Query 004091
Match_columns 774
No_of_seqs 185 out of 322
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 17:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 2.5E-36 5.5E-41 263.6 -1.1 78 149-226 1-78 (79)
2 PF01833 TIG: IPT/TIG domain; 84.1 4.7 0.0001 34.0 7.2 72 548-634 1-73 (85)
3 cd00603 IPT_PCSR IPT domain of 82.2 7 0.00015 34.2 7.7 40 548-587 1-40 (90)
4 cd00102 IPT Immunoglobulin-lik 79.3 10 0.00022 32.5 7.6 39 548-587 1-40 (89)
5 cd01179 IPT_plexin_repeat2 Sec 73.9 15 0.00033 32.4 7.3 39 548-587 1-39 (85)
6 cd01180 IPT_plexin_repeat1 Fir 71.1 7 0.00015 35.4 4.6 40 548-587 1-42 (94)
7 smart00429 IPT ig-like, plexin 64.2 11 0.00024 32.9 4.3 38 548-586 2-39 (90)
8 PF09099 Qn_am_d_aIII: Quinohe 62.2 11 0.00024 34.2 4.1 26 548-573 2-27 (81)
9 PF10866 DUF2704: Protein of u 61.1 7.2 0.00016 39.4 2.9 30 452-481 123-159 (168)
10 cd02849 CGTase_C_term Cgtase ( 46.3 1.2E+02 0.0026 27.2 7.9 76 547-642 2-79 (81)
11 cd01181 IPT_plexin_repeat3 Thi 44.4 41 0.00088 31.1 4.8 41 548-588 1-42 (99)
12 PF14901 Jiv90: Cleavage induc 31.7 21 0.00045 33.5 0.8 18 187-204 26-43 (94)
13 cd00604 IPT_CGTD IPT domain (d 29.2 2.9E+02 0.0064 24.8 7.6 77 548-644 1-79 (81)
14 PF05587 Anth_Ig: Anthrax rece 29.1 18 0.0004 34.4 0.0 37 549-585 7-45 (105)
15 PRK00241 nudC NADH pyrophospha 26.4 23 0.00051 37.9 0.2 37 161-198 91-127 (256)
16 cd02969 PRX_like1 Peroxiredoxi 22.0 1.4E+02 0.0031 29.0 4.7 46 431-478 116-169 (171)
17 cd01175 IPT_COE IPT domain of 20.6 3E+02 0.0065 25.7 6.0 39 548-589 1-39 (85)
18 PF12362 DUF3646: DNA polymera 20.3 86 0.0019 30.3 2.7 30 433-462 35-64 (117)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=2.5e-36 Score=263.61 Aligned_cols=78 Identities=65% Similarity=1.133 Sum_probs=63.2
Q ss_pred ceeccCCcchhccCchhhcccccchhccCcceeeeCCchhhhhhhhccCccCccccCCcchHHHHHhhhhhhcccCCC
Q 004091 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226 (774)
Q Consensus 149 ~CqV~gC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFd~~krSCr~~L~~hn~RRRk~~~ 226 (774)
+||||||++||+.+|.||+||||||.|+||++|+++|..+||||||+|||+|+|||++|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=84.13 E-value=4.7 Score=33.98 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=51.6
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceeeeecccccccCcccccccccceEEeeccCCCCCC-Cce
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVT-GRG 626 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~~e~~~~~~~g~~~~~~~dei~~l~~~~~~P~~~-Gr~ 626 (774)
|.|..|.|-.-.......+.|.|.||......+.|.+.+..-...... .+.. +.|..|... |..
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~~~~~~~----------~~~~-----i~c~~p~~~~~~~ 65 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQCTVITVV----------SSTQ-----ITCTSPALPSGNV 65 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEEEEEGEE----------ETTE-----EEEE--SCSSEEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEeeeEEEEE----------CCcE-----EEEEECCCCCccE
Confidence 789999999888888999999999998888999999999877654210 1232 335566554 444
Q ss_pred EEEEecCC
Q 004091 627 FIEIEDHG 634 (774)
Q Consensus 627 FIEVE~~G 634 (774)
-|.|..+|
T Consensus 66 ~v~v~~~~ 73 (85)
T PF01833_consen 66 NVSVTVNG 73 (85)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 47776655
No 3
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=82.23 E-value=7 Score=34.17 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=35.5
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCc
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGK 587 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~Gk 587 (774)
|+|..++|..-.....+.+.++|.||.....++-|.+.|.
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~ 40 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGV 40 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEEEECCE
Confidence 7899999999999999999999999999877788888654
No 4
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=79.31 E-value=10 Score=32.48 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=33.2
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEE-cCc
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAV-EGK 587 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~-~Gk 587 (774)
|+|..+.|..-.....+.+.++|.||.... ++-|.| .+.
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~-~~~v~~~g~~ 40 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSGS-NLRVTFGGGV 40 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCCC-cEEEEEeCCC
Confidence 689999999999988999999999998754 778888 443
No 5
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=73.87 E-value=15 Score=32.39 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=34.3
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCc
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGK 587 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~Gk 587 (774)
|.|.++.|..-+....+.+.++|.||... .++.|.+.|.
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~-~~~~V~ig~~ 39 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAG-SSVRVTVGGQ 39 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCC-CeEEEEECCe
Confidence 78999999999999999999999999764 5588888885
No 6
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=71.15 E-value=7 Score=35.36 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=34.6
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCC--ceEEEEEcCc
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSA--TRLLCAVEGK 587 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~--tRlLcs~~Gk 587 (774)
|+|..|+|.--+....+.+.++|.||.... .++.+.+.|.
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~ 42 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGV 42 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCE
Confidence 689999999999999999999999999875 5666777664
No 7
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=64.17 E-value=11 Score=32.88 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=32.4
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcC
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEG 586 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~G 586 (774)
|+|..+.|..-.....+.+.++|.||.. .+.+.+.+..
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~-~~~~~~~~~~ 39 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDS-ISVVFVEVGV 39 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCc-ceEEEEEEEe
Confidence 7999999999988777799999999986 7777777754
No 8
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=62.17 E-value=11 Score=34.16 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=24.5
Q ss_pred ceeeEeeeeeEecCCceEEEEEeecc
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINL 573 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL 573 (774)
|+|..|+|-.+.+|.++++.+-|.||
T Consensus 2 p~i~aV~P~~lkaG~~t~vti~Gt~L 27 (81)
T PF09099_consen 2 PTILAVSPAGLKAGEETTVTIVGTGL 27 (81)
T ss_dssp SEEEEEESSEEETTCEEEEEEEEES-
T ss_pred CeEEEECchhccCCCeEEEEEEecCc
Confidence 79999999999999999999999999
No 9
>PF10866 DUF2704: Protein of unknown function (DUF2704); InterPro: IPR022594 This group of viral proteins has no known function.
Probab=61.05 E-value=7.2 Score=39.45 Aligned_cols=30 Identities=30% Similarity=0.709 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCCC-------CCcccccCCCeeEee
Q 004091 452 VLRAQILDWLSHSPS-------DMESYIRPGCVILTI 481 (774)
Q Consensus 452 ~LR~QI~~WLs~sP~-------elEgYIRPGCviLTv 481 (774)
.++++|++-|.+.=. .--|||.|.|||+|.
T Consensus 123 T~kn~vLnVlnn~L~d~~~~~d~~~~yikpnciv~tf 159 (168)
T PF10866_consen 123 TFKNAVLNVLNNELSDEANEYDTSAGYIKPNCIVLTF 159 (168)
T ss_pred HHHHHHHHHHhhhccccccccccccCccCCCeEEEee
Confidence 688999999987443 345999999999995
No 10
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=46.26 E-value=1.2e+02 Score=27.22 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=45.9
Q ss_pred CceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceeeeecccccccCcccccccccceEEeeccCCCCC-CCc
Q 004091 547 YSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAV-TGR 625 (774)
Q Consensus 547 ~p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~~e~~~~~~~g~~~~~~~dei~~l~~~~~~P~~-~Gr 625 (774)
.|.|..|.|.....|. ++.+.|.++.....+ +.|.+... .+.. .. ...| .+.+|.. .|-
T Consensus 2 ~P~I~~i~P~~g~~G~--~VtI~G~gFg~~~~~--V~~g~~~a--~v~s--~s-------dt~I-----~~~vP~~~aG~ 61 (81)
T cd02849 2 TPLIGHVGPMMGKAGN--TVTISGEGFGSAPGT--VYFGTTAA--TVIS--WS-------DTRI-----VVTVPNVPAGN 61 (81)
T ss_pred CCEEeeEcCCCCCCCC--EEEEEEECCCCCCcE--EEECCEEe--EEEE--EC-------CCEE-----EEEeCCCCCce
Confidence 4799999999888766 567888888754444 46665433 2221 11 2223 3457776 666
Q ss_pred eEEEEecC-CCCCCCeee
Q 004091 626 GFIEIEDH-GFSSTFFPF 642 (774)
Q Consensus 626 ~FIEVE~~-Glss~~fPv 642 (774)
..|=|... |-.|+.+.|
T Consensus 62 ~~V~V~~~~G~~Sn~~~f 79 (81)
T cd02849 62 YDVTVKTADGATSNGYNF 79 (81)
T ss_pred EEEEEEeCCCcccCcEee
Confidence 65555543 655566654
No 11
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=44.44 E-value=41 Score=31.05 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=35.2
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCC-ceEEEEEcCce
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSA-TRLLCAVEGKY 588 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~-tRlLcs~~GkY 588 (774)
|.|..|+|..=..+..+.+.|.|.||+.=. -++-+.+++.+
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q~p~~~V~~~~~~ 42 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVE 42 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCcccccEEEEEECCce
Confidence 689999999988899999999999999844 37777888854
No 12
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=31.68 E-value=21 Score=33.49 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=14.6
Q ss_pred hhhhhhhhccCccCcccc
Q 004091 187 MQRFCQQCSRFHVLQEFD 204 (774)
Q Consensus 187 ~~RFCQQC~rFH~L~eFd 204 (774)
.-|+||+|+.+|+-.+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 469999999999876544
No 13
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=29.18 E-value=2.9e+02 Score=24.78 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=46.8
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceeeeecccccccCcccccccccceEEeeccCCCCC-CCce
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAV-TGRG 626 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~~e~~~~~~~g~~~~~~~dei~~l~~~~~~P~~-~Gr~ 626 (774)
|.|..|.|....+|..+ .+.|.++.....++ .|+|.-. ++.. . ....|. +.+|.. .|..
T Consensus 1 P~I~~i~P~~g~pG~~V--tI~G~gFg~~~~~V--~~g~~~a--~v~s--~-------sdt~I~-----~~VP~~~~g~~ 60 (81)
T cd00604 1 PLIGSVGPVMGKPGNTV--TISGEGFGSTGGTV--YFGGTAA--EVLS--W-------SDTSIV-----VEVPRVAPGNY 60 (81)
T ss_pred CeEeeEcCCCCCCCCEE--EEEEECCCCCccEE--EECCEEE--EEEE--E-------CCCEEE-----EEeCCCCCCce
Confidence 68999999988887765 67777777644444 5666332 2222 0 123333 447765 4544
Q ss_pred EEEEec-CCCCCCCeeeee
Q 004091 627 FIEIED-HGFSSTFFPFIV 644 (774)
Q Consensus 627 FIEVE~-~Glss~~fPvIV 644 (774)
.|-|.. +|-.|+.++|=+
T Consensus 61 ~i~V~~~~G~~Sn~~~f~~ 79 (81)
T cd00604 61 NISVTTVDGVTSNGYNFEV 79 (81)
T ss_pred EEEEEECCCcccCcEeEEE
Confidence 677765 577777877644
No 14
>PF05587 Anth_Ig: Anthrax receptor extracellular domain; InterPro: IPR008400 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to IPR002909 from INTERPRO.; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3N2N_E 1SHT_X 1TZN_o 1SHU_X.
Probab=29.15 E-value=18 Score=34.44 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=0.0
Q ss_pred eeeEeeeeeEecCCceEEEEEee--ccCCCCceEEEEEc
Q 004091 549 KILSVKPIAVPASERAQFFVKGI--NLGRSATRLLCAVE 585 (774)
Q Consensus 549 ~I~~V~PlAv~ag~~~~f~v~G~--NL~~p~tRlLcs~~ 585 (774)
+|+.|.|--|=+|++-+++|+|+ +++.....++|+|.
T Consensus 7 Eil~~ePSsvC~ge~f~Vvv~G~GF~~~~~~d~ViC~F~ 45 (105)
T PF05587_consen 7 EILSVEPSSVCVGESFQVVVRGNGFNNARNVDQVICRFK 45 (105)
T ss_dssp ---------------------------------------
T ss_pred eEEEEcCCceECCCceEEEEECccccccCCCCeEEEEEE
Confidence 79999999999999999999976 55556778999984
No 15
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=26.37 E-value=23 Score=37.90 Aligned_cols=37 Identities=14% Similarity=0.373 Sum_probs=28.7
Q ss_pred cCchhhcccccchhccCcceeeeCCchhhhhhhhccCc
Q 004091 161 NAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFH 198 (774)
Q Consensus 161 ~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH 198 (774)
.+-.+|++||-|..+-....+. .+...|.|..|+..|
T Consensus 91 ~l~~w~~~~~fC~~CG~~~~~~-~~~~~~~C~~c~~~~ 127 (256)
T PRK00241 91 QLAEFYRSHRFCGYCGHPMHPS-KTEWAMLCPHCRERY 127 (256)
T ss_pred HHHHHhhcCccccccCCCCeec-CCceeEECCCCCCEE
Confidence 3457999999999988876654 455678999999765
No 16
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=22.01 E-value=1.4e+02 Score=28.97 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=34.7
Q ss_pred ccccceeEEEecCCCCCC--------chHHHHHHHHHHhccCCCCCcccccCCCee
Q 004091 431 QSRTDRIVFKLFGKEPND--------FPLVLRAQILDWLSHSPSDMESYIRPGCVI 478 (774)
Q Consensus 431 q~rT~RIsFKLF~k~P~d--------fP~~LR~QI~~WLs~sP~elEgYIRPGCvi 478 (774)
-++.|||.+. +..+.. =...|++.|-.||+..+.+.|--+=+||.+
T Consensus 116 id~~G~v~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 169 (171)
T cd02969 116 FDPDGKLVYR--GRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSI 169 (171)
T ss_pred ECCCCeEEEe--ecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCccc
Confidence 3667888864 211111 135799999999999999999999999975
No 17
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=20.55 E-value=3e+02 Score=25.65 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=33.3
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCcee
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYM 589 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL 589 (774)
|.|+.+.|-.=.....+++++-|-|+.+- |.|-|++-+.
T Consensus 1 P~I~ai~P~eG~~tGGt~VtI~GenF~~g---l~V~FG~~~~ 39 (85)
T cd01175 1 PCIKAISPSEGWTTGGATVIIIGDNFFDG---LQVVFGTMLV 39 (85)
T ss_pred CcccEecCCCCcccCCeEEEEECCCCCCC---cEEEECCEeE
Confidence 57888888877777788999999999887 8899998873
No 18
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=20.27 E-value=86 Score=30.28 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=27.9
Q ss_pred ccceeEEEecCCCCCCchHHHHHHHHHHhc
Q 004091 433 RTDRIVFKLFGKEPNDFPLVLRAQILDWLS 462 (774)
Q Consensus 433 rT~RIsFKLF~k~P~dfP~~LR~QI~~WLs 462 (774)
.-|||.|.+-..-|.+|+++|..-+.+|-.
T Consensus 35 ~pGrie~~~~~~ap~dl~~~L~~~L~~wTG 64 (117)
T PF12362_consen 35 EPGRIEFRPTPGAPKDLAQRLSRKLQEWTG 64 (117)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999965
Done!