q ss_pred CccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCC
Q 004089 308 GRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGS 387 (774)
Q Consensus 308 ~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 387 (774)
. .+|..|+||||+|+..++ ...++.++..+
T Consensus 152 ~-~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~g------------------------------------------ 181 (282)
T 1oy3_D 152 E-AENYDGHTPLHVAVIHKD-------AEMVRLLRDAG------------------------------------------ 181 (282)
T ss_dssp T-CCCTTSCCHHHHHHHTTC-------HHHHHHHHHHT------------------------------------------
T ss_pred C-CcCCCCcCHHHHHHHcCC-------HHHHHHHHHcC------------------------------------------
Confidence 5 788999999999998873 22333333222
Q ss_pred CcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHH
Q 004089 388 TQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEF 467 (774)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~ei 467 (774)
. ..+......|.||||+|+..|+.++
T Consensus 182 ---------------------------------------------------~---~~~~~~~~~g~tpL~~A~~~~~~~~ 207 (282)
T 1oy3_D 182 ---------------------------------------------------A---DLNKPEPTCGRTPLHLAVEAQAASV 207 (282)
T ss_dssp ---------------------------------------------------C---CTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred ---------------------------------------------------C---CCCCCCCCCCcCHHHHHHHcCCHHH
Confidence 1 1121111248999999999999999
Q ss_pred HHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCCC
Q 004089 468 VNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVPS 535 (774)
Q Consensus 468 v~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~~ 535 (774)
|++|++.+.+ ++.+|..|+||||+|+++|+.+++++|++.| ++++.+|.+|.|||++|....+.
T Consensus 208 v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 208 LELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp HHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT---CCCCCCC----------------
T ss_pred HHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcC---CCcCcCCCcccccccccCCcccc
Confidence 9999999877 8899999999999999999999999999999 89999999999999999987653
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=9e-36 Score=303.56 Aligned_cols=219 Identities=14% Similarity=0.071 Sum_probs=197.1
Q ss_pred cccccCCCCChHHHHHhccccccCCcHHHHHHHHHH----ccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 004089 164 LTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLAS----IVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDL 239 (774)
Q Consensus 164 ~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~----~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l 239 (774)
++.+|.+|.||||+ |+. .|+ .+++++|++ .| .+++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 2 ~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~- 71 (241)
T 1k1a_A 2 ATRADEDGDTPLHI-AVV-----QGN-LPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS- 71 (241)
T ss_dssp -----CTTCCHHHH-HHH-----TTC-HHHHHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred ccccCCCCCcHHHH-HHH-----cCC-HHHHHHHHHHHHhcC--CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence 45678999999999 999 999 999999997 56 89999999999999999999999999999999999
Q ss_pred ccccccCCCcHHHHHHHhCChHHHHHHHhhcC----CCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCC-CC
Q 004089 240 TNVRDNEGTLPVQLAALYGHKDTFQYLLKETH----GVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNI-DS 314 (774)
Q Consensus 240 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d-~~ 314 (774)
++.+|..|.||||+|+..|+.+++++|++.++ +++ ..+..|.||||+|+..|+.+++++|++.|+++. ..+ .
T Consensus 72 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~- 148 (241)
T 1k1a_A 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADID-AVDIK- 148 (241)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT-
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccccc-
Confidence 89999999999999999999999999999987 555 588999999999999999999999999998876 222 2
Q ss_pred CCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccc
Q 004089 315 RRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTT 394 (774)
Q Consensus 315 g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 394 (774)
T Consensus 149 -------------------------------------------------------------------------------- 148 (241)
T 1k1a_A 149 -------------------------------------------------------------------------------- 148 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHh
Q 004089 395 YGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMA 474 (774)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~ 474 (774)
.|.||||.|+..|+.+++++|++.
T Consensus 149 --------------------------------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 149 --------------------------------------------------------SGRSPLIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp --------------------------------------------------------TCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred --------------------------------------------------------CCCcHHHHHHHcCCHHHHHHHHHc
Confidence 355677778888889999999999
Q ss_pred CCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCCC
Q 004089 475 YDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVPS 535 (774)
Q Consensus 475 ~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~~ 535 (774)
+.+ ++.+|..|+||||+|+.+|+.+++++|++.+ .+++.+|..|+||||+|+..|+.
T Consensus 173 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~ 229 (241)
T 1k1a_A 173 GAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSG---ADSSLKNCHNDTPLMVARSRRVI 229 (241)
T ss_dssp TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCTTTTCSSHHHH
T ss_pred CCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC---CCCCCcCCCCCCHHHHHHhcCcH
Confidence 877 8899999999999999999999999999988 88999999999999999999874
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=312.74 Aligned_cols=237 Identities=14% Similarity=0.132 Sum_probs=169.9
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHhhCCC-------ccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccc
Q 004089 134 YYGRYWPLYKMTQKNDWRGVEDFVGEHPD-------ALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEAL 206 (774)
Q Consensus 134 ~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~-------~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~ 206 (774)
+..+.+||+.||..|+.++|+.||+.... .++..+..|.||||. |+. .++..+++++|++.| +++
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~-a~~-----~~~~~~~v~~Ll~~G--adv 79 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQ-CPK-----CAPAQKRLAKVPASG--LGV 79 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CC--CCT
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHH-HHH-----hCCHHHHHHHHHHCC--CCC
Confidence 34578999999999999999988865432 256677888999999 998 777245899999999 999
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHH
Q 004089 207 ARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLA 286 (774)
Q Consensus 207 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh 286 (774)
|.+|.+|+||||+|+..|+.+++++|++.+++ ++.++..|.||+|+|+..++.+++++|++.|++++ ..+..|+||||
T Consensus 80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~ 157 (269)
T 4b93_B 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLI 157 (269)
T ss_dssp TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHH
T ss_pred CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHH
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999 59999999999
Q ss_pred HHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCccccc
Q 004089 287 NLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDR 366 (774)
Q Consensus 287 ~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 366 (774)
+|+..|+.+++++|+++|++++ .+|..
T Consensus 158 ~A~~~g~~~~v~~Ll~~gadvn-~~~~~---------------------------------------------------- 184 (269)
T 4b93_B 158 YACSGGHHELVALLLQHGASIN-ASNNK---------------------------------------------------- 184 (269)
T ss_dssp HHHHTTCGGGHHHHHHTTCCTT-CBCTT----------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHCCCCCC-ccccC----------------------------------------------------
Confidence 9999999999999999999876 44444
Q ss_pred ccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCc
Q 004089 367 DVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNP 446 (774)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 446 (774)
T Consensus 185 -------------------------------------------------------------------------------- 184 (269)
T 4b93_B 185 -------------------------------------------------------------------------------- 184 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCc
Q 004089 447 ENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNN 524 (774)
Q Consensus 447 ~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~T 524 (774)
|.||||+||..|+.++|++|++.+.+ ++.+|.+|+||||+|+++++ ++++|.... ...+..|..|.|
T Consensus 185 -----g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~--i~~lL~~l~---~~~~~~~~~~~t 251 (269)
T 4b93_B 185 -----GNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK--IMELLQVVP---SCVASLDDVAET 251 (269)
T ss_dssp -----SCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH--HHHHTTC-----------------
T ss_pred -----CCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc--HHHHHHHHH---HhchhhhhccCC
Confidence 45566677777889999999999877 88999999999999998875 556554333 334444554544
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.8e-35 Score=298.33 Aligned_cols=228 Identities=18% Similarity=0.093 Sum_probs=179.8
Q ss_pred hccccccCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccC
Q 004089 48 DAQKNEYYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSS 126 (774)
Q Consensus 48 ~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~ 126 (774)
+.+..|.+|.||||+|+..++ .+.+++|+++|++++..+..|.| ||+|+..|+.++++.|++.+. +
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~ 69 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGH---------VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA----L 69 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC----C
T ss_pred CcccccCCCCCHHHHHHHcCc---------HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC----C
Confidence 456778889999999999999 88889999999999988877766 888888888888887773221 2
Q ss_pred ccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccc
Q 004089 127 EDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEAL 206 (774)
Q Consensus 127 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~ 206 (774)
.+. .+..|.||||+|+..|+.++++.|++..+.+++..+..|.||||+ |+. .|+ .+++++|++.| +++
T Consensus 70 ~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~~~~Ll~~g--~~~ 137 (237)
T 3b7b_A 70 VDP---KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW-ATE-----YKH-VDLVKLLLSKG--SDI 137 (237)
T ss_dssp CCC---CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCT
T ss_pred CCC---CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHCC--CCC
Confidence 221 233477888888888888888877766667788888888888888 888 888 88888888888 778
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHH
Q 004089 207 ARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLA 286 (774)
Q Consensus 207 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh 286 (774)
+.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+.+|.||||
T Consensus 138 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~t~l~ 215 (237)
T 3b7b_A 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-LKNKEGETPLQ 215 (237)
T ss_dssp TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHH
T ss_pred CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC-ccCCCCCCHHH
Confidence 88888888888888888888888888888887 67888888888888888888888888888888877 47888888888
Q ss_pred HHHhhchHHHHHHHHh
Q 004089 287 NLIHARLYDVALDLLK 302 (774)
Q Consensus 287 ~A~~~~~~~iv~~Ll~ 302 (774)
+|+..++.+.+..|++
T Consensus 216 ~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 216 CASLNSQVWSALQMSK 231 (237)
T ss_dssp HSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887766655554
No 26
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=7.5e-36 Score=314.82 Aligned_cols=264 Identities=17% Similarity=0.141 Sum_probs=213.2
Q ss_pred HHHHcCCHHHHHHHHhhCCCc--------cccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCC
Q 004089 143 KMTQKNDWRGVEDFVGEHPDA--------LTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGR 214 (774)
Q Consensus 143 ~Aa~~g~~~~v~~lL~~~~~~--------~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~ 214 (774)
.++..|..+.++.++...... ....+..|.||||. ||. .|+ .++|++|++.| ++++.+|..|.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~ 74 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACS-----SGD-TEEVLRLLERG--ADINYANVDGL 74 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHH-HHH-----HTC-HHHHHHHHHHC--CCTTCBCTTCC
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHH-HHH-----cCC-HHHHHHHHHcC--CCCcccCCCCC
Confidence 467777778777777653221 11223456899999 999 999 99999999999 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchH
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLY 294 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~ 294 (774)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.
T Consensus 75 t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~ 152 (299)
T 1s70_B 75 TALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAME 152 (299)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHhcchH
Confidence 999999999999999999999999 89999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCccccccccccccc
Q 004089 295 DVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVT 374 (774)
Q Consensus 295 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (774)
++++.++..........+..+.++++..
T Consensus 153 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 180 (299)
T 1s70_B 153 ELLQNEVNRQGVDIEAARKEEERIMLRD---------------------------------------------------- 180 (299)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHhhcCCCchhhhhhhhhHHHHH----------------------------------------------------
Confidence 9999988753322111111111111111
Q ss_pred ccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcch
Q 004089 375 SKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLG 454 (774)
Q Consensus 375 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~t 454 (774)
...+.......+......|.|
T Consensus 181 -----------------------------------------------------------~~~~l~~~~~~~~~~~~~g~t 201 (299)
T 1s70_B 181 -----------------------------------------------------------ARQWLNSGHINDVRHAKSGGT 201 (299)
T ss_dssp -----------------------------------------------------------HHHHHHHTCCCCCCCTTTCCC
T ss_pred -----------------------------------------------------------HHHHHhccCcchhhhcCCCCC
Confidence 011111111111111126899
Q ss_pred HHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhcc
Q 004089 455 AMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRL 532 (774)
Q Consensus 455 pLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~ 532 (774)
|||+||..|+.+++++|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++.+ ++++.+|..|+||||+|++.
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 202 ALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENL---CDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCTTTSCCSG
T ss_pred HHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHH
Confidence 99999999999999999998877 8899999999999999999999999999998 89999999999999999764
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=6e-35 Score=294.85 Aligned_cols=159 Identities=20% Similarity=0.241 Sum_probs=103.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccc-ccCCCCc
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALAR-QNRHGRT 215 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~-~~~~g~T 215 (774)
|+||||.|+..|+.++++.|++.++...+.+|..|.||||+ |+. .|+ .+++++|++.|.+.+++. .|..|.|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~~~~~~~~~~~~~~g~t 74 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW-SVS-----FQA-HEITSFLLSKMENVNLDDYPDDSGWT 74 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTCTTCCGGGCCCTTSCC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHH-HHH-----cCC-HHHHHHHHhccccccccccCCCCCCC
Confidence 45666666666666666666666555555566666666666 666 666 666666666663344444 5566666
Q ss_pred HHHHHHHcCCHHHHHHHHHcC--CCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhch
Q 004089 216 ALHFCAAKGNLKAIKVLMKYK--PDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARL 293 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~--~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~ 293 (774)
|||+|+..|+.+++++|+++| ++ ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+
T Consensus 75 ~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~ 152 (228)
T 2dzn_A 75 PFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGS 152 (228)
T ss_dssp HHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCC
Confidence 666666666666666666666 55 56666666666666666666666666666666666 366666666666666666
Q ss_pred HHHHHHHHhhC
Q 004089 294 YDVALDLLKLH 304 (774)
Q Consensus 294 ~~iv~~Ll~~~ 304 (774)
.+++++|++.|
T Consensus 153 ~~~v~~Ll~~g 163 (228)
T 2dzn_A 153 LKLIELLCGLG 163 (228)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcC
Confidence 66666666666
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-34 Score=292.93 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=187.3
Q ss_pred CCChHHHHHhccccccCCcHHHHHHHHHHccCcccc-ccccCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCccc-cccC
Q 004089 171 HKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEAL-ARQNRHGRTALHFCAAKGNLKAIKVLMKYK--PDLTNV-RDNE 246 (774)
Q Consensus 171 g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~-~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~--~~l~~~-~d~~ 246 (774)
|+||||+ |+. .|+ .+++++|++.+ .++ +.+|..|.||||+|+..|+.+++++|++.+ ++ ++. .|..
T Consensus 2 g~t~L~~-A~~-----~g~-~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~ 71 (228)
T 2dzn_A 2 SNYPLHQ-ACM-----ENE-FFKVQELLHSK--PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDS 71 (228)
T ss_dssp -CCHHHH-HHH-----TTC-HHHHHHHHHHC--GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTT
T ss_pred CccHHHH-HHH-----hCC-HHHHHHHHhcC--ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCC
Confidence 6899999 999 999 99999999999 554 458999999999999999999999999999 66 344 8899
Q ss_pred CCcHHHHHHHhCChHHHHHHHhhc--CCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHh
Q 004089 247 GTLPVQLAALYGHKDTFQYLLKET--HGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAK 324 (774)
Q Consensus 247 g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 324 (774)
|.||||+|+..|+.+++++|+++| ++++ ..+..|.||||+|+..|+.+++++|+++|++++ .+|..|
T Consensus 72 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g--------- 140 (228)
T 2dzn_A 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFN--------- 140 (228)
T ss_dssp SCCHHHHHHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTS---------
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCC---------
Confidence 999999999999999999999998 6666 588999999999999999999999999998876 444444
Q ss_pred CCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHH
Q 004089 325 KPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHR 404 (774)
Q Consensus 325 ~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (774)
T Consensus 141 -------------------------------------------------------------------------------- 140 (228)
T 2dzn_A 141 -------------------------------------------------------------------------------- 140 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCcccccccc
Q 004089 405 MLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQ 484 (774)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~ 484 (774)
.||||+|+..|+.+++++|++.++..++.+|.
T Consensus 141 ------------------------------------------------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~ 172 (228)
T 2dzn_A 141 ------------------------------------------------QIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172 (228)
T ss_dssp ------------------------------------------------CCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred ------------------------------------------------CCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence 45666677778899999999998666899999
Q ss_pred CCchHHHHHHhcCchHHHHHHH-hcCcccccccccccCCCchhhhhhccC
Q 004089 485 DEHRIFDLAVLHRREKVFNLIH-GVNFTTFLFSFRDFLGNNILHLAGRLV 533 (774)
Q Consensus 485 ~G~T~LH~A~~~g~~~iv~~Ll-~~~~~~~~~n~~D~~G~TpLHlAa~~g 533 (774)
.|+||||+|+..|+.+++++|+ +.+ ++++.+|.+|+||||+|++.+
T Consensus 173 ~g~t~L~~A~~~~~~~~v~~Ll~~~g---a~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 173 QGWTPLFHALAEGHGDAAVLLVEKYG---AEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHHC---CCSCCBCTTSCBGGGGCSSTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcC---CCCCccCCCCCcHHHHHHHHH
Confidence 9999999999999999999999 777 899999999999999998764
No 29
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.6e-34 Score=300.07 Aligned_cols=221 Identities=14% Similarity=0.004 Sum_probs=184.4
Q ss_pred CCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccC
Q 004089 91 GNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKID 169 (774)
Q Consensus 91 ~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~ 169 (774)
++.+|..|+| ||+|++.|+.++++.|++.+.. .......+..|+||||+|+..|+.++++.|+ +.|++++.+|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~ 76 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG----HEYLDLQNDLGQTALHLAAILGEASTVEKLY-AAGAGVLVAER 76 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT----SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----cccccccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCC
Confidence 3567778877 9999999999999999976652 2212233456999999999999999999777 56899999999
Q ss_pred CCCChHHHHHhccccccCCcHHHHHHHHHHccCc---------------------------------------------c
Q 004089 170 GHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVP---------------------------------------------E 204 (774)
Q Consensus 170 ~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~---------------------------------------------~ 204 (774)
.|.||||+ |+. .|+ .+++++|++.|.. .
T Consensus 77 ~g~tpL~~-A~~-----~~~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (282)
T 1oy3_D 77 GGHTALHL-ACR-----VRA-HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149 (282)
T ss_dssp TSCCHHHH-HTT-----TTC-HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred CCCCHHHH-HHH-----cCC-cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhh
Confidence 99999999 999 999 9999999998721 2
Q ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccccc-CCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCch
Q 004089 205 ALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN-EGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGAL 283 (774)
Q Consensus 205 ~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 283 (774)
+++.+|..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..|+.+++++|+++|++++ .++..|+|
T Consensus 150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~t 227 (282)
T 1oy3_D 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRT 227 (282)
T ss_dssp GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-ccccCCCC
Confidence 3778899999999999999999999999999999 788875 49999999999999999999999999999 59999999
Q ss_pred HHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCC
Q 004089 284 VLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKP 326 (774)
Q Consensus 284 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 326 (774)
|||+|+..|+.+++++|+++|++++ .+|.+|.|||++|....
T Consensus 228 pL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 228 PLGSALLRPNPILARLLRAHGAPEP-EDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTCCCC-CCC--------------
T ss_pred HHHHHHHcCCcHHHHHHHHcCCCcC-cCCCcccccccccCCcc
Confidence 9999999999999999999999998 89999999999998765
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=301.47 Aligned_cols=221 Identities=16% Similarity=0.151 Sum_probs=172.9
Q ss_pred CccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccc-cccccCCCchHHHHHHHcCCHH-HHHHHHhhCCCccccccC
Q 004089 93 EYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDA-QRDEYYGRYWPLYKMTQKNDWR-GVEDFVGEHPDALTDKID 169 (774)
Q Consensus 93 ~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~~~~g~t~Lh~Aa~~g~~~-~v~~lL~~~~~~~~~~~~ 169 (774)
.+|..+.+ |+.|++.|+.++++.|++.+......... ....+..|.||||.|+..++.+ +++ +|...|+++|.+|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~-~Ll~~Gadvn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLA-KVPASGLGVNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHH-HHHHCCCCCCCcCC
Confidence 34556656 99999999999999999544322111111 1123345889999999988875 566 45577999999999
Q ss_pred CCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCc
Q 004089 170 GHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTL 249 (774)
Q Consensus 170 ~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~t 249 (774)
+|+||||+ |+. .|+ .++|++|++.| ++++.++..|.||+|+|+..++.+++++|++.|++ ++.+|..|.|
T Consensus 85 ~G~TpLh~-A~~-----~g~-~~~v~~Ll~~~--a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~T 154 (269)
T 4b93_B 85 DGSSPLHV-AAL-----HGR-ADLIPLLLKHG--ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNT 154 (269)
T ss_dssp TSCCHHHH-HHH-----TTC-TTHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCC
T ss_pred CCCCHHHH-HHH-----cCc-HHHHHHHHhcC--CCcCccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCC
Confidence 99999999 999 999 99999999999 99999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCC
Q 004089 250 PVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKP 326 (774)
Q Consensus 250 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 326 (774)
|||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++ .+|.+|+||||+|++++
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gadvn-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~-~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGASIN-ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ-VLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCSGGGSCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCC-ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHhCC
Confidence 9999999999999999999999999 599999999999999999999999999999998 89999999999998765
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.8e-34 Score=297.59 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=190.7
Q ss_pred HcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCC
Q 004089 146 QKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGN 225 (774)
Q Consensus 146 ~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~ 225 (774)
...+.+.+..+|..+ +++.+|..|.||||+ |+. .|+ .++|++|++.| ++++.+| |.||||+|+..|+
T Consensus 8 ~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~--g~t~L~~A~~~g~ 74 (285)
T 3kea_A 8 NTWKSKQLKSFLSSK--DTFKADVHGHSASYY-AIA-----DNN-VRLVCTLLNAG--ALKNLLE--NEFPLHQAATLED 74 (285)
T ss_dssp GGCCHHHHHHHHHST--TTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--GGGSCCT--TCCHHHHHTTSSS
T ss_pred HhcCHHHHHHHHHhC--CCCccCCCCCCHHHH-HHH-----cCC-HHHHHHHHhCC--CCCCCCC--CCCHHHHHHHcCC
Confidence 345555555577664 578899999999999 999 999 99999999999 8888774 8999999999999
Q ss_pred HHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCC-chHHHHHHhhchHHHHHHHHhhC
Q 004089 226 LKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDG-ALVLANLIHARLYDVALDLLKLH 304 (774)
Q Consensus 226 ~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~~~~~iv~~Ll~~~ 304 (774)
.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|+..|+.+++++|+++|
T Consensus 75 ~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 75 TKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp CHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 9999999999999 79999999999999999999999999999998888 588888 79999999999999999999988
Q ss_pred CCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCC
Q 004089 305 PTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTP 384 (774)
Q Consensus 305 ~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 384 (774)
++... .
T Consensus 153 ~~~~~---~----------------------------------------------------------------------- 158 (285)
T 3kea_A 153 PSTFD---L----------------------------------------------------------------------- 158 (285)
T ss_dssp CTTCC---C-----------------------------------------------------------------------
T ss_pred Ccccc---c-----------------------------------------------------------------------
Confidence 65421 0
Q ss_pred CCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCc
Q 004089 385 FGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGI 464 (774)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~ 464 (774)
..|.||||.|+..|+
T Consensus 159 -----------------------------------------------------------------~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 159 -----------------------------------------------------------------AILLSCIHITIKNGH 173 (285)
T ss_dssp -----------------------------------------------------------------STHHHHHHHHHHTTC
T ss_pred -----------------------------------------------------------------cCCccHHHHHHHcCh
Confidence 035678888888888
Q ss_pred HHHHHHHHHhCCccccccccCCchH-HHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCCC
Q 004089 465 PEFVNEFIMAYDNSAHLFAQDEHRI-FDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVPS 535 (774)
Q Consensus 465 ~eiv~~Ll~~~~~~~~~~d~~G~T~-LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~~ 535 (774)
.+++++|++++.+ ++.+|..|+|| ||+|+.+|+.+++++|++.| ++++.+| +.|+..|+.
T Consensus 174 ~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g---ad~~~~~-------~~a~~~~~~ 234 (285)
T 3kea_A 174 VDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD---INIYSAN-------LENVLLDDA 234 (285)
T ss_dssp HHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC---BCSTTTT-------GGGGTTTCH
T ss_pred HHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCC-------hhhhhcCCH
Confidence 9999999998776 78889999997 99999999999999999988 7788877 456666663
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=286.81 Aligned_cols=232 Identities=13% Similarity=0.046 Sum_probs=201.4
Q ss_pred cccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 004089 164 LTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVR 243 (774)
Q Consensus 164 ~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~ 243 (774)
++..|..|.||||. |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|++.+++.....
T Consensus 2 ~~~~d~~~~~~l~~-A~~-----~g~-~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 72 (240)
T 3eu9_A 2 MTHIDDYSTWDIVK-ATQ-----YGI-YERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72 (240)
T ss_dssp CCCCSCGGGCCHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB
T ss_pred ccccccccchHHHH-HHH-----cCC-hHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc
Confidence 45667888999999 999 999 99999999999 9999999999999999999999999999999999955566
Q ss_pred ccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 004089 244 DNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLA 323 (774)
Q Consensus 244 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 323 (774)
+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|+++. .+|.+|.||||+|+
T Consensus 73 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~ 150 (240)
T 3eu9_A 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAA 150 (240)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred CCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHH
Confidence 6679999999999999999999999999998 589999999999999999999999999999987 89999999999999
Q ss_pred hCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhH
Q 004089 324 KKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLH 403 (774)
Q Consensus 324 ~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (774)
..+.. ...++.++...
T Consensus 151 ~~~~~------~~~~~~L~~~~---------------------------------------------------------- 166 (240)
T 3eu9_A 151 YRTHS------VDPTRLLLTFN---------------------------------------------------------- 166 (240)
T ss_dssp HHCCS------STTHHHHHHTT----------------------------------------------------------
T ss_pred HhCCh------HHHHHHHHhcC----------------------------------------------------------
Confidence 76532 11122222111
Q ss_pred HHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccc
Q 004089 404 RMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFA 483 (774)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d 483 (774)
. ..+......|.||||.|+..|+.+++++|++.+.+ ++.+|
T Consensus 167 -----------------------------------~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~ 207 (240)
T 3eu9_A 167 -----------------------------------V---SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQN 207 (240)
T ss_dssp -----------------------------------C---CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBC
T ss_pred -----------------------------------C---CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcC
Confidence 1 11111112688999999999999999999999877 78999
Q ss_pred cCCchHHHHHHhcCchHHHHHHHhcC
Q 004089 484 QDEHRIFDLAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 484 ~~G~T~LH~A~~~g~~~iv~~Ll~~~ 509 (774)
..|+||||+|++.|+.+++++|++.+
T Consensus 208 ~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 208 IKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp TTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999999999999999999987
No 33
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.1e-33 Score=286.30 Aligned_cols=225 Identities=16% Similarity=0.087 Sum_probs=170.7
Q ss_pred cCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCC-CCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccc
Q 004089 54 YYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDA-QGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQR 131 (774)
Q Consensus 54 ~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~-d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 131 (774)
..+.||||.|+..|+ .+.++.+++.+. ..+.++..|.| ||+|+..|+.++++.|++.+. +.+.
T Consensus 4 ~~~~~~l~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~-- 68 (231)
T 3aji_A 4 CVSNIMICNLAYSGK---------LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV----PVND-- 68 (231)
T ss_dssp CCSSSHHHHHHHHTC---------HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CSCC--
T ss_pred ccccchHHHHHHhCC---------HHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC----CCCC--
Confidence 456788888888888 555665555543 35666666766 888888888888887774422 2221
Q ss_pred cccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccC
Q 004089 132 DEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNR 211 (774)
Q Consensus 132 ~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~ 211 (774)
.+..|+||||+|+..|+.++++.|+ +.+.+++.+|..|.||||+ |+. .|+ .+++++|++.| ++++.+|.
T Consensus 69 -~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~-A~~-----~~~-~~~~~~Ll~~g--~~~~~~~~ 137 (231)
T 3aji_A 69 -KDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHY-AAS-----KNR-HEIAVMLLEGG--ANPDAKDH 137 (231)
T ss_dssp -CCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCT
T ss_pred -cCCCCCCHHHHHHHcCHHHHHHHHH-HcCCCCCCCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCCcCC
Confidence 2334778888888888888888665 4567788888888888888 888 888 88888888888 77788888
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhh
Q 004089 212 HGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHA 291 (774)
Q Consensus 212 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 291 (774)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..
T Consensus 138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~ 215 (231)
T 3aji_A 138 YDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKTPLQVAKGG 215 (231)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHSCHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhh
Confidence 888888888888888888888888887 67888888888888888888888888888888877 4788888888888888
Q ss_pred chHHHHHHHHhhCCC
Q 004089 292 RLYDVALDLLKLHPT 306 (774)
Q Consensus 292 ~~~~iv~~Ll~~~~~ 306 (774)
++.+++++|++++++
T Consensus 216 ~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 216 LGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcccccc
Confidence 888888888877654
No 34
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-35 Score=312.89 Aligned_cols=297 Identities=12% Similarity=0.021 Sum_probs=203.2
Q ss_pred cCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCcccccc
Q 004089 54 YYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRD 132 (774)
Q Consensus 54 ~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 132 (774)
..+.+|+|. .. .+.+++|+++|++++.++..|.+ ++ |+.++++.|++.+...
T Consensus 21 ~~~~~~~~~----~~---------~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~--------- 73 (327)
T 1sw6_A 21 DRTAGPIIT----FT---------HDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP--------- 73 (327)
T ss_dssp ----CCEEE----CC---------TTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------
T ss_pred cccccchhh----hc---------CchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCC---------
Confidence 345677774 44 55688999999999999999988 54 8999999999877631
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccc-ccC
Q 004089 133 EYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALAR-QNR 211 (774)
Q Consensus 133 ~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~-~~~ 211 (774)
+.++++.|+...... .. ..+.....+.+|+ |+. .+. .+++++|++.| ++++. +|.
T Consensus 74 ----~~~~~~~a~~~~~~~----------~~-~~~~~~~~~~~~~-a~~-----~~~-~~~~~~l~~~g--~dvn~~~d~ 129 (327)
T 1sw6_A 74 ----EIQEMPTSLNNDSSN----------RN-SEGGSSNQQQQHV-SFD-----SLL-QEVNDAFPNTQ--LNLNIPVDE 129 (327)
T ss_dssp ----------------------------------------------CHH-----HHH-HHHHHHCTTSC--CCSCSCCST
T ss_pred ----ccccchHhhhccccc----------cc-ccccCCccchhHH-HHH-----hhH-HHHHHHHHhcC--CCcccccCC
Confidence 225677766532100 00 0011112345688 888 788 88899999988 88888 788
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCC---hHHHHHHHhhc-CCCccccCCCCchHHHH
Q 004089 212 HGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGH---KDTFQYLLKET-HGVDIYSGNDGALVLAN 287 (774)
Q Consensus 212 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~ 287 (774)
.|+||||+||..|+.++|++|+++|++ ++.+|..|.||||+|+..|+ .++++.|++.+ ++++ ..+..|+||||+
T Consensus 130 ~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~-~~d~~g~tpLh~ 207 (327)
T 1sw6_A 130 HGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI-LEDSMNRTILHH 207 (327)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG-EECTTCCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc-CCCCCCCCHHHH
Confidence 999999999999999999999999988 78899999999999999888 77888888776 5566 588899999999
Q ss_pred HHh----hchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcc
Q 004089 288 LIH----ARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDET 363 (774)
Q Consensus 288 A~~----~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 363 (774)
|+. .|+.+++++|++.+..+.. . ..+....+.+...+
T Consensus 208 A~~~~~~~g~~~~v~~Ll~~~~~~~~-~-~~~~~i~~~~~~~g------------------------------------- 248 (327)
T 1sw6_A 208 IIITSGMTGCSAAAKYYLDILMGWIV-K-KQNRPIQSGTNEKE------------------------------------- 248 (327)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHH-H-GGGCCEEEC------------------------------------------
T ss_pred HHHHccccccHHHHHHHHHHHHHHHh-c-ccchHHHhhhhccc-------------------------------------
Confidence 998 7889999999887543220 0 00000000000000
Q ss_pred cccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhcccc
Q 004089 364 VDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIW 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 443 (774)
..+..
T Consensus 249 ---------------------------------------------------------------------------~~~~~ 253 (327)
T 1sw6_A 249 ---------------------------------------------------------------------------SKPND 253 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 00000
Q ss_pred CCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCC
Q 004089 444 TNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGN 523 (774)
Q Consensus 444 ~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~ 523 (774)
.+ ..|.||||.|+. +++|++.. ++.+|..|+||||+|+++|+.++|++|++.| ++++.+|.+|+
T Consensus 254 ~~----~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G---ad~~~~d~~G~ 317 (327)
T 1sw6_A 254 KN----GERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYG---ADPFIANKSGL 317 (327)
T ss_dssp ----------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT---CCTTCCCTTSC
T ss_pred cc----ccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCC
Confidence 00 168899999986 88999883 7789999999999999999999999999998 89999999999
Q ss_pred chhhhhhccC
Q 004089 524 NILHLAGRLV 533 (774)
Q Consensus 524 TpLHlAa~~g 533 (774)
||||+|++.|
T Consensus 318 TpL~~A~~~g 327 (327)
T 1sw6_A 318 RPVDFGAGLE 327 (327)
T ss_dssp CGGGGTCC--
T ss_pred CHHHHHHhcC
Confidence 9999999875
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.6e-33 Score=283.39 Aligned_cols=212 Identities=20% Similarity=0.204 Sum_probs=184.8
Q ss_pred CCHHHHHHHHhhCCCccccc-cCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCH
Q 004089 148 NDWRGVEDFVGEHPDALTDK-IDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNL 226 (774)
Q Consensus 148 g~~~~v~~lL~~~~~~~~~~-~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~ 226 (774)
|+.++++.|++. +.+++.. |..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.
T Consensus 2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~ 71 (223)
T 2f8y_A 2 DAPAVISDFIYQ-GASLHNQTDRTGETALHL-AAR-----YSR-SDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQ 71 (223)
T ss_dssp ---CCEETTEET-TCCTTCCCTTTCCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CcHHHHHHHHHc-CCCcccccCCCCCchHHH-HHH-----cCC-HHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCH
Confidence 677888877654 5566554 7889999999 999 999 99999999999 89999999999999999999999
Q ss_pred HHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCC
Q 004089 227 KAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPT 306 (774)
Q Consensus 227 ~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 306 (774)
+++++|+++++..++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++
T Consensus 72 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 150 (223)
T 2f8y_A 72 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150 (223)
T ss_dssp HHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999885488999999999999999999999999999999988 5899999999999999999999999999887
Q ss_pred CCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCC
Q 004089 307 IGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFG 386 (774)
Q Consensus 307 ~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 386 (774)
++ .+|..
T Consensus 151 ~~-~~~~~------------------------------------------------------------------------ 157 (223)
T 2f8y_A 151 KD-MQNNR------------------------------------------------------------------------ 157 (223)
T ss_dssp TT-CCCTT------------------------------------------------------------------------
T ss_pred CC-CcCCC------------------------------------------------------------------------
Confidence 76 44444
Q ss_pred CCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHH
Q 004089 387 STQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPE 466 (774)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~e 466 (774)
|.||||+|+..|+.+
T Consensus 158 -----------------------------------------------------------------g~t~L~~A~~~~~~~ 172 (223)
T 2f8y_A 158 -----------------------------------------------------------------EETPLFLAAREGSYE 172 (223)
T ss_dssp -----------------------------------------------------------------CCCHHHHHHHHTCHH
T ss_pred -----------------------------------------------------------------CcCHHHHHHHcCCHH
Confidence 445666777778899
Q ss_pred HHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcC
Q 004089 467 FVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 467 iv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~ 509 (774)
++++|++++.+ ++.+|..|+||||+|+++++.+++++|++.+
T Consensus 173 ~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g 214 (223)
T 2f8y_A 173 TAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214 (223)
T ss_dssp HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence 99999999877 7888999999999999999999999999988
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.7e-34 Score=297.19 Aligned_cols=169 Identities=17% Similarity=0.079 Sum_probs=152.5
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCC
Q 004089 133 EYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRH 212 (774)
Q Consensus 133 ~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~ 212 (774)
.+..|+||||+|+..|+.++++.|++ .|.+++.+ +|+||||+ |+. .|+ .+++++|+++| ++++.+|..
T Consensus 27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~--~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--a~~~~~d~~ 94 (285)
T 3kea_A 27 ADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLL--ENEFPLHQ-AAT-----LED-TKIVKILLFSG--LDDSQFDDK 94 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCC--TTCCHHHH-HTT-----SSS-CHHHHHHHHTT--CCTTCCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC--CCCCHHHH-HHH-----cCC-HHHHHHHHHCC--CCCCCcCCC
Confidence 44569999999999999999997775 58888888 48999999 999 999 99999999999 999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCC-CcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhh
Q 004089 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEG-TLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHA 291 (774)
Q Consensus 213 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 291 (774)
|.||||+|+..|+.+++++|+++|++ ++.+|..| .||||+|+..|+.+++++|+++|++.. ....|.||||+|+..
T Consensus 95 g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~ 171 (285)
T 3kea_A 95 GNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKN 171 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHHHHHHHc
Confidence 99999999999999999999999999 89999999 899999999999999999999987663 234899999999999
Q ss_pred chHHHHHHHHhhCCCCCccCCCCCCC
Q 004089 292 RLYDVALDLLKLHPTIGRDNIDSRRI 317 (774)
Q Consensus 292 ~~~~iv~~Ll~~~~~~~~~~d~~g~t 317 (774)
|+.+++++|+++|++++ .+|..|+|
T Consensus 172 g~~~~v~~Ll~~gad~n-~~~~~g~t 196 (285)
T 3kea_A 172 GHVDMMILLLDYMTSTN-TNNSLLFI 196 (285)
T ss_dssp TCHHHHHHHHHHHHHTC-TTCCCBCC
T ss_pred ChHHHHHHHHHcCCCCC-cccCCCCC
Confidence 99999999999998876 44444444
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=284.60 Aligned_cols=231 Identities=14% Similarity=0.064 Sum_probs=207.6
Q ss_pred cccccCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCcc
Q 004089 50 QKNEYYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSED 128 (774)
Q Consensus 50 ~~~d~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 128 (774)
+..|.+|.||||+|+..++ .+.+++|++.|++++.++..|.| ||+|+..|+.++++.|++.+. +..
T Consensus 3 ~~~d~~~~~~l~~A~~~g~---------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~ 69 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGI---------YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA----IVD 69 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTT
T ss_pred cccccccchHHHHHHHcCC---------hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC----cch
Confidence 4567889999999999999 99999999999999999999987 999999999999999995443 222
Q ss_pred ccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccc
Q 004089 129 AQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALAR 208 (774)
Q Consensus 129 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~ 208 (774)
...+..|.||||+|+..|+.++++.|+ +.+.+++.++..|.||||+ |+. .|+ .+++++|+++| ++++.
T Consensus 70 --~~~~~~~~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~-A~~-----~~~-~~~~~~Ll~~~--~~~~~ 137 (240)
T 3eu9_A 70 --QLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHL-AAQ-----FGH-TSIVAYLIAKG--QDVDM 137 (240)
T ss_dssp --CCBTTTTBCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTC
T ss_pred --hhcCCcCCChhHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHH-HHH-----cCH-HHHHHHHHhcC--CCccc
Confidence 222334889999999999999999777 5688999999999999999 999 999 99999999999 99999
Q ss_pred ccCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCcccccc-CCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHH
Q 004089 209 QNRHGRTALHFCAAKGN-LKAIKVLMKYKPDLTNVRDN-EGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLA 286 (774)
Q Consensus 209 ~~~~g~TpLh~A~~~g~-~~iv~~Ll~~~~~l~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh 286 (774)
+|..|.||||+|+..++ .+++++|++.+++ ++..+. .|.||||+|+..|+.+++++|+++|++++ ..+..|.||||
T Consensus 138 ~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~ 215 (240)
T 3eu9_A 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALD 215 (240)
T ss_dssp CCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CBCTTSCBHHH
T ss_pred cCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHH
Confidence 99999999999997666 8999999999999 788886 89999999999999999999999999999 59999999999
Q ss_pred HHHhhchHHHHHHHHhhCCCC
Q 004089 287 NLIHARLYDVALDLLKLHPTI 307 (774)
Q Consensus 287 ~A~~~~~~~iv~~Ll~~~~~~ 307 (774)
+|+..|+.+++++|++.+++.
T Consensus 216 ~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC---
T ss_pred HHHHcCcHHHHHHHHHhhhcc
Confidence 999999999999999998764
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-33 Score=296.05 Aligned_cols=279 Identities=14% Similarity=0.102 Sum_probs=204.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhccc--CccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHh
Q 004089 103 RMIEINDRQGAEDLVKEVKEAKS--SEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAM 180 (774)
Q Consensus 103 ~A~~~~~~~~~~~Ll~~~~~~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~ 180 (774)
.++..+..+.+..++........ ........+..|.||||.||..|+.++++.||+. +.+++.+|..|.||||+ |+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~-A~ 81 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQ-AC 81 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHH-HH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHH-HH
Confidence 35556666666666643322111 1111222334578999999999999999988855 78999999999999999 99
Q ss_pred ccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCCh
Q 004089 181 LLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHK 260 (774)
Q Consensus 181 ~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~ 260 (774)
. .|+ .++|++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.
T Consensus 82 ~-----~g~-~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~ 152 (299)
T 1s70_B 82 I-----DDN-VDMVKFLVENG--ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAME 152 (299)
T ss_dssp H-----TTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHH
T ss_pred H-----cCC-HHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchH
Confidence 9 999 99999999999 99999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHhh-cCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhH
Q 004089 261 DTFQYLLKE-THGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQ 339 (774)
Q Consensus 261 ~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~ 339 (774)
++++.++.. +.+++ ..+..+.++++ ..+..++..+.......+..|.||||+|+..++ ...++
T Consensus 153 ~~~~~ll~~~~~~~~-~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~ 216 (299)
T 1s70_B 153 ELLQNEVNRQGVDIE-AARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGY-------TEVLK 216 (299)
T ss_dssp HHHHHHHHHHTCCHH-HHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC-------HHHHH
T ss_pred HHHHHHHhhcCCCch-hhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCc-------HHHHH
Confidence 999988865 33332 12222222222 334455555555554566777777777776653 12222
Q ss_pred HHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHH
Q 004089 340 RLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKV 419 (774)
Q Consensus 340 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (774)
.++..+.
T Consensus 217 ~Ll~~g~------------------------------------------------------------------------- 223 (299)
T 1s70_B 217 LLIQARY------------------------------------------------------------------------- 223 (299)
T ss_dssp HHHTTTC-------------------------------------------------------------------------
T ss_pred HHHHcCC-------------------------------------------------------------------------
Confidence 2222111
Q ss_pred HHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCch
Q 004089 420 IHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRRE 499 (774)
Q Consensus 420 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~ 499 (774)
..+..+ ..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|++....
T Consensus 224 -----------------------d~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~ 278 (299)
T 1s70_B 224 -----------------------DVNIKD-YDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADEDILG 278 (299)
T ss_dssp -----------------------CTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCSGGGH
T ss_pred -----------------------CCCCcC-CCCCcHHHHHHhcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHHHHH
Confidence 111100 1678899999999999999999999877 789999999999999875544
Q ss_pred HHHHHHHh
Q 004089 500 KVFNLIHG 507 (774)
Q Consensus 500 ~iv~~Ll~ 507 (774)
.++.+++
T Consensus 279 -~l~~l~~ 285 (299)
T 1s70_B 279 -YLEELQK 285 (299)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4444443
No 39
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.3e-32 Score=276.70 Aligned_cols=213 Identities=17% Similarity=0.124 Sum_probs=194.3
Q ss_pred HhhHHHHhhcCCCCCCc-cchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHH
Q 004089 78 KQTKEAQSSKDAQGNEY-YDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVED 155 (774)
Q Consensus 78 ~~~~~~L~~~g~d~~~~-~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ 155 (774)
.+.+++|++.|++++.. |..|.| ||+|+..|+.++++.|++.+. +.+. .+..|+||||+|+..|+.++++.
T Consensus 4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~---~~~~g~t~L~~A~~~~~~~~v~~ 76 (223)
T 2f8y_A 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA----DANI---QDNMGRTPLHAAVSADAQGVFQI 76 (223)
T ss_dssp -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTC---CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC----CCCC---cCCCCCCHHHHHHHcCCHHHHHH
Confidence 56778899999999876 777877 999999999999999995432 3222 34459999999999999999999
Q ss_pred HHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 004089 156 FVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKY 235 (774)
Q Consensus 156 lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 235 (774)
|++..+.+++.++..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 77 Ll~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 147 (223)
T 2f8y_A 77 LIRNRATDLDARMHDGTTPLIL-AAR-----LAV-EGMLEDLINSH--ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147 (223)
T ss_dssp HHHBTTSCTTCCCTTCCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCCCcccCCCCCCcHHHH-HHH-----hCc-HHHHHHHHHcC--CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 9988777999999999999999 999 999 99999999999 99999999999999999999999999999999
Q ss_pred CCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCC
Q 004089 236 KPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIG 308 (774)
Q Consensus 236 ~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 308 (774)
|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|+...
T Consensus 148 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 148 GAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD-ITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred CCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-cccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 999 89999999999999999999999999999999999 599999999999999999999999999998653
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.2e-33 Score=283.99 Aligned_cols=222 Identities=15% Similarity=0.155 Sum_probs=186.0
Q ss_pred ccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCc--cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 004089 165 TDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVP--EALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNV 242 (774)
Q Consensus 165 ~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~--~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~ 242 (774)
+.+|.+|.||||+ |+. .|+ .+++++|++.+.. ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 2 ~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~ 73 (236)
T 1ikn_D 2 QQLTEDGDSFLHL-AII-----HEE-KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PEL 73 (236)
T ss_dssp -----CCCCTTHH-HHH-----TTC-SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCC
T ss_pred CcCCCCCCchhHH-HHH-----cCC-hhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCC
Confidence 3567889999999 999 999 9999999998721 37899999999999999999999999999999999 899
Q ss_pred cccCCCcHHHHHHHhCChHHHHHHHhhcCCCcc-----ccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCC-CCC
Q 004089 243 RDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI-----YSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNID-SRR 316 (774)
Q Consensus 243 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~-~g~ 316 (774)
+|..|.||||+|+..|+.+++++|++.+++... ..+..|.||||+|+..|+.+++++|+++|++++ .++. .
T Consensus 74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~-- 150 (236)
T 1ikn_D 74 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCN-- 150 (236)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTT--
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCC--
Confidence 999999999999999999999999999876321 578889999999999999999999999998886 3333 3
Q ss_pred CHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccc
Q 004089 317 IVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYG 396 (774)
Q Consensus 317 tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 396 (774)
T Consensus 151 -------------------------------------------------------------------------------- 150 (236)
T 1ikn_D 151 -------------------------------------------------------------------------------- 150 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCC
Q 004089 397 AMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYD 476 (774)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~ 476 (774)
|.||||+|+..|+.++|++|++.+.
T Consensus 151 -------------------------------------------------------g~tpL~~A~~~~~~~~v~~Ll~~ga 175 (236)
T 1ikn_D 151 -------------------------------------------------------GRTALHLAVDLQNPDLVSLLLKCGA 175 (236)
T ss_dssp -------------------------------------------------------CCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred -------------------------------------------------------CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 4556667777788999999999987
Q ss_pred ccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCC
Q 004089 477 NSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVP 534 (774)
Q Consensus 477 ~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~ 534 (774)
+ ++.+|..|+||||+|+.+|+.+++++|++.+ ........+.+|.||.+.+.....
T Consensus 176 ~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~~ 231 (236)
T 1ikn_D 176 D-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESEFTE 231 (236)
T ss_dssp C-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS-CGGGSSCCCCCTTTCCCCC-----
T ss_pred C-CCcccCCCCCHHHHHHccCchHHHHHHHHcc-hhhhhcCCccchHHHHhhhccccc
Confidence 7 8899999999999999999999999999998 122345889999999998887654
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=8.8e-32 Score=272.52 Aligned_cols=162 Identities=20% Similarity=0.203 Sum_probs=148.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccc-----cccc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEAL-----ARQN 210 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~-----~~~~ 210 (774)
.|+||||.|+..|+.++++.|++..+.+++.+|..|+||||+ |+. .|+ .+++++|++.| +++ +.+|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~~--~~~~~~~~~~~~ 72 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHI-AAL-----YDN-LEAAMVLMEAA--PELVFEPMTSEL 72 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHHC--GGGGGCCCCSTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--chhccccccccC
Confidence 378999999999999999999988799999999999999999 999 999 99999999999 665 6678
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccccc-------------CCCcHHHHHHHhCChHHHHHHHhhcCCCcccc
Q 004089 211 RHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN-------------EGTLPVQLAALYGHKDTFQYLLKETHGVDIYS 277 (774)
Q Consensus 211 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~-------------~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 277 (774)
..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..|+.+++++|+++|++++ ..
T Consensus 73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~ 150 (232)
T 2rfa_A 73 YEGQTALHIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-AQ 150 (232)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-CC
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CC
Confidence 8999999999999999999999999998 677665 79999999999999999999999999998 58
Q ss_pred CCCCchHHHHHHhhchHHHH----HHHHhhCCCCC
Q 004089 278 GNDGALVLANLIHARLYDVA----LDLLKLHPTIG 308 (774)
Q Consensus 278 ~~~g~t~Lh~A~~~~~~~iv----~~Ll~~~~~~~ 308 (774)
|.+|+||||+|+..|+.+++ ++|++.|++..
T Consensus 151 d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred CCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 99999999999999999888 89999988653
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=1.7e-31 Score=270.45 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=132.4
Q ss_pred CCCChHHHHHhccccccCCcHHHHHHHHHHc-cCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc----cccc
Q 004089 170 GHKTIFHLIAMLLVDVESDEGTCLVDNLASI-VVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLT----NVRD 244 (774)
Q Consensus 170 ~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~-g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~----~~~d 244 (774)
.|+||||+ |+. .|+ .+++++|++. | ++++.+|..|+||||+|+..|+.+++++|++.+++.. +..|
T Consensus 2 ~g~t~L~~-A~~-----~g~-~~~v~~Ll~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 72 (232)
T 2rfa_A 2 IWESPLLL-AAK-----END-VQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL 72 (232)
T ss_dssp CTTCHHHH-HHH-----TTC-HHHHHHHHTTTC--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT
T ss_pred CCCCHHHH-HHH-----cCC-HHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC
Confidence 47999999 999 999 9999999998 7 9999999999999999999999999999999998832 6677
Q ss_pred cCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCC-------------CCchHHHHHHhhchHHHHHHHHhhCCCCCccC
Q 004089 245 NEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGN-------------DGALVLANLIHARLYDVALDLLKLHPTIGRDN 311 (774)
Q Consensus 245 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~ 311 (774)
..|.||||+|+..|+.+++++|+++|++++. .+. .|.||||+|+..|+.+++++|+++|++++ .+
T Consensus 73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~ 150 (232)
T 2rfa_A 73 YEGQTALHIAVINQNVNLVRALLARGASVSA-RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-AQ 150 (232)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-CC
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHhCCCCCCc-ccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CC
Confidence 8999999999999999999999999999884 443 79999999999999999999999999987 77
Q ss_pred CCCCCCHHHHHHhCC
Q 004089 312 IDSRRIVLKTLAKKP 326 (774)
Q Consensus 312 d~~g~tpLh~A~~~~ 326 (774)
|.+|+||||+|+..+
T Consensus 151 d~~g~t~L~~A~~~~ 165 (232)
T 2rfa_A 151 DSLGNTVLHILILQP 165 (232)
T ss_dssp CTTSCCHHHHHHTCS
T ss_pred CCCCCCHHHHHHHcC
Confidence 887877777776554
No 43
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.5e-31 Score=253.27 Aligned_cols=158 Identities=24% Similarity=0.293 Sum_probs=147.8
Q ss_pred hHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHH
Q 004089 139 WPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALH 218 (774)
Q Consensus 139 t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh 218 (774)
++|+.||+.|+.++|+.|| +.|+++|.+|..|+||||+ |+. .|+ .+++++|++.| ++++.+|..|+||||
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll-~~Gadvn~~d~~g~t~l~~-a~~-----~~~-~~~~~~ll~~g--ad~~~~d~~g~TpLh 75 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHH-AAE-----NGH-KEVVKLLISKG--ADVNAKDSDGRTPLH 75 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTSCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHH-HHH-----cCC-HHHHHHHHhcc--cchhhhccCCCCHHH
Confidence 5799999999999999777 4689999999999999999 999 999 99999999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHH
Q 004089 219 FCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVAL 298 (774)
Q Consensus 219 ~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~ 298 (774)
+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|+++|++++ ..+.+|+||||+|+..|+.++++
T Consensus 76 ~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g~~~iv~ 153 (169)
T 4gpm_A 76 HAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVK 153 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999999 89999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHhhCCCCC
Q 004089 299 DLLKLHPTIG 308 (774)
Q Consensus 299 ~Ll~~~~~~~ 308 (774)
+|+++|+++.
T Consensus 154 ~Ll~~GA~ie 163 (169)
T 4gpm_A 154 LLEKQGGWLE 163 (169)
T ss_dssp HHHTC-----
T ss_pred HHHHCCCCcC
Confidence 9999999875
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=9.2e-32 Score=273.24 Aligned_cols=220 Identities=17% Similarity=0.059 Sum_probs=181.0
Q ss_pred ccccCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccchhHHHHHHHHhCCHHHHHHHHHHHHhcccCcccc
Q 004089 51 KNEYYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYDLSWTLCRMIEINDRQGAEDLVKEVKEAKSSEDAQ 130 (774)
Q Consensus 51 ~~d~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~~~tL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 130 (774)
..|.+|.||||+|+..++ .+.++.|++.+.+. +...+
T Consensus 3 ~~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~--------------------------------~~~~~-- 39 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEE---------KALTMEVIRQVKGD--------------------------------LAFLN-- 39 (236)
T ss_dssp ----CCCCTTHHHHHTTC---------SSSSSCCCC-------------------------------------CCCCC--
T ss_pred cCCCCCCchhHHHHHcCC---------hhHHHHHHHHhhcc--------------------------------HHHhh--
Confidence 457778888888888888 77676666554321 00111
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCc----ccc
Q 004089 131 RDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVP----EAL 206 (774)
Q Consensus 131 ~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~----~~~ 206 (774)
..+..|+||||+|+..|+.++++.|+ +.|++++.+|..|.||||+ |+. .|+ .+++++|++.|.+ ..+
T Consensus 40 -~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~~~~~~~~~~~ 110 (236)
T 1ikn_D 40 -FQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHL-ACE-----QGC-LASVGVLTQSCTTPHLHSIL 110 (236)
T ss_dssp -CCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHHH-HHH-----HTC-HHHHHHHHHSTTTTSSSCGG
T ss_pred -ccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHH-HHH-----cCC-HHHHHHHHhcccchhHHHHh
Confidence 12335889999999999999999666 5789999999999999999 999 999 9999999999821 226
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccccc-CCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHH
Q 004089 207 ARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN-EGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVL 285 (774)
Q Consensus 207 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L 285 (774)
+..|..|.||||+|+..|+.+++++|+++|++ ++.++. .|.||||+|+..|+.+++++|+++|++++ ..+..|.|||
T Consensus 111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl 188 (236)
T 1ikn_D 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPY 188 (236)
T ss_dssp GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCCCGG
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccCCCCCHH
Confidence 77888999999999999999999999999999 788887 99999999999999999999999999999 5999999999
Q ss_pred HHHHhhchHHHHHHHHhhCCCCC-ccCCCCCCCHHHHHHh
Q 004089 286 ANLIHARLYDVALDLLKLHPTIG-RDNIDSRRIVLKTLAK 324 (774)
Q Consensus 286 h~A~~~~~~~iv~~Ll~~~~~~~-~~~d~~g~tpLh~A~~ 324 (774)
|+|+..|+.+++++|+++|++.. ...+.+|.||.+.+..
T Consensus 189 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp GGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred HHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 99999999999999999999654 4677888888775443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1e-30 Score=258.24 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=156.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
.+.||||.|+..|+.+.++.||...+.+++.+|..|.||||+ |+. .|+ .+++++|+++| ++++.+|..|.|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t 74 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVH-----NND-IEIAKALIDRG--ADINLQNSISDS 74 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTSCC
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCCCCCCCCC
Confidence 477999999999999999999988888899999999999999 999 999 99999999999 899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhc-CCCccccCCCCchHHHHHHhhch-
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKET-HGVDIYSGNDGALVLANLIHARL- 293 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~A~~~~~- 293 (774)
|||+|+..|+.+++++|++.+...++..|..|.||||+|+..|+.+++++|+++| ++++ ..+..|.||||+|+..++
T Consensus 75 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~ 153 (201)
T 3hra_A 75 PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREG 153 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCC
T ss_pred HHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccc
Confidence 9999999999999999995544338889999999999999999999999999998 7787 588899999999998877
Q ss_pred ----HHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCC
Q 004089 294 ----YDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKP 326 (774)
Q Consensus 294 ----~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 326 (774)
.+++++|+++|++++ .+|.+|+||||+|+..+
T Consensus 154 ~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~ 189 (201)
T 3hra_A 154 NQLYQDIVKLLMENGADQS-IKDNSGRTAMDYANQKG 189 (201)
T ss_dssp SHHHHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred hhhHHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcC
Confidence 899999999998887 67777766666665544
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.6e-31 Score=277.85 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=176.7
Q ss_pred cCCCCCCccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCcccc-ccccCCCchHHHHHHHc---CCHHHHHHHHhhCC
Q 004089 87 KDAQGNEYYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQ-RDEYYGRYWPLYKMTQK---NDWRGVEDFVGEHP 161 (774)
Q Consensus 87 ~g~d~~~~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~~~g~t~Lh~Aa~~---g~~~~v~~lL~~~~ 161 (774)
.++..+..|..|.| ||+|++.|+.+.++.|++.+...+...... ...+..|+||||+|+.. |+.++++.|++. +
T Consensus 2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-g 80 (273)
T 2pnn_A 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-A 80 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-H
T ss_pred CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-h
Confidence 45677788888988 999999999999999999887665444321 12345699999999987 999999988865 3
Q ss_pred Cc-------cc----cccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccC--------------CCCcH
Q 004089 162 DA-------LT----DKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNR--------------HGRTA 216 (774)
Q Consensus 162 ~~-------~~----~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~--------------~g~Tp 216 (774)
++ ++ .+|..|.||||+ |+. .|+ .++|++|+++| ++++.++. .|.||
T Consensus 81 a~~~~~~~~i~~~~~~~d~~g~tpL~~-A~~-----~g~-~~~v~~Ll~~g--a~~~~~~~~~~~~~~~~~~~~~~g~tp 151 (273)
T 2pnn_A 81 RKTDSLKQFVNASYTDSYYKGQTALHI-AIE-----RRN-MTLVTLLVENG--ADVQAAANGDFFKKTKGRPGFYFGELP 151 (273)
T ss_dssp HHTTCHHHHHTCCCCSTTTTTCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCBCSGGGSSCSSSCCCCSCBSH
T ss_pred ccccchhHHhhcccccccCCCCCHHHH-HHH-----cCC-HHHHHHHHHCC--CCcCccccccccccccccccccCCCCH
Confidence 22 22 256789999999 999 999 99999999999 99999887 79999
Q ss_pred HHHHHHcCCHHHHHHHHH---cCCCCccccccCCCcHHHHHHHhCC---------hHHHHHHHhhcCCCcc------ccC
Q 004089 217 LHFCAAKGNLKAIKVLMK---YKPDLTNVRDNEGTLPVQLAALYGH---------KDTFQYLLKETHGVDI------YSG 278 (774)
Q Consensus 217 Lh~A~~~g~~~iv~~Ll~---~~~~l~~~~d~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~~~~~------~~~ 278 (774)
||+|+..|+.+++++|++ .|++ ++.+|..|.||||+|+..|+ .+++++|+++|++++. ..+
T Consensus 152 L~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d 230 (273)
T 2pnn_A 152 LSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITN 230 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred HHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccC
Confidence 999999999999999999 8999 89999999999999999998 7999999999988862 379
Q ss_pred CCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHH
Q 004089 279 NDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLK 320 (774)
Q Consensus 279 ~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh 320 (774)
..|+||||+|+..|+.+++++|+++|+.........+.+|-|
T Consensus 231 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 231 RKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred CCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 999999999999999999999999999544466666666543
No 47
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.4e-30 Score=257.31 Aligned_cols=197 Identities=15% Similarity=0.114 Sum_probs=176.6
Q ss_pred CCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCC
Q 004089 169 DGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGT 248 (774)
Q Consensus 169 ~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~ 248 (774)
..+.||||. |+. .|+ .+.++.|++.+ +.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus 3 ~~~~~~L~~-A~~-----~g~-~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 73 (201)
T 3hra_A 3 TYEVGALLE-AAN-----QRD-TKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISD 73 (201)
T ss_dssp CCCTTHHHH-HHH-----TTC-HHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred cccccHHHH-HHH-----hcc-HHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCC
Confidence 567899999 999 999 99999999998 359999999999999999999999999999999999 899999999
Q ss_pred cHHHHHHHhCChHHHHHHHh-hcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhC-CCCCccCCCCCCCHHHHHHhCC
Q 004089 249 LPVQLAALYGHKDTFQYLLK-ETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLH-PTIGRDNIDSRRIVLKTLAKKP 326 (774)
Q Consensus 249 tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~-~~~~~~~d~~g~tpLh~A~~~~ 326 (774)
||||+|+..|+.+++++|++ .+++++ ..+..|.||||+|+..|+.+++++|++++ .+++ .+|..|+||||+|+..+
T Consensus 74 t~l~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~ 151 (201)
T 3hra_A 74 SPYLYAGAQGRTEILAYMLKHATPDLN-KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLR 151 (201)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCCCTT-CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSS
T ss_pred CHHHHHHHcCCHHHHHHHHhccCcccc-cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhc
Confidence 99999999999999999995 455777 58999999999999999999999999999 5555 78888888888887665
Q ss_pred CCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHH
Q 004089 327 YAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRML 406 (774)
Q Consensus 327 ~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (774)
+.
T Consensus 152 ~~------------------------------------------------------------------------------ 153 (201)
T 3hra_A 152 EG------------------------------------------------------------------------------ 153 (201)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCC
Q 004089 407 WNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDE 486 (774)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G 486 (774)
..++.+++++|++.+.+ ++.+|..|
T Consensus 154 ------------------------------------------------------~~~~~~~v~~Ll~~ga~-~~~~~~~g 178 (201)
T 3hra_A 154 ------------------------------------------------------NQLYQDIVKLLMENGAD-QSIKDNSG 178 (201)
T ss_dssp ------------------------------------------------------SHHHHHHHHHHHHTTCC-TTCCCTTS
T ss_pred ------------------------------------------------------hhhHHHHHHHHHHCCCC-CCccCCCC
Confidence 01247899999999877 78899999
Q ss_pred chHHHHHHhcCchHHHHHHHhcC
Q 004089 487 HRIFDLAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 487 ~T~LH~A~~~g~~~iv~~Ll~~~ 509 (774)
+||||+|+++|+.+++++|++.|
T Consensus 179 ~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 179 RTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999865
No 48
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=6.3e-32 Score=288.50 Aligned_cols=242 Identities=12% Similarity=-0.035 Sum_probs=182.7
Q ss_pred hhhccccccCCCchhhHHhHhCCChhhHHHHHHhhHHHHhhcCCCCCCccc--------------hhHH----HHHHHHh
Q 004089 46 SKDAQKNEYYGPYCLLYAMIESNDWQGVEDFVKQTKEAQSSKDAQGNEYYD--------------LSWT----LCRMIEI 107 (774)
Q Consensus 46 ~~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~--------------~~~t----L~~A~~~ 107 (774)
..+++..|..|.|+++ ++ .+.++.|+++|++.+.... .+.+ +|.|+..
T Consensus 42 ga~i~~~~~~g~~~~~-----g~---------~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~ 107 (327)
T 1sw6_A 42 PLKIMKALPSPVVNDN-----EQ---------KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107 (327)
T ss_dssp SCCCEECBCCCCCCCH-----HH---------HHHHHHHHHHHHC-------------------------------CHHH
T ss_pred CcccccCCCCCCcccC-----ch---------hHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHh
Confidence 5678888999999987 77 8888999999988665210 1111 3555443
Q ss_pred CCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccC
Q 004089 108 NDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVES 187 (774)
Q Consensus 108 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~ 187 (774)
+.. .+++.+...+++.+. ..+..|+||||+||..|+.++|+.|| +.|++++.+|..|+||||+ |+. .
T Consensus 108 ~~~----~~~~~l~~~g~dvn~--~~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~Gad~n~~d~~g~TpLh~-A~~-----~ 174 (327)
T 1sw6_A 108 LLQ----EVNDAFPNTQLNLNI--PVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVK-AVK-----S 174 (327)
T ss_dssp HHH----HHHHHCTTSCCCSCS--CCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHH-HHH-----S
T ss_pred hHH----HHHHHHHhcCCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHH-HHH-----h
Confidence 333 344444444333332 13456999999999999999999777 5589999999999999999 999 8
Q ss_pred CcH--HHHHHHHHHccCccccccccCCCCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCCcc
Q 004089 188 DEG--TCLVDNLASIVVPEALARQNRHGRTALHFCAA----KGNLKAIKVLMKY--------------------KPDLTN 241 (774)
Q Consensus 188 g~~--~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~----~g~~~iv~~Ll~~--------------------~~~l~~ 241 (774)
|+. .++++.|++.+ .++++.+|..|+||||+|++ .|+.+++++|++. |++ ++
T Consensus 175 g~~~~~~~~~~ll~~~-~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~ 252 (327)
T 1sw6_A 175 VNNYDSGTFEALLDYL-YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PN 252 (327)
T ss_dssp SHHHHTTCHHHHHHHH-GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred cccccHHHHHHHHHhh-hccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cc
Confidence 761 37888999887 36799999999999999999 9999999999987 777 89
Q ss_pred ccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHH
Q 004089 242 VRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKT 321 (774)
Q Consensus 242 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~ 321 (774)
.+|..|.||||.|+. +++|+++ +++ .++.+|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||+
T Consensus 253 ~~~~~g~t~L~~a~~------~~~Ll~~--~~n-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~-~~d~~G~TpL~~ 322 (327)
T 1sw6_A 253 DKNGERKDSILENLD------LKWIIAN--MLN-AQDSNGDTCLNIAARLGNISIVDALLDYGADPF-IANKSGLRPVDF 322 (327)
T ss_dssp -------CHHHHHCS------HHHHHHH--TTT-CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT-CCCTTSCCGGGG
T ss_pred cccccCCChhHHHHH------HHHHHHh--CCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHH
Confidence 999999999999985 8999999 677 589999999999999999999999999999998 899999999999
Q ss_pred HHhCC
Q 004089 322 LAKKP 326 (774)
Q Consensus 322 A~~~~ 326 (774)
|++.|
T Consensus 323 A~~~g 327 (327)
T 1sw6_A 323 GAGLE 327 (327)
T ss_dssp TCC--
T ss_pred HHhcC
Confidence 98754
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.3e-31 Score=272.89 Aligned_cols=165 Identities=19% Similarity=0.281 Sum_probs=134.1
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHh---hCCCccc----cccCCCCChHHHHHhccccccC---CcHHHHHHHHHHccC
Q 004089 133 EYYGRYWPLYKMTQKNDWRGVEDFVG---EHPDALT----DKIDGHKTIFHLIAMLLVDVES---DEGTCLVDNLASIVV 202 (774)
Q Consensus 133 ~~~~g~t~Lh~Aa~~g~~~~v~~lL~---~~~~~~~----~~~~~g~TpLh~~A~~~~~~~~---g~~~~~v~~Ll~~g~ 202 (774)
.+..|+||||.|+..|+.++|+.|++ ..+.+++ ..|..|+||||+ |+. . |+ .++|++|++.|
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~-A~~-----~~~~g~-~~~v~~Ll~~g- 80 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK-AML-----NLHNGQ-NDTIALLLDVA- 80 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHH-HHH-----SCBTTB-CHHHHHHHHHH-
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHH-HHH-----HHhcCC-hHHHHHHHHhh-
Confidence 34559999999999999999998887 3566665 457889999999 997 6 99 99999999998
Q ss_pred ccc-------ccc----ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccccc--------------CCCcHHHHHHHh
Q 004089 203 PEA-------LAR----QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN--------------EGTLPVQLAALY 257 (774)
Q Consensus 203 ~~~-------~~~----~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~--------------~g~tpL~~A~~~ 257 (774)
++ ++. +|..|.||||+|+..|+.+++++|+++|++ ++.++. .|.||||+|+..
T Consensus 81 -a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 158 (273)
T 2pnn_A 81 -RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158 (273)
T ss_dssp -HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred -ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHc
Confidence 54 233 567899999999999999999999999998 788886 688888888888
Q ss_pred CChHHHHHHHh---hcCCCccccCCCCchHHHHHHhhch---------HHHHHHHHhhCCCCC
Q 004089 258 GHKDTFQYLLK---ETHGVDIYSGNDGALVLANLIHARL---------YDVALDLLKLHPTIG 308 (774)
Q Consensus 258 g~~~~v~~Ll~---~~~~~~~~~~~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~ 308 (774)
|+.+++++|++ .|++++ ..+.+|+||||+|+..|+ .+++++|+++|++++
T Consensus 159 g~~~~v~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 159 NQLAIVKFLLQNSWQPADIS-ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp TCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcccCCCCce-eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 88888888888 777777 477788888888887776 677777777776554
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5.5e-31 Score=271.02 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=143.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHh---hCCCcccc----ccCCCCChHHHHHhccccccC---CcHHHHHHHHHHccCcccc
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVG---EHPDALTD----KIDGHKTIFHLIAMLLVDVES---DEGTCLVDNLASIVVPEAL 206 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~---~~~~~~~~----~~~~g~TpLh~~A~~~~~~~~---g~~~~~v~~Ll~~g~~~~~ 206 (774)
|+||||.|+..|+.+.++.|++ ..+.+++. +|..|+||||+ |+. . |+ .++|++|++.| +++
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~-----~~~~g~-~~~v~~Ll~~g--~~~ 72 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVL-----NLQDGV-NACIMPLLQID--KDS 72 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHH-----TCBTTB-CTTHHHHHHHH--HHT
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHH-----ccccch-HHHHHHHHhcC--Ccc
Confidence 7899999999999985543333 56889998 89999999999 999 9 99 99999999999 766
Q ss_pred cc-----------ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccC-------------CCcHHHHHHHhCChHH
Q 004089 207 AR-----------QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNE-------------GTLPVQLAALYGHKDT 262 (774)
Q Consensus 207 ~~-----------~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~-------------g~tpL~~A~~~g~~~~ 262 (774)
+. +|..|.||||+|+..|+.+++++|+++|++ ++.+|.. |.||||+|+..|+.++
T Consensus 73 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 151 (256)
T 2etb_A 73 GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151 (256)
T ss_dssp TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 53 346799999999999999999999999999 7888876 9999999999999999
Q ss_pred HHHHHh---hcCCCccccCCCCchHHHHHHh--hchHH-------HHHHHHhhCCCC
Q 004089 263 FQYLLK---ETHGVDIYSGNDGALVLANLIH--ARLYD-------VALDLLKLHPTI 307 (774)
Q Consensus 263 v~~Ll~---~~~~~~~~~~~~g~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~~ 307 (774)
+++|++ +|++++ ..+.+|+||||+|+. .++.+ ++++|+++|+++
T Consensus 152 v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 152 VTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp HHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 999999 899998 599999999999998 77888 999999998877
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2e-30 Score=266.82 Aligned_cols=198 Identities=11% Similarity=0.053 Sum_probs=173.9
Q ss_pred hHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccc-cccCCCchHHHHHHHc---CCHHHHHHHHhhCCCcccc------
Q 004089 98 SWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQR-DEYYGRYWPLYKMTQK---NDWRGVEDFVGEHPDALTD------ 166 (774)
Q Consensus 98 ~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~~~g~t~Lh~Aa~~---g~~~~v~~lL~~~~~~~~~------ 166 (774)
|.| ||+|+..|+.+.++.+++.+...+.+.+... ..+..|+||||+|+.. |+.++++.|++. +.+++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcc
Confidence 556 9999999999999888888876655544311 1345699999999999 999999988864 444442
Q ss_pred -----ccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCC-------------CCcHHHHHHHcCCHHH
Q 004089 167 -----KIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRH-------------GRTALHFCAAKGNLKA 228 (774)
Q Consensus 167 -----~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~-------------g~TpLh~A~~~g~~~i 228 (774)
+|..|.||||+ |+. .|+ .+++++|+++| ++++.+|.. |.||||+|+..|+.++
T Consensus 81 ~~~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 151 (256)
T 2etb_A 81 AQCTDEFYQGHSALHI-AIE-----KRS-LQCVKLLVENG--ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151 (256)
T ss_dssp CCCCSTTTTTCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred cccccccccCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCcccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 34679999999 999 999 99999999999 999998886 9999999999999999
Q ss_pred HHHHHH---cCCCCccccccCCCcHHHHHHH--hCChH-------HHHHHHhhcCCC-------ccccCCCCchHHHHHH
Q 004089 229 IKVLMK---YKPDLTNVRDNEGTLPVQLAAL--YGHKD-------TFQYLLKETHGV-------DIYSGNDGALVLANLI 289 (774)
Q Consensus 229 v~~Ll~---~~~~l~~~~d~~g~tpL~~A~~--~g~~~-------~v~~Ll~~~~~~-------~~~~~~~g~t~Lh~A~ 289 (774)
+++|++ +|++ ++.+|..|.||||+|+. .++.+ ++++|+++|+++ + ..+..|+||||+|+
T Consensus 152 v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~-~~d~~g~tpL~~A~ 229 (256)
T 2etb_A 152 VTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE-ISNHQGLTPLKLAA 229 (256)
T ss_dssp HHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG-CCCTTSCCHHHHHH
T ss_pred HHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc-ccCCCCCCHHHHHH
Confidence 999999 8999 89999999999999999 78888 999999999998 7 58999999999999
Q ss_pred hhchHHHHHHHHhhCCCC
Q 004089 290 HARLYDVALDLLKLHPTI 307 (774)
Q Consensus 290 ~~~~~~iv~~Ll~~~~~~ 307 (774)
..|+.+++++|+++|++.
T Consensus 230 ~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 230 KEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhCCCCC
Confidence 999999999999998654
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=5.7e-30 Score=264.00 Aligned_cols=201 Identities=14% Similarity=0.117 Sum_probs=175.9
Q ss_pred hhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccc-cccCCCchHHHHHH---HcCCHHHHHHHHhhCC----------
Q 004089 97 LSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQR-DEYYGRYWPLYKMT---QKNDWRGVEDFVGEHP---------- 161 (774)
Q Consensus 97 ~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~~~g~t~Lh~Aa---~~g~~~~v~~lL~~~~---------- 161 (774)
.+.+ ||.|++.|+.+.++.|++.+...+.+.+... ..+..|+||||+|+ ..|+.++++.|++...
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 4555 9999999999999999988877665555443 22355999999999 7799999998887521
Q ss_pred CccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccccc--------------CCCCcHHHHHHHcCCHH
Q 004089 162 DALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQN--------------RHGRTALHFCAAKGNLK 227 (774)
Q Consensus 162 ~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~--------------~~g~TpLh~A~~~g~~~ 227 (774)
...+..|..|.||||+ |+. .|+ .++|++|+++| ++++.++ ..|.||||+|+..|+.+
T Consensus 84 ~~~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 154 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHI-AIE-----RRC-KHYVELLVEKG--ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154 (260)
T ss_dssp CCBCCSSEESBCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred ccccccccCCCCHHHH-HHH-----cCC-HHHHHHHHhCC--CCcCccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence 3345556689999999 999 999 99999999999 9999988 58999999999999999
Q ss_pred HHHHHHH---cCCCCccccccCCCcHHHHHHHhCC---------hHHHHHHHhhcCCC-------ccccCCCCchHHHHH
Q 004089 228 AIKVLMK---YKPDLTNVRDNEGTLPVQLAALYGH---------KDTFQYLLKETHGV-------DIYSGNDGALVLANL 288 (774)
Q Consensus 228 iv~~Ll~---~~~~l~~~~d~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~~~-------~~~~~~~g~t~Lh~A 288 (774)
++++|++ +|++ ++.+|..|.||||+|+..|+ .+++++|+++|+++ + ..+..|.||||+|
T Consensus 155 ~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~-~~d~~g~tpL~~A 232 (260)
T 3jxi_A 155 IVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA-LLNNDGLSPLMMA 232 (260)
T ss_dssp HHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGG-CCCTTSCCHHHHH
T ss_pred HHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhh-cccCCCCCHHHHH
Confidence 9999999 8999 89999999999999999888 79999999999988 5 4899999999999
Q ss_pred HhhchHHHHHHHHhhCCCCC
Q 004089 289 IHARLYDVALDLLKLHPTIG 308 (774)
Q Consensus 289 ~~~~~~~iv~~Ll~~~~~~~ 308 (774)
+..|+.+++++|+++|++..
T Consensus 233 ~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhCCCcc
Confidence 99999999999999987653
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=4.6e-29 Score=238.53 Aligned_cols=162 Identities=22% Similarity=0.279 Sum_probs=143.6
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChH
Q 004089 96 DLSWTLCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIF 175 (774)
Q Consensus 96 ~~~~tL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpL 175 (774)
+.|.+|+.||+.|+.++++.|++.+. +.+. .+..|+||||+|+..|+.++++.|+ +.+++++.+|.+|+|||
T Consensus 3 dlg~~L~~Aa~~G~~~~v~~Ll~~Ga----dvn~---~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~g~TpL 74 (169)
T 4gpm_A 3 ELGKRLIEAAENGNKDRVKDLIENGA----DVNA---SDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPL 74 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTC----CTTC---CCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCC----CCCC---cCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccCCCCHH
Confidence 34667999999999999999995443 4333 3446999999999999999999776 56899999999999999
Q ss_pred HHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHH
Q 004089 176 HLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAA 255 (774)
Q Consensus 176 h~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~ 255 (774)
|+ |+. .|+ .++|++|+++| ++++.+|..|+||||+|++.|+.+++++|+++|++ ++.+|.+|.||||+|+
T Consensus 75 h~-A~~-----~g~-~~~v~~Ll~~g--advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~ 144 (169)
T 4gpm_A 75 HH-AAE-----NGH-KEVVKLLISKG--ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAR 144 (169)
T ss_dssp HH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred HH-HHH-----cCC-HHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHH
Confidence 99 999 999 99999999999 99999999999999999999999999999999999 8999999999999999
Q ss_pred HhCChHHHHHHHhhcCCCcc
Q 004089 256 LYGHKDTFQYLLKETHGVDI 275 (774)
Q Consensus 256 ~~g~~~~v~~Ll~~~~~~~~ 275 (774)
+.|+.+++++|+++|++++.
T Consensus 145 ~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 145 EHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HTTCHHHHHHHHTC------
T ss_pred HcCCHHHHHHHHHCCCCcCC
Confidence 99999999999999998873
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=8e-30 Score=262.92 Aligned_cols=164 Identities=20% Similarity=0.218 Sum_probs=142.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHh---hCCCcccccc----CCCCChHHHHHh---ccccccCCcHHHHHHHHHHccCc--
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVG---EHPDALTDKI----DGHKTIFHLIAM---LLVDVESDEGTCLVDNLASIVVP-- 203 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~---~~~~~~~~~~----~~g~TpLh~~A~---~~~~~~~g~~~~~v~~Ll~~g~~-- 203 (774)
.|+|+||.|++.|+.+.++.|++ ..+.+++..+ ..|.||||+ |+ + .|+ .+++++|++.|..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~-----~g~-~~~v~~Ll~~g~~~~ 76 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPK-ALLNLS-----AGR-NDTIPILLDIAEKTG 76 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHH-HHTSCB-----TTB-CTHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHH-HHHHhh-----cCC-HHHHHHHHHhccccc
Confidence 47899999999999997776665 4678888776 669999999 99 6 899 9999999999821
Q ss_pred -------cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc--------------cCCCcHHHHHHHhCChHH
Q 004089 204 -------EALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRD--------------NEGTLPVQLAALYGHKDT 262 (774)
Q Consensus 204 -------~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d--------------~~g~tpL~~A~~~g~~~~ 262 (774)
.+++..|..|+||||+|+..|+.+++++|+++|++ ++.+| ..|.||||+|+..|+.++
T Consensus 77 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 155 (260)
T 3jxi_A 77 NMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155 (260)
T ss_dssp CHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred chHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHH
Confidence 22445566899999999999999999999999999 78888 689999999999999999
Q ss_pred HHHHHh---hcCCCccccCCCCchHHHHHHhhch---------HHHHHHHHhhCCCCC
Q 004089 263 FQYLLK---ETHGVDIYSGNDGALVLANLIHARL---------YDVALDLLKLHPTIG 308 (774)
Q Consensus 263 v~~Ll~---~~~~~~~~~~~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~ 308 (774)
+++|++ .|++++ ..+..|+||||+|+..++ .+++++|+++|++++
T Consensus 156 v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~ 212 (260)
T 3jxi_A 156 VHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212 (260)
T ss_dssp HHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence 999999 888888 599999999999998777 689999999988764
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.3e-29 Score=242.17 Aligned_cols=170 Identities=12% Similarity=0.056 Sum_probs=155.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcH
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTA 216 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~Tp 216 (774)
+.||||.|+..|+.++++.|+...+..++.+|..|.||||+ |+. .|+ .+++++|+++| ++++.+|..|.||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t~ 72 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASA-----FGE-IETVRFLLEWG--ADPHILAKERESA 72 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHHT--CCTTCCCTTCCCH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCchhhcccCCCH
Confidence 35899999999999999999988777799999999999999 999 999 99999999999 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHH
Q 004089 217 LHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDV 296 (774)
Q Consensus 217 Lh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~i 296 (774)
||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.++
T Consensus 73 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 73 LSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHhCcHHH
Confidence 9999999999999999999999 89999999999999999999999999999999999 599999999999999999999
Q ss_pred HHHHHhhCCCCCccCCCCCCCH
Q 004089 297 ALDLLKLHPTIGRDNIDSRRIV 318 (774)
Q Consensus 297 v~~Ll~~~~~~~~~~d~~g~tp 318 (774)
+++|+++++++. .++..|.||
T Consensus 151 ~~~L~~~~~~~~-~~~~~~~~p 171 (172)
T 3v30_A 151 QQVIENHILKLF-QSNLVPADP 171 (172)
T ss_dssp HHHHHHHHHHHS-CC-------
T ss_pred HHHHHHHHHHHh-cccCCCCCC
Confidence 999999999887 778888877
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=5.4e-28 Score=231.30 Aligned_cols=161 Identities=13% Similarity=0.101 Sum_probs=153.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
.|.||||.|+..|+.++++.|++. +.+++.+|..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t 71 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMW-AAA-----HGQ-IAVVEFLLQNG--ADPQLLGKGRES 71 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTCCC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHH-HHH-----CCC-HHHHHHHHHcC--CCCCCcCCCCCc
Confidence 377999999999999999988866 68899999999999999 999 999 99999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHH
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYD 295 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 295 (774)
|||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+
T Consensus 72 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~ 149 (167)
T 3v31_A 72 ALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-IETDSGYNSMDLAVALGYRS 149 (167)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHH
Confidence 99999999999999999999999 89999999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q 004089 296 VALDLLKLHPTIG 308 (774)
Q Consensus 296 iv~~Ll~~~~~~~ 308 (774)
++++|+++++++.
T Consensus 150 ~~~~L~~~~~~~~ 162 (167)
T 3v31_A 150 VQQVIESHLLKLL 162 (167)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876654
No 57
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=7.9e-28 Score=233.06 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=155.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
.+.++||.|+..|+.++++.|++..+.+++.+|..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t 74 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHW-ACR-----EGR-SAVVEMLIMRG--ARINVMNRGDDT 74 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHH-HHH-----cCc-HHHHHHHHHcC--CCCCCcCCCCCC
Confidence 367999999999999999999998899999999999999999 999 999 99999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHH
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYD 295 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~ 295 (774)
|||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~ 152 (179)
T 3f6q_A 75 PLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKAKAPLREL 152 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTSCCGGGGSCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999 89999999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q 004089 296 VALDLLKLHPTIG 308 (774)
Q Consensus 296 iv~~Ll~~~~~~~ 308 (774)
++++|++.|++++
T Consensus 153 ~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 153 LRERAEKMGQNLN 165 (179)
T ss_dssp HHHHHHHTTCCCS
T ss_pred HHHHHHHhhcCcc
Confidence 9999999999987
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=6.3e-28 Score=236.60 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=151.6
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCC
Q 004089 134 YYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHG 213 (774)
Q Consensus 134 ~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g 213 (774)
+..|+||||+|+..|+.++++.|++. +.+++.+|..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g 101 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIW-AVK-----NNR-LGIAEKLLSKG--SNVNTKDFSG 101 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHHT--CCTTCCCTTS
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHH-HHH-----cCC-HHHHHHHHHCC--CCCCCCCCCC
Confidence 44599999999999999999988865 78899999999999999 999 999 99999999999 9999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhch
Q 004089 214 RTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARL 293 (774)
Q Consensus 214 ~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~ 293 (774)
.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 102 KTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASARIFGR 179 (192)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTC
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCc
Confidence 9999999999999999999999999 89999999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHhhC
Q 004089 294 YDVALDLLKLH 304 (774)
Q Consensus 294 ~~iv~~Ll~~~ 304 (774)
.+++++|++.+
T Consensus 180 ~~~v~~Ll~~~ 190 (192)
T 2rfm_A 180 QEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999875
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=250.97 Aligned_cols=194 Identities=16% Similarity=0.165 Sum_probs=172.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHh
Q 004089 101 LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAM 180 (774)
Q Consensus 101 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~ 180 (774)
+|.|+..++.+.++.+++.+.... . ...+..|+||||+|+..|+.++++.|++.+..+++..+..|.||||+ |+
T Consensus 80 l~~a~~~~~~~~~~~l~~~~~~~~----~-n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~-a~ 153 (276)
T 4hbd_A 80 AHPELVRRHLVTFRAMSARLLDYV----V-NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML-TA 153 (276)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHH----H-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-GG
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhc----C-cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH-HH
Confidence 788899999999999987766421 1 12345699999999999999999988877656999999999999999 99
Q ss_pred ccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCCh
Q 004089 181 LLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHK 260 (774)
Q Consensus 181 ~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~ 260 (774)
.......++ .+++++|++.| .+.+..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.
T Consensus 154 ~~~~~~~~~-~~~v~~Ll~~g--~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~ 229 (276)
T 4hbd_A 154 LATLKTQDD-IETVLQLFRLG--NINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHK 229 (276)
T ss_dssp GCCCCSHHH-HHHHHHHHHHS--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHhhhhhh-HHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCH
Confidence 422222788 99999999999 88888999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHh-hcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCC
Q 004089 261 DTFQYLLK-ETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHP 305 (774)
Q Consensus 261 ~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 305 (774)
+++++|++ .|++++ ..|.+|.||||+|+..|+.+++++|+++..
T Consensus 230 ~iv~~Ll~~~gad~~-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 230 EIAGLLLAVPSCDIS-LTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHHTSTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCCCc-CcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 99999999 899999 599999999999999999999999999853
No 60
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=5.6e-28 Score=230.70 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=150.2
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCC
Q 004089 135 YGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGR 214 (774)
Q Consensus 135 ~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~ 214 (774)
..|.||||.|+..|+.++++.|+...+.+++..+..|.||||+ |+. .|+ .+++++|+++| ++++.+|..|.
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~ 76 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF-AAG-----YNR-VSVVEYLLQHG--ADVHAKDKGGL 76 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTSC
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHH-HHH-----cCh-HHHHHHHHhcC--CCCCccCCCCC
Confidence 3478999999999999999999988888999999999999999 999 999 99999999999 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchH
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLY 294 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~ 294 (774)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+.+|.||||+|+. ++.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~a~~-~~~ 153 (165)
T 3twr_A 77 VPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD-GDT 153 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTGGGSCT-TCH
T ss_pred CHHHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCChhHhHhc-CCh
Confidence 999999999999999999999999 89999999999999999999999999999999999 599999999999877 889
Q ss_pred HHHHHHHhhCC
Q 004089 295 DVALDLLKLHP 305 (774)
Q Consensus 295 ~iv~~Ll~~~~ 305 (774)
+++++|+++|+
T Consensus 154 ~i~~~L~~~gA 164 (165)
T 3twr_A 154 DIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHhhccc
Confidence 99999999875
No 61
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=2e-27 Score=227.94 Aligned_cols=158 Identities=25% Similarity=0.269 Sum_probs=149.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCC
Q 004089 135 YGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGR 214 (774)
Q Consensus 135 ~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~ 214 (774)
..+.++||.|++.|+.++++.|++ .+.+++.+|..|.||||+ |+. .|+ .+++++|+++| ++++.+|..|.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~ 81 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHL-AAF-----NGH-LEIVEVLLKNG--ADVNAVDHAGM 81 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTSC
T ss_pred CcccchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCccCCCCC
Confidence 347799999999999999997775 588999999999999999 999 999 99999999999 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchH
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLY 294 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~ 294 (774)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.
T Consensus 82 t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~ 159 (169)
T 2y1l_E 82 TPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNE 159 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCCH
Confidence 999999999999999999999999 89999999999999999999999999999999998 5999999999999999999
Q ss_pred HHHHHHHhhC
Q 004089 295 DVALDLLKLH 304 (774)
Q Consensus 295 ~iv~~Ll~~~ 304 (774)
+++++|++.|
T Consensus 160 ~~~~~L~~~G 169 (169)
T 2y1l_E 160 DLAEILQKLN 169 (169)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHcC
Confidence 9999999875
No 62
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=4.5e-28 Score=252.04 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=171.0
Q ss_pred CCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcH
Q 004089 171 HKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLP 250 (774)
Q Consensus 171 g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp 250 (774)
+.+++|. |+. .|+ .+.++.+++.+.+..+|.+|..|+||||+|+..|+.+++++|++.|+..++..|..|.||
T Consensus 76 ~~~~l~~-a~~-----~~~-~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp 148 (276)
T 4hbd_A 76 CRSDAHP-ELV-----RRH-LVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSP 148 (276)
T ss_dssp HSTTCCH-HHH-----HHH-HHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCH
T ss_pred hccCCCH-HHH-----HHH-HHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCH
Confidence 3589999 999 999 999999999883344999999999999999999999999999999984389999999999
Q ss_pred HHHHH-----HhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhC
Q 004089 251 VQLAA-----LYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKK 325 (774)
Q Consensus 251 L~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 325 (774)
||+|+ ..++.+++++|++.|...+ ..+..|.||||+|+..|+.+++++|++.|++++ .+|.+|+
T Consensus 149 L~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d~~G~--------- 217 (276)
T 4hbd_A 149 IMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGS--------- 217 (276)
T ss_dssp HHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSC---------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCC---------
Confidence 99999 6789999999999998877 588999999999999999999999999999886 5555544
Q ss_pred CCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHH
Q 004089 326 PYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRM 405 (774)
Q Consensus 326 ~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (774)
T Consensus 218 -------------------------------------------------------------------------------- 217 (276)
T 4hbd_A 218 -------------------------------------------------------------------------------- 217 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccC
Q 004089 406 LWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQD 485 (774)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~ 485 (774)
||||+|+..|+.++|++|++.....++.+|..
T Consensus 218 ------------------------------------------------TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~ 249 (276)
T 4hbd_A 218 ------------------------------------------------TALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249 (276)
T ss_dssp ------------------------------------------------CHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTT
T ss_pred ------------------------------------------------CHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCC
Confidence 55556677788999999999444448899999
Q ss_pred CchHHHHHHhcCchHHHHHHHhcC
Q 004089 486 EHRIFDLAVLHRREKVFNLIHGVN 509 (774)
Q Consensus 486 G~T~LH~A~~~g~~~iv~~Ll~~~ 509 (774)
|+||||+|+.+|+.+++++|++..
T Consensus 250 g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 250 GSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999999999999865
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=2.2e-27 Score=225.75 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=146.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcH
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTA 216 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~Tp 216 (774)
..||||.|+..|+.++++.|+ +.+.+++.+|..|+||||+ |+. |+ .+++++|++.| ++++.+|..|.||
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~-A~~------~~-~~~v~~Ll~~g--~~~~~~~~~g~t~ 73 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQV-MKL------GN-PEIARRLLLRG--ANPDLKDRTGFAV 73 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHH-CCS------SC-HHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred HhhHHHHHHHcCCHHHHHHHH-hCCCCccccCccCccHHHH-HHc------Cc-HHHHHHHHHcC--CCCCCCCCCCCCH
Confidence 559999999999999999877 4688999999999999999 765 88 99999999999 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCC-ccccCCCCchHHHHHHhhchHH
Q 004089 217 LHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGV-DIYSGNDGALVLANLIHARLYD 295 (774)
Q Consensus 217 Lh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~Lh~A~~~~~~~ 295 (774)
||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++. + ..+..|.||||+|+..|+.+
T Consensus 74 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~l~~A~~~~~~~ 151 (162)
T 1ihb_A 74 IHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG-HRNHKGDTACDLARLYGRNE 151 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC-CcCCCCCcHHHHHHHcCCHH
Confidence 9999999999999999999999 8999999999999999999999999999999874 6 58999999999999999999
Q ss_pred HHHHHHhhCCC
Q 004089 296 VALDLLKLHPT 306 (774)
Q Consensus 296 iv~~Ll~~~~~ 306 (774)
++++|+++|++
T Consensus 152 ~~~~Ll~~GAd 162 (162)
T 1ihb_A 152 VVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhCCC
Confidence 99999999874
No 64
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=3.4e-30 Score=278.00 Aligned_cols=282 Identities=12% Similarity=0.024 Sum_probs=192.8
Q ss_pred HHHHHH-hCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCC--ccccccCCCCChHHH
Q 004089 101 LCRMIE-INDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPD--ALTDKIDGHKTIFHL 177 (774)
Q Consensus 101 L~~A~~-~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~--~~~~~~~~g~TpLh~ 177 (774)
+++|.. .++.+..+.+++... .+.||||+||+.|+.++++.|++.... ..+..+..|.||||+
T Consensus 69 ~~~a~~~~~~~~~~~~l~~~g~--------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~ 134 (376)
T 2aja_A 69 LYYAHYNRNAKQLWSDAHKKGI--------------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 134 (376)
T ss_dssp HHHHHTTTTCTTHHHHHHHHTC--------------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHcCC--------------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHH
Confidence 666666 467788877774321 245999999999999999988765331 112334557899999
Q ss_pred HHhccccccCCcHHHHHHHHHHccCccc---cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--cccCCCcHHH
Q 004089 178 IAMLLVDVESDEGTCLVDNLASIVVPEA---LARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNV--RDNEGTLPVQ 252 (774)
Q Consensus 178 ~A~~~~~~~~g~~~~~v~~Ll~~g~~~~---~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~--~d~~g~tpL~ 252 (774)
||. .|+ .++|++|+++| ++ .+..+.+ .||||+||..|+.++|++|+++|++ ++. .|..|.||||
T Consensus 135 -Aa~-----~G~-~eiv~~Ll~~g--ad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~ 203 (376)
T 2aja_A 135 -AAE-----NGH-LHVLNRLCELA--PTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFR 203 (376)
T ss_dssp -HHH-----TTC-HHHHHHHHHSC--TTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHH
T ss_pred -HHH-----cCC-HHHHHHHHhCC--CCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHH
Confidence 999 999 99999999999 54 2222233 9999999999999999999999998 676 8899999999
Q ss_pred HHH-HhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCC
Q 004089 253 LAA-LYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFAS 331 (774)
Q Consensus 253 ~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s 331 (774)
+|+ ..|+.++|++|++.|+ .|.||||+|+..|+.+++++|++.|+++. ..| ++++.|+..|..--
T Consensus 204 ~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~-~~~----~~l~~A~~~g~~~v- 269 (376)
T 2aja_A 204 WAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLK-EMH----DAFKLSNPDGVFDL- 269 (376)
T ss_dssp HHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHH-HHH----TTTTTTSSSSCCCC-
T ss_pred HHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcccc-ccc----HHHHHHHHCCChhh-
Confidence 999 9999999999999752 38999999999999999999999988764 222 35666666552100
Q ss_pred CCchhhhHHHHhhccccccccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHh
Q 004089 332 GSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLM 411 (774)
Q Consensus 332 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (774)
..
T Consensus 270 ------------------------------------------v~------------------------------------ 271 (376)
T 2aja_A 270 ------------------------------------------VT------------------------------------ 271 (376)
T ss_dssp ------------------------------------------SS------------------------------------
T ss_pred ------------------------------------------hc------------------------------------
Confidence 00
Q ss_pred hcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCcc----ccccccCCc
Q 004089 412 RLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNS----AHLFAQDEH 487 (774)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~----~~~~d~~G~ 487 (774)
. ........+++.+.. +...+..+.+++|++..... .....+.+.
T Consensus 272 --------~----~~~~~~~~~~~~li~-------------------~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~ 320 (376)
T 2aja_A 272 --------K----SECLQGFYMLRNLIR-------------------RNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 320 (376)
T ss_dssp --------H----HHHHHHHHHHHHHHH-------------------HCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred --------H----HhhhhhHHHHHHHHH-------------------cchhhHHHHHHHHHhChhhhhhhccCCCCCCcc
Confidence 0 000000011111111 11224577888888643210 122345678
Q ss_pred hHHHHHHhcCchHHHHHHHhcCcccccccccccCCCchhhhhhccCCCC
Q 004089 488 RIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNILHLAGRLVPSS 536 (774)
Q Consensus 488 T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~g~~~ 536 (774)
||||+|++.|+.+++++|++.+ ..+|..|+||+.+|.+.|+.+
T Consensus 321 ~~L~~A~~~g~~e~v~lLl~~~------~v~~~~~~~~~~~~~~~~~~~ 363 (376)
T 2aja_A 321 ELLRLALRLGNQGACALLLSIP------SVLALTKANNYYINETGGRLD 363 (376)
T ss_dssp HHHHHHHHHTCTTHHHHHTTSH------HHHHSCC--------------
T ss_pred HHHHHHHHcCcHHHHHHHHcCh------HHHHHHHHhcccccccccccc
Confidence 9999999999999999999865 678899999999999999853
No 65
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=8e-27 Score=220.36 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=144.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcH
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTA 216 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~Tp 216 (774)
+.||||.|+..|+.++++.|++..+.+++.+|..|.||||+ | . .|+ .+++++|++.| ++++.+|..|.||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~-~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t~ 71 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-M-M-----FGS-TAIALELLKQG--ASPNVQDTSGTSP 71 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-S-C-----TTC-HHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-H-H-----cCC-HHHHHHHHHCC--CCCCCcCCCCCCH
Confidence 46999999999999999999988677999999999999999 4 5 689 99999999999 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHH
Q 004089 217 LHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDV 296 (774)
Q Consensus 217 Lh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~i 296 (774)
||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++. ++++ ..+.+|.||||+|+..|+.++
T Consensus 72 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 72 VHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHHHHHHSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHHHHHHcCcHHH
Confidence 9999999999999999999999 899999999999999999999999999999 8888 599999999999999999999
Q ss_pred HHHHHhh
Q 004089 297 ALDLLKL 303 (774)
Q Consensus 297 v~~Ll~~ 303 (774)
+++|+++
T Consensus 149 v~~Ll~~ 155 (156)
T 1bd8_A 149 VDILQGH 155 (156)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999875
No 66
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=5.8e-27 Score=225.28 Aligned_cols=170 Identities=19% Similarity=0.146 Sum_probs=146.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhc
Q 004089 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHAR 292 (774)
Q Consensus 213 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~ 292 (774)
+.||||.|+..|+.++++.|++.++..++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence 56999999999999999999999998789999999999999999999999999999999999 58999999999999999
Q ss_pred hHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCccccccccccc
Q 004089 293 LYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVENLT 372 (774)
Q Consensus 293 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (774)
+.+++++|+++|++++ .+|.+
T Consensus 81 ~~~~v~~Ll~~g~~~~-~~~~~---------------------------------------------------------- 101 (172)
T 3v30_A 81 YTDIVGLLLERDVDIN-IYDWN---------------------------------------------------------- 101 (172)
T ss_dssp CHHHHHHHHTTTCCTT-CCCTT----------------------------------------------------------
T ss_pred CHHHHHHHHHcCCCCC-CCCCC----------------------------------------------------------
Confidence 9999999999998876 44444
Q ss_pred ccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccCCc
Q 004089 373 VTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRDRL 452 (774)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~g 452 (774)
|
T Consensus 102 -------------------------------------------------------------------------------g 102 (172)
T 3v30_A 102 -------------------------------------------------------------------------------G 102 (172)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred chHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCCCch
Q 004089 453 LGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLGNNI 525 (774)
Q Consensus 453 ~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G~Tp 525 (774)
.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.+ ..+..++..|.||
T Consensus 103 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~---~~~~~~~~~~~~p 171 (172)
T 3v30_A 103 GTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHI---LKLFQSNLVPADP 171 (172)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH---HHHSCC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH---HHHhcccCCCCCC
Confidence 4566667777889999999998877 7889999999999999999999999999988 7788888888887
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-28 Score=248.38 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=162.4
Q ss_pred HHHHHHccCcccccc---ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhc
Q 004089 194 VDNLASIVVPEALAR---QNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKET 270 (774)
Q Consensus 194 v~~Ll~~g~~~~~~~---~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 270 (774)
++.|++.| ++++. .+..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 1 v~~ll~~~--~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKA--GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp -----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccC--CCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 46788888 65544 445677889999999999999999999999 8999999999999999999999999999999
Q ss_pred CCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhcccccc
Q 004089 271 HGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARK 350 (774)
Q Consensus 271 ~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~ 350 (774)
++++ ..+..|+||||+|+..|+.+++++|++.|++++...+.+|+||||+|+
T Consensus 78 a~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~--------------------------- 129 (229)
T 2vge_A 78 ANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD--------------------------- 129 (229)
T ss_dssp CCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCC---------------------------
T ss_pred CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHH---------------------------
Confidence 9999 599999999999999999999999999999987322346666655441
Q ss_pred ccCCCCCCCCCcccccccccccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHH
Q 004089 351 ELVPSIQTNDDETVDRDVENLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRT 430 (774)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (774)
T Consensus 130 -------------------------------------------------------------------------------- 129 (229)
T 2vge_A 130 -------------------------------------------------------------------------------- 129 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhccccCCccccCCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCc
Q 004089 431 VEIVRIICQGVIWTNPENRDRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNF 510 (774)
Q Consensus 431 ~~~L~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~ 510 (774)
|+..|+.+++++|++.+++ ++..|..|.||+|.++..+.. ++|++.+
T Consensus 130 ----------------------------a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll~~g- 176 (229)
T 2vge_A 130 ----------------------------PYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSFREG- 176 (229)
T ss_dssp ----------------------------TTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCBCTT-
T ss_pred ----------------------------HHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---ccCcccc-
Confidence 0556778999999999887 788899999999976665543 5667766
Q ss_pred ccccccccccCCCchhhhhhccCCCCCCc
Q 004089 511 TTFLFSFRDFLGNNILHLAGRLVPSSEVA 539 (774)
Q Consensus 511 ~~~~~n~~D~~G~TpLHlAa~~g~~~~v~ 539 (774)
...+++.+|.+|+||||+|++.|+.+.|.
T Consensus 177 a~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 177 ESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp CEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred ccccccccCCCcccHHHHHHHcCCcceee
Confidence 23348899999999999999999976553
No 68
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=1.2e-26 Score=218.49 Aligned_cols=150 Identities=19% Similarity=0.132 Sum_probs=137.1
Q ss_pred chHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHH
Q 004089 138 YWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTAL 217 (774)
Q Consensus 138 ~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpL 217 (774)
.|+||.|+..|+.++++.|++. +.+++ .+..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.|||
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t~L 71 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHL-AAQ-----YGH-FSTTEVLLRAG--VSRDARTKVDRTPL 71 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHH-HHH-----HTC-HHHHHHHHTTT--CCTTCCCTTCCCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCCCCCCCCCHH
Confidence 4899999999999999988866 45555 57888999999 999 999 99999999999 89999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHH
Q 004089 218 HFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVA 297 (774)
Q Consensus 218 h~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv 297 (774)
|+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++
T Consensus 72 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~i~ 149 (153)
T 1awc_B 72 HMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNEDLA 149 (153)
T ss_dssp HHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHH
Confidence 999999999999999999999 89999999999999999999999999999999988 5899999999999999999999
Q ss_pred HHH
Q 004089 298 LDL 300 (774)
Q Consensus 298 ~~L 300 (774)
++|
T Consensus 150 ~~L 152 (153)
T 1awc_B 150 EIL 152 (153)
T ss_dssp HHH
T ss_pred HHh
Confidence 886
No 69
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=1.1e-26 Score=227.57 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=147.1
Q ss_pred ccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 004089 163 ALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNV 242 (774)
Q Consensus 163 ~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~ 242 (774)
.+|.+|..|+||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 27 ~~n~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~ 96 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMV-ACM-----LGM-ENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNT 96 (192)
T ss_dssp HHTCCCTTCCCHHHH-HHH-----HTC-GGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTC
T ss_pred HHhCcCCCCCCHHHH-HHH-----cCC-HHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCC
Confidence 467788999999999 999 999 99999999999 89999999999999999999999999999999999 899
Q ss_pred cccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 004089 243 RDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTL 322 (774)
Q Consensus 243 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A 322 (774)
+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|+++. .+|..|+||||+|
T Consensus 97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A 174 (192)
T 2rfm_A 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASA 174 (192)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHH
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHH
Confidence 99999999999999999999999999999999 599999999999999999999999999999988 8999999999999
Q ss_pred HhCCC
Q 004089 323 AKKPY 327 (774)
Q Consensus 323 ~~~~~ 327 (774)
+..++
T Consensus 175 ~~~~~ 179 (192)
T 2rfm_A 175 RIFGR 179 (192)
T ss_dssp HHTTC
T ss_pred HHhCc
Confidence 99885
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=4.3e-29 Score=251.96 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=165.8
Q ss_pred CccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccc
Q 004089 126 SEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEA 205 (774)
Q Consensus 126 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~ 205 (774)
+.+.....+..|.||||.|+..|+.++++.|++ .+.+++.+|..|.||||+ |+. .|+ .+++++|++.| ++
T Consensus 10 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~-A~~-----~g~-~~~v~~Ll~~g--a~ 79 (229)
T 2vge_A 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHN-AIC-----GAN-YSIVDFLITAG--AN 79 (229)
T ss_dssp CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CC
T ss_pred CCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHCC--CC
Confidence 444444455568899999999999999998885 578999999999999999 999 999 99999999999 99
Q ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc-cCCCcHHHHH--HHhCChHHHHHHHhhcCCCccccCCCCc
Q 004089 206 LARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRD-NEGTLPVQLA--ALYGHKDTFQYLLKETHGVDIYSGNDGA 282 (774)
Q Consensus 206 ~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d-~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 282 (774)
++.+|..|+||||+|+..|+.+++++|+++|++ ++.++ ..|.||||+| +..|+.+++++|++.|++++ ..+..|.
T Consensus 80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~-~~~~~~~ 157 (229)
T 2vge_A 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG-LMNSGAV 157 (229)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT-TSGGGEE
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc-cccCCch
Confidence 999999999999999999999999999999999 78776 6999999999 99999999999999999999 4889999
Q ss_pred hHHHHHHhhchHHHHHHHHhhCCCC-CccCCCCCCCHHHHHHhCCC
Q 004089 283 LVLANLIHARLYDVALDLLKLHPTI-GRDNIDSRRIVLKTLAKKPY 327 (774)
Q Consensus 283 t~Lh~A~~~~~~~iv~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~~~ 327 (774)
||+|.++..+. .++|++.|+++ ...+|.+|+||||+|+..++
T Consensus 158 ~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 158 YALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp EESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred HHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCC
Confidence 99997665543 36778888873 23789999999999999884
No 71
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=2.8e-26 Score=219.32 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=135.0
Q ss_pred CCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCc
Q 004089 170 GHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTL 249 (774)
Q Consensus 170 ~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~t 249 (774)
.|.||||. |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++..|..|.|
T Consensus 2 ~~~t~L~~-A~~-----~g~-~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 71 (167)
T 3v31_A 2 ANSLSVHQ-LAA-----QGE-MLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRES 71 (167)
T ss_dssp TTCCCHHH-HHH-----TTC-HHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred CCcchHHH-HHH-----CCC-HHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCc
Confidence 46899999 999 999 99999999999 89999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCC
Q 004089 250 PVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKP 326 (774)
Q Consensus 250 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 326 (774)
|||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|+++. .+|.+|+||||+|+..+
T Consensus 72 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~ 146 (167)
T 3v31_A 72 ALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-IETDSGYNSMDLAVALG 146 (167)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcC
Confidence 9999999999999999999999999 599999999999999999999999999999887 67777777776666554
No 72
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.2e-28 Score=265.89 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=154.5
Q ss_pred CCchhhHHhHh-CCChhhHHHHHHhhHHHHhhcCCCCCCccchhHHHHHHHHhCCHHHHHHHHHHHHhcccCcccccccc
Q 004089 56 GPYCLLYAMIE-SNDWQGVEDFVKQTKEAQSSKDAQGNEYYDLSWTLCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEY 134 (774)
Q Consensus 56 g~t~Lh~Aa~~-~~~~~~~~~~l~~~~~~L~~~g~d~~~~~~~~~tL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 134 (774)
+.+++++|+.. ++ .+..+++.++|.+.+ ++||+|++.|+.++++.|++.+. ........+
T Consensus 65 ~ll~~~~a~~~~~~---------~~~~~~l~~~g~~~~------T~Lh~Aa~~G~~e~v~~Ll~~ga----~~~~~~~~~ 125 (376)
T 2aja_A 65 QLLCLYYAHYNRNA---------KQLWSDAHKKGIKSE------VICFVAAITGCSSALDTLCLLLT----SDEIVKVIQ 125 (376)
T ss_dssp HHHHHHHHHTTTTC---------TTHHHHHHHHTCCHH------HHHHHHHHHCCHHHHHHHTTC------CCSSCC--C
T ss_pred HHHHHHHHHhcCCC---------HHHHHHHHHcCCCcC------CHHHHHHHcCCHHHHHHHHHcCC----cHHHHHHhc
Confidence 56788888774 44 455667777777654 34999999999999999995443 111111222
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhhCCC-----ccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccc-
Q 004089 135 YGRYWPLYKMTQKNDWRGVEDFVGEHPD-----ALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALAR- 208 (774)
Q Consensus 135 ~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~-----~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~- 208 (774)
..|.||||+||..|+.++|++|++. ++ +++..+ .||||+ ||. .|+ .++|++|+++| ++++.
T Consensus 126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~---~TpLh~-Aa~-----~G~-~eiv~~Ll~~g--a~~~~~ 192 (376)
T 2aja_A 126 AENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN---YHAFRL-AAE-----NGH-LHVLNRLCELA--PTEATA 192 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH---HHHHHH-HHH-----TTC-HHHHHHHHHSC--GGGHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC---CCHHHH-HHH-----CCC-HHHHHHHHHcC--Cccchh
Confidence 3478999999999999999987755 54 343333 899999 999 999 99999999999 88877
Q ss_pred -ccCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHH
Q 004089 209 -QNRHGRTALHFCA-AKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLA 286 (774)
Q Consensus 209 -~~~~g~TpLh~A~-~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh 286 (774)
+|..|.||||+|+ ..|+.++|++|++.|++ |.||||+|+..|+.+++++|+++|++++. . .++++
T Consensus 193 ~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~~ga~~~~-~----~~~l~ 259 (376)
T 2aja_A 193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIARHVNRLKE-M----HDAFK 259 (376)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHHHHHHHHH-H----HTTTT
T ss_pred ccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHhcCccccc-c----cHHHH
Confidence 8999999999999 99999999999997642 89999999999999999999999876652 2 34777
Q ss_pred HHHhhchHHH
Q 004089 287 NLIHARLYDV 296 (774)
Q Consensus 287 ~A~~~~~~~i 296 (774)
.|+..|+.++
T Consensus 260 ~A~~~g~~~v 269 (376)
T 2aja_A 260 LSNPDGVFDL 269 (376)
T ss_dssp TTSSSSCCCC
T ss_pred HHHHCCChhh
Confidence 7887777653
No 73
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=8.9e-26 Score=214.53 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=141.1
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHH
Q 004089 97 LSWTLCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFH 176 (774)
Q Consensus 97 ~~~tL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh 176 (774)
.+.+||.|+..|+.+.++.|++. +.+.+ ..+..|+||||+|+. |+.++++.|++ .+.+++.+|..|.||||
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~----~~~~~---~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQN----NVNVN---AQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRTGFAVIH 75 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTS----CCCTT---CCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhC----CCCcc---ccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCCCCCCCHHH
Confidence 44569999999999999999942 22222 223459999999999 99999997775 58999999999999999
Q ss_pred HHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHH
Q 004089 177 LIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAAL 256 (774)
Q Consensus 177 ~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~ 256 (774)
+ |+. .|+ .+++++|+++| ++++.+|..|.||||+|++.|+.+++++|+++|++.++.+|..|.||||+|+.
T Consensus 76 ~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~ 146 (162)
T 1ihb_A 76 D-AAR-----AGF-LDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 146 (162)
T ss_dssp H-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred H-HHH-----cCC-HHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH
Confidence 9 999 999 99999999999 99999999999999999999999999999999998669999999999999999
Q ss_pred hCChHHHHHHHhhcCC
Q 004089 257 YGHKDTFQYLLKETHG 272 (774)
Q Consensus 257 ~g~~~~v~~Ll~~~~~ 272 (774)
.|+.+++++|+++|+|
T Consensus 147 ~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 147 YGRNEVVSLMQANGAG 162 (162)
T ss_dssp TTCHHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHhCCC
Confidence 9999999999999875
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=3.4e-25 Score=208.52 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=138.0
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHH
Q 004089 98 SWTLCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHL 177 (774)
Q Consensus 98 ~~tL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~ 177 (774)
+.+||.|++.|+.+.++.|++.+. + ...+..|.||||+|+..|+.++++.|+ +.+.+++.++..|.||||+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~----~----~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~ 73 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA----P----FTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHM 73 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC----C----CCCCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC----C----CCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHH
Confidence 445999999999999999996543 2 223556999999999999999999777 5688999999999999999
Q ss_pred HHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHh
Q 004089 178 IAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALY 257 (774)
Q Consensus 178 ~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~ 257 (774)
|+. .|+ .+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..
T Consensus 74 -A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 74 -AAS-----EGH-ANIVEVLLKHG--ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp -HHH-----HTC-HHHHHHHHTTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred -HHH-----cCh-HHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 999 999 99999999999 99999999999999999999999999999999999 899999999999999999
Q ss_pred CChHHHHHH
Q 004089 258 GHKDTFQYL 266 (774)
Q Consensus 258 g~~~~v~~L 266 (774)
|+.+++++|
T Consensus 144 ~~~~i~~~L 152 (153)
T 1awc_B 144 GNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 999999987
No 75
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=3.9e-25 Score=211.87 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=140.5
Q ss_pred CCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCC
Q 004089 169 DGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGT 248 (774)
Q Consensus 169 ~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~ 248 (774)
..+.||||. |+. .|+ .++|++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++..|..|.
T Consensus 12 ~~~~~~l~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 81 (169)
T 2y1l_E 12 SDLGKKLLE-AAR-----AGR-DDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGM 81 (169)
T ss_dssp -CHHHHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred CcccchHHH-HHH-----cCC-HHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCC
Confidence 345899999 999 999 99999999999 99999999999999999999999999999999999 899999999
Q ss_pred cHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCC
Q 004089 249 LPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPY 327 (774)
Q Consensus 249 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~ 327 (774)
||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|+++. .+|..|.||||+|+..++
T Consensus 82 t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 82 TPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCC
Confidence 99999999999999999999999999 599999999999999999999999999999987 899999999999999884
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=7.1e-27 Score=237.64 Aligned_cols=179 Identities=16% Similarity=0.091 Sum_probs=133.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
.|.||||.|+..|+.+.++.|+ ++|.+++.. ..|.||||. |+. .|+ .++|++|++.| ++++.+|..|.|
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll-~~g~~~~~~-~~~~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~d~~g~t 72 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERI-AHGMRVKFN-PLPLALLLD-SSL-----EGE-FDLVQRIIYEV--DDPSLPNDEGIT 72 (239)
T ss_dssp -----------------------------------CHHHHHH-HHH-----HTC-HHHHHHHTSTT--SSCCCCCTTSCC
T ss_pred cccccCchhhhhhhHHHHHHHh-ccCCCcccC-chhhHHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCCcCCCCCC
Confidence 4899999999999999999776 568888754 778999999 999 999 99999999999 899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCc-hHHHHH--Hhhc
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGA-LVLANL--IHAR 292 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A--~~~~ 292 (774)
|||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++. .+..|. ||||+| +..|
T Consensus 73 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 73 ALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA-MTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHCCSSSTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce-ecCCCCcchHHHHHHhhhc
Confidence 99999999999999999999999 899999999999999999999999999999999994 777766 999999 8889
Q ss_pred hHHHHHHHHhhCCCCCc--------cCCCCCCCHHHHHHhCCC
Q 004089 293 LYDVALDLLKLHPTIGR--------DNIDSRRIVLKTLAKKPY 327 (774)
Q Consensus 293 ~~~iv~~Ll~~~~~~~~--------~~d~~g~tpLh~A~~~~~ 327 (774)
+.+++++|++.++++.. ..+..+++|++++.+.|.
T Consensus 151 ~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 99999999999887652 126678888888777763
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=2.9e-25 Score=214.96 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=147.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHh
Q 004089 211 RHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIH 290 (774)
Q Consensus 211 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 290 (774)
..+.+|||.|+..|+.+++++|++.+...++.+|..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence 4578999999999999999999999665589999999999999999999999999999999999 599999999999999
Q ss_pred hchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCccccccccc
Q 004089 291 ARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVEN 370 (774)
Q Consensus 291 ~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (774)
.|+.+++++|++.|++++ .+|.+|
T Consensus 82 ~~~~~~v~~Ll~~g~~~~-~~d~~g------------------------------------------------------- 105 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADIN-AVNEHG------------------------------------------------------- 105 (179)
T ss_dssp TTCHHHHHHHHHTTCCTT-CCCTTS-------------------------------------------------------
T ss_pred cCCHHHHHHHHHcCCCCC-ccCCCC-------------------------------------------------------
Confidence 999999999999998876 454444
Q ss_pred ccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCccccC
Q 004089 371 LTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENRD 450 (774)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 450 (774)
T Consensus 106 -------------------------------------------------------------------------------- 105 (179)
T 3f6q_A 106 -------------------------------------------------------------------------------- 105 (179)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCchHHHHHHhcCchHHHHHHHhcCcccccccccccCC
Q 004089 451 RLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEHRIFDLAVLHRREKVFNLIHGVNFTTFLFSFRDFLG 522 (774)
Q Consensus 451 ~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~T~LH~A~~~g~~~iv~~Ll~~~~~~~~~n~~D~~G 522 (774)
.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++.+ .+++..+.++
T Consensus 106 --~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g---~~~~~~~~~~ 171 (179)
T 3f6q_A 106 --NVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEKMG---QNLNRIPYKD 171 (179)
T ss_dssp --CCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT---CCCSCBCCCC
T ss_pred --CCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHHhh---cCcccCCccc
Confidence 4555566677788999999999877 8899999999999999999999999999998 7777766554
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=1.1e-25 Score=228.73 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=126.5
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHH
Q 004089 210 NRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLI 289 (774)
Q Consensus 210 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~ 289 (774)
+..|.||||.|++.|+.++++.|+++|++ ++. +..|.||||.|+..|+.+++++|++.|++++ ..+..|.||||+|+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHH
Confidence 34699999999999999999999999999 564 4779999999999999999999999999998 59999999999999
Q ss_pred hhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCCCCcCCCCchhhhHHHHhhccccccccCCCCCCCCCcccccccc
Q 004089 290 HARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKPYAFASGSRLGRLQRLIYNCIPARKELVPSIQTNDDETVDRDVE 369 (774)
Q Consensus 290 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~s~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (774)
..|+.+++++|+++|++++ .+|.+|+
T Consensus 79 ~~g~~~~v~~Ll~~ga~~~-~~d~~g~----------------------------------------------------- 104 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNVN-AADSDGW----------------------------------------------------- 104 (239)
T ss_dssp HHTCHHHHHHHHHHTCCTT-CCCTTCC-----------------------------------------------------
T ss_pred HcCCHHHHHHHHHcCCCCC-ccCCCCC-----------------------------------------------------
Confidence 9999999999999999886 5555554
Q ss_pred cccccccccCCCCCCCCCCcccccccchhhhHhHHHHHHHHhhcCCchHHHHHhhhhhhHHHHHHHHHhhccccCCcccc
Q 004089 370 NLTVTSKIHSKKPTPFGSTQQIPTTYGAMLHKLHRMLWNVLMRLGPSIKVIHDQKLTHMRTVEIVRIICQGVIWTNPENR 449 (774)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 449 (774)
T Consensus 105 -------------------------------------------------------------------------------- 104 (239)
T 1ycs_B 105 -------------------------------------------------------------------------------- 104 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchHHHHHHHcCcHHHHHHHHHhCCccccccccCCc-hHHHHH--HhcCchHHHHHHHhcCcccccccc---------
Q 004089 450 DRLLGAMFTAARLGIPEFVNEFIMAYDNSAHLFAQDEH-RIFDLA--VLHRREKVFNLIHGVNFTTFLFSF--------- 517 (774)
Q Consensus 450 ~~g~tpLh~Aa~~g~~eiv~~Ll~~~~~~~~~~d~~G~-T~LH~A--~~~g~~~iv~~Ll~~~~~~~~~n~--------- 517 (774)
||||+||..|+.+++++|++++++ ++.+|..|. ||||+| +..|+.+++++|++.+ .+++.
T Consensus 105 ----tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~---a~~~~~~~~~~~al 176 (239)
T 1ycs_B 105 ----TPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ---EKMGIMNKGVIYAL 176 (239)
T ss_dssp ----CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH---HHTTTTGGGEEEES
T ss_pred ----CHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhh---hcccccccceEEEE
Confidence 455566677788999999999888 677777776 999999 8899999999999987 33333
Q ss_pred cccCCCchhhhhhccCCC
Q 004089 518 RDFLGNNILHLAGRLVPS 535 (774)
Q Consensus 518 ~D~~G~TpLHlAa~~g~~ 535 (774)
.|..|.||+|+|.+.|..
T Consensus 177 ~d~~~~~~~eLa~~~G~~ 194 (239)
T 1ycs_B 177 WDYEPQNDDELPMKEGDC 194 (239)
T ss_dssp SCBCCSSTTBCCBCSSCE
T ss_pred eccCCCCCCcccccCCCE
Confidence 378899999999999874
No 79
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=3.5e-25 Score=203.91 Aligned_cols=134 Identities=19% Similarity=0.121 Sum_probs=129.2
Q ss_pred CCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 004089 161 PDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLT 240 (774)
Q Consensus 161 ~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~ 240 (774)
+.+++.++..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+. |+.+++++|+++|++ +
T Consensus 2 ~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~ 70 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLAT-AAA-----RGQ-VETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-P 70 (136)
T ss_dssp CCCCSCCCCCCSCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-S
T ss_pred CCCccCCCCCCccHHHH-HHH-----cCC-HHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-C
Confidence 56889999999999999 999 999 99999999999 9999999999999999999 999999999999999 8
Q ss_pred cccccC-CCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCC
Q 004089 241 NVRDNE-GTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPT 306 (774)
Q Consensus 241 ~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 306 (774)
+.+|.. |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++
T Consensus 71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999 9999999999999999999999999999 5999999999999999999999999999875
No 80
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=1.1e-24 Score=207.84 Aligned_cols=159 Identities=20% Similarity=0.155 Sum_probs=139.3
Q ss_pred cchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCC
Q 004089 95 YDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKT 173 (774)
Q Consensus 95 ~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~T 173 (774)
+..+.+ ||.|++.|+.+.++.|++... .+ ....+..|+||||+|+..|+.++++.|++ .+.+++.+|..|.|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t 77 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQS-----VN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLV 77 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTT-----TT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCC-----CC-ccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCCCCC
Confidence 455666 999999999999999984211 11 12233458899999999999999997774 58899999999999
Q ss_pred hHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHH
Q 004089 174 IFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQL 253 (774)
Q Consensus 174 pLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~ 253 (774)
|||+ |+. .|+ .+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+
T Consensus 78 ~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~ 147 (165)
T 3twr_A 78 PLHN-ACS-----YGH-YEVAELLVKHG--AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDL 147 (165)
T ss_dssp HHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGG
T ss_pred HHHH-HHH-----cCc-HHHHHHHHhCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHh
Confidence 9999 999 999 99999999999 99999999999999999999999999999999999 89999999999999
Q ss_pred HHHhCChHHHHHHHhhcC
Q 004089 254 AALYGHKDTFQYLLKETH 271 (774)
Q Consensus 254 A~~~g~~~~v~~Ll~~~~ 271 (774)
|+. |+.+++++|+++|+
T Consensus 148 a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 148 VKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp SCT-TCHHHHHHHHTC--
T ss_pred Hhc-CChHHHHHHhhccc
Confidence 877 99999999999874
No 81
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=3.2e-24 Score=202.39 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=137.3
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHH
Q 004089 98 SWTLCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHL 177 (774)
Q Consensus 98 ~~tL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~ 177 (774)
+.+||+|+..|+.+.++.|++. . ..+. ...+..|+||||+ +..|+.++++.|+ +.|.+++.+|..|.||||+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~----~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~ 74 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-E----LVHP-DALNRFGKTALQV-MMFGSTAIALELL-KQGASPNVQDTSGTSPVHD 74 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-T----CCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHH
T ss_pred chHHHHHHHhCCHHHHHHHHHh-h----CcCc-cccCCCCCcHHHH-HHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHH
Confidence 3459999999999999999964 1 1111 1234459999999 9999999999777 5589999999999999999
Q ss_pred HHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHh
Q 004089 178 IAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALY 257 (774)
Q Consensus 178 ~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~ 257 (774)
|+. .|+ .+++++|+++| ++++.+|..|.||||+|+..|+.+++++|++. ++ ++.+|..|.||||+|+..
T Consensus 75 -A~~-----~~~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~ 143 (156)
T 1bd8_A 75 -AAR-----TGF-LDTLKVLVEHG--ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQR 143 (156)
T ss_dssp -HHH-----TTC-HHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHS
T ss_pred -HHH-----cCc-HHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHc
Confidence 999 999 99999999999 99999999999999999999999999999999 88 899999999999999999
Q ss_pred CChHHHHHHHhh
Q 004089 258 GHKDTFQYLLKE 269 (774)
Q Consensus 258 g~~~~v~~Ll~~ 269 (774)
|+.+++++|+++
T Consensus 144 ~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 144 GAQDLVDILQGH 155 (156)
T ss_dssp CCHHHHHHHHTT
T ss_pred CcHHHHHHHHhh
Confidence 999999999975
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=1.6e-25 Score=217.56 Aligned_cols=156 Identities=8% Similarity=0.007 Sum_probs=137.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCcccccc-CCCCChHHHHHhccccccCCcHH----HHHHHHHHccCccccccccC
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDALTDKI-DGHKTIFHLIAMLLVDVESDEGT----CLVDNLASIVVPEALARQNR 211 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~-~~g~TpLh~~A~~~~~~~~g~~~----~~v~~Ll~~g~~~~~~~~~~ 211 (774)
++++||.|++.|+.+.++.++... ++.++ ..|+||||+ |+. .|+ . +++++|+++| ++++.+|.
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~-A~~-----~~~-~~~~~~iv~~Ll~~G--advn~~d~ 73 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYD-VLR-----NNN-DEARYKISMFLINKG--ADIKSRTK 73 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHH-HTT-----CSC-HHHHHHHHHHHHHTT--CCSSCCCT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHH-HHH-----cCC-cchHHHHHHHHHHCC--CCCCCCCC
Confidence 568899999999999999888654 34555 678999999 999 887 5 5999999999 99999999
Q ss_pred CCCcHHHHHHHcCC------HHHHHHHHHcCCCCccccccCCC-cHHHHHHHhC-----ChHHHHHHHh-hcCCCccccC
Q 004089 212 HGRTALHFCAAKGN------LKAIKVLMKYKPDLTNVRDNEGT-LPVQLAALYG-----HKDTFQYLLK-ETHGVDIYSG 278 (774)
Q Consensus 212 ~g~TpLh~A~~~g~------~~iv~~Ll~~~~~l~~~~d~~g~-tpL~~A~~~g-----~~~~v~~Ll~-~~~~~~~~~~ 278 (774)
.|+||||+|+..|+ .+++++|+++|++ ++.+|..|. ||||+|+..+ +.+++++|++ +|++++ .+|
T Consensus 74 ~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d 151 (186)
T 3t8k_A 74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKD 151 (186)
T ss_dssp TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCC
T ss_pred CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccC
Confidence 99999999999887 6889999999999 899999999 9999999844 4569999999 999999 599
Q ss_pred CCCchHHHHHHhhchHHHHHHHHhhCCC
Q 004089 279 NDGALVLANLIHARLYDVALDLLKLHPT 306 (774)
Q Consensus 279 ~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 306 (774)
..|+||||+|+..|+.+++++|.+....
T Consensus 152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 152 KWGLTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp TTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999987543
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=7.4e-25 Score=206.94 Aligned_cols=146 Identities=18% Similarity=0.097 Sum_probs=120.5
Q ss_pred ccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 004089 165 TDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRD 244 (774)
Q Consensus 165 ~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d 244 (774)
+..+..|.||||+ |+. .|+ .++|++|+++| ++++.+|..|.||||+|+ .|+.+++++|+++|++ ++.+|
T Consensus 6 ~~~~~~~~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d 74 (156)
T 1bi7_B 6 GSSMEPSADWLAT-AAA-----RGR-VEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCAD 74 (156)
T ss_dssp ----CCSTTHHHH-HHH-----HTC-HHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCC
T ss_pred cCCCccchHHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcC
Confidence 4556788999999 999 999 99999999999 999999999999999986 9999999999999999 89999
Q ss_pred cCCCc-HHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 004089 245 NEGTL-PVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLA 323 (774)
Q Consensus 245 ~~g~t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~ 323 (774)
..|.| |||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|+++. .+|..|.||.+-+.
T Consensus 75 ~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-GSNHARIDAAEGPS 152 (156)
T ss_dssp TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred CCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC-ccCcCcCcccccCC
Confidence 99999 9999999999999999999999999 599999999999999999999999999999998 89999999988543
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=3.9e-24 Score=201.95 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=118.4
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCC
Q 004089 134 YYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHG 213 (774)
Q Consensus 134 ~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g 213 (774)
+..|.||||+|+..|+.++++.|++ .+.+++.+|..|.||||+ | . .|+ .+++++|+++| ++++.+|..|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~-A-~-----~~~-~~~v~~Ll~~g--~~~~~~d~~g 77 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQV-M-M-----MGS-ARVAELLLLHG--AEPNCADPAT 77 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTS-S-C-----TTC-HHHHHHHHTTT--CCCCCCCTTT
T ss_pred CccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHH-H-H-----cCC-HHHHHHHHHcC--CCCCCcCCCC
Confidence 3458899999999999999998775 589999999999999999 8 5 699 99999999999 9999999999
Q ss_pred Cc-HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHH
Q 004089 214 RT-ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANL 288 (774)
Q Consensus 214 ~T-pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A 288 (774)
.| |||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||.+.+
T Consensus 78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 78 LTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-GSNHARIDAAEGP 151 (156)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC-ccCcCcCcccccC
Confidence 99 99999999999999999999999 89999999999999999999999999999999999 5899999998744
No 85
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=7e-23 Score=185.21 Aligned_cols=126 Identities=27% Similarity=0.389 Sum_probs=121.7
Q ss_pred CCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCc
Q 004089 170 GHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTL 249 (774)
Q Consensus 170 ~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~t 249 (774)
+|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.|
T Consensus 1 ~g~t~L~~-A~~-----~~~-~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t 70 (126)
T 1n0r_A 1 NGRTPLHL-AAR-----NGH-LEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRT 70 (126)
T ss_dssp CCCCHHHH-HHH-----HTC-HHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred CCccHHHH-HHH-----cCc-HHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCc
Confidence 48999999 999 999 99999999999 99999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCC
Q 004089 250 PVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPT 306 (774)
Q Consensus 250 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 306 (774)
|||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++
T Consensus 71 ~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 71 PLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999998 5999999999999999999999999999975
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=5.3e-23 Score=189.30 Aligned_cols=127 Identities=19% Similarity=0.138 Sum_probs=119.5
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCC-
Q 004089 134 YYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRH- 212 (774)
Q Consensus 134 ~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~- 212 (774)
+..|.||||+|+..|+.++++.|++ .+.+++.+|..|.||||+ |+. |+ .+++++|+++| ++++.+|..
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~-A~~------~~-~~~v~~Ll~~g--~~~~~~~~~~ 77 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQV-MMM------GS-AQVAELLLLHG--AEPNCADPAT 77 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCTTTTT-STT------SC-HHHHHHHHHHT--CCSSCCBTTT
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCCCCCCHHHH-HHc------CC-HHHHHHHHHCC--CCCCCcCCCC
Confidence 3458999999999999999998775 589999999999999999 875 78 99999999999 999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCC
Q 004089 213 GRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272 (774)
Q Consensus 213 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 272 (774)
|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999 899999999999999999999999999999875
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.4e-22 Score=183.25 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=120.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
+|+||||.|+..|+.+++++|++. +.+++.++..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~~~~Ll~~g--~~~~~~~~~g~t 70 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHL-AAR-----NGH-LEVVKLLLEAG--ADVNAKDKNGRT 70 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTSCC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHH-HHH-----cCc-HHHHHHHHHcC--CCCcccCCCCCc
Confidence 388999999999999999988865 78899999999999999 999 999 99999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCC
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHG 272 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 272 (774)
|||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 71 ~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 71 PLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999999999 899999999999999999999999999999875
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=4.7e-23 Score=189.61 Aligned_cols=125 Identities=26% Similarity=0.259 Sum_probs=119.5
Q ss_pred CCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCC
Q 004089 169 DGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGT 248 (774)
Q Consensus 169 ~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~ 248 (774)
..+.||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus 12 ~~~~t~l~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~ 81 (136)
T 2jab_A 12 SDLGKKLLE-AAR-----AGQ-DDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGF 81 (136)
T ss_dssp CHHHHHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred ccccHHHHH-HHH-----hCC-HHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCC
Confidence 446899999 999 999 99999999999 99999999999999999999999999999999999 899999999
Q ss_pred cHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhC
Q 004089 249 LPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLH 304 (774)
Q Consensus 249 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 304 (774)
||||+|+..|+.+++++|+++|++++ ..+.+|.||||+|+..|+.+++++|++.|
T Consensus 82 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 82 TPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999998 59999999999999999999999999875
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=9.1e-23 Score=187.68 Aligned_cols=124 Identities=21% Similarity=0.171 Sum_probs=118.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
.|.||||+|+..|+.++++.|++ .+.+++.+|..|.||||+ |+. .|+ .+++++|+++| ++++.+|..|.|
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~d~~g~t 82 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYL-ATA-----HGH-LEIVEVLLKNG--ADVNAVDAIGFT 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTCCC
T ss_pred cccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCcCCCCCCC
Confidence 47899999999999999997775 588999999999999999 999 999 99999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhc
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKET 270 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 270 (774)
|||+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus 83 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 83 PLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999 8999999999999999999999999999875
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=1.7e-23 Score=203.25 Aligned_cols=156 Identities=8% Similarity=0.022 Sum_probs=133.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCH----HHHHHHHhhCCCccccccCCCCChHH
Q 004089 101 LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDW----RGVEDFVGEHPDALTDKIDGHKTIFH 176 (774)
Q Consensus 101 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~----~~v~~lL~~~~~~~~~~~~~g~TpLh 176 (774)
|+.|++.|+.+.+..++... .+...+..|+||||+|+..|+. ++++.|| +.|+++|.+|..|+||||
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~--------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKG--------YEDKESVLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKEGTTLFF 80 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHS--------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTTCCCTHH
T ss_pred HHHHHHcCCHHHHHHHHhcC--------cccccccCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCCCCcHHH
Confidence 99999999999988887422 2222224599999999999985 4898666 679999999999999999
Q ss_pred HHHhccccccCCc-----HHHHHHHHHHccCccccccccCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCccccc
Q 004089 177 LIAMLLVDVESDE-----GTCLVDNLASIVVPEALARQNRHGR-TALHFCAAKG-----NLKAIKVLMK-YKPDLTNVRD 244 (774)
Q Consensus 177 ~~A~~~~~~~~g~-----~~~~v~~Ll~~g~~~~~~~~~~~g~-TpLh~A~~~g-----~~~iv~~Ll~-~~~~l~~~~d 244 (774)
+ |+. .|+ ..+++++|+++| ++++.+|..|+ ||||+|+..| +.+++++|++ +|++ ++.+|
T Consensus 81 ~-a~~-----~~~~~~~~~~~iv~~Ll~~G--adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d 151 (186)
T 3t8k_A 81 P-LFQ-----GGGNDITGTTELCKIFLEKG--ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKD 151 (186)
T ss_dssp H-HHH-----HCTTCHHHHHHHHHHHHHTT--CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCC
T ss_pred H-HHH-----cCCcchhhHHHHHHHHHHCC--CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccC
Confidence 9 998 765 157899999999 99999999999 9999999954 4679999999 9999 89999
Q ss_pred cCCCcHHHHHHHhCChHHHHHHHhhcCCCc
Q 004089 245 NEGTLPVQLAALYGHKDTFQYLLKETHGVD 274 (774)
Q Consensus 245 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~ 274 (774)
..|.||||+|++.|+.+++++|.++..+.+
T Consensus 152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 152 KWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp TTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999998754443
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=3.4e-23 Score=190.79 Aligned_cols=133 Identities=20% Similarity=0.149 Sum_probs=120.2
Q ss_pred CCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 004089 161 PDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLT 240 (774)
Q Consensus 161 ~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~ 240 (774)
|.++ .+|..|+||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ +
T Consensus 1 G~d~-~~~~~g~t~L~~-A~~-----~~~-~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~ 69 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHI-ASI-----KGD-IPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-V 69 (137)
T ss_dssp ---C-CCCTTCCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred CCCC-CcCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-c
Confidence 3456 678899999999 999 999 99999999999 99999999999999999999999999999999999 8
Q ss_pred cccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCC
Q 004089 241 NVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHP 305 (774)
Q Consensus 241 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 305 (774)
+.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..+..+++++|.+.++
T Consensus 70 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 9999999999999999999999999999999999 599999999999999999999988877654
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=2.7e-22 Score=194.78 Aligned_cols=138 Identities=18% Similarity=0.127 Sum_probs=128.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccccc-CCCC
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQN-RHGR 214 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~-~~g~ 214 (774)
.|.||||.|+..|+.++++.|++ +.+++.+|..|+||||+ |+. .|+ .+++++|+++| ++++.+| ..|+
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--a~~~~~~~~~g~ 111 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLF-VAG-----LGS-DKCVRLLAEAG--ADLDHRDMRGGL 111 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCSSSSC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCcCCCCCCC
Confidence 47899999999999999998886 88999999999999999 999 999 99999999999 9999998 8899
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchH
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLY 294 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~ 294 (774)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|++.++ ...+.+||++|+..|+.
T Consensus 112 tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~ 172 (183)
T 3deo_A 112 TALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLE 172 (183)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHH
T ss_pred CHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHH
Confidence 999999999999999999999999 89999999999999997532 23567999999999999
Q ss_pred HHHHHHHhh
Q 004089 295 DVALDLLKL 303 (774)
Q Consensus 295 ~iv~~Ll~~ 303 (774)
+++++|.++
T Consensus 173 ~i~~~L~~~ 181 (183)
T 3deo_A 173 KVINVLEGQ 181 (183)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999999875
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.6e-23 Score=203.37 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=116.8
Q ss_pred CCcHHHHHHHHHHccCccc---------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHh
Q 004089 187 SDEGTCLVDNLASIVVPEA---------LARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALY 257 (774)
Q Consensus 187 ~g~~~~~v~~Ll~~g~~~~---------~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~ 257 (774)
.|. .+++++|++.+.... ....+..|.||||+|++.|+.++++.|++ +++ ++.+|..|.||||+|+..
T Consensus 10 ~~~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~ 86 (183)
T 3deo_A 10 TAG-EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGL 86 (183)
T ss_dssp EET-TTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHH
T ss_pred hcC-CchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHc
Confidence 555 666666665431111 11235679999999999999999999999 888 899999999999999999
Q ss_pred CChHHHHHHHhhcCCCccccC-CCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCC
Q 004089 258 GHKDTFQYLLKETHGVDIYSG-NDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKP 326 (774)
Q Consensus 258 g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 326 (774)
|+.+++++|+++|++++. .+ .+|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||+|++.+
T Consensus 87 ~~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~ 154 (183)
T 3deo_A 87 GSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREIL 154 (183)
T ss_dssp TCHHHHHHHHHTTCCTTC-CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhc
Confidence 999999999999999984 66 899999999999999999999999999998 89999999999998654
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=208.17 Aligned_cols=140 Identities=19% Similarity=0.178 Sum_probs=123.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCcccc------ccCCCCChHHHHHhccccccC---CcHHHHHHHHHHccCccccc
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDALTD------KIDGHKTIFHLIAMLLVDVES---DEGTCLVDNLASIVVPEALA 207 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~------~~~~g~TpLh~~A~~~~~~~~---g~~~~~v~~Ll~~g~~~~~~ 207 (774)
+.++||.|+..|+.+.++.|+ ..+.+++. .+..|.||||+ |+. . |+ .+++++|+++| ++++
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~-A~~-----~~~~~~-~~iv~~Ll~~g--advn 220 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHL-AVK-----VANQAS-LPLVDFIIQNG--GHLD 220 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSCEECHHHH-HHH-----TCCTTT-HHHHHHHHHHS--SCTT
T ss_pred hHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCCCccHHHH-HHH-----hcccCc-HHHHHHHHhcC--CCCC
Confidence 457899999999999999887 56788887 68889999999 998 7 88 99999999999 9999
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHH
Q 004089 208 RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLAN 287 (774)
Q Consensus 208 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 287 (774)
.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+
T Consensus 221 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~ 292 (301)
T 2b0o_E 221 AKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHV 292 (301)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHH
Confidence 9999999999999999999999999999999 899999999999999999999999999999753 57899999
Q ss_pred HHhhchH
Q 004089 288 LIHARLY 294 (774)
Q Consensus 288 A~~~~~~ 294 (774)
|+..|+.
T Consensus 293 A~~~g~~ 299 (301)
T 2b0o_E 293 DYSWVIS 299 (301)
T ss_dssp -------
T ss_pred HHhcCCc
Confidence 9998863
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=3.4e-22 Score=203.61 Aligned_cols=141 Identities=18% Similarity=0.110 Sum_probs=130.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCcccccccc-CCCC
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQN-RHGR 214 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~-~~g~ 214 (774)
.|.||||+|+..|+.++++.||. +.++|.+|..|.||||+ |+. .|+ .++|++|+++| ++++.++ ..|.
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--a~~~~~~~~~g~ 112 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLF-VAG-----LGS-DKCVRLLAEAG--ADLDHRDMRGGL 112 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCSSSCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHH-HHH-----CCC-HHHHHHHHHcC--CCCCcCCCCCCC
Confidence 47899999999999999998886 88999999999999999 999 999 99999999999 9999998 7799
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchH
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLY 294 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~ 294 (774)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..+ ....+.||||+|+..|+.
T Consensus 113 t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~ 173 (244)
T 3ui2_A 113 TALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGLE 173 (244)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcChH
Confidence 999999999999999999999999 8999999999999998632 235688999999999999
Q ss_pred HHHHHHHhhCCC
Q 004089 295 DVALDLLKLHPT 306 (774)
Q Consensus 295 ~iv~~Ll~~~~~ 306 (774)
+++++|++.+.+
T Consensus 174 ~iv~~L~~~~~~ 185 (244)
T 3ui2_A 174 KVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHEE
T ss_pred HHHHHHHHhccc
Confidence 999999997544
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=1.8e-23 Score=213.13 Aligned_cols=141 Identities=14% Similarity=0.078 Sum_probs=121.4
Q ss_pred CCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCc
Q 004089 170 GHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTL 249 (774)
Q Consensus 170 ~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~t 249 (774)
.+.+++.+ ++. .|+ .+.+..+...+ .+ .+..|.||||+|++.|+.++++.|++ +++ ++.+|..|.|
T Consensus 14 ~~~~~~l~-~~~-----~g~-~~~~~~~~~~~--~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t 79 (244)
T 3ui2_A 14 EGAMEYLI-EWK-----DGH-SPSWVPSSYIA--AD---VVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRT 79 (244)
T ss_dssp TTEEEEEE-EES-----SCC-CCEEEEGGGSC--HH---HHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCB
T ss_pred CCccHHHH-HHH-----cCC-Ccccccccccc--cc---cccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCC
Confidence 34667777 777 777 55554444444 33 34679999999999999999999999 888 8999999999
Q ss_pred HHHHHHHhCChHHHHHHHhhcCCCccccC-CCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHHHhCC
Q 004089 250 PVQLAALYGHKDTFQYLLKETHGVDIYSG-NDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTLAKKP 326 (774)
Q Consensus 250 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 326 (774)
|||+|+..|+.+++++|+++|++++. .+ ..|.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+...
T Consensus 80 ~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~ 155 (244)
T 3ui2_A 80 ALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREIL 155 (244)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHH
Confidence 99999999999999999999999984 66 889999999999999999999999999998 89999999999998543
No 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=3.1e-22 Score=184.31 Aligned_cols=129 Identities=19% Similarity=0.095 Sum_probs=117.0
Q ss_pred cccCCCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccC
Q 004089 132 DEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNR 211 (774)
Q Consensus 132 ~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~ 211 (774)
..+..|+||||+|+..|+.++++.|++ .+.+++.+|..|.||||+ |+. .|+ .+++++|+++| ++++.+|.
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~-A~~-----~~~-~~~~~~Ll~~g--~~~~~~~~ 74 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHE-ACN-----HGH-LKVVELLLQHK--ALVNTTGY 74 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCG
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CcccCcCC
Confidence 345569999999999999999997775 688999999999999999 999 999 99999999999 99999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcC
Q 004089 212 HGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETH 271 (774)
Q Consensus 212 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 271 (774)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus 75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 75 QNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp GGCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 999999999999999999999999999 89999999999999999999999988876643
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.1e-21 Score=176.98 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=104.7
Q ss_pred cCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCC
Q 004089 168 IDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEG 247 (774)
Q Consensus 168 ~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g 247 (774)
+..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus 4 ~~~~~~~l~~-A~~-----~~~-~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g 73 (123)
T 3aaa_C 4 GSMCDKEFMW-ALK-----NGD-LDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHH 73 (123)
T ss_dssp ---CHHHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTS
T ss_pred ccccchHHHH-HHH-----cCC-HHHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCC
Confidence 4567899999 999 999 99999999999 88999999999999999999999999999999999 89999999
Q ss_pred CcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHH
Q 004089 248 TLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVA 297 (774)
Q Consensus 248 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv 297 (774)
.||||+|+..|+.+++++|+++|++++ ..+.+|.||||+|...+..+++
T Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~ll 122 (123)
T 3aaa_C 74 ITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKALL 122 (123)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHHHHHHh
Confidence 999999999999999999999999888 5899999999999666555544
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=5.2e-22 Score=199.14 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=116.6
Q ss_pred ccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccccc
Q 004089 167 KIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKY-KPDLTNVRDN 245 (774)
Q Consensus 167 ~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~l~~~~d~ 245 (774)
.+..|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|++. |++ ++.+|.
T Consensus 69 ~~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~ 138 (222)
T 3ehr_A 69 QAESIDNPLHE-AAK-----RGN-LSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNK 138 (222)
T ss_dssp HEEEESCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCT
T ss_pred ccccccccccc-ccc-----cCc-HHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCC
Confidence 45678999999 999 999 99999999999 99999999999999999999999999999999 888 899999
Q ss_pred CCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCC
Q 004089 246 EGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDS 314 (774)
Q Consensus 246 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~ 314 (774)
.|.||||+|+..|+.+++++|+++|++++ ..+.+|.||||+|+..++.++++.|++.++... ..+.+
T Consensus 139 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~-~~~~~ 205 (222)
T 3ehr_A 139 LGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRT-LSNAE 205 (222)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhh-ccchh
Confidence 99999999999999999999999999999 599999999999999999999999999988765 44444
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=2.5e-21 Score=174.62 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=106.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCc
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRT 215 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~T 215 (774)
.|.||||+|+..|+.++++.|++ .+.+++.+|..|+||||+ |+. .|+ .+++++|++.| ++++.+|..|+|
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~~~~d~~g~t 75 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHY-AAD-----CGQ-LEILEFLLLKG--ADINAPDKHHIT 75 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHH-HHH-----TTC-HHHHHHHHTTT--CCTTCCCTTSCC
T ss_pred ccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCcCCCCCCC
Confidence 47899999999999999998775 578999999999999999 999 999 99999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHH
Q 004089 216 ALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDT 262 (774)
Q Consensus 216 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~ 262 (774)
|||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..+..++
T Consensus 76 pL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 76 PLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHHHHHH
Confidence 99999999999999999999999 89999999999999954443333
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=203.33 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=124.7
Q ss_pred CCChHHHHHhccccccCCcHHHHHHHHHHccCcccccc------ccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcc
Q 004089 171 HKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALAR------QNRHGRTALHFCAAK---GNLKAIKVLMKYKPDLTN 241 (774)
Q Consensus 171 g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~------~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~l~~ 241 (774)
+.++||. |+. .|+ .+.++.|++.| ++++. .|..|.||||+|+.. |+.+++++|+++|++ ++
T Consensus 151 ~~~~L~~-A~~-----~g~-~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn 220 (301)
T 2b0o_E 151 EPQRLWT-AIC-----NRD-LLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LD 220 (301)
T ss_dssp CHHHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TT
T ss_pred hHHHHhh-hhh-----ccC-HHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CC
Confidence 4578999 999 999 99999999999 88887 688999999999997 899999999999999 89
Q ss_pred ccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHH
Q 004089 242 VRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKT 321 (774)
Q Consensus 242 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~ 321 (774)
.+|..|.||||+|+..|+.+++++|+++|++++ ..|.+|.||||+|+..|+.+++++|++.|++ .|.||||+
T Consensus 221 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~ 292 (301)
T 2b0o_E 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHV 292 (301)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHH
Confidence 999999999999999999999999999999999 5999999999999999999999999999865 58999999
Q ss_pred HHhCCC
Q 004089 322 LAKKPY 327 (774)
Q Consensus 322 A~~~~~ 327 (774)
|+..+.
T Consensus 293 A~~~g~ 298 (301)
T 2b0o_E 293 DYSWVI 298 (301)
T ss_dssp ------
T ss_pred HHhcCC
Confidence 998874
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=4.1e-20 Score=191.72 Aligned_cols=126 Identities=24% Similarity=0.376 Sum_probs=116.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCc------cccccCCCCChHHHHHhccccccC---CcHHHHHHHHHHccCccccc
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDA------LTDKIDGHKTIFHLIAMLLVDVES---DEGTCLVDNLASIVVPEALA 207 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~------~~~~~~~g~TpLh~~A~~~~~~~~---g~~~~~v~~Ll~~g~~~~~~ 207 (774)
..++|+.|+..|+.+.++.++.. +.+ ++..|..|.||||+ |+. . |+ .+++++|+++| ++++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~-A~~-----~~~~~~-~~~v~~Ll~~g--a~in 199 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHL-AVR-----SVDRTS-LHIVDFLVQNS--GNLD 199 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHH-HHH-----HCCTTT-HHHHHHHHHHC--SCTT
T ss_pred hhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchH-HHH-----hcccch-HHHHHHHHHCC--CCcc
Confidence 45899999999999999977755 556 45558889999999 999 8 89 99999999999 9999
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCC
Q 004089 208 RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGV 273 (774)
Q Consensus 208 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 273 (774)
.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999 8999999999999999999999999999998754
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=2.6e-21 Score=194.01 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=113.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCccccccCCCCChHHHHHhccccccCCcHHHHHHHHHHc-cCccccccccCCCC
Q 004089 136 GRYWPLYKMTQKNDWRGVEDFVGEHPDALTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASI-VVPEALARQNRHGR 214 (774)
Q Consensus 136 ~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~-g~~~~~~~~~~~g~ 214 (774)
.|.||||+||..|+.++++.|++ .+.+++.+|..|.||||+ |+. .|+ .++|++|++. | ++++.+|..|+
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~-A~~-----~~~-~~~v~~Ll~~~g--~~~~~~d~~g~ 141 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYW-ACH-----GGH-KDIVEMLFTQPN--IELNQQNKLGD 141 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHH-HHH-----TTC-HHHHHHHTTSTT--CCCCCCCTTSC
T ss_pred ccccccccccccCcHHHHHHHHh-CCCCccccCCCCCCHHHH-HHH-----cCC-HHHHHHHHcCCC--CCccccCCCCC
Confidence 47899999999999999998775 688999999999999999 999 999 9999999999 8 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCcc
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDI 275 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~ 275 (774)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.++++.|++.++...+
T Consensus 142 tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 142 TALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence 999999999999999999999999 899999999999999999999999999999887764
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.7e-19 Score=203.38 Aligned_cols=137 Identities=19% Similarity=0.175 Sum_probs=117.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCccccc------cCCCCChHHHHH---hccccccCCcHHHHHHHHHHccCccccc
Q 004089 137 RYWPLYKMTQKNDWRGVEDFVGEHPDALTDK------IDGHKTIFHLIA---MLLVDVESDEGTCLVDNLASIVVPEALA 207 (774)
Q Consensus 137 g~t~Lh~Aa~~g~~~~v~~lL~~~~~~~~~~------~~~g~TpLh~~A---~~~~~~~~g~~~~~v~~Ll~~g~~~~~~ 207 (774)
..+.||.|+..|+.+.++.||. .|.++|.+ |..|.||||+ | +. .|+ .++|++|+++| +++|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~~~~~~~~g~t~Lh~-A~~~a~-----~g~-~~~v~~Ll~~g--a~vn 201 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAPEELVLHL-AVKVAN-----QAS-LPLVDFIIQNG--GHLD 201 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBCCSSSCCSCBCHHHH-HHHTCC-----TTT-HHHHHHHHHHS--CCTT
T ss_pred cHHHHHHHHhccCHHHHHHHHh-hcccccCCCCCcccccccchHHHH-HHHhcc-----ccc-HHHHHHHHHcC--CCCC
Confidence 3478999999999999998775 57888877 8889999999 9 66 899 99999999999 9999
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHH
Q 004089 208 RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLAN 287 (774)
Q Consensus 208 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 287 (774)
.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++. +|+|.
T Consensus 202 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~-------~~~h~ 273 (497)
T 3lvq_E 202 AKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA-------FPLHV 273 (497)
T ss_dssp CCCSSSCCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----------------
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC-------Cccee
Confidence 9999999999999999999999999999999 899999999999999999999999999999988773 68887
Q ss_pred HHhh
Q 004089 288 LIHA 291 (774)
Q Consensus 288 A~~~ 291 (774)
+...
T Consensus 274 ~~~~ 277 (497)
T 3lvq_E 274 DYSW 277 (497)
T ss_dssp ----
T ss_pred eccc
Confidence 7654
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=9.2e-20 Score=195.69 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=68.3
Q ss_pred chHHHHHHHc-CCHHHHHHHHhhCCCcccccc--CCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCC
Q 004089 138 YWPLYKMTQK-NDWRGVEDFVGEHPDALTDKI--DGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGR 214 (774)
Q Consensus 138 ~t~Lh~Aa~~-g~~~~v~~lL~~~~~~~~~~~--~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~ 214 (774)
.|+||.|+.. |+.++++.|| ..|+++|..+ ..|.||||+ |+. .|+ .++|++|+++| ++++.+|..|+
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL-~~Gadvn~~~~~~~g~TpLh~-Aa~-----~g~-~~iv~~LL~~G--advn~~d~~G~ 269 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADAL-AHGADVNWVNGGQDNATPLIQ-ATA-----ANS-LLACEFLLQNG--ANVNQADSAGR 269 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHH-HTTCCTTCCCTTTTCCCHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTCCCTTSC
T ss_pred CcHHHHHHHccCCHHHHHHHH-HcCCCCCccccccCCCCHHHH-HHH-----CCC-HHHHHHHHHcC--CCCCCCCCCCC
Confidence 3555555555 5555555444 3345555555 445555555 555 555 55555555555 55555555555
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhc
Q 004089 215 TALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKET 270 (774)
Q Consensus 215 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 270 (774)
||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+
T Consensus 270 TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 270 GPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 555555555555555555555555 4555555555555555555555555555544
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.2e-19 Score=194.85 Aligned_cols=147 Identities=15% Similarity=0.098 Sum_probs=119.8
Q ss_pred CCCCChHHHHHhccccccC-CcHHHHHHHHHHccCcccccccc--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccccc
Q 004089 169 DGHKTIFHLIAMLLVDVES-DEGTCLVDNLASIVVPEALARQN--RHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDN 245 (774)
Q Consensus 169 ~~g~TpLh~~A~~~~~~~~-g~~~~~v~~Ll~~g~~~~~~~~~--~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~ 245 (774)
..+.||||. |+. . |+ .+++++|++.| ++++..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|.
T Consensus 197 ~~~~t~L~~-Aa~-----~~g~-~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~ 266 (368)
T 3jue_A 197 LHPGALLFR-ASG-----HPPS-LPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADS 266 (368)
T ss_dssp CCHHHHHHH-HTS-----SSCC-HHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CCCCcHHHH-HHH-----ccCC-HHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCC
Confidence 344789999 999 9 99 99999999999 9999988 8899999999999999999999999999 899999
Q ss_pred CCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCC--ccCCCCCCCHHHHHH
Q 004089 246 EGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIG--RDNIDSRRIVLKTLA 323 (774)
Q Consensus 246 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~--~~~d~~g~tpLh~A~ 323 (774)
.|.||||+|+..|+.+++++|+++|++++ ..|.+|.||||+|+..|+.+++++|++.+.... ...+..+.|+++++.
T Consensus 267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 267 AGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 99999999999999999999999999999 599999999999999999999999998764332 145567889988776
Q ss_pred hCC
Q 004089 324 KKP 326 (774)
Q Consensus 324 ~~~ 326 (774)
...
T Consensus 346 ~~~ 348 (368)
T 3jue_A 346 DFS 348 (368)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=1.7e-19 Score=153.79 Aligned_cols=91 Identities=31% Similarity=0.498 Sum_probs=68.4
Q ss_pred CCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcH
Q 004089 171 HKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLP 250 (774)
Q Consensus 171 g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp 250 (774)
|+||||+ |+. .|+ .+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||
T Consensus 2 g~t~L~~-A~~-----~~~-~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~ 71 (93)
T 1n0q_A 2 GRTPLHL-AAR-----NGH-LEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTP 71 (93)
T ss_dssp -CCHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred CCcHHHH-HHH-----cCC-HHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCH
Confidence 6677777 777 777 77777777777 77777777777777777777777777777777777 67777777777
Q ss_pred HHHHHHhCChHHHHHHHhhcC
Q 004089 251 VQLAALYGHKDTFQYLLKETH 271 (774)
Q Consensus 251 L~~A~~~g~~~~v~~Ll~~~~ 271 (774)
||+|+..|+.+++++|+++|+
T Consensus 72 l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 72 LHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 777777777777777777765
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=1.6e-19 Score=187.18 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=117.7
Q ss_pred CChHHHHHhccccccCCcHHHHHHHHHHccCccc------cccccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccc
Q 004089 172 KTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEA------LARQNRHGRTALHFCAAK---GNLKAIKVLMKYKPDLTNV 242 (774)
Q Consensus 172 ~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~------~~~~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~l~~~ 242 (774)
.++||. |+. .|+ .+.++.+++.| ++ ++..|..|.||||+|+.. |+.+++++|+++|++ ++.
T Consensus 131 l~~l~~-a~~-----~~d-~~~~~~ll~~g--~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~ 200 (278)
T 1dcq_A 131 LHSLCE-AVK-----TRD-IFGLLQAYADG--VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDK 200 (278)
T ss_dssp HHHHHH-HHH-----TTC-HHHHHHHHHTT--CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTC
T ss_pred hhhhhh-Hhh-----hcc-cHHHHHHHHhh--cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccc
Confidence 679999 999 999 99999999999 66 455688899999999999 899999999999999 899
Q ss_pred cccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCC
Q 004089 243 RDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTI 307 (774)
Q Consensus 243 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~ 307 (774)
+|..|.||||+|+..|+.+++++|+++|++++ ..|.+|.||||+|+..|+.+++++|++.|++.
T Consensus 201 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 201 QTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999 59999999999999999999999999998753
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=3.7e-19 Score=151.65 Aligned_cols=93 Identities=30% Similarity=0.458 Sum_probs=88.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhh
Q 004089 212 HGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHA 291 (774)
Q Consensus 212 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 291 (774)
+|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+.+|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHc
Confidence 489999999999999999999999999 89999999999999999999999999999999999 5999999999999999
Q ss_pred chHHHHHHHHhhCCC
Q 004089 292 RLYDVALDLLKLHPT 306 (774)
Q Consensus 292 ~~~~iv~~Ll~~~~~ 306 (774)
|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999874
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=2.6e-19 Score=201.88 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=118.2
Q ss_pred CChHHHHHhccccccCCcHHHHHHHHHHccCccccccc------cCCCCcHHHHHHH---cCCHHHHHHHHHcCCCCccc
Q 004089 172 KTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQ------NRHGRTALHFCAA---KGNLKAIKVLMKYKPDLTNV 242 (774)
Q Consensus 172 ~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~------~~~g~TpLh~A~~---~g~~~iv~~Ll~~~~~l~~~ 242 (774)
.+.||. |+. .|+ .++|+.|++.| ++++.+ |..|.||||+||+ .|+.+++++|+++|++ ++.
T Consensus 133 ~~~L~~-A~~-----~g~-~~~v~~ll~~g--~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~ 202 (497)
T 3lvq_E 133 PQRLWT-AIC-----NRD-LLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDA 202 (497)
T ss_dssp HHHHHH-HHH-----HTC-HHHHHHHHHTT--CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTC
T ss_pred HHHHHH-HHh-----ccC-HHHHHHHHhhc--ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCc
Confidence 467999 999 999 99999999999 888877 8899999999976 9999999999999999 899
Q ss_pred cccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 004089 243 RDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKLHPTIGRDNIDSRRIVLKTL 322 (774)
Q Consensus 243 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A 322 (774)
+|..|.||||+|+..|+.+++++|+++|++++ ..|.+|.||||+|+..|+.+++++|+++|++... +|+|.+
T Consensus 203 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~-------~~~h~~ 274 (497)
T 3lvq_E 203 KAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAGTFA-------FPLHVD 274 (497)
T ss_dssp CCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCS-CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----------------
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC-------Ccceee
Confidence 99999999999999999999999999999999 5999999999999999999999999999998762 688876
Q ss_pred HhC
Q 004089 323 AKK 325 (774)
Q Consensus 323 ~~~ 325 (774)
...
T Consensus 275 ~~~ 277 (497)
T 3lvq_E 275 YSW 277 (497)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=4.5e-19 Score=157.65 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=63.6
Q ss_pred ccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccC
Q 004089 167 KIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNE 246 (774)
Q Consensus 167 ~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~ 246 (774)
+|.+|.||||+ |+. .|+ .+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 5 ~d~~g~t~L~~-A~~-----~~~-~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~ 74 (115)
T 2l6b_A 5 GSKDGNTPLHN-AAK-----NGH-AEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKD 74 (115)
T ss_dssp CSCSSCCHHHH-HHH-----HTC-HHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTT
T ss_pred cCCCCCCHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCC
Confidence 34555666666 666 666 66666666666 55666666666666666666666666666666665 5556666
Q ss_pred CCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchH
Q 004089 247 GTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALV 284 (774)
Q Consensus 247 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 284 (774)
|.||||+|+..|+.+++++|+++|++++ ..+..|.+|
T Consensus 75 g~tpl~~A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~ 111 (115)
T 2l6b_A 75 GNTPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSSHH 111 (115)
T ss_dssp CCCTTHHHHTTTCHHHHHHHHTTSSSHH-HHSCCCC--
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCCC-cCCcccccc
Confidence 6666666666666666666666665555 355555554
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=6.4e-19 Score=156.62 Aligned_cols=109 Identities=22% Similarity=0.258 Sum_probs=101.7
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCchHHHH
Q 004089 208 RQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGALVLAN 287 (774)
Q Consensus 208 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 287 (774)
.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHH
Confidence 4788999999999999999999999999999 89999999999999999999999999999999998 589999999999
Q ss_pred HHhhchHHHHHHHHhhCCCCCccCCCCCCCHH
Q 004089 288 LIHARLYDVALDLLKLHPTIGRDNIDSRRIVL 319 (774)
Q Consensus 288 A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~tpL 319 (774)
|+..++.+++++|+++|++++ .++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVN-ARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHH-HHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCC-cCCccccccc
Confidence 999999999999999999998 7888898874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=1e-16 Score=141.11 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=60.1
Q ss_pred cccccCCCCChHHHHHhccccccCCcHHHHHHHHHHccCccccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 004089 164 LTDKIDGHKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVR 243 (774)
Q Consensus 164 ~~~~~~~g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~ 243 (774)
....|.+|.||||+ |+. .|+ .+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+
T Consensus 17 ~~~~~~~g~t~L~~-A~~-----~g~-~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~ 86 (110)
T 2zgd_A 17 GSHMGSDLGKKLLE-AAR-----AGQ-DDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQ 86 (110)
T ss_dssp -----CCHHHHHHH-HHH-----HTC-HHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC
T ss_pred ccccCCccchHHHH-HHH-----cCC-HHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccc
Confidence 34445566666666 666 666 66666666666 66666666666666666666666666666666666 5666
Q ss_pred ccCCCcHHHHHHHhCChHHHHHH
Q 004089 244 DNEGTLPVQLAALYGHKDTFQYL 266 (774)
Q Consensus 244 d~~g~tpL~~A~~~g~~~~v~~L 266 (774)
|..|.||||+|+..|+.+++++|
T Consensus 87 d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 87 DKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ccCCCcHHHHHHHcCCHHHHHHh
Confidence 66666666666666666666655
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=2.4e-16 Score=138.69 Aligned_cols=95 Identities=23% Similarity=0.250 Sum_probs=85.2
Q ss_pred cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCcHHHHHHHhCChHHHHHHHhhcCCCccccCCCCch
Q 004089 204 EALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPDLTNVRDNEGTLPVQLAALYGHKDTFQYLLKETHGVDIYSGNDGAL 283 (774)
Q Consensus 204 ~~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 283 (774)
......|.+|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.|
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t 92 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKT 92 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCc
Confidence 34556788999999999999999999999999999 89999999999999999999999999999999999 59999999
Q ss_pred HHHHHHhhchHHHHHHH
Q 004089 284 VLANLIHARLYDVALDL 300 (774)
Q Consensus 284 ~Lh~A~~~~~~~iv~~L 300 (774)
|||+|+..|+.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999986
No 115
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=44.05 E-value=1.4e+02 Score=27.67 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCC
Q 004089 601 SVVAALIITVVFAAAFTVPGG 621 (774)
Q Consensus 601 ~vva~Liatvtfaa~~t~Pgg 621 (774)
.+.++|++-.++-+.+.+|.+
T Consensus 24 alfaAliavla~i~~Ipip~~ 44 (198)
T 4dve_A 24 AFMTAFIIILGFLPGIPIGFI 44 (198)
T ss_dssp HHHHHHHHHHTTSCCBCCSSS
T ss_pred HHHHHHHHHHHHhccCCCCCC
Confidence 455666666666666777743
No 116
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.83 E-value=37 Score=34.79 Aligned_cols=21 Identities=0% Similarity=-0.132 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004089 683 VTLFFSIASMMVAFGATVHIS 703 (774)
Q Consensus 683 ~~l~~s~~~m~~af~~~~~~v 703 (774)
.+..+|+.++..+|++|+|=+
T Consensus 281 ~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 345578888899999999866
No 117
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=31.62 E-value=37 Score=35.24 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004089 683 VTLFFSIASMMVAFGATVHIS 703 (774)
Q Consensus 683 ~~l~~s~~~m~~af~~~~~~v 703 (774)
.+..+|+++|..+|++|+|=+
T Consensus 305 ~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 445578888999999999765
No 118
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=26.50 E-value=1.1e+02 Score=31.24 Aligned_cols=190 Identities=8% Similarity=-0.001 Sum_probs=85.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCc--cccccCCCCChHHHH
Q 004089 101 LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDA--LTDKIDGHKTIFHLI 178 (774)
Q Consensus 101 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~--~~~~~~~g~TpLh~~ 178 (774)
|......++.+..+.+++.+... -...-.+..|+..+......|+.+....++..-... --..+..|.-.+..
T Consensus 41 lQ~~l~~~~~~~~~~i~~ei~~~----~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk- 115 (351)
T 3gvo_A 41 IQQKLERATPAERQIVFNEILQA----AYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQK- 115 (351)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGG----HHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHH-
T ss_pred HHHHHhhCCHHHHHHHHHHHHHh----HHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHH-
Confidence 55556666766666666555422 122233445777788888888877766666431111 01122333333333
Q ss_pred HhccccccCCcHHHHHHHHHHccCcc-ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-C-ccccccCCCcHHHHHH
Q 004089 179 AMLLVDVESDEGTCLVDNLASIVVPE-ALARQNRHGRTALHFCAAKGNLKAIKVLMKYKPD-L-TNVRDNEGTLPVQLAA 255 (774)
Q Consensus 179 A~~~~~~~~g~~~~~v~~Ll~~g~~~-~~~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~-l-~~~~d~~g~tpL~~A~ 255 (774)
+.. ... .+-...+++.-.+. .--..|..|+..+......+..+..+.+++.-.. + .-..+..|...+.-+.
T Consensus 116 ~le-----~~~-~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~l 189 (351)
T 3gvo_A 116 ALE-----SIS-SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 189 (351)
T ss_dssp HHH-----HSC-HHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHH
T ss_pred HHH-----hCC-HHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHH
Confidence 333 222 22222222211000 0112455565555555554444433333332111 0 0122344444444444
Q ss_pred HhCChH----HHHHHHhhcCCCccccCCCCchHHHHHHhhchHHHHHHHHhh
Q 004089 256 LYGHKD----TFQYLLKETHGVDIYSGNDGALVLANLIHARLYDVALDLLKL 303 (774)
Q Consensus 256 ~~g~~~----~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~ 303 (774)
.....+ +++.|..+- ..+..|.+|+-.+..+...+..+..+.+++.
T Consensus 190 e~~~~~~~~~ii~~l~~~~--~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~ 239 (351)
T 3gvo_A 190 EHCTAEQTLPILEELHQHT--EQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 239 (351)
T ss_dssp HHSCHHHHHHHHHHHHTTH--HHHHTSTTHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHCCHHHHHHHHHHHhhhH--HhcCCCchHHHHHHHHHHhCchhhHHHHHHH
Confidence 443332 233332211 1115677777777777666665555555543
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=22.15 E-value=1.9e+02 Score=29.39 Aligned_cols=189 Identities=8% Similarity=0.006 Sum_probs=95.6
Q ss_pred ccchhHH-HHHHHHhCCHHHHHHHHHHHHhcccCccccccccCCCchHHHHHHHcCCHHHHHHHHhhCCCc--cccccCC
Q 004089 94 YYDLSWT-LCRMIEINDRQGAEDLVKEVKEAKSSEDAQRDEYYGRYWPLYKMTQKNDWRGVEDFVGEHPDA--LTDKIDG 170 (774)
Q Consensus 94 ~~~~~~t-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~lL~~~~~~--~~~~~~~ 170 (774)
.|.+|+- +.-....++.+....+++.+... -.....+..|...+..+......+-...++.+-... --..|..
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~----~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~ 144 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQN 144 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTC----HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTT
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhh----HHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhh
Confidence 4556666 55555677887777777655421 112223345777788887777776655555431100 0112233
Q ss_pred CCChHHHHHhccccccCCcHHHHHHHHHHccCcccc-ccccCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccccc
Q 004089 171 HKTIFHLIAMLLVDVESDEGTCLVDNLASIVVPEAL-ARQNRHGRTALHFCAAKGNLK----AIKVLMKYKPDLTNVRDN 245 (774)
Q Consensus 171 g~TpLh~~A~~~~~~~~g~~~~~v~~Ll~~g~~~~~-~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~~~~l~~~~d~ 245 (774)
|...+.. ... .+. .+..+.+++.-.+.-. -..+..|...+.-+......+ +++.|..+- . .-..|.
T Consensus 145 Gn~ViQk-~l~-----~~~-~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~-~-~L~~d~ 215 (351)
T 3gvo_A 145 GNHVVQK-CIE-----CVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHT-E-QLVQDQ 215 (351)
T ss_dssp HHHHHHH-HHH-----HSC-GGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTH-H-HHHTST
T ss_pred hhHHHHH-HHH-----hCC-HHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhH-H-hcCCCc
Confidence 3333333 332 222 2222222221100000 013445655555555544443 333333221 1 235678
Q ss_pred CCCcHHHHHHHhCChHHHHHHHhhcCCCc--cccCCCCchHHHHHHhhchHH
Q 004089 246 EGTLPVQLAALYGHKDTFQYLLKETHGVD--IYSGNDGALVLANLIHARLYD 295 (774)
Q Consensus 246 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~Lh~A~~~~~~~ 295 (774)
+|.-.+......+..+..+.+++.-.+-- +..++.|...+.-+...+..+
T Consensus 216 ~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~ 267 (351)
T 3gvo_A 216 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 267 (351)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred hHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHH
Confidence 88888888888888777677765521111 156777777777777666544
No 120
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=21.10 E-value=4.2e+02 Score=26.77 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004089 693 MVAFGATVHISLSHKWNLVFIPIALVGFVPVTLFALLQFPLLLDM 737 (774)
Q Consensus 693 ~~af~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (774)
+..|...+--.+|+.+.--++-+.+++|+.+++..++.+.++..+
T Consensus 256 ~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~v~~l 300 (347)
T 3rhw_A 256 MTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHI 300 (347)
T ss_dssp HHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666778876543445455555555555555554444433
Done!