Query 004091
Match_columns 774
No_of_seqs 185 out of 322
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 8.8E-40 3E-44 291.4 -0.1 90 142-231 3-92 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 1.5E-38 5.2E-43 280.7 -0.7 83 146-228 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 99.9 1.7E-29 5.8E-34 209.2 1.4 59 146-204 2-60 (60)
4 1uad_C RSEC5, exocyst complex 65.1 14 0.00048 32.7 6.7 39 547-587 7-46 (99)
5 2cxk_A Camta1, calmodulin bind 52.8 40 0.0014 29.8 7.4 47 546-593 5-51 (95)
6 4hw6_A Hypothetical protein, I 48.3 37 0.0013 36.6 7.7 44 545-590 16-60 (433)
7 3hrp_A Uncharacterized protein 35.9 85 0.0029 33.1 8.1 40 545-586 14-54 (409)
8 3tc9_A Hypothetical hydrolase; 34.1 90 0.0031 33.4 8.0 67 548-632 18-86 (430)
9 1pby_A Quinohemoprotein amine 21.5 81 0.0028 35.7 4.8 31 545-575 273-303 (489)
10 2dmb_A Filamin-B; beta-sandwic 21.0 3.5E+02 0.012 24.5 8.3 88 545-648 11-105 (124)
11 1k1a_A B-cell lymphoma 3-encod 20.1 53 0.0018 30.5 2.7 25 719-743 12-36 (241)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=8.8e-40 Score=291.44 Aligned_cols=90 Identities=63% Similarity=1.075 Sum_probs=80.5
Q ss_pred CCCCCCCceeccCCcchhccCchhhcccccchhccCcceeeeCCchhhhhhhhccCccCccccCCcchHHHHHhhhhhhc
Q 004091 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRR 221 (774)
Q Consensus 142 ~~~~~~~~CqV~gC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFd~~krSCr~~L~~hn~RR 221 (774)
+++++.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCC
Q 004091 222 RKTNPDAVAN 231 (774)
Q Consensus 222 Rk~~~~~~~~ 231 (774)
||+++++...
T Consensus 83 Rk~~~~~~~~ 92 (94)
T 1ul4_A 83 RKSSGESGPS 92 (94)
T ss_dssp CSCCCC----
T ss_pred ccCCCCcCCC
Confidence 9999997643
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.5e-38 Score=280.69 Aligned_cols=83 Identities=52% Similarity=0.962 Sum_probs=79.4
Q ss_pred CCCceeccCCcchhccCchhhcccccchhccCcceeeeCCchhhhhhhhccCccCccccCCcchHHHHHhhhhhhcccCC
Q 004091 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN 225 (774)
Q Consensus 146 ~~~~CqV~gC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFd~~krSCr~~L~~hn~RRRk~~ 225 (774)
+.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 004091 226 PDA 228 (774)
Q Consensus 226 ~~~ 228 (774)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.95 E-value=1.7e-29 Score=209.25 Aligned_cols=59 Identities=78% Similarity=1.372 Sum_probs=57.2
Q ss_pred CCCceeccCCcchhccCchhhcccccchhccCcceeeeCCchhhhhhhhccCccCcccc
Q 004091 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (774)
Q Consensus 146 ~~~~CqV~gC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFd 204 (774)
+.++|||+||++||+.+|+|||||||||.|+||++|+++|.++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=65.13 E-value=14 Score=32.72 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=32.9
Q ss_pred CceeeEeeeeeEecCCceEEEEEeeccCCCCceE-EEEEcCc
Q 004091 547 YSKILSVKPIAVPASERAQFFVKGINLGRSATRL-LCAVEGK 587 (774)
Q Consensus 547 ~p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRl-Lcs~~Gk 587 (774)
.|+|..++|..-+-| +.+.++|.||......+ .+.+.|.
T Consensus 7 ~P~It~i~P~~Gp~G--T~vTI~G~nlg~~~sdv~~V~vgg~ 46 (99)
T 1uad_C 7 PPLVTGISPNEGIPW--TKVTIRGENLGTGPTDLIGLTICGH 46 (99)
T ss_dssp CCEEEEEESSEESTT--CEEEEEEECSCSSGGGEEEEEETTE
T ss_pred CCEEEEEECCCcCCC--CEEEEEEEeCCCCcccceEEEECCE
Confidence 579999999988665 99999999998886666 5888884
No 5
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=52.81 E-value=40 Score=29.84 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=38.7
Q ss_pred CCceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceeeeec
Q 004091 546 NYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEA 593 (774)
Q Consensus 546 ~~p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~~e~ 593 (774)
..-.|..++|-+-..+..+.+.|.|.+|... .++.|.|.+.-..+|.
T Consensus 5 ~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~g-s~~~~~fG~~~vpa~~ 51 (95)
T 2cxk_A 5 SSGMVTDYSPEWSYPEGGVKVLITGPWQEAS-NNYSCLFDQISVPASL 51 (95)
T ss_dssp CCSCCCEEECSEECTTCCCEEEEESSCCCCS-SCEEEEETTEEEECEE
T ss_pred CcEEEEEECCCcccCCCCEEEEEEeECCCCC-ccEEEEECCEEEeEEE
Confidence 3447999999999999999999999999754 5899999886554543
No 6
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=48.34 E-value=37 Score=36.58 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCCc-eeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceee
Q 004091 545 NNYS-KILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMV 590 (774)
Q Consensus 545 ~~~p-~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~ 590 (774)
|+.| +|..+.|.. ++..+++++.|.|+......+.|.|.|+-..
T Consensus 16 ~~~p~~i~~~~P~~--g~~~~~~~i~G~nfg~~~~~~~v~~~~~~a~ 60 (433)
T 4hw6_A 16 PKEEIVVEKFLPTE--GRKGTRVVVYGRNFGNDVSKVKVTIGGYPAK 60 (433)
T ss_dssp TTSCCEEEEEESSE--ECTTCEEEEEEECCCSCGGGEEEEETTEEEE
T ss_pred CCCCCEEEEECCCC--CCCCCEEEEEeECCCCCcceeEEEECCEEEE
Confidence 4455 999999998 4567789999999998888999999995544
No 7
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.87 E-value=85 Score=33.13 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=34.6
Q ss_pred CCCc-eeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcC
Q 004091 545 NNYS-KILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEG 586 (774)
Q Consensus 545 ~~~p-~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~G 586 (774)
++.| +|..+.|.. ++..+++++.|.|+......+.|.|.|
T Consensus 14 ~~~~~~~~~~~p~~--g~~~~~~~i~g~nfg~~~~~~~v~~~~ 54 (409)
T 3hrp_A 14 PNQPVTVESFMPVE--GKLREKVIVKGSNFGTDKSKVKVYFVD 54 (409)
T ss_dssp TTSCCEEEEEECSE--ECTTCEEEEEEECCCSCGGGEEEEEEC
T ss_pred CCCCcEEEEEcCCC--CCCCcEEEEEeEcCCCCccceEEEECC
Confidence 3444 999999996 456789999999999998999999999
No 8
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=34.12 E-value=90 Score=33.39 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=47.1
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceeeeecccccccCcccccccccceEEeeccCCCCCCCce-
Q 004091 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRG- 626 (774)
Q Consensus 548 p~I~~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~~e~~~~~~~g~~~~~~~dei~~l~~~~~~P~~~Gr~- 626 (774)
|.|..+.|..-. ..+++++.|.|+......+-|.+.|+-... .. .. ...|. |.+|...|.+
T Consensus 18 ~~i~~~~P~~g~--~~~~~~i~G~nfg~~~~~~~v~~~~~~~~v--~~--~~-------~~~i~-----~~vp~~~~~g~ 79 (430)
T 3tc9_A 18 VVISEFSPKEGG--LGTRMLLYGENFGSDISKIKVTIGGQDSKV--VG--AK-------GKSLY-----CVVPAKAYDGD 79 (430)
T ss_dssp CEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEETTEEECE--EE--EC-------SSEEE-----EECCTTCTTCC
T ss_pred CEEEEEcCCCCC--CCCEEEEEEEcCCCCccceEEEECCEEEEE--EE--EC-------CCEEE-----EEeCCCCCCcc
Confidence 499999999875 567899999999988789999999954332 11 11 23444 4588777644
Q ss_pred -EEEEec
Q 004091 627 -FIEIED 632 (774)
Q Consensus 627 -FIEVE~ 632 (774)
-|.|+.
T Consensus 80 ~~v~~~~ 86 (430)
T 3tc9_A 80 IKLSILN 86 (430)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 455565
No 9
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=21.47 E-value=81 Score=35.70 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=29.0
Q ss_pred CCCceeeEeeeeeEecCCceEEEEEeeccCC
Q 004091 545 NNYSKILSVKPIAVPASERAQFFVKGINLGR 575 (774)
Q Consensus 545 ~~~p~I~~V~PlAv~ag~~~~f~v~G~NL~~ 575 (774)
...|+|..|.|-++.+|.+++++|-|.||..
T Consensus 273 ~~~~~~~av~P~~l~aG~~~~~~i~G~gL~g 303 (489)
T 1pby_A 273 DAAPQVLAVAPARLKIGEETQLRVAGTGLGS 303 (489)
T ss_dssp TCSSEEEEEESCEEETTCCEEEEEEEESCCS
T ss_pred CCCceEEEeChhhhcCCCceEEEEEeccccc
Confidence 5578999999999999999999999999996
No 10
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=20.95 E-value=3.5e+02 Score=24.48 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=52.0
Q ss_pred CCCceee--EeeeeeEecCCceEEEEEeeccCCCCceEEEEEc---CceeeeecccccccCcccccccccceEEeeccCC
Q 004091 545 NNYSKIL--SVKPIAVPASERAQFFVKGINLGRSATRLLCAVE---GKYMVQEATHELLDDVDGFKELDELQCVNFSCSI 619 (774)
Q Consensus 545 ~~~p~I~--~V~PlAv~ag~~~~f~v~G~NL~~p~tRlLcs~~---GkYL~~e~~~~~~~g~~~~~~~dei~~l~~~~~~ 619 (774)
+..+++. -+.+ ++.+|+++.|.|.-++-... .|-|... |..+..++. + ..|..+.+.|.
T Consensus 11 ask~~v~G~GL~~-~v~vg~~~~F~V~a~daG~~--~l~V~I~~p~g~~v~~~v~----d------~~dGty~V~Y~--- 74 (124)
T 2dmb_A 11 ASKCLATGPGIAS-TVKTGEEVGFVVDAKTAGKG--KVTCTVLTPDGTEAEADVI----E------NEDGTYDIFYT--- 74 (124)
T ss_dssp STTCEEESGGGSS-EEESSSEEEEEEECSSSCSC--CEEEEEECTTSCBCCCEEE----E------CTTSCEEEEEE---
T ss_pred ccceEEECCCccC-ccccCCcEEEEEEEecCCCC--cEEEEEECCCCCEEeeEEE----e------CCCCEEEEEEE---
Confidence 3344443 2444 45689999999998874332 3333332 222222211 1 13455677774
Q ss_pred CCCCCceEEEEecCC--CCCCCeeeeecchh
Q 004091 620 PAVTGRGFIEIEDHG--FSSTFFPFIVAEED 648 (774)
Q Consensus 620 P~~~Gr~FIEVE~~G--lss~~fPvIVa~~~ 648 (774)
|...|...|+|.=+| +.++.|.|-|.+.+
T Consensus 75 p~~~G~y~I~V~~~g~~I~gSPF~v~v~~~~ 105 (124)
T 2dmb_A 75 AAKPGTYVIYVRFGGVDIPNSPFTVMATDGE 105 (124)
T ss_dssp CSSCEEEEEEEEESSCBCTTCSEEEEEECCS
T ss_pred cCCCEEEEEEEEECCEECCCCCeEEEEEcCC
Confidence 445599999998655 77888888887643
No 11
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.10 E-value=53 Score=30.51 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=19.0
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcc
Q 004091 719 LIEFSMDHEWCAVVKKLLHILLDGT 743 (774)
Q Consensus 719 LL~FsverdwcAVvkkLL~~l~~g~ 743 (774)
.|-+|+.++-..+++.||..+....
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5777888888888888888766543
Done!