Query 004092
Match_columns 774
No_of_seqs 416 out of 1773
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 17:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 1.2E-35 2.6E-40 329.2 37.6 358 144-529 1-374 (374)
2 TIGR03449 mycothiol_MshA UDP-N 100.0 2E-34 4.3E-39 323.1 35.4 352 156-530 19-404 (405)
3 cd04962 GT1_like_5 This family 100.0 3E-34 6.5E-39 316.1 32.4 350 145-528 1-371 (371)
4 PLN02871 UDP-sulfoquinovose:DA 100.0 8.6E-34 1.9E-38 324.7 37.1 353 142-531 56-438 (465)
5 PRK15179 Vi polysaccharide bio 100.0 1.1E-33 2.3E-38 332.6 37.8 355 141-526 277-692 (694)
6 TIGR02472 sucr_P_syn_N sucrose 100.0 9.5E-34 2.1E-38 322.0 35.8 353 153-526 22-439 (439)
7 cd03796 GT1_PIG-A_like This fa 100.0 1.5E-33 3.3E-38 316.0 36.4 346 146-531 1-371 (398)
8 PRK10307 putative glycosyl tra 100.0 3.8E-33 8.3E-38 314.0 36.8 363 145-531 1-411 (412)
9 PRK15427 colanic acid biosynth 100.0 3.4E-33 7.3E-38 314.3 35.2 343 145-527 1-405 (406)
10 cd03819 GT1_WavL_like This fam 100.0 7.3E-33 1.6E-37 302.6 35.1 334 149-517 2-355 (355)
11 cd03792 GT1_Trehalose_phosphor 100.0 8.9E-33 1.9E-37 306.7 36.2 347 146-528 1-372 (372)
12 cd03807 GT1_WbnK_like This fam 100.0 1.4E-32 3.1E-37 297.0 35.8 350 146-526 1-365 (365)
13 TIGR02149 glgA_Coryne glycogen 100.0 1.3E-32 2.8E-37 305.8 35.5 355 145-529 1-388 (388)
14 cd04951 GT1_WbdM_like This fam 100.0 1.4E-32 3E-37 300.4 34.0 344 146-526 1-359 (360)
15 cd03805 GT1_ALG2_like This fam 100.0 2.2E-32 4.8E-37 304.4 34.4 351 145-521 1-392 (392)
16 PRK00654 glgA glycogen synthas 100.0 2.2E-32 4.7E-37 313.1 34.3 359 145-530 1-465 (466)
17 TIGR02468 sucrsPsyn_pln sucros 100.0 4.2E-32 9.1E-37 324.2 37.4 367 141-531 166-674 (1050)
18 PRK15484 lipopolysaccharide 1, 100.0 5.5E-32 1.2E-36 301.9 35.6 329 153-529 17-379 (380)
19 PLN02939 transferase, transfer 100.0 2.1E-31 4.5E-36 313.9 38.0 366 142-531 479-970 (977)
20 PLN02316 synthase/transferase 100.0 1.6E-31 3.5E-36 320.1 36.0 353 142-530 585-1036(1036)
21 cd03821 GT1_Bme6_like This fam 100.0 2.2E-31 4.7E-36 289.0 32.4 351 146-522 1-374 (375)
22 TIGR02095 glgA glycogen/starch 100.0 2.4E-31 5.2E-36 305.1 33.5 357 145-528 1-473 (473)
23 cd03812 GT1_CapH_like This fam 100.0 3E-31 6.4E-36 290.3 32.7 333 146-509 1-346 (358)
24 TIGR02470 sucr_synth sucrose s 100.0 7.8E-31 1.7E-35 308.2 37.5 362 144-525 255-745 (784)
25 PRK14099 glycogen synthase; Pr 100.0 7.1E-31 1.5E-35 301.1 35.2 362 143-530 2-481 (485)
26 PRK15490 Vi polysaccharide bio 100.0 6.5E-31 1.4E-35 296.7 34.1 344 146-527 163-575 (578)
27 cd03800 GT1_Sucrose_synthase T 100.0 4.5E-31 9.7E-36 293.1 32.4 347 154-522 18-397 (398)
28 cd03820 GT1_amsD_like This fam 100.0 1.7E-30 3.7E-35 278.5 35.3 332 146-522 1-347 (348)
29 cd03818 GT1_ExpC_like This fam 100.0 1.1E-30 2.4E-35 292.7 33.8 344 146-522 1-395 (396)
30 cd03814 GT1_like_2 This family 100.0 2.8E-30 6.1E-35 280.7 34.1 347 146-526 1-364 (364)
31 cd05844 GT1_like_7 Glycosyltra 100.0 1.8E-30 4E-35 285.6 32.0 338 147-523 2-366 (367)
32 cd03825 GT1_wcfI_like This fam 100.0 2.1E-30 4.6E-35 283.6 32.1 332 145-528 1-365 (365)
33 cd03808 GT1_cap1E_like This fa 100.0 9.8E-30 2.1E-34 273.8 35.8 339 146-522 1-358 (359)
34 cd03822 GT1_ecORF704_like This 100.0 5.1E-30 1.1E-34 279.3 33.2 350 146-526 1-366 (366)
35 PRK10125 putative glycosyl tra 100.0 1.5E-30 3.2E-35 292.5 29.4 337 145-528 1-405 (405)
36 cd03791 GT1_Glycogen_synthase_ 100.0 4.3E-30 9.2E-35 294.7 33.4 357 146-526 1-475 (476)
37 cd03813 GT1_like_3 This family 100.0 1.8E-30 3.9E-35 298.0 29.1 284 214-526 172-475 (475)
38 cd03817 GT1_UGDG_like This fam 100.0 2.1E-29 4.5E-34 273.7 35.6 352 146-527 1-373 (374)
39 PRK09922 UDP-D-galactose:(gluc 100.0 5.6E-30 1.2E-34 283.3 31.2 335 145-529 1-357 (359)
40 PLN00142 sucrose synthase 100.0 6.6E-30 1.4E-34 300.3 33.2 292 214-525 407-768 (815)
41 cd03795 GT1_like_4 This family 100.0 1.6E-29 3.5E-34 275.9 33.8 336 146-518 1-357 (357)
42 cd04955 GT1_like_6 This family 100.0 2.7E-29 5.8E-34 275.0 35.1 340 146-526 1-363 (363)
43 cd03801 GT1_YqgM_like This fam 100.0 1.6E-29 3.5E-34 271.8 32.6 352 146-526 1-374 (374)
44 cd03799 GT1_amsK_like This is 100.0 1.1E-29 2.5E-34 276.8 31.2 331 146-520 1-354 (355)
45 PRK14098 glycogen synthase; Pr 100.0 2.1E-29 4.6E-34 289.2 34.3 361 143-530 4-488 (489)
46 cd03802 GT1_AviGT4_like This f 100.0 1.6E-29 3.4E-34 274.1 31.0 314 145-526 1-335 (335)
47 cd03811 GT1_WabH_like This fam 100.0 2.2E-29 4.7E-34 270.0 30.6 332 146-513 1-352 (353)
48 cd03798 GT1_wlbH_like This fam 100.0 1E-28 2.2E-33 266.9 32.6 346 148-528 2-377 (377)
49 cd03823 GT1_ExpE7_like This fa 100.0 4.4E-29 9.5E-34 270.4 29.0 326 146-526 1-358 (359)
50 cd03794 GT1_wbuB_like This fam 100.0 7.3E-29 1.6E-33 270.1 30.9 351 146-521 1-393 (394)
51 cd03809 GT1_mtfB_like This fam 100.0 3.9E-29 8.4E-34 272.3 28.0 343 146-522 1-364 (365)
52 PLN02949 transferase, transfer 100.0 4E-28 8.7E-33 276.2 35.3 359 143-531 32-460 (463)
53 cd03816 GT1_ALG1_like This fam 100.0 1.9E-28 4E-33 276.7 32.2 343 144-509 3-399 (415)
54 PLN02846 digalactosyldiacylgly 100.0 3.6E-28 7.8E-33 273.5 33.8 340 143-528 3-392 (462)
55 cd03806 GT1_ALG11_like This fa 100.0 1.5E-27 3.3E-32 269.5 32.7 346 146-519 2-418 (419)
56 TIGR02918 accessory Sec system 100.0 1.4E-27 2.9E-32 274.3 28.6 277 212-528 208-500 (500)
57 KOG1111 N-acetylglucosaminyltr 100.0 2.7E-27 5.8E-32 247.7 21.2 346 146-531 2-370 (426)
58 TIGR03087 stp1 sugar transfera 100.0 2.6E-26 5.7E-31 257.4 30.0 331 156-526 13-395 (397)
59 cd04946 GT1_AmsK_like This fam 100.0 7.7E-26 1.7E-30 254.7 33.7 338 147-522 2-406 (407)
60 PLN02501 digalactosyldiacylgly 99.9 7.1E-25 1.5E-29 249.9 31.3 277 205-525 424-707 (794)
61 cd04949 GT1_gtfA_like This fam 99.9 1.6E-25 3.5E-30 247.8 24.0 271 214-521 98-372 (372)
62 cd03804 GT1_wbaZ_like This fam 99.9 5E-25 1.1E-29 242.1 27.5 318 146-521 1-350 (351)
63 PLN02275 transferase, transfer 99.9 6.7E-24 1.5E-28 236.1 29.7 302 155-489 13-371 (371)
64 PHA01630 putative group 1 glyc 99.9 1.2E-23 2.6E-28 230.1 31.2 288 162-527 15-330 (331)
65 PRK00726 murG undecaprenyldiph 99.9 6.2E-24 1.3E-28 234.6 28.0 322 145-526 2-356 (357)
66 cd03785 GT1_MurG MurG is an N- 99.9 5.8E-23 1.3E-27 225.5 28.3 313 150-519 3-349 (350)
67 PHA01633 putative glycosyl tra 99.9 1.8E-22 4E-27 219.4 26.0 303 153-523 7-335 (335)
68 PRK05749 3-deoxy-D-manno-octul 99.9 4.8E-22 1E-26 225.1 28.7 339 156-529 59-421 (425)
69 TIGR01133 murG undecaprenyldip 99.9 2.9E-22 6.3E-27 219.8 24.6 314 146-519 2-346 (348)
70 PF00534 Glycos_transf_1: Glyc 99.9 1.7E-22 3.8E-27 199.1 18.6 167 321-508 2-172 (172)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.9 1.7E-22 3.6E-27 230.9 19.3 293 214-524 130-458 (460)
72 PRK13609 diacylglycerol glucos 99.9 1.3E-21 2.9E-26 218.0 25.5 333 143-528 3-372 (380)
73 cd03793 GT1_Glycogen_synthase_ 99.9 1E-20 2.2E-25 214.3 26.8 303 214-530 147-589 (590)
74 TIGR02400 trehalose_OtsA alpha 99.9 1.1E-20 2.4E-25 214.8 25.4 283 214-525 126-454 (456)
75 KOG0853 Glycosyltransferase [C 99.9 2.3E-20 5E-25 207.7 26.0 372 143-529 33-469 (495)
76 PRK13608 diacylglycerol glucos 99.8 9.2E-20 2E-24 204.4 24.9 335 143-530 4-374 (391)
77 cd01635 Glycosyltransferase_GT 99.8 1.5E-19 3.3E-24 183.2 23.5 222 148-473 2-229 (229)
78 COG0297 GlgA Glycogen synthase 99.8 3.5E-18 7.5E-23 193.1 31.9 357 154-533 14-483 (487)
79 PLN02605 monogalactosyldiacylg 99.8 2.7E-19 5.8E-24 200.0 22.5 271 207-525 92-379 (382)
80 PLN03063 alpha,alpha-trehalose 99.8 4E-19 8.8E-24 213.8 21.2 288 215-530 147-480 (797)
81 PRK14501 putative bifunctional 99.8 5E-18 1.1E-22 204.2 20.5 284 215-530 133-465 (726)
82 cd04950 GT1_like_1 Glycosyltra 99.8 5.1E-17 1.1E-21 181.1 26.0 333 146-527 5-371 (373)
83 TIGR00236 wecB UDP-N-acetylglu 99.8 1.3E-16 2.7E-21 177.2 24.8 334 146-520 2-360 (365)
84 PRK00025 lpxB lipid-A-disaccha 99.7 7.9E-17 1.7E-21 179.4 21.8 334 146-528 3-374 (380)
85 COG0438 RfaG Glycosyltransfera 99.7 5.5E-15 1.2E-19 156.6 34.7 176 335-530 200-379 (381)
86 TIGR02398 gluc_glyc_Psyn gluco 99.7 1.1E-15 2.4E-20 173.6 25.2 207 300-526 250-481 (487)
87 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 3.3E-15 7.2E-20 165.0 23.3 301 162-502 14-345 (363)
88 KOG1387 Glycosyltransferase [C 99.7 4.9E-14 1.1E-18 147.6 27.0 195 325-532 259-463 (465)
89 PRK09814 beta-1,6-galactofuran 99.6 6.9E-14 1.5E-18 153.6 27.0 286 155-512 13-316 (333)
90 PLN03064 alpha,alpha-trehalose 99.6 4E-14 8.7E-19 170.3 21.8 287 215-529 231-563 (934)
91 KOG2941 Beta-1,4-mannosyltrans 99.6 7.5E-13 1.6E-17 138.9 27.7 343 144-516 13-430 (444)
92 PF13692 Glyco_trans_1_4: Glyc 99.6 4.3E-15 9.3E-20 140.5 9.5 131 335-491 3-135 (135)
93 TIGR03713 acc_sec_asp1 accesso 99.6 7.6E-14 1.6E-18 161.0 17.7 166 336-525 321-519 (519)
94 TIGR00215 lpxB lipid-A-disacch 99.5 7.4E-13 1.6E-17 148.3 25.0 320 144-512 5-369 (385)
95 COG0707 MurG UDP-N-acetylgluco 99.4 2.6E-11 5.7E-16 133.6 24.6 318 150-523 4-353 (357)
96 PRK12446 undecaprenyldiphospho 99.4 1.7E-10 3.7E-15 127.8 25.4 293 149-499 4-330 (352)
97 TIGR02094 more_P_ylases alpha- 99.3 2.2E-10 4.7E-15 134.2 21.5 183 330-525 385-598 (601)
98 PF13524 Glyco_trans_1_2: Glyc 99.2 3.8E-11 8.2E-16 106.4 9.7 90 426-522 1-91 (92)
99 PF00982 Glyco_transf_20: Glyc 99.1 7E-09 1.5E-13 118.5 23.6 287 214-526 140-473 (474)
100 COG1519 KdtA 3-deoxy-D-manno-o 99.1 4.8E-08 1E-12 107.1 28.4 320 157-511 59-403 (419)
101 PRK10117 trehalose-6-phosphate 99.1 6.2E-09 1.3E-13 117.8 22.3 285 215-529 123-455 (474)
102 TIGR02919 accessory Sec system 99.0 3.2E-09 6.8E-14 120.3 15.7 138 354-515 291-432 (438)
103 PF05693 Glycogen_syn: Glycoge 99.0 3.1E-08 6.7E-13 112.9 22.8 111 416-530 462-584 (633)
104 COG0380 OtsA Trehalose-6-phosp 99.0 6.7E-08 1.5E-12 109.1 22.5 286 214-527 146-479 (486)
105 PLN02205 alpha,alpha-trehalose 98.9 1.4E-07 3.1E-12 114.7 23.9 285 217-529 203-553 (854)
106 TIGR03492 conserved hypothetic 98.8 3.6E-07 7.9E-12 102.9 22.6 168 329-520 200-391 (396)
107 TIGR03590 PseG pseudaminic aci 98.8 1.6E-06 3.4E-11 93.2 25.7 247 152-458 8-269 (279)
108 COG3914 Spy Predicted O-linked 98.7 1.8E-06 3.9E-11 97.4 24.1 332 142-530 257-616 (620)
109 cd03784 GT1_Gtf_like This fami 98.6 1.4E-05 3.1E-10 89.8 28.2 82 402-491 285-372 (401)
110 PF13439 Glyco_transf_4: Glyco 98.6 5.1E-08 1.1E-12 95.0 6.8 155 153-312 8-175 (177)
111 TIGR01426 MGT glycosyltransfer 98.6 1.9E-05 4.2E-10 88.6 28.1 110 403-523 273-388 (392)
112 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 3.4E-06 7.4E-11 94.1 20.9 245 207-491 85-338 (365)
113 cd04299 GT1_Glycogen_Phosphory 98.6 8.1E-07 1.8E-11 106.5 16.7 185 330-525 474-687 (778)
114 PF13844 Glyco_transf_41: Glyc 98.6 2E-06 4.3E-11 97.3 18.7 182 324-528 275-467 (468)
115 TIGR00661 MJ1255 conserved hyp 98.5 1.9E-05 4.1E-10 86.5 23.6 81 403-491 227-314 (321)
116 PF13579 Glyco_trans_4_4: Glyc 98.5 4E-07 8.6E-12 87.1 8.5 143 157-305 1-159 (160)
117 PF13528 Glyco_trans_1_3: Glyc 98.4 2.2E-05 4.7E-10 85.3 21.1 117 332-487 191-316 (318)
118 PF04007 DUF354: Protein of un 98.4 8.1E-05 1.8E-09 81.6 25.1 278 158-491 11-310 (335)
119 PF02684 LpxB: Lipid-A-disacch 98.3 3.4E-05 7.3E-10 85.8 19.1 299 159-501 10-347 (373)
120 COG0763 LpxB Lipid A disacchar 98.3 4.6E-05 1E-09 83.2 19.6 315 145-509 2-359 (381)
121 PF13477 Glyco_trans_4_2: Glyc 98.3 2E-05 4.3E-10 74.8 14.4 100 146-251 1-110 (139)
122 COG0381 WecB UDP-N-acetylgluco 98.3 0.00036 7.7E-09 76.6 25.3 322 144-508 3-355 (383)
123 PRK01021 lpxB lipid-A-disaccha 98.2 0.00026 5.5E-09 82.3 24.3 314 144-510 226-587 (608)
124 PHA03392 egt ecdysteroid UDP-g 98.0 0.0082 1.8E-07 70.0 32.4 163 332-532 295-468 (507)
125 PF02350 Epimerase_2: UDP-N-ac 98.0 8.9E-05 1.9E-09 82.1 14.3 253 207-501 59-325 (346)
126 COG3980 spsG Spore coat polysa 98.0 0.00065 1.4E-08 71.1 19.5 293 146-506 2-305 (318)
127 COG1819 Glycosyl transferases, 98.0 0.00055 1.2E-08 77.5 20.8 128 377-525 266-399 (406)
128 COG4641 Uncharacterized protei 97.9 0.0017 3.7E-08 70.9 22.6 326 156-528 13-362 (373)
129 PRK02797 4-alpha-L-fucosyltran 97.9 0.0032 6.9E-08 67.4 23.9 272 214-530 38-319 (322)
130 PF07429 Glyco_transf_56: 4-al 97.8 0.007 1.5E-07 65.7 23.7 283 198-527 57-355 (360)
131 COG1817 Uncharacterized protei 97.7 0.0077 1.7E-07 64.1 21.3 279 158-491 11-314 (346)
132 PRK14089 ipid-A-disaccharide s 97.3 0.019 4.1E-07 63.6 19.7 96 332-456 166-261 (347)
133 PF09314 DUF1972: Domain of un 97.3 0.0076 1.6E-07 60.6 15.0 157 145-304 2-181 (185)
134 PF04101 Glyco_tran_28_C: Glyc 97.2 2.1E-05 4.4E-10 77.6 -4.0 90 407-505 56-155 (167)
135 PF08323 Glyco_transf_5: Starc 97.1 0.002 4.4E-08 67.9 9.1 39 146-184 1-43 (245)
136 PF04464 Glyphos_transf: CDP-G 97.1 0.015 3.3E-07 64.8 16.3 304 143-491 12-336 (369)
137 COG4671 Predicted glycosyl tra 96.9 0.12 2.5E-06 56.3 20.1 104 378-491 253-365 (400)
138 KOG4626 O-linked N-acetylgluco 96.8 0.047 1E-06 62.7 16.7 183 324-530 749-943 (966)
139 PF11440 AGT: DNA alpha-glucos 96.4 0.48 1E-05 50.0 19.9 301 158-491 2-353 (355)
140 PRK10017 colanic acid biosynth 96.4 1.6 3.5E-05 49.8 26.2 98 391-499 293-397 (426)
141 KOG1050 Trehalose-6-phosphate 95.4 0.99 2.2E-05 54.6 19.9 209 300-523 241-470 (732)
142 PF06258 Mito_fiss_Elm1: Mitoc 95.0 4.6 0.0001 44.2 22.2 242 158-459 2-259 (311)
143 TIGR02195 heptsyl_trn_II lipop 94.8 3.8 8.2E-05 44.9 21.3 113 321-455 161-276 (334)
144 cd03789 GT1_LPS_heptosyltransf 94.7 3.8 8.2E-05 43.7 20.5 86 351-456 137-224 (279)
145 COG3660 Predicted nucleoside-d 94.6 2.4 5.2E-05 44.6 17.3 253 156-456 10-272 (329)
146 PLN02670 transferase, transfer 94.6 0.47 1E-05 54.8 13.8 112 408-528 341-466 (472)
147 PLN02448 UDP-glycosyltransfera 94.6 0.79 1.7E-05 52.9 15.7 145 332-509 273-431 (459)
148 PF00201 UDPGT: UDP-glucoronos 94.0 0.25 5.5E-06 57.3 10.3 132 332-499 275-414 (500)
149 COG0859 RfaF ADP-heptose:LPS h 93.7 13 0.00028 40.9 23.1 101 333-456 175-277 (334)
150 PLN02410 UDP-glucoronosyl/UDP- 93.7 1 2.3E-05 51.8 14.3 93 407-508 325-423 (451)
151 PLN02562 UDP-glycosyltransfera 93.7 1.1 2.4E-05 51.6 14.4 86 407-500 329-419 (448)
152 PLN02208 glycosyltransferase f 93.4 2.2 4.8E-05 49.0 16.3 95 407-509 312-417 (442)
153 PLN02210 UDP-glucosyl transfer 93.4 1.5 3.1E-05 50.7 14.8 80 407-491 325-415 (456)
154 PLN03004 UDP-glycosyltransfera 93.4 0.6 1.3E-05 53.7 11.5 80 407-491 335-424 (451)
155 KOG3742 Glycogen synthase [Car 92.8 0.17 3.6E-06 56.2 5.5 108 416-529 493-614 (692)
156 PLN02764 glycosyltransferase f 92.4 4.7 0.0001 46.5 16.9 113 408-528 319-446 (453)
157 PLN02173 UDP-glucosyl transfer 92.1 1.7 3.7E-05 50.0 12.9 93 407-508 318-421 (449)
158 PLN03007 UDP-glucosyltransfera 91.9 3.8 8.2E-05 47.7 15.8 80 407-491 346-440 (482)
159 PLN02152 indole-3-acetate beta 90.8 3.7 8E-05 47.4 14.0 80 407-491 328-417 (455)
160 PLN02863 UDP-glucoronosyl/UDP- 90.6 7.7 0.00017 45.1 16.5 77 407-490 344-432 (477)
161 PF00343 Phosphorylase: Carboh 90.3 11 0.00024 45.5 17.4 143 330-480 440-600 (713)
162 PF05159 Capsule_synth: Capsul 90.1 2.5 5.4E-05 45.0 11.1 88 352-457 138-226 (269)
163 PLN00414 glycosyltransferase f 89.8 7 0.00015 45.0 15.1 93 408-510 314-419 (446)
164 COG0058 GlgP Glucan phosphoryl 89.6 3 6.4E-05 50.3 12.0 136 331-475 484-630 (750)
165 PF10087 DUF2325: Uncharacteri 88.3 0.94 2E-05 40.5 5.3 81 379-463 2-89 (97)
166 PF15024 Glyco_transf_18: Glyc 88.0 2.6 5.5E-05 49.1 9.8 150 335-528 278-456 (559)
167 PRK10916 ADP-heptose:LPS hepto 88.0 3.6 7.8E-05 45.5 10.9 111 324-454 170-285 (348)
168 PLN00164 glucosyltransferase; 87.7 16 0.00035 42.4 16.4 95 407-509 340-447 (480)
169 PLN02555 limonoid glucosyltran 87.5 14 0.0003 43.0 15.6 78 407-491 338-429 (480)
170 PLN02167 UDP-glycosyltransfera 87.4 12 0.00025 43.6 15.0 78 407-491 341-434 (475)
171 PF04230 PS_pyruv_trans: Polys 87.1 39 0.00084 34.7 21.9 38 413-457 247-284 (286)
172 PF01075 Glyco_transf_9: Glyco 86.5 3.2 6.9E-05 43.2 8.9 104 331-455 103-208 (247)
173 PRK10422 lipopolysaccharide co 86.5 5.3 0.00011 44.2 11.2 103 333-455 183-287 (352)
174 PRK14986 glycogen phosphorylas 86.3 3.2 7E-05 50.6 9.7 145 330-483 539-702 (815)
175 PLN02992 coniferyl-alcohol glu 86.1 21 0.00045 41.6 16.0 80 407-491 339-427 (481)
176 PLN02554 UDP-glycosyltransfera 85.3 7.4 0.00016 45.3 11.9 77 407-490 343-439 (481)
177 PF10933 DUF2827: Protein of u 85.1 68 0.0015 35.6 20.8 331 153-524 14-362 (364)
178 PLN02207 UDP-glycosyltransfera 84.5 14 0.00031 42.7 13.7 79 407-490 333-425 (468)
179 cd04300 GT1_Glycogen_Phosphory 84.5 5.6 0.00012 48.6 10.6 144 330-483 526-689 (797)
180 TIGR03609 S_layer_CsaB polysac 83.9 66 0.0014 34.5 21.9 87 353-457 190-277 (298)
181 TIGR02201 heptsyl_trn_III lipo 82.9 10 0.00022 41.8 11.3 104 332-455 180-285 (344)
182 PRK10964 ADP-heptose:LPS hepto 82.5 22 0.00048 38.7 13.7 99 332-455 177-278 (322)
183 TIGR02093 P_ylase glycogen/sta 81.8 6 0.00013 48.2 9.4 145 330-483 523-686 (794)
184 TIGR02193 heptsyl_trn_I lipopo 81.8 21 0.00045 38.8 13.1 99 332-455 178-279 (319)
185 PRK14985 maltodextrin phosphor 81.4 5.1 0.00011 48.8 8.5 145 330-483 525-688 (798)
186 KOG1192 UDP-glucuronosyl and U 81.0 39 0.00084 39.0 15.7 162 333-525 277-453 (496)
187 PLN02534 UDP-glycosyltransfera 79.6 82 0.0018 36.8 17.6 79 407-490 345-443 (491)
188 PF03016 Exostosin: Exostosin 77.6 2.2 4.9E-05 45.7 3.8 70 415-486 228-300 (302)
189 PF11071 DUF2872: Protein of u 76.4 10 0.00022 35.7 7.1 69 418-489 67-140 (141)
190 PF00862 Sucrose_synth: Sucros 73.3 16 0.00036 42.1 9.2 34 214-249 400-433 (550)
191 COG1887 TagB Putative glycosyl 72.4 1.8E+02 0.0038 33.0 19.5 75 408-491 271-353 (388)
192 PF08660 Alg14: Oligosaccharid 70.0 9.4 0.0002 38.0 5.8 90 155-246 6-127 (170)
193 KOG1021 Acetylglucosaminyltran 68.2 41 0.00089 39.0 11.4 111 375-491 289-409 (464)
194 PF12038 DUF3524: Domain of un 67.8 29 0.00062 34.4 8.3 126 146-286 2-128 (168)
195 KOG0780 Signal recognition par 65.9 18 0.00039 40.4 7.2 88 136-224 92-192 (483)
196 TIGR03646 YtoQ_fam YtoQ family 63.6 28 0.00061 32.9 7.0 100 384-489 7-143 (144)
197 KOG0832 Mitochondrial/chloropl 61.3 1.2E+02 0.0026 31.6 11.5 128 329-490 103-234 (251)
198 PF05686 Glyco_transf_90: Glyc 60.5 35 0.00076 38.7 8.7 92 434-528 222-318 (395)
199 KOG2884 26S proteasome regulat 59.6 1.4E+02 0.0031 30.8 11.7 50 442-491 178-229 (259)
200 smart00672 CAP10 Putative lipo 55.1 75 0.0016 33.8 9.6 91 434-528 153-249 (256)
201 COG2247 LytB Putative cell wal 54.6 55 0.0012 35.7 8.3 81 361-458 69-164 (337)
202 PLN03015 UDP-glucosyl transfer 54.0 27 0.00058 40.5 6.5 78 408-490 337-425 (470)
203 PRK00676 hemA glutamyl-tRNA re 52.6 1E+02 0.0022 34.2 10.4 134 377-530 175-321 (338)
204 PF03033 Glyco_transf_28: Glyc 51.9 26 0.00056 32.7 5.0 49 154-204 6-54 (139)
205 PRK04155 chaperone protein Hch 50.4 1.2E+02 0.0027 32.8 10.5 76 106-186 15-102 (287)
206 TIGR02069 cyanophycinase cyano 47.9 1.2E+02 0.0026 32.0 9.8 109 338-460 2-127 (250)
207 cd03146 GAT1_Peptidase_E Type 47.7 92 0.002 31.9 8.7 83 377-460 32-125 (212)
208 TIGR01012 Sa_S2_E_A ribosomal 47.2 1.3E+02 0.0027 30.8 9.3 122 351-491 44-170 (196)
209 cd06318 PBP1_ABC_sugar_binding 46.8 89 0.0019 32.5 8.8 88 146-248 1-88 (282)
210 TIGR02026 BchE magnesium-proto 46.7 72 0.0016 37.3 8.7 65 146-225 1-73 (497)
211 PF10093 DUF2331: Uncharacteri 46.5 1.5E+02 0.0032 33.4 10.5 110 321-458 168-291 (374)
212 PF03853 YjeF_N: YjeF-related 46.1 93 0.002 30.7 8.1 41 141-184 22-62 (169)
213 PF06925 MGDG_synth: Monogalac 46.1 36 0.00077 33.4 5.2 43 206-248 80-124 (169)
214 cd06315 PBP1_ABC_sugar_binding 45.9 1.2E+02 0.0027 31.8 9.7 86 146-246 2-87 (280)
215 PF03401 TctC: Tripartite tric 45.6 2.6E+02 0.0057 29.8 12.1 144 335-505 79-243 (274)
216 PRK13940 glutamyl-tRNA reducta 44.2 1.1E+02 0.0025 34.8 9.5 92 378-486 207-301 (414)
217 cd06310 PBP1_ABC_sugar_binding 44.1 1.3E+02 0.0029 31.0 9.6 37 146-182 1-37 (273)
218 PF04413 Glycos_transf_N: 3-De 43.5 1.5E+02 0.0032 29.8 9.3 87 157-245 31-123 (186)
219 PRK04020 rps2P 30S ribosomal p 43.0 1.5E+02 0.0033 30.4 9.2 61 423-491 114-176 (204)
220 PF00532 Peripla_BP_1: Peripla 41.8 1.8E+02 0.004 30.9 10.2 85 145-248 2-87 (279)
221 PF00072 Response_reg: Respons 41.1 1.5E+02 0.0032 25.8 8.1 93 391-486 11-112 (112)
222 PF08288 PIGA: PIGA (GPI ancho 41.1 34 0.00073 30.2 3.5 41 208-248 43-83 (90)
223 PRK10360 DNA-binding transcrip 41.1 3.1E+02 0.0067 26.4 11.2 76 415-491 37-118 (196)
224 cd06306 PBP1_TorT-like TorT-li 41.1 1.6E+02 0.0034 30.7 9.5 87 146-247 1-88 (268)
225 cd06320 PBP1_allose_binding Pe 41.1 1.5E+02 0.0033 30.7 9.4 38 146-183 1-38 (275)
226 cd06296 PBP1_CatR_like Ligand- 40.9 4.1E+02 0.009 27.1 17.4 85 147-248 2-86 (270)
227 COG0541 Ffh Signal recognition 40.6 89 0.0019 35.7 7.6 82 142-224 97-191 (451)
228 cd06302 PBP1_LsrB_Quorum_Sensi 40.5 1.7E+02 0.0037 31.1 9.8 88 146-247 1-88 (298)
229 cd06305 PBP1_methylthioribose_ 40.4 1.5E+02 0.0032 30.6 9.2 86 146-246 1-86 (273)
230 PF08465 Herpes_TK_C: Thymidin 40.0 19 0.00042 25.6 1.5 22 632-653 4-25 (33)
231 cd06300 PBP1_ABC_sugar_binding 39.6 1.7E+02 0.0036 30.3 9.4 84 146-246 1-91 (272)
232 PF01408 GFO_IDH_MocA: Oxidore 39.4 1.6E+02 0.0035 26.4 8.2 65 377-455 26-92 (120)
233 COG1663 LpxK Tetraacyldisaccha 38.4 90 0.002 34.5 7.1 45 142-186 43-89 (336)
234 PRK10840 transcriptional regul 38.3 2.4E+02 0.0052 28.3 10.1 112 377-491 4-126 (216)
235 PRK13396 3-deoxy-7-phosphohept 38.2 3.2E+02 0.0069 30.5 11.4 125 333-491 99-234 (352)
236 COG2327 WcaK Polysaccharide py 38.0 5.6E+02 0.012 29.0 13.3 90 394-491 255-350 (385)
237 cd03129 GAT1_Peptidase_E_like 38.0 2E+02 0.0044 29.2 9.4 84 377-460 30-125 (210)
238 cd03145 GAT1_cyanophycinase Ty 37.3 2.3E+02 0.0049 29.2 9.7 85 377-461 30-129 (217)
239 TIGR02574 stabl_TIGR02574 puta 36.1 32 0.0007 28.2 2.5 27 621-647 30-62 (63)
240 TIGR00064 ftsY signal recognit 36.0 2E+02 0.0043 30.8 9.3 84 142-226 69-165 (272)
241 PF10686 DUF2493: Protein of u 35.3 2.1E+02 0.0045 24.1 7.4 61 334-411 3-64 (71)
242 cd05565 PTS_IIB_lactose PTS_II 34.7 68 0.0015 29.0 4.6 75 380-457 5-80 (99)
243 PF01113 DapB_N: Dihydrodipico 34.7 36 0.00078 31.7 3.0 45 415-461 59-103 (124)
244 TIGR02955 TMAO_TorT TMAO reduc 33.7 2.3E+02 0.005 30.0 9.5 86 146-246 1-87 (295)
245 PRK09526 lacI lac repressor; R 33.7 3.6E+02 0.0078 29.0 11.2 89 143-246 62-150 (342)
246 PTZ00254 40S ribosomal protein 33.4 2.2E+02 0.0047 30.2 8.7 63 421-491 116-180 (249)
247 PRK10867 signal recognition pa 33.3 1.9E+02 0.004 33.3 9.0 41 143-184 98-139 (433)
248 PRK12585 putative monovalent c 33.1 34 0.00073 34.5 2.6 27 478-507 68-94 (197)
249 cd01574 PBP1_LacI Ligand-bindi 33.0 3.2E+02 0.0069 27.9 10.2 86 147-248 2-87 (264)
250 TIGR00853 pts-lac PTS system, 33.0 68 0.0015 28.6 4.3 74 379-457 7-83 (95)
251 COG1647 Esterase/lipase [Gener 32.6 1.2E+02 0.0025 31.7 6.3 95 147-245 18-113 (243)
252 TIGR01425 SRP54_euk signal rec 32.3 1.9E+02 0.004 33.3 8.7 41 143-184 98-138 (429)
253 PF02310 B12-binding: B12 bind 32.1 2.4E+02 0.0052 25.4 8.1 45 161-223 15-59 (121)
254 cd01538 PBP1_ABC_xylose_bindin 32.0 2.3E+02 0.005 29.8 9.1 87 147-248 2-88 (288)
255 cd05564 PTS_IIB_chitobiose_lic 31.9 67 0.0015 28.6 4.1 74 379-457 3-79 (96)
256 cd06284 PBP1_LacI_like_6 Ligan 31.9 5.6E+02 0.012 26.0 18.9 83 147-247 2-84 (267)
257 KOG2678 Predicted membrane pro 31.6 47 0.001 34.2 3.3 31 37-68 205-236 (244)
258 TIGR03837 efp_adjacent_2 conse 31.4 4.2E+02 0.0092 29.7 10.9 108 323-457 169-288 (371)
259 cd05312 NAD_bind_1_malic_enz N 30.9 2.1E+02 0.0046 30.9 8.3 38 416-454 96-137 (279)
260 cd06312 PBP1_ABC_sugar_binding 30.8 2.8E+02 0.0062 28.6 9.5 38 146-183 1-39 (271)
261 PRK13011 formyltetrahydrofolat 30.4 2E+02 0.0043 31.2 8.2 100 141-249 86-195 (286)
262 PRK10653 D-ribose transporter 30.4 3.3E+02 0.0072 28.7 10.1 44 139-182 21-64 (295)
263 PF10649 DUF2478: Protein of u 30.2 71 0.0015 31.4 4.3 39 417-455 86-129 (159)
264 cd06293 PBP1_LacI_like_11 Liga 30.2 2.8E+02 0.006 28.6 9.3 84 147-248 2-86 (269)
265 PF08497 Radical_SAM_N: Radica 30.1 3.7E+02 0.008 29.2 9.8 57 141-197 13-69 (302)
266 cd06297 PBP1_LacI_like_12 Liga 29.8 3.6E+02 0.0079 27.9 10.1 84 147-247 2-85 (269)
267 PRK05282 (alpha)-aspartyl dipe 29.4 3.1E+02 0.0067 28.7 9.2 81 377-460 32-124 (233)
268 PRK10423 transcriptional repre 29.3 4.5E+02 0.0098 27.9 11.0 88 143-246 55-142 (327)
269 cd06316 PBP1_ABC_sugar_binding 29.0 3.2E+02 0.0069 28.7 9.6 36 146-181 1-36 (294)
270 PRK10936 TMAO reductase system 28.9 4.1E+02 0.0089 29.0 10.7 88 144-246 46-134 (343)
271 cd06323 PBP1_ribose_binding Pe 28.8 2.6E+02 0.0055 28.6 8.6 85 147-246 2-86 (268)
272 KOG2264 Exostosin EXT1L [Signa 28.1 5.7E+02 0.012 30.2 11.3 119 408-533 401-530 (907)
273 PRK11574 oxidative-stress-resi 28.0 3.2E+02 0.007 27.2 8.9 101 143-250 1-109 (196)
274 cd01080 NAD_bind_m-THF_DH_Cycl 28.0 1.6E+02 0.0035 29.2 6.4 51 377-434 45-98 (168)
275 PRK10355 xylF D-xylose transpo 27.9 3.2E+02 0.007 29.7 9.6 86 143-246 24-112 (330)
276 TIGR02106 cyd_oper_ybgT cyd op 27.8 89 0.0019 21.9 3.1 20 49-68 3-22 (30)
277 TIGR03499 FlhF flagellar biosy 27.8 2.8E+02 0.006 29.8 8.8 80 144-224 193-281 (282)
278 COG0373 HemA Glutamyl-tRNA red 27.6 9.7E+02 0.021 27.4 17.0 94 378-482 204-301 (414)
279 PRK12726 flagellar biosynthesi 27.4 2.7E+02 0.0058 31.7 8.6 86 140-226 201-296 (407)
280 PRK09701 D-allose transporter 27.3 4.1E+02 0.0089 28.4 10.2 92 143-248 23-115 (311)
281 cd06319 PBP1_ABC_sugar_binding 27.3 3.4E+02 0.0073 28.0 9.3 38 146-183 1-38 (277)
282 cd01540 PBP1_arabinose_binding 27.3 3.4E+02 0.0073 28.3 9.4 85 146-246 1-85 (289)
283 cd06304 PBP1_BmpA_like Peripla 27.1 4.2E+02 0.0091 27.3 10.0 86 146-248 1-88 (260)
284 cd01129 PulE-GspE PulE/GspE Th 27.1 2.9E+02 0.0063 29.3 8.7 106 149-259 83-193 (264)
285 cd06322 PBP1_ABC_sugar_binding 27.1 3.2E+02 0.0069 28.0 9.0 82 147-246 2-86 (267)
286 cd01575 PBP1_GntR Ligand-bindi 27.1 4.2E+02 0.0091 26.9 9.9 82 147-246 2-84 (268)
287 cd06317 PBP1_ABC_sugar_binding 27.0 2.8E+02 0.006 28.5 8.6 82 147-246 2-87 (275)
288 COG2120 Uncharacterized protei 27.0 1.9E+02 0.0041 30.3 7.1 42 143-186 9-50 (237)
289 cd06308 PBP1_sensor_kinase_lik 27.0 2.9E+02 0.0063 28.4 8.7 83 146-246 1-87 (270)
290 cd06354 PBP1_BmpA_PnrA_like Pe 26.8 4.3E+02 0.0092 27.5 10.0 84 146-246 1-87 (265)
291 KOG3349 Predicted glycosyltran 26.7 2.5E+02 0.0055 27.5 7.1 42 408-455 65-106 (170)
292 PF03358 FMN_red: NADPH-depend 26.0 1.6E+02 0.0035 27.8 6.0 41 145-185 1-42 (152)
293 cd01542 PBP1_TreR_like Ligand- 26.0 5.2E+02 0.011 26.2 10.4 84 147-248 2-86 (259)
294 TIGR02896 spore_III_AF stage I 25.8 74 0.0016 29.1 3.3 24 51-74 5-28 (106)
295 cd06274 PBP1_FruR Ligand bindi 25.4 4.5E+02 0.0097 26.9 9.8 84 147-248 2-86 (264)
296 TIGR00655 PurU formyltetrahydr 25.3 3.5E+02 0.0077 29.1 9.0 100 141-249 81-190 (280)
297 cd06280 PBP1_LacI_like_4 Ligan 25.2 4.7E+02 0.01 26.8 9.9 83 147-247 2-84 (263)
298 COG1609 PurR Transcriptional r 25.1 5.4E+02 0.012 28.2 10.7 89 143-248 57-145 (333)
299 COG0569 TrkA K+ transport syst 24.5 2.1E+02 0.0045 29.7 6.8 92 158-249 7-102 (225)
300 TIGR03446 mycothiol_Mca mycoth 24.4 4E+02 0.0086 28.8 9.2 39 146-186 2-40 (283)
301 PRK14749 hypothetical protein; 24.4 1.2E+02 0.0025 21.2 3.1 21 49-69 3-23 (30)
302 PF11997 DUF3492: Domain of un 24.3 1.8E+02 0.0039 31.1 6.5 35 214-249 171-205 (268)
303 cd06292 PBP1_LacI_like_10 Liga 24.3 4.6E+02 0.01 26.9 9.7 84 147-248 2-91 (273)
304 COG2984 ABC-type uncharacteriz 24.2 2.3E+02 0.0049 31.2 7.1 68 389-458 175-248 (322)
305 cd06281 PBP1_LacI_like_5 Ligan 24.1 4E+02 0.0087 27.4 9.1 85 147-248 2-87 (269)
306 PF13407 Peripla_BP_4: Peripla 24.1 2.5E+02 0.0055 28.7 7.5 86 147-246 1-86 (257)
307 PF06258 Mito_fiss_Elm1: Mitoc 24.0 7E+02 0.015 27.3 11.1 49 330-386 109-157 (311)
308 PHA00453 hypothetical protein 23.7 28 0.00061 25.4 0.1 10 740-749 32-41 (41)
309 PRK09739 hypothetical protein; 23.7 4E+02 0.0087 26.7 8.7 41 144-184 3-44 (199)
310 cd06275 PBP1_PurR Ligand-bindi 23.4 6.6E+02 0.014 25.6 10.6 85 147-248 2-87 (269)
311 PRK05718 keto-hydroxyglutarate 23.3 3.4E+02 0.0074 28.0 8.1 79 357-454 54-133 (212)
312 PRK05583 ribosomal protein L7A 23.2 4E+02 0.0086 24.2 7.6 79 351-446 20-98 (104)
313 COG0062 Uncharacterized conser 23.2 8.3E+02 0.018 25.1 10.8 116 322-459 38-161 (203)
314 PRK13398 3-deoxy-7-phosphohept 23.2 9.3E+02 0.02 25.7 12.0 102 336-456 28-141 (266)
315 PRK12815 carB carbamoyl phosph 23.1 2.8E+02 0.0061 35.8 9.0 80 144-224 555-639 (1068)
316 cd06285 PBP1_LacI_like_7 Ligan 23.1 5.4E+02 0.012 26.3 9.9 84 147-248 2-86 (265)
317 PRK10494 hypothetical protein; 23.0 3.1E+02 0.0066 29.2 7.9 94 354-458 107-210 (259)
318 PRK00771 signal recognition pa 23.0 3.4E+02 0.0075 31.2 8.8 41 143-184 93-133 (437)
319 cd06299 PBP1_LacI_like_13 Liga 23.0 5.8E+02 0.013 25.9 10.0 83 147-247 2-85 (265)
320 COG1618 Predicted nucleotide k 23.0 1.8E+02 0.0039 29.0 5.5 75 416-491 93-177 (179)
321 PRK06027 purU formyltetrahydro 23.0 2.8E+02 0.0061 29.9 7.7 100 141-249 86-195 (286)
322 PF00448 SRP54: SRP54-type pro 22.8 3.4E+02 0.0075 27.4 7.9 80 145-225 1-93 (196)
323 PRK01372 ddl D-alanine--D-alan 22.8 2.4E+02 0.0051 30.2 7.2 42 142-183 2-45 (304)
324 PRK13302 putative L-aspartate 22.7 3.2E+02 0.007 29.1 8.1 69 377-458 32-100 (271)
325 cd06270 PBP1_GalS_like Ligand 22.6 5.6E+02 0.012 26.2 9.9 84 147-248 2-86 (268)
326 PRK06849 hypothetical protein; 22.5 3.6E+02 0.0078 30.2 8.9 64 162-226 16-87 (389)
327 PF05014 Nuc_deoxyrib_tr: Nucl 22.5 75 0.0016 28.9 2.8 39 418-456 56-96 (113)
328 PF02606 LpxK: Tetraacyldisacc 22.5 97 0.0021 34.2 4.1 43 143-185 32-76 (326)
329 cd06273 PBP1_GntR_like_1 This 22.4 5.9E+02 0.013 25.9 10.0 83 147-246 2-84 (268)
330 PRK01906 tetraacyldisaccharide 22.3 1.2E+02 0.0025 33.8 4.7 41 145-185 55-97 (338)
331 cd01536 PBP1_ABC_sugar_binding 22.2 4.4E+02 0.0096 26.6 8.9 85 146-248 1-88 (267)
332 TIGR02417 fruct_sucro_rep D-fr 22.2 7.8E+02 0.017 26.2 11.2 87 143-247 59-147 (327)
333 PRK10416 signal recognition pa 22.0 4.9E+02 0.011 28.6 9.5 41 143-184 112-152 (318)
334 cd01020 TroA_b Metal binding p 22.0 5.1E+02 0.011 27.3 9.4 103 416-527 45-150 (264)
335 PRK12724 flagellar biosynthesi 21.9 4E+02 0.0087 30.6 8.8 81 143-224 221-308 (432)
336 PRK11303 DNA-binding transcrip 21.8 5.7E+02 0.012 27.3 10.0 86 143-246 60-147 (328)
337 PF12273 RCR: Chitin synthesis 21.7 47 0.001 31.3 1.3 6 52-57 2-7 (130)
338 TIGR01761 thiaz-red thiazoliny 21.6 3.8E+02 0.0082 29.8 8.5 126 335-491 4-136 (343)
339 PHA02518 ParA-like protein; Pr 21.5 4.9E+02 0.011 25.8 8.9 30 157-186 12-41 (211)
340 cd06282 PBP1_GntR_like_2 Ligan 21.5 4.9E+02 0.011 26.4 9.1 82 147-246 2-85 (266)
341 PF01884 PcrB: PcrB family; I 21.4 2E+02 0.0043 30.1 5.9 69 377-451 33-102 (230)
342 cd06298 PBP1_CcpA_like Ligand- 21.1 6.5E+02 0.014 25.5 10.0 84 147-248 2-86 (268)
343 PRK11889 flhF flagellar biosyn 21.1 3.9E+02 0.0085 30.6 8.4 80 145-225 241-330 (436)
344 PF01081 Aldolase: KDPG and KH 20.9 3E+02 0.0066 28.0 7.0 79 357-454 47-126 (196)
345 TIGR01007 eps_fam capsular exo 20.8 1.9E+02 0.0041 29.0 5.6 42 143-184 15-56 (204)
346 cd01967 Nitrogenase_MoFe_alpha 20.8 1.1E+03 0.024 26.3 12.5 119 351-491 136-258 (406)
347 cd06277 PBP1_LacI_like_1 Ligan 20.7 7.6E+02 0.016 25.2 10.4 83 147-247 2-87 (268)
348 PF02532 PsbI: Photosystem II 20.6 1.5E+02 0.0033 21.5 3.2 23 50-72 4-26 (36)
349 KOG0780 Signal recognition par 20.5 9.6E+02 0.021 27.4 11.0 150 351-526 167-341 (483)
350 PRK13435 response regulator; P 20.5 6.6E+02 0.014 22.9 9.5 111 377-491 6-121 (145)
351 KOG1838 Alpha/beta hydrolase [ 20.5 1.5E+02 0.0032 33.7 5.0 40 145-184 125-164 (409)
352 cd01545 PBP1_SalR Ligand-bindi 20.5 6E+02 0.013 25.9 9.6 85 147-248 2-88 (270)
353 PRK10014 DNA-binding transcrip 20.4 6.6E+02 0.014 26.9 10.2 86 143-246 63-150 (342)
354 PRK00048 dihydrodipicolinate r 20.4 1.8E+02 0.0039 30.8 5.5 42 415-458 52-93 (257)
355 TIGR00460 fmt methionyl-tRNA f 20.2 3.6E+02 0.0078 29.4 8.0 85 162-251 11-110 (313)
356 PRK10017 colanic acid biosynth 20.2 6.1E+02 0.013 29.1 10.1 41 337-387 3-45 (426)
357 PRK10703 DNA-binding transcrip 20.2 8.6E+02 0.019 26.0 11.1 87 144-247 59-146 (341)
358 TIGR00682 lpxK tetraacyldisacc 20.1 1.3E+02 0.0028 33.0 4.4 42 144-185 26-69 (311)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.2e-35 Score=329.20 Aligned_cols=358 Identities=15% Similarity=0.169 Sum_probs=266.0
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC-CcchhhhhhcCccEEEccc--------chhHHHHhhhc
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQT--------GREKASFVNWL 214 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~-~~~~~~~~~~gi~i~~l~~--------~~~l~~~i~~~ 214 (774)
+|+|++|+..+..||+|+++.++++.|.+.||++.|++..+ ++........++.+..+.. ...+.++++..
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQL 80 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999998654 3333344455666554432 12345567778
Q ss_pred CccEEEEcCCchhHHHHHHHhCCCCCCCE-EEEEcCchhhhhHHHhhhhhhhHHHHHHHH-HHHhccEEEccCCcch-hh
Q 004092 215 NYDGILVNSLEAKVVISNIMQEPFKSLPL-VWTIHEGTLATRARNYASSGQLELLNDWKK-VFNRATVVVFPDYVLP-MM 291 (774)
Q Consensus 215 ~~DIIhvhs~~~~~~l~~Ll~~~~~~ipv-I~tiHg~~l~~~~~k~~~~~~~~li~~~~~-~~~~a~~vv~ps~~~~-~i 291 (774)
+||+||+|+... ....+... ..++|+ +++.|+........... . ....++ ....++.++..+.... ..
T Consensus 81 ~~Divh~~~~~~--~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~i~vs~~~~~~~ 151 (374)
T TIGR03088 81 RPDIVHTRNLAA--LEAQLPAA-LAGVPARIHGEHGRDVFDLDGSNW---K---YRWLRRLYRPLIHHYVAVSRDLEDWL 151 (374)
T ss_pred CCCEEEEcchhH--HHHHHHHH-hcCCCeEEEeecCcccccchhhHH---H---HHHHHHHHHhcCCeEEEeCHHHHHHH
Confidence 999999998644 22222222 234553 56666532221100000 0 001111 2223455555444421 12
Q ss_pred --cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 004092 292 --YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (774)
Q Consensus 292 --~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~ 369 (774)
..++...++.+|| +|+|...+.+... .....+.+....++.++++++| ++.+. ||++.+++|+..+.++.++
T Consensus 152 ~~~~~~~~~~~~vi~-ngvd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~~l~~~~~~ 225 (374)
T TIGR03088 152 RGPVKVPPAKIHQIY-NGVDTERFHPSRG-DRSPILPPDFFADESVVVGTVG-RLQAV---KDQPTLVRAFALLVRQLPE 225 (374)
T ss_pred HHhcCCChhhEEEec-cCccccccCCCcc-chhhhhHhhcCCCCCeEEEEEe-cCCcc---cCHHHHHHHHHHHHHhCcc
Confidence 2234567888998 4888744432221 1222333444566778999999 88888 9999999999999877653
Q ss_pred CCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHc
Q 004092 370 ENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF 448 (774)
Q Consensus 370 ~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~ 448 (774)
...+++|+++| |+.. +.+++.++++++.+ +|.|+|..+|+..+|++||++|+||..| |||++++|||+|
T Consensus 226 ---~~~~~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~pS~~E--g~~~~~lEAma~ 295 (374)
T TIGR03088 226 ---GAERLRLVIVGDGPAR----GACEQMVRAAGLAH-LVWLPGERDDVPALMQALDLFVLPSLAE--GISNTILEAMAS 295 (374)
T ss_pred ---cccceEEEEecCCchH----HHHHHHHHHcCCcc-eEEEcCCcCCHHHHHHhcCEEEeccccc--cCchHHHHHHHc
Confidence 11239999999 8765 67889999999988 8999999999999999999999999988 899999999999
Q ss_pred CCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 004092 449 RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (774)
Q Consensus 449 G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~ 527 (774)
|+|||+|+.+|..|++.++.+|++++++|+++++++|.+++++ ++.+.+|+++|++.+ ++|+|+.++++|.++|++
T Consensus 296 G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 296 GLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSD---PAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999998 689999999999999987
Q ss_pred Hh
Q 004092 528 VL 529 (774)
Q Consensus 528 ll 529 (774)
++
T Consensus 373 ~~ 374 (374)
T TIGR03088 373 LL 374 (374)
T ss_pred hC
Confidence 63
No 2
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2e-34 Score=323.11 Aligned_cols=352 Identities=16% Similarity=0.165 Sum_probs=262.1
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch--hhhhhcCccEEEcccc-------hh------------HHHHhh--
Q 004092 156 IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH--EVWRNIGVPVAILQTG-------RE------------KASFVN-- 212 (774)
Q Consensus 156 ~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~--~~~~~~gi~i~~l~~~-------~~------------l~~~i~-- 212 (774)
.||++.++.+|+++|.++||+|+|+|....... ......++.+..++.. .. +...++
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 699999999999999999999999997543211 1111234444433210 00 011122
Q ss_pred hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhh--hhH-HHHH-HHHHHHhccEEEccCCc-
Q 004092 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSG--QLE-LLND-WKKVFNRATVVVFPDYV- 287 (774)
Q Consensus 213 ~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~--~~~-li~~-~~~~~~~a~~vv~ps~~- 287 (774)
..+||+||+|.... .....++. +..++|+|+|+|+..... ..+.... ... .... .+..+..++.+++.+..
T Consensus 99 ~~~~Diih~h~~~~-~~~~~~~~-~~~~~p~v~t~h~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~ 174 (405)
T TIGR03449 99 PGYYDLIHSHYWLS-GQVGWLLR-DRWGVPLVHTAHTLAAVK--NAALADGDTPEPEARRIGEQQLVDNADRLIANTDEE 174 (405)
T ss_pred CCCCCeEEechHHH-HHHHHHHH-HhcCCCEEEeccchHHHH--HHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHH
Confidence 14799999998655 34444443 356789999999632111 1111000 000 1111 12355677777776554
Q ss_pred chh--hcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchh
Q 004092 288 LPM--MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (774)
Q Consensus 288 ~~~--i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~ 365 (774)
... ...+.+.+++.+|| +|+|...+. +.++...+.++++++++++++++| ++.+. ||++.+++|++.+.+
T Consensus 175 ~~~~~~~~~~~~~ki~vi~-ngvd~~~~~---~~~~~~~~~~~~~~~~~~~i~~~G-~l~~~---K~~~~li~a~~~l~~ 246 (405)
T TIGR03449 175 ARDLVRHYDADPDRIDVVA-PGADLERFR---PGDRATERARLGLPLDTKVVAFVG-RIQPL---KAPDVLLRAVAELLD 246 (405)
T ss_pred HHHHHHHcCCChhhEEEEC-CCcCHHHcC---CCcHHHHHHhcCCCCCCcEEEEec-CCCcc---cCHHHHHHHHHHHHh
Confidence 221 12345567889999 488874332 223455678889888888999999 88888 999999999999987
Q ss_pred hcccCCCCCCCeEEEEEeCCC-CC-chHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHH
Q 004092 366 EVSVENESNSPIKVMILSGDS-TS-NYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (774)
Q Consensus 366 ~~p~~~~~~~~v~LvIvGG~~-~e-~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~ 441 (774)
++|+ .+++|+|+|++. .. .+.+.++++++++++.+ +|.|+|++ +++..+|+.||++|+||..| |||++
T Consensus 247 ~~~~-----~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~-~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E--~~g~~ 318 (405)
T TIGR03449 247 RDPD-----RNLRVIVVGGPSGSGLATPDALIELAAELGIAD-RVRFLPPRPPEELVHVYRAADVVAVPSYNE--SFGLV 318 (405)
T ss_pred hCCC-----cceEEEEEeCCCCCcchHHHHHHHHHHHcCCCc-eEEECCCCCHHHHHHHHHhCCEEEECCCCC--CcChH
Confidence 6653 238999999533 22 45678999999999988 89999976 78999999999999999988 89999
Q ss_pred HHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004092 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGY 521 (774)
Q Consensus 442 llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y 521 (774)
++|||++|+|||+++.++..|++.++.+|++++++|+++++++|.+++++ ++.+++|++++++.+++|+|+.++++|
T Consensus 319 ~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~---~~~~~~~~~~~~~~~~~fsw~~~~~~~ 395 (405)
T TIGR03449 319 AMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDD---PRTRIRMGAAAVEHAAGFSWAATADGL 395 (405)
T ss_pred HHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999998889999999999
Q ss_pred HHHHHHHhc
Q 004092 522 AMLLENVLK 530 (774)
Q Consensus 522 ~~L~e~ll~ 530 (774)
.++|.+++.
T Consensus 396 ~~~y~~~~~ 404 (405)
T TIGR03449 396 LSSYRDALA 404 (405)
T ss_pred HHHHHHHhh
Confidence 999998763
No 3
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3e-34 Score=316.10 Aligned_cols=350 Identities=14% Similarity=0.159 Sum_probs=258.4
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEc---------------ccchhHHH
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAIL---------------QTGREKAS 209 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l---------------~~~~~l~~ 209 (774)
+||+++.. ...||.+.++.++++.|.++||+|+|++....... .....++.+..+ .....+.+
T Consensus 1 mki~~~~~-p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (371)
T cd04962 1 MKIGIVCY-PTYGGSGVVATELGKALARRGHEVHFITSSRPFRL-DEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAE 78 (371)
T ss_pred CceeEEEE-eCCCCccchHHHHHHHHHhcCCceEEEecCCCcch-hhhccCeEEEEecccccchhhcchhHHHHHHHHHH
Confidence 36777764 35799999999999999999999999987542111 111111111100 01123445
Q ss_pred HhhhcCccEEEEcCCchhHHHHHHHh--CCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc
Q 004092 210 FVNWLNYDGILVNSLEAKVVISNIMQ--EPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (774)
Q Consensus 210 ~i~~~~~DIIhvhs~~~~~~l~~Ll~--~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~ 287 (774)
.++..+||+||+|+.........+.. ....++|+|+++|+...... .. ... .....+..+..++.+.+.+..
T Consensus 79 ~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--~~-~~~---~~~~~~~~~~~~d~ii~~s~~ 152 (371)
T cd04962 79 VAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLV--GQ-DPS---FQPATRFSIEKSDGVTAVSES 152 (371)
T ss_pred HHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccc--cc-ccc---chHHHHHHHhhCCEEEEcCHH
Confidence 56678999999997654212222221 11237999999997432210 00 000 011123345567766666555
Q ss_pred chh-hcc-cCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchh
Q 004092 288 LPM-MYS-AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (774)
Q Consensus 288 ~~~-i~~-~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~ 365 (774)
... ... .....++.+||+ ++|...+. .......+.+++..++.++++++| ++.+. ||++.+++|+..+.+
T Consensus 153 ~~~~~~~~~~~~~~i~vi~n-~~~~~~~~---~~~~~~~~~~~~~~~~~~~il~~g-~l~~~---K~~~~li~a~~~l~~ 224 (371)
T cd04962 153 LRQETYELFDITKEIEVIPN-FVDEDRFR---PKPDEALKRRLGAPEGEKVLIHIS-NFRPV---KRIDDVIRIFAKVRK 224 (371)
T ss_pred HHHHHHHhcCCcCCEEEecC-CcCHhhcC---CCchHHHHHhcCCCCCCeEEEEec-ccccc---cCHHHHHHHHHHHHh
Confidence 221 111 123467889994 67763222 222344567788888889999999 88888 999999999999876
Q ss_pred hcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHH
Q 004092 366 EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (774)
Q Consensus 366 ~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llE 444 (774)
+ ++ ++++++| |+.. +.+++.++++++.+ +|.|+|+.+++.++|+.||++|+||..| |||++++|
T Consensus 225 ~-~~-------~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~v~ps~~E--~~~~~~~E 289 (371)
T cd04962 225 E-VP-------ARLLLVGDGPER----SPAERLARELGLQD-DVLFLGKQDHVEELLSIADLFLLPSEKE--SFGLAALE 289 (371)
T ss_pred c-CC-------ceEEEEcCCcCH----HHHHHHHHHcCCCc-eEEEecCcccHHHHHHhcCEEEeCCCcC--CCccHHHH
Confidence 5 34 7999999 7655 67888999999987 8999999999999999999999999988 89999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 004092 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (774)
Q Consensus 445 AMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~ 523 (774)
||+||+|||+|+.++..|++.++.+|++++++|+++++++|..++++ ++.+.+|++++++.+ ++|+|+.++++|.+
T Consensus 290 Ama~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 366 (371)
T cd04962 290 AMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLED---DELWQEFSRAARNRAAERFDSERIVPQYEA 366 (371)
T ss_pred HHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999996 78999999999999
Q ss_pred HHHHH
Q 004092 524 LLENV 528 (774)
Q Consensus 524 L~e~l 528 (774)
+|+++
T Consensus 367 ~y~~~ 371 (371)
T cd04962 367 LYRRL 371 (371)
T ss_pred HHHhC
Confidence 99863
No 4
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=8.6e-34 Score=324.67 Aligned_cols=353 Identities=14% Similarity=0.153 Sum_probs=257.7
Q ss_pred CCCCeEEEEec---CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEE---------------Eccc
Q 004092 142 YRKPQLALVFP---DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVA---------------ILQT 203 (774)
Q Consensus 142 ~rk~rialV~~---~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~---------------~l~~ 203 (774)
.+|+||++++. ....||++.++.++++.|.++||+|+|++...+... .. .++.+. ....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~-~~--~g~~v~~~~~~~~~~~~~~~~~~~~ 132 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ-EF--HGAKVIGSWSFPCPFYQKVPLSLAL 132 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-cc--cCceeeccCCcCCccCCCceeeccC
Confidence 77899998864 335799999999999999999999999997653211 11 111110 0111
Q ss_pred chhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhh-hhhhHHHHHHHHHHHhccEEE
Q 004092 204 GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYAS-SGQLELLNDWKKVFNRATVVV 282 (774)
Q Consensus 204 ~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~-~~~~~li~~~~~~~~~a~~vv 282 (774)
...+...++..+||+||+|++........++. +..++|+|++.|+....+ ...+.. .....+....+..+..++.++
T Consensus 133 ~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~a-k~~~ip~V~~~h~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~ad~ii 210 (465)
T PLN02871 133 SPRIISEVARFKPDLIHASSPGIMVFGALFYA-KLLCVPLVMSYHTHVPVY-IPRYTFSWLVKPMWDIIRFLHRAADLTL 210 (465)
T ss_pred CHHHHHHHHhCCCCEEEECCCchhHHHHHHHH-HHhCCCEEEEEecCchhh-hhcccchhhHHHHHHHHHHHHhhCCEEE
Confidence 12455667778999999998765322233332 356799999999742111 111110 001111112233456677777
Q ss_pred ccCCcchh--hccc-CCCCCEEEeCCCCCCcccccccCchhhHHHHHHhC-CCCCCEEEEEEecccccccccccHHHHHH
Q 004092 283 FPDYVLPM--MYSA-FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMG-FKPDDLVIAIVGTQFMYRGLWLEHALILR 358 (774)
Q Consensus 283 ~ps~~~~~--i~~~-v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lg-l~~~~~vIl~vGsrl~~~KgiKg~~lLLe 358 (774)
+.+..... .... .+..++.+|| +|+|...+.+... ....+.++. ..+++++|+++| ++.+. ||++.+++
T Consensus 211 ~~S~~~~~~l~~~~~~~~~kv~vi~-nGvd~~~f~p~~~--~~~~~~~~~~~~~~~~~i~~vG-rl~~~---K~~~~li~ 283 (465)
T PLN02871 211 VTSPALGKELEAAGVTAANRIRVWN-KGVDSESFHPRFR--SEEMRARLSGGEPEKPLIVYVG-RLGAE---KNLDFLKR 283 (465)
T ss_pred ECCHHHHHHHHHcCCCCcCeEEEeC-CccCccccCCccc--cHHHHHHhcCCCCCCeEEEEeC-CCchh---hhHHHHHH
Confidence 76655321 1122 2356788898 4888754433211 233455543 345678899999 88888 99999999
Q ss_pred HHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCc
Q 004092 359 ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEE 435 (774)
Q Consensus 359 A~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~ 435 (774)
+++.+ |+ ++|+|+| |+.. +.++++++. . +|.|+|++ +++..+|+.||++|+||..|
T Consensus 284 a~~~~----~~-------~~l~ivG~G~~~----~~l~~~~~~----~-~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E- 342 (465)
T PLN02871 284 VMERL----PG-------ARLAFVGDGPYR----EELEKMFAG----T-PTVFTGMLQGDELSQAYASGDVFVMPSESE- 342 (465)
T ss_pred HHHhC----CC-------cEEEEEeCChHH----HHHHHHhcc----C-CeEEeccCCHHHHHHHHHHCCEEEECCccc-
Confidence 98765 35 8999999 7654 667777662 3 69999988 78999999999999999988
Q ss_pred CCccHHHHHHHHcCCCEEEcCCccccccccc---CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc
Q 004092 436 QTFPEILVKALCFRKPIIAPDLSNIRKYVDD---RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNL 512 (774)
Q Consensus 436 qGfp~~llEAMA~G~PVIatd~ggi~EiV~d---g~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~f 512 (774)
+||++++||||||+|||+|+.+|+.|++.+ +.+|++++++|+++++++|.++++| ++.+++|++++++.+++|
T Consensus 343 -~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~f 418 (465)
T PLN02871 343 -TLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD---PELRERMGAAAREEVEKW 418 (465)
T ss_pred -ccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999998 9999999999999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhcC
Q 004092 513 MALETIEGYAM-LLENVLKL 531 (774)
Q Consensus 513 s~~~~a~~y~~-L~e~ll~~ 531 (774)
+|+.+++++.+ .|+.++..
T Consensus 419 sw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 419 DWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 69887653
No 5
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.1e-33 Score=332.61 Aligned_cols=355 Identities=11% Similarity=0.105 Sum_probs=257.5
Q ss_pred CCCCC-eEEEEecCCCCChHHHHHHHHHHHHHHcCC------------eEEEEEc----CCC--cchhhhhhcCccEEEc
Q 004092 141 GYRKP-QLALVFPDLLIDPQQLQMVTIAIALREIGY------------AIQVYSL----EDG--RAHEVWRNIGVPVAIL 201 (774)
Q Consensus 141 ~~rk~-rialV~~~L~~GG~e~~v~~Lak~L~~~G~------------eV~V~t~----~~~--~~~~~~~~~gi~i~~l 201 (774)
..++. ||++|++++..||+|+++.+|+.+|...++ .+.|++. ..+ .....+...|+++..+
T Consensus 277 ~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l 356 (694)
T PRK15179 277 PESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVY 356 (694)
T ss_pred CCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEe
Confidence 45677 899999999999999999999999999965 3444442 222 2333455667776555
Q ss_pred ccc------------------------------hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEE-EEcCc
Q 004092 202 QTG------------------------------REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVW-TIHEG 250 (774)
Q Consensus 202 ~~~------------------------------~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~-tiHg~ 250 (774)
... ..+..+++..+|||||+|+.... .+..+.. +..++|+|+ +.|+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~-~lg~lAa-~~~gvPvIv~t~h~~ 434 (694)
T PRK15179 357 SDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSI-FACALAA-LLAGVPRIVLSVRTM 434 (694)
T ss_pred ccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHH-HHHHHHH-HHcCCCEEEEEeCCC
Confidence 321 22344567789999999988773 4444443 345688876 56753
Q ss_pred hhhhhHHHhhhhhhhHHHHHHHHHHHhcc-EEEccCCc-ch--h-hcccCCCCCEEEeCCCCCCcccccccCchhhHHHH
Q 004092 251 TLATRARNYASSGQLELLNDWKKVFNRAT-VVVFPDYV-LP--M-MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVR 325 (774)
Q Consensus 251 ~l~~~~~k~~~~~~~~li~~~~~~~~~a~-~vv~ps~~-~~--~-i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR 325 (774)
+.......+. . .... .+.. +...+ .+.+.++. .. + ...+++.+++.+|| +|+|...+...+.. ...+
T Consensus 435 ~~~~~~~~~~-~-~~~~--l~~~-l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~-NGVd~~~f~~~~~~--~~~~ 506 (694)
T PRK15179 435 PPVDRPDRYR-V-EYDI--IYSE-LLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVY-NGLAPLKSVQDDAC--TAMM 506 (694)
T ss_pred ccccchhHHH-H-HHHH--HHHH-HHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEEC-CCcCHHhcCCCchh--hHHH
Confidence 2211111110 0 0000 0111 11112 22222222 11 1 12346667899999 48887444321111 1111
Q ss_pred HH--hCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcC
Q 004092 326 VK--MGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH 402 (774)
Q Consensus 326 ~~--lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lg 402 (774)
.. ...+++.++|+++| |+.+. ||++.+++|+..+.+++|+ ++|+|+| |+.. +.+++++++++
T Consensus 507 ~~~~~~~~~~~~vIg~VG-RL~~~---KG~~~LI~A~a~l~~~~p~-------~~LvIvG~G~~~----~~L~~l~~~lg 571 (694)
T PRK15179 507 AQFDARTSDARFTVGTVM-RVDDN---KRPFLWVEAAQRFAASHPK-------VRFIMVGGGPLL----ESVREFAQRLG 571 (694)
T ss_pred HhhccccCCCCeEEEEEE-eCCcc---CCHHHHHHHHHHHHHHCcC-------eEEEEEccCcch----HHHHHHHHHcC
Confidence 11 22345567899999 89998 9999999999999988888 9999999 7765 78899999999
Q ss_pred CCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCC--HHH
Q 004092 403 YPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKEN--IKA 480 (774)
Q Consensus 403 L~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d--~e~ 480 (774)
+.+ +|.|+|+++++..+|++||++|+||.+| |||++++|||+||+|||+|+.+|++|+|.++.+|++++++| +++
T Consensus 572 L~~-~V~flG~~~dv~~ll~aaDv~VlpS~~E--gfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~ 648 (694)
T PRK15179 572 MGE-RILFTGLSRRVGYWLTQFNAFLLLSRFE--GLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPD 648 (694)
T ss_pred CCC-cEEEcCCcchHHHHHHhcCEEEeccccc--cchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHH
Confidence 998 9999999999999999999999999998 89999999999999999999999999999999999999876 468
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 004092 481 LTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (774)
Q Consensus 481 La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e 526 (774)
++++|.+++.+ ......+++++++.+ ++|+|+.++++|.++|+
T Consensus 649 La~aL~~ll~~---l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 649 VAEALARIHDM---CAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHhC---hhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999887 656667889999999 68999999999999995
No 6
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=9.5e-34 Score=321.99 Aligned_cols=353 Identities=15% Similarity=0.126 Sum_probs=250.6
Q ss_pred CCCCChHHHHHHHHHHHHHHcCC--eEEEEEcCCCc------chhhhh--hcCccEEEcccc------------------
Q 004092 153 DLLIDPQQLQMVTIAIALREIGY--AIQVYSLEDGR------AHEVWR--NIGVPVAILQTG------------------ 204 (774)
Q Consensus 153 ~L~~GG~e~~v~~Lak~L~~~G~--eV~V~t~~~~~------~~~~~~--~~gi~i~~l~~~------------------ 204 (774)
+...||++.++.+|++.|.++|| +|+|+|..... ....+. ..|+++..++..
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELA 101 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHH
Confidence 45579999999999999999997 99999963211 111111 245565555431
Q ss_pred hhHHHHhhh--cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhh---------hh--hhhHHHHHH
Q 004092 205 REKASFVNW--LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYA---------SS--GQLELLNDW 271 (774)
Q Consensus 205 ~~l~~~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~---------~~--~~~~li~~~ 271 (774)
..+...++. .+||+||+|+... ..+..++.+ ..++|+|+|.|+...... ..+. .. .....+...
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~~-~~~~~~~~~-~~~~p~V~t~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYADA-GYVGARLSR-LLGVPLIFTGHSLGREKR-RRLLAAGLKPQQIEKQYNISRRIEAE 178 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchhH-HHHHHHHHH-HhCCCEEEecccccchhh-hhcccCCCChhhhhhhcchHHHHHHH
Confidence 122333443 2699999998765 355555543 567899999996321100 0000 00 001111223
Q ss_pred HHHHHhccEEEccCCc-chh---hcccCCCCCEEEeCCCCCCcccccccCchh-hH---HHHHHhCCCCCCEEEEEEecc
Q 004092 272 KKVFNRATVVVFPDYV-LPM---MYSAFDAGNYYVIPGSPAKAWEADTNMDLY-ND---TVRVKMGFKPDDLVIAIVGTQ 343 (774)
Q Consensus 272 ~~~~~~a~~vv~ps~~-~~~---i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~-k~---~lR~~lgl~~~~~vIl~vGsr 343 (774)
+..+..++.++..+.. ... .+..++.+++.+|| +|+|...+.+..... .. ..+..++..+++++++++| |
T Consensus 179 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIp-nGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG-r 256 (439)
T TIGR02472 179 EETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIP-PGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAIS-R 256 (439)
T ss_pred HHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEEC-CCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEc-C
Confidence 3456677776665433 111 12356678899999 488886554332211 11 1223455667778999999 8
Q ss_pred cccccccccHHHHHHHHHHchhhcccCCCCCCCeEE-EEEe-CCCCCc-------hHHHHHHHHHHcCCCCccEEEccCc
Q 004092 344 FMYRGLWLEHALILRALLPLFSEVSVENESNSPIKV-MILS-GDSTSN-------YSVVIEAIAHNLHYPLGVVKHMAAE 414 (774)
Q Consensus 344 l~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~L-vIvG-G~~~e~-------Y~~~L~~la~~lgL~~~~V~flG~~ 414 (774)
+.+. ||++.+++|++.+...... .++ +|+| |+..+. +.+.++.++.++++.+ +|.|+|++
T Consensus 257 l~~~---Kg~~~li~A~~~l~~~~~~-------~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~V~f~g~~ 325 (439)
T TIGR02472 257 PDRR---KNIPSLVEAYGRSPKLQEM-------ANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYG-KVAYPKHH 325 (439)
T ss_pred Cccc---CCHHHHHHHHHhChhhhhh-------ccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCc-eEEecCCC
Confidence 8988 9999999999875322111 233 3567 654432 2344667788899998 99999964
Q ss_pred --ccHHHHHHHc----CEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHH
Q 004092 415 --GDVDSVLNTA----DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQV 488 (774)
Q Consensus 415 --~dl~~~l~aa----DI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~L 488 (774)
+++..+|+.| |+||+||..| |||++++||||||+|||+|+.+|++|++.++.+|++++++|+++|+++|.++
T Consensus 326 ~~~~~~~~~~~a~~~~Dv~v~pS~~E--~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~l 403 (439)
T TIGR02472 326 RPDDVPELYRLAARSRGIFVNPALTE--PFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDA 403 (439)
T ss_pred CHHHHHHHHHHHhhcCCEEecccccC--CcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHH
Confidence 8899999987 9999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 004092 489 ITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (774)
Q Consensus 489 l~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e 526 (774)
++| ++.+++|+++|++.+ ++|+|+.++++|.++++
T Consensus 404 l~~---~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 404 LSD---SSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999 999999999999998 67999999999998863
No 7
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.5e-33 Score=316.03 Aligned_cols=346 Identities=12% Similarity=0.118 Sum_probs=255.6
Q ss_pred eEEEEecCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhhhhhcCccEEEcccc---------------hhH
Q 004092 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAILQTG---------------REK 207 (774)
Q Consensus 146 rialV~~~L--~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~-~~~~~~~gi~i~~l~~~---------------~~l 207 (774)
||++|.+.. ..||+++++..+++.|.++||+|.|++...+.. ...+...++++..++.. ..+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l 80 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLL 80 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHH
Confidence 467776644 469999999999999999999999999754321 11222334444433221 123
Q ss_pred HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc
Q 004092 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (774)
Q Consensus 208 ~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~ 287 (774)
...+...+||+||+|++........++..+..++|+|++.|+..... ......... ..+..+..++.+++.+..
T Consensus 81 ~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~---~~~~~~~~~---~~~~~~~~~d~ii~~s~~ 154 (398)
T cd03796 81 RNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFA---DASSIHTNK---LLRFSLADVDHVICVSHT 154 (398)
T ss_pred HHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEeccccccc---chhhHHhhH---HHHHhhccCCEEEEecHh
Confidence 34556689999999997653233333333466799999999632110 000000011 112234566777766655
Q ss_pred ch---hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHch
Q 004092 288 LP---MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLF 364 (774)
Q Consensus 288 ~~---~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~ 364 (774)
.. .....++.+++.+|| +|+|...+.+... ..+++.++++++| ++.+. ||++.+++|+..+.
T Consensus 155 ~~~~~~~~~~~~~~k~~vi~-ngvd~~~f~~~~~----------~~~~~~~~i~~~g-rl~~~---Kg~~~li~a~~~l~ 219 (398)
T cd03796 155 SKENTVLRASLDPERVSVIP-NAVDSSDFTPDPS----------KRDNDKITIVVIS-RLVYR---KGIDLLVGIIPEIC 219 (398)
T ss_pred HhhHHHHHhCCChhhEEEEc-CccCHHHcCCCcc----------cCCCCceEEEEEe-ccchh---cCHHHHHHHHHHHH
Confidence 32 233456667899999 4788643322111 1245678999999 88888 99999999999998
Q ss_pred hhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHH
Q 004092 365 SEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (774)
Q Consensus 365 ~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~ 441 (774)
++.|+ ++|+|+| |+.. +.++++++++++.+ +|.|+|++ +++..+|++||++|+||..| |||++
T Consensus 220 ~~~~~-------~~l~i~G~g~~~----~~l~~~~~~~~l~~-~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E--~~g~~ 285 (398)
T cd03796 220 KKHPN-------VRFIIGGDGPKR----ILLEEMREKYNLQD-RVELLGAVPHERVRDVLVQGHIFLNTSLTE--AFCIA 285 (398)
T ss_pred hhCCC-------EEEEEEeCCchH----HHHHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhCCEEEeCChhh--ccCHH
Confidence 88888 9999999 7654 77889999999998 99999986 78999999999999999988 89999
Q ss_pred HHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 004092 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (774)
Q Consensus 442 llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~ 520 (774)
++||||||+|||+|+.+|.+|++.++. +++++ .|+++++++|.+++++ +.....+++++++.+ ++|+|+.++++
T Consensus 286 ~~EAma~G~PVI~s~~gg~~e~i~~~~-~~~~~-~~~~~l~~~l~~~l~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~ 360 (398)
T cd03796 286 IVEAASCGLLVVSTRVGGIPEVLPPDM-ILLAE-PDVESIVRKLEEAISI---LRTGKHDPWSFHNRVKKMYSWEDVAKR 360 (398)
T ss_pred HHHHHHcCCCEEECCCCCchhheeCCc-eeecC-CCHHHHHHHHHHHHhC---hhhhhhHHHHHHHHHHhhCCHHHHHHH
Confidence 999999999999999999999998764 55554 4899999999999998 766667788888877 67999999999
Q ss_pred HHHHHHHHhcC
Q 004092 521 YAMLLENVLKL 531 (774)
Q Consensus 521 y~~L~e~ll~~ 531 (774)
|.++|+.++..
T Consensus 361 ~~~~y~~l~~~ 371 (398)
T cd03796 361 TEKVYDRILQT 371 (398)
T ss_pred HHHHHHHHhcC
Confidence 99999998763
No 8
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=3.8e-33 Score=314.02 Aligned_cols=363 Identities=12% Similarity=0.077 Sum_probs=262.2
Q ss_pred CeEEEEecCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc-c-----------hhhhhhcCccEEEcccch-----
Q 004092 145 PQLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGR-A-----------HEVWRNIGVPVAILQTGR----- 205 (774)
Q Consensus 145 ~rialV~~~L--~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~-~-----------~~~~~~~gi~i~~l~~~~----- 205 (774)
+||+++.... ..||.+.++..+++.|.++||+|+|+|..+.. . .......++++..++...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 4788887654 35999999999999999999999999975310 0 001112355555443210
Q ss_pred ---hHH-----------HHhh--hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHH-Hhh-hhhhhHH
Q 004092 206 ---EKA-----------SFVN--WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRAR-NYA-SSGQLEL 267 (774)
Q Consensus 206 ---~l~-----------~~i~--~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~-k~~-~~~~~~l 267 (774)
.+. .+++ ..+||+||+|++........+...+..++|+|+++|+........ ... ......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~ 160 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVARL 160 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHHH
Confidence 000 0111 168999999987653233333223456789999999632110000 000 0011111
Q ss_pred HH-HHHHHHHhccEEEccCCcchh--hcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEeccc
Q 004092 268 LN-DWKKVFNRATVVVFPDYVLPM--MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQF 344 (774)
Q Consensus 268 i~-~~~~~~~~a~~vv~ps~~~~~--i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl 344 (774)
.. ..+..+..++.+++.+..... ...+.+..++.+|| +|+|...+.+.........++++++++++++++|+| ++
T Consensus 161 ~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~-ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-~l 238 (412)
T PRK10307 161 ATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFP-NWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSG-NI 238 (412)
T ss_pred HHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEEC-CCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcC-cc
Confidence 11 233356678877777665322 22345667899999 488874443322222345788899998889999999 88
Q ss_pred ccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHH
Q 004092 345 MYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVL 421 (774)
Q Consensus 345 ~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l 421 (774)
.+. ||++.+++|++.+. +.++ ++|+|+| |+.. +.++++++++++++ |.|+|++ +++..+|
T Consensus 239 ~~~---kg~~~li~a~~~l~-~~~~-------~~l~ivG~g~~~----~~l~~~~~~~~l~~--v~f~G~~~~~~~~~~~ 301 (412)
T PRK10307 239 GEK---QGLELVIDAARRLR-DRPD-------LIFVICGQGGGK----ARLEKMAQCRGLPN--VHFLPLQPYDRLPALL 301 (412)
T ss_pred ccc---cCHHHHHHHHHHhc-cCCC-------eEEEEECCChhH----HHHHHHHHHcCCCc--eEEeCCCCHHHHHHHH
Confidence 887 99999999999885 4566 9999999 8765 77889999999864 9999976 7899999
Q ss_pred HHcCEEEEcCccCcCC--ccHHHHHHHHcCCCEEEcCCcc--cccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHH
Q 004092 422 NTADVVIYGSFLEEQT--FPEILVKALCFRKPIIAPDLSN--IRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPF 497 (774)
Q Consensus 422 ~aaDI~V~PS~~E~qG--fp~~llEAMA~G~PVIatd~gg--i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~ 497 (774)
++||++|+||..|..+ +|.+++||||||+|||+|+.+| +.+++. .+|++++++|+++++++|.++++| ++.
T Consensus 302 ~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~---~~~ 376 (412)
T PRK10307 302 KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQ---ALL 376 (412)
T ss_pred HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhC---HHH
Confidence 9999999999887311 6889999999999999999876 457776 489999999999999999999999 999
Q ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhcC
Q 004092 498 ARNIASIGRRSV-KNLMALETIEGYAMLLENVLKL 531 (774)
Q Consensus 498 r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~ll~~ 531 (774)
+++|+++|++.+ ++|+|+.++++|.++|++++..
T Consensus 377 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 377 RPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999 5799999999999999998753
No 9
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=3.4e-33 Score=314.26 Aligned_cols=343 Identities=16% Similarity=0.201 Sum_probs=254.6
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch---hhhh--hcCccEEEcc-----------------
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH---EVWR--NIGVPVAILQ----------------- 202 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~---~~~~--~~gi~i~~l~----------------- 202 (774)
++|+++++.+- .-.|+.+.+-..+|.++|++|++++...+... .... ...-++..++
T Consensus 1 m~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 37888888765 67799999999999999999999998553211 1111 1111111110
Q ss_pred --------------cch---hH---------HHHhhhcCccEEEEcCCchhHHHHHHHhCC-CCCCCEEEEEcCchhhhh
Q 004092 203 --------------TGR---EK---------ASFVNWLNYDGILVNSLEAKVVISNIMQEP-FKSLPLVWTIHEGTLATR 255 (774)
Q Consensus 203 --------------~~~---~l---------~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~-~~~ipvI~tiHg~~l~~~ 255 (774)
... .. ...++..+||+||+|+...+ .....+... ..+.|+++|+|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~-~~~~~~~~~~~~~~~~~~t~Hg~d~~~~ 158 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAG-VTAAKLRELGVLRGKIATIFHGIDISSR 158 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHH-HHHHHHHHhCCCCCCeEEEEcccccccc
Confidence 000 00 11124468999999998764 444433221 234577889998543311
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch--hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCC
Q 004092 256 ARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPD 333 (774)
Q Consensus 256 ~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~--~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~ 333 (774)
..... .-......+..++.++..+.... +...+++.+++.+|| +|+|...+..... ....+
T Consensus 159 --~~~~~----~~~~~~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~vi~-nGvd~~~f~~~~~----------~~~~~ 221 (406)
T PRK15427 159 --EVLNH----YTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAVSR-MGVDMTRFSPRPV----------KAPAT 221 (406)
T ss_pred --hhhhh----hhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEEcC-CCCCHHHcCCCcc----------ccCCC
Confidence 11100 01123345567777766665422 222355667899998 4888744332111 11235
Q ss_pred CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 334 ~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
.+.++++| ++.+. ||++.+++|++.+.+++++ ++++|+| |+.. +.++++++++++.+ +|.|+|
T Consensus 222 ~~~il~vG-rl~~~---Kg~~~ll~a~~~l~~~~~~-------~~l~ivG~G~~~----~~l~~~~~~~~l~~-~V~~~G 285 (406)
T PRK15427 222 PLEIISVA-RLTEK---KGLHVAIEACRQLKEQGVA-------FRYRILGIGPWE----RRLRTLIEQYQLED-VVEMPG 285 (406)
T ss_pred CeEEEEEe-Ccchh---cCHHHHHHHHHHHHhhCCC-------EEEEEEECchhH----HHHHHHHHHcCCCC-eEEEeC
Confidence 56899999 88888 9999999999999888877 9999999 8765 78889999999998 999999
Q ss_pred Cc--ccHHHHHHHcCEEEEcCcc------CcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHH
Q 004092 413 AE--GDVDSVLNTADVVIYGSFL------EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHI 484 (774)
Q Consensus 413 ~~--~dl~~~l~aaDI~V~PS~~------E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~a 484 (774)
++ +++.++|+.||++|+||.. | |+|++++||||||+|||+|+.+|++|+|.++.+|++++++|+++++++
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~E--g~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~a 363 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDME--GIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDAQALAQR 363 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCcc--CccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHHH
Confidence 87 7899999999999999974 6 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 004092 485 ILQVIT-NGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (774)
Q Consensus 485 I~~Ll~-d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~ 527 (774)
|.++++ | ++.+++|+++|++.+ ++|+|+.+++++.++|++
T Consensus 364 i~~l~~~d---~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 364 LAAFSQLD---TDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHhCC---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999999 9 889999999999999 679999999999999976
No 10
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=7.3e-33 Score=302.62 Aligned_cols=334 Identities=18% Similarity=0.134 Sum_probs=254.4
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc-----------hhHHHHhhhcCcc
Q 004092 149 LVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG-----------REKASFVNWLNYD 217 (774)
Q Consensus 149 lV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~-----------~~l~~~i~~~~~D 217 (774)
.+++.+..||+++++.++++.|.++||+|.+++... +........++++..+... ..+...++..+||
T Consensus 2 ~~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (355)
T cd03819 2 QVLPALESGGVERGTLELARALVERGHRSLVASAGG-RLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVD 80 (355)
T ss_pred ccchhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCC-chHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCC
Confidence 356778889999999999999999999999998644 3333344445544333221 2234456678999
Q ss_pred EEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchh-h--ccc
Q 004092 218 GILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM-M--YSA 294 (774)
Q Consensus 218 IIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~-i--~~~ 294 (774)
+||+|+.... ....+.. +..++|+|+++|+...... .+...+..++.+.+.+..... . ..+
T Consensus 81 ii~~~~~~~~-~~~~~~~-~~~~~~~i~~~h~~~~~~~--------------~~~~~~~~~~~vi~~s~~~~~~~~~~~~ 144 (355)
T cd03819 81 IVHARSRAPA-WSAYLAA-RRTRPPFVTTVHGFYSVNF--------------RYNAIMARGDRVIAVSNFIADHIRENYG 144 (355)
T ss_pred EEEECCCchh-HHHHHHH-HhcCCCEEEEeCCchhhHH--------------HHHHHHHhcCEEEEeCHHHHHHHHHhcC
Confidence 9999987652 4444333 3557999999997432210 112223455655555444221 1 234
Q ss_pred CCCCCEEEeCCCCCCcccccccCchh--hHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 004092 295 FDAGNYYVIPGSPAKAWEADTNMDLY--NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (774)
Q Consensus 295 v~~~ki~vIpg~gvd~~~~~~~~~~~--k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~ 372 (774)
++..++.+||+ |+|...+....... ....+++++.+++.++++++| ++.+. ||++.+++|+..+.+..++
T Consensus 145 ~~~~k~~~i~n-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-r~~~~---Kg~~~li~~~~~l~~~~~~--- 216 (355)
T cd03819 145 VDPDRIRVIPR-GVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPG-RLTRW---KGQEVFIEALARLKKDDPD--- 216 (355)
T ss_pred CChhhEEEecC-CccccccCccccchHHHHHHHHHcCCCCCceEEEEee-ccccc---cCHHHHHHHHHHHHhcCCC---
Confidence 55678899984 77764443322211 223677888888888999999 88887 9999999999999887667
Q ss_pred CCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcC-ccCcCCccHHHHHHHHcCC
Q 004092 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS-FLEEQTFPEILVKALCFRK 450 (774)
Q Consensus 373 ~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS-~~E~qGfp~~llEAMA~G~ 450 (774)
++++|+| |+..+.+.+.+++.+.++++.+ +|.|+|+.+++..+|++||++++|| ..| |+|++++||||||+
T Consensus 217 ----~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~l~~ad~~i~ps~~~e--~~~~~l~EA~a~G~ 289 (355)
T cd03819 217 ----VHLLIVGDAQGRRFYYAELLELIKRLGLQD-RVTFVGHCSDMPAAYALADIVVSASTEPE--AFGRTAVEAQAMGR 289 (355)
T ss_pred ----eEEEEEECCcccchHHHHHHHHHHHcCCcc-eEEEcCCcccHHHHHHhCCEEEecCCCCC--CCchHHHHHHhcCC
Confidence 9999999 7766667777888889889987 8999999999999999999999999 666 89999999999999
Q ss_pred CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHH-HhcCHHHH
Q 004092 451 PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI-TNGKISPFARNIASIGRRSV-KNLMALET 517 (774)
Q Consensus 451 PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll-~d~~~~~~r~~m~~~ar~~a-k~fs~~~~ 517 (774)
|||+++.++..|++.++.+|++++++|+++++++|..++ .+ ++.+.+|+++|++.+ ++|++++|
T Consensus 290 PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 290 PVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLL---PEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred CEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHhhhhccC
Confidence 999999999999999998999999999999999997555 57 888999999999999 57998754
No 11
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=8.9e-33 Score=306.75 Aligned_cols=347 Identities=14% Similarity=0.182 Sum_probs=254.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh----hh-c-CccEEEcccch--hH----HHH---
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW----RN-I-GVPVAILQTGR--EK----ASF--- 210 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~----~~-~-gi~i~~l~~~~--~l----~~~--- 210 (774)
||+++.+.+..||.++++.++++.|.+.||+|++++..+.+..... .. . +..+ .++... .+ ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI-ELSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC-CCCHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999988664321110 01 1 2222 121111 00 111
Q ss_pred -hhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch
Q 004092 211 -VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP 289 (774)
Q Consensus 211 -i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~ 289 (774)
+...+||+||+|++... .+..+. ...++|+|++.|+..... . .. +.......+..++.+++++..
T Consensus 80 ~~~~~~~Dvv~~h~~~~~-~~~~~~--~~~~~~~i~~~H~~~~~~-~-~~-------~~~~~~~~~~~~d~~i~~~~~-- 145 (372)
T cd03792 80 PLLDLDADVVVIHDPQPL-ALPLFK--KKRGRPWIWRCHIDLSSP-N-RR-------VWDFLQPYIEDYDAAVFHLPE-- 145 (372)
T ss_pred ccccCCCCEEEECCCCch-hHHHhh--hcCCCeEEEEeeeecCCC-c-HH-------HHHHHHHHHHhCCEEeecHHH--
Confidence 22458999999988752 332222 234789999999633211 0 00 001112233455655555422
Q ss_pred hhcccCCCCCEEEeCCCCCCccccc--ccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 004092 290 MMYSAFDAGNYYVIPGSPAKAWEAD--TNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (774)
Q Consensus 290 ~i~~~v~~~ki~vIpg~gvd~~~~~--~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~ 367 (774)
.....+...++ +|| +++|..... .+.+......++++++++++++++++| |+.+. ||++.+++|++.+.+..
T Consensus 146 ~~~~~~~~~~~-vip-ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vg-rl~~~---Kg~~~ll~a~~~l~~~~ 219 (372)
T cd03792 146 YVPPQVPPRKV-IIP-PSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVS-RFDPW---KDPFGVIDAYRKVKERV 219 (372)
T ss_pred hcCCCCCCceE-EeC-CCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEe-ccccc---cCcHHHHHHHHHHHhhC
Confidence 11223344444 888 478863211 222223456788899998999999999 99998 99999999999998877
Q ss_pred ccCCCCCCCeEEEEEe-CCCC-CchHHHHHHHHHHcCCCCccEEEccCc----ccHHHHHHHcCEEEEcCccCcCCccHH
Q 004092 368 SVENESNSPIKVMILS-GDST-SNYSVVIEAIAHNLHYPLGVVKHMAAE----GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (774)
Q Consensus 368 p~~~~~~~~v~LvIvG-G~~~-e~Y~~~L~~la~~lgL~~~~V~flG~~----~dl~~~l~aaDI~V~PS~~E~qGfp~~ 441 (774)
|+ ++|+|+| |+.. +.+.+.++++.+..++.+ +|.|+|.. +++..+|++||++++||..| |||++
T Consensus 220 ~~-------~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~E--g~g~~ 289 (372)
T cd03792 220 PD-------PQLVLVGSGATDDPEGWIVYEEVLEYAEGDP-DIHVLTLPPVSDLEVNALQRASTVVLQKSIRE--GFGLT 289 (372)
T ss_pred CC-------CEEEEEeCCCCCCchhHHHHHHHHHHhCCCC-CeEEEecCCCCHHHHHHHHHhCeEEEeCCCcc--CCCHH
Confidence 77 9999999 7653 233444566666678877 89999864 78899999999999999999 89999
Q ss_pred HHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 004092 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (774)
Q Consensus 442 llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~ 520 (774)
++||||||+|||+|+.+|+.+++.++.+|++++ ++++++++|.+++++ ++.+++|+++|++.+ ++|+|+.++++
T Consensus 290 ~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~--~~~~~a~~i~~ll~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 364 (372)
T cd03792 290 VTEALWKGKPVIAGPVGGIPLQIEDGETGFLVD--TVEEAAVRILYLLRD---PELRRKMGANAREHVRENFLITRHLKD 364 (372)
T ss_pred HHHHHHcCCCEEEcCCCCchhhcccCCceEEeC--CcHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 999999999999999999999999999999987 567899999999999 999999999999998 68999999999
Q ss_pred HHHHHHHH
Q 004092 521 YAMLLENV 528 (774)
Q Consensus 521 y~~L~e~l 528 (774)
|.++|+++
T Consensus 365 ~~~~~~~~ 372 (372)
T cd03792 365 YLYLISKL 372 (372)
T ss_pred HHHHHHhC
Confidence 99999863
No 12
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=1.4e-32 Score=297.03 Aligned_cols=350 Identities=20% Similarity=0.311 Sum_probs=264.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc-chhhhhhcCccEEEcccc---------hhHHHHhhhcC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR-AHEVWRNIGVPVAILQTG---------REKASFVNWLN 215 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~-~~~~~~~~gi~i~~l~~~---------~~l~~~i~~~~ 215 (774)
||+++++.+..||+++++..+++.|.+.||+|.+++..... ........++++..+... ..+...++..+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLR 80 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999999875532 223334445555444322 23455567789
Q ss_pred ccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch--hhcc
Q 004092 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP--MMYS 293 (774)
Q Consensus 216 ~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~--~i~~ 293 (774)
||+||++..... ....+......++|++++.|+...... ..... ............++.+.+.+.... ....
T Consensus 81 ~div~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 154 (365)
T cd03807 81 PDVVHTWMYHAD-LYGGLAARLAGVPPVIWGIRHSDLDLG--KKSTR---LVARLRRLLSSFIPLIVANSAAAAEYHQAI 154 (365)
T ss_pred CCEEEecccccc-HHHHHHHHhcCCCcEEEEecCCccccc--chhHh---HHHHHHHHhccccCeEEeccHHHHHHHHHc
Confidence 999999876652 444333332367899999997432211 00000 001111222334444444444322 1222
Q ss_pred cCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCC
Q 004092 294 AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENES 373 (774)
Q Consensus 294 ~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~ 373 (774)
+++..++.++|+ |+|...+..... .....+++++++++.++++++| ++.+. ||++.+++|+..+.+++++
T Consensus 155 ~~~~~~~~vi~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~~~~~~---- 224 (365)
T cd03807 155 GYPPKKIVVIPN-GVDTERFSPDLD-ARARLREELGLPEDTFLIGIVA-RLHPQ---KDHATLLRAAALLLKKFPN---- 224 (365)
T ss_pred CCChhheeEeCC-CcCHHhcCCccc-chHHHHHhcCCCCCCeEEEEec-ccchh---cCHHHHHHHHHHHHHhCCC----
Confidence 556678888884 777643322211 2445667889988899999999 88887 9999999999999888877
Q ss_pred CCCeEEEEEe-CCCCCchHHHHHHHHH-HcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCC
Q 004092 374 NSPIKVMILS-GDSTSNYSVVIEAIAH-NLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (774)
Q Consensus 374 ~~~v~LvIvG-G~~~e~Y~~~L~~la~-~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~P 451 (774)
++++++| |+.. ..++.... ++++.+ +|.+.|..+++..+|+.||++++||..| |+|++++|||+||+|
T Consensus 225 ---~~l~i~G~~~~~----~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~e--~~~~~~~Ea~a~g~P 294 (365)
T cd03807 225 ---ARLLLVGDGPDR----ANLELLALKELGLED-KVILLGERSDVPALLNALDVFVLSSLSE--GFPNVLLEAMACGLP 294 (365)
T ss_pred ---eEEEEecCCcch----hHHHHHHHHhcCCCc-eEEEccccccHHHHHHhCCEEEeCCccc--cCCcHHHHHHhcCCC
Confidence 9999999 7655 44445555 788888 9999999999999999999999999997 899999999999999
Q ss_pred EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 004092 452 IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (774)
Q Consensus 452 VIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e 526 (774)
||+++.++..|++.+ +|++++++|+++++++|.+++++ ++.+.++++++++.+ ++|+|++++++|.++|+
T Consensus 295 vI~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 295 VVATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLAD---PALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred EEEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999988 79999999999999999999999 999999999999999 57999999999999874
No 13
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.3e-32 Score=305.81 Aligned_cols=355 Identities=15% Similarity=0.159 Sum_probs=259.6
Q ss_pred CeEEEEecCCC---CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchh-------H-------
Q 004092 145 PQLALVFPDLL---IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGRE-------K------- 207 (774)
Q Consensus 145 ~rialV~~~L~---~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~-------l------- 207 (774)
++|++|..... .||++.++.++++.|.+. ++|+|++...+. ....++++........ +
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR----FDSEGLTVKGYRPWSELKEANKALGTFSVDL 75 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch----hcCCCeEEEEecChhhccchhhhhhhhhHHH
Confidence 46888877664 399999999999999987 788888775432 1122334332221110 0
Q ss_pred HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHH-HhhhhhhhHHHHHHHHHHHhccEEEccCC
Q 004092 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRAR-NYASSGQLELLNDWKKVFNRATVVVFPDY 286 (774)
Q Consensus 208 ~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~-k~~~~~~~~li~~~~~~~~~a~~vv~ps~ 286 (774)
.......++|+||+|++... ....+. .+..++|+|+++|+........ ..........-...+..+..++.+++.+.
T Consensus 76 ~~~~~~~~~divh~~~~~~~-~~~~~~-~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~ 153 (388)
T TIGR02149 76 AMANDPVDADVVHSHTWYTF-LAGHLA-KKLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSG 153 (388)
T ss_pred HHhhCCCCCCeEeecchhhh-hHHHHH-HHhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccH
Confidence 11112247999999987663 333333 3456899999999732111000 00000000001122335667787777766
Q ss_pred cchh----hcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHH
Q 004092 287 VLPM----MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLP 362 (774)
Q Consensus 287 ~~~~----i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~ 362 (774)
.... .+.+++..++.+||+ |+|...+. +......+.+++++++.++++++| ++.+. ||++.+++|++.
T Consensus 154 ~~~~~~~~~~~~~~~~~i~vi~n-g~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~G-rl~~~---Kg~~~li~a~~~ 225 (388)
T TIGR02149 154 GMREDILKYYPDLDPEKVHVIYN-GIDTKEYK---PDDGNVVLDRYGIDRSRPYILFVG-RITRQ---KGVPHLLDAVHY 225 (388)
T ss_pred HHHHHHHHHcCCCCcceEEEecC-CCChhhcC---CCchHHHHHHhCCCCCceEEEEEc-ccccc---cCHHHHHHHHHH
Confidence 5321 122456678899994 77763332 223456788899988889999999 88888 999999999998
Q ss_pred chhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc-Cc--ccHHHHHHHcCEEEEcCccCcCCc
Q 004092 363 LFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDSVLNTADVVIYGSFLEEQTF 438 (774)
Q Consensus 363 L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG-~~--~dl~~~l~aaDI~V~PS~~E~qGf 438 (774)
+.. + ++++++| |+...++.+.+++.++.++....+|.+++ .. +++..+|++||++|+||..| ++
T Consensus 226 l~~---~-------~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e--~~ 293 (388)
T TIGR02149 226 IPK---D-------VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYE--PL 293 (388)
T ss_pred Hhh---c-------CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccC--CC
Confidence 853 3 7888888 67666677788888887776433577654 43 78999999999999999998 89
Q ss_pred cHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCH------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hh
Q 004092 439 PEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENI------KALTHIILQVITNGKISPFARNIASIGRRSV-KN 511 (774)
Q Consensus 439 p~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~------e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~ 511 (774)
|++++|||+||+|||+|+.++..|++.++.+|++++++|+ ++++++|.++++| ++.+++|++++++.+ ++
T Consensus 294 g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~ 370 (388)
T TIGR02149 294 GIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD---PELAKKMGIAGRKRAEEE 370 (388)
T ss_pred ChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 9999999999999 999999999999998 67
Q ss_pred cCHHHHHHHHHHHHHHHh
Q 004092 512 LMALETIEGYAMLLENVL 529 (774)
Q Consensus 512 fs~~~~a~~y~~L~e~ll 529 (774)
|+|+.++++|.++|++++
T Consensus 371 ~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 371 FSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred CCHHHHHHHHHHHHHhhC
Confidence 999999999999999863
No 14
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1.4e-32 Score=300.38 Aligned_cols=344 Identities=19% Similarity=0.244 Sum_probs=252.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEccc----------chhHHHHhhhcC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT----------GREKASFVNWLN 215 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~----------~~~l~~~i~~~~ 215 (774)
+|+++++++..||++.++.++++.|.+.||+|++++...+..........+. ..+.. ...+..+++..+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATII-LNLNMSKNPLSFLLALWKLRKILRQFK 79 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccce-EEecccccchhhHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999999999999987554322222111111 01111 112344566789
Q ss_pred ccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc-c--hhhc
Q 004092 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-L--PMMY 292 (774)
Q Consensus 216 ~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~-~--~~i~ 292 (774)
||+||+|..... .+..+......++|++++.|+............ +.....++.....+.. . ....
T Consensus 80 pdiv~~~~~~~~-~~~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~~~~~~~~~ 148 (360)
T cd04951 80 PDVVHAHMFHAN-IFARLLRLFLPSPPLICTAHSKNEGGRLRMLAY----------RLTDFLSDLTTNVSKEALDYFIAS 148 (360)
T ss_pred CCEEEEcccchH-HHHHHHHhhCCCCcEEEEeeccCchhHHHHHHH----------HHHhhccCceEEEcHHHHHHHHhc
Confidence 999999987763 555554443557899999996432211111111 1111112211111111 1 1111
Q ss_pred ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 004092 293 SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (774)
Q Consensus 293 ~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~ 372 (774)
..+..+++.+||+ |+|...+... .......++++++.+++++++++| ++.+. ||++.+++|+..+.+++|+
T Consensus 149 ~~~~~~~~~~i~n-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g-~~~~~---kg~~~li~a~~~l~~~~~~--- 219 (360)
T cd04951 149 KAFNANKSFVVYN-GIDTDRFRKD-PARRLKIRNALGVKNDTFVILAVG-RLVEA---KDYPNLLKAFAKLLSDYLD--- 219 (360)
T ss_pred cCCCcccEEEEcc-ccchhhcCcc-hHHHHHHHHHcCcCCCCEEEEEEe-eCchh---cCcHHHHHHHHHHHhhCCC---
Confidence 2245678899994 7776333222 122456788889988899999999 77887 9999999999999888887
Q ss_pred CCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCC
Q 004092 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (774)
Q Consensus 373 ~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~P 451 (774)
++|+|+| |+.. +.+++.++++++.+ +|.|+|+.+++..+|+.||++|+||..| |+|++++|||++|+|
T Consensus 220 ----~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~s~~e--~~~~~~~Ea~a~G~P 288 (360)
T cd04951 220 ----IKLLIAGDGPLR----ATLERLIKALGLSN-RVKLLGLRDDIAAYYNAADLFVLSSAWE--GFGLVVAEAMACELP 288 (360)
T ss_pred ----eEEEEEcCCCcH----HHHHHHHHhcCCCC-cEEEecccccHHHHHHhhceEEeccccc--CCChHHHHHHHcCCC
Confidence 9999999 7765 67788888888887 8999999999999999999999999998 899999999999999
Q ss_pred EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 004092 452 IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (774)
Q Consensus 452 VIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e 526 (774)
||+++.++..|++.+ +|++++++|+++++++|.+++++. +..+..++++ +..+ ++|+|+.++++|.++|+
T Consensus 289 vI~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~--~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 289 VVATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMS--GEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EEEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCC--HHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 999999999999987 799999999999999999999650 4455566666 6666 78999999999999986
No 15
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=2.2e-32 Score=304.36 Aligned_cols=351 Identities=16% Similarity=0.181 Sum_probs=249.3
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchh--hhhhcCccEEEccc------chh---H------
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE--VWRNIGVPVAILQT------GRE---K------ 207 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~--~~~~~gi~i~~l~~------~~~---l------ 207 (774)
++|+++.+++..||+++++..+|+.|.++||+|+|+|...+.... .....++.+..... ... +
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 479999999999999999999999999999999999975433211 11111132222110 000 0
Q ss_pred -H-----HHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhH-HHhhhhhhhHHHH-HHHHHHHhcc
Q 004092 208 -A-----SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA-RNYASSGQLELLN-DWKKVFNRAT 279 (774)
Q Consensus 208 -~-----~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~-~k~~~~~~~~li~-~~~~~~~~a~ 279 (774)
. ......++|+||+++.... . ..+. . ..+.|+|+++|........ ...........+. .....+..++
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~-~-~~~~-~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad 156 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSAC-V-PLLK-L-FSPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMAD 156 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchH-H-HHHH-H-hcCCcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCce
Confidence 0 0234479999999876652 2 2221 1 2237999999952211000 0011111111111 1223566777
Q ss_pred EEEccCCcchh-h---cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHH
Q 004092 280 VVVFPDYVLPM-M---YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (774)
Q Consensus 280 ~vv~ps~~~~~-i---~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~l 355 (774)
.+++++..... . +......++.+|+ +++|...+..... ...+......++.++++++| ++.+. ||++.
T Consensus 157 ~ii~~s~~~~~~~~~~~~~~~~~~~~vi~-n~vd~~~~~~~~~---~~~~~~~~~~~~~~~i~~~g-rl~~~---Kg~~~ 228 (392)
T cd03805 157 KIVVNSNFTASVFKKTFPSLAKNPREVVY-PCVDTDSFESTSE---DPDPGLLIPKSGKKTFLSIN-RFERK---KNIAL 228 (392)
T ss_pred EEEEcChhHHHHHHHHhcccccCCcceeC-CCcCHHHcCcccc---cccccccccCCCceEEEEEe-eeccc---CChHH
Confidence 77776665322 1 1222233345777 3777643322211 11223345567778999999 88888 99999
Q ss_pred HHHHHHHchhhc---ccCCCCCCCeEEEEEe-CCCC----CchHHHHHHHHHH-cCCCCccEEEccCc--ccHHHHHHHc
Q 004092 356 ILRALLPLFSEV---SVENESNSPIKVMILS-GDST----SNYSVVIEAIAHN-LHYPLGVVKHMAAE--GDVDSVLNTA 424 (774)
Q Consensus 356 LLeA~~~L~~~~---p~~~~~~~~v~LvIvG-G~~~----e~Y~~~L~~la~~-lgL~~~~V~flG~~--~dl~~~l~aa 424 (774)
+++|+..+.++. |+ ++|+++| |+.. ..|.+.+++++++ +++.+ +|.|+|++ +++..+|+.|
T Consensus 229 ll~a~~~l~~~~~~~~~-------~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~V~f~g~~~~~~~~~~l~~a 300 (392)
T cd03805 229 AIEAFAILKDKLAEFKN-------VRLVIAGGYDPRVAENVEYLEELQRLAEELLLLED-QVIFLPSISDSQKELLLSSA 300 (392)
T ss_pred HHHHHHHHHhhcccccC-------eEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCc-eEEEeCCCChHHHHHHHhhC
Confidence 999999998876 66 9999999 6542 2466788999998 89998 99999987 6678999999
Q ss_pred CEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 004092 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (774)
Q Consensus 425 DI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ 504 (774)
|++++||..| |||++++||||||+|||+|+.+|..|++.++.+|+++++ |+++++++|.+++++ ++.+++|+++
T Consensus 301 d~~l~~s~~E--~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~---~~~~~~~~~~ 374 (392)
T cd03805 301 RALLYTPSNE--HFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-TPEEFAEAMLKLAND---PDLADRMGAA 374 (392)
T ss_pred eEEEECCCcC--CCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-CHHHHHHHHHHHHhC---hHHHHHHHHH
Confidence 9999999988 899999999999999999999999999999999999976 899999999999999 9999999999
Q ss_pred HHHHH-HhcCHHHHHHHH
Q 004092 505 GRRSV-KNLMALETIEGY 521 (774)
Q Consensus 505 ar~~a-k~fs~~~~a~~y 521 (774)
|++.+ ++|+|+.+++++
T Consensus 375 a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 375 GRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHhcCHHHHhhhC
Confidence 99998 679999998753
No 16
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.2e-32 Score=313.12 Aligned_cols=359 Identities=16% Similarity=0.161 Sum_probs=254.4
Q ss_pred CeEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-------------------hhhcCccEEEc
Q 004092 145 PQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-------------------WRNIGVPVAIL 201 (774)
Q Consensus 145 ~rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~-------------------~~~~gi~i~~l 201 (774)
++|++|.... ..||...++..|+++|+++||+|.|+++..+..... ....|++++.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 4688887753 479999999999999999999999999865432111 01134554433
Q ss_pred cc---------ch---h----------HHHHhhh--cCccEEEEcCCchhHHHHHHHhCC----CCCCCEEEEEcCchhh
Q 004092 202 QT---------GR---E----------KASFVNW--LNYDGILVNSLEAKVVISNIMQEP----FKSLPLVWTIHEGTLA 253 (774)
Q Consensus 202 ~~---------~~---~----------l~~~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~----~~~ipvI~tiHg~~l~ 253 (774)
.. +. . ....+.. .+||+||+|.+.++ .++.++... ..++|+|+|+|+...+
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~-~~~~~l~~~~~~~~~~~~~v~TiH~~~~~ 159 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTG-LIPALLKEKYWRGYPDIKTVFTIHNLAYQ 159 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHH-HHHHHHHHhhhccCCCCCEEEEcCCCcCC
Confidence 21 00 0 0111222 48999999998874 555555432 2468999999984321
Q ss_pred hhHH--Hh--h-----hhhhhH-----HHHHHHHHHHhccEEEccCCcch-hhcc-----------cCCCCCEEEeCCCC
Q 004092 254 TRAR--NY--A-----SSGQLE-----LLNDWKKVFNRATVVVFPDYVLP-MMYS-----------AFDAGNYYVIPGSP 307 (774)
Q Consensus 254 ~~~~--k~--~-----~~~~~~-----li~~~~~~~~~a~~vv~ps~~~~-~i~~-----------~v~~~ki~vIpg~g 307 (774)
.... .. . ....+. .+...+..+..++.++..+.... .+.. .....++.+|| +|
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~-NG 238 (466)
T PRK00654 160 GLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGIL-NG 238 (466)
T ss_pred CcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEec-CC
Confidence 1000 00 0 000000 01222335566776655554421 1111 12356899999 48
Q ss_pred CCcccccccCc----------------hhhHHHHHHhCCCC-CCEEEEEEecccccccccccHHHHHHHHHHchhhcccC
Q 004092 308 AKAWEADTNMD----------------LYNDTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVE 370 (774)
Q Consensus 308 vd~~~~~~~~~----------------~~k~~lR~~lgl~~-~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~ 370 (774)
+|...+.+... ..+..+++++|+++ +.++++++| |+.++ ||++.+++|++.+.++ +
T Consensus 239 id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vG-Rl~~~---KG~~~li~a~~~l~~~--~- 311 (466)
T PRK00654 239 IDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVS-RLTEQ---KGLDLVLEALPELLEQ--G- 311 (466)
T ss_pred CCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEee-ccccc---cChHHHHHHHHHHHhc--C-
Confidence 88765543221 11456788999985 678999999 89998 9999999999998754 4
Q ss_pred CCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEE-EccCccc-HHHHHHHcCEEEEcCccCcCCccHHHHHHHH
Q 004092 371 NESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEGD-VDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (774)
Q Consensus 371 ~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~-flG~~~d-l~~~l~aaDI~V~PS~~E~qGfp~~llEAMA 447 (774)
++|+|+| |+. .|.+.+++++++++ + +|. +.|+.++ +..+|++||++|+||.+| +||++++|||+
T Consensus 312 ------~~lvivG~g~~--~~~~~l~~l~~~~~--~-~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E--~~gl~~lEAma 378 (466)
T PRK00654 312 ------GQLVLLGTGDP--ELEEAFRALAARYP--G-KVGVQIGYDEALAHRIYAGADMFLMPSRFE--PCGLTQLYALR 378 (466)
T ss_pred ------CEEEEEecCcH--HHHHHHHHHHHHCC--C-cEEEEEeCCHHHHHHHHhhCCEEEeCCCCC--CchHHHHHHHH
Confidence 8999999 643 35678889998775 3 454 5677644 578999999999999999 89999999999
Q ss_pred cCCCEEEcCCcccccccccC------ccEEEEcCCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhcCHHHHH
Q 004092 448 FRKPIIAPDLSNIRKYVDDR------VNGYLFPKENIKALTHIILQVIT---NGKISPFARNIASIGRRSVKNLMALETI 518 (774)
Q Consensus 448 ~G~PVIatd~ggi~EiV~dg------~~G~Lv~~~d~e~La~aI~~Ll~---d~~~~~~r~~m~~~ar~~ak~fs~~~~a 518 (774)
||+|||++++||+.|+|.++ .+|++++++|+++|+++|.++++ + ++.+.+|++++.+ ++|+|+.++
T Consensus 379 ~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~---~~~~~~~~~~~~~--~~fsw~~~a 453 (466)
T PRK00654 379 YGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQ---PPLWRALQRQAMA--QDFSWDKSA 453 (466)
T ss_pred CCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhc--cCCChHHHH
Confidence 99999999999999999887 89999999999999999999887 6 6677788877753 679999999
Q ss_pred HHHHHHHHHHhc
Q 004092 519 EGYAMLLENVLK 530 (774)
Q Consensus 519 ~~y~~L~e~ll~ 530 (774)
++|.++|+++++
T Consensus 454 ~~~~~lY~~~~~ 465 (466)
T PRK00654 454 EEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 17
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=4.2e-32 Score=324.21 Aligned_cols=367 Identities=14% Similarity=0.114 Sum_probs=263.8
Q ss_pred CCCCCeEEEEecC-------------CCCChHHHHHHHHHHHHHHcC--CeEEEEEcCCCcch------hh---h-----
Q 004092 141 GYRKPQLALVFPD-------------LLIDPQQLQMVTIAIALREIG--YAIQVYSLEDGRAH------EV---W----- 191 (774)
Q Consensus 141 ~~rk~rialV~~~-------------L~~GG~e~~v~~Lak~L~~~G--~eV~V~t~~~~~~~------~~---~----- 191 (774)
.-+++.|++|..+ -..||+..++..||++|.++| |+|+|+|....+.. .. .
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 4456778887663 235889999999999999999 99999998553210 00 0
Q ss_pred --------hhcCccEEEcccc------h--hHH-----------HHhhh--------------cCccEEEEcCCchhHHH
Q 004092 192 --------RNIGVPVAILQTG------R--EKA-----------SFVNW--------------LNYDGILVNSLEAKVVI 230 (774)
Q Consensus 192 --------~~~gi~i~~l~~~------~--~l~-----------~~i~~--------------~~~DIIhvhs~~~~~~l 230 (774)
..-|+.+..+++. . .+. .++.. ..||+||+|...++ ..
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG-~a 324 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAG-DS 324 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHH-HH
Confidence 1114444443311 0 011 11111 13999999998884 66
Q ss_pred HHHHhCCCCCCCEEEEEcCchhhhhH-HHhhhh-----------h-hhHHHHHHHHHHHhccEEEccCCcc----hhhcc
Q 004092 231 SNIMQEPFKSLPLVWTIHEGTLATRA-RNYASS-----------G-QLELLNDWKKVFNRATVVVFPDYVL----PMMYS 293 (774)
Q Consensus 231 ~~Ll~~~~~~ipvI~tiHg~~l~~~~-~k~~~~-----------~-~~~li~~~~~~~~~a~~vv~ps~~~----~~i~~ 293 (774)
+.++.. ..++|+|+|.|. +.... .+.+.. . ....+...+.....++.++..+... .-.|.
T Consensus 325 a~~L~~-~lgVP~V~T~HS--Lgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~ 401 (1050)
T TIGR02468 325 AALLSG-ALNVPMVLTGHS--LGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYD 401 (1050)
T ss_pred HHHHHH-hhCCCEEEECcc--chhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhc
Confidence 666544 678999999995 22100 000000 0 1122333444666777666655441 11232
Q ss_pred cCC---------------------CCCEEEeCCCCCCcccccccCchh------------------hHHHHHHhCCCCCC
Q 004092 294 AFD---------------------AGNYYVIPGSPAKAWEADTNMDLY------------------NDTVRVKMGFKPDD 334 (774)
Q Consensus 294 ~v~---------------------~~ki~vIpg~gvd~~~~~~~~~~~------------------k~~lR~~lgl~~~~ 334 (774)
.++ ..++.||| +|+|+..|.+..... ...++ .+..++++
T Consensus 402 ~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIP-pGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~-r~~~~pdk 479 (1050)
T TIGR02468 402 GFDVILERKLRARARRGVSCYGRFMPRMAVIP-PGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIM-RFFTNPRK 479 (1050)
T ss_pred cCCchhhhhhhhhhcccccccccCCCCeEEeC-CCCcHHHccCCCccccchhcccccccccccchhhHHHH-hhcccCCC
Confidence 222 23889999 589986665432111 01122 33456778
Q ss_pred EEEEEEecccccccccccHHHHHHHHHHchhhc--ccCCCCCCCeEEEEEe-CCCCC-------chHHHHHHHHHHcCCC
Q 004092 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEV--SVENESNSPIKVMILS-GDSTS-------NYSVVIEAIAHNLHYP 404 (774)
Q Consensus 335 ~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~--p~~~~~~~~v~LvIvG-G~~~e-------~Y~~~L~~la~~lgL~ 404 (774)
++|+++| |+.+. ||++.||+|+..+.+.. ++ +. +|+| |+..+ .+...++++++++++.
T Consensus 480 pvIL~VG-RL~p~---KGi~~LIeAf~~L~~l~~~~n-------L~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~ 547 (1050)
T TIGR02468 480 PMILALA-RPDPK---KNITTLVKAFGECRPLRELAN-------LT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY 547 (1050)
T ss_pred cEEEEEc-CCccc---cCHHHHHHHHHHhHhhccCCC-------EE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCC
Confidence 8999999 99998 99999999999987532 33 65 4667 54322 3446788899999999
Q ss_pred CccEEEccCc--ccHHHHHHHc----CEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCH
Q 004092 405 LGVVKHMAAE--GDVDSVLNTA----DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENI 478 (774)
Q Consensus 405 ~~~V~flG~~--~dl~~~l~aa----DI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~ 478 (774)
+ +|.|+|+. +++..+|+.| |+||+||.+| +||++++||||||+|||+|+.||+.|+|.++.+|+++++.|+
T Consensus 548 g-~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~E--gFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~ 624 (1050)
T TIGR02468 548 G-QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIE--PFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQ 624 (1050)
T ss_pred C-eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccC--CCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCH
Confidence 8 99999975 8999999988 6999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 004092 479 KALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (774)
Q Consensus 479 e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~~ 531 (774)
++||++|.++++| ++.+++|+++|++.+++|+|+.++++|.+.+..++..
T Consensus 625 eaLA~AL~~LL~D---pelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~~~ 674 (1050)
T TIGR02468 625 QAIADALLKLVAD---KQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCRPR 674 (1050)
T ss_pred HHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999 9999999999999998899999999999999988644
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=5.5e-32 Score=301.94 Aligned_cols=329 Identities=14% Similarity=0.169 Sum_probs=242.5
Q ss_pred CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-hhhcCccEEEcccc-------------------hhHHHHhh
Q 004092 153 DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-WRNIGVPVAILQTG-------------------REKASFVN 212 (774)
Q Consensus 153 ~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~-~~~~gi~i~~l~~~-------------------~~l~~~i~ 212 (774)
.-..||+|+++..+++.|.. +|++++......... ....|+.++.++.. ..+...++
T Consensus 17 ~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (380)
T PRK15484 17 PRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRILNIAH 93 (380)
T ss_pred CccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHHHHHHHHHH
Confidence 34579999999999999943 999999876432222 22333343333221 11222232
Q ss_pred h---cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch
Q 004092 213 W---LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP 289 (774)
Q Consensus 213 ~---~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~ 289 (774)
. .++|+||+|.... .+..+. ....+.|+|.++|+.... ... ..++.+++++....
T Consensus 94 ~~~~~~~~vi~v~~~~~--~~~~~~-~~~~~~~~v~~~h~~~~~----~~~---------------~~~~~ii~~S~~~~ 151 (380)
T PRK15484 94 KFTITKDSVIVIHNSMK--LYRQIR-ERAPQAKLVMHMHNAFEP----ELL---------------DKNAKIIVPSQFLK 151 (380)
T ss_pred hcCCCCCcEEEEeCcHH--hHHHHH-hhCCCCCEEEEEecccCh----hHh---------------ccCCEEEEcCHHHH
Confidence 3 4599999998554 333333 446678999999953111 011 12233333333322
Q ss_pred h-hcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcc
Q 004092 290 M-MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (774)
Q Consensus 290 ~-i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p 368 (774)
. +...+...++.+|| +|+|... +........+++++++++..+++++| ++.+. ||++.+++|+..+.+++|
T Consensus 152 ~~~~~~~~~~~i~vIp-ngvd~~~---~~~~~~~~~~~~~~~~~~~~~il~~G-rl~~~---Kg~~~Li~A~~~l~~~~p 223 (380)
T PRK15484 152 KFYEERLPNADISIVP-NGFCLET---YQSNPQPNLRQQLNISPDETVLLYAG-RISPD---KGILLLMQAFEKLATAHS 223 (380)
T ss_pred HHHHhhCCCCCEEEec-CCCCHHH---cCCcchHHHHHHhCCCCCCeEEEEec-cCccc---cCHHHHHHHHHHHHHhCC
Confidence 1 12223456788998 4888633 33333445677889888888999999 88888 999999999999998888
Q ss_pred cCCCCCCCeEEEEEe-CCC-----CCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccH
Q 004092 369 VENESNSPIKVMILS-GDS-----TSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPE 440 (774)
Q Consensus 369 ~~~~~~~~v~LvIvG-G~~-----~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~ 440 (774)
+ ++|+|+| |+. ...|.+.+++++++++ + +|.|+|++ +++..+|++||++|+||.+++ |||+
T Consensus 224 ~-------~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~-~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E-~f~~ 292 (380)
T PRK15484 224 N-------LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--D-RCIMLGGQPPEKMHNYYPLADLVVVPSQVEE-AFCM 292 (380)
T ss_pred C-------eEEEEEeCCccccccchhHHHHHHHHHHHhcC--C-cEEEeCCCCHHHHHHHHHhCCEEEeCCCCcc-cccc
Confidence 8 9999999 643 2346667777887554 4 69999986 689999999999999998633 8999
Q ss_pred HHHHHHHcCCCEEEcCCcccccccccCccEE-EEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHH
Q 004092 441 ILVKALCFRKPIIAPDLSNIRKYVDDRVNGY-LFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETI 518 (774)
Q Consensus 441 ~llEAMA~G~PVIatd~ggi~EiV~dg~~G~-Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a 518 (774)
+++||||||+|||+|+.||++|++.++.+|+ ++++.|+++++++|.++++| ++. .+|++++++.+ ++|+|+.++
T Consensus 293 ~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d---~~~-~~~~~~ar~~~~~~fsw~~~a 368 (380)
T PRK15484 293 VAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLAD---PEL-TQIAEQAKDFVFSKYSWEGVT 368 (380)
T ss_pred HHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC---HHH-HHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999998 56789999999999999999 775 67999999988 789999999
Q ss_pred HHHHHHHHHHh
Q 004092 519 EGYAMLLENVL 529 (774)
Q Consensus 519 ~~y~~L~e~ll 529 (774)
++|.++|++..
T Consensus 369 ~~~~~~l~~~~ 379 (380)
T PRK15484 369 QRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 19
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.1e-31 Score=313.86 Aligned_cols=366 Identities=12% Similarity=0.115 Sum_probs=264.4
Q ss_pred CCCCeEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh---------------h-----------
Q 004092 142 YRKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV---------------W----------- 191 (774)
Q Consensus 142 ~rk~rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~---------------~----------- 191 (774)
.++++|++|...+ ..||..-++..|.++|+++||+|.|+.+..+..... +
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 4568999998865 479999999999999999999999999865332100 0
Q ss_pred -hhcCccEEEccc------------c---hhHH----------HHhhh--cCccEEEEcCCchhHHHHHHHhC-----CC
Q 004092 192 -RNIGVPVAILQT------------G---REKA----------SFVNW--LNYDGILVNSLEAKVVISNIMQE-----PF 238 (774)
Q Consensus 192 -~~~gi~i~~l~~------------~---~~l~----------~~i~~--~~~DIIhvhs~~~~~~l~~Ll~~-----~~ 238 (774)
...|++++.+.. + .... .++.. .+|||||||.+.++ +++.++.. .+
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~Ta-LV~pll~~~y~~~~~ 637 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTA-FVAPLYWDLYAPKGF 637 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHH-HHHHHHHHHHhhccC
Confidence 001344443321 1 0111 11222 58999999999984 54333221 24
Q ss_pred CCCCEEEEEcCchhhhhH--HHh---------hh---hh---hhHHHHHHHHHHHhccEEEccCCcch--hh-c------
Q 004092 239 KSLPLVWTIHEGTLATRA--RNY---------AS---SG---QLELLNDWKKVFNRATVVVFPDYVLP--MM-Y------ 292 (774)
Q Consensus 239 ~~ipvI~tiHg~~l~~~~--~k~---------~~---~~---~~~li~~~~~~~~~a~~vv~ps~~~~--~i-~------ 292 (774)
.++|+|+|+|+...+... ..+ .. .. ....+...+..+..++.+...+..+. +. .
T Consensus 638 ~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~ 717 (977)
T PLN02939 638 NSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQ 717 (977)
T ss_pred CCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchH
Confidence 568999999983322110 000 00 00 01113334445555776665544411 11 1
Q ss_pred --ccCCCCCEEEeCCCCCCcccccccCch----------------hhHHHHHHhCCCC---CCEEEEEEecccccccccc
Q 004092 293 --SAFDAGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP---DDLVIAIVGTQFMYRGLWL 351 (774)
Q Consensus 293 --~~v~~~ki~vIpg~gvd~~~~~~~~~~----------------~k~~lR~~lgl~~---~~~vIl~vGsrl~~~KgiK 351 (774)
-.....++.+|+ +|+|...+.+.... .+..+++++|+++ +.++|++|| |+.++ |
T Consensus 718 ~~L~~~~~Kl~gIl-NGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VG-RL~~Q---K 792 (977)
T PLN02939 718 DTLKFHSKKFVGIL-NGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCIT-RLVPQ---K 792 (977)
T ss_pred HHhccccCCceEEe-cceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEee-cCCcc---c
Confidence 123457889999 48887655443221 1567899999984 468999999 99999 9
Q ss_pred cHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCccc--HHHHHHHcCEEE
Q 004092 352 EHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGD--VDSVLNTADVVI 428 (774)
Q Consensus 352 g~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~d--l~~~l~aaDI~V 428 (774)
|++.+++|+..+.. ++ ++|+|+| |+.. .|.+.++++++++++.+ +|.|+|..++ ...+|++||+||
T Consensus 793 GiDlLleA~~~Ll~--~d-------vqLVIvGdGp~~-~~e~eL~~La~~l~l~d-rV~FlG~~de~lah~IYAaADIFL 861 (977)
T PLN02939 793 GVHLIRHAIYKTAE--LG-------GQFVLLGSSPVP-HIQREFEGIADQFQSNN-NIRLILKYDEALSHSIYAASDMFI 861 (977)
T ss_pred ChHHHHHHHHHHhh--cC-------CEEEEEeCCCcH-HHHHHHHHHHHHcCCCC-eEEEEeccCHHHHHHHHHhCCEEE
Confidence 99999999988764 34 8999999 8643 46678899999999988 8999997744 468999999999
Q ss_pred EcCccCcCCccHHHHHHHHcCCCEEEcCCccccccccc---------CccEEEEcCCCHHHHHHHHHHHHH----cCCCc
Q 004092 429 YGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD---------RVNGYLFPKENIKALTHIILQVIT----NGKIS 495 (774)
Q Consensus 429 ~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d---------g~~G~Lv~~~d~e~La~aI~~Ll~----d~~~~ 495 (774)
+||.+| +||++++|||+||+|+|++++||+.|+|.+ +.+|++|++.|+++|+++|.+++. | +
T Consensus 862 mPSr~E--PfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~d---p 936 (977)
T PLN02939 862 IPSMFE--PCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRK---P 936 (977)
T ss_pred ECCCcc--CCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccC---H
Confidence 999999 899999999999999999999999999865 578999999999999999998875 7 7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 004092 496 PFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (774)
Q Consensus 496 ~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~~ 531 (774)
+.+++|++++. .++|+|+.++++|.++|++++..
T Consensus 937 e~~~~L~~~am--~~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 937 EVWKQLVQKDM--NIDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHh
Confidence 88888987653 36899999999999999998754
No 20
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.6e-31 Score=320.13 Aligned_cols=353 Identities=13% Similarity=0.131 Sum_probs=257.6
Q ss_pred CCCCeEEEEecCCC----CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh------------h----------hhcC
Q 004092 142 YRKPQLALVFPDLL----IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV------------W----------RNIG 195 (774)
Q Consensus 142 ~rk~rialV~~~L~----~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~------------~----------~~~g 195 (774)
..+++|++|...+. .||..-++..|+++|+++||+|.|+++..+..... + ..-|
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 34689999987653 69999999999999999999999999865431100 0 0013
Q ss_pred ccEEEcccch----------------h-------HHHHhhh--cCccEEEEcCCchhHHHHHHHhCC-----CCCCCEEE
Q 004092 196 VPVAILQTGR----------------E-------KASFVNW--LNYDGILVNSLEAKVVISNIMQEP-----FKSLPLVW 245 (774)
Q Consensus 196 i~i~~l~~~~----------------~-------l~~~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~-----~~~ipvI~ 245 (774)
++++.+.... + ...++.. .+|||||+|.+.+. .++.++... ..++|+|+
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~ta-lva~llk~~~~~~~~~~~p~V~ 743 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSA-PVAWLFKDHYAHYGLSKARVVF 743 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHH-HHHHHHHHhhhhhccCCCCEEE
Confidence 3333332110 0 0111221 48999999998773 555554321 34689999
Q ss_pred EEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch--hh-cccCC--CCCEEEeCCCCCCcccccccCc--
Q 004092 246 TIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP--MM-YSAFD--AGNYYVIPGSPAKAWEADTNMD-- 318 (774)
Q Consensus 246 tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~--~i-~~~v~--~~ki~vIpg~gvd~~~~~~~~~-- 318 (774)
|+|+....... ....+..++.++..+..+. +. ...+. ..++.+|+| |+|...+.+...
T Consensus 744 TiHnl~~~~n~--------------lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~N-GID~~~w~P~tD~~ 808 (1036)
T PLN02316 744 TIHNLEFGANH--------------IGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILN-GIDPDIWDPYNDNF 808 (1036)
T ss_pred EeCCcccchhH--------------HHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEEC-CccccccCCccccc
Confidence 99963221100 1123445666555544421 11 11222 478999994 888755433211
Q ss_pred --------------hh-hHHHHHHhCCCC-CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEE
Q 004092 319 --------------LY-NDTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMIL 382 (774)
Q Consensus 319 --------------~~-k~~lR~~lgl~~-~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIv 382 (774)
.. +..+++++|++. +.++|++|| |+.++ ||+++|++|+..+.+. + ++|+|+
T Consensus 809 lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VG-RL~~q---KGvdlLi~Al~~ll~~--~-------~qlVIv 875 (1036)
T PLN02316 809 IPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIIT-RLTHQ---KGIHLIKHAIWRTLER--N-------GQVVLL 875 (1036)
T ss_pred ccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEe-ccccc---cCHHHHHHHHHHHhhc--C-------cEEEEE
Confidence 11 456788999984 678999999 99999 9999999999998753 3 899999
Q ss_pred e-CCCCCchHHHHHHHHHHcCC--CCccEEEccCcccH--HHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC
Q 004092 383 S-GDSTSNYSVVIEAIAHNLHY--PLGVVKHMAAEGDV--DSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (774)
Q Consensus 383 G-G~~~e~Y~~~L~~la~~lgL--~~~~V~flG~~~dl--~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ 457 (774)
| |+. ..|...++++++++++ ++ +|.|.|..++. ..+|++||+||+||.+| +||++.+|||+||+|+|++++
T Consensus 876 G~Gpd-~~~e~~l~~La~~Lg~~~~~-rV~f~g~~de~lah~iyaaADiflmPS~~E--P~GLvqLEAMa~GtppVvs~v 951 (1036)
T PLN02316 876 GSAPD-PRIQNDFVNLANQLHSSHHD-RARLCLTYDEPLSHLIYAGADFILVPSIFE--PCGLTQLTAMRYGSIPVVRKT 951 (1036)
T ss_pred eCCCC-HHHHHHHHHHHHHhCccCCC-eEEEEecCCHHHHHHHHHhCcEEEeCCccc--CccHHHHHHHHcCCCeEEEcC
Confidence 9 765 3567889999998876 45 89998765443 37999999999999999 899999999999999999999
Q ss_pred cccccccccC-------------ccEEEEcCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 004092 458 SNIRKYVDDR-------------VNGYLFPKENIKALTHIILQVITNGKIS-PFARNIASIGRRSV-KNLMALETIEGYA 522 (774)
Q Consensus 458 ggi~EiV~dg-------------~~G~Lv~~~d~e~La~aI~~Ll~d~~~~-~~r~~m~~~ar~~a-k~fs~~~~a~~y~ 522 (774)
||++|+|.|+ .+|++|++.|+++|+.+|.+++.+ . +....+++.++..+ ++|+|+.++++|.
T Consensus 952 GGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~---~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 952 GGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA---WYDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred CCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9999999874 689999999999999999999986 4 34556788888887 6799999999999
Q ss_pred HHHHHHhc
Q 004092 523 MLLENVLK 530 (774)
Q Consensus 523 ~L~e~ll~ 530 (774)
++|+++.+
T Consensus 1029 ~LY~~a~~ 1036 (1036)
T PLN02316 1029 ELYHSARK 1036 (1036)
T ss_pred HHHHHHhC
Confidence 99998753
No 21
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=2.2e-31 Score=288.95 Aligned_cols=351 Identities=15% Similarity=0.140 Sum_probs=250.4
Q ss_pred eEEEEecCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCc-----cEEE----------cccchhHH
Q 004092 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGV-----PVAI----------LQTGREKA 208 (774)
Q Consensus 146 rialV~~~L--~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi-----~i~~----------l~~~~~l~ 208 (774)
||++|++.+ ..||++.++.++++.|.+.||+|++++............... .... ........
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 578899888 689999999999999999999999999866442222111110 0000 00001111
Q ss_pred HHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhH-HHhhhhhhhHHHHHHHHHHHhccEEEccCCc
Q 004092 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA-RNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (774)
Q Consensus 209 ~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~-~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~ 287 (774)
......++|+||+|+.............+..++|++++.|+....... .......... ..........++.+.+.+..
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~s~~ 159 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAW-FLFERRLLQAAAAVHATSEQ 159 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHHH-HHHHHHHHhcCCEEEECCHH
Confidence 223346899999998544222222222234678999999973222110 0001110000 11122344455655555433
Q ss_pred -chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhh
Q 004092 288 -LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (774)
Q Consensus 288 -~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~ 366 (774)
...........++.++|+ |+|...+.. ......+..++.+.+.++++++| ++.+. ||++.+++|+..+.++
T Consensus 160 ~~~~~~~~~~~~~~~vi~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~~~ 231 (375)
T cd03821 160 EAAEIRRLGLKAPIAVIPN-GVDIPPFAA---LPSRGRRRKFPILPDKRIILFLG-RLHPK---KGLDLLIEAFAKLAER 231 (375)
T ss_pred HHHHHHhhCCcccEEEcCC-CcChhccCc---chhhhhhhhccCCCCCcEEEEEe-Ccchh---cCHHHHHHHHHHhhhh
Confidence 223333445578899994 777633322 22111266777888889999999 88887 9999999999999988
Q ss_pred cccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHH
Q 004092 367 VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (774)
Q Consensus 367 ~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~ll 443 (774)
+++ ++++++| ++.. +...++.+++++++.+ +|.|+|++ +++..+|+.||++|+||..| |||++++
T Consensus 232 ~~~-------~~l~i~G~~~~~--~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~ 299 (375)
T cd03821 232 FPD-------WHLVIAGPDEGG--YRAELKQIAAALGLED-RVTFTGMLYGEDKAAALADADLFVLPSHSE--NFGIVVA 299 (375)
T ss_pred cCC-------eEEEEECCCCcc--hHHHHHHHHHhcCccc-eEEEcCCCChHHHHHHHhhCCEEEeccccC--CCCcHHH
Confidence 888 9999999 5432 3456677778889988 99999988 48999999999999999998 8999999
Q ss_pred HHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 004092 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (774)
Q Consensus 444 EAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~ 522 (774)
|||+||+|||+++.++..+++.+ ..|++++. ++++++++|.+++++ ++.+++|++++++.+ ++|+|+.++++|.
T Consensus 300 Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 300 EALACGTPVVTTDKVPWQELIEY-GCGWVVDD-DVDALAAALRRALEL---PQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHhcCCCEEEcCCCCHHHHhhc-CceEEeCC-ChHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999999999999999988 67888875 569999999999999 999999999999996 7899999999875
No 22
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=2.4e-31 Score=305.14 Aligned_cols=357 Identities=15% Similarity=0.170 Sum_probs=254.4
Q ss_pred CeEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh--------------------------hhc
Q 004092 145 PQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--------------------------RNI 194 (774)
Q Consensus 145 ~rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~--------------------------~~~ 194 (774)
++|++|.... ..||...++..|+++|+++||+|.|+++..+...... ...
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 4678887753 4799999999999999999999999998664322111 011
Q ss_pred CccEEEccc----------c-----hhH----------HHHhhh--cCccEEEEcCCchhHHHHHHHhCCCC--CCCEEE
Q 004092 195 GVPVAILQT----------G-----REK----------ASFVNW--LNYDGILVNSLEAKVVISNIMQEPFK--SLPLVW 245 (774)
Q Consensus 195 gi~i~~l~~----------~-----~~l----------~~~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~~~--~ipvI~ 245 (774)
+++++.+.. + ... ..+++. .+||+||+|.+.+. .+..++..... ++|+|+
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~-~~~~~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTA-LVPALLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHH-HHHHHHHhhccCCCCCEEE
Confidence 333332211 1 010 111222 58999999998773 55655544333 489999
Q ss_pred EEcCchhhh--hHHHhhh----------hh--hhHHHHHHHHHHHhccEEEccCCcch-hhc---c--c------CCCCC
Q 004092 246 TIHEGTLAT--RARNYAS----------SG--QLELLNDWKKVFNRATVVVFPDYVLP-MMY---S--A------FDAGN 299 (774)
Q Consensus 246 tiHg~~l~~--~~~k~~~----------~~--~~~li~~~~~~~~~a~~vv~ps~~~~-~i~---~--~------v~~~k 299 (774)
|+|+..... ....+.. .. ....+...+..+..++.++..+.... .+. . + ....+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 999733110 0000000 00 00012334446667776666554421 111 0 1 13468
Q ss_pred EEEeCCCCCCcccccccCc----------------hhhHHHHHHhCCCC--CCEEEEEEecccccccccccHHHHHHHHH
Q 004092 300 YYVIPGSPAKAWEADTNMD----------------LYNDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILRALL 361 (774)
Q Consensus 300 i~vIpg~gvd~~~~~~~~~----------------~~k~~lR~~lgl~~--~~~vIl~vGsrl~~~KgiKg~~lLLeA~~ 361 (774)
+.+|+ +|+|...+.+... ..+..+++++|++. +.++++++| |+.++ ||++.+++|+.
T Consensus 240 i~~I~-NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~ 314 (473)
T TIGR02095 240 LRGIL-NGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVIS-RLTQQ---KGVDLLLAALP 314 (473)
T ss_pred eEEEe-CCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEe-cCccc---cChHHHHHHHH
Confidence 89999 4888765443221 11456888999986 778999999 89998 99999999999
Q ss_pred HchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccC-c-ccHHHHHHHcCEEEEcCccCcCCc
Q 004092 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA-E-GDVDSVLNTADVVIYGSFLEEQTF 438 (774)
Q Consensus 362 ~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~-~-~dl~~~l~aaDI~V~PS~~E~qGf 438 (774)
.+.++ + ++|+|+| |+ +.+.+.+++++++++ + ++.+.+. . +++..+|++||++|+||.+| +|
T Consensus 315 ~l~~~--~-------~~lvi~G~g~--~~~~~~l~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E--~~ 378 (473)
T TIGR02095 315 ELLEL--G-------GQLVVLGTGD--PELEEALRELAERYP--G-NVRVIIGYDEALAHLIYAGADFILMPSRFE--PC 378 (473)
T ss_pred HHHHc--C-------cEEEEECCCC--HHHHHHHHHHHHHCC--C-cEEEEEcCCHHHHHHHHHhCCEEEeCCCcC--Cc
Confidence 98754 2 8999999 75 345678888887654 4 5766653 3 55788999999999999999 89
Q ss_pred cHHHHHHHHcCCCEEEcCCcccccccccC------ccEEEEcCCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHH
Q 004092 439 PEILVKALCFRKPIIAPDLSNIRKYVDDR------VNGYLFPKENIKALTHIILQVIT----NGKISPFARNIASIGRRS 508 (774)
Q Consensus 439 p~~llEAMA~G~PVIatd~ggi~EiV~dg------~~G~Lv~~~d~e~La~aI~~Ll~----d~~~~~~r~~m~~~ar~~ 508 (774)
|++++|||+||+|||+++.+|+.|+|.++ .+|+++++.|+++++++|.+++. + ++.+++|++++.+
T Consensus 379 gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~---~~~~~~~~~~~~~- 454 (473)
T TIGR02095 379 GLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD---PSLWEALQKNAMS- 454 (473)
T ss_pred HHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhc-
Confidence 99999999999999999999999999987 89999999999999999999988 8 8888899888753
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 004092 509 VKNLMALETIEGYAMLLENV 528 (774)
Q Consensus 509 ak~fs~~~~a~~y~~L~e~l 528 (774)
++|+|++++++|.++|+++
T Consensus 455 -~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 455 -QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred -cCCCcHHHHHHHHHHHHhC
Confidence 6799999999999999863
No 23
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=3e-31 Score=290.26 Aligned_cols=333 Identities=15% Similarity=0.162 Sum_probs=242.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc--chhhhhhcCccEEEcccc--------hhHHHHhhhcC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR--AHEVWRNIGVPVAILQTG--------REKASFVNWLN 215 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~--~~~~~~~~gi~i~~l~~~--------~~l~~~i~~~~ 215 (774)
||+++.+.+..||.++.+.++++.|.+.||+|++++..... ........++.+..+... ..+...++..+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999999999999999986644 223334445554432221 22344456789
Q ss_pred ccEEEEcCCchhHHHHHHHhCCCCCCC-EEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc-hhhcc
Q 004092 216 YDGILVNSLEAKVVISNIMQEPFKSLP-LVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-PMMYS 293 (774)
Q Consensus 216 ~DIIhvhs~~~~~~l~~Ll~~~~~~ip-vI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~-~~i~~ 293 (774)
||+||+|+.... .+..++... .+.| ++++.|+....... .... ... ..........++.+...+... .....
T Consensus 81 ~Dvv~~~~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~~--~~~~-~~~-~~~~~~~~~~~~~~i~~s~~~~~~~~~ 154 (358)
T cd03812 81 YDIVHVHGSSAS-GFILLAAKK-AGVKVRIAHSHNTSDSHDK--KKKI-LKY-KVLRKLINRLATDYLACSEEAGKWLFG 154 (358)
T ss_pred CCEEEEeCcchh-HHHHHHHhh-CCCCeEEEEeccccccccc--cchh-hHH-HHHHHHHHhcCCEEEEcCHHHHHHHHh
Confidence 999999998753 444444333 3444 56778863211100 0000 000 011122334455555554442 12222
Q ss_pred cCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCC
Q 004092 294 AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENES 373 (774)
Q Consensus 294 ~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~ 373 (774)
.+...++.+|| +|+|...+...... +. .+.+.+..+++++++++| ++.+. ||++.+++|+..+.+++|+
T Consensus 155 ~~~~~~~~vi~-ngvd~~~~~~~~~~-~~-~~~~~~~~~~~~~i~~vG-r~~~~---Kg~~~li~a~~~l~~~~~~---- 223 (358)
T cd03812 155 KVKNKKFKVIP-NGIDLEKFIFNEEI-RK-KRRELGILEDKFVIGHVG-RFSEQ---KNHEFLIEIFAELLKKNPN---- 223 (358)
T ss_pred CCCcccEEEEe-ccCcHHHcCCCchh-hh-HHHHcCCCCCCEEEEEEe-ccccc---cChHHHHHHHHHHHHhCCC----
Confidence 24567899999 47776433322111 22 256677788889999999 88888 9999999999999988888
Q ss_pred CCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCE
Q 004092 374 NSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPI 452 (774)
Q Consensus 374 ~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PV 452 (774)
++++|+| |+.. +.+++.++++++.+ +|.++|+.+++.++|+.||++|+||..| |+|++++||||+|+||
T Consensus 224 ---~~l~ivG~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~E--~~~~~~lEAma~G~Pv 293 (358)
T cd03812 224 ---AKLLLVGDGELE----EEIKKKVKELGLED-KVIFLGVRNDVPELLQAMDVFLFPSLYE--GLPLVLIEAQASGLPC 293 (358)
T ss_pred ---eEEEEEeCCchH----HHHHHHHHhcCCCC-cEEEecccCCHHHHHHhcCEEEeccccc--CCCHHHHHHHHhCCCE
Confidence 9999999 7765 67778888899988 9999999999999999999999999998 8999999999999999
Q ss_pred EEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 004092 453 IAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (774)
Q Consensus 453 Iatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a 509 (774)
|+|+.+|..+++.++ .|++..++++++++++|.++++| ++.++++...+....
T Consensus 294 I~s~~~~~~~~i~~~-~~~~~~~~~~~~~a~~i~~l~~~---~~~~~~~~~~~~~~~ 346 (358)
T cd03812 294 ILSDTITKEVDLTDL-VKFLSLDESPEIWAEEILKLKSE---DRRERSSESIKKKGL 346 (358)
T ss_pred EEEcCCchhhhhccC-ccEEeCCCCHHHHHHHHHHHHhC---cchhhhhhhhhhccc
Confidence 999999999999884 46777777899999999999999 999888877766554
No 24
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=7.8e-31 Score=308.16 Aligned_cols=362 Identities=10% Similarity=0.059 Sum_probs=252.1
Q ss_pred CCeEEEEecCCC-----------CChHHHHHHHHHHHH--------HHcCC----eEEEEEcCCCcch-----h---hhh
Q 004092 144 KPQLALVFPDLL-----------IDPQQLQMVTIAIAL--------REIGY----AIQVYSLEDGRAH-----E---VWR 192 (774)
Q Consensus 144 k~rialV~~~L~-----------~GG~e~~v~~Lak~L--------~~~G~----eV~V~t~~~~~~~-----~---~~~ 192 (774)
..+|+++..+.. .||+..++..+|++| +++|| +|+|+|....+.. . ...
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc
Confidence 478888888762 699999999999985 68999 7779997543211 0 111
Q ss_pred -hcCccEEEcccch------------------------hHHHHhh-h--cCccEEEEcCCchhHHHHHHHhCCCCCCCEE
Q 004092 193 -NIGVPVAILQTGR------------------------EKASFVN-W--LNYDGILVNSLEAKVVISNIMQEPFKSLPLV 244 (774)
Q Consensus 193 -~~gi~i~~l~~~~------------------------~l~~~i~-~--~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI 244 (774)
.-++.+..+++.. .+...+. . .+||+||+|.+.++ .++.++.+ ..++|.+
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~g-lva~lla~-~lgVP~v 412 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGN-LVASLLAR-KLGVTQC 412 (784)
T ss_pred CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchH-HHHHHHHH-hcCCCEE
Confidence 1233333333111 0111111 1 36999999999884 77766654 6789999
Q ss_pred EEEcCchh-hhhHHHhhhhhh------hHHHHHHHHHHHhccEEEccCCc----------------------chhhcccC
Q 004092 245 WTIHEGTL-ATRARNYASSGQ------LELLNDWKKVFNRATVVVFPDYV----------------------LPMMYSAF 295 (774)
Q Consensus 245 ~tiHg~~l-~~~~~k~~~~~~------~~li~~~~~~~~~a~~vv~ps~~----------------------~~~i~~~v 295 (774)
.|.|.-.. .++......... ..-+..-....+.++.++..+.. +.-+.+++
T Consensus 413 ~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGi 492 (784)
T TIGR02470 413 TIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGI 492 (784)
T ss_pred EECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCc
Confidence 99995110 000000000000 00011111234445555544421 01112344
Q ss_pred --CCCCEEEeCCCCCCcccccccCchh-h---------------HHHHHHhCC--CCCCEEEEEEecccccccccccHHH
Q 004092 296 --DAGNYYVIPGSPAKAWEADTNMDLY-N---------------DTVRVKMGF--KPDDLVIAIVGTQFMYRGLWLEHAL 355 (774)
Q Consensus 296 --~~~ki~vIpg~gvd~~~~~~~~~~~-k---------------~~lR~~lgl--~~~~~vIl~vGsrl~~~KgiKg~~l 355 (774)
...++.+|| +|+|...|.++.... + ...++.+|+ ++++++|+++| |+.+. ||++.
T Consensus 493 d~~~~Ki~VVp-PGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VG-RL~~~---KGid~ 567 (784)
T TIGR02470 493 DVFDPKFNIVS-PGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMA-RLDRV---KNLTG 567 (784)
T ss_pred cCCcCCeEEEC-CCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEe-CCCcc---CCHHH
Confidence 346889998 489987666655432 1 122456776 56778999999 99998 99999
Q ss_pred HHHHHHHchhhcccCCCCCCCeEEEEEeC-CCC------C--chHHHHHHHHHHcCCCCccEEEccCc---ccHHHHHH-
Q 004092 356 ILRALLPLFSEVSVENESNSPIKVMILSG-DST------S--NYSVVIEAIAHNLHYPLGVVKHMAAE---GDVDSVLN- 422 (774)
Q Consensus 356 LLeA~~~L~~~~p~~~~~~~~v~LvIvGG-~~~------e--~Y~~~L~~la~~lgL~~~~V~flG~~---~dl~~~l~- 422 (774)
|++|+.++....++ ++|+|+|| ... + .+.+.+.++++++++.+ +|.|+|.+ .++.++|.
T Consensus 568 LIeA~~~l~~l~~~-------~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g-~V~flG~~~~~~~~~elyr~ 639 (784)
T TIGR02470 568 LVECYGRSPKLREL-------VNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHG-QIRWIGAQLNRVRNGELYRY 639 (784)
T ss_pred HHHHHHHhHhhCCC-------eEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCC-eEEEccCcCCcccHHHHHHH
Confidence 99999887544444 89999994 321 1 24467888999999998 99999964 45556654
Q ss_pred ---HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH----HcCCCc
Q 004092 423 ---TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI----TNGKIS 495 (774)
Q Consensus 423 ---aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll----~d~~~~ 495 (774)
.+|+||+||.+| +||++++||||||+|||+|+.||+.|+|.|+.+|+++++.|+++++++|.+++ .| +
T Consensus 640 iAd~adVfV~PS~~E--pFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~d---p 714 (784)
T TIGR02470 640 IADTKGIFVQPALYE--AFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDED---P 714 (784)
T ss_pred hhccCcEEEECCccc--CCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC---H
Confidence 357999999999 89999999999999999999999999999999999999999999999999886 58 8
Q ss_pred HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 004092 496 PFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (774)
Q Consensus 496 ~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~ 525 (774)
+.+++|+++|++.+ ++|+|+.+++++.++.
T Consensus 715 ~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 715 SYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 89999999999998 6799999999999886
No 25
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=7.1e-31 Score=301.11 Aligned_cols=362 Identities=14% Similarity=0.138 Sum_probs=256.6
Q ss_pred CCCeEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh---------h-------------hcCc
Q 004092 143 RKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW---------R-------------NIGV 196 (774)
Q Consensus 143 rk~rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~---------~-------------~~gi 196 (774)
++++|++|.... ..||..-++..|.++|+++||+|.|+.+..+...... . ..++
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGGL 81 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCCc
Confidence 568899988765 4699999999999999999999999998543321000 0 0123
Q ss_pred cEEEcc----------cc---------hhHHHH----------h----hhcCccEEEEcCCchhHHHHHHHhC-CCCCCC
Q 004092 197 PVAILQ----------TG---------REKASF----------V----NWLNYDGILVNSLEAKVVISNIMQE-PFKSLP 242 (774)
Q Consensus 197 ~i~~l~----------~~---------~~l~~~----------i----~~~~~DIIhvhs~~~~~~l~~Ll~~-~~~~ip 242 (774)
+++.+. .+ ....++ + ...+|||||+|.+.++ .+..++.. ...++|
T Consensus 82 ~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~-l~~~~l~~~~~~~~~ 160 (485)
T PRK14099 82 DLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAG-LAPAYLHYSGRPAPG 160 (485)
T ss_pred eEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHH-HHHHHHHhCCCCCCC
Confidence 322221 00 011111 1 1358999999998874 55554432 134689
Q ss_pred EEEEEcCchhhhhHH-----------Hhhh-hhh--hHHHHHHHHHHHhccEEEccCCcch-hhc---cc--------CC
Q 004092 243 LVWTIHEGTLATRAR-----------NYAS-SGQ--LELLNDWKKVFNRATVVVFPDYVLP-MMY---SA--------FD 296 (774)
Q Consensus 243 vI~tiHg~~l~~~~~-----------k~~~-~~~--~~li~~~~~~~~~a~~vv~ps~~~~-~i~---~~--------v~ 296 (774)
+|+|+|+...+.... .... ... ...+...+..+..++.+...+.... .+. .+ ..
T Consensus 161 ~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~ 240 (485)
T PRK14099 161 TVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQR 240 (485)
T ss_pred EEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhh
Confidence 999999843221100 0000 000 0001223445667777766655522 111 11 13
Q ss_pred CCCEEEeCCCCCCcccccccCch----------------hhHHHHHHhCCCC--CCEEEEEEecccccccccccHHHHHH
Q 004092 297 AGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILR 358 (774)
Q Consensus 297 ~~ki~vIpg~gvd~~~~~~~~~~----------------~k~~lR~~lgl~~--~~~vIl~vGsrl~~~KgiKg~~lLLe 358 (774)
..++.+|+ +|+|...+.+.... .+..+++++|++. +.++++++| |+.++ ||++.+++
T Consensus 241 ~~ki~vI~-NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~Vg-RL~~~---KG~d~Li~ 315 (485)
T PRK14099 241 ADRLSGIL-NGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVIS-RLSWQ---KGLDLLLE 315 (485)
T ss_pred CCCeEEEe-cCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEe-cCCcc---ccHHHHHH
Confidence 57899999 48887554433221 1456788999974 467888999 89998 99999999
Q ss_pred HHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHH-HHcCEEEEcCccCcC
Q 004092 359 ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVL-NTADVVIYGSFLEEQ 436 (774)
Q Consensus 359 A~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l-~aaDI~V~PS~~E~q 436 (774)
|+..+.+. + ++|+|+| |+. .+.+.+++++++++ .+ .+.++|+.+++..+| ++||++|+||.+|
T Consensus 316 A~~~l~~~--~-------~~lvivG~G~~--~~~~~l~~l~~~~~-~~-v~~~~G~~~~l~~~~~a~aDifv~PS~~E-- 380 (485)
T PRK14099 316 ALPTLLGE--G-------AQLALLGSGDA--ELEARFRAAAQAYP-GQ-IGVVIGYDEALAHLIQAGADALLVPSRFE-- 380 (485)
T ss_pred HHHHHHhc--C-------cEEEEEecCCH--HHHHHHHHHHHHCC-CC-EEEEeCCCHHHHHHHHhcCCEEEECCccC--
Confidence 99988753 3 8999999 753 35577888888654 22 347999988999987 5699999999998
Q ss_pred CccHHHHHHHHcCCCEEEcCCcccccccccC---------ccEEEEcCCCHHHHHHHHHH---HHHcCCCcHHHHHHHHH
Q 004092 437 TFPEILVKALCFRKPIIAPDLSNIRKYVDDR---------VNGYLFPKENIKALTHIILQ---VITNGKISPFARNIASI 504 (774)
Q Consensus 437 Gfp~~llEAMA~G~PVIatd~ggi~EiV~dg---------~~G~Lv~~~d~e~La~aI~~---Ll~d~~~~~~r~~m~~~ 504 (774)
+||++++|||+||+|+|++++||++|+|.++ .+|+++++.|+++|+++|.+ +++| ++.+++|+++
T Consensus 381 ~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d---~~~~~~l~~~ 457 (485)
T PRK14099 381 PCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFAD---PVAWRRLQRN 457 (485)
T ss_pred CCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 8999999999999988889999999999775 58999999999999999997 6778 8899999998
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 505 GRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 505 ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
++ .++|+|++++++|.++|++++.
T Consensus 458 ~~--~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 458 GM--TTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred hh--hhcCChHHHHHHHHHHHHHHHh
Confidence 86 4789999999999999999875
No 26
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=6.5e-31 Score=296.74 Aligned_cols=344 Identities=13% Similarity=0.100 Sum_probs=240.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHH----HcCC--------eEEEEEcCCCc--ch----hhhhhcCccEEEcc-----
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALR----EIGY--------AIQVYSLEDGR--AH----EVWRNIGVPVAILQ----- 202 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~----~~G~--------eV~V~t~~~~~--~~----~~~~~~gi~i~~l~----- 202 (774)
+++++.++|..||+|+++.++|-+++ ..|- .|+++|..-.+ .. ......++++..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGN 242 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchh
Confidence 48999999999999999996655554 4333 56666653211 11 11122333322111
Q ss_pred -------------------------cchhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEE-EEcCchhhhhH
Q 004092 203 -------------------------TGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVW-TIHEGTLATRA 256 (774)
Q Consensus 203 -------------------------~~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~-tiHg~~l~~~~ 256 (774)
....+..+++..+||+||+|...+. .+..+.+. ..++|+++ +.|+..... .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~-l~g~laA~-lagvpviv~~~h~~~~~~-~ 319 (578)
T PRK15490 243 LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGAC-LMIALAAL-IAGVPRIQLGLRGLPPVV-R 319 (578)
T ss_pred hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccH-HHHHHHHH-hcCCCEEEEeecccCCcc-h
Confidence 0112344467799999999987763 44444432 45688854 466411000 0
Q ss_pred HHhhh-------------hhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHH
Q 004092 257 RNYAS-------------SGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDT 323 (774)
Q Consensus 257 ~k~~~-------------~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~ 323 (774)
..... ...+ ++..+..... ....+..++.+++.+|| +|+|...+.+.... ...
T Consensus 320 ~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~-----------~l~~~lgip~~KI~VIy-NGVD~~rf~p~~~~-~~~ 385 (578)
T PRK15490 320 KRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTR-----------HYADWLKLEAKHFQVVY-NGVLPPSTEPSSEV-PHK 385 (578)
T ss_pred hhHHHHHHHHhhhhceeEecch-hhhccHHHHH-----------HHHHHhCCCHHHEEEEe-CCcchhhcCccchh-hHH
Confidence 00000 0000 1111110000 00011235578899999 48887544332211 112
Q ss_pred HHH--HhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHH
Q 004092 324 VRV--KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHN 400 (774)
Q Consensus 324 lR~--~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~ 400 (774)
.+. ..+++++.++++++| ++.+. |++..+++|+..+.++.|+ ++|+|+| |+.. +.+++++++
T Consensus 386 ~r~~~~~~l~~~~~vIg~Vg-Rl~~~---Kg~~~LI~A~a~llk~~pd-------irLvIVGdG~~~----eeLk~la~e 450 (578)
T PRK15490 386 IWQQFTQKTQDADTTIGGVF-RFVGD---KNPFAWIDFAARYLQHHPA-------TRFVLVGDGDLR----AEAQKRAEQ 450 (578)
T ss_pred HHHHhhhccCCCCcEEEEEE-EEehh---cCHHHHHHHHHHHHhHCCC-------eEEEEEeCchhH----HHHHHHHHH
Confidence 233 234556677899999 88888 9999999999998888888 9999999 8765 788999999
Q ss_pred cCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHH
Q 004092 401 LHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKA 480 (774)
Q Consensus 401 lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~ 480 (774)
+++.+ +|.|+|+.+|+..+|+++|+||+||.+| |||++++||||||+|||+|+.||.+|+|.++.+|++++++|+++
T Consensus 451 lgL~d-~V~FlG~~~Dv~~~LaaADVfVlPS~~E--Gfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D~~a 527 (578)
T PRK15490 451 LGILE-RILFVGASRDVGYWLQKMNVFILFSRYE--GLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQTVN 527 (578)
T ss_pred cCCCC-cEEECCChhhHHHHHHhCCEEEEccccc--CccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCChhh
Confidence 99988 9999999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHH---HHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 004092 481 LTHII---LQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (774)
Q Consensus 481 La~aI---~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~ 527 (774)
+++++ ..+.++ ...+..|+++|++++ ++|+++.|+++|.++|.+
T Consensus 528 La~ai~lA~aL~~l---l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 528 LDQACRYAEKLVNL---WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 98887 345555 555567999999999 679999999999999975
No 27
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=4.5e-31 Score=293.10 Aligned_cols=347 Identities=17% Similarity=0.172 Sum_probs=251.7
Q ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchh--hhhhcCccEEEccc------------------chhHHHHhhh
Q 004092 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE--VWRNIGVPVAILQT------------------GREKASFVNW 213 (774)
Q Consensus 154 L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~--~~~~~gi~i~~l~~------------------~~~l~~~i~~ 213 (774)
...||+++++.++++.|.++||+|+|++....+... .....++.+..++. ...+...++.
T Consensus 18 ~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (398)
T cd03800 18 ADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRR 97 (398)
T ss_pred CCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHh
Confidence 347999999999999999999999999875432111 11122333332221 0112223344
Q ss_pred c--CccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhh--hhhHHHHHHHHHHHhccEEEccCCcch
Q 004092 214 L--NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASS--GQLELLNDWKKVFNRATVVVFPDYVLP 289 (774)
Q Consensus 214 ~--~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~--~~~~li~~~~~~~~~a~~vv~ps~~~~ 289 (774)
. +||+||+|..... .....+. +..++|+|++.|+............. ............+..++.+++++....
T Consensus 98 ~~~~~Div~~~~~~~~-~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 175 (398)
T cd03800 98 EGGRPDLIHAHYWDSG-LVALLLA-RRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEA 175 (398)
T ss_pred cCCCccEEEEecCccc-hHHHHHH-hhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHH
Confidence 4 9999999987663 4444443 35679999999973211100000000 001111223446667887777765521
Q ss_pred -hh--cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhh
Q 004092 290 -MM--YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (774)
Q Consensus 290 -~i--~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~ 366 (774)
.. .......++.+|| +|+|...+..... ....+..++.++++++++++| ++.+. ||++.+++|+..+.++
T Consensus 176 ~~~~~~~~~~~~~~~vi~-ng~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~g-r~~~~---k~~~~ll~a~~~l~~~ 248 (398)
T cd03800 176 EELYSLYGAYPRRIRVVP-PGVDLERFTPYGR--AEARRARLLRDPDKPRILAVG-RLDPR---KGIDTLIRAYAELPEL 248 (398)
T ss_pred HHHHHHccccccccEEEC-CCCCccceecccc--hhhHHHhhccCCCCcEEEEEc-ccccc---cCHHHHHHHHHHHHHh
Confidence 11 1122345688898 4777633322211 122255667777888999999 88887 9999999999999987
Q ss_pred cccCCCCCCCeEEEEEe-CCCC--CchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHH
Q 004092 367 VSVENESNSPIKVMILS-GDST--SNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (774)
Q Consensus 367 ~p~~~~~~~~v~LvIvG-G~~~--e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~ 441 (774)
.++ ++++++| ++.. +.+...++++++++++.+ +|.|+|++ +++..+|+.||++|+||..| |+|++
T Consensus 249 ~~~-------~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adi~l~ps~~e--~~~~~ 318 (398)
T cd03800 249 RER-------ANLVIVGGPRDDILAMDEEELRELARELGVID-RVDFPGRVSREDLPALYRAADVFVNPALYE--PFGLT 318 (398)
T ss_pred CCC-------eEEEEEECCCCcchhhhhHHHHHHHHhcCCCc-eEEEeccCCHHHHHHHHHhCCEEEeccccc--ccCcH
Confidence 777 9999999 5432 233456788899999988 99999986 68999999999999999998 89999
Q ss_pred HHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 004092 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (774)
Q Consensus 442 llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~ 520 (774)
++|||+||+|||+++.++..|++.++.+|++++++|+++++++|.+++++ ++.+++|++++++.+ ++|+|+.++++
T Consensus 319 l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 395 (398)
T cd03800 319 ALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTD---PALRRRLSRAGLRRARARYTWERVAAR 395 (398)
T ss_pred HHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999 78999999998
Q ss_pred HH
Q 004092 521 YA 522 (774)
Q Consensus 521 y~ 522 (774)
|.
T Consensus 396 ~~ 397 (398)
T cd03800 396 LL 397 (398)
T ss_pred Hh
Confidence 86
No 28
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=1.7e-30 Score=278.49 Aligned_cols=332 Identities=20% Similarity=0.251 Sum_probs=250.8
Q ss_pred eEEEEecCCC-CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEE------------cccchhHHHHhh
Q 004092 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI------------LQTGREKASFVN 212 (774)
Q Consensus 146 rialV~~~L~-~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~------------l~~~~~l~~~i~ 212 (774)
||+++++.+. .||.++.+..+++.|.+.||+|++++.............++.+.. ......+...++
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLK 80 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhc
Confidence 5788999888 999999999999999999999999998765411111111222222 222344566677
Q ss_pred hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhc
Q 004092 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMY 292 (774)
Q Consensus 213 ~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~ 292 (774)
..+||+||+++......+..+.. ..+|++.+.|+........... ....+..+..++.+.+.+.......
T Consensus 81 ~~~~d~i~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~ii~~s~~~~~~~ 150 (348)
T cd03820 81 NNKPDVVISFLTSLLTFLASLGL---KIVKLIVSEHNSPDAYKKRLRR-------LLLRRLLYRRADAVVVLTEEDRALY 150 (348)
T ss_pred ccCCCEEEEcCchHHHHHHHHhh---ccccEEEecCCCccchhhhhHH-------HHHHHHHHhcCCEEEEeCHHHHHHh
Confidence 78999999999873222222221 1159999999743321111000 0023445667777777766653334
Q ss_pred ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 004092 293 SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (774)
Q Consensus 293 ~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~ 372 (774)
......++.++|+ +++...+... ...+.+.++++| ++.+. ||++.+++|+..+.+..|+
T Consensus 151 ~~~~~~~~~vi~~-~~~~~~~~~~-------------~~~~~~~i~~~g-~~~~~---K~~~~l~~~~~~l~~~~~~--- 209 (348)
T cd03820 151 YKKFNKNVVVIPN-PLPFPPEEPS-------------SDLKSKRILAVG-RLVPQ---KGFDLLIEAWAKIAKKHPD--- 209 (348)
T ss_pred hccCCCCeEEecC-CcChhhcccc-------------CCCCCcEEEEEE-eeccc---cCHHHHHHHHHHHHhcCCC---
Confidence 4445678889984 6665221110 245567999999 77777 9999999999999887777
Q ss_pred CCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCC
Q 004092 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (774)
Q Consensus 373 ~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~P 451 (774)
++|+|+| |+.. ..+++.++++++.+ +|.+.|..+++..+|+.||++++||..| |+|++++|||+||+|
T Consensus 210 ----~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~i~ps~~e--~~~~~~~Ea~a~G~P 278 (348)
T cd03820 210 ----WKLRIVGDGPER----EALEALIKELGLED-RVILLGFTKNIEEYYAKASIFVLTSRFE--GFPMVLLEAMAFGLP 278 (348)
T ss_pred ----eEEEEEeCCCCH----HHHHHHHHHcCCCC-eEEEcCCcchHHHHHHhCCEEEeCcccc--ccCHHHHHHHHcCCC
Confidence 9999999 7655 66778888899988 9999999899999999999999999998 899999999999999
Q ss_pred EEEcCCcc-cccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004092 452 IIAPDLSN-IRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (774)
Q Consensus 452 VIatd~gg-i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~ 522 (774)
||+++.++ ..+++.++.+|+++++.|+++++++|.++++| ++.+++|++++++.+++|+|++++++|.
T Consensus 279 vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 279 VISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED---EELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred EEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 99999754 56677777799999999999999999999999 9999999999988889999999999885
No 29
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.1e-30 Score=292.68 Aligned_cols=344 Identities=15% Similarity=0.133 Sum_probs=237.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccch-----------hH-------
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR-----------EK------- 207 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~-----------~l------- 207 (774)
||+||++++-. +...||++|.++||+|+++|..+...... ++++..+.... .+
T Consensus 1 ~il~~~~~~p~-----~~~~la~~L~~~G~~v~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T cd03818 1 RILFVHQNFPG-----QFRHLAPALAAQGHEVVFLTEPNAAPPPG----GVRVVRYRPPRGPTSGTHPYLREFEEAVLRG 71 (396)
T ss_pred CEEEECCCCch-----hHHHHHHHHHHCCCEEEEEecCCCCCCCC----CeeEEEecCCCCCCCCCCccchhHHHHHHHH
Confidence 57788887651 24579999999999999999877543221 44544333210 00
Q ss_pred -------HHH-hhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEc------Cchh-hhh--HHHhh-hhhhhHHHH
Q 004092 208 -------ASF-VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIH------EGTL-ATR--ARNYA-SSGQLELLN 269 (774)
Q Consensus 208 -------~~~-i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiH------g~~l-~~~--~~k~~-~~~~~~li~ 269 (774)
... .+..+||+||+|+...... ++...+.++|+|.+.| +... +.. ..... .........
T Consensus 72 ~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~---~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (396)
T cd03818 72 QAVARALLALRAKGFRPDVIVAHPGWGETL---FLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNA 148 (396)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccchhh---hHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhh
Confidence 001 1225799999998765322 2223355688887554 3111 100 00000 000000011
Q ss_pred HHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccc
Q 004092 270 DWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (774)
Q Consensus 270 ~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~Kg 349 (774)
.....+..++.++.++............+++.+|| +|+|...+.+.... ....+....+.+++++++++|+.+.+.
T Consensus 149 ~~~~~~~~ad~vi~~s~~~~~~~~~~~~~ki~vI~-ngvd~~~f~~~~~~-~~~~~~~~~~~~~~~~i~~vgR~l~~~-- 224 (396)
T cd03818 149 LILLALAQADAGVSPTRWQRSTFPAELRSRISVIH-DGIDTDRLRPDPQA-RLRLPNGRVLTPGDEVITFVARNLEPY-- 224 (396)
T ss_pred HhHHHHHhCCEEECCCHHHHhhCcHhhccceEEeC-CCccccccCCCchh-hhcccccccCCCCCeEEEEECCCcccc--
Confidence 12345677888877766533322222236899999 48887444332211 111222334556778999999338888
Q ss_pred cccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeC-CC--------CCchHHHHHHHHHHcCC---CCccEEEccCc--c
Q 004092 350 WLEHALILRALLPLFSEVSVENESNSPIKVMILSG-DS--------TSNYSVVIEAIAHNLHY---PLGVVKHMAAE--G 415 (774)
Q Consensus 350 iKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG-~~--------~e~Y~~~L~~la~~lgL---~~~~V~flG~~--~ 415 (774)
||++.+++|+..+.++.|+ ++|+|+|+ .. .+.+ .+++.++++. .+ +|.|+|++ +
T Consensus 225 -Kg~~~ll~a~~~l~~~~~~-------~~lvivG~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~-~V~f~G~v~~~ 292 (396)
T cd03818 225 -RGFHVFMRALPRLLRARPD-------ARVVIVGGDGVSYGAPPPDGESW---KQHMLDELGGRLDLS-RVHFLGRVPYD 292 (396)
T ss_pred -cCHHHHHHHHHHHHHHCCC-------cEEEEEcCCCcccCCCCCCcccH---HHHHHHHhhcccCcc-eEEEeCCCCHH
Confidence 9999999999999988888 99999993 21 1112 2333333332 34 79999987 7
Q ss_pred cHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc
Q 004092 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS 495 (774)
Q Consensus 416 dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~ 495 (774)
++..+|+.||++|+||..| ++|++++||||||+|||+|+.+++.|++.++.+|++++++|+++++++|.++++| +
T Consensus 293 ~~~~~l~~adv~v~~s~~e--~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~---~ 367 (396)
T cd03818 293 QYLALLQVSDVHVYLTYPF--VLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDD---P 367 (396)
T ss_pred HHHHHHHhCcEEEEcCccc--ccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhC---H
Confidence 8999999999999999988 8999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHH-hcCHHHHHHHHH
Q 004092 496 PFARNIASIGRRSVK-NLMALETIEGYA 522 (774)
Q Consensus 496 ~~r~~m~~~ar~~ak-~fs~~~~a~~y~ 522 (774)
+.+.+|+++|++.++ +|+|+.++++|.
T Consensus 368 ~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 368 ARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 999999999999995 599999999886
No 30
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.8e-30 Score=280.71 Aligned_cols=347 Identities=19% Similarity=0.217 Sum_probs=250.7
Q ss_pred eEEEEecCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh-hhcCcc----------EEEcccchhHHHHhh
Q 004092 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW-RNIGVP----------VAILQTGREKASFVN 212 (774)
Q Consensus 146 rialV~~~L~--~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~-~~~gi~----------i~~l~~~~~l~~~i~ 212 (774)
||++|.+... .||.+..+..++++|.+.||+|++++.......... ....++ .........+...++
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 4677776553 389999999999999999999999997653211100 000000 111122334555667
Q ss_pred hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHH-HHHHHHHHHhccEEEccCCcchhh
Q 004092 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLEL-LNDWKKVFNRATVVVFPDYVLPMM 291 (774)
Q Consensus 213 ~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~l-i~~~~~~~~~a~~vv~ps~~~~~i 291 (774)
..+||+||++++.......... .+..++|+++++|+....+ ............ ....+..+..++.+.+++......
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~ 158 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRA-ARRLGIPVVTSYHTDFPEY-LRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADE 158 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHH-HHHcCCCEEEEEecChHHH-hhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHH
Confidence 7899999999776532333333 2356799999999732221 111111111111 122333556677777776664443
Q ss_pred cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCC
Q 004092 292 YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (774)
Q Consensus 292 ~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~ 371 (774)
.......++.+++ .|+|...+..... ....+.+++ ..+.++++++| ++.+. ||++.+++|+..+.++ ++
T Consensus 159 ~~~~~~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~-~~~~~~i~~~G-~~~~~---k~~~~~i~~~~~l~~~-~~-- 227 (364)
T cd03814 159 LRARGFRRVRLWP-RGVDTELFHPRRR--DEALRARLG-PPDRPVLLYVG-RLAPE---KNLEALLDADLPLRRR-PP-- 227 (364)
T ss_pred HhccCCCceeecC-CCccccccCcccc--cHHHHHHhC-CCCCeEEEEEe-ccccc---cCHHHHHHHHHHhhhc-CC--
Confidence 3334446777887 4777643322211 233445555 55667899999 77777 9999999999999877 77
Q ss_pred CCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHc
Q 004092 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF 448 (774)
Q Consensus 372 ~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~ 448 (774)
++++|+| |+.. +.++ +..+ +|.++|+. +++..+|+.||++|+||..| ++|++++|||||
T Consensus 228 -----~~l~i~G~~~~~----~~~~------~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e--~~~~~~lEa~a~ 289 (364)
T cd03814 228 -----VRLVIVGDGPAR----ARLE------ARYP-NVHFLGFLDGEELAAAYASADVFVFPSRTE--TFGLVVLEAMAS 289 (364)
T ss_pred -----ceEEEEeCCchH----HHHh------ccCC-cEEEEeccCHHHHHHHHHhCCEEEECcccc--cCCcHHHHHHHc
Confidence 9999999 6654 2232 4555 79999954 78999999999999999998 899999999999
Q ss_pred CCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004092 449 RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (774)
Q Consensus 449 G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e 526 (774)
|+|||+++.++..+++.++.+|+++++.|+++++++|.++++| ++.+++|++++++.+++|+|+++++.+.++|+
T Consensus 290 g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 290 GLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLAD---PELRRRMAARARAEAERRSWEAFLDNLLEAYR 364 (364)
T ss_pred CCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHhhcCHHHHHHHHHHhhC
Confidence 9999999999999999998899999999999999999999999 99999999999999988999999999998873
No 31
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.98 E-value=1.8e-30 Score=285.59 Aligned_cols=338 Identities=18% Similarity=0.180 Sum_probs=243.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhhhhhcCccEEE--------------cccchhHHHHh
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAI--------------LQTGREKASFV 211 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~-~~~~~~~gi~i~~--------------l~~~~~l~~~i 211 (774)
|+++.+.+.+ +.++++..+++.|. ||++.+++...... .......++.... .........++
T Consensus 2 ~~~~~~~~~~-~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (367)
T cd05844 2 VLIFRPLLLA-PSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRLL 78 (367)
T ss_pred EEEEeCCCCC-CchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHHH
Confidence 4555555544 49999999999995 78888887654322 1111222221110 11111233346
Q ss_pred hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch--
Q 004092 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP-- 289 (774)
Q Consensus 212 ~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~-- 289 (774)
+..+||+||+|+.... .....+. +..++|+|++.|+............................++.+++.+....
T Consensus 79 ~~~~~dvvh~~~~~~~-~~~~~~~-~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 156 (367)
T cd05844 79 RRHRPDLVHAHFGFDG-VYALPLA-RRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRDR 156 (367)
T ss_pred HhhCCCEEEeccCchH-HHHHHHH-HHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHHH
Confidence 7789999999976653 3333332 35679999999973221111000000011111223345567777777665532
Q ss_pred hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 004092 290 MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (774)
Q Consensus 290 ~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~ 369 (774)
....+++..++.++|+ |+|...+... ....+...++++| ++.+. ||++.+++|+..+.+++++
T Consensus 157 ~~~~~~~~~~i~vi~~-g~d~~~~~~~------------~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~~~~~~ 219 (367)
T cd05844 157 LLALGFPPEKVHVHPI-GVDTAKFTPA------------TPARRPPRILFVG-RFVEK---KGPLLLLEAFARLARRVPE 219 (367)
T ss_pred HHHcCCCHHHeEEecC-CCCHHhcCCC------------CCCCCCcEEEEEE-eeccc---cChHHHHHHHHHHHHhCCC
Confidence 2223556678889984 7776322211 1123456899999 77777 9999999999999988888
Q ss_pred CCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCcc------CcCCccH
Q 004092 370 ENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL------EEQTFPE 440 (774)
Q Consensus 370 ~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~------E~qGfp~ 440 (774)
++|+|+| |+.. +.++++++++++.+ +|.|+|++ +++..+|+.||++|+||.. | |+|+
T Consensus 220 -------~~l~ivG~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E--~~~~ 285 (367)
T cd05844 220 -------VRLVIIGDGPLL----AALEALARALGLGG-RVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAE--GLPV 285 (367)
T ss_pred -------eEEEEEeCchHH----HHHHHHHHHcCCCC-eEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCcc--CCch
Confidence 9999999 6644 67889999989988 89999987 7899999999999999963 5 8999
Q ss_pred HHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHH
Q 004092 441 ILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIE 519 (774)
Q Consensus 441 ~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~ 519 (774)
+++|||+||+|||+++.++..|++.++.+|++++++|+++++++|.++++| ++.+++|+.++++.+ ++|+|+.+++
T Consensus 286 ~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~ 362 (367)
T cd05844 286 VLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLAD---PDLRARMGAAGRRRVEERFDLRRQTA 362 (367)
T ss_pred HHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999 6799999999
Q ss_pred HHHH
Q 004092 520 GYAM 523 (774)
Q Consensus 520 ~y~~ 523 (774)
++.+
T Consensus 363 ~l~~ 366 (367)
T cd05844 363 KLEA 366 (367)
T ss_pred HHhc
Confidence 9875
No 32
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.98 E-value=2.1e-30 Score=283.63 Aligned_cols=332 Identities=18% Similarity=0.208 Sum_probs=243.0
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
++|+++......||.++++..+++.|.++||+|++++.... .+...++..++|+||+|..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~--------------------~~~~~~~~~~~diih~~~~ 60 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK--------------------ALISKIEIINADIVHLHWI 60 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc--------------------hhhhChhcccCCEEEEEcc
Confidence 47899998888899999999999999999999999996543 2344566789999999886
Q ss_pred chhHHHHHHHhCCCCCCCEEEEEcCchhhh-------hHHHh-------------hh-hhhhHHHHHHHHHH-HhccEEE
Q 004092 225 EAKVVISNIMQEPFKSLPLVWTIHEGTLAT-------RARNY-------------AS-SGQLELLNDWKKVF-NRATVVV 282 (774)
Q Consensus 225 ~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~-------~~~k~-------------~~-~~~~~li~~~~~~~-~~a~~vv 282 (774)
.........+.....++|+|+++|+..... ....+ .. .............+ .....++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (365)
T cd03825 61 HGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIV 140 (365)
T ss_pred ccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEE
Confidence 542221122211114789999999732110 00000 00 00011111111122 2233445
Q ss_pred ccCCcchh-hcc--cCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEeccccc--ccccccHHHHH
Q 004092 283 FPDYVLPM-MYS--AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMY--RGLWLEHALIL 357 (774)
Q Consensus 283 ~ps~~~~~-i~~--~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~--~KgiKg~~lLL 357 (774)
.++..... ... .++..++.++|+ |+|...+ .+..+...+..+++++++.+++++| +... . ||++.++
T Consensus 141 ~~s~~~~~~~~~~~~~~~~~~~vi~n-gi~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~---K~~~~ll 212 (365)
T cd03825 141 APSRWLADCARSSSLFKGIPIEVIPN-GIDTTIF---RPRDKREARKRLGLPADKKIILFGA-VGGTDPR---KGFDELI 212 (365)
T ss_pred ehhHHHHHHHHhccccCCCceEEeCC-CCccccc---CCCcHHHHHHHhCCCCCCeEEEEEe-cCCCccc---cCHHHHH
Confidence 55444221 111 245678999994 7877333 2333456677888888887766666 5443 5 9999999
Q ss_pred HHHHHchhh-cccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcc---cHHHHHHHcCEEEEcCc
Q 004092 358 RALLPLFSE-VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG---DVDSVLNTADVVIYGSF 432 (774)
Q Consensus 358 eA~~~L~~~-~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~---dl~~~l~aaDI~V~PS~ 432 (774)
+|+..+.++ .++ ++++++| ++.... .++.. +|.++|+.. ++..+|+.||++++||.
T Consensus 213 ~a~~~l~~~~~~~-------~~~~i~G~~~~~~~-----------~~~~~-~v~~~g~~~~~~~~~~~~~~ad~~l~ps~ 273 (365)
T cd03825 213 EALKRLAERWKDD-------IELVVFGASDPEIP-----------PDLPF-PVHYLGSLNDDESLALIYSAADVFVVPSL 273 (365)
T ss_pred HHHHHhhhccCCC-------eEEEEeCCCchhhh-----------ccCCC-ceEecCCcCCHHHHHHHHHhCCEEEeccc
Confidence 999998765 455 9999999 543211 14556 899999874 68899999999999999
Q ss_pred cCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hh
Q 004092 433 LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KN 511 (774)
Q Consensus 433 ~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~ 511 (774)
.| |+|++++|||+||+|||+++.++..|++.++.+|++++..|+++++++|.+++++ ++.+.+|++++++.+ ++
T Consensus 274 ~e--~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~ 348 (365)
T cd03825 274 QE--NFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD---PDEREELGEAARELAENE 348 (365)
T ss_pred cc--cccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHh
Confidence 88 8999999999999999999999999999999899999999999999999999999 998999999999999 57
Q ss_pred cCHHHHHHHHHHHHHHH
Q 004092 512 LMALETIEGYAMLLENV 528 (774)
Q Consensus 512 fs~~~~a~~y~~L~e~l 528 (774)
|+|+.++++|.++|+++
T Consensus 349 ~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 349 FDSRVQAKRYLSLYEEL 365 (365)
T ss_pred cCHHHHHHHHHHHHhhC
Confidence 99999999999999863
No 33
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.98 E-value=9.8e-30 Score=273.81 Aligned_cols=339 Identities=17% Similarity=0.217 Sum_probs=245.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc-------------hhHHHHhh
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG-------------REKASFVN 212 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~-------------~~l~~~i~ 212 (774)
+|+++.+. .||.+.++..+++.|.+.||+|++++....... .....++.+..++.. ..+...++
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLLR 77 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-ccccCCceEEeccccccccChHhHHHHHHHHHHHHH
Confidence 46777777 799999999999999999999999998664432 223344444333322 12345566
Q ss_pred hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhc
Q 004092 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMY 292 (774)
Q Consensus 213 ~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~ 292 (774)
..+||+||+++.... .+..+........+++++.|+............ .......+..+..++.+.+.+.......
T Consensus 78 ~~~~dvv~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 153 (359)
T cd03808 78 KERPDIVHTHTPKPG-ILGRLAARLAGVPKVIYTVHGLGFVFTSGGLKR---RLYLLLERLALRFTDKVIFQNEDDRDLA 153 (359)
T ss_pred hcCCCEEEEccccch-hHHHHHHHHcCCCCEEEEecCcchhhccchhHH---HHHHHHHHHHHhhccEEEEcCHHHHHHH
Confidence 789999999987663 444444333456788998887332211111100 1111122334455666666655532221
Q ss_pred c--c-CCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 004092 293 S--A-FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (774)
Q Consensus 293 ~--~-v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~ 369 (774)
. . .+..+..++++++++...+..... ...++.+.++++| ++.+. ||++.+++++..+.+++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~G-~~~~~---k~~~~li~~~~~l~~~~~~ 219 (359)
T cd03808 154 LKLGIIKKKKTVLIPGSGVDLDRFSPSPE----------PIPEDDPVFLFVA-RLLKD---KGIDELLEAARILKAKGPN 219 (359)
T ss_pred HHhcCCCcCceEEecCCCCChhhcCcccc----------ccCCCCcEEEEEe-ccccc---cCHHHHHHHHHHHHhcCCC
Confidence 1 1 111334444456777633222111 0245677999999 88888 9999999999999887777
Q ss_pred CCCCCCCeEEEEEe-CCCCCchHHHHHH-HHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHH
Q 004092 370 ENESNSPIKVMILS-GDSTSNYSVVIEA-IAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (774)
Q Consensus 370 ~~~~~~~v~LvIvG-G~~~e~Y~~~L~~-la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA 447 (774)
++|+|+| ++..+. ... .+.+++..+ +|.++|+.+++.++|+.||++++||..| |+|++++|||+
T Consensus 220 -------~~l~i~G~~~~~~~----~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~i~ps~~e--~~~~~~~Ea~~ 285 (359)
T cd03808 220 -------VRLLLVGDGDEENP----AAILEIEKLGLEG-RVEFLGFRDDVPELLAAADVFVLPSYRE--GLPRVLLEAMA 285 (359)
T ss_pred -------eEEEEEcCCCcchh----hHHHHHHhcCCcc-eEEEeeccccHHHHHHhccEEEecCccc--CcchHHHHHHH
Confidence 9999999 655422 222 356667777 8999999999999999999999999997 89999999999
Q ss_pred cCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 004092 448 FRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (774)
Q Consensus 448 ~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~ 522 (774)
||+|||+|+.++..+++.++.+|++++++|+++++++|.+++.+ ++.+.++++++++.+ ++|+++.+++.|.
T Consensus 286 ~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 286 MGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIED---PELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred cCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999999999999989999999999999999999999999 999999999999996 7899999998875
No 34
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.98 E-value=5.1e-30 Score=279.28 Aligned_cols=350 Identities=19% Similarity=0.143 Sum_probs=247.6
Q ss_pred eEEEEecCCC-CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhc--CccEE---EcccchhHHHHhhhcCccEE
Q 004092 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI--GVPVA---ILQTGREKASFVNWLNYDGI 219 (774)
Q Consensus 146 rialV~~~L~-~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~--gi~i~---~l~~~~~l~~~i~~~~~DII 219 (774)
||++|.+... .||.+.++..+++.|.+.||+|.+++............. ..... .......+...++..+||+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 5788888766 799999999999999999999999987553311111110 01111 11122334556777899999
Q ss_pred EEcCCchh--HHHHHHH--hCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccC-Ccchhhccc
Q 004092 220 LVNSLEAK--VVISNIM--QEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPD-YVLPMMYSA 294 (774)
Q Consensus 220 hvhs~~~~--~~l~~Ll--~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps-~~~~~i~~~ 294 (774)
|+++.... ......+ .....++|+|+++|+...... .. .........+..++.+++++ .........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--~~------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 152 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP--RP------GDRALLRLLLRRADAVIVMSSELLRALLLR 152 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc--ch------hhhHHHHHHHhcCCEEEEeeHHHHHHHHhh
Confidence 99873210 1111111 112467899999997411100 00 00111233445677777764 222222222
Q ss_pred CCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCC
Q 004092 295 FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (774)
Q Consensus 295 v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~ 374 (774)
....++.++| ++++...+.... . .++.....+.++++++| ++.+. ||++.+++|+..+.+++++
T Consensus 153 ~~~~~~~~i~-~~~~~~~~~~~~----~--~~~~~~~~~~~~i~~~G-~~~~~---K~~~~ll~a~~~~~~~~~~----- 216 (366)
T cd03822 153 AYPEKIAVIP-HGVPDPPAEPPE----S--LKALGGLDGRPVLLTFG-LLRPY---KGLELLLEALPLLVAKHPD----- 216 (366)
T ss_pred cCCCcEEEeC-CCCcCcccCCch----h--hHhhcCCCCCeEEEEEe-eccCC---CCHHHHHHHHHHHHhhCCC-----
Confidence 2246889998 466653222111 1 13444566778999999 88888 9999999999999988777
Q ss_pred CCeEEEEEe-CCCCCc-hHHHHHHHHHHcCCCCccEEEccC-c--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcC
Q 004092 375 SPIKVMILS-GDSTSN-YSVVIEAIAHNLHYPLGVVKHMAA-E--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (774)
Q Consensus 375 ~~v~LvIvG-G~~~e~-Y~~~L~~la~~lgL~~~~V~flG~-~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G 449 (774)
++|+|+| +..... ......++++++++.+ +|.|+|. + +++..+|+.||++++||..|.+|+|++++|||+||
T Consensus 217 --~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G 293 (366)
T cd03822 217 --VRLLVAGETHPDLERYRGEAYALAERLGLAD-RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFG 293 (366)
T ss_pred --eEEEEeccCccchhhhhhhhHhHHHhcCCCC-cEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcC
Confidence 9999999 543311 1111113478889988 9999986 4 78999999999999999988667999999999999
Q ss_pred CCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004092 450 KPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (774)
Q Consensus 450 ~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e 526 (774)
+|||+++.++ .+.+.++.+|++++++|+++++++|..++++ ++.+.+|++++++.+++|+|++++++|.++|+
T Consensus 294 ~PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 294 KPVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLAD---PELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred CCEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 9999999999 7777777889999999999999999999999 99999999999999977999999999999873
No 35
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.98 E-value=1.5e-30 Score=292.47 Aligned_cols=337 Identities=15% Similarity=0.152 Sum_probs=222.4
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchh--hhhhc--------------Ccc------EEEcc
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE--VWRNI--------------GVP------VAILQ 202 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~--~~~~~--------------gi~------i~~l~ 202 (774)
+||++|...+..||+|+.+.+|++.|.++||+|.++......... ..+.. ++. ...+.
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 589999999999999999999999999999999998875422111 00000 000 01112
Q ss_pred cchhHHHHh-hhcCccEEEEcCCchhH--H--HHH---HHhCCCCCCCEEEEEcCchhhh----------hHH-H-----
Q 004092 203 TGREKASFV-NWLNYDGILVNSLEAKV--V--ISN---IMQEPFKSLPLVWTIHEGTLAT----------RAR-N----- 258 (774)
Q Consensus 203 ~~~~l~~~i-~~~~~DIIhvhs~~~~~--~--l~~---Ll~~~~~~ipvI~tiHg~~l~~----------~~~-k----- 258 (774)
......+++ +..+|||||+|...... + +.. ++.....++|+|||.|+...+. ... .
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 223334445 56799999999876521 1 111 1112345789999999832110 000 0
Q ss_pred ----h---hhhhhhHHHHHHHH----HHHhccEEEccCCcchhh-cccCCCCCEEEeCCCCCCcccccccCchhhHHHHH
Q 004092 259 ----Y---ASSGQLELLNDWKK----VFNRATVVVFPDYVLPMM-YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (774)
Q Consensus 259 ----~---~~~~~~~li~~~~~----~~~~a~~vv~ps~~~~~i-~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~ 326 (774)
+ ....+.......+. .......++.++..+... ...+...++.+|| +|+|...+.+.....
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~-NGid~~~~~~~~~~~------ 233 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN-NGIDMATEAILAELP------ 233 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeC-CCcCccccccccccc------
Confidence 1 00111122222222 222334566676663322 2233457899999 488863222221110
Q ss_pred HhCCCCCCEEEEEEeccc-ccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCC
Q 004092 327 KMGFKPDDLVIAIVGTQF-MYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYP 404 (774)
Q Consensus 327 ~lgl~~~~~vIl~vGsrl-~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~ 404 (774)
....++++++++++|+.+ .++ ||++.+++|+..+. ++ ++|+|+| |+... .
T Consensus 234 ~~~~~~~~~~il~v~~~~~~~~---Kg~~~li~A~~~l~---~~-------~~L~ivG~g~~~~---------------~ 285 (405)
T PRK10125 234 PVRETQGKPKIAVVAHDLRYDG---KTDQQLVREMMALG---DK-------IELHTFGKFSPFT---------------A 285 (405)
T ss_pred ccccCCCCCEEEEEEeccccCC---ccHHHHHHHHHhCC---CC-------eEEEEEcCCCccc---------------c
Confidence 001234567899999424 345 89999999999874 34 8999999 65321 1
Q ss_pred CccEEEccCc---ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHH
Q 004092 405 LGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL 481 (774)
Q Consensus 405 ~~~V~flG~~---~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~L 481 (774)
. .|.++|+. .++.++|++||+||+||..| |||++++||||||+|||+|++||++|++.++ +|++++++|+++|
T Consensus 286 ~-~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~E--gfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~L 361 (405)
T PRK10125 286 G-NVVNHGFETDKRKLMSALNQMDALVFSSRVD--NYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQL 361 (405)
T ss_pred c-ceEEecCcCCHHHHHHHHHhCCEEEECCccc--cCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHH
Confidence 2 58888864 67899999999999999988 8999999999999999999999999999775 8999999999999
Q ss_pred HHHHHHHHHcCCCcHHHHH----HHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 004092 482 THIILQVITNGKISPFARN----IASIGRRSV-KNLMALETIEGYAMLLENV 528 (774)
Q Consensus 482 a~aI~~Ll~d~~~~~~r~~----m~~~ar~~a-k~fs~~~~a~~y~~L~e~l 528 (774)
|+++ + +..+++ +..++++.+ ++|+++.++++|.++|+++
T Consensus 362 a~~~-----~---~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 362 AQLS-----K---PEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred Hhcc-----C---HHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9864 3 333332 235577777 6799999999999999863
No 36
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.98 E-value=4.3e-30 Score=294.66 Aligned_cols=357 Identities=18% Similarity=0.178 Sum_probs=247.8
Q ss_pred eEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh--------------------------hhcC
Q 004092 146 QLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--------------------------RNIG 195 (774)
Q Consensus 146 rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~--------------------------~~~g 195 (774)
+|++|.+.. ..||...++..|+++|+++||+|.|+++..+...... ...+
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 467777653 4799999999999999999999999997654322110 1123
Q ss_pred ccEEEcccch---------------------------hHHHHhhh--cCccEEEEcCCchhHHHHHHHhCC-----CCCC
Q 004092 196 VPVAILQTGR---------------------------EKASFVNW--LNYDGILVNSLEAKVVISNIMQEP-----FKSL 241 (774)
Q Consensus 196 i~i~~l~~~~---------------------------~l~~~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~-----~~~i 241 (774)
++++.+.... ....++.. .+||+||+|.+.+. .+..++... +.++
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~-~~~~~l~~~~~~~~~~~~ 159 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTG-LVPALLKEKYADPFFKNI 159 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHH-HHHHHHHHhhccccCCCC
Confidence 4443332111 01122333 68999999998873 544444332 2578
Q ss_pred CEEEEEcCchhhhh-----HHHhhhh----------hhhHHHHHHHHHHHhccEEEccCCcc-hhhcc-----------c
Q 004092 242 PLVWTIHEGTLATR-----ARNYASS----------GQLELLNDWKKVFNRATVVVFPDYVL-PMMYS-----------A 294 (774)
Q Consensus 242 pvI~tiHg~~l~~~-----~~k~~~~----------~~~~li~~~~~~~~~a~~vv~ps~~~-~~i~~-----------~ 294 (774)
|+|+|+|+...... ....... .....+...+..+..++.+...+... ..+.. .
T Consensus 160 ~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~ 239 (476)
T cd03791 160 KTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLR 239 (476)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHH
Confidence 99999997322110 0000000 00011233344566666655554431 11111 1
Q ss_pred CCCCCEEEeCCCCCCcccccccCch----------------hhHHHHHHhCCC--CCCEEEEEEecccccccccccHHHH
Q 004092 295 FDAGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFK--PDDLVIAIVGTQFMYRGLWLEHALI 356 (774)
Q Consensus 295 v~~~ki~vIpg~gvd~~~~~~~~~~----------------~k~~lR~~lgl~--~~~~vIl~vGsrl~~~KgiKg~~lL 356 (774)
....++.+|+| |+|...+.+.... .+..+++++|++ ++.++++++| |+.+. ||++.+
T Consensus 240 ~~~~ki~~I~N-Gid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vG-rl~~~---Kg~~~l 314 (476)
T cd03791 240 ARAGKLSGILN-GIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVG-RLTEQ---KGIDLL 314 (476)
T ss_pred hccCCeEEEeC-CCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEe-ecccc---ccHHHH
Confidence 23468999994 8876544432211 145678899985 7788999999 88888 999999
Q ss_pred HHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEc-cCc-ccHHHHHHHcCEEEEcCcc
Q 004092 357 LRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHM-AAE-GDVDSVLNTADVVIYGSFL 433 (774)
Q Consensus 357 LeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~fl-G~~-~dl~~~l~aaDI~V~PS~~ 433 (774)
++|+..+.++. ++|+|+| |+ ..+.+.++++++++ .+ +|.+. |+. +.+..+|+.||++|+||.+
T Consensus 315 i~a~~~l~~~~---------~~lvi~G~g~--~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~~~~~~~aDv~l~pS~~ 380 (476)
T cd03791 315 LEALPELLELG---------GQLVILGSGD--PEYEEALRELAARY--PG-RVAVLIGYDEALAHLIYAGADFFLMPSRF 380 (476)
T ss_pred HHHHHHHHHcC---------cEEEEEecCC--HHHHHHHHHHHHhC--CC-cEEEEEeCCHHHHHHHHHhCCEEECCCCC
Confidence 99999987642 8999999 74 34557778888755 44 56654 555 4557899999999999999
Q ss_pred CcCCccHHHHHHHHcCCCEEEcCCcccccccccCc------cEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 004092 434 EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRV------NGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRR 507 (774)
Q Consensus 434 E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~------~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~ 507 (774)
| +||++++|||+||+|||+++.||+.|+|.++. +|+++++.|+++++++|.++++.-.-++.+.+|++++.+
T Consensus 381 E--~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~ 458 (476)
T cd03791 381 E--PCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMA 458 (476)
T ss_pred C--CCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc
Confidence 8 89999999999999999999999999999987 999999999999999999988630005666677776643
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 004092 508 SVKNLMALETIEGYAMLLE 526 (774)
Q Consensus 508 ~ak~fs~~~~a~~y~~L~e 526 (774)
+.|+|+.++++|.++|+
T Consensus 459 --~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 459 --QDFSWDRSAKEYLELYR 475 (476)
T ss_pred --cCCChHHHHHHHHHHHh
Confidence 46999999999999986
No 37
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.8e-30 Score=298.00 Aligned_cols=284 Identities=16% Similarity=0.186 Sum_probs=224.3
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHh---------hhhhhhHHH-HHHHHHHHhccEEEc
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNY---------ASSGQLELL-NDWKKVFNRATVVVF 283 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~---------~~~~~~~li-~~~~~~~~~a~~vv~ 283 (774)
.++|+||+|+....+.+..++. +..++|+|+|.||.....+.... .......++ ...+..+..++.++.
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~-~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~ 250 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAK-ARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITT 250 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHH-HHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEe
Confidence 5899999998754345555443 35689999999983221111111 111111111 223446677887777
Q ss_pred cCCcch--hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHH
Q 004092 284 PDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (774)
Q Consensus 284 ps~~~~--~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~ 361 (774)
.+.... ....+.+.+++.+||| |+|...+...... ...++.++|+++| ++.+. ||++.+++|++
T Consensus 251 ~s~~~~~~~~~~g~~~~ki~vIpN-gid~~~f~~~~~~---------~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~ 316 (475)
T cd03813 251 LYEGNRERQIEDGADPEKIRVIPN-GIDPERFAPARRA---------RPEKEPPVVGLIG-RVVPI---KDIKTFIRAAA 316 (475)
T ss_pred cCHHHHHHHHHcCCCHHHeEEeCC-CcCHHHcCCcccc---------ccCCCCcEEEEEe-ccccc---cCHHHHHHHHH
Confidence 655522 2334566678999994 8887443332110 2345677999999 88888 99999999999
Q ss_pred HchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccH
Q 004092 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPE 440 (774)
Q Consensus 362 ~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~ 440 (774)
.+.++.|+ ++++|+| |+..+.|.+.++++++++++.+ +|.|+| .+++.++|+++|++|+||..| |+|+
T Consensus 317 ~l~~~~p~-------~~l~IvG~g~~~~~~~~e~~~li~~l~l~~-~V~f~G-~~~v~~~l~~aDv~vlpS~~E--g~p~ 385 (475)
T cd03813 317 IVRKKIPD-------AEGWVIGPTDEDPEYAEECRELVESLGLED-NVKFTG-FQNVKEYLPKLDVLVLTSISE--GQPL 385 (475)
T ss_pred HHHHhCCC-------eEEEEECCCCcChHHHHHHHHHHHHhCCCC-eEEEcC-CccHHHHHHhCCEEEeCchhh--cCCh
Confidence 99988888 9999999 7767788899999999999998 999999 779999999999999999988 8999
Q ss_pred HHHHHHHcCCCEEEcCCccccccccc------CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hcC
Q 004092 441 ILVKALCFRKPIIAPDLSNIRKYVDD------RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-NLM 513 (774)
Q Consensus 441 ~llEAMA~G~PVIatd~ggi~EiV~d------g~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak-~fs 513 (774)
+++||||||+|||+|+.|+++|++.+ |.+|+++++.|+++++++|.++++| ++.+++|+++|++.++ .|+
T Consensus 386 ~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~---~~~~~~~~~~a~~~v~~~~s 462 (475)
T cd03813 386 VILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD---PELRRAMGEAGRKRVERYYT 462 (475)
T ss_pred HHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999988 6789999999999999999999999 9999999999999994 589
Q ss_pred HHHHHHHHHHHHH
Q 004092 514 ALETIEGYAMLLE 526 (774)
Q Consensus 514 ~~~~a~~y~~L~e 526 (774)
|+.++++|.++|+
T Consensus 463 ~~~~~~~y~~lY~ 475 (475)
T cd03813 463 LERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999984
No 38
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=2.1e-29 Score=273.73 Aligned_cols=352 Identities=18% Similarity=0.219 Sum_probs=252.9
Q ss_pred eEEEEecCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEE------------cccchhHHHHh
Q 004092 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI------------LQTGREKASFV 211 (774)
Q Consensus 146 rialV~~~L--~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~------------l~~~~~l~~~i 211 (774)
||+++.... ..||.+..+..+++.|.+.||+|++++..............+.... ......+...+
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 466776655 4589999999999999999999999998654322111111111100 11112233346
Q ss_pred hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhH-HHhhhhhhhHHH--HHHHHHHHhccEEEccCCcc
Q 004092 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA-RNYASSGQLELL--NDWKKVFNRATVVVFPDYVL 288 (774)
Q Consensus 212 ~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~-~k~~~~~~~~li--~~~~~~~~~a~~vv~ps~~~ 288 (774)
+..+||+||++++........... +..++|+|+++|+....+.. ............ ...+..+..++.+.+++...
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~ 159 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVA-RKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKI 159 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHH-HHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHH
Confidence 678999999998765333333333 35679999999963221100 000000011111 23344566778777776653
Q ss_pred hhhcccC-CCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 004092 289 PMMYSAF-DAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (774)
Q Consensus 289 ~~i~~~v-~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~ 367 (774)
....... ...++.++| +++|...+. .......++.++..+++++++++| ++.+. ||++.+++|+..+.++.
T Consensus 160 ~~~~~~~~~~~~~~vi~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~G-~~~~~---k~~~~l~~~~~~~~~~~ 231 (374)
T cd03817 160 ADLLREYGVKRPIEVIP-TGIDLDRFE---PVDGDDERRKLGIPEDEPVLLYVG-RLAKE---KNIDFLIRAFARLLKEE 231 (374)
T ss_pred HHHHHhcCCCCceEEcC-CccchhccC---ccchhHHHHhcCCCCCCeEEEEEe-eeecc---cCHHHHHHHHHHHHHhC
Confidence 3222222 234578888 477763332 222233366677788888999999 77777 99999999999998877
Q ss_pred ccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHH
Q 004092 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (774)
Q Consensus 368 p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llE 444 (774)
++ ++++++| |+.. +.+++.++++++.+ +|.++|++ +++..+|+.||++++||..| ++|++++|
T Consensus 232 ~~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e--~~~~~~~E 297 (374)
T cd03817 232 PD-------VKLVIVGDGPER----EELEELARELGLAD-RVIFTGFVPREELPDYYKAADLFVFASTTE--TQGLVLLE 297 (374)
T ss_pred CC-------eEEEEEeCCchH----HHHHHHHHHcCCCC-cEEEeccCChHHHHHHHHHcCEEEeccccc--CcChHHHH
Confidence 77 9999999 6654 67888888889888 99999987 78999999999999999988 89999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004092 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (774)
Q Consensus 445 AMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L 524 (774)
||+||+|||+++.++..+++.++.+|+++++++. +++++|.+++++ ++.+++|++++++.++++. +++++.++
T Consensus 298 a~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 370 (374)
T cd03817 298 AMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQD---PELRRRLSKNAEESAEKFS---FAKKVEKL 370 (374)
T ss_pred HHHcCCcEEEeCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999999999999999999999999998877 999999999999 9999999999999997766 55666666
Q ss_pred HHH
Q 004092 525 LEN 527 (774)
Q Consensus 525 ~e~ 527 (774)
|++
T Consensus 371 ~~~ 373 (374)
T cd03817 371 YEE 373 (374)
T ss_pred Hhc
Confidence 654
No 39
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=5.6e-30 Score=283.32 Aligned_cols=335 Identities=14% Similarity=0.125 Sum_probs=233.0
Q ss_pred CeEEEEecCC-CCChHHHHHHHHHHHHHHc--CCeEEEEEcCCCcchhhhhhcC-------ccEEEc---ccchhHHHHh
Q 004092 145 PQLALVFPDL-LIDPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIG-------VPVAIL---QTGREKASFV 211 (774)
Q Consensus 145 ~rialV~~~L-~~GG~e~~v~~Lak~L~~~--G~eV~V~t~~~~~~~~~~~~~g-------i~i~~l---~~~~~l~~~i 211 (774)
+||+++.+.+ ..||+|+++.++++.|.+. ||++.+++.............+ +.+..+ .....+.+.+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL 80 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence 4788888876 4699999999999999999 8999988875543222222222 111111 1123355667
Q ss_pred hhcCccEEEEcCCchhHHHHHHHhCC-CCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc--
Q 004092 212 NWLNYDGILVNSLEAKVVISNIMQEP-FKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-- 288 (774)
Q Consensus 212 ~~~~~DIIhvhs~~~~~~l~~Ll~~~-~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~-- 288 (774)
+..+||+||+|++... .+..++... ....+++.+.|........ + . ...+..++.+...+...
T Consensus 81 ~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~--~------~-----~~~~~~~d~~i~~S~~~~~ 146 (359)
T PRK09922 81 KETQPDIVICIDVISC-LYANKARKKSGKQFKIFSWPHFSLDHKKH--A------E-----CKKITCADYHLAISSGIKE 146 (359)
T ss_pred HhcCCCEEEEcCHHHH-HHHHHHHHHhCCCCeEEEEecCcccccch--h------h-----hhhhhcCCEEEEcCHHHHH
Confidence 7889999999987653 443433221 2224566677742111000 0 0 01123455555554442
Q ss_pred hhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcc
Q 004092 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (774)
Q Consensus 289 ~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p 368 (774)
.+...+++.+++.+||+ |+|...+.. .. ....++++++++| ++.. ++.||++.+++|+..+..
T Consensus 147 ~~~~~~~~~~ki~vi~N-~id~~~~~~--~~---------~~~~~~~~i~~~G-rl~~-~~~k~~~~l~~a~~~~~~--- 209 (359)
T PRK09922 147 QMMARGISAQRISVIYN-PVEIKTIII--PP---------PERDKPAVFLYVG-RLKF-EGQKNVKELFDGLSQTTG--- 209 (359)
T ss_pred HHHHcCCCHHHEEEEcC-CCCHHHccC--CC---------cccCCCcEEEEEE-EEec-ccCcCHHHHHHHHHhhCC---
Confidence 22233455678899984 777522111 10 0123467899999 7653 235999999999988743
Q ss_pred cCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcc----cHHHHHHHcCEEEEcCccCcCCccHHHH
Q 004092 369 VENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG----DVDSVLNTADVVIYGSFLEEQTFPEILV 443 (774)
Q Consensus 369 ~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~----dl~~~l~aaDI~V~PS~~E~qGfp~~ll 443 (774)
+ ++|+|+| |+.. +.+++.++++++++ +|.|+|+++ ++.++|+.||++|+||.+| |||++++
T Consensus 210 ~-------~~l~ivG~g~~~----~~l~~~~~~~~l~~-~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~E--gf~~~~l 275 (359)
T PRK09922 210 E-------WQLHIIGDGSDF----EKCKAYSRELGIEQ-RIIWHGWQSQPWEVVQQKIKNVSALLLTSKFE--GFPMTLL 275 (359)
T ss_pred C-------eEEEEEeCCccH----HHHHHHHHHcCCCC-eEEEecccCCcHHHHHHHHhcCcEEEECCccc--CcChHHH
Confidence 4 8999999 8765 77889999999998 999999763 5677888899999999998 8999999
Q ss_pred HHHHcCCCEEEcC-CcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004092 444 KALCFRKPIIAPD-LSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (774)
Q Consensus 444 EAMA~G~PVIatd-~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~ 522 (774)
||||||+|||+|+ .+|..|+|.++.+|++++++|+++++++|.+++++ ++.+. ..+..+.+++|+.+...+++.
T Consensus 276 EAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~ 350 (359)
T PRK09922 276 EAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISG---EVKYQ--HDAIPNSIERFYEVLYFKNLN 350 (359)
T ss_pred HHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhC---cccCC--HHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999 89999999999999999999999999999999999 76431 122233346677777888888
Q ss_pred HHHHHHh
Q 004092 523 MLLENVL 529 (774)
Q Consensus 523 ~L~e~ll 529 (774)
.+|+++.
T Consensus 351 ~~~~~~~ 357 (359)
T PRK09922 351 NALFSKL 357 (359)
T ss_pred HHHHHHh
Confidence 8877754
No 40
>PLN00142 sucrose synthase
Probab=99.97 E-value=6.6e-30 Score=300.29 Aligned_cols=292 Identities=11% Similarity=0.076 Sum_probs=209.2
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCch--------h-------hhh------HHHhhhhhhhHHHHHHH
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT--------L-------ATR------ARNYASSGQLELLNDWK 272 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~--------l-------~~~------~~k~~~~~~~~li~~~~ 272 (774)
..||+||.|.+.++ +++.+++. ..++|.|.|.|.-. . .++ .+......++.+++...
T Consensus 407 ~~PDlIHaHYwdsg-~vA~~La~-~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIasT~ 484 (815)
T PLN00142 407 GKPDLIIGNYSDGN-LVASLLAH-KLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIITSTY 484 (815)
T ss_pred CCCCEEEECCccHH-HHHHHHHH-HhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHhCcH
Confidence 35999999999884 77777654 67899999999410 0 000 12222222333332221
Q ss_pred HHHHhc-cEE-EccCC---c---chhhcccCC--CCCEEEeCCCCCCcccccccCchh-h---------------HHHHH
Q 004092 273 KVFNRA-TVV-VFPDY---V---LPMMYSAFD--AGNYYVIPGSPAKAWEADTNMDLY-N---------------DTVRV 326 (774)
Q Consensus 273 ~~~~~a-~~v-v~ps~---~---~~~i~~~v~--~~ki~vIpg~gvd~~~~~~~~~~~-k---------------~~lR~ 326 (774)
...... +.+ .+-++ . +..+.++++ ..++.+|| +|+|...|.++.... + ...++
T Consensus 485 qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVp-pGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e 563 (815)
T PLN00142 485 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVS-PGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDE 563 (815)
T ss_pred HHHhcccchhhhhhcccccccchhhhhhccccccccCeeEEC-CCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHH
Confidence 111000 000 00010 0 122233443 45888998 588886665544321 1 11234
Q ss_pred HhCC--CCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCC--Cc------hHHHHH
Q 004092 327 KMGF--KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDST--SN------YSVVIE 395 (774)
Q Consensus 327 ~lgl--~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~--e~------Y~~~L~ 395 (774)
.+|+ ++++++|+++| |+.+. ||++.+++|++.+.+..++ ++|+|+| |... .. +...+.
T Consensus 564 ~lg~l~~~~kpvIl~VG-RL~~~---KGid~LIeA~a~l~~l~~~-------~~LVIVGgg~d~~~s~d~ee~~el~~L~ 632 (815)
T PLN00142 564 HIGYLKDRKKPIIFSMA-RLDRV---KNLTGLVEWYGKNKRLREL-------VNLVVVGGFIDPSKSKDREEIAEIKKMH 632 (815)
T ss_pred HhCCccCCCCcEEEEEe-cCccc---CCHHHHHHHHHHHHHhCCC-------cEEEEEECCccccccccHHHHHHHHHHH
Confidence 5665 45667999999 99998 9999999999988766666 9999999 4211 11 124577
Q ss_pred HHHHHcCCCCccEEEccCc------ccHHHHHH-HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCc
Q 004092 396 AIAHNLHYPLGVVKHMAAE------GDVDSVLN-TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRV 468 (774)
Q Consensus 396 ~la~~lgL~~~~V~flG~~------~dl~~~l~-aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~ 468 (774)
++++++++.+ +|.|+|.. +++..+++ ++|+||+||.+| |||++++||||||+|||+|+.||+.|+|.||+
T Consensus 633 ~La~~lgL~~-~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~E--gFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~ 709 (815)
T PLN00142 633 SLIEKYNLKG-QFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYE--AFGLTVVEAMTCGLPTFATCQGGPAEIIVDGV 709 (815)
T ss_pred HHHHHcCCCC-cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCccc--CCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCC
Confidence 8899999998 99999853 34666666 479999999999 89999999999999999999999999999999
Q ss_pred cEEEEcCCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 004092 469 NGYLFPKENIKALTHIILQVI----TNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (774)
Q Consensus 469 ~G~Lv~~~d~e~La~aI~~Ll----~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~ 525 (774)
+|+++++.|+++++++|..++ .| ++.+++|+++|++.+ ++|+|+.+++++.++.
T Consensus 710 tG~LV~P~D~eaLA~aI~~lLekLl~D---p~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 710 SGFHIDPYHGDEAANKIADFFEKCKED---PSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999997654 68 899999999999999 6799999999999977
No 41
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.6e-29 Score=275.85 Aligned_cols=336 Identities=16% Similarity=0.154 Sum_probs=240.8
Q ss_pred eEEEEecCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEccc---------chhHHHH--hh
Q 004092 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT---------GREKASF--VN 212 (774)
Q Consensus 146 rialV~~~L~--~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~---------~~~l~~~--i~ 212 (774)
||++|.+... .||.++++..+++.|.++||+|+|++.............++++..+.. ...+... +.
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKL 80 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhc
Confidence 4677776654 699999999999999999999999998764433222222222222211 1111111 34
Q ss_pred hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhh-
Q 004092 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMM- 291 (774)
Q Consensus 213 ~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i- 291 (774)
..++|+||+|++........... ..++|+++++|+...... ..... .-......+..++.+.+.+......
T Consensus 81 ~~~~Dii~~~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~---~~~~~---~~~~~~~~~~~~d~vi~~s~~~~~~~ 152 (357)
T cd03795 81 AKKADVIHLHFPNPLADLALLLL--PRKKPVVVHWHSDIVKQK---LLLKL---YRPLQRRFLRRADAIVATSPNYAETS 152 (357)
T ss_pred CCCCCEEEEecCcchHHHHHHHh--ccCceEEEEEcChhhccc---hhhhh---hhHHHHHHHHhcCEEEeCcHHHHHHH
Confidence 67899999998776433333332 256899999996432211 00000 0111223556677776665553221
Q ss_pred --cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 004092 292 --YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (774)
Q Consensus 292 --~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~ 369 (774)
.... ..++.++|+ |+|...+...... . ........+.++++++| ++.+. ||++.+++|++++. +
T Consensus 153 ~~~~~~-~~~~~~i~~-gi~~~~~~~~~~~-~---~~~~~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~----~ 218 (357)
T cd03795 153 PVLRRF-RDKVRVIPL-GLDPARYPRPDAL-E---EAIWRRAAGRPFFLFVG-RLVYY---KGLDVLLEAAAALP----D 218 (357)
T ss_pred HHhcCC-ccceEEecC-CCChhhcCCcchh-h---hHhhcCCCCCcEEEEec-ccccc---cCHHHHHHHHHhcc----C
Confidence 1122 267888884 7776332221110 1 12234556778999999 78887 99999999999987 4
Q ss_pred CCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHH
Q 004092 370 ENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKAL 446 (774)
Q Consensus 370 ~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAM 446 (774)
++++|+| |+.. +.+++.++++++.+ +|.|+|++ +++..+|+.||++++||....+|+|++++|||
T Consensus 219 -------~~l~i~G~g~~~----~~~~~~~~~~~~~~-~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~ 286 (357)
T cd03795 219 -------APLVIVGEGPLE----AELEALAAALGLLD-RVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAM 286 (357)
T ss_pred -------cEEEEEeCChhH----HHHHHHHHhcCCcc-eEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHH
Confidence 8999999 7654 67788888889988 99999987 56899999999999999642228999999999
Q ss_pred HcCCCEEEcCCccccccccc-CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHH
Q 004092 447 CFRKPIIAPDLSNIRKYVDD-RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETI 518 (774)
Q Consensus 447 A~G~PVIatd~ggi~EiV~d-g~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a 518 (774)
+||+|||+|+.++..+.+.+ +.+|++++++|+++++++|.++++| ++.+++|+++|++.+ ++|++++++
T Consensus 287 ~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 287 AFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLED---PELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred HcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHhcchHhhC
Confidence 99999999999999998886 8899999999999999999999999 999999999999999 679998864
No 42
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=2.7e-29 Score=275.02 Aligned_cols=340 Identities=13% Similarity=0.128 Sum_probs=234.5
Q ss_pred eEEEEecC---CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccch---------hHHHHh--
Q 004092 146 QLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR---------EKASFV-- 211 (774)
Q Consensus 146 rialV~~~---L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~---------~l~~~i-- 211 (774)
||++|... -..||+++++.++++.|.++||+|+|++.............++++..++... .+....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILHA 80 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcCCCCccchhhhHHHHHHHHHH
Confidence 46777553 2579999999999999999999999999865433222233455554443321 011111
Q ss_pred --hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHH-HHHHHHhccEEEccCCcc
Q 004092 212 --NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLND-WKKVFNRATVVVFPDYVL 288 (774)
Q Consensus 212 --~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~-~~~~~~~a~~vv~ps~~~ 288 (774)
...++|+||...+... ....++ . ..++|+++++|+..... ..+. .....+... ....+..++.+.+.+...
T Consensus 81 ~~~~~~~~~i~~~~~~~~-~~~~~~-~-~~~~~~v~~~h~~~~~~--~~~~-~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 154 (363)
T cd04955 81 LFVKRDIDHVHALGPAIA-PFLPLL-R-LKGKKVVVNMDGLEWKR--AKWG-RPAKRYLKFGEKLAVKFADRLIADSPGI 154 (363)
T ss_pred HhccCCeEEEEecCccHH-HHHHHH-H-hcCCCEEEEccCcceee--cccc-cchhHHHHHHHHHHHhhccEEEeCCHHH
Confidence 1344555555444431 222223 2 34789999999743221 0010 011111111 223455677777766653
Q ss_pred hhhc-ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 004092 289 PMMY-SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (774)
Q Consensus 289 ~~i~-~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~ 367 (774)
.... ..+.... .+||+ |+|...+.. ....+.++++.++. .++++| ++.+. ||++.+++|++.+..
T Consensus 155 ~~~~~~~~~~~~-~~i~n-gv~~~~~~~-----~~~~~~~~~~~~~~-~i~~~G-~~~~~---Kg~~~li~a~~~l~~-- 220 (363)
T cd04955 155 KEYLKEKYGRDS-TYIPY-GADHVVSSE-----EDEILKKYGLEPGR-YYLLVG-RIVPE---NNIDDLIEAFSKSNS-- 220 (363)
T ss_pred HHHHHHhcCCCC-eeeCC-CcChhhcch-----hhhhHHhcCCCCCc-EEEEEe-ccccc---CCHHHHHHHHHhhcc--
Confidence 3222 2233233 77884 777632221 12334456666554 678999 88888 999999999998864
Q ss_pred ccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCcc-CcCCccHHHH
Q 004092 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL-EEQTFPEILV 443 (774)
Q Consensus 368 p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~-E~qGfp~~ll 443 (774)
+ ++|+|+| |+....|.+.++ +.+++.+ +|+|+|++ +++..+|..||++++||.. | |||++++
T Consensus 221 -~-------~~l~ivG~~~~~~~~~~~~~---~~~~~~~-~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e--~~~~~~~ 286 (363)
T cd04955 221 -G-------KKLVIVGNADHNTPYGKLLK---EKAAADP-RIIFVGPIYDQELLELLRYAALFYLHGHSVG--GTNPSLL 286 (363)
T ss_pred -C-------ceEEEEcCCCCcchHHHHHH---HHhCCCC-cEEEccccChHHHHHHHHhCCEEEeCCccCC--CCChHHH
Confidence 4 8999999 766544443322 2567777 89999987 6788999999999999988 6 8999999
Q ss_pred HHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hcCHHHHHHHHH
Q 004092 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-NLMALETIEGYA 522 (774)
Q Consensus 444 EAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak-~fs~~~~a~~y~ 522 (774)
|||+||+|||+|+.++..|++.+ +|.+++++|. ++++|.+++++ ++.+.++++++++.++ +|+|+.++++|.
T Consensus 287 EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~--l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 359 (363)
T cd04955 287 EAMAYGCPVLASDNPFNREVLGD--KAIYFKVGDD--LASLLEELEAD---PEEVSAMAKAARERIREKYTWEKIADQYE 359 (363)
T ss_pred HHHHcCCCEEEecCCccceeecC--CeeEecCchH--HHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999977 7899987665 99999999999 9999999999999984 699999999999
Q ss_pred HHHH
Q 004092 523 MLLE 526 (774)
Q Consensus 523 ~L~e 526 (774)
++|+
T Consensus 360 ~~y~ 363 (363)
T cd04955 360 ELYK 363 (363)
T ss_pred HHhC
Confidence 9874
No 43
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=1.6e-29 Score=271.77 Aligned_cols=352 Identities=20% Similarity=0.256 Sum_probs=257.3
Q ss_pred eEEEEecCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEE-------------EcccchhHHHH
Q 004092 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVA-------------ILQTGREKASF 210 (774)
Q Consensus 146 rialV~~~L~--~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~-------------~l~~~~~l~~~ 210 (774)
||+++.+... .||.+.++..+++.|.+.||+|.+++.................. .......+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 4666666553 38999999999999999999999999876442222111111110 00111223445
Q ss_pred hhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchh
Q 004092 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM 290 (774)
Q Consensus 211 i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~ 290 (774)
++..++|+||+++........ +. ....++|+|+++|+......... ...............+..++.+.+.+.....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~-~~-~~~~~~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 157 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAA-LA-ARLLGIPLVLTVHGLEFGRPGNE-LGLLLKLARALERRALRRADRIIAVSEATRE 157 (374)
T ss_pred hhhcCCcEEEEechhHHHHHH-HH-HHhcCCcEEEEeccchhhccccc-hhHHHHHHHHHHHHHHHhCCEEEEecHHHHH
Confidence 666899999999988743322 22 23567999999997433211110 0000011112233355667777766655322
Q ss_pred -hcccCC--CCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 004092 291 -MYSAFD--AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (774)
Q Consensus 291 -i~~~v~--~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~ 367 (774)
...... ..++.++|+ |++...+.... ...+.......+.+.++++| ++.+. ||++.+++|+..+.+++
T Consensus 158 ~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~g-~~~~~---k~~~~~i~~~~~~~~~~ 228 (374)
T cd03801 158 ELRELGGVPPEKITVIPN-GVDTERFRPAP----RAARRRLGIPEDEPVILFVG-RLVPR---KGVDLLLEALAKLRKEY 228 (374)
T ss_pred HHHhcCCCCCCcEEEecC-cccccccCccc----hHHHhhcCCcCCCeEEEEec-chhhh---cCHHHHHHHHHHHhhhc
Confidence 222222 257888884 66663322211 22334555667778999999 77777 99999999999999887
Q ss_pred ccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHH
Q 004092 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (774)
Q Consensus 368 p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llE 444 (774)
++ ++|+++| ++.. ..+++.++++++.+ +|.+.|++ +++..+|+.||++++|+..| |+|++++|
T Consensus 229 ~~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~di~i~~~~~~--~~~~~~~E 294 (374)
T cd03801 229 PD-------VRLVIVGDGPLR----EELEALAAELGLGD-RVTFLGFVPDEDLPALYAAADVFVLPSLYE--GFGLVLLE 294 (374)
T ss_pred CC-------eEEEEEeCcHHH----HHHHHHHHHhCCCc-ceEEEeccChhhHHHHHHhcCEEEecchhc--cccchHHH
Confidence 77 9999999 5443 67778888888988 99999988 89999999999999999997 89999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 004092 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (774)
Q Consensus 445 AMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~ 523 (774)
||++|+|||+++.++..+++.++.+|+++++.|+++++++|.+++++ ++.+.+|++++++.+ ++|+|+++++.+.+
T Consensus 295 a~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (374)
T cd03801 295 AMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDD---PELRRRLGEAARERVAERFSWDRVAARTEE 371 (374)
T ss_pred HHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999988999999999999999999999999 999999999999777 78999999999998
Q ss_pred HHH
Q 004092 524 LLE 526 (774)
Q Consensus 524 L~e 526 (774)
+|+
T Consensus 372 ~~~ 374 (374)
T cd03801 372 VYY 374 (374)
T ss_pred hhC
Confidence 873
No 44
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=1.1e-29 Score=276.81 Aligned_cols=331 Identities=19% Similarity=0.223 Sum_probs=247.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh---hhcCccEEE-------cccchhHHHHhhhcC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW---RNIGVPVAI-------LQTGREKASFVNWLN 215 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~---~~~gi~i~~-------l~~~~~l~~~i~~~~ 215 (774)
||+++++.+..+ .+..+.++++.|.++||+|+|++.......... ......+.. ......+...++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578888887555 889999999999999999999998654322110 001101110 011112233345589
Q ss_pred ccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhh-cc-
Q 004092 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMM-YS- 293 (774)
Q Consensus 216 ~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i-~~- 293 (774)
+|+||+|+......+..+.. +..++|+++++|+......... ...+..+..++.+.+++...... ..
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~vi~~s~~~~~~l~~~ 148 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLAS-RLGGIPYSFTAHGKDIFRSPDA----------IDLDEKLARADFVVAISEYNRQQLIRL 148 (355)
T ss_pred CCEEEECCCCchHHHHHHHH-HhcCCCEEEEEecccccccCch----------HHHHHHHhhCCEEEECCHHHHHHHHHh
Confidence 99999998765334444443 3457899999997433211100 12333455677776666553222 22
Q ss_pred -cCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 004092 294 -AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (774)
Q Consensus 294 -~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~ 372 (774)
+....++.++|+ ++|...+.... .....+.+.++++| ++.+. ||++.+++|+..+.++.++
T Consensus 149 ~~~~~~~~~vi~~-~~d~~~~~~~~----------~~~~~~~~~i~~~g-~~~~~---k~~~~l~~~~~~l~~~~~~--- 210 (355)
T cd03799 149 LGCDPDKIHVVHC-GVDLERFPPRP----------PPPPGEPLRILSVG-RLVEK---KGLDYLLEALALLKDRGID--- 210 (355)
T ss_pred cCCCcccEEEEeC-CcCHHHcCCcc----------ccccCCCeEEEEEe-eeccc---cCHHHHHHHHHHHhhcCCC---
Confidence 355678899984 77753222111 12345567899999 78887 9999999999999887777
Q ss_pred CCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCcc------CcCCccHHHH
Q 004092 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL------EEQTFPEILV 443 (774)
Q Consensus 373 ~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~------E~qGfp~~ll 443 (774)
++++++| |+.. +.+++.++++++.+ +|.+.|++ +++..+|+.||++++||.. | |+|++++
T Consensus 211 ----~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e--~~~~~~~ 279 (355)
T cd03799 211 ----FRLDIVGDGPLR----DELEALIAELGLED-RVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDRE--GLPVVLM 279 (355)
T ss_pred ----eEEEEEECCccH----HHHHHHHHHcCCCC-eEEECCcCChHHHHHHHHhCCEEEecceecCCCCcc--CccHHHH
Confidence 9999999 7765 67788889889888 89999987 7899999999999999988 7 8999999
Q ss_pred HHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 004092 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (774)
Q Consensus 444 EAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~ 520 (774)
|||+||+|||+++.++.++++.++.+|++++++|+++++++|.+++++ ++.+.+|+++|++.+ ++|+|+.++++
T Consensus 280 Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 280 EAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDD---PELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999999999999999999899999999999999999999999 999999999999999 67999998764
No 45
>PRK14098 glycogen synthase; Provisional
Probab=99.97 E-value=2.1e-29 Score=289.20 Aligned_cols=361 Identities=14% Similarity=0.132 Sum_probs=255.1
Q ss_pred CCCeEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh---h------hh----------------
Q 004092 143 RKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV---W------RN---------------- 193 (774)
Q Consensus 143 rk~rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~---~------~~---------------- 193 (774)
|.++|++|.... ..||..-++..|.++|+++||+|.|+.+..+..... . ..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKV 83 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEE
Confidence 348899988865 479999999999999999999999999854322110 0 00
Q ss_pred -----cCccEEEcc---------cc----------hh----------HHHHhhh--cCccEEEEcCCchhHHHHHHHhCC
Q 004092 194 -----IGVPVAILQ---------TG----------RE----------KASFVNW--LNYDGILVNSLEAKVVISNIMQEP 237 (774)
Q Consensus 194 -----~gi~i~~l~---------~~----------~~----------l~~~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~ 237 (774)
.+++++.+. .+ .. ....+.. .+|||||+|.+.++ .+..++...
T Consensus 84 ~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~-l~~~~l~~~ 162 (489)
T PRK14098 84 TALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAG-LVPLLLKTV 162 (489)
T ss_pred ecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHH-HHHHHHHHH
Confidence 012222111 00 00 0111222 47999999998773 555544321
Q ss_pred ------CCCCCEEEEEcCchhhh--hHHHhhh----hhh------hHHHHHHHHHHHhccEEEccCCcch-hhcc-----
Q 004092 238 ------FKSLPLVWTIHEGTLAT--RARNYAS----SGQ------LELLNDWKKVFNRATVVVFPDYVLP-MMYS----- 293 (774)
Q Consensus 238 ------~~~ipvI~tiHg~~l~~--~~~k~~~----~~~------~~li~~~~~~~~~a~~vv~ps~~~~-~i~~----- 293 (774)
+.++|+|+|+|+...+. ....+.. ... ...+...+..+..++.++..+.... .+..
T Consensus 163 ~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~ 242 (489)
T PRK14098 163 YADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEA 242 (489)
T ss_pred hhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCC
Confidence 34799999999732110 0000000 000 0112334446677777766655522 1111
Q ss_pred -cCC------CCCEEEeCCCCCCcccccccCch----------------hhHHHHHHhCCCC--CCEEEEEEeccccccc
Q 004092 294 -AFD------AGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP--DDLVIAIVGTQFMYRG 348 (774)
Q Consensus 294 -~v~------~~ki~vIpg~gvd~~~~~~~~~~----------------~k~~lR~~lgl~~--~~~vIl~vGsrl~~~K 348 (774)
+++ ..++.+|+| |+|...+.+.... .+..+++++|++. +.++++++| |+.++
T Consensus 243 ~gl~~~l~~~~~kl~~I~N-GID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vg-Rl~~~- 319 (489)
T PRK14098 243 FGLDKVLEERKMRLHGILN-GIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVII-NFDDF- 319 (489)
T ss_pred cChHHHHHhcCCCeeEEeC-CccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEec-ccccc-
Confidence 222 568999994 8887655433211 1456778889873 567999999 99998
Q ss_pred ccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcC
Q 004092 349 LWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTAD 425 (774)
Q Consensus 349 giKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaD 425 (774)
||++++++|+..+.+. + ++|+|+| |+. .|.+.++++++++ ++ +|.|+|.. +++..+|++||
T Consensus 320 --KG~d~li~a~~~l~~~--~-------~~lvivG~G~~--~~~~~l~~l~~~~--~~-~V~~~g~~~~~~~~~~~a~aD 383 (489)
T PRK14098 320 --QGAELLAESLEKLVEL--D-------IQLVICGSGDK--EYEKRFQDFAEEH--PE-QVSVQTEFTDAFFHLAIAGLD 383 (489)
T ss_pred --CcHHHHHHHHHHHHhc--C-------cEEEEEeCCCH--HHHHHHHHHHHHC--CC-CEEEEEecCHHHHHHHHHhCC
Confidence 9999999999998753 4 8999999 753 3568899999865 45 79999965 45789999999
Q ss_pred EEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccccccc----CccEEEEcCCCHHHHHHHHHHHH---HcCCCcHHH
Q 004092 426 VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD----RVNGYLFPKENIKALTHIILQVI---TNGKISPFA 498 (774)
Q Consensus 426 I~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d----g~~G~Lv~~~d~e~La~aI~~Ll---~d~~~~~~r 498 (774)
++|+||..| +||++.+|||+||+|+|++++||+.|++.+ +.+|+++++.|+++|+++|.+++ +| ++.+
T Consensus 384 i~l~PS~~E--~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~---~~~~ 458 (489)
T PRK14098 384 MLLMPGKIE--SCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHD---EERW 458 (489)
T ss_pred EEEeCCCCC--CchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC---HHHH
Confidence 999999999 899999999999999999999999998864 67899999999999999999865 56 7777
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 499 RNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 499 ~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
++|++++. .++|+|+.++++|.++|+++++
T Consensus 459 ~~~~~~~~--~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 459 EELVLEAM--ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHHh--cCCCChHHHHHHHHHHHHHHhc
Confidence 77776553 3679999999999999999864
No 46
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=1.6e-29 Score=274.11 Aligned_cols=314 Identities=13% Similarity=0.112 Sum_probs=222.0
Q ss_pred CeEEEEecCC------CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCcc----------EEEcccchhHH
Q 004092 145 PQLALVFPDL------LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP----------VAILQTGREKA 208 (774)
Q Consensus 145 ~rialV~~~L------~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~----------i~~l~~~~~l~ 208 (774)
+||++|.+.+ ..||+++++..+++.|.+.||+|++++................ .........+.
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 4788888876 7899999999999999999999999998664322111111000 00011122344
Q ss_pred HHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc
Q 004092 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (774)
Q Consensus 209 ~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~ 288 (774)
..++..+||+||+|+.... .+ . .+..++|+|++.|+........ ........+.++..+...
T Consensus 81 ~~~~~~~~Divh~~~~~~~-~~---~-~~~~~~~~v~~~h~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~ 142 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLP-LP---F-ARPLPVPVVTTLHGPPDPELLK-------------LYYAARPDVPFVSISDAQ 142 (335)
T ss_pred HHHhcCCCCEEEecCcccc-hh---h-hcccCCCEEEEecCCCCcccch-------------HHHhhCcCCeEEEecHHH
Confidence 5567789999999998874 32 2 2356789999999744321111 011112223333333332
Q ss_pred hhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcc
Q 004092 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (774)
Q Consensus 289 ~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p 368 (774)
....... .++.+|| +|+|...+.. .+.++..++++| ++.+. ||++.+++|++..
T Consensus 143 ~~~~~~~--~~~~vi~-ngvd~~~~~~--------------~~~~~~~i~~~G-r~~~~---Kg~~~li~~~~~~----- 196 (335)
T cd03802 143 RRPWPPL--PWVATVH-NGIDLDDYPF--------------RGPKGDYLLFLG-RISPE---KGPHLAIRAARRA----- 196 (335)
T ss_pred Hhhcccc--cccEEec-CCcChhhCCC--------------CCCCCCEEEEEE-eeccc---cCHHHHHHHHHhc-----
Confidence 2211111 6788998 4788743322 123455899999 88888 9999999997653
Q ss_pred cCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcC-CCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHH
Q 004092 369 VENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH-YPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (774)
Q Consensus 369 ~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lg-L~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llE 444 (774)
+ ++|+|+| |+.. +.+.....+.. +.+ +|.|+|++ +++..+|+.+|++|+||...+ |||++++|
T Consensus 197 ~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E-~~~~~~lE 263 (335)
T cd03802 197 G-------IPLKLAGPVSDP----DYFYREIAPELLDGP-DIEYLGEVGGAEKAELLGNARALLFPILWEE-PFGLVMIE 263 (335)
T ss_pred C-------CeEEEEeCCCCH----HHHHHHHHHhcccCC-cEEEeCCCCHHHHHHHHHhCcEEEeCCcccC-CcchHHHH
Confidence 3 8999999 7654 33444444333 456 89999987 567899999999999998532 89999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 004092 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (774)
Q Consensus 445 AMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~ 523 (774)
|||||+|||+++.+|..|++.++.+|+++++ +++++++|.++.+. + .+++++.+ ++|+|+.++++|.+
T Consensus 264 Ama~G~PvI~~~~~~~~e~i~~~~~g~l~~~--~~~l~~~l~~l~~~---~------~~~~~~~~~~~~s~~~~~~~~~~ 332 (335)
T cd03802 264 AMACGTPVIAFRRGAVPEVVEDGVTGFLVDS--VEELAAAVARADRL---D------RAACRRRAERRFSAARMVDDYLA 332 (335)
T ss_pred HHhcCCCEEEeCCCCchhheeCCCcEEEeCC--HHHHHHHHHHHhcc---H------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999985 99999999998765 3 24556666 67999999999999
Q ss_pred HHH
Q 004092 524 LLE 526 (774)
Q Consensus 524 L~e 526 (774)
+|+
T Consensus 333 ~y~ 335 (335)
T cd03802 333 LYR 335 (335)
T ss_pred HhC
Confidence 884
No 47
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=2.2e-29 Score=269.99 Aligned_cols=332 Identities=20% Similarity=0.261 Sum_probs=243.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCc---c--------EEEcccchhHHHHhhhc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGV---P--------VAILQTGREKASFVNWL 214 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi---~--------i~~l~~~~~l~~~i~~~ 214 (774)
||+++++.+..||.+..+..++++|.+.||+|.+++............... . .........+...++..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 578999999899999999999999999999999999866432211111100 0 11111223455667778
Q ss_pred CccEEEEcCC-chhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchh-hc
Q 004092 215 NYDGILVNSL-EAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM-MY 292 (774)
Q Consensus 215 ~~DIIhvhs~-~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~-i~ 292 (774)
+||+||+++. .. ..+..+. ... ++|+|+++|+............ . ......+..++.+.+.+..... ..
T Consensus 81 ~~dii~~~~~~~~-~~~~~~~-~~~-~~~~i~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~d~ii~~s~~~~~~~~ 151 (353)
T cd03811 81 KPDVVISHLTTTP-NVLALLA-ARL-GTKLIVWEHNSLSLELKRKLRL----L--LLIRKLYRRADKIVAVSEGVKEDLL 151 (353)
T ss_pred CCCEEEEcCccch-hHHHHHH-hhc-CCceEEEEcCcchhhhccchhH----H--HHHHhhccccceEEEeccchhhhHH
Confidence 9999999998 33 2333333 323 7899999997433211100000 0 2233455667777776665322 22
Q ss_pred ccC--CCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccC
Q 004092 293 SAF--DAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVE 370 (774)
Q Consensus 293 ~~v--~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~ 370 (774)
... ...++.++|+ |++...+...... .. .++...+.++++++| ++.+. ||++.+++|+..+.+++++
T Consensus 152 ~~~~~~~~~~~vi~~-~~~~~~~~~~~~~---~~--~~~~~~~~~~i~~~g-~~~~~---k~~~~~i~~~~~l~~~~~~- 220 (353)
T cd03811 152 KLLGIPPDKIEVIYN-PIDIEEIRALAEE---PL--ELGIPPDGPVILAVG-RLSPQ---KGFDTLIRAFALLRKEGPD- 220 (353)
T ss_pred HhhcCCccccEEecC-CcChhhcCcccch---hh--hcCCCCCceEEEEEe-cchhh---cChHHHHHHHHHhhhcCCC-
Confidence 222 2578889984 7776333222111 00 345667788999999 77787 9999999999999887777
Q ss_pred CCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcC
Q 004092 371 NESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (774)
Q Consensus 371 ~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G 449 (774)
++|+++| |+.. +.+++.++++++.+ +|.+.|+.+++.++|+.||++|+||..| |+|++++|||++|
T Consensus 221 ------~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~i~ps~~e--~~~~~~~Ea~~~G 287 (353)
T cd03811 221 ------ARLVILGDGPLR----EELEALAKELGLAD-RVHFLGFQSNPYPYLKAADLFVLSSRYE--GFPNVLLEAMALG 287 (353)
T ss_pred ------ceEEEEcCCccH----HHHHHHHHhcCCCc-cEEEecccCCHHHHHHhCCEEEeCcccC--CCCcHHHHHHHhC
Confidence 9999999 7665 66778889999988 9999999999999999999999999998 8999999999999
Q ss_pred CCEEEcCCcccccccccCccEEEEcCCCHHHH---HHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcC
Q 004092 450 KPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL---THIILQVITNGKISPFARNIASIGRRSV-KNLM 513 (774)
Q Consensus 450 ~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~L---a~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs 513 (774)
+|||+|+.++..|++.++.+|++++++|++++ +++|..+.++ ++.++++++++++.+ ++|+
T Consensus 288 ~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 288 TPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLD---PELRERLAAAARERVAREYS 352 (353)
T ss_pred CCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC---hHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 6777777778 888888999777666 5564
No 48
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=1e-28 Score=266.87 Aligned_cols=346 Identities=21% Similarity=0.239 Sum_probs=253.7
Q ss_pred EEEecCCC---CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhc---------Ccc----------EEEcccch
Q 004092 148 ALVFPDLL---IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI---------GVP----------VAILQTGR 205 (774)
Q Consensus 148 alV~~~L~---~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~---------gi~----------i~~l~~~~ 205 (774)
+++.+... .||.+..+..+++.|.+.||+|++++............. ... ........
T Consensus 2 Lii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T cd03798 2 LVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAAR 81 (377)
T ss_pred eEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHH
Confidence 45555444 499999999999999999999999998653322111000 000 00011122
Q ss_pred hHHHHhh--hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEc
Q 004092 206 EKASFVN--WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVF 283 (774)
Q Consensus 206 ~l~~~i~--~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ 283 (774)
.+...+. ..++|+||++.......+...+. ...++|++++.|+.......... ......+..+..++.+.+
T Consensus 82 ~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~------~~~~~~~~~~~~~d~ii~ 154 (377)
T cd03798 82 ALLKLLKLKRFRPDLIHAHFAYPDGFAAALLK-RKLGIPLVVTLHGSDVNLLPRKR------LLRALLRRALRRADAVIA 154 (377)
T ss_pred HHHHHHhcccCCCCEEEEeccchHHHHHHHHH-HhcCCCEEEEeecchhcccCchh------hHHHHHHHHHhcCCeEEe
Confidence 3455566 78999999997766434444443 35668999999974332111100 111223345566777777
Q ss_pred cCCcchhhccc--CCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHH
Q 004092 284 PDYVLPMMYSA--FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (774)
Q Consensus 284 ps~~~~~i~~~--v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~ 361 (774)
.+......... ....++.++|+ ++|...+...... .. ..++...+.+.++++| ++.+. ||++.+++|+.
T Consensus 155 ~s~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~---~~-~~~~~~~~~~~i~~~g-~~~~~---k~~~~li~~~~ 225 (377)
T cd03798 155 VSEALADELKALGIDPEKVTVIPN-GVDTERFSPADRA---EA-RKLGLPEDKKVILFVG-RLVPR---KGIDYLIEALA 225 (377)
T ss_pred CCHHHHHHHHHhcCCCCceEEcCC-CcCcccCCCcchH---HH-HhccCCCCceEEEEec-cCccc---cCHHHHHHHHH
Confidence 66553333222 46678899984 6776333222111 11 3445666788999999 77777 99999999999
Q ss_pred HchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCc
Q 004092 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTF 438 (774)
Q Consensus 362 ~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGf 438 (774)
.+.+++++ ++++|+| |+.. +.+++.++++++.+ +|.+.|++ +++.++|+.||++++||..| |+
T Consensus 226 ~~~~~~~~-------~~l~i~g~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~--~~ 291 (377)
T cd03798 226 RLLKKRPD-------VHLVIVGDGPLR----EALEALAAELGLED-RVTFLGAVPHEEVPAYYAAADVFVLPSLRE--GF 291 (377)
T ss_pred HHHhcCCC-------eEEEEEcCCcch----HHHHHHHHhcCCcc-eEEEeCCCCHHHHHHHHHhcCeeecchhhc--cC
Confidence 99887777 9999999 6655 56778888888888 89999987 67999999999999999997 89
Q ss_pred cHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHH
Q 004092 439 PEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALET 517 (774)
Q Consensus 439 p~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~ 517 (774)
|++++|||+||+|||+++.++..+++.++.+|++++++|+++++++|.+++++ +.. +++.++++.+ ++|+|+.+
T Consensus 292 ~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~--~~~~~~~~~~~~~~s~~~~ 366 (377)
T cd03798 292 GLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLAD---PWL--RLGRAARRRVAERFSWENV 366 (377)
T ss_pred ChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcC---cHH--HHhHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999 766 6777777777 77999999
Q ss_pred HHHHHHHHHHH
Q 004092 518 IEGYAMLLENV 528 (774)
Q Consensus 518 a~~y~~L~e~l 528 (774)
++++.++|+++
T Consensus 367 ~~~~~~~~~~l 377 (377)
T cd03798 367 AERLLELYREV 377 (377)
T ss_pred HHHHHHHHhhC
Confidence 99999998763
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=4.4e-29 Score=270.44 Aligned_cols=326 Identities=20% Similarity=0.204 Sum_probs=229.0
Q ss_pred eEEEEecCC---CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEE----------------------
Q 004092 146 QLALVFPDL---LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI---------------------- 200 (774)
Q Consensus 146 rialV~~~L---~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~---------------------- 200 (774)
||+++.+.. ..||++.++..++++|.++||+|.+++...................
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 466776654 3589999999999999999999999998664322111111111111
Q ss_pred -cccchhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhcc
Q 004092 201 -LQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRAT 279 (774)
Q Consensus 201 -l~~~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~ 279 (774)
......+...++..+||+||++++... ........+..++|+|+++|+............. ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~-~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~--------------~~d 145 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGL-GVSILRAARDRGIPIVLTLHDYWLICPRQGLFKK--------------GGD 145 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccch-HHHHHHHHHhcCCCEEEEEeeeeeecchhhhhcc--------------CCC
Confidence 011223445567789999999987542 2222221234569999999963221111111111 113
Q ss_pred EEEccCCcchhh--cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHH
Q 004092 280 VVVFPDYVLPMM--YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (774)
Q Consensus 280 ~vv~ps~~~~~i--~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLL 357 (774)
.++..+...... .......++.++| +|+|...+..... +.+.++++++++| ++.+. ||++.++
T Consensus 146 ~ii~~s~~~~~~~~~~~~~~~~~~vi~-n~~~~~~~~~~~~----------~~~~~~~~i~~~G-~~~~~---k~~~~li 210 (359)
T cd03823 146 AVIAPSRFLLDRYVANGLFAEKISVIR-NGIDLDRAKRPRR----------APPGGRLRFGFIG-QLTPH---KGVDLLL 210 (359)
T ss_pred EEEEeCHHHHHHHHHcCCCccceEEec-CCcChhhcccccc----------CCCCCceEEEEEe-cCccc---cCHHHHH
Confidence 333333331111 1122246788888 4777633221110 3456778899999 77777 9999999
Q ss_pred HHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCc-c
Q 004092 358 RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSF-L 433 (774)
Q Consensus 358 eA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~-~ 433 (774)
+|++.+.+ ++ ++|+++| ++.... ..... +..+ +|.++|+. +++.++|+.||++++||. .
T Consensus 211 ~~~~~l~~--~~-------~~l~i~G~~~~~~~----~~~~~---~~~~-~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~ 273 (359)
T cd03823 211 EAFKRLPR--GD-------IELVIVGNGLELEE----ESYEL---EGDP-RVEFLGAYPQEEIDDFYAEIDVLVVPSIWP 273 (359)
T ss_pred HHHHHHHh--cC-------cEEEEEcCchhhhH----HHHhh---cCCC-eEEEeCCCCHHHHHHHHHhCCEEEEcCccc
Confidence 99999876 55 9999999 654421 11111 5555 89999987 899999999999999997 5
Q ss_pred CcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcC
Q 004092 434 EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (774)
Q Consensus 434 E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs 513 (774)
| |+|++++|||+||+|||+|+.++..|++.++.+|++++++|+++++++|.++++| ++.+++|++++++..+.
T Consensus 274 e--~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~-- 346 (359)
T cd03823 274 E--NFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDD---PDLLERLRAGIEPPRSI-- 346 (359)
T ss_pred C--CCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC---hHHHHHHHHhHHHhhhH--
Confidence 6 8999999999999999999999999999999899999999999999999999999 99999999998887754
Q ss_pred HHHHHHHHHHHHH
Q 004092 514 ALETIEGYAMLLE 526 (774)
Q Consensus 514 ~~~~a~~y~~L~e 526 (774)
++++++|.++|+
T Consensus 347 -~~~~~~~~~~~~ 358 (359)
T cd03823 347 -EDQAEEYLKLYR 358 (359)
T ss_pred -HHHHHHHHHHhh
Confidence 889999988885
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=7.3e-29 Score=270.09 Aligned_cols=351 Identities=16% Similarity=0.132 Sum_probs=248.0
Q ss_pred eEEEEecCCCC--ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh-------hhcCccEEEcccch-----------
Q 004092 146 QLALVFPDLLI--DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW-------RNIGVPVAILQTGR----------- 205 (774)
Q Consensus 146 rialV~~~L~~--GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~-------~~~gi~i~~l~~~~----------- 205 (774)
||++|.+...+ ||.+..+..++++|.+.||+|++++.......... ...++.+..+....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHH
Confidence 57788887655 89999999999999999999999997653222111 11233332222110
Q ss_pred -------hHHHHh--hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhh-hhhh---hHHHHHHH
Q 004092 206 -------EKASFV--NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYA-SSGQ---LELLNDWK 272 (774)
Q Consensus 206 -------~l~~~i--~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~-~~~~---~~li~~~~ 272 (774)
.....+ +..+||+||++++.....+......+..++|+++++|+........... .... .......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLER 160 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHH
Confidence 011112 3678999999984432233333333355799999999621110000000 0000 11111223
Q ss_pred HHHHhccEEEccCCcchhhc--ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEeccccccccc
Q 004092 273 KVFNRATVVVFPDYVLPMMY--SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (774)
Q Consensus 273 ~~~~~a~~vv~ps~~~~~i~--~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~Kgi 350 (774)
..+..++.+.+.+....... ......++.++|+ +++...+..... ...+.......+..+++++| ++.+.
T Consensus 161 ~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~G-~~~~~--- 232 (394)
T cd03794 161 LIYRRADAIVVISPGMREYLVRRGVPPEKISVIPN-GVDLELFKPPPA---DESLRKELGLDDKFVVLYAG-NIGRA--- 232 (394)
T ss_pred HHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCC-CCCHHHcCCccc---hhhhhhccCCCCcEEEEEec-Ccccc---
Confidence 35667777777666633322 4556678899984 666532222211 11134445567778899999 77777
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEE
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVV 427 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~ 427 (774)
||++.+++|+..+.+. ++ ++++|+| |+.. +.+++.+...++++ |.++|+. +++.++|+.||++
T Consensus 233 k~~~~l~~~~~~l~~~-~~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~--v~~~g~~~~~~~~~~~~~~di~ 298 (394)
T cd03794 233 QGLDTLLEAAALLKDR-PD-------IRFLIVGDGPEK----EELKELAKALGLDN--VTFLGRVPKEELPELLAAADVG 298 (394)
T ss_pred cCHHHHHHHHHHHhhc-CC-------eEEEEeCCcccH----HHHHHHHHHcCCCc--EEEeCCCChHHHHHHHHhhCee
Confidence 9999999999999876 66 9999999 7665 56667666667754 9999976 7899999999999
Q ss_pred EEcCccCc---CCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 004092 428 IYGSFLEE---QTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (774)
Q Consensus 428 V~PS~~E~---qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ 504 (774)
++||..|+ .++|++++|||+||+|||+++.++..+++.++.+|++++++|+++++++|.++++| ++.+++|+++
T Consensus 299 i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~ 375 (394)
T cd03794 299 LVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDD---PEERAEMGEN 375 (394)
T ss_pred EEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhC---hHHHHHHHHH
Confidence 99998872 24599999999999999999999999999988899999999999999999999999 9999999999
Q ss_pred HHHHHH-hcCHHHHHHHH
Q 004092 505 GRRSVK-NLMALETIEGY 521 (774)
Q Consensus 505 ar~~ak-~fs~~~~a~~y 521 (774)
+++.++ +|+|+.++++|
T Consensus 376 ~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 376 GRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHhhcHHHHHHhc
Confidence 999995 89999999876
No 51
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=3.9e-29 Score=272.26 Aligned_cols=343 Identities=13% Similarity=0.095 Sum_probs=244.8
Q ss_pred eEEEEecCCCC---ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccE------E------EcccchhHHHH
Q 004092 146 QLALVFPDLLI---DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPV------A------ILQTGREKASF 210 (774)
Q Consensus 146 rialV~~~L~~---GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i------~------~l~~~~~l~~~ 210 (774)
||+++...+.. ||++.++.++++.|.+.|++|++++................. . ...........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 46677777655 999999999999999999999999987643221111110000 0 00000111222
Q ss_pred hhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchh
Q 004092 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM 290 (774)
Q Consensus 211 i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~ 290 (774)
....++|+||+++.... .. +..++|+|+++|+.........................+..++.+++.+.....
T Consensus 81 ~~~~~~Dii~~~~~~~~-~~------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 153 (365)
T cd03809 81 LLLLGLDLLHSPHNTAP-LL------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKR 153 (365)
T ss_pred hhhcCCCeeeecccccC-cc------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHH
Confidence 34478999999998773 22 356799999999732111111111100111122334466677777777655322
Q ss_pred -hc--ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 004092 291 -MY--SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (774)
Q Consensus 291 -i~--~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~ 367 (774)
+. ...+..++.++| ++++...+.. ..... +.......+.++++++| ++.+. ||++.+++|+..+.+..
T Consensus 154 ~~~~~~~~~~~~~~vi~-~~~~~~~~~~---~~~~~-~~~~~~~~~~~~i~~~G-~~~~~---K~~~~~l~~~~~~~~~~ 224 (365)
T cd03809 154 DLLRYLGVPPDKIVVIP-LGVDPRFRPP---PAEAE-VLRALYLLPRPYFLYVG-TIEPR---KNLERLLEAFARLPAKG 224 (365)
T ss_pred HHHHHhCcCHHHEEeec-cccCccccCC---CchHH-HHHHhcCCCCCeEEEeC-CCccc---cCHHHHHHHHHHHHHhc
Confidence 22 223456788998 3666632222 11111 44445566778999999 78888 99999999999999887
Q ss_pred ccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHH
Q 004092 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (774)
Q Consensus 368 p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llE 444 (774)
++ ++++++| +.... ....+..+++++.+ +|.++|++ +++..+|+.||++++||..| |+|++++|
T Consensus 225 ~~-------~~l~i~G~~~~~~---~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e--~~~~~~~E 291 (365)
T cd03809 225 PD-------PKLVIVGKRGWLN---EELLARLRELGLGD-RVRFLGYVSDEELAALYRGARAFVFPSLYE--GFGLPVLE 291 (365)
T ss_pred CC-------CCEEEecCCcccc---HHHHHHHHHcCCCC-eEEECCCCChhHHHHHHhhhhhhcccchhc--cCCCCHHH
Confidence 77 8999999 44332 22333336678888 99999988 88999999999999999998 89999999
Q ss_pred HHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004092 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (774)
Q Consensus 445 AMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~ 522 (774)
||++|+|||+++.+++.|++.+ +|++++++|+++++++|.++++| ++.+.+|++++++.+++|+|+++++.|.
T Consensus 292 a~a~G~pvI~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 292 AMACGTPVIASNISSLPEVAGD--AALYFDPLDPEALAAAIERLLED---PALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HhcCCCcEEecCCCCccceecC--ceeeeCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999999855 68999999999999999999999 9999999999998889999999999875
No 52
>PLN02949 transferase, transferring glycosyl groups
Probab=99.97 E-value=4e-28 Score=276.16 Aligned_cols=359 Identities=14% Similarity=0.077 Sum_probs=241.0
Q ss_pred CCCeEEEEecCCCCC-hHHHHHHHHHHHHHHcCC--eEEEEEcCCCcchh-----hhhhcCccE-------EE-----cc
Q 004092 143 RKPQLALVFPDLLID-PQQLQMVTIAIALREIGY--AIQVYSLEDGRAHE-----VWRNIGVPV-------AI-----LQ 202 (774)
Q Consensus 143 rk~rialV~~~L~~G-G~e~~v~~Lak~L~~~G~--eV~V~t~~~~~~~~-----~~~~~gi~i-------~~-----l~ 202 (774)
+|+++++++|+++.| |+|+++...+.+|++.|+ +|.++|...+.... ..+..++.+ .. ++
T Consensus 32 ~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~~ 111 (463)
T PLN02949 32 RKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWIE 111 (463)
T ss_pred CCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccccc
Confidence 467999999999887 999999999999999999 77777754322221 122344421 11 11
Q ss_pred c--chh---H----------HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhh-hHHHh-------
Q 004092 203 T--GRE---K----------ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLAT-RARNY------- 259 (774)
Q Consensus 203 ~--~~~---l----------~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~-~~~k~------- 259 (774)
. +.. + ...+... ++.|++.+.... ....++ + ..++|+++.+|...... .+.+.
T Consensus 112 ~~~~~~~t~~~~~~~~~~l~~~~~~~~-~p~v~vDt~~~~-~~~pl~-~-~~~~~v~~yvH~p~~~~dm~~~v~~~~~~~ 187 (463)
T PLN02949 112 EETYPRFTMIGQSLGSVYLAWEALCKF-TPLYFFDTSGYA-FTYPLA-R-LFGCKVVCYTHYPTISSDMISRVRDRSSMY 187 (463)
T ss_pred cccCCceehHHHHHHHHHHHHHHHHhc-CCCEEEeCCCcc-cHHHHH-H-hcCCcEEEEEeCCcchHHHHHHHhhccccc
Confidence 0 000 0 0011113 445677665421 112222 1 33689999999632110 01110
Q ss_pred ------hh--------hhhhHHHH-HHHHHHHhccEEEccCCcchh-hcccC-CCCCEEEeCCCCCCcccccccCchhhH
Q 004092 260 ------AS--------SGQLELLN-DWKKVFNRATVVVFPDYVLPM-MYSAF-DAGNYYVIPGSPAKAWEADTNMDLYND 322 (774)
Q Consensus 260 ------~~--------~~~~~li~-~~~~~~~~a~~vv~ps~~~~~-i~~~v-~~~ki~vIpg~gvd~~~~~~~~~~~k~ 322 (774)
.. ......+. .+......++.++..+..... +.... ...++.+++ +|+|...+...+.
T Consensus 188 ~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvy-p~vd~~~~~~~~~---- 262 (463)
T PLN02949 188 NNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVY-PPCDTSGLQALPL---- 262 (463)
T ss_pred CccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEc-CCCCHHHcccCCc----
Confidence 00 00001111 122223456666666555322 22211 224566666 3555422211111
Q ss_pred HHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCC--CCchHHHHHHHHH
Q 004092 323 TVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDS--TSNYSVVIEAIAH 399 (774)
Q Consensus 323 ~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~--~e~Y~~~L~~la~ 399 (774)
...+++.+++++| ++.++ ||++.+|+|+..+.++.++ ..++++|+|+| ++. .++|.+.++++++
T Consensus 263 ------~~~~~~~~il~vG-R~~~~---Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~~~eL~~la~ 329 (463)
T PLN02949 263 ------ERSEDPPYIISVA-QFRPE---KAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEERLQKLKDRAK 329 (463)
T ss_pred ------cccCCCCEEEEEE-eeecc---CCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHHHHHHHHHHH
Confidence 1123456899999 99998 9999999999988754321 11239999999 532 2456788999999
Q ss_pred HcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc-ccccc---CccEEEE
Q 004092 400 NLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDD---RVNGYLF 473 (774)
Q Consensus 400 ~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~-EiV~d---g~~G~Lv 473 (774)
++++++ +|.|+|++ +++.++|+.||++|+||..| +||++++||||||+|||+++.||.. |++.+ +.+|+++
T Consensus 330 ~l~L~~-~V~f~g~v~~~el~~ll~~a~~~v~~s~~E--~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~ 406 (463)
T PLN02949 330 ELGLDG-DVEFHKNVSYRDLVRLLGGAVAGLHSMIDE--HFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLA 406 (463)
T ss_pred HcCCCC-cEEEeCCCCHHHHHHHHHhCcEEEeCCccC--CCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccC
Confidence 999998 99999987 88999999999999999988 8999999999999999999999975 67754 6789988
Q ss_pred cCCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 004092 474 PKENIKALTHIILQVIT-NGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (774)
Q Consensus 474 ~~~d~e~La~aI~~Ll~-d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~~ 531 (774)
+ |+++++++|.++++ + ++.+++|+++|++.+++|+++++++++.+.++++++.
T Consensus 407 ~--~~~~la~ai~~ll~~~---~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 407 T--TVEEYADAILEVLRMR---ETERLEIAAAARKRANRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred C--CHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 5 89999999999998 4 5678899999999998899999999999999988653
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=1.9e-28 Score=276.69 Aligned_cols=343 Identities=12% Similarity=0.055 Sum_probs=228.2
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-hhhcCccEEEcccch--h--------------
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-WRNIGVPVAILQTGR--E-------------- 206 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~-~~~~gi~i~~l~~~~--~-------------- 206 (774)
.+|+.++... .+|.+..+..+++.|.++||+|+|++......... ....++.+..+.... .
T Consensus 3 ~~~~~~~~~~--~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (415)
T cd03816 3 RKRVCVLVLG--DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVL 80 (415)
T ss_pred ccEEEEEEec--ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHH
Confidence 3456555553 36667777899999999999999999865332222 345566666554432 0
Q ss_pred ------HHHHhhhcCccEEEEcCCchhH-H-HHHHHhCCCCCCCEEEEEcCchhh-hhHHHhhhhhhhHHHHHH-HHHHH
Q 004092 207 ------KASFVNWLNYDGILVNSLEAKV-V-ISNIMQEPFKSLPLVWTIHEGTLA-TRARNYASSGQLELLNDW-KKVFN 276 (774)
Q Consensus 207 ------l~~~i~~~~~DIIhvhs~~~~~-~-l~~Ll~~~~~~ipvI~tiHg~~l~-~~~~k~~~~~~~~li~~~-~~~~~ 276 (774)
+..+++..+||+||+|++.... . .+.++ .+..++|+|+++|+.... .............+.... +..++
T Consensus 81 ~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~-~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 159 (415)
T cd03816 81 WQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLY-CLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGR 159 (415)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHH-HHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhh
Confidence 0012344689999998755421 2 22332 234578999999974211 000000000011122222 23556
Q ss_pred hccEEEccCCcch--hhcccCCCCCEEEeCCCCCCcccccccCchh-hHHHHH-------------HhCC-CCCCEEEEE
Q 004092 277 RATVVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-NDTVRV-------------KMGF-KPDDLVIAI 339 (774)
Q Consensus 277 ~a~~vv~ps~~~~--~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~-k~~lR~-------------~lgl-~~~~~vIl~ 339 (774)
.++.++..+.... +...+++.+++.+||| +.+ ..+.+..... ....+. ..+. +++..++++
T Consensus 160 ~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~N-g~~-~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 237 (415)
T cd03816 160 LADYNLCVTKAMKEDLQQFNNWKIRATVLYD-RPP-EQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVS 237 (415)
T ss_pred cCCEeeecCHHHHHHHHhhhccCCCeeecCC-CCH-HHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEE
Confidence 6787777766632 2223466789999995 432 2232222211 111111 0122 234457777
Q ss_pred EecccccccccccHHHHHHHHHHchhh------cccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 340 VGTQFMYRGLWLEHALILRALLPLFSE------VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 340 vGsrl~~~KgiKg~~lLLeA~~~L~~~------~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
+| ++.+. ||++.+++|+..+.+. +|+ ++|+|+| |+.. +.++++++++++++ .+.+.|
T Consensus 238 ~g-rl~~~---K~~~~li~A~~~l~~~~~~~~~~~~-------i~l~ivG~G~~~----~~l~~~~~~~~l~~-~~~~~g 301 (415)
T cd03816 238 ST-SWTPD---EDFGILLDALVAYEKSAATGPKLPK-------LLCIITGKGPLK----EKYLERIKELKLKK-VTIRTP 301 (415)
T ss_pred ec-cccCC---CCHHHHHHHHHHHHHhhcccccCCC-------EEEEEEecCccH----HHHHHHHHHcCCCc-EEEEcC
Confidence 88 88888 9999999999998753 355 9999999 8865 78889999999987 555667
Q ss_pred Cc--ccHHHHHHHcCEEEEcCcc-CcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 413 AE--GDVDSVLNTADVVIYGSFL-EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 413 ~~--~dl~~~l~aaDI~V~PS~~-E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
++ +++..+|++||++|.|+.. +..|+|++++||||||+|||+|+.+|+.|+|.++.+|++++ |+++++++|..++
T Consensus 302 ~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d~~~la~~i~~ll 379 (415)
T cd03816 302 WLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--DSEELAEQLIDLL 379 (415)
T ss_pred cCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--CHHHHHHHHHHHH
Confidence 64 8999999999999975422 11279999999999999999999999999999999999994 8999999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHH
Q 004092 490 TNGKISPFARNIASIGRRSV 509 (774)
Q Consensus 490 ~d~~~~~~r~~m~~~ar~~a 509 (774)
+|.-.++.+++|+++|++.+
T Consensus 380 ~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 380 SNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred hcCCCHHHHHHHHHHHHHhh
Confidence 87000367789999999887
No 54
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=3.6e-28 Score=273.52 Aligned_cols=340 Identities=12% Similarity=0.085 Sum_probs=234.5
Q ss_pred CCCeEEEEecCCC--CChHHHHHHHHHHHHHHcC-CeEEEEEcCCCcc-----------------hh----hhh--h---
Q 004092 143 RKPQLALVFPDLL--IDPQQLQMVTIAIALREIG-YAIQVYSLEDGRA-----------------HE----VWR--N--- 193 (774)
Q Consensus 143 rk~rialV~~~L~--~GG~e~~v~~Lak~L~~~G-~eV~V~t~~~~~~-----------------~~----~~~--~--- 193 (774)
.++||+++..... .+|....+..++..|.++| |+|+|+++..... .+ .|. .
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 4689999999774 6899999999999999999 7999998854210 00 010 0
Q ss_pred ---cCccEEEc---------ccchhHHHHhhhcCccEEEEcCCchhHHH--HHHHhCCCCCCCEEEEEcCchhhhhHHHh
Q 004092 194 ---IGVPVAIL---------QTGREKASFVNWLNYDGILVNSLEAKVVI--SNIMQEPFKSLPLVWTIHEGTLATRARNY 259 (774)
Q Consensus 194 ---~gi~i~~l---------~~~~~l~~~i~~~~~DIIhvhs~~~~~~l--~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~ 259 (774)
..++.+.- .....+...++..+||+||++++...+.+ +..+..++ .++|.++|++...|. ..+
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~--~~vV~tyHT~y~~Y~-~~~ 159 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKF--RLVIGIVHTNYLEYV-KRE 159 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcC--CcEEEEECCChHHHH-HHh
Confidence 01111100 01233556677899999999999876554 33333322 448889997443321 111
Q ss_pred h----hhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCC--
Q 004092 260 A----SSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPD-- 333 (774)
Q Consensus 260 ~----~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~-- 333 (774)
. .......+..+... ..++.+..|+....... ....+.+ .|+|...|+ +..+. .++... .++
T Consensus 160 ~~g~~~~~l~~~~~~~~~r-~~~d~vi~pS~~~~~l~-----~~~i~~v-~GVd~~~f~---~~~~~-~~~~~~-~~~~~ 227 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVD-IYCHKVIRLSAATQDYP-----RSIICNV-HGVNPKFLE---IGKLK-LEQQKN-GEQAF 227 (462)
T ss_pred ccchHHHHHHHHHHHHHHH-HhcCEEEccCHHHHHHh-----hCEEecC-ceechhhcC---CCccc-HhhhcC-CCCCc
Confidence 1 11111112222211 12566777765332211 1233333 588874332 22111 222222 333
Q ss_pred CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 334 ~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
.+.++|+| |+.++ ||++.+|+|++.+.+..|+ ++|+|+| |+.. +.|++.++++++.. ++ |.|
T Consensus 228 ~~~~l~vG-RL~~e---K~~~~Li~a~~~l~~~~~~-------~~l~ivGdGp~~----~~L~~~a~~l~l~~-~v-f~G 290 (462)
T PLN02846 228 TKGAYYIG-KMVWS---KGYKELLKLLHKHQKELSG-------LEVDLYGSGEDS----DEVKAAAEKLELDV-RV-YPG 290 (462)
T ss_pred ceEEEEEe-cCccc---CCHHHHHHHHHHHHhhCCC-------eEEEEECCCccH----HHHHHHHHhcCCcE-EE-ECC
Confidence 34689999 99999 9999999999999887777 9999999 9887 78899999998875 44 888
Q ss_pred CcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcC
Q 004092 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNG 492 (774)
Q Consensus 413 ~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~ 492 (774)
.. +..++|+.+|+||+||..| +||++++||||||+|||+++.++ .+++.++.+|++++ |.++++++|..++.+
T Consensus 291 ~~-~~~~~~~~~DvFv~pS~~E--t~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--~~~~~a~ai~~~l~~- 363 (462)
T PLN02846 291 RD-HADPLFHDYKVFLNPSTTD--VVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYD--DGKGFVRATLKALAE- 363 (462)
T ss_pred CC-CHHHHHHhCCEEEECCCcc--cchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecC--CHHHHHHHHHHHHcc-
Confidence 64 5568999999999999999 89999999999999999999998 59999999998884 899999999999987
Q ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004092 493 KISPFARNIASIGRRSVKNLMALETIEGYAMLLENV 528 (774)
Q Consensus 493 ~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~l 528 (774)
+. ..++..++ +.|+|+.+++++.++++--
T Consensus 364 --~~--~~~~~~a~---~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 364 --EP--APLTDAQR---HELSWEAATERFLRVADLD 392 (462)
T ss_pred --Cc--hhHHHHHH---HhCCHHHHHHHHHHHhccC
Confidence 43 22333222 5899999999999999754
No 55
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.96 E-value=1.5e-27 Score=269.52 Aligned_cols=346 Identities=16% Similarity=0.064 Sum_probs=234.7
Q ss_pred eEEEEecCCCCC-hHHHHHHHHHHHHHHc--CCeEEEEEcCCCcch-hhh----hh------cCccEEEcc-c-------
Q 004092 146 QLALVFPDLLID-PQQLQMVTIAIALREI--GYAIQVYSLEDGRAH-EVW----RN------IGVPVAILQ-T------- 203 (774)
Q Consensus 146 rialV~~~L~~G-G~e~~v~~Lak~L~~~--G~eV~V~t~~~~~~~-~~~----~~------~gi~i~~l~-~------- 203 (774)
.++|++|+++.| |+|+++...+.+|++. +++|+|+|....... ..+ +. -++++..+. .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 478999999998 9999999999999998 899999998764422 111 01 122211110 0
Q ss_pred -ch----------hHH---HHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhh-hhHHH----------
Q 004092 204 -GR----------EKA---SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA-TRARN---------- 258 (774)
Q Consensus 204 -~~----------~l~---~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~-~~~~k---------- 258 (774)
.. .+. ..+...+||+|+.++.....+....+ +.++|+|+.+|-.... ..+.+
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~---~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRL---LGGCPVGAYVHYPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHH---hcCCeEEEEecCCcchHHHHHHHhhccccccC
Confidence 00 010 11223479999988755422222211 2367999999942100 00100
Q ss_pred -----------hhhhhhhHHH-HHHHHHHHhccEEEccCCcchh-hcccC-CCCCEEEeCCCCCCcccccccCchhhHHH
Q 004092 259 -----------YASSGQLELL-NDWKKVFNRATVVVFPDYVLPM-MYSAF-DAGNYYVIPGSPAKAWEADTNMDLYNDTV 324 (774)
Q Consensus 259 -----------~~~~~~~~li-~~~~~~~~~a~~vv~ps~~~~~-i~~~v-~~~ki~vIpg~gvd~~~~~~~~~~~k~~l 324 (774)
........++ .........++.++.++..... +.... ...++.+|+ +|+|...+.....
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~-~gvd~~~~~~~~~------ 231 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVY-PPCDVEELLKLPL------ 231 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEc-CCCCHHHhccccc------
Confidence 0000001111 1334456678888777665322 22222 224778887 3677633221111
Q ss_pred HHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCC--CCchHHHHHHHHHHc
Q 004092 325 RVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDS--TSNYSVVIEAIAHNL 401 (774)
Q Consensus 325 R~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~--~e~Y~~~L~~la~~l 401 (774)
....+.++++++| ++.+. ||++.+++|++.+.+..|+ ....+++|+|+| |.. ..+|.+.|+++++++
T Consensus 232 ----~~~~~~~~il~vg-r~~~~---K~~~~li~A~~~l~~~~~~--~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l 301 (419)
T cd03806 232 ----DEKTRENQILSIA-QFRPE---KNHPLQLRAFAKLLKRLPE--EIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKEL 301 (419)
T ss_pred ----ccccCCcEEEEEE-eecCC---CCHHHHHHHHHHHHHhCcc--cccCceEEEEEcCCCCcccHHHHHHHHHHHHHh
Confidence 1234557999999 99998 9999999999999877653 012249999999 532 235778899999999
Q ss_pred CCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc-ccccc---cCccEEEEcC
Q 004092 402 HYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI-RKYVD---DRVNGYLFPK 475 (774)
Q Consensus 402 gL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi-~EiV~---dg~~G~Lv~~ 475 (774)
++.+ +|+|+|.+ +++..+|+.||++|+||..| +||++++||||||+|||+++.+|. .+++. ++.+|++++
T Consensus 302 ~l~~-~V~f~g~v~~~~l~~~l~~adv~v~~s~~E--~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~- 377 (419)
T cd03806 302 GLED-KVEFVVNAPFEELLEELSTASIGLHTMWNE--HFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS- 377 (419)
T ss_pred CCCC-eEEEecCCCHHHHHHHHHhCeEEEECCccC--CcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC-
Confidence 9998 99999975 89999999999999999998 899999999999999999999875 47777 889999975
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHhcCHHHHHH
Q 004092 476 ENIKALTHIILQVITNGKISPFAR-NIASIGRRSVKNLMALETIE 519 (774)
Q Consensus 476 ~d~e~La~aI~~Ll~d~~~~~~r~-~m~~~ar~~ak~fs~~~~a~ 519 (774)
|++++|++|.+++++ ++... .++++++..+++|+++.+.+
T Consensus 378 -d~~~la~ai~~ll~~---~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 378 -TAEEYAEAIEKILSL---SEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred -CHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 999999999999997 65544 56555555558899988653
No 56
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.96 E-value=1.4e-27 Score=274.32 Aligned_cols=277 Identities=15% Similarity=0.138 Sum_probs=204.0
Q ss_pred hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc-hh
Q 004092 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-PM 290 (774)
Q Consensus 212 ~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~-~~ 290 (774)
...++|++|++.+... ..+ ++ .....+|++.++|+............................++.++.++... ..
T Consensus 208 ~~~~~di~i~dr~~~~-~~~-~~-~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~~ 284 (500)
T TIGR02918 208 NLTKKDIIILDRSTGI-GQA-VL-ENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQI 284 (500)
T ss_pred hCCCCCEEEEcCCccc-chH-HH-hcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHHH
Confidence 3458999999887652 222 22 23557899999997332211000000000111111111233456666665431 11
Q ss_pred hcc-----cCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchh
Q 004092 291 MYS-----AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (774)
Q Consensus 291 i~~-----~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~ 365 (774)
+.. .....++.+||+ |++...+. +. ...+...|+++| |+.+. ||++.+++|+..+.+
T Consensus 285 l~~~~~~~~~~~~ki~viP~-g~~~~~~~---~~----------~~r~~~~il~vG-rl~~~---Kg~~~li~A~~~l~~ 346 (500)
T TIGR02918 285 LKNQFKKYYNIEPRIYTIPV-GSLDELQY---PE----------QERKPFSIITAS-RLAKE---KHIDWLVKAVVKAKK 346 (500)
T ss_pred HHHHhhhhcCCCCcEEEEcC-CCcccccC---cc----------cccCCeEEEEEe-ccccc---cCHHHHHHHHHHHHh
Confidence 111 122467899994 44321111 10 122346899999 88998 999999999999999
Q ss_pred hcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHH
Q 004092 366 EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (774)
Q Consensus 366 ~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llE 444 (774)
+.|+ ++|+|+| |+.. +.++++++++++.+ +|.|+|.. ++.++|+.||++|+||..| |||++++|
T Consensus 347 ~~p~-------~~l~i~G~G~~~----~~l~~~i~~~~l~~-~V~f~G~~-~~~~~~~~adv~v~pS~~E--gfgl~~lE 411 (500)
T TIGR02918 347 SVPE-------LTFDIYGEGGEK----QKLQKIINENQAQD-YIHLKGHR-NLSEVYKDYELYLSASTSE--GFGLTLME 411 (500)
T ss_pred hCCC-------eEEEEEECchhH----HHHHHHHHHcCCCC-eEEEcCCC-CHHHHHHhCCEEEEcCccc--cccHHHHH
Confidence 8988 9999999 8765 77889999999988 99999976 8999999999999999998 89999999
Q ss_pred HHHcCCCEEEcCCc-ccccccccCccEEEEcCC----C----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHH
Q 004092 445 ALCFRKPIIAPDLS-NIRKYVDDRVNGYLFPKE----N----IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL 515 (774)
Q Consensus 445 AMA~G~PVIatd~g-gi~EiV~dg~~G~Lv~~~----d----~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~ 515 (774)
|||||+|||+++++ |.+|+|.+|.+|++++++ | +++||++|.+++ + ++.+++|+++|++.+++|+++
T Consensus 412 Ama~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~---~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 412 AVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-N---SNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999986 899999999999999843 3 889999999999 5 567889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004092 516 ETIEGYAMLLENV 528 (774)
Q Consensus 516 ~~a~~y~~L~e~l 528 (774)
.++++|.++++++
T Consensus 488 ~v~~~w~~ll~~~ 500 (500)
T TIGR02918 488 NIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999763
No 57
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.95 E-value=2.7e-27 Score=247.70 Aligned_cols=346 Identities=15% Similarity=0.152 Sum_probs=244.7
Q ss_pred eEEEEecCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-hhhcCccEEEcccc---------------hhH
Q 004092 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-WRNIGVPVAILQTG---------------REK 207 (774)
Q Consensus 146 rialV~~~L--~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~-~~~~gi~i~~l~~~---------------~~l 207 (774)
++++|.+.+ ..||.|.++..|++.|.+.||.|.+++...++..-. ....+..++.++.. ..+
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pll 81 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLL 81 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCccc
Confidence 567777766 579999999999999999999999999876553211 11222334433321 112
Q ss_pred HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc
Q 004092 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (774)
Q Consensus 208 ~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~ 287 (774)
...+...+..+||-|++.+......++-.+..|.++|+|-|. ++. ...........++...-....+..-+...++.
T Consensus 82 r~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHS--lfG-fad~~si~~n~ll~~sL~~id~~IcVshtske 158 (426)
T KOG1111|consen 82 RPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHS--LFG-FADIGSILTNKLLPLSLANIDRIICVSHTSKE 158 (426)
T ss_pred chhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccc--ccc-ccchhhhhhcceeeeeecCCCcEEEEeecCCC
Confidence 233445689999999887743444455445678999999994 221 11111111111111111111111122223333
Q ss_pred chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCC-EEEEEEecccccccccccHHHHHHHHHHchhh
Q 004092 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDD-LVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (774)
Q Consensus 288 ~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~-~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~ 366 (774)
-.+....++..++.+||| .++...|.+.+.. .+..+ ..+..++ |+.++ ||.++++++++++.++
T Consensus 159 ntvlr~~L~p~kvsvIPn-Av~~~~f~P~~~~----------~~S~~i~~ivv~s-RLvyr---KGiDll~~iIp~vc~~ 223 (426)
T KOG1111|consen 159 NTVLRGALAPAKVSVIPN-AVVTHTFTPDAAD----------KPSADIITIVVAS-RLVYR---KGIDLLLEIIPSVCDK 223 (426)
T ss_pred ceEEEeccCHhHeeeccc-eeeccccccCccc----------cCCCCeeEEEEEe-eeeec---cchHHHHHHHHHHHhc
Confidence 556677788899999995 6666444442221 23344 4555555 99999 9999999999999999
Q ss_pred cccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHH
Q 004092 367 VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (774)
Q Consensus 367 ~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~ll 443 (774)
+|+ ++++|+| ||.+ ..+++..+++.+++ +|.++|.+ +++.++|..-|||+.||..| .|+++++
T Consensus 224 ~p~-------vrfii~GDGPk~----i~lee~lEk~~l~~-rV~~lG~v~h~~Vr~vl~~G~IFlntSlTE--afc~~iv 289 (426)
T KOG1111|consen 224 HPE-------VRFIIIGDGPKR----IDLEEMLEKLFLQD-RVVMLGTVPHDRVRDVLVRGDIFLNTSLTE--AFCMVIV 289 (426)
T ss_pred CCC-------eeEEEecCCccc----chHHHHHHHhhccC-ceEEecccchHHHHHHHhcCcEEeccHHHH--HHHHHHH
Confidence 999 9999999 9998 66778888899999 99999977 89999999999999999999 7999999
Q ss_pred HHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 004092 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (774)
Q Consensus 444 EAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~ 522 (774)
|||+||+|||+|.+||++|++.++ -.+....+++++++++.+.+.. .+. .-....+.. +.|+|+.+++.-+
T Consensus 290 EAaScGL~VVsTrVGGIpeVLP~d--~i~~~~~~~~dl~~~v~~ai~~-----~~~-~p~~~h~~v~~~y~w~dVa~rTe 361 (426)
T KOG1111|consen 290 EAASCGLPVVSTRVGGIPEVLPED--MITLGEPGPDDLVGAVEKAITK-----LRT-LPLEFHDRVKKMYSWKDVAERTE 361 (426)
T ss_pred HHHhCCCEEEEeecCCccccCCcc--ceeccCCChHHHHHHHHHHHHH-----hcc-CchhHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999999875 2234445789999999988875 111 123334555 4599999999999
Q ss_pred HHHHHHhcC
Q 004092 523 MLLENVLKL 531 (774)
Q Consensus 523 ~L~e~ll~~ 531 (774)
++|.++.+.
T Consensus 362 kvy~r~~~t 370 (426)
T KOG1111|consen 362 KVYDRAATT 370 (426)
T ss_pred HHHHHHhhc
Confidence 999998664
No 58
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.95 E-value=2.6e-26 Score=257.44 Aligned_cols=331 Identities=14% Similarity=0.139 Sum_probs=221.9
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc--h--hhhhhcCccEEEcc-----------------------------
Q 004092 156 IDPQQLQMVTIAIALREIGYAIQVYSLEDGRA--H--EVWRNIGVPVAILQ----------------------------- 202 (774)
Q Consensus 156 ~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~--~--~~~~~~gi~i~~l~----------------------------- 202 (774)
.+|....+.++++.|.+. |+|++++..+.+. . .......-.+..++
T Consensus 13 ~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 91 (397)
T TIGR03087 13 NKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTGEPLSLPYYRSRR 91 (397)
T ss_pred CCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCCCCCcchhhCCHH
Confidence 467799999999999775 9999999875321 1 11111111111100
Q ss_pred cchhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchh-hh-hHH-------Hhhhhh-hhHHHHHHH
Q 004092 203 TGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL-AT-RAR-------NYASSG-QLELLNDWK 272 (774)
Q Consensus 203 ~~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l-~~-~~~-------k~~~~~-~~~li~~~~ 272 (774)
....+...++..++|+||+++......+ .....++|+|++.|+-.. .+ ... +..... ...+....+
T Consensus 92 ~~~~l~~~~~~~~~D~v~~~~~~~~~~~----~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 167 (397)
T TIGR03087 92 LARWVNALLAAEPVDAIVVFSSAMAQYV----TPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYER 167 (397)
T ss_pred HHHHHHHHHhhCCCCEEEEeccccceec----cccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 0112233455589999999986542121 112356899999996211 11 000 000000 011112233
Q ss_pred HHHHhccEEEccCCcchhhc---ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccc
Q 004092 273 KVFNRATVVVFPDYVLPMMY---SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (774)
Q Consensus 273 ~~~~~a~~vv~ps~~~~~i~---~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~Kg 349 (774)
..+..++.+++.+....... ......++.+|| +|+|...+...... ...+.++.++++++| ++.+.
T Consensus 168 ~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vip-ngvd~~~f~~~~~~-------~~~~~~~~~~ilf~G-~l~~~-- 236 (397)
T TIGR03087 168 AIAARFDAATFVSRAEAELFRRLAPEAAGRITAFP-NGVDADFFSPDRDY-------PNPYPPGKRVLVFTG-AMDYW-- 236 (397)
T ss_pred HHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEee-cccchhhcCCCccc-------cCCCCCCCcEEEEEE-ecCCc--
Confidence 46677887777766532221 223456888998 58887443322111 012234557899999 88887
Q ss_pred cccHHHHH----HHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHc
Q 004092 350 WLEHALIL----RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTA 424 (774)
Q Consensus 350 iKg~~lLL----eA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aa 424 (774)
||++.++ +++..+.++.|+ ++|+|+| |+. ..+ ++++..+ +|.|+|+++++..+|+.|
T Consensus 237 -k~~~~l~~~~~~~~~~l~~~~p~-------~~l~ivG~g~~-----~~~----~~l~~~~-~V~~~G~v~~~~~~~~~a 298 (397)
T TIGR03087 237 -PNIDAVVWFAERVFPAVRARRPA-------AEFYIVGAKPS-----PAV----RALAALP-GVTVTGSVADVRPYLAHA 298 (397)
T ss_pred -cCHHHHHHHHHHHHHHHHHHCCC-------cEEEEECCCCh-----HHH----HHhccCC-CeEEeeecCCHHHHHHhC
Confidence 7777766 556667777787 9999999 764 223 3334455 799999999999999999
Q ss_pred CEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 004092 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (774)
Q Consensus 425 DI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ 504 (774)
|++|+||...+ |+|++++||||||+|||+|+.++. .+...+.+|++++ +|+++++++|.++++| ++.+++|+++
T Consensus 299 dv~v~Ps~~~e-G~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~-~~~~~la~ai~~ll~~---~~~~~~~~~~ 372 (397)
T TIGR03087 299 AVAVAPLRIAR-GIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVA-ADPADFAAAILALLAN---PAEREELGQA 372 (397)
T ss_pred CEEEecccccC-CcccHHHHHHHcCCCEEecCcccc-cccccCCcceEeC-CCHHHHHHHHHHHHcC---HHHHHHHHHH
Confidence 99999997533 899999999999999999997532 2333445699987 8999999999999999 9999999999
Q ss_pred HHHHH-HhcCHHHHHHHHHHHHH
Q 004092 505 GRRSV-KNLMALETIEGYAMLLE 526 (774)
Q Consensus 505 ar~~a-k~fs~~~~a~~y~~L~e 526 (774)
|++.+ ++|+|+.+++++.++|+
T Consensus 373 ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 373 ARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999 67999999999999875
No 59
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.95 E-value=7.7e-26 Score=254.75 Aligned_cols=338 Identities=15% Similarity=0.086 Sum_probs=236.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhc---CccEEEcc---------------------
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI---GVPVAILQ--------------------- 202 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~---gi~i~~l~--------------------- 202 (774)
+++++..+-.+-.|..+.+-.+.|.+.+.+|.|+...-++........ ++.+....
T Consensus 2 ~~l~t~~~p~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 2 LILLTNTFPGAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEEEecCCCCCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 566677777777888999999999999999999876543322111110 11111111
Q ss_pred --------cch----hH----HHH-------------h----hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcC
Q 004092 203 --------TGR----EK----ASF-------------V----NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (774)
Q Consensus 203 --------~~~----~l----~~~-------------i----~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg 249 (774)
... .. ... + ...++|++|.+..........++.++....++|.+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg 161 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHG 161 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchHHHHHHHHHHhcCCceEEEEecc
Confidence 000 00 000 0 12456777776655533333444443333459999998
Q ss_pred chhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch-hhcc--cCCCCCEEEeCCCCCCcccccccCchhhHHHHH
Q 004092 250 GTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP-MMYS--AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (774)
Q Consensus 250 ~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~-~i~~--~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~ 326 (774)
..+... ... .......+..+..++.+++.+.... .+.. ....+++.+++ +|++...+.. .
T Consensus 162 ~d~~~~--~~~----~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~-~gv~~~~~~~--~-------- 224 (407)
T cd04946 162 YDLYED--RYP----SGYIPLRRYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSY-LGVSDPGIIS--K-------- 224 (407)
T ss_pred chhhhh--hcc----ccchHHHHHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEE-CCcccccccC--C--------
Confidence 554311 110 0111122234566777766655522 2222 23346778887 4666532211 1
Q ss_pred HhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCC
Q 004092 327 KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPL 405 (774)
Q Consensus 327 ~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~ 405 (774)
...++.+.++++| ++.+. ||++.+++|+..+.+.+|+ .+++++++| |+.. +.+++++++++..+
T Consensus 225 --~~~~~~~~il~~G-rl~~~---Kg~~~li~a~~~l~~~~p~-----~~l~~~iiG~g~~~----~~l~~~~~~~~~~~ 289 (407)
T cd04946 225 --PSKDDTLRIVSCS-YLVPV---KRVDLIIKALAALAKARPS-----IKIKWTHIGGGPLE----DTLKELAESKPENI 289 (407)
T ss_pred --CCCCCCEEEEEee-ccccc---cCHHHHHHHHHHHHHhCCC-----ceEEEEEEeCchHH----HHHHHHHHhcCCCc
Confidence 1234567899999 88888 9999999999999988764 227788899 7665 67888888777777
Q ss_pred ccEEEccCc--ccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcC-CCHHH
Q 004092 406 GVVKHMAAE--GDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK-ENIKA 480 (774)
Q Consensus 406 ~~V~flG~~--~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~-~d~e~ 480 (774)
+|.|+|++ +++..+|+. +|++++||..| |+|++++||||||+|||+|++||++|++.++.+|+++++ +|+++
T Consensus 290 -~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~E--g~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~ 366 (407)
T cd04946 290 -SVNFTGELSNSEVYKLYKENPVDVFVNLSESE--GLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPTPNE 366 (407)
T ss_pred -eEEEecCCChHHHHHHHhhcCCCEEEeCCccc--cccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHH
Confidence 89999988 578899976 78999999998 899999999999999999999999999999999999987 48999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 004092 481 LTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (774)
Q Consensus 481 La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~ 522 (774)
++++|.++++| ++.+++|+++|++.+ ++|+++.+.+.|.
T Consensus 367 la~~I~~ll~~---~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 367 LVSSLSKFIDN---EEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHhC---HHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99999999999 999999999999999 6799999988775
No 60
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.94 E-value=7.1e-25 Score=249.92 Aligned_cols=277 Identities=11% Similarity=0.103 Sum_probs=199.0
Q ss_pred hhHHHHhhhcCccEEEEcCCchhHHH--HHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhH----HHHHHHHHHHhc
Q 004092 205 REKASFVNWLNYDGILVNSLEAKVVI--SNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLE----LLNDWKKVFNRA 278 (774)
Q Consensus 205 ~~l~~~i~~~~~DIIhvhs~~~~~~l--~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~----li~~~~~~~~~a 278 (774)
..+...+...+|||||+++|...+.. +..++.++ + |+|.++|++...| +..+....... .+..+-..+. +
T Consensus 424 gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl-~-PVVasyHTny~eY-l~~y~~g~L~~~llk~l~~~v~r~h-c 499 (794)
T PLN02501 424 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF-N-HVVGVVHTNYLEY-IKREKNGALQAFFVKHINNWVTRAY-C 499 (794)
T ss_pred HHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc-C-CeEEEEeCCcHHH-HhHhcchhHHHHHHHHHHHHHHHhh-C
Confidence 34566778899999999999875555 33444433 4 8999999744332 11111111111 2222222111 6
Q ss_pred cEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHH
Q 004092 279 TVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILR 358 (774)
Q Consensus 279 ~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLe 358 (774)
+.+..|+...... ....+..+ .|||...|. +..+...+.+++.......++++| |+.+. ||++.||+
T Consensus 500 D~VIaPS~atq~L----~~~vI~nV--nGVDte~F~---P~~r~~~~r~lgi~~~~kgiLfVG-RLa~E---KGld~LLe 566 (794)
T PLN02501 500 HKVLRLSAATQDL----PKSVICNV--HGVNPKFLK---IGEKVAEERELGQQAFSKGAYFLG-KMVWA---KGYRELID 566 (794)
T ss_pred CEEEcCCHHHHHh----cccceeec--ccccccccC---CcchhHHHHhcCCccccCceEEEE-ccccc---CCHHHHHH
Confidence 7777776443321 22222222 388884333 322222335667665455689999 99999 99999999
Q ss_pred HHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCC
Q 004092 359 ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQT 437 (774)
Q Consensus 359 A~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qG 437 (774)
|++.+.++.|+ ++|+|+| |+.. +.+++++.++++ .|.|+|..+++..+|+.+|+||+||..| |
T Consensus 567 Ala~L~~~~pn-------vrLvIVGDGP~r----eeLe~la~eLgL---~V~FLG~~dd~~~lyasaDVFVlPS~sE--g 630 (794)
T PLN02501 567 LLAKHKNELDG-------FNLDVFGNGEDA----HEVQRAAKRLDL---NLNFLKGRDHADDSLHGYKVFINPSISD--V 630 (794)
T ss_pred HHHHHHhhCCC-------eEEEEEcCCccH----HHHHHHHHHcCC---EEEecCCCCCHHHHHHhCCEEEECCCcc--c
Confidence 99999887777 9999999 9876 778899998776 4899999988999999999999999999 8
Q ss_pred ccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHH
Q 004092 438 FPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALET 517 (774)
Q Consensus 438 fp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~ 517 (774)
||++++||||||+|||+++.+|. +.+.++.+|+++ +|+++++++|.+++.+ +..+..+.. ...++|+.+
T Consensus 631 FGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll~--~D~EafAeAI~~LLsd---~~~rl~~~a-----~~~~SWeAa 699 (794)
T PLN02501 631 LCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLTY--KTSEDFVAKVKEALAN---EPQPLTPEQ-----RYNLSWEAA 699 (794)
T ss_pred chHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEec--CCHHHHHHHHHHHHhC---chhhhHHHH-----HhhCCHHHH
Confidence 99999999999999999999985 447777888765 6899999999999999 765433332 347999999
Q ss_pred HHHHHHHH
Q 004092 518 IEGYAMLL 525 (774)
Q Consensus 518 a~~y~~L~ 525 (774)
++++.+.-
T Consensus 700 adrLle~~ 707 (794)
T PLN02501 700 TQRFMEYS 707 (794)
T ss_pred HHHHHHhh
Confidence 99988754
No 61
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.94 E-value=1.6e-25 Score=247.81 Aligned_cols=271 Identities=16% Similarity=0.184 Sum_probs=201.1
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc-hhhc
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-PMMY 292 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~-~~i~ 292 (774)
.++|+|+++.+..... .+.. .....+.+.++|+.......... .................++.+++++... ..+.
T Consensus 98 ~~~diii~~~~~~~~~--~~~~-~~~~~~~i~~~h~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l~ 173 (372)
T cd04949 98 TKPDVFILDRPTLDGQ--ALLN-MKKAAKVVVVLHSNHVSDNNDPV-HSLINNFYEYVFENLDKVDGVIVATEQQKQDLQ 173 (372)
T ss_pred CCCCEEEECCccccch--hHHh-ccCCceEEEEEChHHhCCccccc-ccccchhhHHHHhChhhCCEEEEccHHHHHHHH
Confidence 6899999998876422 2222 23446788999963322110000 0000010111111234555666655442 2222
Q ss_pred ccCC-CCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCC
Q 004092 293 SAFD-AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (774)
Q Consensus 293 ~~v~-~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~ 371 (774)
..+. ..++.+||+ |++...+.... ....+...++++| ++.+. ||++.+++|+..+.+++|+
T Consensus 174 ~~~~~~~~v~~ip~-g~~~~~~~~~~-----------~~~~~~~~i~~vg-rl~~~---K~~~~li~a~~~l~~~~~~-- 235 (372)
T cd04949 174 KQFGNYNPIYTIPV-GSIDPLKLPAQ-----------FKQRKPHKIITVA-RLAPE---KQLDQLIKAFAKVVKQVPD-- 235 (372)
T ss_pred HHhCCCCceEEEcc-cccChhhcccc-----------hhhcCCCeEEEEE-ccCcc---cCHHHHHHHHHHHHHhCCC--
Confidence 2222 234888883 66652221110 0123456899999 88888 9999999999999998888
Q ss_pred CCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC
Q 004092 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK 450 (774)
Q Consensus 372 ~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~ 450 (774)
++|+|+| |+.. ..++..++++++.+ +|.+.|+.+++..+|+.||++|+||..| |||++++|||+||+
T Consensus 236 -----~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~S~~E--g~~~~~lEAma~G~ 303 (372)
T cd04949 236 -----ATLDIYGYGDEE----EKLKELIEELGLED-YVFLKGYTRDLDEVYQKAQLSLLTSQSE--GFGLSLMEALSHGL 303 (372)
T ss_pred -----cEEEEEEeCchH----HHHHHHHHHcCCcc-eEEEcCCCCCHHHHHhhhhEEEeccccc--ccChHHHHHHhCCC
Confidence 9999999 7765 56778888899998 9999999899999999999999999988 89999999999999
Q ss_pred CEEEcCCc-ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004092 451 PIIAPDLS-NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGY 521 (774)
Q Consensus 451 PVIatd~g-gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y 521 (774)
|||+++.+ |..+++.++.+|++++++|+++++++|..++++ ++.+++|++++++.+++|++++++++|
T Consensus 304 PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 304 PVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLND---PKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred CEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 99999987 889999999999999999999999999999999 999999999999999999999998865
No 62
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.94 E-value=5e-25 Score=242.12 Aligned_cols=318 Identities=14% Similarity=0.113 Sum_probs=205.8
Q ss_pred eEEEEecCCC-CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEE--------------EcccchhHHHH
Q 004092 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVA--------------ILQTGREKASF 210 (774)
Q Consensus 146 rialV~~~L~-~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~--------------~l~~~~~l~~~ 210 (774)
||+++++.+. .||+|+++.++++.|.+. ++..+...............+... ...........
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYRKYLPLMPLAIEQ 78 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhhcCCceeechhhhchhhHhhHhhhCchhhHHHHh
Confidence 5788888776 799999999999998753 222222222111111110000000 00111112223
Q ss_pred hhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchh-hhhH-HHhhh----------hhhhHHHH-HHHHHHHh
Q 004092 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL-ATRA-RNYAS----------SGQLELLN-DWKKVFNR 277 (774)
Q Consensus 211 i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l-~~~~-~k~~~----------~~~~~li~-~~~~~~~~ 277 (774)
++..+||+|++++.... .. +. ...++|.++++|.... .+.. ..+.. ......+. .....+..
T Consensus 79 ~~~~~~D~v~~~~~~~~--~~-~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (351)
T cd03804 79 FDLSGYDLVISSSHAVA--KG-VI--TRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAAR 153 (351)
T ss_pred ccccCCCEEEEcCcHHh--cc-cc--CCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHhcC
Confidence 44578999998775431 11 11 2456899999996210 0000 00000 00011111 12234567
Q ss_pred ccEEEccCCcchhh-cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHH
Q 004092 278 ATVVVFPDYVLPMM-YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALI 356 (774)
Q Consensus 278 a~~vv~ps~~~~~i-~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lL 356 (774)
++.+++.+...... ..... .+..+|+ +|+|...+... +..+..++++| ++.+. ||++.+
T Consensus 154 ~d~ii~~S~~~~~~~~~~~~-~~~~vi~-~~~d~~~~~~~--------------~~~~~~il~~G-~~~~~---K~~~~l 213 (351)
T cd03804 154 VDYFIANSRFVARRIKKYYG-RDATVIY-PPVDTDRFTPA--------------EEKEDYYLSVG-RLVPY---KRIDLA 213 (351)
T ss_pred CCEEEECCHHHHHHHHHHhC-CCcEEEC-CCCCHhhcCcC--------------CCCCCEEEEEE-cCccc---cChHHH
Confidence 77777776653222 22222 3456777 36776322211 12344788999 88888 999999
Q ss_pred HHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCcc
Q 004092 357 LRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL 433 (774)
Q Consensus 357 LeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~ 433 (774)
++|++.+. ++|+|+| |+.. +.+++ +..+ +|.|+|++ +++.++|++||++|+||.
T Consensus 214 i~a~~~~~------------~~l~ivG~g~~~----~~l~~-----~~~~-~V~~~g~~~~~~~~~~~~~ad~~v~ps~- 270 (351)
T cd03804 214 IEAFNKLG------------KRLVVIGDGPEL----DRLRA-----KAGP-NVTFLGRVSDEELRDLYARARAFLFPAE- 270 (351)
T ss_pred HHHHHHCC------------CcEEEEECChhH----HHHHh-----hcCC-CEEEecCCCHHHHHHHHHhCCEEEECCc-
Confidence 99998763 5899999 7654 33433 4455 89999988 559999999999999999
Q ss_pred CcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcC
Q 004092 434 EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (774)
Q Consensus 434 E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs 513 (774)
| |||++++||||||+|||+++.++..|++.++.+|++++++|+++++++|..+++| ++ .+.+.+++.+++|+
T Consensus 271 e--~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~---~~---~~~~~~~~~~~~~~ 342 (351)
T cd03804 271 E--DFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKN---ED---FDPQAIRAHAERFS 342 (351)
T ss_pred C--CCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC---cc---cCHHHHHHHHHhcC
Confidence 7 8999999999999999999999999999999999999999999999999999999 74 23444555567799
Q ss_pred HHHHHHHH
Q 004092 514 ALETIEGY 521 (774)
Q Consensus 514 ~~~~a~~y 521 (774)
+++..+++
T Consensus 343 ~~~~~~~~ 350 (351)
T cd03804 343 ESRFREKI 350 (351)
T ss_pred HHHHHHHh
Confidence 98887754
No 63
>PLN02275 transferase, transferring glycosyl groups
Probab=99.93 E-value=6.7e-24 Score=236.13 Aligned_cols=302 Identities=13% Similarity=0.053 Sum_probs=198.9
Q ss_pred CCChHHHHHHHHHHHHHHcCC-eEEEEEcCCCc-chhhhhhcCccEEEcccchh-------------HHH----------
Q 004092 155 LIDPQQLQMVTIAIALREIGY-AIQVYSLEDGR-AHEVWRNIGVPVAILQTGRE-------------KAS---------- 209 (774)
Q Consensus 155 ~~GG~e~~v~~Lak~L~~~G~-eV~V~t~~~~~-~~~~~~~~gi~i~~l~~~~~-------------l~~---------- 209 (774)
.-.|.+..+..++..|.++|+ +|+|++..... ........+++++.++.... +..
T Consensus 13 ~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (371)
T PLN02275 13 GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLLW 92 (371)
T ss_pred cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888775 89999986533 22333444566666541100 111
Q ss_pred --HhhhcCccEEEEcCCchhH--HHHHHHhCCCCCCCEEEEEcCchhh-hhHHHhhhhhhhHHHH-HHHHHHHhccEEEc
Q 004092 210 --FVNWLNYDGILVNSLEAKV--VISNIMQEPFKSLPLVWTIHEGTLA-TRARNYASSGQLELLN-DWKKVFNRATVVVF 283 (774)
Q Consensus 210 --~i~~~~~DIIhvhs~~~~~--~l~~Ll~~~~~~ipvI~tiHg~~l~-~~~~k~~~~~~~~li~-~~~~~~~~a~~vv~ 283 (774)
..+..+||+||+|++.... ....++. +..++|+|+++|+.... .............+.. ..+..++.++.+++
T Consensus 93 ~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~ 171 (371)
T PLN02275 93 FLCVKIPRPDVFLVQNPPSVPTLAVVKLAC-WLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLC 171 (371)
T ss_pred HHHhhCCCCCEEEEeCCCCcHHHHHHHHHH-HHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEE
Confidence 1234799999998765421 2233333 24568999999974211 0000000011111222 23336677888888
Q ss_pred cCCcchhh-c--ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHH
Q 004092 284 PDYVLPMM-Y--SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRAL 360 (774)
Q Consensus 284 ps~~~~~i-~--~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~ 360 (774)
++...... . .+++ +.+|+| ++ ...+.+.... .... .++..+++++| ++.++ ||++.+++|+
T Consensus 172 ~S~~~~~~l~~~~g~~---i~vi~n-~~-~~~f~~~~~~------~~~~-~~~~~~i~~~g-rl~~~---k~~~~li~a~ 235 (371)
T PLN02275 172 VTKAMQHELDQNWGIR---ATVLYD-QP-PEFFRPASLE------IRLR-PNRPALVVSST-SWTPD---EDFGILLEAA 235 (371)
T ss_pred CCHHHHHHHHHhcCCC---eEEECC-CC-HHHcCcCCch------hccc-CCCcEEEEEeC-ceecc---CCHHHHHHHH
Confidence 77663221 1 1232 778885 32 2222221110 0111 23345677888 88888 9999999999
Q ss_pred HHchh-----------------hcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc-Cc--ccHHH
Q 004092 361 LPLFS-----------------EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDS 419 (774)
Q Consensus 361 ~~L~~-----------------~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG-~~--~dl~~ 419 (774)
..+.. ++|+ ++|+|+| |+.. +.+++.++++++++ |.|.+ ++ +++..
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~~~~~~-------i~l~ivG~G~~~----~~l~~~~~~~~l~~--v~~~~~~~~~~~~~~ 302 (371)
T PLN02275 236 VMYDRRVAARLNESDSASGKQSLYPR-------LLFIITGKGPQK----AMYEEKISRLNLRH--VAFRTMWLEAEDYPL 302 (371)
T ss_pred HHHHhhhhhccccccccccccccCCC-------eEEEEEeCCCCH----HHHHHHHHHcCCCc--eEEEcCCCCHHHHHH
Confidence 88742 2345 9999999 8876 78889999999987 67654 44 89999
Q ss_pred HHHHcCEEEEcC--ccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 420 VLNTADVVIYGS--FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 420 ~l~aaDI~V~PS--~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
+|++||++|+|+ ...+ |+|++++||||||+|||+++.||.+|+|.++.+|++++ |+++|+++|.+++
T Consensus 303 ~l~~aDv~v~~~~s~~~e-~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 303 LLGSADLGVSLHTSSSGL-DLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred HHHhCCEEEEeccccccc-cccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--CHHHHHHHHHHhC
Confidence 999999999864 2212 89999999999999999999999999999999999997 6999999998764
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=99.93 E-value=1.2e-23 Score=230.10 Aligned_cols=288 Identities=14% Similarity=0.119 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCC
Q 004092 162 QMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSL 241 (774)
Q Consensus 162 ~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~i 241 (774)
+-.-+.+.|...|++|+++....-. ...+.- ++...+.|+.... ...+-. .+..++
T Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~~ 70 (331)
T PHA01630 15 QKKLLEEHLKMLGHKVTVFEKPTLT---------------------KYQLPP-GYPIYIYYTIFNS-MLFWKG-IPHVGK 70 (331)
T ss_pred HHHHHHHHHHHhCCeeEEEeccchh---------------------hhhcCC-CCceeeehhhhhH-HHHHhh-ccccCC
Confidence 4445668899999999988643210 011111 3344444544332 222211 124578
Q ss_pred CEEEEEcCchhhhhHHHhhhhhhhHHHHHHHH-H-HHhccEEEccCCcchh--hcccCC-CCCEEEeCCCCCCccccccc
Q 004092 242 PLVWTIHEGTLATRARNYASSGQLELLNDWKK-V-FNRATVVVFPDYVLPM--MYSAFD-AGNYYVIPGSPAKAWEADTN 316 (774)
Q Consensus 242 pvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~-~-~~~a~~vv~ps~~~~~--i~~~v~-~~ki~vIpg~gvd~~~~~~~ 316 (774)
|+++++|+.. .+...+.. . ...++.+++++..... ...+++ .+++.+||+ |+|...+...
T Consensus 71 ~~v~e~~~~~--------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpN-GVd~~~f~~~ 135 (331)
T PHA01630 71 NIVFEVADTD--------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPH-NLNPRMFEYK 135 (331)
T ss_pred ceEEEEEeec--------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECC-CCCHHHcCCC
Confidence 9999999621 11111111 1 2456666666655322 122333 457899994 8887433221
Q ss_pred CchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHH
Q 004092 317 MDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIE 395 (774)
Q Consensus 317 ~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~ 395 (774)
.. -..+. +++++|+++.+. ||++.+++|++.+.++.++ ++++|+| ++.. ..+
T Consensus 136 ~~-----------~~~~~-~vl~~~g~~~~~---Kg~d~Li~A~~~l~~~~~~-------~~llivG~~~~~----~~l- 188 (331)
T PHA01630 136 PK-----------EKPHP-CVLAILPHSWDR---KGGDIVVKIFHELQNEGYD-------FYFLIKSSNMLD----PRL- 188 (331)
T ss_pred cc-----------ccCCC-EEEEEecccccc---CCHHHHHHHHHHHHhhCCC-------EEEEEEeCcccc----hhh-
Confidence 11 01234 444455488777 9999999999999987777 9999999 5433 111
Q ss_pred HHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcC
Q 004092 396 AIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK 475 (774)
Q Consensus 396 ~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~ 475 (774)
.++.. +......+++..+|+.||++|+||..| |||++++||||||+|||+|+.||++|++.++.||++++.
T Consensus 189 -----~~~~~--~~~~v~~~~l~~~y~~aDv~v~pS~~E--~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~ 259 (331)
T PHA01630 189 -----FGLNG--VKTPLPDDDIYSLFAGCDILFYPVRGG--AFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKS 259 (331)
T ss_pred -----ccccc--eeccCCHHHHHHHHHhCCEEEECCccc--cCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeee
Confidence 13332 222223489999999999999999998 899999999999999999999999999999988888753
Q ss_pred -------------------CCHHHHHHHHHHHHHcCCCc--HHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004092 476 -------------------ENIKALTHIILQVITNGKIS--PFAR-NIASIGRRSVKNLMALETIEGYAMLLEN 527 (774)
Q Consensus 476 -------------------~d~e~La~aI~~Ll~d~~~~--~~r~-~m~~~ar~~ak~fs~~~~a~~y~~L~e~ 527 (774)
.|.+++++++.+++.| + +..+ .++.+++..+++|+|++++++|.++|++
T Consensus 260 ~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~---~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 260 GRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALAN---WTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccccccccCCcccccccCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2778899999999987 5 4444 4555555666899999999999999975
No 65
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.93 E-value=6.2e-24 Score=234.58 Aligned_cols=322 Identities=13% Similarity=0.089 Sum_probs=219.6
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccch-------------------
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR------------------- 205 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~------------------- 205 (774)
+||+++.++ .||.+.++.++++.|.++||+|++++...+......+..++++..++...
T Consensus 2 ~~i~i~~~g--~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (357)
T PRK00726 2 KKILLAGGG--TGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKG 79 (357)
T ss_pred cEEEEEcCc--chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHH
Confidence 566666554 47999999999999999999999999865332223333466655554211
Q ss_pred --hHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEc
Q 004092 206 --EKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVF 283 (774)
Q Consensus 206 --~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ 283 (774)
.+.++++..+||+||+|+.... +...+.. +..++|+|++.|+.. .....++... .++.++.
T Consensus 80 ~~~~~~~ik~~~pDvv~~~~~~~~-~~~~~~~-~~~~~p~v~~~~~~~-~~~~~r~~~~--------------~~d~ii~ 142 (357)
T PRK00726 80 VLQARKILKRFKPDVVVGFGGYVS-GPGGLAA-RLLGIPLVIHEQNAV-PGLANKLLAR--------------FAKKVAT 142 (357)
T ss_pred HHHHHHHHHhcCCCEEEECCCcch-hHHHHHH-HHcCCCEEEEcCCCC-ccHHHHHHHH--------------HhchheE
Confidence 1233466679999999986552 4433333 356789998776411 1111222222 2222222
Q ss_pred cCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHH-HHHHH
Q 004092 284 PDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALIL-RALLP 362 (774)
Q Consensus 284 ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLL-eA~~~ 362 (774)
..... ... ....++.++++ |++...+.. . ..+++++++++.++++++|+. ... +++..++ +|+.+
T Consensus 143 ~~~~~--~~~-~~~~~i~vi~n-~v~~~~~~~---~---~~~~~~~~~~~~~~i~~~gg~-~~~---~~~~~~l~~a~~~ 208 (357)
T PRK00726 143 AFPGA--FPE-FFKPKAVVTGN-PVREEILAL---A---APPARLAGREGKPTLLVVGGS-QGA---RVLNEAVPEALAL 208 (357)
T ss_pred Cchhh--hhc-cCCCCEEEECC-CCChHhhcc---c---chhhhccCCCCCeEEEEECCc-HhH---HHHHHHHHHHHHH
Confidence 11111 111 45678999984 777632221 1 123356777777788888844 443 6654444 88888
Q ss_pred chhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHH
Q 004092 363 LFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEI 441 (774)
Q Consensus 363 L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~ 441 (774)
+.+. + ..++++| |+. +.+.+..+ +++ +|.+.|+++++.++|++||++|++| | +++
T Consensus 209 ~~~~-~--------~~~~~~G~g~~-----~~~~~~~~-~~~---~v~~~g~~~~~~~~~~~~d~~i~~~-----g-~~~ 264 (357)
T PRK00726 209 LPEA-L--------QVIHQTGKGDL-----EEVRAAYA-AGI---NAEVVPFIDDMAAAYAAADLVICRA-----G-AST 264 (357)
T ss_pred hhhC-c--------EEEEEcCCCcH-----HHHHHHhh-cCC---cEEEeehHhhHHHHHHhCCEEEECC-----C-HHH
Confidence 7643 2 4577888 653 34444444 555 3999999999999999999999865 2 689
Q ss_pred HHHHHHcCCCEEEcCCcc--------cccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 004092 442 LVKALCFRKPIIAPDLSN--------IRKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (774)
Q Consensus 442 llEAMA~G~PVIatd~gg--------i~EiV~dg~~G~Lv~~~d--~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~ 511 (774)
++|||+||+|||+++.++ ..+.+.+..+|++++++| +++|+++|.++++| ++.+++|++++++.+++
T Consensus 265 ~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~ 341 (357)
T PRK00726 265 VAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD---PERLEAMAEAARALGKP 341 (357)
T ss_pred HHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcCCc
Confidence 999999999999987643 235676777899999887 99999999999999 99999999999999999
Q ss_pred cCHHHHHHHHHHHHH
Q 004092 512 LMALETIEGYAMLLE 526 (774)
Q Consensus 512 fs~~~~a~~y~~L~e 526 (774)
+..+.+++.+.+++.
T Consensus 342 ~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 342 DAAERLADLIEELAR 356 (357)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999888764
No 66
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.92 E-value=5.8e-23 Score=225.52 Aligned_cols=313 Identities=14% Similarity=0.145 Sum_probs=214.4
Q ss_pred EecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc---------------------hhHH
Q 004092 150 VFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG---------------------REKA 208 (774)
Q Consensus 150 V~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~---------------------~~l~ 208 (774)
++.....||.++++..+++.|.++||+|++++...+.........++++..++.. ..+.
T Consensus 3 ~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (350)
T cd03785 3 LIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQAR 82 (350)
T ss_pred EEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHH
Confidence 3344456899999999999999999999999886543222222334555444321 1123
Q ss_pred HHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc
Q 004092 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (774)
Q Consensus 209 ~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~ 288 (774)
++++..+||+||+|+.... ....+.. +..++|++++.|+.. . . .. .+..+..++.+..++...
T Consensus 83 ~~i~~~~pDvI~~~~~~~~-~~~~~~a-~~~~~p~v~~~~~~~-~----~--------~~--~~~~~~~~~~vi~~s~~~ 145 (350)
T cd03785 83 KILKKFKPDVVVGFGGYVS-GPVGLAA-KLLGIPLVIHEQNAV-P----G--------LA--NRLLARFADRVALSFPET 145 (350)
T ss_pred HHHHhcCCCEEEECCCCcc-hHHHHHH-HHhCCCEEEEcCCCC-c----c--------HH--HHHHHHhhCEEEEcchhh
Confidence 4466689999999986552 3333332 355789887655311 0 0 00 111233455555553332
Q ss_pred hhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHH-HHHHHHHHchhhc
Q 004092 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHA-LILRALLPLFSEV 367 (774)
Q Consensus 289 ~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~-lLLeA~~~L~~~~ 367 (774)
... +...++.+|+ +|++...+. .. . .+++++++++.++++++|+.... |+.. .+++|+..+.+
T Consensus 146 ~~~---~~~~~~~~i~-n~v~~~~~~---~~--~-~~~~~~~~~~~~~i~~~~g~~~~----~~~~~~l~~a~~~l~~-- 209 (350)
T cd03785 146 AKY---FPKDKAVVTG-NPVREEILA---LD--R-ERARLGLRPGKPTLLVFGGSQGA----RAINEAVPEALAELLR-- 209 (350)
T ss_pred hhc---CCCCcEEEEC-CCCchHHhh---hh--h-hHHhcCCCCCCeEEEEECCcHhH----HHHHHHHHHHHHHhhc--
Confidence 211 4457888887 477753221 11 1 16678888888888888855544 5554 45688887763
Q ss_pred ccCCCCCCCeEE-EEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHH
Q 004092 368 SVENESNSPIKV-MILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKA 445 (774)
Q Consensus 368 p~~~~~~~~v~L-vIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEA 445 (774)
++ +++ +++| | .. +.+++.++++ .+ +|.+.|+++++.++|+.||++|.+| | +++++||
T Consensus 210 ~~-------~~~~~i~G~g-~~----~~l~~~~~~~--~~-~v~~~g~~~~~~~~l~~ad~~v~~s-----g-~~t~~Ea 268 (350)
T cd03785 210 KR-------LQVIHQTGKG-DL----EEVKKAYEEL--GV-NYEVFPFIDDMAAAYAAADLVISRA-----G-ASTVAEL 268 (350)
T ss_pred cC-------eEEEEEcCCc-cH----HHHHHHHhcc--CC-CeEEeehhhhHHHHHHhcCEEEECC-----C-HhHHHHH
Confidence 23 554 4566 5 22 5677777755 45 7999999999999999999999865 2 6899999
Q ss_pred HHcCCCEEEcCCcc--------cccccccCccEEEEcCC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHH
Q 004092 446 LCFRKPIIAPDLSN--------IRKYVDDRVNGYLFPKE--NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL 515 (774)
Q Consensus 446 MA~G~PVIatd~gg--------i~EiV~dg~~G~Lv~~~--d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~ 515 (774)
|++|+|||+++.++ ..+.+.++.+|++++++ |+++++++|..+++| ++.+++|+++++++++.+..+
T Consensus 269 m~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~ 345 (350)
T cd03785 269 AALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD---PERLKAMAEAARSLARPDAAE 345 (350)
T ss_pred HHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHH
Confidence 99999999987654 24566666789999987 899999999999999 999999999999988888887
Q ss_pred HHHH
Q 004092 516 ETIE 519 (774)
Q Consensus 516 ~~a~ 519 (774)
++++
T Consensus 346 ~i~~ 349 (350)
T cd03785 346 RIAD 349 (350)
T ss_pred HHHh
Confidence 7764
No 67
>PHA01633 putative glycosyl transferase group 1
Probab=99.91 E-value=1.8e-22 Score=219.39 Aligned_cols=303 Identities=12% Similarity=0.072 Sum_probs=196.1
Q ss_pred CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE--cCCchhHHH
Q 004092 153 DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV--NSLEAKVVI 230 (774)
Q Consensus 153 ~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv--hs~~~~~~l 230 (774)
.++.+....+..+++..|++.|.-|++++..- .++ .. . -=+|++ |-|....++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~----~~-~----------~~~~~~~~~~~~~~~~~ 61 (335)
T PHA01633 7 TMNYSSISNVSEDIAEVLRENGEIVTITKNPF----------YIP----KA-E----------KLIVFIPFHPPSLNPYL 61 (335)
T ss_pred EechhhhhhHHHHHHHHHHhCCcEEEEecCCc----------ccC----cc-c----------eEEEEeecCCcccchHH
Confidence 35567778889999999999998888876421 000 00 0 001111 112221122
Q ss_pred HHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCCc
Q 004092 231 SNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKA 310 (774)
Q Consensus 231 ~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~ 310 (774)
...- ....+.|++.|+|+........++..+.. .+++.++..... ....++... + +|++ |+|.
T Consensus 62 ~~~~-~~~~~~~~~tt~~g~~~~~~y~~~m~~~~-~vIavS~~t~~~------------L~~~G~~~~-i-~I~~-GVD~ 124 (335)
T PHA01633 62 YAYY-QFKGKKYFYTTCDGIPNIEIVNKYLLQDV-KFIPNSKFSAEN------------LQEVGLQVD-L-PVFH-GINF 124 (335)
T ss_pred hhhh-hhcCCCceEEeeCCcCchHHHHHHHhcCC-EEEeCCHHHHHH------------HHHhCCCCc-e-eeeC-CCCh
Confidence 2111 22335789999997442222222222211 112211111111 111223222 3 3553 7887
Q ss_pred ccccccCchhhHHHHHHhCCC-CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCc
Q 004092 311 WEADTNMDLYNDTVRVKMGFK-PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSN 389 (774)
Q Consensus 311 ~~~~~~~~~~k~~lR~~lgl~-~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~ 389 (774)
..+.+.. ......+++++.. ++.++++++| |+.++ ||++.+++|++.+.+++|+. ..+++++++|+.
T Consensus 125 ~~f~p~~-~~~~~~r~~~~~~~~~~~~i~~vG-Rl~~~---KG~~~LI~A~~~L~~~~p~~---~~~i~l~ivG~~---- 192 (335)
T PHA01633 125 KIVENAE-KLVPQLKQKLDKDFPDTIKFGIVS-GLTKR---KNMDLMLQVFNELNTKYPDI---AKKIHFFVISHK---- 192 (335)
T ss_pred hhcCccc-hhhHHHHHHhCcCCCCCeEEEEEe-CCccc---cCHHHHHHHHHHHHHhCCCc---cccEEEEEEcHH----
Confidence 4443221 1124566666654 4667899999 88888 99999999999998877640 112677777721
Q ss_pred hHHHHHHHHHHcCCCCccEEEcc---C--cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccccc
Q 004092 390 YSVVIEAIAHNLHYPLGVVKHMA---A--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYV 464 (774)
Q Consensus 390 Y~~~L~~la~~lgL~~~~V~flG---~--~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV 464 (774)
..+++++++ +|.|+| + .+++.++|++||++|+||..| |||++++||||||+|||+++.++++|++
T Consensus 193 -------~~~~l~l~~-~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~E--gfGlvlLEAMA~G~PVVas~~~~l~Ei~ 262 (335)
T PHA01633 193 -------QFTQLEVPA-NVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTE--GFGMPVLESMAMGTPVIHQLMPPLDEFT 262 (335)
T ss_pred -------HHHHcCCCC-cEEEEecCCCCCHHHHHHHHHhCCEEEECCccc--cCCHHHHHHHHcCCCEEEccCCCceeec
Confidence 134567887 899995 3 378999999999999999998 8999999999999999999999999875
Q ss_pred cc----------------C--ccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004092 465 DD----------------R--VNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAM 523 (774)
Q Consensus 465 ~d----------------g--~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~ 523 (774)
.+ + ..|++++..|+++++++|.+++.. .+ ...++.++++.+++|+|+++.++|.+
T Consensus 263 g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~---~~-~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 263 SWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFEL---QD-REERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred CCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhc---cC-hhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 42 2 247788889999999999999766 32 33347788899999999999998863
No 68
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.90 E-value=4.8e-22 Score=225.07 Aligned_cols=339 Identities=13% Similarity=0.117 Sum_probs=219.7
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEE-EcCCCcchhhhh---hcCccEEEccc--chhHHHHhhhcCccEEEEcCCchhHH
Q 004092 156 IDPQQLQMVTIAIALREIGYAIQVY-SLEDGRAHEVWR---NIGVPVAILQT--GREKASFVNWLNYDGILVNSLEAKVV 229 (774)
Q Consensus 156 ~GG~e~~v~~Lak~L~~~G~eV~V~-t~~~~~~~~~~~---~~gi~i~~l~~--~~~l~~~i~~~~~DIIhvhs~~~~~~ 229 (774)
..|-...+..|++.|.+.++++.|+ +........... ..++.+..++. ...+..+++..+||+||++.....+.
T Consensus 59 s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~~~~ 138 (425)
T PRK05749 59 SVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETELWPN 138 (425)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecchhHH
Confidence 4467889999999999988665442 222211111111 11333444443 34567778999999999885543222
Q ss_pred HHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchh--hcccCCCCCEEEeCCCC
Q 004092 230 ISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM--MYSAFDAGNYYVIPGSP 307 (774)
Q Consensus 230 l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~--i~~~v~~~ki~vIpg~g 307 (774)
+.... ...++|++.+-|..+.. ....+. .+-...+..+..++.+..++..... ...+++.+ +.+++|..
T Consensus 139 ~l~~~--~~~~ip~vl~~~~~~~~-s~~~~~-----~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~~ 209 (425)
T PRK05749 139 LIAEL--KRRGIPLVLANARLSER-SFKRYQ-----KFKRFYRLLFKNIDLVLAQSEEDAERFLALGAKNE-VTVTGNLK 209 (425)
T ss_pred HHHHH--HHCCCCEEEEeccCChh-hHHHHH-----HHHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCCC-cEeccccc
Confidence 22222 35678988765531111 111111 1112233455667777776665322 22344445 77887644
Q ss_pred CCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCC
Q 004092 308 AKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDS 386 (774)
Q Consensus 308 vd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~ 386 (774)
.|.... .........++++++ +++++++++| .. . |+.+.+++|+..+.+++|+ ++|+|+| |+.
T Consensus 210 ~d~~~~-~~~~~~~~~~r~~~~--~~~~vil~~~-~~--~---~~~~~ll~A~~~l~~~~~~-------~~liivG~g~~ 273 (425)
T PRK05749 210 FDIEVP-PELAARAATLRRQLA--PNRPVWIAAS-TH--E---GEEELVLDAHRALLKQFPN-------LLLILVPRHPE 273 (425)
T ss_pred ccCCCC-hhhHHHHHHHHHHhc--CCCcEEEEeC-CC--c---hHHHHHHHHHHHHHHhCCC-------cEEEEcCCChh
Confidence 443211 111112345677776 4555677666 42 3 7789999999999888888 9999999 775
Q ss_pred CCchHHHHHHHHHHcCCCC------------ccEEEccCcccHHHHHHHcCEEEE-cCccCcCCccHHHHHHHHcCCCEE
Q 004092 387 TSNYSVVIEAIAHNLHYPL------------GVVKHMAAEGDVDSVLNTADVVIY-GSFLEEQTFPEILVKALCFRKPII 453 (774)
Q Consensus 387 ~e~Y~~~L~~la~~lgL~~------------~~V~flG~~~dl~~~l~aaDI~V~-PS~~E~qGfp~~llEAMA~G~PVI 453 (774)
+ .+.+++.++++|+.. ..|.+.+...++..+|+.||++++ +|..| ++|.+++||||||+|||
T Consensus 274 r---~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e--~~g~~~lEAma~G~PVI 348 (425)
T PRK05749 274 R---FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVK--RGGHNPLEPAAFGVPVI 348 (425)
T ss_pred h---HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCC--CCCCCHHHHHHhCCCEE
Confidence 3 156888888888852 135555556799999999999655 67766 79999999999999999
Q ss_pred EcCC-cccccccccC-ccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 004092 454 APDL-SNIRKYVDDR-VNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (774)
Q Consensus 454 atd~-ggi~EiV~dg-~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll 529 (774)
+++. ++..+++++. .+|++++++|+++|+++|.++++| ++.+++|+++|++.+++. ....+++.+++.+.+
T Consensus 349 ~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~---~~~~~~m~~~a~~~~~~~--~~~~~~~~~~l~~~l 421 (425)
T PRK05749 349 SGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTD---PDARQAYGEAGVAFLKQN--QGALQRTLQLLEPYL 421 (425)
T ss_pred ECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHhc
Confidence 9765 5566655442 358888889999999999999999 999999999999999543 245566666665543
No 69
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.90 E-value=2.9e-22 Score=219.80 Aligned_cols=314 Identities=14% Similarity=0.162 Sum_probs=204.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc---------------------
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------------------- 204 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~--------------------- 204 (774)
+|.++.+.. ||.......+++.|.++||+|++++...+......+..++++..++..
T Consensus 2 ~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 79 (348)
T TIGR01133 2 KVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAV 79 (348)
T ss_pred eEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHH
Confidence 566665553 455557789999999999999999864432222223345655544321
Q ss_pred hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEcc
Q 004092 205 REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFP 284 (774)
Q Consensus 205 ~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~p 284 (774)
..+.++++..+||+||+|+.... ....++. +..++|+|++.|+. ..... .+..+..++.+...
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~-~~~~~~~-~~~~~p~v~~~~~~-~~~~~--------------~~~~~~~~d~ii~~ 142 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVS-GPAGLAA-KLLGIPLFHHEQNA-VPGLT--------------NKLLSRFAKKVLIS 142 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCccc-HHHHHHH-HHcCCCEEEECCCC-CccHH--------------HHHHHHHhCeeEEC
Confidence 12344566789999999986652 3333333 24567887544421 11001 11122344544443
Q ss_pred CCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHH-HHHHHHHHc
Q 004092 285 DYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHA-LILRALLPL 363 (774)
Q Consensus 285 s~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~-lLLeA~~~L 363 (774)
+...... + +..+|+ +|++...+... . .+..++++++.++++++|+... . |++. .+++|+..+
T Consensus 143 ~~~~~~~---~---~~~~i~-n~v~~~~~~~~--~----~~~~~~~~~~~~~i~~~gg~~~-~---~~~~~~l~~a~~~l 205 (348)
T TIGR01133 143 FPGAKDH---F---EAVLVG-NPVRQEIRSLP--V----PRERFGLREGKPTILVLGGSQG-A---KILNELVPKALAKL 205 (348)
T ss_pred chhHhhc---C---CceEEc-CCcCHHHhccc--c----hhhhcCCCCCCeEEEEECCchh-H---HHHHHHHHHHHHHH
Confidence 3221111 1 235666 47765222111 1 1335678888889999984433 4 7754 456888877
Q ss_pred hhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHH
Q 004092 364 FSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (774)
Q Consensus 364 ~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~ll 443 (774)
.+. + +++++++|... .+.+++.++++++.+ .|.|. .. ++.++|++||++|.+| | |++++
T Consensus 206 ~~~--~-------~~~~~~~g~~~---~~~l~~~~~~~~l~~-~v~~~-~~-~~~~~l~~ad~~v~~~-----g-~~~l~ 264 (348)
T TIGR01133 206 AEK--G-------IQIVHQTGKND---LEKVKNVYQELGIEA-IVTFI-DE-NMAAAYAAADLVISRA-----G-ASTVA 264 (348)
T ss_pred hhc--C-------cEEEEECCcch---HHHHHHHHhhCCceE-EecCc-cc-CHHHHHHhCCEEEECC-----C-hhHHH
Confidence 653 2 45544443221 166788888888866 56666 33 8999999999999864 3 78999
Q ss_pred HHHHcCCCEEEcCCcc-------cccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCH
Q 004092 444 KALCFRKPIIAPDLSN-------IRKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMA 514 (774)
Q Consensus 444 EAMA~G~PVIatd~gg-------i~EiV~dg~~G~Lv~~~d--~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~ 514 (774)
|||++|+|+|+++.++ ..+++.++.+|++++++| +++++++|.++++| ++.+++|+++++++++....
T Consensus 265 Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~ 341 (348)
T TIGR01133 265 ELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD---PANLEAMAEAARKLAKPDAA 341 (348)
T ss_pred HHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcCCccHH
Confidence 9999999999998764 235788888999998876 99999999999999 99999999999988877777
Q ss_pred HHHHH
Q 004092 515 LETIE 519 (774)
Q Consensus 515 ~~~a~ 519 (774)
+++++
T Consensus 342 ~~i~~ 346 (348)
T TIGR01133 342 KRIAE 346 (348)
T ss_pred HHHHh
Confidence 76654
No 70
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.89 E-value=1.7e-22 Score=199.13 Aligned_cols=167 Identities=20% Similarity=0.354 Sum_probs=150.4
Q ss_pred hHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhh-cccCCCCCCCeEEEEEe-CCCCCchHHHHHHHH
Q 004092 321 NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE-VSVENESNSPIKVMILS-GDSTSNYSVVIEAIA 398 (774)
Q Consensus 321 k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~-~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la 398 (774)
++..+.+.+.++++++|+++| ++.+. ||++.+++|+..+.++ .++ ++++|+| +... ..++..+
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g-~~~~~---K~~~~li~a~~~l~~~~~~~-------~~l~i~G~~~~~----~~~~~~~ 66 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIG-RLDPE---KGIDLLIEAFKKLKEKKNPN-------YKLVIVGDGEYK----KELKNLI 66 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEES-ESSGG---GTHHHHHHHHHHHHHHHHTT-------EEEEEESHCCHH----HHHHHHH
T ss_pred hHHHHHHcCCCCCCeEEEEEe-cCccc---cCHHHHHHHHHHHHhhcCCC-------eEEEEEcccccc----ccccccc
Confidence 466788889999999999999 88888 9999999999999875 677 9999999 6544 7788999
Q ss_pred HHcCCCCccEEEccCcc--cHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCC
Q 004092 399 HNLHYPLGVVKHMAAEG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKE 476 (774)
Q Consensus 399 ~~lgL~~~~V~flG~~~--dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~ 476 (774)
+.+++.+ +|.|+|... ++..+|+.||++|+||..| |+|.+++|||+||+|||+++.++..|++.++.+|+++++.
T Consensus 67 ~~~~~~~-~i~~~~~~~~~~l~~~~~~~di~v~~s~~e--~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~ 143 (172)
T PF00534_consen 67 EKLNLKE-NIIFLGYVPDDELDELYKSSDIFVSPSRNE--GFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPN 143 (172)
T ss_dssp HHTTCGT-TEEEEESHSHHHHHHHHHHTSEEEE-BSSB--SS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTT
T ss_pred ccccccc-cccccccccccccccccccceecccccccc--ccccccccccccccceeeccccCCceeeccccceEEeCCC
Confidence 9999988 999999885 9999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 004092 477 NIKALTHIILQVITNGKISPFARNIASIGRRS 508 (774)
Q Consensus 477 d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ 508 (774)
|+++++++|.+++++ ++.++.|+++++++
T Consensus 144 ~~~~l~~~i~~~l~~---~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 144 DIEELADAIEKLLND---PELRQKLGKNARER 172 (172)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---HHHHHHHHHHhcCC
Confidence 999999999999999 99999999999874
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.89 E-value=1.7e-22 Score=230.85 Aligned_cols=293 Identities=9% Similarity=0.025 Sum_probs=196.1
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhhhhHH---Hhhhhh--hhHH---HHHH-HHHHHhccE
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRAR---NYASSG--QLEL---LNDW-KKVFNRATV 280 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~~~~~---k~~~~~--~~~l---i~~~-~~~~~~a~~ 280 (774)
...|+|++|.+... .+..++.+...+.|+++++|.. ..+..+. ..+... .+.+ ...+ +.....++.
T Consensus 130 ~~~d~iwihDyhl~-llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~ 208 (460)
T cd03788 130 RPGDLVWVHDYHLL-LLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCCSR 208 (460)
T ss_pred CCCCEEEEeChhhh-HHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHHHH
Confidence 36799999999873 6666666656678999999951 1111000 000000 0000 0000 111111111
Q ss_pred EEccCCcc--hhhcccCCCCCEEEeCCCCCCcccccccCchh--hHHHHHHhCCCCCCEEEEEEecccccccccccHHHH
Q 004092 281 VVFPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY--NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALI 356 (774)
Q Consensus 281 vv~ps~~~--~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~--k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lL 356 (774)
+.-++... ...+.+ ...++.++| +|+|...+....... +...++..+..+++++|+++| |+.+. ||++.+
T Consensus 209 ~l~~~~~~~~~i~~~g-~~~~i~vip-~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vg-Rl~~~---Kgi~~l 282 (460)
T cd03788 209 LLGLEVTDDGGVEYGG-RRVRVGAFP-IGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVD-RLDYS---KGIPER 282 (460)
T ss_pred HcCCcccCCceEEECC-EEEEEEEEe-CeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEec-Ccccc---CCHHHH
Confidence 11111110 001111 124578888 589986554332221 333444456667788999999 99998 999999
Q ss_pred HHHHHHchhhcccCCCCCCCeEEEEEeCC------CCCchHHHHHHHHHHcCCCC-----ccEEE-ccC--cccHHHHHH
Q 004092 357 LRALLPLFSEVSVENESNSPIKVMILSGD------STSNYSVVIEAIAHNLHYPL-----GVVKH-MAA--EGDVDSVLN 422 (774)
Q Consensus 357 LeA~~~L~~~~p~~~~~~~~v~LvIvGG~------~~e~Y~~~L~~la~~lgL~~-----~~V~f-lG~--~~dl~~~l~ 422 (774)
++|+..+.+++|+ ...+++|+++|++ ...+|.+.+++++.+++... ..|.+ .|. .+++..+|+
T Consensus 283 l~A~~~ll~~~p~---~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~ 359 (460)
T cd03788 283 LLAFERLLERYPE---WRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYR 359 (460)
T ss_pred HHHHHHHHHhChh---hcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHH
Confidence 9999999888775 1123688988832 22245556666665543211 12554 454 489999999
Q ss_pred HcCEEEEcCccCcCCccHHHHHHHHcCCC----EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc-HH
Q 004092 423 TADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS-PF 497 (774)
Q Consensus 423 aaDI~V~PS~~E~qGfp~~llEAMA~G~P----VIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~-~~ 497 (774)
.||++|+||..| |||++++||||||+| ||+|+.+|..+. +.+|+++++.|++++|++|.+++++ + +.
T Consensus 360 ~aDv~v~pS~~E--g~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~---~~~e 431 (460)
T cd03788 360 AADVALVTPLRD--GMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTM---PLEE 431 (460)
T ss_pred hccEEEeCcccc--ccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcC---CHHH
Confidence 999999999998 899999999999999 999999888877 4579999999999999999999997 6 56
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004092 498 ARNIASIGRRSVKNLMALETIEGYAML 524 (774)
Q Consensus 498 r~~m~~~ar~~ak~fs~~~~a~~y~~L 524 (774)
++.+++++++.+++|++...++.|..-
T Consensus 432 ~~~~~~~~~~~v~~~~~~~w~~~~l~~ 458 (460)
T cd03788 432 RRERHRKLREYVRTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 778889999999999999999988753
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=1.3e-21 Score=218.04 Aligned_cols=333 Identities=10% Similarity=0.075 Sum_probs=218.7
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch----h---------------hhhh-c--CccEEE
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH----E---------------VWRN-I--GVPVAI 200 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~----~---------------~~~~-~--gi~i~~ 200 (774)
+.+||+++..+. .+|....+..++++|.++||++.++........ . .+.. . .-....
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 567888888876 458889999999999999998666654321110 0 0000 0 000000
Q ss_pred cc--------cchhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHH
Q 004092 201 LQ--------TGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWK 272 (774)
Q Consensus 201 l~--------~~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~ 272 (774)
.. ....+.++++..+||+||++++.. .+..+......++|++.++++... ...+.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~~~~td~~~---~~~~~------------ 144 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTYNVLTDFCL---HKIWV------------ 144 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeEEEeCCCCC---Ccccc------------
Confidence 00 013345567778999999987765 233334344557898866553111 11111
Q ss_pred HHHHhccEEEccCCcch--hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEeccccccccc
Q 004092 273 KVFNRATVVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (774)
Q Consensus 273 ~~~~~a~~vv~ps~~~~--~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~Kgi 350 (774)
+..++.+..++.... +...+++.+++.+++ +|++.. ......+..+++++++++++++++++|++....
T Consensus 145 --~~~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G-~p~~~~---f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~--- 215 (380)
T PRK13609 145 --HREVDRYFVATDHVKKVLVDIGVPPEQVVETG-IPIRSS---FELKINPDIIYNKYQLCPNKKILLIMAGAHGVL--- 215 (380)
T ss_pred --cCCCCEEEECCHHHHHHHHHcCCChhHEEEEC-cccChH---HcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCC---
Confidence 223444444433321 122345566777763 455431 111112345788899988776666666577666
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEc
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYG 430 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~P 430 (774)
|++..+++++.. .++ ++++++||.. ..+.+.+++++++++ + +|+++|+++++.++|++||++|.
T Consensus 216 k~~~~li~~l~~----~~~-------~~~viv~G~~-~~~~~~l~~~~~~~~--~-~v~~~g~~~~~~~l~~~aD~~v~- 279 (380)
T PRK13609 216 GNVKELCQSLMS----VPD-------LQVVVVCGKN-EALKQSLEDLQETNP--D-ALKVFGYVENIDELFRVTSCMIT- 279 (380)
T ss_pred cCHHHHHHHHhh----CCC-------cEEEEEeCCC-HHHHHHHHHHHhcCC--C-cEEEEechhhHHHHHHhccEEEe-
Confidence 888888888753 245 8988886532 123467777777544 4 79999999999999999999985
Q ss_pred CccCcCCccHHHHHHHHcCCCEEEcC-Ccccc----cccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 004092 431 SFLEEQTFPEILVKALCFRKPIIAPD-LSNIR----KYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIG 505 (774)
Q Consensus 431 S~~E~qGfp~~llEAMA~G~PVIatd-~ggi~----EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~a 505 (774)
+ +.|++++|||+||+|||+++ .+|.. +++.+ +|..+...|+++++++|.++++| ++.+++|++++
T Consensus 280 ---~--~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~~~~~~~~l~~~i~~ll~~---~~~~~~m~~~~ 349 (380)
T PRK13609 280 ---K--PGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAVVIRDDEEVFAKTEALLQD---DMKLLQMKEAM 349 (380)
T ss_pred ---C--CCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEEEECCHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence 3 34899999999999999975 55532 23333 35555567999999999999999 99999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 004092 506 RRSVKNLMALETIEGYAMLLENV 528 (774)
Q Consensus 506 r~~ak~fs~~~~a~~y~~L~e~l 528 (774)
++.++.++++++++.+.++++..
T Consensus 350 ~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 350 KSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHhCCCchHHHHHHHHHHhhhhh
Confidence 98888899999999998888654
No 73
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.88 E-value=1e-20 Score=214.35 Aligned_cols=303 Identities=13% Similarity=0.104 Sum_probs=190.6
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhh-----------HHHhhh------hhhhHHHHHHHHHHH
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR-----------ARNYAS------SGQLELLNDWKKVFN 276 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~-----------~~k~~~------~~~~~li~~~~~~~~ 276 (774)
.++|++|+|.+..+ .....+......+|+|+|.|.....+. +.++.. .......++.+....
T Consensus 147 ~~~dViH~HeWm~g-~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 147 EPAVVAHFHEWQAG-VGLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAH 225 (590)
T ss_pred CCCeEEEEcchhHh-HHHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHHh
Confidence 57999999999985 444444334667899999997433321 010000 001111223334556
Q ss_pred hccEEEccCCcchhh-cc--cCCCCCEEEeCCCCCCcccccccCch--------------hhHHHHHHhCCCCCCEEEEE
Q 004092 277 RATVVVFPDYVLPMM-YS--AFDAGNYYVIPGSPAKAWEADTNMDL--------------YNDTVRVKMGFKPDDLVIAI 339 (774)
Q Consensus 277 ~a~~vv~ps~~~~~i-~~--~v~~~ki~vIpg~gvd~~~~~~~~~~--------------~k~~lR~~lgl~~~~~vIl~ 339 (774)
.++.+...+..+... .. +.++++ ||| +|+|...+...... .+..++..++++++++++++
T Consensus 226 ~Ad~fttVS~it~~E~~~Ll~~~pd~--ViP-NGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f 302 (590)
T cd03793 226 CAHVFTTVSEITAYEAEHLLKRKPDV--VLP-NGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFF 302 (590)
T ss_pred hCCEEEECChHHHHHHHHHhCCCCCE--EeC-CCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEE
Confidence 677766665552221 11 222233 888 48888665443311 02234666788888888877
Q ss_pred -Eeccccc-ccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCC---------CchHHH---------------
Q 004092 340 -VGTQFMY-RGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---------SNYSVV--------------- 393 (774)
Q Consensus 340 -vGsrl~~-~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~---------e~Y~~~--------------- 393 (774)
+| |+.+ + ||++.+|+|+++|............=+-|+|+-+... +...+.
T Consensus 303 ~~G-R~e~~n---KGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~ 378 (590)
T cd03793 303 TAG-RYEFSN---KGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKR 378 (590)
T ss_pred Eee-cccccc---CCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhh
Confidence 57 9988 9 9999999999999764322111111133333332100 011111
Q ss_pred ----------------------------------------------------HHHHHHHcCCCCc-----cEEEcc-Cc-
Q 004092 394 ----------------------------------------------------IEAIAHNLHYPLG-----VVKHMA-AE- 414 (774)
Q Consensus 394 ----------------------------------------------------L~~la~~lgL~~~-----~V~flG-~~- 414 (774)
+-..+++++|-|. .|+|.. +.
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~ 458 (590)
T cd03793 379 LFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLS 458 (590)
T ss_pred hhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccC
Confidence 1112222233321 245554 11
Q ss_pred -------ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----ccccccC-ccEEEEc-------C
Q 004092 415 -------GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDR-VNGYLFP-------K 475 (774)
Q Consensus 415 -------~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~EiV~dg-~~G~Lv~-------~ 475 (774)
.+..++|+.||++|+||.+| |||++++||||||+|||+|+.+|+ .|++.++ ..|+++. +
T Consensus 459 ~~~~~~g~~y~E~~~g~dl~v~PS~yE--~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~ 536 (590)
T cd03793 459 STNPLLGLDYEEFVRGCHLGVFPSYYE--PWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPD 536 (590)
T ss_pred CCCCcCCcchHHHhhhceEEEeccccC--CCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchH
Confidence 34678999999999999999 899999999999999999999998 5666554 3577776 4
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 476 ENIKALTHIILQVITNGKISPFARNIASIGR--RSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 476 ~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar--~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
.++++++++|.++++. ..++.+...+. +.++.|+|++++..|.+.++-+++
T Consensus 537 e~v~~La~~m~~~~~~----~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 537 ESVQQLTQYMYEFCQL----SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 5688899999999854 56666655554 666889999999999999987764
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.87 E-value=1.1e-20 Score=214.84 Aligned_cols=283 Identities=11% Similarity=0.047 Sum_probs=191.5
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc---h-hhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc--
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG---T-LATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-- 287 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~---~-l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~-- 287 (774)
..-|+|++|.... ..+..++.+.....++.+.+|-. + ++..+. ..+.++ .....++.++|.+..
T Consensus 126 ~~~d~vwvhDYhl-~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp-----~r~~il----~gll~~dligF~t~~~~ 195 (456)
T TIGR02400 126 QPGDIVWVHDYHL-MLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLP-----WRRELL----EGLLAYDLVGFQTYDDA 195 (456)
T ss_pred CCCCEEEEecchh-hHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCC-----cHHHHH----HHHhcCCEEEECCHHHH
Confidence 3458999999988 47777776666677899999951 1 111110 001111 111122333332222
Q ss_pred -----------------chhhcccCCCCCEEEeCCCCCCcccccccCchh-----hHHHHHHhCCCCCCEEEEEEecccc
Q 004092 288 -----------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFM 345 (774)
Q Consensus 288 -----------------~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~-----k~~lR~~lgl~~~~~vIl~vGsrl~ 345 (774)
..+.+ .-...++.++| +|+|...|....... ...+|+++ +++++|+++| |+.
T Consensus 196 ~~Fl~~~~~~l~~~~~~~~~~~-~g~~~~v~viP-~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~Vg-RLd 269 (456)
T TIGR02400 196 RNFLSAVSRELGLETLPNGVES-GGRTVRVGAFP-IGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVD-RLD 269 (456)
T ss_pred HHHHHHHHHHhCCcccCCceEE-CCcEEEEEEec-CcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEcc-ccc
Confidence 00011 11234578888 589986554322211 22356655 3667999999 999
Q ss_pred cccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCC--chHHHHHHHHHHc----CC----CC-ccEEEc-cC
Q 004092 346 YRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTS--NYSVVIEAIAHNL----HY----PL-GVVKHM-AA 413 (774)
Q Consensus 346 ~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e--~Y~~~L~~la~~l----gL----~~-~~V~fl-G~ 413 (774)
+. ||++.+++|++.+.+++|+ ...++.|+++|++.+. .....+++.++++ +- .+ ..|.++ |.
T Consensus 270 ~~---KGi~~ll~A~~~ll~~~p~---~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~ 343 (456)
T TIGR02400 270 YS---KGLPERLLAFERFLEEHPE---WRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRS 343 (456)
T ss_pred cc---cCHHHHHHHHHHHHHhCcc---ccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCC
Confidence 98 9999999999999888876 1223678888743221 1223344444432 11 11 014444 43
Q ss_pred --cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCC----EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHH
Q 004092 414 --EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQ 487 (774)
Q Consensus 414 --~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~P----VIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~ 487 (774)
.+++..+|++||++|+||..| |||++++||||||+| ||+|+.+|..+.+. +|++++|.|++++|++|.+
T Consensus 344 ~~~~el~aly~aaDv~vv~S~~E--G~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~ 418 (456)
T TIGR02400 344 YDREELMALYRAADVGLVTPLRD--GMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIAR 418 (456)
T ss_pred CCHHHHHHHHHhCcEEEECcccc--ccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHH
Confidence 389999999999999999999 899999999999999 99999999888774 6999999999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004092 488 VITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLL 525 (774)
Q Consensus 488 Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~ 525 (774)
++++. +++++++.+.+++++.++++...++.|.+-+
T Consensus 419 aL~~~--~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 419 ALTMP--LEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHcCC--HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 99850 4667788888999998899999999988644
No 75
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.87 E-value=2.3e-20 Score=207.75 Aligned_cols=372 Identities=15% Similarity=0.149 Sum_probs=238.0
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHH---------cCCeEEEEEcCCCcc------hhhhhhcC--ccEEE----c
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALRE---------IGYAIQVYSLEDGRA------HEVWRNIG--VPVAI----L 201 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~---------~G~eV~V~t~~~~~~------~~~~~~~g--i~i~~----l 201 (774)
-..+++++.+.+..||.+......+-.+.. .|++|.+++...... ........ .++.. +
T Consensus 33 ~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~l 112 (495)
T KOG0853|consen 33 PFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDWL 112 (495)
T ss_pred cchhheeeccccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEeec
Confidence 346689999999999999999999999999 999999998744322 11111111 11111 0
Q ss_pred ccch------------------hHHHHhhh-cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHH-hhh
Q 004092 202 QTGR------------------EKASFVNW-LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARN-YAS 261 (774)
Q Consensus 202 ~~~~------------------~l~~~i~~-~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k-~~~ 261 (774)
+... .+....+| .++|.|++.+..++..+...+..+...+++.+.+|.......-.. ...
T Consensus 113 P~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~p~~~~~i~~~~h~~~~lla~r~g~~~ 192 (495)
T KOG0853|consen 113 PRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSGPDVIIKIYFYCHFPDSLLAKRLGVLK 192 (495)
T ss_pred CcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcCCcccceeEEeccchHHHhccccCccc
Confidence 0000 00111233 467888888776654454444333334678888886221100000 000
Q ss_pred hhhhHHHHHHH-HHHHhccEEEccCCcc-hhhc---ccCCCCCE-EEeCCCCCCccccc--ccCch-h-hHHHHHHhCCC
Q 004092 262 SGQLELLNDWK-KVFNRATVVVFPDYVL-PMMY---SAFDAGNY-YVIPGSPAKAWEAD--TNMDL-Y-NDTVRVKMGFK 331 (774)
Q Consensus 262 ~~~~~li~~~~-~~~~~a~~vv~ps~~~-~~i~---~~v~~~ki-~vIpg~gvd~~~~~--~~~~~-~-k~~lR~~lgl~ 331 (774)
......+...+ .....+......++.. ..+. ..++..++ ...| .+|...+. -+.+. . +...|...+..
T Consensus 193 ~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~--ei~~s~~~~~~~~~~~~~~~~~r~~~~v~ 270 (495)
T KOG0853|consen 193 VLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYP--EIDGSWFTYGQYESHLELRLPVRLYRGVS 270 (495)
T ss_pred eeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeec--cccchhccccccccchhcccccceeeeec
Confidence 00011111111 1122222222222221 0110 11122212 2223 23321111 11111 1 33445566777
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe--C-----CCCCchHHHHHHHHHHcCCC
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--G-----DSTSNYSVVIEAIAHNLHYP 404 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG--G-----~~~e~Y~~~L~~la~~lgL~ 404 (774)
..+.+..-+. ++.+. |++.++++|+..+....++ ......+++++| | ...-.|...+..+++++++.
T Consensus 271 ~~d~~~~siN-~~~pg---kd~~l~l~a~~~~~~~i~~--~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~ 344 (495)
T KOG0853|consen 271 GIDRFFPSIN-RFEPG---KDQDLALPAFTLLHDSIPE--PSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLL 344 (495)
T ss_pred ccceEeeeee-ecCCC---CCceeehhhHHhhhcccCC--CCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCcc
Confidence 7787888888 99999 9999999999999887643 233458999999 5 23346788899999999995
Q ss_pred CccEEEccCcccHHHHHHHcCE---EEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHH--
Q 004092 405 LGVVKHMAAEGDVDSVLNTADV---VIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIK-- 479 (774)
Q Consensus 405 ~~~V~flG~~~dl~~~l~aaDI---~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e-- 479 (774)
...|.|+....+...|..++|. ++.|.. | .||++++|||+||+|||||+.||..|+|.++.+|+++++ +.+
T Consensus 345 g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~-E--~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp-~~e~~ 420 (495)
T KOG0853|consen 345 GQFVWFLPSTTRVAKYRLAADTKGVLYQPAN-E--HFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDP-GQEAV 420 (495)
T ss_pred CceEEEecCCchHHHHHHHHhcceEEecCCC-C--CccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCC-chHHH
Confidence 4388888877666666666664 334555 7 799999999999999999999999999999999999999 556
Q ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHh
Q 004092 480 -ALTHIILQVITNGKISPFARNIASIGRRSVKN-LMALETIEGYAMLLENVL 529 (774)
Q Consensus 480 -~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~-fs~~~~a~~y~~L~e~ll 529 (774)
.+|++|.++..| ++.+.+|+++|++.+++ |+|..+.++..++.....
T Consensus 421 ~~~a~~~~kl~~~---p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 421 AELADALLKLRRD---PELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 699999999999 99999999999999955 999888888888877543
No 76
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.85 E-value=9.2e-20 Score=204.41 Aligned_cols=335 Identities=10% Similarity=0.088 Sum_probs=214.4
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCC---eEEEEEcCC--Cc-chh---------------hhhh-cCccEEE
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGY---AIQVYSLED--GR-AHE---------------VWRN-IGVPVAI 200 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~---eV~V~t~~~--~~-~~~---------------~~~~-~gi~i~~ 200 (774)
+.+|++++..+. .+|--.....|.++|.+.|. ++.++.... .+ ... .|.. +...-..
T Consensus 4 ~~~~vlil~~~~-G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~~ 82 (391)
T PRK13608 4 QNKKILIITGSF-GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPDK 82 (391)
T ss_pred CCceEEEEECCC-CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCchh
Confidence 346888888765 45667788889999998864 465554322 11 111 0100 0000000
Q ss_pred c-------ccchhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHH
Q 004092 201 L-------QTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK 273 (774)
Q Consensus 201 l-------~~~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~ 273 (774)
+ .....+.++++..+||+|+++++.. .+..+......++|++...++.. . ...+.
T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~--~~~~l~~~~~~~iP~~~v~td~~-~--~~~w~------------- 144 (391)
T PRK13608 83 LDKCFYKYYGLNKLINLLIKEKPDLILLTFPTP--VMSVLTEQFNINIPVATVMTDYR-L--HKNWI------------- 144 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHH--HHHHHHHhcCCCCCEEEEeCCCC-c--ccccc-------------
Confidence 0 0113455667789999999987755 34444433345789865444211 0 11111
Q ss_pred HHHhccEEEccCCcc--hhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccc
Q 004092 274 VFNRATVVVFPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWL 351 (774)
Q Consensus 274 ~~~~a~~vv~ps~~~--~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiK 351 (774)
...++.+.+++... .+...+++.+++.++. +|++.. ......+...+.++++++++++++++||++... |
T Consensus 145 -~~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~G-iPv~~~---f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~---k 216 (391)
T PRK13608 145 -TPYSTRYYVATKETKQDFIDVGIDPSTVKVTG-IPIDNK---FETPIDQKQWLIDNNLDPDKQTILMSAGAFGVS---K 216 (391)
T ss_pred -cCCCCEEEECCHHHHHHHHHcCCCHHHEEEEC-eecChH---hcccccHHHHHHHcCCCCCCCEEEEECCCcccc---h
Confidence 12344444444332 1223355667777754 566542 111122456677899988777666655588766 8
Q ss_pred cHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcC
Q 004092 352 EHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS 431 (774)
Q Consensus 352 g~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS 431 (774)
+++.+++++. +..++ +++++++|... +..+++.+.++..+ +|.++|+++++.++|++||++|..
T Consensus 217 ~~~~li~~~~---~~~~~-------~~~vvv~G~~~----~l~~~l~~~~~~~~-~v~~~G~~~~~~~~~~~aDl~I~k- 280 (391)
T PRK13608 217 GFDTMITDIL---AKSAN-------AQVVMICGKSK----ELKRSLTAKFKSNE-NVLILGYTKHMNEWMASSQLMITK- 280 (391)
T ss_pred hHHHHHHHHH---hcCCC-------ceEEEEcCCCH----HHHHHHHHHhccCC-CeEEEeccchHHHHHHhhhEEEeC-
Confidence 9988999863 23344 78877765332 11233434344555 799999999999999999999973
Q ss_pred ccCcCCccHHHHHHHHcCCCEEEcC-Cccc----ccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 004092 432 FLEEQTFPEILVKALCFRKPIIAPD-LSNI----RKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGR 506 (774)
Q Consensus 432 ~~E~qGfp~~llEAMA~G~PVIatd-~ggi----~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar 506 (774)
..|++++|||++|+|+|+++ .+|- ..++.+...|+. .+|+++++++|.++++| ++.+++|+++++
T Consensus 281 -----~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~--~~~~~~l~~~i~~ll~~---~~~~~~m~~~~~ 350 (391)
T PRK13608 281 -----PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI--ADTPEEAIKIVASLTNG---NEQLTNMISTME 350 (391)
T ss_pred -----CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE--eCCHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 24889999999999999985 4431 223345445655 45899999999999999 999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 507 RSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 507 ~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
+.++.++++++++.+.++++...+
T Consensus 351 ~~~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 351 QDKIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HhcCCCCHHHHHHHHHHHhhhhhh
Confidence 999889999999999999987644
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.85 E-value=1.5e-19 Score=183.24 Aligned_cols=222 Identities=20% Similarity=0.191 Sum_probs=162.5
Q ss_pred EEEecCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 148 ALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 148 alV~~~L~--~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
+++..... .||.+++...+++.|.+.||+|++++ .....+...++..+||+||+|+..
T Consensus 2 ~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~--------------------~~~~~~~~~~~~~~~D~i~~~~~~ 61 (229)
T cd01635 2 LLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA--------------------LLLLLLLRILRGFKPDVVHAHGYY 61 (229)
T ss_pred eeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE--------------------echHHHHHHHhhcCCCEEEEcCCC
Confidence 34444443 78999999999999999999999998 122334455667899999999988
Q ss_pred hhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCC
Q 004092 226 AKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPG 305 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg 305 (774)
...... ....+..++|++++.|+......... . . .........+
T Consensus 62 ~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~~~---~--~---~~~~~~~~~~--------------------------- 105 (229)
T cd01635 62 PAPLAL-LLAARLLGIPLVLTVHGVNRSLLEGV---P--L---SLLALSIGLA--------------------------- 105 (229)
T ss_pred cHHHHH-HHHHhhCCCCEEEEEcCccHhhcccC---c--H---HHHHHHHhhc---------------------------
Confidence 743333 22234667899999996332211000 0 0 0000000000
Q ss_pred CCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-C
Q 004092 306 SPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-G 384 (774)
Q Consensus 306 ~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G 384 (774)
...++| ++.+. ||++.+++|+..+.++.|+ ++++++| +
T Consensus 106 ------------------------------~~~~~g-~~~~~---k~~~~~~~a~~~l~~~~~~-------~~~~i~G~~ 144 (229)
T cd01635 106 ------------------------------DKVFVG-RLAPE---KGLDDLIEAFALLKERGPD-------LKLVIAGDG 144 (229)
T ss_pred ------------------------------ceEEEE-eeccc---CCHHHHHHHHHHHHHhCCC-------eEEEEEeCC
Confidence 011888 78887 9999999999999988877 9999999 5
Q ss_pred CCCCchHHHHHHHHHHcCCCCccEEEccCc---ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc
Q 004092 385 DSTSNYSVVIEAIAHNLHYPLGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR 461 (774)
Q Consensus 385 ~~~e~Y~~~L~~la~~lgL~~~~V~flG~~---~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~ 461 (774)
+.. ...+..+.+++..+ +|.++|+. +++..+++.||++++||..| ++|++++|||+||+|||+|+.++..
T Consensus 145 ~~~----~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e--~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 145 PER----EYLEELLAALLLLD-RVIFLGGLDPEELLALLLAAADVFVLPSLRE--GFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred CCh----HHHHHHHHhcCCcc-cEEEeCCCCcHHHHHHHhhcCCEEEeccccc--CcChHHHHHHhCCCCEEEcCCCCcc
Confidence 543 33444466677777 89999983 55666677799999999998 8999999999999999999999999
Q ss_pred cccccCccEEEE
Q 004092 462 KYVDDRVNGYLF 473 (774)
Q Consensus 462 EiV~dg~~G~Lv 473 (774)
|++.++.+|+++
T Consensus 218 e~i~~~~~g~~~ 229 (229)
T cd01635 218 EIVEDGLTGLLV 229 (229)
T ss_pred eEEECCCceEEC
Confidence 999998899874
No 78
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=3.5e-18 Score=193.11 Aligned_cols=357 Identities=17% Similarity=0.189 Sum_probs=235.2
Q ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhh---------------------------cCccEEEcccc--
Q 004092 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRN---------------------------IGVPVAILQTG-- 204 (774)
Q Consensus 154 L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~---------------------------~gi~i~~l~~~-- 204 (774)
...||..-++..+.++|++.|++|.|+.+..+.....+.. .+++...+...
T Consensus 14 vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lid~~~~ 93 (487)
T COG0297 14 VKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKDGGVDLYLIDNPAL 93 (487)
T ss_pred cccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeecccCCCcEEEecChhh
Confidence 4579999999999999999999999998765332211111 00222222100
Q ss_pred --h-------------hHHHH-------hhh----cCccEEEEcCCchhHHHHHHHhCC---CCCCCEEEEEcCchhhh-
Q 004092 205 --R-------------EKASF-------VNW----LNYDGILVNSLEAKVVISNIMQEP---FKSLPLVWTIHEGTLAT- 254 (774)
Q Consensus 205 --~-------------~l~~~-------i~~----~~~DIIhvhs~~~~~~l~~Ll~~~---~~~ipvI~tiHg~~l~~- 254 (774)
+ ++..+ ... ..|||||+|++.+. ++..++... ...+|.|+|+|.-..+.
T Consensus 94 f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~-L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~ 172 (487)
T COG0297 94 FKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTG-LLPAYLKQRYRSGYIIPTVFTIHNLAYQGL 172 (487)
T ss_pred cCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHH-HHHHHHhhcccccccCCeEEEEeeceeecc
Confidence 0 01111 111 36999999999994 666666443 45789999999711110
Q ss_pred -h--H--------HHhhhhhh--hHHHHHHHHHHHhccEEEc--cCCcchhhcccCC----------CCCEEEeCCCCCC
Q 004092 255 -R--A--------RNYASSGQ--LELLNDWKKVFNRATVVVF--PDYVLPMMYSAFD----------AGNYYVIPGSPAK 309 (774)
Q Consensus 255 -~--~--------~k~~~~~~--~~li~~~~~~~~~a~~vv~--ps~~~~~i~~~v~----------~~ki~vIpg~gvd 309 (774)
+ . ..+..-.. ..-++..+.....++.+.. |++......+... ..++.-|- +|+|
T Consensus 173 ~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~-NgiD 251 (487)
T COG0297 173 FRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGIL-NGID 251 (487)
T ss_pred cchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEE-eeEE
Confidence 0 0 01110000 0011223333444443333 2222111111110 12333333 1333
Q ss_pred cccc---------cccC------chh-hHHHHHHhCCCC--CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCC
Q 004092 310 AWEA---------DTNM------DLY-NDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (774)
Q Consensus 310 ~~~~---------~~~~------~~~-k~~lR~~lgl~~--~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~ 371 (774)
.... ..++ +.. +..+++.+|++. +.+++.++| |+..+ ||++++++|+..+.++.
T Consensus 252 ~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vs-Rl~~Q---KG~dl~~~~i~~~l~~~---- 323 (487)
T COG0297 252 YDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVS-RLTAQ---KGLDLLLEAIDELLEQG---- 323 (487)
T ss_pred ecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEee-ccccc---cchhHHHHHHHHHHHhC----
Confidence 2111 1111 222 567788899983 568999999 88889 99999999999999875
Q ss_pred CCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCccc-HHHHHHHcCEEEEcCccCcCCccHHHHHHHHcC
Q 004092 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGD-VDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (774)
Q Consensus 372 ~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~d-l~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G 449 (774)
.+++++| | +..|.+.+..+++.+.. . .....|+.+. ...+++.||++++||++| ++|++=++||..|
T Consensus 324 -----~~~vilG~g--d~~le~~~~~la~~~~~-~-~~~~i~~~~~la~~i~agaD~~lmPSrfE--PcGL~ql~amryG 392 (487)
T COG0297 324 -----WQLVLLGTG--DPELEEALRALASRHPG-R-VLVVIGYDEPLAHLIYAGADVILMPSRFE--PCGLTQLYAMRYG 392 (487)
T ss_pred -----ceEEEEecC--cHHHHHHHHHHHHhcCc-e-EEEEeeecHHHHHHHHhcCCEEEeCCcCc--CCcHHHHHHHHcC
Confidence 7999999 7 56678889999996554 2 3445566644 467899999999999999 7999999999999
Q ss_pred CCEEEcCCccccccccc--------CccEEEEcCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHhcCHHHHHHH
Q 004092 450 KPIIAPDLSNIRKYVDD--------RVNGYLFPKENIKALTHIILQVITNGKISPF-ARNIASIGRRSVKNLMALETIEG 520 (774)
Q Consensus 450 ~PVIatd~ggi~EiV~d--------g~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~-r~~m~~~ar~~ak~fs~~~~a~~ 520 (774)
+++|+..+||..+.|.+ ..+|+++.+.|+++++.+|.+.+.-.+.++. ++.+..++.. .+|+|+..++.
T Consensus 393 tvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~ 470 (487)
T COG0297 393 TLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKE 470 (487)
T ss_pred CcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHH
Confidence 99999999999999975 4689999999999999999988763222555 6666655554 67999999999
Q ss_pred HHHHHHHHhcCCC
Q 004092 521 YAMLLENVLKLPS 533 (774)
Q Consensus 521 y~~L~e~ll~~~~ 533 (774)
|.++|+.+++.+-
T Consensus 471 y~~lY~~~~~~~~ 483 (487)
T COG0297 471 YVELYKPLLSKPF 483 (487)
T ss_pred HHHHHHHHhcccc
Confidence 9999999987543
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.83 E-value=2.7e-19 Score=200.03 Aligned_cols=271 Identities=16% Similarity=0.120 Sum_probs=176.8
Q ss_pred HHHHhhhcCccEEEEcCCchhH----HHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEE
Q 004092 207 KASFVNWLNYDGILVNSLEAKV----VISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVV 282 (774)
Q Consensus 207 l~~~i~~~~~DIIhvhs~~~~~----~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv 282 (774)
+.++++..+||+||++++.... .+..+......++|++.++++.... ...+.. ..++.+.
T Consensus 92 l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~--~~~w~~--------------~~~d~~~ 155 (382)
T PLN02605 92 VAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC--HPTWFH--------------KGVTRCF 155 (382)
T ss_pred HHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc--Cccccc--------------CCCCEEE
Confidence 4456777899999998866321 1222211123468988777642101 111111 2344444
Q ss_pred ccCCcc--hhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHH
Q 004092 283 FPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRAL 360 (774)
Q Consensus 283 ~ps~~~--~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~ 360 (774)
+++... .+...+++.+++.+++ +|++...... ...+..+|+++|++++.++|+++| +.... |++..+++++
T Consensus 156 ~~s~~~~~~l~~~g~~~~ki~v~g-~~v~~~f~~~--~~~~~~~r~~~gl~~~~~~il~~G-g~~g~---~~~~~li~~l 228 (382)
T PLN02605 156 CPSEEVAKRALKRGLEPSQIRVYG-LPIRPSFARA--VRPKDELRRELGMDEDLPAVLLMG-GGEGM---GPLEETARAL 228 (382)
T ss_pred ECCHHHHHHHHHcCCCHHHEEEEC-cccCHhhccC--CCCHHHHHHHcCCCCCCcEEEEEC-CCccc---ccHHHHHHHH
Confidence 444332 2223356677888875 6776521111 123567899999999999999999 43333 8898889998
Q ss_pred HHchh----hcccCCCCCCCeE-EEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCc
Q 004092 361 LPLFS----EVSVENESNSPIK-VMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEE 435 (774)
Q Consensus 361 ~~L~~----~~p~~~~~~~~v~-LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~ 435 (774)
..+.. ..++ .+ ++++|.. . .+.+.+++. .... +|.++|+++++.++|++||++|.++
T Consensus 229 ~~~~~~~~~~~~~-------~~~~vi~G~~-~-~~~~~L~~~----~~~~-~v~~~G~~~~~~~l~~aaDv~V~~~---- 290 (382)
T PLN02605 229 GDSLYDKNLGKPI-------GQVVVICGRN-K-KLQSKLESR----DWKI-PVKVRGFVTNMEEWMGACDCIITKA---- 290 (382)
T ss_pred HHhhccccccCCC-------ceEEEEECCC-H-HHHHHHHhh----cccC-CeEEEeccccHHHHHHhCCEEEECC----
Confidence 76531 1233 55 4555522 1 122333332 2334 6999999999999999999999865
Q ss_pred CCccHHHHHHHHcCCCEEEcCC------cccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 004092 436 QTFPEILVKALCFRKPIIAPDL------SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (774)
Q Consensus 436 qGfp~~llEAMA~G~PVIatd~------ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a 509 (774)
.|++++||||||+|||+++. ++.. .+.++..|+++ .|+++++++|.+++++. ++.+++|++++++.+
T Consensus 291 --g~~ti~EAma~g~PvI~~~~~pgqe~gn~~-~i~~~g~g~~~--~~~~~la~~i~~ll~~~--~~~~~~m~~~~~~~~ 363 (382)
T PLN02605 291 --GPGTIAEALIRGLPIILNGYIPGQEEGNVP-YVVDNGFGAFS--ESPKEIARIVAEWFGDK--SDELEAMSENALKLA 363 (382)
T ss_pred --CcchHHHHHHcCCCEEEecCCCccchhhHH-HHHhCCceeec--CCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhc
Confidence 37899999999999999984 4443 34444457654 69999999999999751 567778999999998
Q ss_pred HhcCHHHHHHHHHHHH
Q 004092 510 KNLMALETIEGYAMLL 525 (774)
Q Consensus 510 k~fs~~~~a~~y~~L~ 525 (774)
+..+.+.+++...++.
T Consensus 364 ~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 364 RPEAVFDIVHDLHELV 379 (382)
T ss_pred CCchHHHHHHHHHHHh
Confidence 8888888887766553
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.82 E-value=4e-19 Score=213.82 Aligned_cols=288 Identities=12% Similarity=0.118 Sum_probs=195.4
Q ss_pred CccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc---
Q 004092 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV--- 287 (774)
Q Consensus 215 ~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~--- 287 (774)
.=|+|.+|.... ..+..++.+.....++.+.+|.. .++..+.. ...++. ....++.++|.+..
T Consensus 147 ~~d~vWvhDYhL-~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~-----r~~il~----gll~aDligF~t~~y~r 216 (797)
T PLN03063 147 EGDVVWCHDYHL-MFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPS-----RSELLR----AVLTADLIGFHTYDFAR 216 (797)
T ss_pred CCCEEEEecchh-hhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCC-----HHHHHH----HHhcCCEEEeCCHHHHH
Confidence 348999999888 47777777777888999999961 11111100 001110 11112222222111
Q ss_pred ---------------chhhcccCCCCCEEEeCCCCCCcccccccCchh--h---HHHHHHhCCCCCCEEEEEEecccccc
Q 004092 288 ---------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY--N---DTVRVKMGFKPDDLVIAIVGTQFMYR 347 (774)
Q Consensus 288 ---------------~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~--k---~~lR~~lgl~~~~~vIl~vGsrl~~~ 347 (774)
...+...-...++.++| +|+|...+....... + ..+++.++ ++++|+++| |+.+.
T Consensus 217 ~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP-~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~Vg-RLd~~ 291 (797)
T PLN03063 217 HFLSACTRILGVEGTHEGVVDQGKVTRVAVFP-IGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVD-RLDMI 291 (797)
T ss_pred HHHHHHHHHhCccccCCceEECCeEEEEEEEe-cccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEec-ccccc
Confidence 00011111124577888 588875554322211 1 23344433 567999999 99999
Q ss_pred cccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCC--chHHHHHHHHHHcC--CCC--c-----cEEEcc-Cc-
Q 004092 348 GLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTS--NYSVVIEAIAHNLH--YPL--G-----VVKHMA-AE- 414 (774)
Q Consensus 348 KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e--~Y~~~L~~la~~lg--L~~--~-----~V~flG-~~- 414 (774)
||+..+++|+..+.+++|+ ...++.|+.++++.+. ...+.+++.++++. +.. + .|.+++ .+
T Consensus 292 ---KGi~~lL~Afe~lL~~~P~---~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~ 365 (797)
T PLN03063 292 ---KGIPQKYLAFEKFLEENPE---WRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVD 365 (797)
T ss_pred ---cCHHHHHHHHHHHHHhCcc---ccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCC
Confidence 9999999999999988887 1112556655544321 22234555555442 211 0 133333 33
Q ss_pred -ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCC----EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 415 -GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 415 -~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~P----VIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
+++..+|++||+||+||..| ||+++++||||||+| +|+|+.+|..+.+ +.+|++++|.|++++|++|.+++
T Consensus 366 ~~el~aly~~ADvfvvtSlrE--GmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 366 FNYLCALYAITDVMLVTSLRD--GMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred HHHHHHHHHhCCEEEeCcccc--ccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHH
Confidence 78999999999999999999 999999999999999 9999999999876 44699999999999999999999
Q ss_pred H-cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 490 T-NGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 490 ~-d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
+ + ++++++..+.++++++++++...++.+.+.++++..
T Consensus 442 ~m~---~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 442 NMS---DEERETRHRHNFQYVKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred hCC---HHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhh
Confidence 9 5 577778888899999999999999999998887754
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.78 E-value=5e-18 Score=204.23 Aligned_cols=284 Identities=9% Similarity=0.080 Sum_probs=191.1
Q ss_pred CccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc---
Q 004092 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV--- 287 (774)
Q Consensus 215 ~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~--- 287 (774)
.-|+|.+|..... .+..++.++....++-+.+|-. .++..+. ....++. ....++.++|....
T Consensus 133 ~~d~vwvhDYhl~-l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp-----~~~~ll~----~ll~~Dligf~t~~~~r 202 (726)
T PRK14501 133 PGDVVWVHDYQLM-LLPAMLRERLPDARIGFFLHIPFPSFEVFRLLP-----WREEILE----GLLGADLIGFHTYDYVR 202 (726)
T ss_pred CCCEEEEeCchhh-hHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCC-----ChHHHHH----HHhcCCeEEeCCHHHHH
Confidence 4589999999884 7777776667778999999961 1111000 0011110 11112222222111
Q ss_pred ----------------chhhcccCCCCCEEEeCCCCCCcccccccCchh-----hHHHHHHhCCCCCCEEEEEEeccccc
Q 004092 288 ----------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMY 346 (774)
Q Consensus 288 ----------------~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~-----k~~lR~~lgl~~~~~vIl~vGsrl~~ 346 (774)
....+.+ ...++.++| +|+|...+....... .+.+|+.+ +++++|+++| |+.+
T Consensus 203 ~Fl~~~~~~l~~~~~~~~~~~~g-r~~~v~v~p-~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~Vg-Rl~~ 276 (726)
T PRK14501 203 HFLSSVLRVLGYETELGEIRLGG-RIVRVDAFP-MGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSID-RLDY 276 (726)
T ss_pred HHHHHHHHHcCCccCCCeEEECC-EEEEEEEEE-CeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEec-Cccc
Confidence 0001111 113477888 589886654332211 12234442 4667999999 9999
Q ss_pred ccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCC---C---chHHHHHHHHHHcC-------CCCccEEEccC
Q 004092 347 RGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---S---NYSVVIEAIAHNLH-------YPLGVVKHMAA 413 (774)
Q Consensus 347 ~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~---e---~Y~~~L~~la~~lg-------L~~~~V~flG~ 413 (774)
. ||+..+++|+..+.+++|+ ...+++|+++|++.+ + ++...+++++.+.+ ... .+.+.|.
T Consensus 277 ~---Kgi~~~l~A~~~ll~~~p~---~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p-v~~~~~~ 349 (726)
T PRK14501 277 T---KGIPRRLLAFERFLEKNPE---WRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP-IHYFYRS 349 (726)
T ss_pred c---cCHHHHHHHHHHHHHhCcc---ccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce-EEEEeCC
Confidence 9 9999999999999888885 122378999983322 2 33444555544332 112 3456665
Q ss_pred c--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHc-----CCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHH
Q 004092 414 E--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF-----RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIIL 486 (774)
Q Consensus 414 ~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~-----G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~ 486 (774)
. +++..+|++||++|+||..| |||++++||||| |.||++...|++.+++ .|++++|.|++++|++|.
T Consensus 350 ~~~~~l~~ly~~aDv~v~~S~~E--G~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~ 423 (726)
T PRK14501 350 LPFEELVALYRAADVALVTPLRD--GMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIK 423 (726)
T ss_pred CCHHHHHHHHHhccEEEeccccc--ccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHH
Confidence 4 89999999999999999999 999999999999 5577777778888775 389999999999999999
Q ss_pred HHHHcCCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 487 QVITNGKIS-PFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 487 ~Ll~d~~~~-~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
+++++ + +.+.+..+++++.+++|+|..+++.|.+.|+++..
T Consensus 424 ~~l~~---~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 424 RALEM---PEEEQRERMQAMQERLRRYDVHKWASDFLDELREAAE 465 (726)
T ss_pred HHHcC---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99987 5 34455556788889999999999999999988743
No 82
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.77 E-value=5.1e-17 Score=181.08 Aligned_cols=333 Identities=16% Similarity=0.051 Sum_probs=197.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cchhhhhhcCccEE-Ec---------------cc-----
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVA-IL---------------QT----- 203 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~-~~~~~~~~~gi~i~-~l---------------~~----- 203 (774)
+..++++....++....--.++..|.+.||.|..+....- ............+. .+ +.
T Consensus 5 ~~~~~~~~~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
T cd04950 5 PDILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPRGRDWVRVVLRLRAALRRPRRLDPLIPARRRRLL 84 (373)
T ss_pred CeEEEecccCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCCCCcccEEeeecccccccCccccCccccchhhhHH
Confidence 3455665667777777778889999999999998876532 10000000000000 00 00
Q ss_pred chhHHHHhh------hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHh
Q 004092 204 GREKASFVN------WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNR 277 (774)
Q Consensus 204 ~~~l~~~i~------~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~ 277 (774)
...+...+. ..+..+++.+.+... .+... ..+.++||.+++...... .. ........+..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~~P~~~-~~~~~----~~~~~~Vyd~~D~~~~~~-----~~-~~~~~~~e~~~~~~ 153 (373)
T cd04950 85 RLLLNALLFWAQLELGFGRPILWYYTPYTL-PVAAL----LQASLVVYDCVDDLSAFP-----GG-PPELLEAERRLLKR 153 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCccHH-HHHhh----cCCCeEEEEcccchhccC-----CC-CHHHHHHHHHHHHh
Confidence 011122222 234456556555552 33322 455789999986321110 00 01112344556777
Q ss_pred ccEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHH
Q 004092 278 ATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (774)
Q Consensus 278 a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLL 357 (774)
++.++..+..+........ .++.+|| +|+|...|......... .+ . ....++++++|+| ++.+. ++++++.
T Consensus 154 ad~vi~~S~~l~~~~~~~~-~~i~~i~-ngvd~~~f~~~~~~~~~-~~-~-~~~~~~~~i~y~G-~l~~~---~d~~ll~ 224 (373)
T cd04950 154 ADLVFTTSPSLYEAKRRLN-PNVVLVP-NGVDYEHFAAARDPPPP-PA-D-LAALPRPVIGYYG-AIAEW---LDLELLE 224 (373)
T ss_pred CCEEEECCHHHHHHHhhCC-CCEEEcc-cccCHHHhhcccccCCC-hh-H-HhcCCCCEEEEEe-ccccc---cCHHHHH
Confidence 8877766665443333333 6888998 48887544332211100 01 1 1234567999999 66664 7776554
Q ss_pred HHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccC
Q 004092 358 RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLE 434 (774)
Q Consensus 358 eA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E 434 (774)
+++. ..|+ ++|+|+| |+.... ....... + +|+++|.+ +++..+|+.+|++++|+..+
T Consensus 225 ~la~----~~p~-------~~~vliG~~~~~~~-------~~~~~~~-~-nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~ 284 (373)
T cd04950 225 ALAK----ARPD-------WSFVLIGPVDVSID-------PSALLRL-P-NVHYLGPKPYKELPAYLAGFDVAILPFRLN 284 (373)
T ss_pred HHHH----HCCC-------CEEEEECCCcCccC-------hhHhccC-C-CEEEeCCCCHHHHHHHHHhCCEEecCCccc
Confidence 4433 4566 9999999 622211 1111123 3 69999987 89999999999999998532
Q ss_pred c---CCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 004092 435 E---QTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (774)
Q Consensus 435 ~---qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~ 511 (774)
+ .++|++++||||||+|||+|+.+.+ +.....+++ .++|+++++++|.+++.+ +...... .++..+++
T Consensus 285 ~~~~~~~P~Kl~EylA~G~PVVat~~~~~---~~~~~~~~~-~~~d~~~~~~ai~~~l~~---~~~~~~~--~~~~~~~~ 355 (373)
T cd04950 285 ELTRATSPLKLFEYLAAGKPVVATPLPEV---RRYEDEVVL-IADDPEEFVAAIEKALLE---DGPARER--RRLRLAAQ 355 (373)
T ss_pred hhhhcCCcchHHHHhccCCCEEecCcHHH---HhhcCcEEE-eCCCHHHHHHHHHHHHhc---CCchHHH--HHHHHHHH
Confidence 1 2689999999999999999987644 444433444 456999999999998765 3222211 12235688
Q ss_pred cCHHHHHHHHHHHHHH
Q 004092 512 LMALETIEGYAMLLEN 527 (774)
Q Consensus 512 fs~~~~a~~y~~L~e~ 527 (774)
++|+..++++.+.+++
T Consensus 356 ~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 356 NSWDARAAEMLEALQE 371 (373)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999866654
No 83
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.75 E-value=1.3e-16 Score=177.18 Aligned_cols=334 Identities=13% Similarity=0.112 Sum_probs=195.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCC-C-cchhhhhhcCccEE-E--ccc------------chhH
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLED-G-RAHEVWRNIGVPVA-I--LQT------------GREK 207 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~-G~eV~V~t~~~-~-~~~~~~~~~gi~i~-~--l~~------------~~~l 207 (774)
||++++++ -..-..+..+.+.|.+. +.++.++..+. . ......+.++++.. . +.. ...+
T Consensus 2 ~i~~~~gt---r~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (365)
T TIGR00236 2 KVSIVLGT---RPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGL 78 (365)
T ss_pred eEEEEEec---CHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHH
Confidence 55555553 22233456677778765 55665555432 1 12223334555411 1 111 0234
Q ss_pred HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHH-HhccEEEccCC
Q 004092 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVF-NRATVVVFPDY 286 (774)
Q Consensus 208 ~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~-~~a~~vv~ps~ 286 (774)
...++..+||+||+|..........+. ....++|++.+-++....... ....+.. .+... ..++.+..++.
T Consensus 79 ~~~l~~~~pDiv~~~gd~~~~la~a~a-a~~~~ipv~h~~~g~~s~~~~----~~~~~~~---~r~~~~~~ad~~~~~s~ 150 (365)
T TIGR00236 79 EELLLEEKPDIVLVQGDTTTTLAGALA-AFYLQIPVGHVEAGLRTGDRY----SPMPEEI---NRQLTGHIADLHFAPTE 150 (365)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHH-HHHhCCCEEEEeCCCCcCCCC----CCCccHH---HHHHHHHHHHhccCCCH
Confidence 556777999999999765532333333 335679987654431111000 0000000 01111 12233333333
Q ss_pred c--chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccc-cccccccHHHHHHHHHHc
Q 004092 287 V--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFM-YRGLWLEHALILRALLPL 363 (774)
Q Consensus 287 ~--~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~-~~KgiKg~~lLLeA~~~L 363 (774)
. ......+++.+++.++++..+|..... ........++++++. ++.++++.+.+.. .. |+++.+++|+..+
T Consensus 151 ~~~~~l~~~G~~~~~I~vign~~~d~~~~~-~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~~---k~~~~ll~a~~~l 224 (365)
T TIGR00236 151 QAKDNLLRENVKADSIFVTGNTVIDALLTN-VEIAYSSPVLSEFGE--DKRYILLTLHRRENVG---EPLENIFKAIREI 224 (365)
T ss_pred HHHHHHHHcCCCcccEEEeCChHHHHHHHH-HhhccchhHHHhcCC--CCCEEEEecCchhhhh---hHHHHHHHHHHHH
Confidence 3 122334666778888885223431111 111113345666662 3346666664543 34 8899999999999
Q ss_pred hhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHH
Q 004092 364 FSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (774)
Q Consensus 364 ~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~ 441 (774)
.+++|+ ++++++|++.. .....+.+.++..+ +|.++|.. .++..+++.||+++.+| |..
T Consensus 225 ~~~~~~-------~~~vi~~~~~~----~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~ad~vv~~S-------g~~ 285 (365)
T TIGR00236 225 VEEFED-------VQIVYPVHLNP----VVREPLHKHLGDSK-RVHLIEPLEYLDFLNLAANSHLILTDS-------GGV 285 (365)
T ss_pred HHHCCC-------CEEEEECCCCh----HHHHHHHHHhCCCC-CEEEECCCChHHHHHHHHhCCEEEECC-------hhH
Confidence 877777 88988874322 11223444456655 79999966 57788999999999887 345
Q ss_pred HHHHHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Q 004092 442 LVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEG 520 (774)
Q Consensus 442 llEAMA~G~PVIat-d~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~ 520 (774)
++|||+||+|||++ +.++.++++.++. +++++ .|+++++++|.++++| ++.+++|+++...+.....++++++.
T Consensus 286 ~~EA~a~g~PvI~~~~~~~~~e~~~~g~-~~lv~-~d~~~i~~ai~~ll~~---~~~~~~~~~~~~~~g~~~a~~ri~~~ 360 (365)
T TIGR00236 286 QEEAPSLGKPVLVLRDTTERPETVEAGT-NKLVG-TDKENITKAAKRLLTD---PDEYKKMSNASNPYGDGEASERIVEE 360 (365)
T ss_pred HHHHHHcCCCEEECCCCCCChHHHhcCc-eEEeC-CCHHHHHHHHHHHHhC---hHHHHHhhhcCCCCcCchHHHHHHHH
Confidence 79999999999996 6788888887764 66674 6999999999999999 88888887765333333344444443
No 84
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.75 E-value=7.9e-17 Score=179.40 Aligned_cols=334 Identities=13% Similarity=0.089 Sum_probs=196.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCcc-----EEE-----------cccchhHHH
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP-----VAI-----------LQTGREKAS 209 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~-----i~~-----------l~~~~~l~~ 209 (774)
+|+++.+ ..||--.-.. +++.|++.++++.++...........-..+++ +.. +.....+.+
T Consensus 3 ki~i~~G--gt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 79 (380)
T PRK00025 3 RIAIVAG--EVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLKR 79 (380)
T ss_pred eEEEEec--CcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 5554444 3555555555 99999999999999886542211110000111 111 112223445
Q ss_pred HhhhcCccEEEEcCCch-hHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc
Q 004092 210 FVNWLNYDGILVNSLEA-KVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (774)
Q Consensus 210 ~i~~~~~DIIhvhs~~~-~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~ 288 (774)
+++..+||+||++.... ...+.... +..++|+++..|...... .... . ......++.+..++...
T Consensus 80 ~l~~~kPdivi~~~~~~~~~~~a~~a--~~~~ip~i~~~~~~~~~~-~~~~--------~---~~~~~~~d~i~~~~~~~ 145 (380)
T PRK00025 80 RLLAEPPDVFIGIDAPDFNLRLEKKL--RKAGIPTIHYVSPSVWAW-RQGR--------A---FKIAKATDHVLALFPFE 145 (380)
T ss_pred HHHHcCCCEEEEeCCCCCCHHHHHHH--HHCCCCEEEEeCCchhhc-CchH--------H---HHHHHHHhhheeCCccC
Confidence 57778999999986432 11222222 234799988766421110 0000 0 01122233333332221
Q ss_pred hhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEE-EecccccccccccHHHHHHHHHHchhhc
Q 004092 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAI-VGTQFMYRGLWLEHALILRALLPLFSEV 367 (774)
Q Consensus 289 ~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~-vGsrl~~~KgiKg~~lLLeA~~~L~~~~ 367 (774)
...+.... .++.++ |+++... ......+...+++++++++.++++. .|++....+ +.++.+++|+..+.+++
T Consensus 146 ~~~~~~~g-~~~~~~-G~p~~~~---~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~--~~~~~l~~a~~~l~~~~ 218 (380)
T PRK00025 146 AAFYDKLG-VPVTFV-GHPLADA---IPLLPDRAAARARLGLDPDARVLALLPGSRGQEIK--RLLPPFLKAAQLLQQRY 218 (380)
T ss_pred HHHHHhcC-CCeEEE-CcCHHHh---cccccChHHHHHHcCCCCCCCEEEEECCCCHHHHH--HHHHHHHHHHHHHHHhC
Confidence 11111111 124443 3444321 1111124567788999877766554 454554420 33678899999998777
Q ss_pred ccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHc-CCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHH
Q 004092 368 SVENESNSPIKVMILSGDSTSNYSVVIEAIAHNL-HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKAL 446 (774)
Q Consensus 368 p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~l-gL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAM 446 (774)
|+ ++++++||.. .+.+.+++.++++ ++. +.+.. +++..+|++||++|.+| |.+.+|||
T Consensus 219 ~~-------~~~ii~~~~~--~~~~~~~~~~~~~~~~~---v~~~~--~~~~~~~~~aDl~v~~s-------G~~~lEa~ 277 (380)
T PRK00025 219 PD-------LRFVLPLVNP--KRREQIEEALAEYAGLE---VTLLD--GQKREAMAAADAALAAS-------GTVTLELA 277 (380)
T ss_pred CC-------eEEEEecCCh--hhHHHHHHHHhhcCCCC---eEEEc--ccHHHHHHhCCEEEECc-------cHHHHHHH
Confidence 77 8999998521 1235677777765 443 44443 58999999999999987 56777999
Q ss_pred HcCCCEEEc-----------------CCcccccccccCc--cEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 004092 447 CFRKPIIAP-----------------DLSNIRKYVDDRV--NGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRR 507 (774)
Q Consensus 447 A~G~PVIat-----------------d~ggi~EiV~dg~--~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~ 507 (774)
+||+|||++ +.+++++++.++. .+++.+..|++++++++.++++| ++.+++|++++.+
T Consensus 278 a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~ 354 (380)
T PRK00025 278 LLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLAD---GARRQALLEGFTE 354 (380)
T ss_pred HhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 999999987 4556677776653 45777778999999999999999 9999999998866
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 004092 508 SVKNLMALETIEGYAMLLENV 528 (774)
Q Consensus 508 ~ak~fs~~~~a~~y~~L~e~l 528 (774)
..+.. -...+++..+++.+.
T Consensus 355 ~~~~~-~~~a~~~~~~~i~~~ 374 (380)
T PRK00025 355 LHQQL-RCGADERAAQAVLEL 374 (380)
T ss_pred HHHHh-CCCHHHHHHHHHHHH
Confidence 66544 222344444444443
No 85
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=5.5e-15 Score=156.58 Aligned_cols=176 Identities=24% Similarity=0.351 Sum_probs=152.1
Q ss_pred EEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccC
Q 004092 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA 413 (774)
Q Consensus 335 ~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~ 413 (774)
..++++| ++.+. |+++.+++|+..+....++ +.++++| ++.. .+.+...+.+++..+ +|.|+|.
T Consensus 200 ~~i~~~g-~~~~~---k~~~~~i~~~~~~~~~~~~-------~~~~~~g~~~~~---~~~~~~~~~~~~~~~-~v~~~g~ 264 (381)
T COG0438 200 FVVLYVG-RLDPE---KGLDLLIEAAAKLKKRGPD-------IKLVIVGDGPER---REELEKLAKKLGLED-NVKFLGY 264 (381)
T ss_pred eEEEEee-ccChh---cCHHHHHHHHHHhhhhcCC-------eEEEEEcCCCcc---HHHHHHHHHHhCCCC-cEEEecc
Confidence 6999999 78887 9999999999999988766 8999999 6543 245566788777766 7999998
Q ss_pred cc--cHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 414 EG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 414 ~~--dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.+ ++..+++.||++++||..| ++|++++|||++|+|||+++.++..+++.++.+|++++..+++++++++..++++
T Consensus 265 ~~~~~~~~~~~~~~~~v~ps~~e--~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 265 VPDEELAELLASADVFVLPSLSE--GFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLED 342 (381)
T ss_pred cCHHHHHHHHHhCCEEEeccccc--cchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcC
Confidence 74 7888999999999999887 8999999999999999999999999999988778888777899999999999999
Q ss_pred CCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhc
Q 004092 492 GKISPFARNIASIGRRSV-KNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 492 ~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~ll~ 530 (774)
++.++.+.+.+++.+ +.|+|+.+++.+.+++.....
T Consensus 343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 343 ---PELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 777888887666666 689999999999999987653
No 86
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.71 E-value=1.1e-15 Score=173.57 Aligned_cols=207 Identities=8% Similarity=0.018 Sum_probs=163.4
Q ss_pred EEEeCCCCCCcccccccCchh-----hHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCC
Q 004092 300 YYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (774)
Q Consensus 300 i~vIpg~gvd~~~~~~~~~~~-----k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~ 374 (774)
+.++| +|+|+..+....... ...+|++++ ++.+|+.++ |+.+. ||+...++|+..+.+++|+ -.
T Consensus 250 v~~~P-iGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VD-RLDy~---KGI~~kl~Afe~~L~~~Pe---~~ 318 (487)
T TIGR02398 250 LGAHP-VGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAE-RVDYT---KGILEKLNAYERLLERRPE---LL 318 (487)
T ss_pred EEEEE-CEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEec-ccccc---cCHHHHHHHHHHHHHhCcc---cc
Confidence 56777 688886654332211 345777777 567999999 99999 9999999999999999996 33
Q ss_pred CCeEEEEEeCCCC------CchHHHHHHHHHHc-------CCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCcc
Q 004092 375 SPIKVMILSGDST------SNYSVVIEAIAHNL-------HYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFP 439 (774)
Q Consensus 375 ~~v~LvIvGG~~~------e~Y~~~L~~la~~l-------gL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp 439 (774)
.+++|+++|.+.+ .++...+++++.+. +... .+.+.+.+ +++..+|+.|||++.+|..| |+.
T Consensus 319 gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~p-v~~~~~~v~~~el~alYr~ADV~lvT~lrD--GmN 395 (487)
T TIGR02398 319 GKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTP-LQFFTRSLPYEEVSAWFAMADVMWITPLRD--GLN 395 (487)
T ss_pred CceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCcc-EEEEcCCCCHHHHHHHHHhCCEEEECcccc--ccC
Confidence 3489999994322 23566677777664 4455 57777865 89999999999999999999 899
Q ss_pred HHHHHHHHcCC----CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHhcCH
Q 004092 440 EILVKALCFRK----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISP-FARNIASIGRRSVKNLMA 514 (774)
Q Consensus 440 ~~llEAMA~G~----PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~-~r~~m~~~ar~~ak~fs~ 514 (774)
++..|+|||+. |+|.|..+|..+.+. .+++|+|.|++++|++|.+.++. +. ++++.-+..++.+.+++.
T Consensus 396 LVa~Eyva~~~~~~GvLILSefaGaa~~l~---~AllVNP~d~~~~A~ai~~AL~m---~~~Er~~R~~~l~~~v~~~d~ 469 (487)
T TIGR02398 396 LVAKEYVAAQGLLDGVLVLSEFAGAAVELK---GALLTNPYDPVRMDETIYVALAM---PKAEQQARMREMFDAVNYYDV 469 (487)
T ss_pred cchhhHHhhhcCCCCCEEEeccccchhhcC---CCEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhhCCH
Confidence 99999999998 999999999987774 38999999999999999999998 64 344455566777788999
Q ss_pred HHHHHHHHHHHH
Q 004092 515 LETIEGYAMLLE 526 (774)
Q Consensus 515 ~~~a~~y~~L~e 526 (774)
...++.+..-++
T Consensus 470 ~~W~~~fl~~l~ 481 (487)
T TIGR02398 470 QRWADEFLAAVS 481 (487)
T ss_pred HHHHHHHHHHhh
Confidence 998888775443
No 87
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.68 E-value=3.3e-15 Score=165.01 Aligned_cols=301 Identities=11% Similarity=-0.001 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHc-CCeEEEEEcCCCc---ch--hhhh--hcCccEEE--ccc-----------chhHHHHhhhcCccEEE
Q 004092 162 QMVTIAIALREI-GYAIQVYSLEDGR---AH--EVWR--NIGVPVAI--LQT-----------GREKASFVNWLNYDGIL 220 (774)
Q Consensus 162 ~v~~Lak~L~~~-G~eV~V~t~~~~~---~~--~~~~--~~gi~i~~--l~~-----------~~~l~~~i~~~~~DIIh 220 (774)
.+.-+.+.|++. ++++.++..+..- .. ..+. ..+..+.. ... ...+...+...+||+||
T Consensus 14 ~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~ 93 (363)
T cd03786 14 KLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVL 93 (363)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 466678888876 8999977664311 10 1111 11111211 110 12234446667999999
Q ss_pred EcCCchhHHHHHHHhCCCCCCCEEEEEcCchhh--hhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc--hhhcccCC
Q 004092 221 VNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA--TRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYSAFD 296 (774)
Q Consensus 221 vhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~--~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~--~~i~~~v~ 296 (774)
+|..... .++..+..+..++|++.+.||...+ ....... .. .....++.+..++... .+...+++
T Consensus 94 ~~g~~~~-~~~~~~aa~~~~iPvv~~~~g~~s~~~~~~~~~~----r~------~~~~~ad~~~~~s~~~~~~l~~~G~~ 162 (363)
T cd03786 94 VLGDTNE-TLAAALAAFKLGIPVAHVEAGLRSFDRGMPDEEN----RH------AIDKLSDLHFAPTEEARRNLLQEGEP 162 (363)
T ss_pred EeCCchH-HHHHHHHHHHcCCCEEEEecccccCCCCCCchHH----HH------HHHHHhhhccCCCHHHHHHHHHcCCC
Confidence 9975542 3333333335689998766652111 0000000 00 0112333333333331 22344667
Q ss_pred CCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCC
Q 004092 297 AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSP 376 (774)
Q Consensus 297 ~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~ 376 (774)
..++.++++..+|...+.. ........++.++++++.++++++| +.......|+++.+++|+..+... +
T Consensus 163 ~~kI~vign~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~vlv~~~-r~~~~~~~k~~~~l~~al~~l~~~--~------- 231 (363)
T cd03786 163 PERIFVVGNTMIDALLRLL-ELAKKELILELLGLLPKKYILVTLH-RVENVDDGEQLEEILEALAELAEE--D------- 231 (363)
T ss_pred cccEEEECchHHHHHHHHH-HhhccchhhhhcccCCCCEEEEEeC-CccccCChHHHHHHHHHHHHHHhc--C-------
Confidence 7888888853344321110 0111122345677777666666666 554311228999999999988643 3
Q ss_pred eEEEEEe-CCCCCchHHHHHHHHHHcCC-CCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCE
Q 004092 377 IKVMILS-GDSTSNYSVVIEAIAHNLHY-PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPI 452 (774)
Q Consensus 377 v~LvIvG-G~~~e~Y~~~L~~la~~lgL-~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PV 452 (774)
+.+++.| ++.. +.+++.+.++++ .+ +|.|+|.. +++..+|++||++|.|| | + +..|||++|+||
T Consensus 232 ~~vi~~~~~~~~----~~l~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~ad~~v~~S-----g-g-i~~Ea~~~g~Pv 299 (363)
T cd03786 232 VPVVFPNHPRTR----PRIREAGLEFLGHHP-NVLLISPLGYLYFLLLLKNADLVLTDS-----G-G-IQEEASFLGVPV 299 (363)
T ss_pred CEEEEECCCChH----HHHHHHHHhhccCCC-CEEEECCcCHHHHHHHHHcCcEEEEcC-----c-c-HHhhhhhcCCCE
Confidence 6766666 4444 667788887776 44 79999754 78999999999999998 3 3 578999999999
Q ss_pred EEcCC-cccccccccCccEEEEcC-CCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 004092 453 IAPDL-SNIRKYVDDRVNGYLFPK-ENIKALTHIILQVITNGKISPFARNIA 502 (774)
Q Consensus 453 Iatd~-ggi~EiV~dg~~G~Lv~~-~d~e~La~aI~~Ll~d~~~~~~r~~m~ 502 (774)
|+++. +..++.+.+| ..+.. .|+++++++|.+++++ +..+..|.
T Consensus 300 I~~~~~~~~~~~~~~g---~~~~~~~~~~~i~~~i~~ll~~---~~~~~~~~ 345 (363)
T cd03786 300 LNLRDRTERPETVESG---TNVLVGTDPEAILAAIEKLLSD---EFAYSLMS 345 (363)
T ss_pred EeeCCCCccchhhhee---eEEecCCCHHHHHHHHHHHhcC---chhhhcCC
Confidence 99864 4456666654 33333 3799999999999999 77776663
No 88
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.66 E-value=4.9e-14 Score=147.57 Aligned_cols=195 Identities=17% Similarity=0.209 Sum_probs=158.1
Q ss_pred HHHhCC-CCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe---CCCCCchHHHHHHHHHH
Q 004092 325 RVKMGF-KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS---GDSTSNYSVVIEAIAHN 400 (774)
Q Consensus 325 R~~lgl-~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG---G~~~e~Y~~~L~~la~~ 400 (774)
....+. ..+.+.++++| .+.|+ |++. +++.++....+.|+ ....++++|+|+| +++.+++-..|++++++
T Consensus 259 ks~~~te~~r~~~ll~l~-Q~RPE---KnH~-~Lql~Al~~~~~pl-~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~ 332 (465)
T KOG1387|consen 259 KSKFGTEGERENQLLSLA-QFRPE---KNHK-ILQLFALYLKNEPL-EASVSPIKLIIVGSCRNEEDEERVKSLKDLAEE 332 (465)
T ss_pred HHHhcccCCcceEEEEEe-ecCcc---cccH-HHHHHHHHHhcCch-hhccCCceEEEEeccCChhhHHHHHHHHHHHHh
Confidence 334444 45667899999 99999 8888 56665555555554 2344569999999 45666777889999999
Q ss_pred cCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc-ccccc---CccEEEEc
Q 004092 401 LHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDD---RVNGYLFP 474 (774)
Q Consensus 401 lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~-EiV~d---g~~G~Lv~ 474 (774)
|++++ +|.|.-.+ +++..+|+.|.+-|..-..| -||+.++|+||+|+-.|+.+.||.. ++|.+ ..+|++.+
T Consensus 333 L~i~~-~v~F~~N~Py~~lv~lL~~a~iGvh~MwNE--HFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~ 409 (465)
T KOG1387|consen 333 LKIPK-HVQFEKNVPYEKLVELLGKATIGVHTMWNE--HFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP 409 (465)
T ss_pred cCCcc-ceEEEecCCHHHHHHHhccceeehhhhhhh--hcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC
Confidence 99999 89998755 89999999999999998888 6999999999999999998888875 66642 35799885
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC
Q 004092 475 KENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLP 532 (774)
Q Consensus 475 ~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~~~ 532 (774)
+.++.|++|.+++..+ .+.+..|+++||..+.+|+-.+..+.|...+.+++..+
T Consensus 410 --t~~EYaE~iLkIv~~~--~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 410 --TDEEYAEAILKIVKLN--YDERNMMRRNARKSLARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred --ChHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhccc
Confidence 7889999999999851 45577899999999999999999999999999887654
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.64 E-value=6.9e-14 Score=153.61 Aligned_cols=286 Identities=11% Similarity=0.049 Sum_probs=180.0
Q ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCc-cEEEEcCCchhHH-H-H
Q 004092 155 LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNY-DGILVNSLEAKVV-I-S 231 (774)
Q Consensus 155 ~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~-DIIhvhs~~~~~~-l-~ 231 (774)
...|+...-.+..+.+.+.|++...+...+.... .+. .....+...+...++ |+||+++|..... + .
T Consensus 13 ~~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~Dvv~~~~P~~~~~~~~~ 82 (333)
T PRK09814 13 GNSAALKAKNDVTKIAKQLGFEELGIYFYNIKRD-SLS---------ERSKRLDGILASLKPGDIVIFQFPTWNGFEFDR 82 (333)
T ss_pred ccchHHHHHHHHHHHHHHCCCeEeEEEecccccc-hHH---------HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHH
Confidence 3567788888999999999998766543221100 000 001122334555666 9999999876431 1 2
Q ss_pred HHHhC-CCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch--hhcccCCCCCEEEeCCCCC
Q 004092 232 NIMQE-PFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP--MMYSAFDAGNYYVIPGSPA 308 (774)
Q Consensus 232 ~Ll~~-~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~--~i~~~v~~~ki~vIpg~gv 308 (774)
.++.. +..++|+|+++|+.... +.. .. ..........++.++.+++++.... +...++...++.++++..
T Consensus 83 ~~~~~~k~~~~k~i~~ihD~~~~-~~~---~~--~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~~~- 155 (333)
T PRK09814 83 LFVDKLKKKQVKIIILIHDIEPL-RFD---SN--YYLMKEEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGIFD- 155 (333)
T ss_pred HHHHHHHHcCCEEEEEECCcHHH-hcc---cc--chhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEeccccc-
Confidence 22211 12379999999973211 111 00 0012233456778898888877632 223445556676665211
Q ss_pred CcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCC
Q 004092 309 KAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDST 387 (774)
Q Consensus 309 d~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~ 387 (774)
.. ..... + ......+.++|+| ++... .. ++. ..++ ++|+|+| |+..
T Consensus 156 ~~---~~~~~------~---~~~~~~~~i~yaG-~l~k~---~~----l~~------~~~~-------~~l~i~G~g~~~ 202 (333)
T PRK09814 156 YL---NDIEL------V---KTPSFQKKINFAG-NLEKS---PF----LKN------WSQG-------IKLTVFGPNPED 202 (333)
T ss_pred cc---ccccc------c---ccccCCceEEEec-Chhhc---hH----HHh------cCCC-------CeEEEECCCccc
Confidence 11 00000 0 0122345899999 77653 21 111 2344 8999999 8754
Q ss_pred CchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCcc-------C--cCCccHHHHHHHHcCCCEEEcC
Q 004092 388 SNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL-------E--EQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 388 e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~-------E--~qGfp~~llEAMA~G~PVIatd 456 (774)
+ ...+ +|.|+|++ +++..+|+. |+.+.+... + .-++|.++.++||||+|||+++
T Consensus 203 ~-------------~~~~-~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~ 267 (333)
T PRK09814 203 L-------------ENSA-NISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS 267 (333)
T ss_pred c-------------ccCC-CeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC
Confidence 1 2344 79999977 888999988 655443211 1 0158999999999999999999
Q ss_pred CcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc
Q 004092 457 LSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNL 512 (774)
Q Consensus 457 ~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~f 512 (774)
.+++.++|.++.+|++++ +.++++++|..+ + ++.+++|++++++.++.+
T Consensus 268 ~~~~~~~V~~~~~G~~v~--~~~el~~~l~~~--~---~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 268 KAAIADFIVENGLGFVVD--SLEELPEIIDNI--T---EEEYQEMVENVKKISKLL 316 (333)
T ss_pred CccHHHHHHhCCceEEeC--CHHHHHHHHHhc--C---HHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 788999999885 3 457888999999998654
No 90
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.60 E-value=4e-14 Score=170.32 Aligned_cols=287 Identities=11% Similarity=0.113 Sum_probs=190.0
Q ss_pred CccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc--
Q 004092 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-- 288 (774)
Q Consensus 215 ~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~-- 288 (774)
.=|+|.+|.... ..+..++.+.....++-+.+|-. .++..+.. ...++. ..-.++.+.|.....
T Consensus 231 ~gD~VWVHDYHL-~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~-----r~elL~----glL~aDlIGFqT~~y~r 300 (934)
T PLN03064 231 EGDVVWCHDYHL-MFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPS-----RSELLR----SVLAADLVGFHTYDYAR 300 (934)
T ss_pred CCCEEEEecchh-hHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCc-----HHHHHH----HHhcCCeEEeCCHHHHH
Confidence 348999999888 47777777777788999999961 11111100 011110 111222233322220
Q ss_pred ------------hhhcccCC-CC---CEEEeCCCCCCcccccccCchh-----hHHHHHHhCCCCCCEEEEEEecccccc
Q 004092 289 ------------PMMYSAFD-AG---NYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYR 347 (774)
Q Consensus 289 ------------~~i~~~v~-~~---ki~vIpg~gvd~~~~~~~~~~~-----k~~lR~~lgl~~~~~vIl~vGsrl~~~ 347 (774)
......+. .+ ++.+.| +|||...+....... .+.++++++ ++.+|+.++ |+.+.
T Consensus 301 hFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~P-iGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVD-RLD~~ 375 (934)
T PLN03064 301 HFVSACTRILGLEGTPEGVEDQGRLTRVAAFP-IGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVD-RLDMI 375 (934)
T ss_pred HHHHHHHHHhCccccCCeEEECCEEEEEEEEe-CEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEee-ccccc
Confidence 00000111 12 244556 788876554332211 335666655 456999999 99998
Q ss_pred cccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-C-----CCCCchHHHHHHHHHHcCCCC-----ccEEEcc---C
Q 004092 348 GLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-G-----DSTSNYSVVIEAIAHNLHYPL-----GVVKHMA---A 413 (774)
Q Consensus 348 KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G-----~~~e~Y~~~L~~la~~lgL~~-----~~V~flG---~ 413 (774)
||+...++|+..+.+++|+ -..++.|+-+. + +...++...+.+++.+.+-.- .-|.++. .
T Consensus 376 ---KGI~~kL~AfE~fL~~~Pe---~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~ 449 (934)
T PLN03064 376 ---KGIPQKILAFEKFLEENPE---WRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLD 449 (934)
T ss_pred ---cCHHHHHHHHHHHHHhCcc---ccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCC
Confidence 9999999999999999887 11224555444 2 122223344555554432111 1145443 2
Q ss_pred cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC----CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 414 EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 414 ~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~----PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
.+++..+|+.||++|+||..| |++++..|||+|+. ++|.|...|..+.+ +..+++|+|.|++++|++|.+++
T Consensus 450 ~eeL~AlY~~ADV~lvTslrD--GmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL 525 (934)
T PLN03064 450 FHALCALYAVTDVALVTSLRD--GMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVAASIAQAL 525 (934)
T ss_pred HHHHHHHHHhCCEEEeCcccc--ccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCCHHHHHHHHHHHH
Confidence 288999999999999999999 99999999999954 45558999988888 33589999999999999999999
Q ss_pred H-cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 004092 490 T-NGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (774)
Q Consensus 490 ~-d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll 529 (774)
+ + +++++++.+++++++..+++...++.+.+-++.+.
T Consensus 526 ~M~---~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 526 NMP---EEEREKRHRHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred hCC---HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 9 6 67788888999999999999999999888777653
No 91
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.5e-13 Score=138.94 Aligned_cols=343 Identities=14% Similarity=0.128 Sum_probs=206.0
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cchhhhhhcCccEEEcccchh--------------H-
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGRE--------------K- 207 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~-~~~~~~~~~gi~i~~l~~~~~--------------l- 207 (774)
+.-+++|.++...+ -.|-.-|..|++.|++|+++...+. +.......-.|.++.++.... +
T Consensus 13 ~ra~vvVLGDvGRS---PRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lKvf~ 89 (444)
T KOG2941|consen 13 KRAIVVVLGDVGRS---PRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLKVFW 89 (444)
T ss_pred ceEEEEEecccCCC---hHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCcccCCCchhhhhHHHHHH
Confidence 34467777765443 3566678889999999999988664 444455555555554432210 0
Q ss_pred ------HHHhhhcCccEEEEcCCchhHHHH-HHHhCCCCCCCEEEEEcCch-----------------hhhhHHHhhhhh
Q 004092 208 ------ASFVNWLNYDGILVNSLEAKVVIS-NIMQEPFKSLPLVWTIHEGT-----------------LATRARNYASSG 263 (774)
Q Consensus 208 ------~~~i~~~~~DIIhvhs~~~~~~l~-~Ll~~~~~~ipvI~tiHg~~-----------------l~~~~~k~~~~~ 263 (774)
..+.-...+|+|.++.|.+.+.+. +.+.....+.++|..+|+.. +.+.++++..+.
T Consensus 90 Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~ 169 (444)
T KOG2941|consen 90 QFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKL 169 (444)
T ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcc
Confidence 001112789999999987644333 23333467899999999711 113344444444
Q ss_pred hhHHHHHHHHHHH-hccE-------EEc--cCCc-c-----hhhcccCCCCCEEEeCCCCCCcccccccCchh----hHH
Q 004092 264 QLELLNDWKKVFN-RATV-------VVF--PDYV-L-----PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY----NDT 323 (774)
Q Consensus 264 ~~~li~~~~~~~~-~a~~-------vv~--ps~~-~-----~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~----k~~ 323 (774)
++.-++..+.+.. ..+. +.+ |.+. . +..+..+.. |...|..-.... ...
T Consensus 170 a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~-----------d~~~f~ar~~q~~~~~~ta 238 (444)
T KOG2941|consen 170 ADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAG-----------DHSPFRAREPQDKALERTA 238 (444)
T ss_pred cccchhhHHHHHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhcc-----------ccchhhhcccccchhhhhh
Confidence 4332222222111 1110 001 1100 0 000001000 000000000000 011
Q ss_pred HHHHhC-----CCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHH
Q 004092 324 VRVKMG-----FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAI 397 (774)
Q Consensus 324 lR~~lg-----l~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~l 397 (774)
+-++.. ..++.+.++.......++ .++..|++|+....++..+....-+++-++|.| ||..+.|. +.
T Consensus 239 f~~k~~s~~v~~~~~~pallvsSTswTpD---Edf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~----~~ 311 (444)
T KOG2941|consen 239 FTKKDASGDVQLLPERPALLVSSTSWTPD---EDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYS----QE 311 (444)
T ss_pred HhhhcccchhhhccCCCeEEEecCCCCCc---ccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHH----HH
Confidence 111111 122333444444478888 999999999985433221111222338888889 99995555 88
Q ss_pred HHHcCCCCccEEEc-cC--cccHHHHHHHcCEEEEc--CccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEE
Q 004092 398 AHNLHYPLGVVKHM-AA--EGDVDSVLNTADVVIYG--SFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYL 472 (774)
Q Consensus 398 a~~lgL~~~~V~fl-G~--~~dl~~~l~aaDI~V~P--S~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~L 472 (774)
++++++++ |.+. .+ .+|.+.+++.||+.|.- |..- --.|++++..+.||+||+|-+...+.|+|.+++||++
T Consensus 312 I~~~~~~~--v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSG-LDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlv 388 (444)
T KOG2941|consen 312 IHEKNLQH--VQVCTPWLEAEDYPKLLASADLGVCLHTSSSG-LDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLV 388 (444)
T ss_pred HHHhcccc--eeeeecccccccchhHhhccccceEeeecCcc-cCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceE
Confidence 88888887 4444 33 38999999999987653 3221 1489999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHHhcCHHH
Q 004092 473 FPKENIKALTHIILQVIT----NGKISPFARNIASIGRRSVKNLMALE 516 (774)
Q Consensus 473 v~~~d~e~La~aI~~Ll~----d~~~~~~r~~m~~~ar~~ak~fs~~~ 516 (774)
|. |.++||+.+..+++ + .....++.+++++.. +..|+.
T Consensus 389 F~--Ds~eLa~ql~~lf~~fp~~---a~~l~~lkkn~~e~~-e~RW~~ 430 (444)
T KOG2941|consen 389 FE--DSEELAEQLQMLFKNFPDN---ADELNQLKKNLREEQ-ELRWDE 430 (444)
T ss_pred ec--cHHHHHHHHHHHHhcCCCC---HHHHHHHHHhhHHHH-hhhHHH
Confidence 97 89999999999998 6 677888888888774 344443
No 92
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.58 E-value=4.3e-15 Score=140.49 Aligned_cols=131 Identities=23% Similarity=0.325 Sum_probs=95.4
Q ss_pred EEEEEEecccccccccccHHHHHH-HHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 335 LVIAIVGTQFMYRGLWLEHALILR-ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 335 ~vIl~vGsrl~~~KgiKg~~lLLe-A~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
++++++| +..+. |+++.+++ |+.++.+++|+ ++|+|+| ++. .++++ ..+ +|.++|
T Consensus 3 ~~i~~~g-~~~~~---k~~~~li~~~~~~l~~~~p~-------~~l~i~G~~~~------~l~~~-----~~~-~v~~~g 59 (135)
T PF13692_consen 3 LYIGYLG-RIRPD---KGLEELIEAALERLKEKHPD-------IELIIIGNGPD------ELKRL-----RRP-NVRFHG 59 (135)
T ss_dssp EEEE--S--SSGG---GTHHHHHH-HHHHHHHHSTT-------EEEEEECESS-------HHCCH-----HHC-TEEEE-
T ss_pred ccccccc-ccccc---ccccchhhhHHHHHHHHCcC-------EEEEEEeCCHH------HHHHh-----cCC-CEEEcC
Confidence 5778888 66666 99999999 99999999998 9999999 554 13333 123 799999
Q ss_pred CcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 413 ~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+++++.++++.||+++.|+...+ ++|.+++|||++|+|||+++. +..+++.....|+++ .+|+++++++|.++++|
T Consensus 60 ~~~e~~~~l~~~dv~l~p~~~~~-~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 60 FVEELPEILAAADVGLIPSRFNE-GFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp S-HHHHHHHHC-SEEEE-BSS-S-CC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHhCCEEEEEeeCCC-cCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 99999999999999999996443 899999999999999999998 566666545567777 78999999999999876
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.55 E-value=7.6e-14 Score=160.98 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=146.8
Q ss_pred EEEEEe-cccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCC---------
Q 004092 336 VIAIVG-TQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYP--------- 404 (774)
Q Consensus 336 vIl~vG-srl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~--------- 404 (774)
.+++++ -|+ ++ |.++.+|+|+..+.+++|+ ++|.+.| |.. +.+...++++++++++.
T Consensus 321 ~~I~v~idrL-~e---k~~~~~I~av~~~~~~~p~-------~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~ 388 (519)
T TIGR03713 321 TEIGFWIDGL-SD---EELQQILQQLLQYILKNPD-------YELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFS 388 (519)
T ss_pred eEEEEEcCCC-Ch---HHHHHHHHHHHHHHhhCCC-------eEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccc
Confidence 344444 145 66 9999999999999999999 9999999 743 45567888888888777
Q ss_pred --------------------CccEEEccCcc--cHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccc
Q 004092 405 --------------------LGVVKHMAAEG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK 462 (774)
Q Consensus 405 --------------------~~~V~flG~~~--dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~E 462 (774)
+ +|.|.|+.. ++.+.|..+.++|.+|..| ||+ +++||+++|+|+| .-|..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~-~v~f~gy~~e~dl~~~~~~arl~id~s~~e--g~~-~~ieAiS~GiPqI---nyg~~~ 461 (519)
T TIGR03713 389 LSEQDENQPILQTDEEQKEKE-RIAFTTLTNEEDLISALDKLRLIIDLSKEP--DLY-TQISGISAGIPQI---NKVETD 461 (519)
T ss_pred cchhhhhhhcccchhhccccc-EEEEEecCCHHHHHHHHhhheEEEECCCCC--ChH-HHHHHHHcCCCee---ecCCce
Confidence 6 899999886 9999999999999999998 899 9999999999999 445689
Q ss_pred ccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004092 463 YVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLL 525 (774)
Q Consensus 463 iV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~ 525 (774)
+|.|++||+++ +|.++|+++|..+|.+ ++.++++...+++.+++||.+++.++|.+++
T Consensus 462 ~V~d~~NG~li--~d~~~l~~al~~~L~~---~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 462 YVEHNKNGYII--DDISELLKALDYYLDN---LKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred eeEcCCCcEEe--CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 99999999999 6999999999999999 9999999999999999999999999998763
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.55 E-value=7.4e-13 Score=148.32 Aligned_cols=320 Identities=13% Similarity=0.073 Sum_probs=183.3
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-----hhhcCccEEE----cc-------cchhH
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-----WRNIGVPVAI----LQ-------TGREK 207 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~-----~~~~gi~i~~----l~-------~~~~l 207 (774)
-|+|.++.+ ..||--.-. .++++|++.++++.++....+..... +....+++.. +. ...+.
T Consensus 5 ~~ki~i~aG--gtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 5 IPTIALVAG--EASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CCeEEEEeC--CccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 356655544 355554445 99999999999999888664221110 0000011111 11 11233
Q ss_pred HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhH----HHhhhhhhhHHHHHHHHHHHhccEEEc
Q 004092 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA----RNYASSGQLELLNDWKKVFNRATVVVF 283 (774)
Q Consensus 208 ~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~----~k~~~~~~~~li~~~~~~~~~a~~vv~ 283 (774)
.+.++..+||+|++............. .+..++|+++.+. +..+.. .+...+..+.+++.+..
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~a-a~~~gip~v~~i~--P~~waw~~~~~r~l~~~~d~v~~~~~~---------- 148 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELK-KKDPGIKIIYYIS--PQVWAWRKWRAKKIEKATDFLLAILPF---------- 148 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHH-HhhCCCCEEEEeC--CcHhhcCcchHHHHHHHHhHhhccCCC----------
Confidence 445677899999998854322222223 3456899986553 221111 12222233333222211
Q ss_pred cCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEE-eccccc-ccccccHHHHHHHHH
Q 004092 284 PDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIV-GTQFMY-RGLWLEHALILRALL 361 (774)
Q Consensus 284 ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~v-Gsrl~~-~KgiKg~~lLLeA~~ 361 (774)
. ...+... ..+..++. +|+.... ... ...+...|++++++++.++|+++ |||..+ + |++..+++|+.
T Consensus 149 --e--~~~~~~~-g~~~~~vG-nPv~~~~-~~~-~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~---k~~~~ll~a~~ 217 (385)
T TIGR00215 149 --E--KAFYQKK-NVPCRFVG-HPLLDAI-PLY-KPDRKSAREKLGIDHNGETLALLPGSRGSEVE---KLFPLFLKAAQ 217 (385)
T ss_pred --c--HHHHHhc-CCCEEEEC-Cchhhhc-ccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHH---HhHHHHHHHHH
Confidence 0 0001110 12333433 3542211 111 12245568889998887777655 567766 6 88999999999
Q ss_pred HchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHH
Q 004092 362 PLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEI 441 (774)
Q Consensus 362 ~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~ 441 (774)
.+.+.+|+ +++++.+++.. ..+.++++.+.++... .|.+++. ++..+|++||++|++| |.+
T Consensus 218 ~l~~~~p~-------~~~vi~~~~~~--~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~l~aADl~V~~S-------Gt~ 278 (385)
T TIGR00215 218 LLEQQEPD-------LRRVLPVVNFK--RRLQFEQIKAEYGPDL-QLHLIDG--DARKAMFAADAALLAS-------GTA 278 (385)
T ss_pred HHHHhCCC-------eEEEEEeCCch--hHHHHHHHHHHhCCCC-cEEEECc--hHHHHHHhCCEEeecC-------CHH
Confidence 99888887 88887763221 1255667777666655 6766643 6778999999999999 345
Q ss_pred HHHHHHcCCCEEEc----CCc-------------ccccccccCccEE--EEcCCCHHHHHHHHHHHHHcCCCc----HHH
Q 004092 442 LVKALCFRKPIIAP----DLS-------------NIRKYVDDRVNGY--LFPKENIKALTHIILQVITNGKIS----PFA 498 (774)
Q Consensus 442 llEAMA~G~PVIat----d~g-------------gi~EiV~dg~~G~--Lv~~~d~e~La~aI~~Ll~d~~~~----~~r 498 (774)
.+|||+||+|+|.. ..+ +.+.++.+..-.. +-..-+++.+++++.++++| + +.+
T Consensus 279 tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~---~~~~~~~~ 355 (385)
T TIGR00215 279 ALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLEN---GLKAYKEM 355 (385)
T ss_pred HHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcC---CcccHHHH
Confidence 56999999998886 221 1222333322111 11234689999999999999 8 778
Q ss_pred HHHHHHHHHHHHhc
Q 004092 499 RNIASIGRRSVKNL 512 (774)
Q Consensus 499 ~~m~~~ar~~ak~f 512 (774)
+++.+.-.+..+..
T Consensus 356 ~~~~~~~~~~~~~l 369 (385)
T TIGR00215 356 HRERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHHHHHh
Confidence 77766655554444
No 95
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=2.6e-11 Score=133.59 Aligned_cols=318 Identities=16% Similarity=0.189 Sum_probs=186.3
Q ss_pred EecCCCCChHHHHHHHHHHHHHHcCCe-EEEEEcCCCcchhhhhhcCccEEEccc---------------------chhH
Q 004092 150 VFPDLLIDPQQLQMVTIAIALREIGYA-IQVYSLEDGRAHEVWRNIGVPVAILQT---------------------GREK 207 (774)
Q Consensus 150 V~~~L~~GG~e~~v~~Lak~L~~~G~e-V~V~t~~~~~~~~~~~~~gi~i~~l~~---------------------~~~l 207 (774)
++.....||--.....+++.|.++|++ |.++....+-........++.++.++. ..+.
T Consensus 4 vl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~a 83 (357)
T COG0707 4 VLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQA 83 (357)
T ss_pred EEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHHHH
Confidence 334445788888899999999999996 555433332222222222333333221 1223
Q ss_pred HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc
Q 004092 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (774)
Q Consensus 208 ~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~ 287 (774)
..+++..+||+|+....... ....+. ....++|++.+-.+.. .....++..+..+.+...+..
T Consensus 84 ~~il~~~kPd~vig~Ggyvs-~P~~~A-a~~~~iPv~ihEqn~~-~G~ank~~~~~a~~V~~~f~~-------------- 146 (357)
T COG0707 84 RKILKKLKPDVVIGTGGYVS-GPVGIA-AKLLGIPVIIHEQNAV-PGLANKILSKFAKKVASAFPK-------------- 146 (357)
T ss_pred HHHHHHcCCCEEEecCCccc-cHHHHH-HHhCCCCEEEEecCCC-cchhHHHhHHhhceeeecccc--------------
Confidence 44577799999999776652 333333 3466799885444211 111122222222222111110
Q ss_pred chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhc
Q 004092 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (774)
Q Consensus 288 ~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~ 367 (774)
....++.+++ +..|+|+.....+ ......+.. + ..+.++|+++||...-. .-.+.+.++...+.+
T Consensus 147 ---~~~~~~~~~~-~~tG~Pvr~~~~~----~~~~~~~~~-~-~~~~~~ilV~GGS~Ga~---~ln~~v~~~~~~l~~-- 211 (357)
T COG0707 147 ---LEAGVKPENV-VVTGIPVRPEFEE----LPAAEVRKD-G-RLDKKTILVTGGSQGAK---ALNDLVPEALAKLAN-- 211 (357)
T ss_pred ---ccccCCCCce-EEecCcccHHhhc----cchhhhhhh-c-cCCCcEEEEECCcchhH---HHHHHHHHHHHHhhh--
Confidence 1122233333 3345677652222 111122222 2 22677888888776664 433444444445544
Q ss_pred ccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHH
Q 004092 368 SVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (774)
Q Consensus 368 p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA 447 (774)
+ ++++..+|+.. + +.++..-.+++. +...++.+|+..+|++||++|.=+ -++++.|+.+
T Consensus 212 -~-------~~v~~~~G~~~--~-~~~~~~~~~~~~----~~v~~f~~dm~~~~~~ADLvIsRa------Ga~Ti~E~~a 270 (357)
T COG0707 212 -R-------IQVIHQTGKND--L-EELKSAYNELGV----VRVLPFIDDMAALLAAADLVISRA------GALTIAELLA 270 (357)
T ss_pred -C-------eEEEEEcCcch--H-HHHHHHHhhcCc----EEEeeHHhhHHHHHHhccEEEeCC------cccHHHHHHH
Confidence 2 77777776542 1 223333332222 888899999999999999999765 2689999999
Q ss_pred cCCCEEEcCCccc--------ccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHH
Q 004092 448 FRKPIIAPDLSNI--------RKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALET 517 (774)
Q Consensus 448 ~G~PVIatd~ggi--------~EiV~dg~~G~Lv~~~d--~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~ 517 (774)
+|+|+|--+.+.. ...+++...|.+++..+ ++.+++.|..++++ ++..++|++++++....-..+++
T Consensus 271 ~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~---~~~l~~m~~~a~~~~~p~aa~~i 347 (357)
T COG0707 271 LGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSN---PEKLKAMAENAKKLGKPDAAERI 347 (357)
T ss_pred hCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999988665544 23344445577777655 89999999999999 99999999999887765555555
Q ss_pred HHHHHH
Q 004092 518 IEGYAM 523 (774)
Q Consensus 518 a~~y~~ 523 (774)
++....
T Consensus 348 ~~~~~~ 353 (357)
T COG0707 348 ADLLLA 353 (357)
T ss_pred HHHHHH
Confidence 554443
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.35 E-value=1.7e-10 Score=127.77 Aligned_cols=293 Identities=16% Similarity=0.169 Sum_probs=170.7
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEccc---ch------------------hH
Q 004092 149 LVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT---GR------------------EK 207 (774)
Q Consensus 149 lV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~---~~------------------~l 207 (774)
+++.....||--.-...+++.|.+.||+|.+++...+-........++++..+.. .+ +.
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDA 83 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 4445556888888899999999999999999987654433333334455433321 11 12
Q ss_pred HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc
Q 004092 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (774)
Q Consensus 208 ~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~ 287 (774)
.++++..+||+||.+..... ....+.+ +..++|+++.-.+ .......+...++.+.++ ..|+.
T Consensus 84 ~~i~~~~kPdvvi~~Ggy~s-~p~~~aa-~~~~~p~~i~e~n-~~~g~~nr~~~~~a~~v~------------~~f~~-- 146 (352)
T PRK12446 84 YVRIRKLKPDVIFSKGGFVS-VPVVIGG-WLNRVPVLLHESD-MTPGLANKIALRFASKIF------------VTFEE-- 146 (352)
T ss_pred HHHHHhcCCCEEEecCchhh-HHHHHHH-HHcCCCEEEECCC-CCccHHHHHHHHhhCEEE------------EEccc--
Confidence 23467799999999776652 3333333 3667898643221 111111222222222111 11211
Q ss_pred chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccH-HHHHHHHHHchhh
Q 004092 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEH-ALILRALLPLFSE 366 (774)
Q Consensus 288 ~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~-~lLLeA~~~L~~~ 366 (774)
....++.+++. +.|+|+... . ....+...++.+++++++++|+.+|+.... +.+ +.+.+++..+..
T Consensus 147 ---~~~~~~~~k~~-~tG~Pvr~~---~-~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga----~~in~~~~~~l~~l~~- 213 (352)
T PRK12446 147 ---AAKHLPKEKVI-YTGSPVREE---V-LKGNREKGLAFLGFSRKKPVITIMGGSLGA----KKINETVREALPELLL- 213 (352)
T ss_pred ---hhhhCCCCCeE-EECCcCCcc---c-ccccchHHHHhcCCCCCCcEEEEECCccch----HHHHHHHHHHHHhhcc-
Confidence 11223334544 335677652 1 112244556778888888889888876665 444 333444444432
Q ss_pred cccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc-ccHHHHHHHcCEEEEcCccCcCCccHHHHHH
Q 004092 367 VSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKA 445 (774)
Q Consensus 367 ~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~-~dl~~~l~aaDI~V~PS~~E~qGfp~~llEA 445 (774)
+ ++++++.|... +.+.+ .. .. ++...++. +++.++|++||++|.-+ -+.++.|+
T Consensus 214 --~-------~~vv~~~G~~~--~~~~~----~~--~~--~~~~~~f~~~~m~~~~~~adlvIsr~------G~~t~~E~ 268 (352)
T PRK12446 214 --K-------YQIVHLCGKGN--LDDSL----QN--KE--GYRQFEYVHGELPDILAITDFVISRA------GSNAIFEF 268 (352)
T ss_pred --C-------cEEEEEeCCch--HHHHH----hh--cC--CcEEecchhhhHHHHHHhCCEEEECC------ChhHHHHH
Confidence 2 56666555431 22212 21 12 34556887 78999999999998654 37799999
Q ss_pred HHcCCCEEEcCCcc-c--------ccccccCccEEEEcC--CCHHHHHHHHHHHHHcCCCcHHHH
Q 004092 446 LCFRKPIIAPDLSN-I--------RKYVDDRVNGYLFPK--ENIKALTHIILQVITNGKISPFAR 499 (774)
Q Consensus 446 MA~G~PVIatd~gg-i--------~EiV~dg~~G~Lv~~--~d~e~La~aI~~Ll~d~~~~~~r~ 499 (774)
+++|+|.|..+... . .+.+.+...|..+.. -+++.+++++..+++| ++.++
T Consensus 269 ~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~---~~~~~ 330 (352)
T PRK12446 269 LTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHN---NEKYK 330 (352)
T ss_pred HHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcC---HHHHH
Confidence 99999999876531 1 123444444655543 3588999999999988 65543
No 97
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.27 E-value=2.2e-10 Score=134.20 Aligned_cols=183 Identities=14% Similarity=0.110 Sum_probs=139.1
Q ss_pred CCCCCEEEEEEecccccccccccHHHHHHHHHHchh--hcccCCCCCCCeEEEEEe-CCCC----CchHHHHHHHHHHcC
Q 004092 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS--EVSVENESNSPIKVMILS-GDST----SNYSVVIEAIAHNLH 402 (774)
Q Consensus 330 l~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~--~~p~~~~~~~~v~LvIvG-G~~~----e~Y~~~L~~la~~lg 402 (774)
++++.+++++++ |+... |+++++++++..+.+ +.|. .+++++++| |... .+|...+.+++++..
T Consensus 385 ~dpd~~~ig~v~-Rl~~y---Kr~dLil~~i~~l~~i~~~~~-----~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~ 455 (601)
T TIGR02094 385 LDPDVLTIGFAR-RFATY---KRADLIFRDLERLARILNNPE-----RPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPE 455 (601)
T ss_pred cCCCCcEEEEEE-cchhh---hhHHHHHHHHHHHHHHhhCCC-----CCeEEEEEEecCcccchHHHHHHHHHHHHhccc
Confidence 456777888888 88887 999999999988874 2221 348999999 7544 245566667777544
Q ss_pred CCCccEEEc-cCcccH-HHHHHHcCEEEE-cCc-cCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcC---
Q 004092 403 YPLGVVKHM-AAEGDV-DSVLNTADVVIY-GSF-LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK--- 475 (774)
Q Consensus 403 L~~~~V~fl-G~~~dl-~~~l~aaDI~V~-PS~-~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~--- 475 (774)
.++ +|.|+ ++...+ ..+++.||++++ ||. .| ..|++=+-||..|.+.+++--|...|.. ++.||+.+.+
T Consensus 456 ~~~-kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~E--acGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~ 531 (601)
T TIGR02094 456 FRG-RIVFLENYDINLARYLVSGVDVWLNNPRRPLE--ASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEE 531 (601)
T ss_pred CCC-CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcC--CchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCcc
Confidence 666 66665 566444 568999999999 998 88 5788999999999999999888888876 6679999984
Q ss_pred ---------CCHHHHHHHHHHHH-----HcCC--CcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 004092 476 ---------ENIKALTHIILQVI-----TNGK--ISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (774)
Q Consensus 476 ---------~d~e~La~aI~~Ll-----~d~~--~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~ 525 (774)
.|+++|.++|.+.+ +++. +|..+.+|.++|.... ..|+|.+++++|.++|
T Consensus 532 ~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 532 YDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 78999999997655 2211 1345777777776655 5799999999999987
No 98
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.24 E-value=3.8e-11 Score=106.45 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=83.4
Q ss_pred EEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 004092 426 VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIG 505 (774)
Q Consensus 426 I~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~a 505 (774)
|++.|+... |++..++|+||||+|||+++.+++.+++.++.++++++ |+++++++|..+++| ++.+++++++|
T Consensus 1 i~Ln~~~~~--~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~---~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSD--GPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--DPEELAEKIEYLLEN---PEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCC--CCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence 467788776 89999999999999999999999999999998898887 999999999999999 99999999999
Q ss_pred HHHH-HhcCHHHHHHHHH
Q 004092 506 RRSV-KNLMALETIEGYA 522 (774)
Q Consensus 506 r~~a-k~fs~~~~a~~y~ 522 (774)
++.+ ++|+|++.++++.
T Consensus 74 ~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 9999 5799999998875
No 99
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.12 E-value=7e-09 Score=118.47 Aligned_cols=287 Identities=12% Similarity=0.112 Sum_probs=162.5
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhh--hhhHHHHHHHHHHHhccEEEccCCc----
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASS--GQLELLNDWKKVFNRATVVVFPDYV---- 287 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~--~~~~li~~~~~~~~~a~~vv~ps~~---- 287 (774)
..-|+|.+|..... .+..++.++..+.++.+.+|.. .+....... ....++ ...-.++.++|....
T Consensus 140 ~~~D~VWVhDYhL~-llP~~LR~~~~~~~IgfFlHiP---FPs~e~fr~lP~r~eiL----~glL~aDlIgFqt~~~~~n 211 (474)
T PF00982_consen 140 RPGDLVWVHDYHLM-LLPQMLRERGPDARIGFFLHIP---FPSSEIFRCLPWREEIL----RGLLGADLIGFQTFEYARN 211 (474)
T ss_dssp -TT-EEEEESGGGT-THHHHHHHTT--SEEEEEE-S-------HHHHTTSTTHHHHH----HHHTTSSEEEESSHHHHHH
T ss_pred cCCCEEEEeCCcHH-HHHHHHHhhcCCceEeeEEecC---CCCHHHHhhCCcHHHHH----HHhhcCCEEEEecHHHHHH
Confidence 46789999998884 7777777777788999999961 111111100 001111 111223333333222
Q ss_pred -----------------chhhcccCCCCCEEEeCCCCCCcccccccCch-----hhHHHHHHhCCCCCCEEEEEEecccc
Q 004092 288 -----------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDL-----YNDTVRVKMGFKPDDLVIAIVGTQFM 345 (774)
Q Consensus 288 -----------------~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~-----~k~~lR~~lgl~~~~~vIl~vGsrl~ 345 (774)
..+.+++ ..-.+.+.| .|+|...+...... ....++++++ .+..+|+.+. |++
T Consensus 212 Fl~~~~r~lg~~~~~~~~~v~~~G-r~v~v~~~p-igId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvD-rld 286 (474)
T PF00982_consen 212 FLSCCKRLLGLEVDSDRGTVEYNG-RRVRVGVFP-IGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVD-RLD 286 (474)
T ss_dssp HHHHHHHHS-EEEEETTE-EEETT-EEEEEEE-------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE---B-
T ss_pred HHHHHHHHcCCcccCCCceEEECC-EEEEEEEee-ccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEec-cch
Confidence 0000100 011244455 68887554322211 1344566654 3347899999 999
Q ss_pred cccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-C--CCCC---chHHHHHHHHHHc----CCCC-ccEEEcc-C
Q 004092 346 YRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-G--DSTS---NYSVVIEAIAHNL----HYPL-GVVKHMA-A 413 (774)
Q Consensus 346 ~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G--~~~e---~Y~~~L~~la~~l----gL~~-~~V~flG-~ 413 (774)
+. ||+..=++|+..+.+++|+ ...++.|+-++ . ...+ ++...+++++.+. |-.+ ..|.++- .
T Consensus 287 ~~---kGi~~kl~Afe~fL~~~P~---~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~ 360 (474)
T PF00982_consen 287 YT---KGIPEKLRAFERFLERYPE---YRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRS 360 (474)
T ss_dssp GG---G-HHHHHHHHHHHHHH-GG---GTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S-
T ss_pred hh---cCHHHHHHHHHHHHHhCcC---ccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecC
Confidence 98 9999999999999999997 44558888888 3 1222 2445555555442 2211 1255544 2
Q ss_pred c--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCC----EEEcCCcccccccccCccEEEEcCCCHHHHHHHHHH
Q 004092 414 E--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQ 487 (774)
Q Consensus 414 ~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~P----VIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~ 487 (774)
. +++..+|+.||+++.+|..+ |+-++..|+.+|..+ +|.|...|..+.+.++ .++++|.|++++|++|.+
T Consensus 361 ~~~~~~~aly~~aDv~lvTslrD--GmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~--al~VNP~d~~~~A~ai~~ 436 (474)
T PF00982_consen 361 LSFEELLALYRAADVALVTSLRD--GMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSEA--ALLVNPWDIEEVADAIHE 436 (474)
T ss_dssp --HHHHHHHHHH-SEEEE--SSB--S--HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS---EEE-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhEEecchhh--ccCCcceEEEEEecCCCCceEeeccCCHHHHcCCc--cEEECCCChHHHHHHHHH
Confidence 2 88999999999999999999 899999999999876 7889999998888762 489999999999999999
Q ss_pred HHHcCCCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004092 488 VITNGKISP-FARNIASIGRRSVKNLMALETIEGYAMLLE 526 (774)
Q Consensus 488 Ll~d~~~~~-~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e 526 (774)
.++. +. +++..-+..++.+.+++....++.+.+-++
T Consensus 437 AL~M---~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 437 ALTM---PPEERKERHARLREYVREHDVQWWAESFLRDLK 473 (474)
T ss_dssp HHT-----HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHcC---CHHHHHHHHHHHHHHhHhCCHHHHHHHHHHHhh
Confidence 9997 54 455555667788888999998888877654
No 100
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=4.8e-08 Score=107.14 Aligned_cols=320 Identities=15% Similarity=0.122 Sum_probs=193.3
Q ss_pred ChHHHHHHHHHHHHHHc--CCeEEEEEcCCCcchhhhhhcC--ccEEEcccch--hHHHHhhhcCccEEEEcCCchhHHH
Q 004092 157 DPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIG--VPVAILQTGR--EKASFVNWLNYDGILVNSLEAKVVI 230 (774)
Q Consensus 157 GG~e~~v~~Lak~L~~~--G~eV~V~t~~~~~~~~~~~~~g--i~i~~l~~~~--~l~~~i~~~~~DIIhvhs~~~~~~l 230 (774)
=|-...+..|.+.|.+. +..+.+-+..+......-+..+ +....++... ...++++..+||++++...+..+.+
T Consensus 59 VGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnl 138 (419)
T COG1519 59 VGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNL 138 (419)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHH
Confidence 36667888899999988 6666665544322222222222 3444455443 4567788899999887765542222
Q ss_pred HHHHhCCCCCCCEEEEEcCchhh-hhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCC
Q 004092 231 SNIMQEPFKSLPLVWTIHEGTLA-TRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAK 309 (774)
Q Consensus 231 ~~Ll~~~~~~ipvI~tiHg~~l~-~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd 309 (774)
..-. +..++|++. +.+ .+- +....| .++-...+..+...+.+..++.....-+..+...++.+.-|.-.|
T Consensus 139 i~e~--~~~~~p~~L-vNa-RLS~rS~~~y-----~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd 209 (419)
T COG1519 139 INEL--KRRGIPLVL-VNA-RLSDRSFARY-----AKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFD 209 (419)
T ss_pred HHHH--HHcCCCEEE-Eee-eechhhhHHH-----HHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcceEEecceeec
Confidence 2222 356788764 221 011 111111 111122333445555555555443333333333343333333333
Q ss_pred cccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCC
Q 004092 310 AWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTS 388 (774)
Q Consensus 310 ~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e 388 (774)
... .+........+|..++.+ .++++..++ .+ ..-+.++++...+++++|+ ..+++|= -|++
T Consensus 210 ~~~-~~~~~~~~~~~r~~l~~~--r~v~iaaST--H~----GEeei~l~~~~~l~~~~~~-------~llIlVPRHpER- 272 (419)
T COG1519 210 IEP-PPQLAAELAALRRQLGGH--RPVWVAAST--HE----GEEEIILDAHQALKKQFPN-------LLLILVPRHPER- 272 (419)
T ss_pred CCC-ChhhHHHHHHHHHhcCCC--CceEEEecC--CC----chHHHHHHHHHHHHhhCCC-------ceEEEecCChhh-
Confidence 210 111112245667776654 445655552 33 5667799999999999999 8888887 4544
Q ss_pred chHHHHHHHHHHcCCCC------------ccEEEccCcccHHHHHHHcCEEEEc-CccCcCCccHHHHHHHHcCCCEEEc
Q 004092 389 NYSVVIEAIAHNLHYPL------------GVVKHMAAEGDVDSVLNTADVVIYG-SFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 389 ~Y~~~L~~la~~lgL~~------------~~V~flG~~~dl~~~l~aaDI~V~P-S~~E~qGfp~~llEAMA~G~PVIat 455 (774)
-..+++++++.|+.- ..|.......++..+|..+||.+.. |+.+ --|.-++|+.++|+|||+-
T Consensus 273 --f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~--~GGHN~LEpa~~~~pvi~G 348 (419)
T COG1519 273 --FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVP--IGGHNPLEPAAFGTPVIFG 348 (419)
T ss_pred --HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccC--CCCCChhhHHHcCCCEEeC
Confidence 267778888876641 1243333447899999999996664 6665 3588899999999999985
Q ss_pred CC----cccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 004092 456 DL----SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (774)
Q Consensus 456 d~----ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~ 511 (774)
+. ..+.+.+.+...|+.++ |.+.++.++..++.| ++.+++|++++...+++
T Consensus 349 p~~~Nf~ei~~~l~~~ga~~~v~--~~~~l~~~v~~l~~~---~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 349 PYTFNFSDIAERLLQAGAGLQVE--DADLLAKAVELLLAD---EDKREAYGRAGLEFLAQ 403 (419)
T ss_pred CccccHHHHHHHHHhcCCeEEEC--CHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH
Confidence 43 34444454544577776 588999999999999 99999999999988854
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.11 E-value=6.2e-09 Score=117.78 Aligned_cols=285 Identities=9% Similarity=-0.002 Sum_probs=188.4
Q ss_pred CccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc---
Q 004092 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV--- 287 (774)
Q Consensus 215 ~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~--- 287 (774)
.-|+|.+|.... ..+..++.+.....++-+.+|-. .++..+.. ...++. ....++.++|....
T Consensus 123 ~~D~VWVHDYhL-~llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~-----r~eil~----glL~aDlIGFqt~~y~r 192 (474)
T PRK10117 123 DDDIIWIHDYHL-LPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPP-----HDELLE----QLCDYDLLGFQTENDRL 192 (474)
T ss_pred CCCEEEEeccHh-hHHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCCC-----hHHHHH----HHHhCccceeCCHHHHH
Confidence 448999999988 47777776667778999999961 11111100 001000 11111222221111
Q ss_pred -----------------chhhcccCCCCCEEEeCCCCCCcccccccCch----hhHHHHHHhCCCCCCEEEEEEeccccc
Q 004092 288 -----------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDL----YNDTVRVKMGFKPDDLVIAIVGTQFMY 346 (774)
Q Consensus 288 -----------------~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~----~k~~lR~~lgl~~~~~vIl~vGsrl~~ 346 (774)
....+. -..-.+.+.| +|||+..+...... ....++++++ +..+|+.+. |+++
T Consensus 193 nFl~~~~~~lg~~~~~~~~v~~~-gr~v~v~~~P-igID~~~~~~~a~~~~~~~~~~lr~~~~---~~~lilgVD-RLDy 266 (474)
T PRK10117 193 AFLDCLSNLTRVTTRSGKSHTAW-GKAFRTEVYP-IGIEPDEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVE-RLDY 266 (474)
T ss_pred HHHHHHHHHcCCcccCCCeEEEC-CeEEEEEEEE-CeEcHHHHHHHhhchHHHHHHHHHHHcC---CCeEEEEec-cccc
Confidence 000000 0011244555 78887554332221 1334555554 456888888 9999
Q ss_pred ccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCC---C---chHHHHHHHHHHcCCC----C-ccEEEccC--
Q 004092 347 RGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---S---NYSVVIEAIAHNLHYP----L-GVVKHMAA-- 413 (774)
Q Consensus 347 ~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~---e---~Y~~~L~~la~~lgL~----~-~~V~flG~-- 413 (774)
- ||+..=++|+..+.+++|+ -..++.|+-+..|.+ + +++..+++++.+.+-. + .-|.++..
T Consensus 267 t---KGi~~rl~Afe~fL~~~Pe---~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~ 340 (474)
T PRK10117 267 S---KGLPERFLAYEALLEKYPQ---HHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHF 340 (474)
T ss_pred c---cCHHHHHHHHHHHHHhChh---hcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCC
Confidence 8 8888889999999999997 444588887773322 2 3455566665543221 1 12555432
Q ss_pred -cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC-----CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHH
Q 004092 414 -EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK-----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQ 487 (774)
Q Consensus 414 -~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~-----PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~ 487 (774)
.+++..+|..||+++..|..+ |+-++..|+.||.. ++|.|...|..+.+.+ .++|+|.|++++|++|.+
T Consensus 341 ~~~~l~alyr~ADv~lVTplRD--GMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~~---AllVNP~d~~~~A~Ai~~ 415 (474)
T PRK10117 341 DRKLLMKIFRYSDVGLVTPLRD--GMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTS---ALIVNPYDRDEVAAALDR 415 (474)
T ss_pred CHHHHHHHHHhccEEEeccccc--ccccccchheeeecCCCCccEEEecccchHHHhCC---CeEECCCCHHHHHHHHHH
Confidence 278899999999999999999 89999999999976 3788999999888853 789999999999999999
Q ss_pred HHHcCCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 004092 488 VITNGKIS-PFARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (774)
Q Consensus 488 Ll~d~~~~-~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll 529 (774)
.++. + +++++.-+..++.+.+++....++.+.+-+.++.
T Consensus 416 AL~M---p~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 416 ALTM---PLAERISRHAEMLDVIVKNDINHWQECFISDLKQIV 455 (474)
T ss_pred HHcC---CHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Confidence 9997 5 3444555666778888999999999998887764
No 102
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.03 E-value=3.2e-09 Score=120.27 Aligned_cols=138 Identities=9% Similarity=0.129 Sum_probs=112.0
Q ss_pred HHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCC-CCchHHHHHHHHHHcCCCCccEEEccCcc-cHHHHHHHcCEEEEc
Q 004092 354 ALILRALLPLFSEVSVENESNSPIKVMILS-GDS-TSNYSVVIEAIAHNLHYPLGVVKHMAAEG-DVDSVLNTADVVIYG 430 (774)
Q Consensus 354 ~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~-~e~Y~~~L~~la~~lgL~~~~V~flG~~~-dl~~~l~aaDI~V~P 430 (774)
...|+++..|.++.|+ ++|.| | +.. . ..|+++ .++ ++ .+.+.|+.. ++.++|..||+++..
T Consensus 291 s~~I~~i~~Lv~~lPd-------~~f~I-ga~te~s----~kL~~L-~~y--~n-vvly~~~~~~~l~~ly~~~dlyLdi 354 (438)
T TIGR02919 291 SDQIEHLEEIVQALPD-------YHFHI-AALTEMS----SKLMSL-DKY--DN-VKLYPNITTQKIQELYQTCDIYLDI 354 (438)
T ss_pred HHHHHHHHHHHHhCCC-------cEEEE-EecCccc----HHHHHH-Hhc--CC-cEEECCcChHHHHHHHHhccEEEEc
Confidence 4459999999999999 99999 8 654 4 677788 644 76 788888775 999999999999999
Q ss_pred CccCcCCccHHHHHHHHcCCCEEEcCCc-ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 004092 431 SFLEEQTFPEILVKALCFRKPIIAPDLS-NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (774)
Q Consensus 431 S~~E~qGfp~~llEAMA~G~PVIatd~g-gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a 509 (774)
|..| |+++++.|||+.|+|||+.+.. |..+++.+ |.+++.+++++|+++|..++.+ ++..++.-..-++.|
T Consensus 355 n~~e--~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d---~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 355 NHGN--EILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND---PNQFRELLEQQREHA 426 (438)
T ss_pred cccc--cHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHh
Confidence 9999 8999999999999999998765 45577766 8899999999999999999999 876665444434444
Q ss_pred HhcCHH
Q 004092 510 KNLMAL 515 (774)
Q Consensus 510 k~fs~~ 515 (774)
..-+.+
T Consensus 427 ~~~~~~ 432 (438)
T TIGR02919 427 NDISKE 432 (438)
T ss_pred ccCCHH
Confidence 333433
No 103
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.02 E-value=3.1e-08 Score=112.93 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=77.4
Q ss_pred cHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccccccc-----CccEEEEcC---CCH----HHHHH
Q 004092 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD-----RVNGYLFPK---ENI----KALTH 483 (774)
Q Consensus 416 dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d-----g~~G~Lv~~---~d~----e~La~ 483 (774)
+..+++..||+.|+||++|+ +|.+.+|+.++|+|.|+|+..|....+.+ ...|+.+-. .+. +++++
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEP--WGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~ 539 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEP--WGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLAD 539 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBS--S-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHH
T ss_pred CHHHHhccCceeeecccccc--ccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 56789999999999999995 99999999999999999999988654432 234655432 334 45555
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 484 IILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 484 aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
.|..+.... ...+..+.+++...++.++|+++..-|.+.++-+++
T Consensus 540 ~l~~f~~~~--~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 540 FLYKFCQLS--RRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp HHHHHHT----HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhCC--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 555555540 334556777777777889999999999999987765
No 104
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=6.7e-08 Score=109.06 Aligned_cols=286 Identities=12% Similarity=0.111 Sum_probs=186.0
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc--
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-- 287 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~-- 287 (774)
.+=|+|.+|.... ..++.++..+....++.+++|-. .++..+.. ...++. ....++.+.|....
T Consensus 146 ~~gDiIWVhDYhL-~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~-----r~eIl~----gll~~dligFqt~~y~ 215 (486)
T COG0380 146 EPGDIIWVHDYHL-LLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPW-----REEILE----GLLGADLIGFQTESYA 215 (486)
T ss_pred CCCCEEEEEechh-hhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCch-----HHHHHH----HhhcCCeeEecCHHHH
Confidence 3459999999988 37777776667777899999951 11111110 011110 11123333332222
Q ss_pred ----------------chhhcccCCC--CCEEEeCCCCCCcccccccCchh-----hHHHHHHhCCCCCCEEEEEEeccc
Q 004092 288 ----------------LPMMYSAFDA--GNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQF 344 (774)
Q Consensus 288 ----------------~~~i~~~v~~--~ki~vIpg~gvd~~~~~~~~~~~-----k~~lR~~lgl~~~~~vIl~vGsrl 344 (774)
....+++.+. .++..+| +|+|+..+....+.. -.++++.++ .+..+|+.+. |+
T Consensus 216 ~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~P-IgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvD-Rl 291 (486)
T COG0380 216 RNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFP-IGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVD-RL 291 (486)
T ss_pred HHHHHHHHHhccccccccccccccCCceEEEEEEe-eecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEeh-hc
Confidence 0011111111 2345555 788876554333222 233444443 3367888888 99
Q ss_pred ccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCC---Cc---hHHHHHHHHHHcC----CCC-ccEEEccC
Q 004092 345 MYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---SN---YSVVIEAIAHNLH----YPL-GVVKHMAA 413 (774)
Q Consensus 345 ~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~---e~---Y~~~L~~la~~lg----L~~-~~V~flG~ 413 (774)
.+- ||+..=+.|+.++..++|+ -+.++.|+-++.+.+ ++ ++..++..+.+.+ -.+ ..|.++-.
T Consensus 292 Dy~---kGi~~rl~Afe~lL~~~Pe---~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~ 365 (486)
T COG0380 292 DYS---KGIPQRLLAFERLLEEYPE---WRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHR 365 (486)
T ss_pred ccc---cCcHHHHHHHHHHHHhChh---hhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEec
Confidence 998 8888889999999999997 445588888883222 23 3444444444322 111 12555542
Q ss_pred ---cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC----CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHH
Q 004092 414 ---EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIIL 486 (774)
Q Consensus 414 ---~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~----PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~ 486 (774)
.+++..+|..||+++..|..+ |+-++..|+.||-- |.|-|...|....+.+ .++++|.|.+++|++|.
T Consensus 366 ~~~~~~l~al~~~aDv~lVtplrD--GMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai~ 440 (486)
T COG0380 366 DLDRNELLALYRAADVMLVTPLRD--GMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADAIK 440 (486)
T ss_pred cCCHHHHHHHHhhhceeeeccccc--cccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHHHH
Confidence 278999999999999999999 99999999999864 7888998888888866 78999999999999999
Q ss_pred HHHHcCCCcHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004092 487 QVITNGKISPF-ARNIASIGRRSVKNLMALETIEGYAMLLEN 527 (774)
Q Consensus 487 ~Ll~d~~~~~~-r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ 527 (774)
+.|+. +.. +++.-+..++.+..++....++.+.+-+..
T Consensus 441 ~AL~m---~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 441 RALTM---SLEERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred HHhcC---CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99997 544 444445566777788988888887776654
No 105
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.90 E-value=1.4e-07 Score=114.66 Aligned_cols=285 Identities=10% Similarity=0.080 Sum_probs=185.8
Q ss_pred cEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc-----
Q 004092 217 DGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV----- 287 (774)
Q Consensus 217 DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~----- 287 (774)
|+|.+|.... ..+..++.++....++-+.+|-. .++..++ ..+.++. ..-.++.++|....
T Consensus 203 d~VWVhDYhL-~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP-----~r~eiL~----glL~aDlIGFht~~yar~F 272 (854)
T PLN02205 203 DFVWIHDYHL-MVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLP-----IREELLR----ALLNSDLIGFHTFDYARHF 272 (854)
T ss_pred CEEEEeCchh-hHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCC-----cHHHHHH----HHhcCCeEEecCHHHHHHH
Confidence 8999999988 47777777777888999999961 1111110 0011110 11122222222221
Q ss_pred ------------------chhhcccCCCCCEEEeCCCCCCcccccccCchh-----hHHHHHHhCCCCCCEEEEEEeccc
Q 004092 288 ------------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQF 344 (774)
Q Consensus 288 ------------------~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~-----k~~lR~~lgl~~~~~vIl~vGsrl 344 (774)
....+.+ ..-.+.+.| +|+|...+....... .++++++++- ++..+|+.+. |+
T Consensus 273 l~~~~r~lgl~~~~~~g~~~~~~~G-r~v~v~~~P-igId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVD-rl 348 (854)
T PLN02205 273 LSCCSRMLGLSYESKRGYIGLEYYG-RTVSIKILP-VGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVD-DM 348 (854)
T ss_pred HHHHHHHhCCcccCCCcceeEEECC-cEEEEEEEe-CeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEcc-Cc
Confidence 0000100 111244555 788875543332211 2345555542 2456888888 99
Q ss_pred ccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCC---C---chHHHHHHHHHHc----CCCC-ccEEEcc-
Q 004092 345 MYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---S---NYSVVIEAIAHNL----HYPL-GVVKHMA- 412 (774)
Q Consensus 345 ~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~---e---~Y~~~L~~la~~l----gL~~-~~V~flG- 412 (774)
.+- ||+..=+.|+.++.+++|+ -..++.|+-+.-|.+ + +++..+.+++.+. |-.+ ..|.++.
T Consensus 349 D~~---KGi~~kl~A~e~~L~~~P~---~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~ 422 (854)
T PLN02205 349 DIF---KGISLKLLAMEQLLMQHPE---WQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDA 422 (854)
T ss_pred ccc---cCHHHHHHHHHHHHHhCcc---ccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEec
Confidence 998 8898999999999999997 334578887773322 2 3344455555542 2211 1255554
Q ss_pred C--cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC-------------------CEEEcCCcccccccccCccEE
Q 004092 413 A--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK-------------------PIIAPDLSNIRKYVDDRVNGY 471 (774)
Q Consensus 413 ~--~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~-------------------PVIatd~ggi~EiV~dg~~G~ 471 (774)
. .+++..+|+.||+++..+..+ |+-++..|+.+|.. .+|.|...|....+.. .+
T Consensus 423 ~~~~~e~~aly~~ADv~lVT~lRD--GMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~~---Ai 497 (854)
T PLN02205 423 PLKFYERVAYYVVAECCLVTAVRD--GMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLSG---AI 497 (854)
T ss_pred CCCHHHHHHHHHhccEEEeccccc--cccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhCc---Ce
Confidence 2 288999999999999999999 89999999999864 3678888888777742 78
Q ss_pred EEcCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 004092 472 LFPKENIKALTHIILQVITNGKISP-FARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (774)
Q Consensus 472 Lv~~~d~e~La~aI~~Ll~d~~~~~-~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll 529 (774)
+|+|.|++++|++|.+.++. +. +++..-+..++++.+++....++.+..-++.+.
T Consensus 498 ~VNP~d~~~~a~ai~~AL~m---~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~~ 553 (854)
T PLN02205 498 RVNPWNIDAVADAMDSALEM---AEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTC 553 (854)
T ss_pred EECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 53 344444566778888999998888887776653
No 106
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.83 E-value=3.6e-07 Score=102.89 Aligned_cols=168 Identities=15% Similarity=0.195 Sum_probs=109.5
Q ss_pred CCCCCC-EEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCC-
Q 004092 329 GFKPDD-LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPL- 405 (774)
Q Consensus 329 gl~~~~-~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~- 405 (774)
+++++. .+++..|||.... .+++..+++|+..+.++ ++ +.+++.- |... .+.+++...+.++..
T Consensus 200 ~l~~~~~~lllLpGSR~ae~--~~~lp~~l~al~~L~~~-~~-------~~~v~~~~~~~~---~~~~~~~l~~~g~~~~ 266 (396)
T TIGR03492 200 PLLTGRFRIALLPGSRPPEA--YRNLKLLLRALEALPDS-QP-------FVFLAAIVPSLS---LEKLQAILEDLGWQLE 266 (396)
T ss_pred ccCCCCCEEEEECCCCHHHH--HccHHHHHHHHHHHhhC-CC-------eEEEEEeCCCCC---HHHHHHHHHhcCceec
Confidence 444443 4555556553332 26778999999999755 55 7777655 4322 145555555445431
Q ss_pred ------------ccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc---ccccc----
Q 004092 406 ------------GVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR---KYVDD---- 466 (774)
Q Consensus 406 ------------~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~---EiV~d---- 466 (774)
+.+.+..+..++..+|++||++|..| | .+-.|++++|+|+|..+..+.. .+...
T Consensus 267 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS-----G--t~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l 339 (396)
T TIGR03492 267 GSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-----G--TATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRL 339 (396)
T ss_pred CCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-----C--HHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhh
Confidence 13666667788999999999999987 3 3449999999999998754331 22222
Q ss_pred -CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 004092 467 -RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (774)
Q Consensus 467 -g~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~ 520 (774)
+ .++.+...+++.+++++..+++| ++.+++|.+++++.. +....+.+++.
T Consensus 340 ~g-~~~~l~~~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~lg~~~a~~~ia~~ 391 (396)
T TIGR03492 340 LG-GSVFLASKNPEQAAQVVRQLLAD---PELLERCRRNGQERMGPPGASARIAES 391 (396)
T ss_pred cC-CEEecCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3 34555567889999999999999 888888875444333 33444455443
No 107
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.81 E-value=1.6e-06 Score=93.18 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=137.7
Q ss_pred cCCCCC-hHHHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhhhhhcCccEEEcccch-------hHHHHhhhcCccEEEEc
Q 004092 152 PDLLID-PQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAILQTGR-------EKASFVNWLNYDGILVN 222 (774)
Q Consensus 152 ~~L~~G-G~e~~v~~Lak~L~~~G~eV~V~t~~~~~~-~~~~~~~gi~i~~l~~~~-------~l~~~i~~~~~DIIhvh 222 (774)
++..+| |--..+..||+.|.++|++|..++...... ....+..+.++..++... .+...++..+||+|++.
T Consensus 8 a~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D 87 (279)
T TIGR03590 8 ASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVD 87 (279)
T ss_pred CCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEc
Confidence 344455 666789999999999999999999876443 345567777777665432 35566777899999999
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc-chhhccc-CCCCCE
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPMMYSA-FDAGNY 300 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~-~~~i~~~-v~~~ki 300 (774)
+......+...+.. .+++++ .+.+.... . + .++.+.-++.. ....|.. ++...
T Consensus 88 ~y~~~~~~~~~~k~--~~~~l~-~iDD~~~~-~---~-----------------~~D~vin~~~~~~~~~y~~~~~~~~- 142 (279)
T TIGR03590 88 HYGLDADWEKLIKE--FGRKIL-VIDDLADR-P---H-----------------DCDLLLDQNLGADASDYQGLVPANC- 142 (279)
T ss_pred CCCCCHHHHHHHHH--hCCeEE-EEecCCCC-C---c-----------------CCCEEEeCCCCcCHhHhcccCcCCC-
Confidence 87654333333321 233433 33321000 0 0 11111111110 0011111 11122
Q ss_pred EEeCCC---CCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCe
Q 004092 301 YVIPGS---PAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPI 377 (774)
Q Consensus 301 ~vIpg~---gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v 377 (774)
.+.-|. ++.. ++.... .....-++...+++++| -..+. +....+++++..+.. + +
T Consensus 143 ~~l~G~~Y~~lr~---eF~~~~-----~~~~~~~~~~~iLi~~G-G~d~~---~~~~~~l~~l~~~~~---~-------~ 200 (279)
T TIGR03590 143 RLLLGPSYALLRE---EFYQLA-----TANKRRKPLRRVLVSFG-GADPD---NLTLKLLSALAESQI---N-------I 200 (279)
T ss_pred eEEecchHHhhhH---HHHHhh-----HhhhcccccCeEEEEeC-CcCCc---CHHHHHHHHHhcccc---C-------c
Confidence 222232 2221 110000 00000012244777777 44453 445566777776532 2 4
Q ss_pred EEE-EEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 378 KVM-ILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 378 ~Lv-IvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
++. ++| +... ..+.+++.++. .+ +|.+.++++++.++|+.||++|.+. |.++.|++++|+|+|+-.
T Consensus 201 ~i~vv~G-~~~~-~~~~l~~~~~~--~~--~i~~~~~~~~m~~lm~~aDl~Is~~-------G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 201 SITLVTG-SSNP-NLDELKKFAKE--YP--NIILFIDVENMAELMNEADLAIGAA-------GSTSWERCCLGLPSLAIC 267 (279)
T ss_pred eEEEEEC-CCCc-CHHHHHHHHHh--CC--CEEEEeCHHHHHHHHHHCCEEEECC-------chHHHHHHHcCCCEEEEE
Confidence 444 555 2211 12667777763 22 5999999999999999999999853 479999999999999876
Q ss_pred Cc
Q 004092 457 LS 458 (774)
Q Consensus 457 ~g 458 (774)
..
T Consensus 268 ~~ 269 (279)
T TIGR03590 268 LA 269 (279)
T ss_pred ec
Confidence 53
No 108
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.8e-06 Score=97.35 Aligned_cols=332 Identities=11% Similarity=0.090 Sum_probs=203.3
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc--chhhhhhcCc-cEEEcc--cchhHHHHhhhcCc
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR--AHEVWRNIGV-PVAILQ--TGREKASFVNWLNY 216 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~--~~~~~~~~gi-~i~~l~--~~~~l~~~i~~~~~ 216 (774)
.+++||.++..+|..-.....+..+.+.+.+-.+||..+..+... ..+.+-...+ .+..+. .......-|...+.
T Consensus 257 ~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~I 336 (620)
T COG3914 257 GKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGI 336 (620)
T ss_pred ccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcCC
Confidence 345899999999999888888999999999888998888877322 1122211111 122332 23445666777889
Q ss_pred cEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchh--hhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhccc
Q 004092 217 DGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL--ATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSA 294 (774)
Q Consensus 217 DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l--~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~ 294 (774)
||.+--+.........+++ .+..|+.+++=|.+- ..+...|. .++.+++|...-.. |
T Consensus 337 dILvDl~g~T~d~r~~v~A--~RpAPiqvswlGy~aT~g~p~~DY~----------------I~D~y~vPp~ae~y-y-- 395 (620)
T COG3914 337 DILVDLDGHTVDTRCQVFA--HRPAPIQVSWLGYPATTGSPNMDYF----------------ISDPYTVPPTAEEY-Y-- 395 (620)
T ss_pred eEEEeccCceeccchhhhh--cCCCceEEeecccccccCCCcceEE----------------eeCceecCchHHHH-H--
Confidence 9877543332112222232 334688887776221 10111111 11111111100000 0
Q ss_pred CCCCCEEEeC--CCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 004092 295 FDAGNYYVIP--GSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (774)
Q Consensus 295 v~~~ki~vIp--g~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~ 372 (774)
.+++.-+| ..|+|-. ....+. ..|..+|++++.++.++++ .+. |-...+++-..++.+.-|+
T Consensus 396 --sEkl~RLp~cy~p~d~~--~~v~p~---~sR~~lglp~~avVf~c~~---n~~---K~~pev~~~wmqIL~~vP~--- 459 (620)
T COG3914 396 --SEKLWRLPQCYQPVDGF--EPVTPP---PSRAQLGLPEDAVVFCCFN---NYF---KITPEVFALWMQILSAVPN--- 459 (620)
T ss_pred --HHHHHhcccccCCCCCc--ccCCCC---cchhhcCCCCCeEEEEecC---Ccc---cCCHHHHHHHHHHHHhCCC---
Confidence 00000000 0011110 000000 1267899999986666666 223 6677778888899999998
Q ss_pred CCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC
Q 004092 373 SNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK 450 (774)
Q Consensus 373 ~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~ 450 (774)
-.|++.||+..++..+.+++++++.|+...++.|.+.. ++..+.|.-||+++=..-+. -..+.+||+-+|+
T Consensus 460 ----Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~---g~TTa~daLwm~v 532 (620)
T COG3914 460 ----SVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYG---GHTTASDALWMGV 532 (620)
T ss_pred ----cEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCC---CccchHHHHHhcC
Confidence 78999995566677889999999999988899999965 67788999999999665443 4678899999999
Q ss_pred CEEEcC-------Cc-------ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH---hcC
Q 004092 451 PIIAPD-------LS-------NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK---NLM 513 (774)
Q Consensus 451 PVIatd-------~g-------gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak---~fs 513 (774)
|||+-. .| |++|.| +. +.++..+.-..+=+| ...+++.+..-+...+ -|+
T Consensus 533 PVlT~~G~~FasR~~~si~~~agi~e~v--------A~--s~~dYV~~av~~g~d---ral~q~~r~~l~~~r~tspL~d 599 (620)
T COG3914 533 PVLTRVGEQFASRNGASIATNAGIPELV--------AD--SRADYVEKAVAFGSD---RALRQQVRAELKRSRQTSPLFD 599 (620)
T ss_pred ceeeeccHHHHHhhhHHHHHhcCCchhh--------cC--CHHHHHHHHHHhccc---HHHHHhhHHHHHhccccCcccC
Confidence 999732 22 333333 22 556666666666666 6666666554444442 379
Q ss_pred HHHHHHHHHHHHHHHhc
Q 004092 514 ALETIEGYAMLLENVLK 530 (774)
Q Consensus 514 ~~~~a~~y~~L~e~ll~ 530 (774)
.+..+..+..+|..+.+
T Consensus 600 ~~~far~le~~y~~M~~ 616 (620)
T COG3914 600 PKAFARKLETLYWGMWS 616 (620)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 109
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.65 E-value=1.4e-05 Score=89.79 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=63.1
Q ss_pred CCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----ccccccCccEEEEcCC-
Q 004092 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDRVNGYLFPKE- 476 (774)
Q Consensus 402 gL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~EiV~dg~~G~Lv~~~- 476 (774)
.+++ +|.+.++. ....+|..||++|.- |-.+++.||+++|+|+|..+..+- .+.+.+...|...+..
T Consensus 285 ~~~~-~v~~~~~~-p~~~ll~~~d~~I~h------gG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~ 356 (401)
T cd03784 285 DLPD-NVRVVDFV-PHDWLLPRCAAVVHH------GGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRE 356 (401)
T ss_pred CCCC-ceEEeCCC-CHHHHhhhhheeeec------CCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCccc
Confidence 4555 89999997 467889999999943 335899999999999999876642 3344444457766654
Q ss_pred -CHHHHHHHHHHHHHc
Q 004092 477 -NIKALTHIILQVITN 491 (774)
Q Consensus 477 -d~e~La~aI~~Ll~d 491 (774)
+++++++++.+++++
T Consensus 357 ~~~~~l~~al~~~l~~ 372 (401)
T cd03784 357 LTAERLAAALRRLLDP 372 (401)
T ss_pred CCHHHHHHHHHHHhCH
Confidence 689999999999987
No 110
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.63 E-value=5.1e-08 Score=94.97 Aligned_cols=155 Identities=15% Similarity=0.012 Sum_probs=78.3
Q ss_pred CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh--hhcC--------ccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 153 DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--RNIG--------VPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 153 ~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~--~~~g--------i~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
....||+|+++.+++++|.++||+|+|++....+..... .... ...........+...++..+||+||+|
T Consensus 8 ~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiVh~~ 87 (177)
T PF13439_consen 8 LPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIVHIH 87 (177)
T ss_dssp TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEEECC
T ss_pred CCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeEEec
Confidence 456899999999999999999999999998664322111 0000 001111112335556777899999999
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHH-HHHHHHHhccEEEccCCcchh--hcccCCCCC
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLN-DWKKVFNRATVVVFPDYVLPM--MYSAFDAGN 299 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~-~~~~~~~~a~~vv~ps~~~~~--i~~~v~~~k 299 (774)
..... ....+... ++|+|++.|+.................+.. .....+..++.++..+..... ...+++.++
T Consensus 88 ~~~~~-~~~~~~~~---~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~~~~~~~k 163 (177)
T PF13439_consen 88 GPPAF-WIALLACR---KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIKFGIPPEK 163 (177)
T ss_dssp TTHCC-CHHHHHHH---CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHHHT--SS-
T ss_pred ccchh-HHHHHhcc---CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHHhCCcccC
Confidence 87652 22222211 689999999643210000001111111111 122235667777777666322 223567789
Q ss_pred EEEeCCCCCCccc
Q 004092 300 YYVIPGSPAKAWE 312 (774)
Q Consensus 300 i~vIpg~gvd~~~ 312 (774)
+.+||| |+|...
T Consensus 164 i~vI~n-gid~~~ 175 (177)
T PF13439_consen 164 IHVIYN-GIDTDR 175 (177)
T ss_dssp EEE-----B-CCC
T ss_pred CEEEEC-CccHHH
Confidence 999994 888743
No 111
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.62 E-value=1.9e-05 Score=88.64 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=75.1
Q ss_pred CCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc----cccccCccEEEEcCC--
Q 004092 403 YPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR----KYVDDRVNGYLFPKE-- 476 (774)
Q Consensus 403 L~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~----EiV~dg~~G~Lv~~~-- 476 (774)
+++ +|.+.+++.. ..++..||++|..+ | ..+++|||++|+|+|+.+..+-. +.+.+...|..++..
T Consensus 273 ~~~-~v~~~~~~p~-~~ll~~~~~~I~hg-----G-~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~ 344 (392)
T TIGR01426 273 LPP-NVEVRQWVPQ-LEILKKADAFITHG-----G-MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEV 344 (392)
T ss_pred CCC-CeEEeCCCCH-HHHHhhCCEEEECC-----C-chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccC
Confidence 455 7999998854 48899999999754 3 35889999999999997655433 334444457766643
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004092 477 NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAM 523 (774)
Q Consensus 477 d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~ 523 (774)
++++++++|.++++| ++.++++.+.+......-..+..++...+
T Consensus 345 ~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~~~~~~~~aa~~i~~ 388 (392)
T TIGR01426 345 TAEKLREAVLAVLSD---PRYAERLRKMRAEIREAGGARRAADEIEG 388 (392)
T ss_pred CHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578999999999999 76555554443333333345555544443
No 112
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.60 E-value=3.4e-06 Score=94.07 Aligned_cols=245 Identities=13% Similarity=0.076 Sum_probs=136.7
Q ss_pred HHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCch-hhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccC
Q 004092 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT-LATRARNYASSGQLELLNDWKKVFNRATVVVFPD 285 (774)
Q Consensus 207 l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~-l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps 285 (774)
+..++...+||+|+++.-....+-..+. ....++|++. +|+.. .....+....+..+++ ++....|+
T Consensus 85 ~~~~~~~~~Pd~vlv~GD~~~~la~ala-A~~~~IPv~H-veaG~rs~~~~eE~~r~~i~~l----------a~l~f~~t 152 (365)
T TIGR03568 85 FSDAFERLKPDLVVVLGDRFEMLAAAIA-AALLNIPIAH-IHGGEVTEGAIDESIRHAITKL----------SHLHFVAT 152 (365)
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHH-HHHhCCcEEE-EECCccCCCCchHHHHHHHHHH----------HhhccCCC
Confidence 4555777999999999966532333333 3366799873 45421 1111111111111111 11111122
Q ss_pred Cc--chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCC-CEEEEEEecccc--cccccccHHHHHHHH
Q 004092 286 YV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPD-DLVIAIVGTQFM--YRGLWLEHALILRAL 360 (774)
Q Consensus 286 ~~--~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~-~~vIl~vGsrl~--~~KgiKg~~lLLeA~ 360 (774)
.. ......+.+..+++++-+.++|...... ...+..+.+++|++.+ +.+++.+- +.. +......+..+++++
T Consensus 153 ~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~--~~~~~~~~~~lgl~~~~~~vlvt~H-p~~~~~~~~~~~l~~li~~L 229 (365)
T TIGR03568 153 EEYRQRVIQMGEDPDRVFNVGSPGLDNILSLD--LLSKEELEEKLGIDLDKPYALVTFH-PVTLEKESAEEQIKELLKAL 229 (365)
T ss_pred HHHHHHHHHcCCCCCcEEEECCcHHHHHHhhh--ccCHHHHHHHhCCCCCCCEEEEEeC-CCcccccCchHHHHHHHHHH
Confidence 22 1122345556677777666666422111 1124567788888754 44444444 332 321124455556666
Q ss_pred HHchhhcccCCCCCCCeEEEEE-eCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCC
Q 004092 361 LPLFSEVSVENESNSPIKVMIL-SGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQT 437 (774)
Q Consensus 361 ~~L~~~~p~~~~~~~~v~LvIv-GG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qG 437 (774)
..+. .+ +.++.- +++......+.++++.. . .+ +|.+++.. .++..+++.||++|.-|
T Consensus 230 ~~~~---~~-------~~vi~P~~~p~~~~i~~~i~~~~~--~-~~-~v~l~~~l~~~~~l~Ll~~a~~vitdS------ 289 (365)
T TIGR03568 230 DELN---KN-------YIFTYPNADAGSRIINEAIEEYVN--E-HP-NFRLFKSLGQERYLSLLKNADAVIGNS------ 289 (365)
T ss_pred HHhc---cC-------CEEEEeCCCCCchHHHHHHHHHhc--C-CC-CEEEECCCChHHHHHHHHhCCEEEEcC------
Confidence 5542 12 422221 23443223333433321 1 23 69999965 89999999999999655
Q ss_pred ccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 438 FPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 438 fp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+..+.||.++|+|||+- +.-+|.+..|.+.+++. .|++++.+++.++ .+
T Consensus 290 -Sggi~EA~~lg~Pvv~l--~~R~e~~~~g~nvl~vg-~~~~~I~~a~~~~-~~ 338 (365)
T TIGR03568 290 -SSGIIEAPSFGVPTINI--GTRQKGRLRADSVIDVD-PDKEEIVKAIEKL-LD 338 (365)
T ss_pred -hhHHHhhhhcCCCEEee--cCCchhhhhcCeEEEeC-CCHHHHHHHHHHH-hC
Confidence 22337999999999954 56778888888888784 4899999999994 45
No 113
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.59 E-value=8.1e-07 Score=106.46 Aligned_cols=185 Identities=14% Similarity=0.136 Sum_probs=133.9
Q ss_pred CCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCc----hHHHHHHHHHHcCCC
Q 004092 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSN----YSVVIEAIAHNLHYP 404 (774)
Q Consensus 330 l~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~----Y~~~L~~la~~lgL~ 404 (774)
++++.++|+++. |+... |+.+++++.+.++.+-.. +...+++++++| +..... +...+.+++++....
T Consensus 474 ldpd~ltigfar-Rfa~Y---KR~~Lil~dl~rl~~il~---~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~ 546 (778)
T cd04299 474 LDPNVLTIGFAR-RFATY---KRATLLLRDPERLKRLLN---DPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR 546 (778)
T ss_pred cCCCccEEeeee-cchhh---hhHHHHHHHHHHHHHHhh---CCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC
Confidence 445666777777 88777 999999999888854210 111348999999 643322 333455555544566
Q ss_pred CccEEEc-cCcccH-HHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcC-----
Q 004092 405 LGVVKHM-AAEGDV-DSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK----- 475 (774)
Q Consensus 405 ~~~V~fl-G~~~dl-~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~----- 475 (774)
+ +|.|+ ++...+ ..+++.||+.+.||. .| ..|.+=+-||..|.+-+++--|...|.. ++.|||.+.+
T Consensus 547 ~-kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~E--AsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~ 622 (778)
T cd04299 547 G-RIVFLEDYDMALARHLVQGVDVWLNTPRRPLE--ASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYE 622 (778)
T ss_pred C-cEEEEcCCCHHHHHHHHhhhhhcccCCCCCCC--CCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCcccc
Confidence 6 67776 565444 568899999999999 88 4777889999999999999998888877 7889999988
Q ss_pred -------CCHHHHHHHHHHHHH----c---CCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 004092 476 -------ENIKALTHIILQVIT----N---GKISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (774)
Q Consensus 476 -------~d~e~La~aI~~Ll~----d---~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~ 525 (774)
.|+++|.+.|.+-+- + +-+|..+.+|.+++.... ..|++.+|+..|.+-+
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 566777777754332 2 013566777777777665 6899999999997754
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.59 E-value=2e-06 Score=97.28 Aligned_cols=182 Identities=9% Similarity=0.039 Sum_probs=121.8
Q ss_pred HHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCC
Q 004092 324 VRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHY 403 (774)
Q Consensus 324 lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL 403 (774)
.|+.+|++++.+++.++. + .. |-.+..++++.++.+..|+ .+|++...+.. -.+.+++.+++.|+
T Consensus 275 ~R~~~gLp~d~vvF~~fn-~--~~---KI~p~~l~~W~~IL~~vP~-------S~L~L~~~~~~--~~~~l~~~~~~~Gv 339 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFN-N--LF---KISPETLDLWARILKAVPN-------SRLWLLRFPAS--GEARLRRRFAAHGV 339 (468)
T ss_dssp ETGGGT--SSSEEEEE-S----GG---G--HHHHHHHHHHHHHSTT-------EEEEEEETSTT--HHHHHHHHHHHTTS
T ss_pred CHHHcCCCCCceEEEecC-c--cc---cCCHHHHHHHHHHHHhCCC-------cEEEEeeCCHH--HHHHHHHHHHHcCC
Confidence 478999999986666666 2 22 6677889999999999999 89988874332 23778889999999
Q ss_pred CCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccc-----cc-ccCccEEEEcC
Q 004092 404 PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK-----YV-DDRVNGYLFPK 475 (774)
Q Consensus 404 ~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~E-----iV-~dg~~G~Lv~~ 475 (774)
..++|.|.+.. ++-...++.+||++=+..+. -+.+.+||+.+|+|||+-.-..... ++ .=|..-++.
T Consensus 340 ~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~n---G~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA-- 414 (468)
T PF13844_consen 340 DPDRIIFSPVAPREEHLRRYQLADICLDTFPYN---GGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA-- 414 (468)
T ss_dssp -GGGEEEEE---HHHHHHHGGG-SEEE--SSS-----SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB---
T ss_pred ChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCC---CcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC--
Confidence 87799999854 45556778899999886554 4889999999999999965332211 11 111122233
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hh--cCHHHHHHHHHHHHHHH
Q 004092 476 ENIKALTHIILQVITNGKISPFARNIASIGRRSV-KN--LMALETIEGYAMLLENV 528 (774)
Q Consensus 476 ~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~--fs~~~~a~~y~~L~e~l 528 (774)
.|.+++.+.-.++.+| ++.++++.+.-++.. +. |+....+..+++.|+.+
T Consensus 415 ~s~~eYv~~Av~La~D---~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 415 DSEEEYVEIAVRLATD---PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp SSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 3789999999999999 999999998887766 32 88889999999888764
No 115
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.51 E-value=1.9e-05 Score=86.48 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=61.4
Q ss_pred CCCccEEEccCc-ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccc------ccccCccEEEEcC
Q 004092 403 YPLGVVKHMAAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK------YVDDRVNGYLFPK 475 (774)
Q Consensus 403 L~~~~V~flG~~-~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~E------iV~dg~~G~Lv~~ 475 (774)
+.+ ++.+.++. +++.++|..||++|.-+ |+ .++.||+++|+|+|..+..+..| .+.+...|...+.
T Consensus 227 ~~~-~v~~~~~~~~~~~~~l~~ad~vI~~~-----G~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~ 299 (321)
T TIGR00661 227 YNE-NVEIRRITTDNFKELIKNAELVITHG-----GF-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299 (321)
T ss_pred cCC-CEEEEECChHHHHHHHHhCCEEEECC-----Ch-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcCh
Confidence 345 79998988 58999999999999876 23 36999999999999988876444 3445455888887
Q ss_pred CCHHHHHHHHHHHHHc
Q 004092 476 ENIKALTHIILQVITN 491 (774)
Q Consensus 476 ~d~e~La~aI~~Ll~d 491 (774)
.+. ++.+++...+++
T Consensus 300 ~~~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 300 KEL-RLLEAILDIRNM 314 (321)
T ss_pred hhH-HHHHHHHhcccc
Confidence 777 566666666655
No 116
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.49 E-value=4e-07 Score=87.07 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc------------hhHHHHh--hhcCccEEEEc
Q 004092 157 DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------------REKASFV--NWLNYDGILVN 222 (774)
Q Consensus 157 GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~------------~~l~~~i--~~~~~DIIhvh 222 (774)
||+++++.++++.|.++||+|+|++....+........++++..++.. ..+...+ ...+||+||+|
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~ 80 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAH 80 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEec
Confidence 899999999999999999999999987655443333445555443322 2234445 66899999999
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc--hhhcccCCCCCE
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYSAFDAGNY 300 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~--~~i~~~v~~~ki 300 (774)
++.. ..+..++. ...++|+|+++|+...... ...... ......+..+..++.+++++... .+...+++.+++
T Consensus 81 ~~~~-~~~~~~~~-~~~~~p~v~~~h~~~~~~~-~~~~~~---~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ri 154 (160)
T PF13579_consen 81 SPTA-GLVAALAR-RRRGIPLVVTVHGTLFRRG-SRWKRR---LYRWLERRLLRRADRVIVVSEAMRRYLRRYGVPPDRI 154 (160)
T ss_dssp HHHH-HHHHHHHH-HHHT--EEEE-SS-T-------HHHH---HHHHHHHHHHHH-SEEEESSHHHHHHHHHH---GGGE
T ss_pred ccch-hHHHHHHH-HccCCcEEEEECCCchhhc-cchhhH---HHHHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCCcE
Confidence 9654 34454443 2457999999997432211 111111 11123445777888887776662 222345667788
Q ss_pred EEeCC
Q 004092 301 YVIPG 305 (774)
Q Consensus 301 ~vIpg 305 (774)
.+|||
T Consensus 155 ~vipn 159 (160)
T PF13579_consen 155 HVIPN 159 (160)
T ss_dssp EE---
T ss_pred EEeCc
Confidence 88884
No 117
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.42 E-value=2.2e-05 Score=85.32 Aligned_cols=117 Identities=14% Similarity=0.140 Sum_probs=79.9
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEc
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~fl 411 (774)
+.+.+++++| -... . .++++++.+. + ..++++|....+ .... +|.+.
T Consensus 191 ~~~~iLv~~g-g~~~----~---~~~~~l~~~~----~-------~~~~v~g~~~~~-------------~~~~-ni~~~ 237 (318)
T PF13528_consen 191 DEPKILVYFG-GGGP----G---DLIEALKALP----D-------YQFIVFGPNAAD-------------PRPG-NIHVR 237 (318)
T ss_pred CCCEEEEEeC-CCcH----H---HHHHHHHhCC----C-------CeEEEEcCCccc-------------ccCC-CEEEe
Confidence 4566888888 3333 2 5567776644 3 688888832211 1133 79999
Q ss_pred cCc-ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccc------cccCccEEEEcC--CCHHHHH
Q 004092 412 AAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKY------VDDRVNGYLFPK--ENIKALT 482 (774)
Q Consensus 412 G~~-~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~Ei------V~dg~~G~Lv~~--~d~e~La 482 (774)
++. .++.++|++||++|...- -.+++||+++|+|+|.-+..+..|. +..-..|..++. -+++.|+
T Consensus 238 ~~~~~~~~~~m~~ad~vIs~~G------~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~ 311 (318)
T PF13528_consen 238 PFSTPDFAELMAAADLVISKGG------YTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLA 311 (318)
T ss_pred ecChHHHHHHHHhCCEEEECCC------HHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHH
Confidence 987 899999999999997752 2369999999999999887665443 333334656543 3578888
Q ss_pred HHHHH
Q 004092 483 HIILQ 487 (774)
Q Consensus 483 ~aI~~ 487 (774)
++|.+
T Consensus 312 ~~l~~ 316 (318)
T PF13528_consen 312 EFLER 316 (318)
T ss_pred HHHhc
Confidence 88765
No 118
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.41 E-value=8.1e-05 Score=81.64 Aligned_cols=278 Identities=13% Similarity=0.115 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccch---------------hHHHHhhhcCccEEEEc
Q 004092 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR---------------EKASFVNWLNYDGILVN 222 (774)
Q Consensus 158 G~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~---------------~l~~~i~~~~~DIIhvh 222 (774)
..-.....+++.|.+.||+|.|.+...+.....++..|++...+.... ++.++++..+||+++++
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~ 90 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISF 90 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEec
Confidence 355667789999999999999999888777778888888866554321 23344566899999877
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCC-CCEE
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDA-GNYY 301 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~-~ki~ 301 (774)
+......++.. .++|.|....+.... .. .+-.+..++.+..|...-......+.. .++.
T Consensus 91 ~s~~a~~va~~-----lgiP~I~f~D~e~a~-~~--------------~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~i~ 150 (335)
T PF04007_consen 91 GSPEAARVAFG-----LGIPSIVFNDTEHAI-AQ--------------NRLTLPLADVIITPEAIPKEFLKRFGAKNQIR 150 (335)
T ss_pred CcHHHHHHHHH-----hCCCeEEEecCchhh-cc--------------ceeehhcCCeeECCcccCHHHHHhcCCcCCEE
Confidence 65543234433 347988877742111 00 111223445555553221111111111 2343
Q ss_pred EeCCCCCCcccc-cccCchhhHHHHHHhCCCCCCEEEEEEec-ccccccccccHHHHHHHHHHchhhcccCCCCCCCeEE
Q 004092 302 VIPGSPAKAWEA-DTNMDLYNDTVRVKMGFKPDDLVIAIVGT-QFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKV 379 (774)
Q Consensus 302 vIpg~gvd~~~~-~~~~~~~k~~lR~~lgl~~~~~vIl~vGs-rl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~L 379 (774)
..+| ++...+ .++.+ ...+.+++|+++++.+++=... .-.+.+|-+ ..+-+.+..|.+. .+ . +
T Consensus 151 ~y~G--~~E~ayl~~F~P--d~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~--~i~~~ii~~L~~~-~~-------~-v 215 (335)
T PF04007_consen 151 TYNG--YKELAYLHPFKP--DPEVLKELGLDDEPYIVVRPEAWKASYDNGKK--SILPEIIEELEKY-GR-------N-V 215 (335)
T ss_pred EECC--eeeEEeecCCCC--ChhHHHHcCCCCCCEEEEEeccccCeeecCcc--chHHHHHHHHHhh-Cc-------e-E
Confidence 3443 332111 12222 3567789998877665554432 222332312 2234555555543 22 3 5
Q ss_pred EEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc
Q 004092 380 MILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (774)
Q Consensus 380 vIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g 458 (774)
+++. .... ..+.+.. .+.+....-+..+++..||++|.- -|....||..+|+|.|++..+
T Consensus 216 V~ipr~~~~-------~~~~~~~-----~~~i~~~~vd~~~Ll~~a~l~Ig~-------ggTMa~EAA~LGtPaIs~~~g 276 (335)
T PF04007_consen 216 VIIPRYEDQ-------RELFEKY-----GVIIPPEPVDGLDLLYYADLVIGG-------GGTMAREAALLGTPAISCFPG 276 (335)
T ss_pred EEecCCcch-------hhHHhcc-----CccccCCCCCHHHHHHhcCEEEeC-------CcHHHHHHHHhCCCEEEecCC
Confidence 5555 2221 1222321 144444344677899999999954 356778999999999997543
Q ss_pred ---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 459 ---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 459 ---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+..+++.+ .|+++...|++++.+.+...+..
T Consensus 277 ~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 277 KLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred cchhHHHHHHH--CCCeEecCCHHHHHHHHHHhhhc
Confidence 33345544 48899989999998866655443
No 119
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.30 E-value=3.4e-05 Score=85.75 Aligned_cols=299 Identities=14% Similarity=0.129 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEcCCCcchh----------hhhhcCcc--EEEc----ccchhHHHHhhhcCccEEEEc
Q 004092 159 QQLQMVTIAIALREIGYAIQVYSLEDGRAHE----------VWRNIGVP--VAIL----QTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 159 ~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~----------~~~~~gi~--i~~l----~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+...|+++|+++.-++.++..++..... .+..+|+- +..+ ...+.+...+...+||+++.-
T Consensus 10 GD~~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlI 89 (373)
T PF02684_consen 10 GDLHGARLIRALKARDPDIEFYGVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILI 89 (373)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3567889999999998888888776543221 11112211 0001 111233344566899988865
Q ss_pred C-CchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHH--hhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCC
Q 004092 223 S-LEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARN--YASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGN 299 (774)
Q Consensus 223 s-~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k--~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~k 299 (774)
. |....-++..+.+...++|+|+.+--.-+.++..+ ...+..|.++ ..||=..-.....+ -+
T Consensus 90 D~pgFNlrlak~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~~D~ll------------~ifPFE~~~y~~~g---~~ 154 (373)
T PF02684_consen 90 DYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKYVDHLL------------VIFPFEPEFYKKHG---VP 154 (373)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEECCceeeeCccHHHHHHHHHhhee------------ECCcccHHHHhccC---CC
Confidence 4 44433444444333333347776652222211111 1111122221 12221110000111 12
Q ss_pred EEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCE-EEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeE
Q 004092 300 YYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDL-VIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIK 378 (774)
Q Consensus 300 i~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~-vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~ 378 (774)
..++- .|.-. ...........++.+ ++++++ +.+..|||-..- -+.+..+++++..+.+++|+ ++
T Consensus 155 ~~~VG-HPl~d---~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI--~rllP~~l~aa~~l~~~~p~-------l~ 220 (373)
T PF02684_consen 155 VTYVG-HPLLD---EVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEI--KRLLPIFLEAAKLLKKQRPD-------LQ 220 (373)
T ss_pred eEEEC-Ccchh---hhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHH--HHHHHHHHHHHHHHHHhCCC-------eE
Confidence 23332 22211 011111134455566 666555 667778876653 14558889999999999998 99
Q ss_pred EEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC-C
Q 004092 379 VMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD-L 457 (774)
Q Consensus 379 LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd-~ 457 (774)
+++..-+.. +.+.+++.....+... .+... ..+-.+.|++||+.+..| |.+.+||+.+|+|.|... .
T Consensus 221 fvvp~a~~~--~~~~i~~~~~~~~~~~-~~~~~--~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 221 FVVPVAPEV--HEELIEEILAEYPPDV-SIVII--EGESYDAMAAADAALAAS-------GTATLEAALLGVPMVVAYKV 288 (373)
T ss_pred EEEecCCHH--HHHHHHHHHHhhCCCC-eEEEc--CCchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEEEcC
Confidence 998873321 1234555555444433 23322 347788999999999887 778999999999987632 2
Q ss_pred c----------------ccccccccCcc--EEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 004092 458 S----------------NIRKYVDDRVN--GYLFPKENIKALTHIILQVITNGKISPFARNI 501 (774)
Q Consensus 458 g----------------gi~EiV~dg~~--G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m 501 (774)
. +++.++.+... =++-+..+++.+++++..++.| ++.++..
T Consensus 289 ~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~ 347 (373)
T PF02684_consen 289 SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQ 347 (373)
T ss_pred cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHH
Confidence 2 33444433220 0122235799999999999999 7664443
No 120
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=4.6e-05 Score=83.25 Aligned_cols=315 Identities=14% Similarity=0.127 Sum_probs=171.5
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch----------hhhhhcCcc------EEEcccchhHH
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH----------EVWRNIGVP------VAILQTGREKA 208 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~----------~~~~~~gi~------i~~l~~~~~l~ 208 (774)
++|+++.+..+. ..+-..|.++|+++=-++.++-.++.... ..+..+|+. ...+...+++.
T Consensus 2 ~ki~i~AGE~SG---DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~ 78 (381)
T COG0763 2 LKIALSAGEASG---DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELV 78 (381)
T ss_pred ceEEEEecccch---hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 567777665432 34556778888876337777766542211 111222221 01111223334
Q ss_pred HHhhhcCccEEEEc-CCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHH--hhhhhhhHHHHHHHHHHHhccEEEccC
Q 004092 209 SFVNWLNYDGILVN-SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARN--YASSGQLELLNDWKKVFNRATVVVFPD 285 (774)
Q Consensus 209 ~~i~~~~~DIIhvh-s~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k--~~~~~~~~li~~~~~~~~~a~~vv~ps 285 (774)
+.+...+||++++- +|...-.+...+.+...++|+|+.+--..+.++..+ ...+..|.++. .+|=
T Consensus 79 ~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLa------------ilPF 146 (381)
T COG0763 79 RYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLA------------ILPF 146 (381)
T ss_pred HHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceeeechhhHHHHHHHhhHeee------------ecCC
Confidence 44556899988765 454443444445444456888876663333322211 11112222211 2221
Q ss_pred CcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCC-EEEEEEecccccccccccHHHHHHHHHHch
Q 004092 286 YVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDD-LVIAIVGTQFMYRGLWLEHALILRALLPLF 364 (774)
Q Consensus 286 ~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~-~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~ 364 (774)
..- .|...... ..++-..-.|. .+ -...++..|++++++.+. .+.+..|||-+.- -.....+++|+..+.
T Consensus 147 E~~--~y~k~g~~-~~yVGHpl~d~---i~-~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI--~rl~~~f~~a~~~l~ 217 (381)
T COG0763 147 EPA--FYDKFGLP-CTYVGHPLADE---IP-LLPDREAAREKLGIDADEKTLALLPGSRRSEI--RRLLPPFVQAAQELK 217 (381)
T ss_pred CHH--HHHhcCCC-eEEeCChhhhh---cc-ccccHHHHHHHhCCCCCCCeEEEecCCcHHHH--HHHHHHHHHHHHHHH
Confidence 111 11111111 22222111111 11 122356689999998765 5667778776552 155677889999999
Q ss_pred hhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHH
Q 004092 365 SEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (774)
Q Consensus 365 ~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~ll 443 (774)
+++|+ +++++-- .+. |+....+..+...... .+.+.+ .+-.+.+.+||+.+..| |.+.+
T Consensus 218 ~~~~~-------~~~vlp~~~~~---~~~~~~~~~~~~~~~~-~~~~~~--~~~~~a~~~aD~al~aS-------GT~tL 277 (381)
T COG0763 218 ARYPD-------LKFVLPLVNAK---YRRIIEEALKWEVAGL-SLILID--GEKRKAFAAADAALAAS-------GTATL 277 (381)
T ss_pred hhCCC-------ceEEEecCcHH---HHHHHHHHhhccccCc-eEEecC--chHHHHHHHhhHHHHhc-------cHHHH
Confidence 99998 8998877 333 2233333333222212 233332 36678999999999877 77999
Q ss_pred HHHHcCCCEEEcC-----------------CcccccccccCccEEEEc-----CCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 004092 444 KALCFRKPIIAPD-----------------LSNIRKYVDDRVNGYLFP-----KENIKALTHIILQVITNGKISPFARNI 501 (774)
Q Consensus 444 EAMA~G~PVIatd-----------------~ggi~EiV~dg~~G~Lv~-----~~d~e~La~aI~~Ll~d~~~~~~r~~m 501 (774)
|+|.+|+|.|++. +-+.+.++.+.. ++| .-.++.+++++..++.| +..++++
T Consensus 278 E~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~---ivPEliq~~~~pe~la~~l~~ll~~---~~~~~~~ 351 (381)
T COG0763 278 EAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGRE---IVPELIQEDCTPENLARALEELLLN---GDRREAL 351 (381)
T ss_pred HHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCc---cchHHHhhhcCHHHHHHHHHHHhcC---hHhHHHH
Confidence 9999999987642 223444444322 222 23589999999999999 6566666
Q ss_pred HHHHHHHH
Q 004092 502 ASIGRRSV 509 (774)
Q Consensus 502 ~~~ar~~a 509 (774)
.+...+..
T Consensus 352 ~~~~~~l~ 359 (381)
T COG0763 352 KEKFRELH 359 (381)
T ss_pred HHHHHHHH
Confidence 55544444
No 121
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.27 E-value=2e-05 Score=74.78 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=67.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc----------hhHHHHhhhcC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG----------REKASFVNWLN 215 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~----------~~l~~~i~~~~ 215 (774)
||+++.... +.++.++++.|.+.||+|++++..++. .......++.+..++.. ..+.++++..+
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~-~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~ 74 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDY-EKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEK 74 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCc-hhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCC
Confidence 355555544 457899999999999999999996543 22222344444444311 13455677889
Q ss_pred ccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCch
Q 004092 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT 251 (774)
Q Consensus 216 ~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~ 251 (774)
||+||+|.+.....++.++......+|+|++.||..
T Consensus 75 ~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~ 110 (139)
T PF13477_consen 75 PDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSD 110 (139)
T ss_pred CCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCe
Confidence 999999998764466666654333489999999854
No 122
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=0.00036 Score=76.60 Aligned_cols=322 Identities=12% Similarity=0.101 Sum_probs=182.5
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcC-CeEEEEEcCC-C--cc-hhhhhhcCcc--EEEcccc------------
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIG-YAIQVYSLED-G--RA-HEVWRNIGVP--VAILQTG------------ 204 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G-~eV~V~t~~~-~--~~-~~~~~~~gi~--i~~l~~~------------ 204 (774)
+.||+.|++. -.--.-+..+.+++.+.+ .+..|+..+. - +. ...++..+++ .+.+...
T Consensus 3 ~~Kv~~I~GT---RPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~ 79 (383)
T COG0381 3 MLKVLTIFGT---RPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN 79 (383)
T ss_pred ceEEEEEEec---CHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence 5678888773 344456777888998887 7777766543 1 21 1233444443 2222211
Q ss_pred --hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchh--hhhHHHhhhhhhhHHHHHHHHHHHhccE
Q 004092 205 --REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL--ATRARNYASSGQLELLNDWKKVFNRATV 280 (774)
Q Consensus 205 --~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l--~~~~~k~~~~~~~~li~~~~~~~~~a~~ 280 (774)
..+.+++...+||+|.+|.-....+...+.+ ...++|+...-=|.-. .+.-+.......+. ++ .
T Consensus 80 ~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa-~~~~IpV~HvEAGlRt~~~~~PEE~NR~l~~~-~S----------~ 147 (383)
T COG0381 80 IIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAA-FYLKIPVGHVEAGLRTGDLYFPEEINRRLTSH-LS----------D 147 (383)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHH-HHhCCceEEEecccccCCCCCcHHHHHHHHHH-hh----------h
Confidence 1245557779999999999877433334443 3567887654433111 11112222221111 11 1
Q ss_pred EEc-cCCc--chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHH-hCCCCCCEEEEEEecccccccccccHHHH
Q 004092 281 VVF-PDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVK-MGFKPDDLVIAIVGTQFMYRGLWLEHALI 356 (774)
Q Consensus 281 vv~-ps~~--~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~-lgl~~~~~vIl~vGsrl~~~KgiKg~~lL 356 (774)
+.| |+.. --....+++.++++++-+.-+|.................. ++...++.+++..-++-... +++..+
T Consensus 148 ~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~---~~~~~i 224 (383)
T COG0381 148 LHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVG---EPLEEI 224 (383)
T ss_pred hhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhccc---ccHHHH
Confidence 111 1111 1223446666778777654444422110001101111222 44455555555555333333 888888
Q ss_pred HHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHH-HHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCcc
Q 004092 357 LRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIA-HNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL 433 (774)
Q Consensus 357 LeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la-~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~ 433 (774)
++|+.++.+++++ +.++.---+. ..+++.. ..++-.+ +|.++... .+...++..|-+++.=|
T Consensus 225 ~~al~~i~~~~~~-------~~viyp~H~~-----~~v~e~~~~~L~~~~-~v~li~pl~~~~f~~L~~~a~~iltDS-- 289 (383)
T COG0381 225 CEALREIAEEYPD-------VIVIYPVHPR-----PRVRELVLKRLKNVE-RVKLIDPLGYLDFHNLMKNAFLILTDS-- 289 (383)
T ss_pred HHHHHHHHHhCCC-------ceEEEeCCCC-----hhhhHHHHHHhCCCC-cEEEeCCcchHHHHHHHHhceEEEecC--
Confidence 9999999999877 5555444222 2233444 4445444 68888766 67788888887777655
Q ss_pred CcCCccHHHHHHHHcCCCEEEcCC-cccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 004092 434 EEQTFPEILVKALCFRKPIIAPDL-SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRS 508 (774)
Q Consensus 434 E~qGfp~~llEAMA~G~PVIatd~-ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ 508 (774)
|...=||-.+|+||++-.. ..-+|-++.|. -.++.. +.+.+.+++..++++ ++..++|+....-+
T Consensus 290 -----GgiqEEAp~lg~Pvl~lR~~TERPE~v~agt-~~lvg~-~~~~i~~~~~~ll~~---~~~~~~m~~~~npY 355 (383)
T COG0381 290 -----GGIQEEAPSLGKPVLVLRDTTERPEGVEAGT-NILVGT-DEENILDAATELLED---EEFYERMSNAKNPY 355 (383)
T ss_pred -----CchhhhHHhcCCcEEeeccCCCCccceecCc-eEEeCc-cHHHHHHHHHHHhhC---hHHHHHHhcccCCC
Confidence 3344499999999988544 34567666554 456654 679999999999999 88888886654333
No 123
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.21 E-value=0.00026 Score=82.32 Aligned_cols=314 Identities=10% Similarity=0.050 Sum_probs=165.5
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchh----------hhhhcCccEEEcc-------cchh
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE----------VWRNIGVPVAILQ-------TGRE 206 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~----------~~~~~gi~i~~l~-------~~~~ 206 (774)
.+++.++.+..+ +..+.-.|+++|+++.-++.+...++..... .....|+- ..++ ..++
T Consensus 226 ~~kIfI~AGE~S---GDlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~-EVL~~l~~l~~~~~~ 301 (608)
T PRK01021 226 NTSCFISAGEHS---GDTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFW-EVLLALFKLWYRYRK 301 (608)
T ss_pred CCeEEEEecccc---HHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhHH-HHHHHHHHHHHHHHH
Confidence 467777776543 3467778899999987788877665533221 11111111 1111 1123
Q ss_pred HHHHhhhcCccEEEE-cCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHH--HhhhhhhhHHHHHHHHHHHhccEEEc
Q 004092 207 KASFVNWLNYDGILV-NSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRAR--NYASSGQLELLNDWKKVFNRATVVVF 283 (774)
Q Consensus 207 l~~~i~~~~~DIIhv-hs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~--k~~~~~~~~li~~~~~~~~~a~~vv~ 283 (774)
+.+.+...+||++++ .+|...--++..+.+...++|+|+.+--.-..++.. +...+..|.+++ .+
T Consensus 302 l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAWR~~Rikki~k~vD~ll~------------If 369 (608)
T PRK01021 302 LYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAWRPKRKTILEKYLDLLLL------------IL 369 (608)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceeeCcchHHHHHHHhhhhee------------cC
Confidence 334455689999887 455554334444433211248887665322222111 111122222222 12
Q ss_pred cCCcchhhcccCCCCCEEEeCCCCC-CcccccccCchhhHHHHHHhCCCCC-CEEEEEEeccccc-ccccccHHHHHHHH
Q 004092 284 PDYVLPMMYSAFDAGNYYVIPGSPA-KAWEADTNMDLYNDTVRVKMGFKPD-DLVIAIVGTQFMY-RGLWLEHALILRAL 360 (774)
Q Consensus 284 ps~~~~~i~~~v~~~ki~vIpg~gv-d~~~~~~~~~~~k~~lR~~lgl~~~-~~vIl~vGsrl~~-~KgiKg~~lLLeA~ 360 (774)
|=+.-.....+ -++..+- .|. |. ......++..++++|++++ ..+.+..|||... . ...+.+++|+
T Consensus 370 PFE~~~y~~~g---v~v~yVG-HPL~d~----i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~---rllPv~l~aa 438 (608)
T PRK01021 370 PFEQNLFKDSP---LRTVYLG-HPLVET----ISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDIL---RNLTIQVQAF 438 (608)
T ss_pred ccCHHHHHhcC---CCeEEEC-CcHHhh----cccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHH---HHHHHHHHHH
Confidence 21110000111 1222222 222 21 0011224567888999755 5566888988655 4 5667788888
Q ss_pred H--HchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCc
Q 004092 361 L--PLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTF 438 (774)
Q Consensus 361 ~--~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGf 438 (774)
. .+.+ + .++++...+.. +.+.+++..+..++.. +.+... ++-.+++++||+.+..|
T Consensus 439 ~~~~l~~---~-------l~fvvp~a~~~--~~~~i~~~~~~~~~~~--~~ii~~-~~~~~~m~aaD~aLaaS------- 496 (608)
T PRK01021 439 LASSLAS---T-------HQLLVSSANPK--YDHLILEVLQQEGCLH--SHIVPS-QFRYELMRECDCALAKC------- 496 (608)
T ss_pred HHHHhcc---C-------eEEEEecCchh--hHHHHHHHHhhcCCCC--eEEecC-cchHHHHHhcCeeeecC-------
Confidence 7 4433 2 67777553221 2355666665333212 333321 13479999999999887
Q ss_pred cHHHHHHHHcCCCEEEc-CCc------------------ccccccccCc-cEEEE---cCCCHHHHHHHHHHHHHcCCCc
Q 004092 439 PEILVKALCFRKPIIAP-DLS------------------NIRKYVDDRV-NGYLF---PKENIKALTHIILQVITNGKIS 495 (774)
Q Consensus 439 p~~llEAMA~G~PVIat-d~g------------------gi~EiV~dg~-~G~Lv---~~~d~e~La~aI~~Ll~d~~~~ 495 (774)
|.+.+||+.+|+|.|.. ..+ +.+.++.+.+ ---+. +.-+++.+++++ +++.| +
T Consensus 497 GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d---~ 572 (608)
T PRK01021 497 GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKT---S 572 (608)
T ss_pred CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcC---H
Confidence 77899999999998763 222 2222332221 00122 234799999996 88888 7
Q ss_pred HHHHHHHHHHHHHHH
Q 004092 496 PFARNIASIGRRSVK 510 (774)
Q Consensus 496 ~~r~~m~~~ar~~ak 510 (774)
+.++++.+...+..+
T Consensus 573 ~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 573 QSKEKQKDACRDLYQ 587 (608)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776665554443
No 124
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.04 E-value=0.0082 Score=70.00 Aligned_cols=163 Identities=14% Similarity=0.122 Sum_probs=98.5
Q ss_pred CCCEEEEEEecccccccc-cccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeC-CCCCchHHHHHHHHHHcCCCCccEE
Q 004092 332 PDDLVIAIVGTQFMYRGL-WLEHALILRALLPLFSEVSVENESNSPIKVMILSG-DSTSNYSVVIEAIAHNLHYPLGVVK 409 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~Kg-iKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG-~~~e~Y~~~L~~la~~lgL~~~~V~ 409 (774)
++..+++.+|+.....+. -.-...+++|++.+. .++++..+ ...+ .++++ +|.
T Consensus 295 ~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~------------~~viw~~~~~~~~------------~~~p~-Nv~ 349 (507)
T PHA03392 295 TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLP------------YNVLWKYDGEVEA------------INLPA-NVL 349 (507)
T ss_pred CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCC------------CeEEEEECCCcCc------------ccCCC-ceE
Confidence 345788888864332101 033455666766554 35555443 2220 14666 899
Q ss_pred EccCcccHHHHH--HHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC--CHHHH
Q 004092 410 HMAAEGDVDSVL--NTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKAL 481 (774)
Q Consensus 410 flG~~~dl~~~l--~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~--d~e~L 481 (774)
+.++..+ .+++ ..+++||.- |-.+++.||+.+|+|+|+-+..+ ....+.....|...+.. +.+++
T Consensus 350 i~~w~Pq-~~lL~hp~v~~fItH------GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l 422 (507)
T PHA03392 350 TQKWFPQ-RAVLKHKNVKAFVTQ------GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQL 422 (507)
T ss_pred EecCCCH-HHHhcCCCCCEEEec------CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHH
Confidence 9998743 5677 458888853 34668899999999999976543 23334344458777653 67899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhcCC
Q 004092 482 THIILQVITNGKISPFARNIASIGRRSVK-NLMALETIEGYAMLLENVLKLP 532 (774)
Q Consensus 482 a~aI~~Ll~d~~~~~~r~~m~~~ar~~ak-~fs~~~~a~~y~~L~e~ll~~~ 532 (774)
.++|.++++| +..+++..+-+..... ..+..+.+-.| ++.+++.+
T Consensus 423 ~~ai~~vl~~---~~y~~~a~~ls~~~~~~p~~~~~~av~~---iE~v~r~~ 468 (507)
T PHA03392 423 VLAIVDVIEN---PKYRKNLKELRHLIRHQPMTPLHKAIWY---TEHVIRNK 468 (507)
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHhCC
Confidence 9999999999 7766655554444442 23343333333 34455444
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.99 E-value=8.9e-05 Score=82.11 Aligned_cols=253 Identities=16% Similarity=0.157 Sum_probs=131.7
Q ss_pred HHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhh-hhHHHhhhhhhhHHHHHHHHHHHhccEE
Q 004092 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLA-TRARNYASSGQLELLNDWKKVFNRATVV 281 (774)
Q Consensus 207 l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~-~~~~k~~~~~~~~li~~~~~~~~~a~~v 281 (774)
+...+...+||+|+++.-... .++..+.....++| |.++|+. ... ...+.. .+........+
T Consensus 59 ~~~~~~~~~Pd~Vlv~GD~~~-~la~alaA~~~~ip-v~HieaGlRs~d~~~g~~de~-----------~R~~i~~la~l 125 (346)
T PF02350_consen 59 LADVLEREKPDAVLVLGDRNE-ALAAALAAFYLNIP-VAHIEAGLRSGDRTEGMPDEI-----------NRHAIDKLAHL 125 (346)
T ss_dssp HHHHHHHHT-SEEEEETTSHH-HHHHHHHHHHTT-E-EEEES-----S-TTSSTTHHH-----------HHHHHHHH-SE
T ss_pred HHHHHHhcCCCEEEEEcCCch-HHHHHHHHHHhCCC-EEEecCCCCccccCCCCchhh-----------hhhhhhhhhhh
Confidence 455577799999999998874 44433333467799 5667763 111 011111 22222222223
Q ss_pred EccCCc---chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHH-HHHh-CCCCCCEEEEEEecccccccccccHHHH
Q 004092 282 VFPDYV---LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTV-RVKM-GFKPDDLVIAIVGTQFMYRGLWLEHALI 356 (774)
Q Consensus 282 v~ps~~---~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~l-R~~l-gl~~~~~vIl~vGsrl~~~KgiKg~~lL 356 (774)
.|+... ...+..+.+..+++++-+..+|.... ..+...... ...+ ...+++ ++++..-+............+
T Consensus 126 hf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~--~~~~~~~~~~~~~i~~~~~~~-~iLvt~H~~t~~~~~~~~~~i 202 (346)
T PF02350_consen 126 HFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQ--NKEEIEEKYKNSGILQDAPKP-YILVTLHPVTNEDNPERLEQI 202 (346)
T ss_dssp EEESSHHHHHHHHHTT--GGGEEE---HHHHHHHH--HHHTTCC-HHHHHHHHCTTSE-EEEEE-S-CCCCTHH--HHHH
T ss_pred hccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHH--hHHHHhhhhhhHHHHhccCCC-EEEEEeCcchhcCChHHHHHH
Confidence 333222 33455677778888886545554210 000001111 1111 113444 444444244332112446677
Q ss_pred HHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccC
Q 004092 357 LRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLE 434 (774)
Q Consensus 357 LeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E 434 (774)
.++++.+.+. ++ +.+++...+.. .....+.+..+ .+ + +|.+.... .+...+++.|+++|.-|
T Consensus 203 ~~~l~~L~~~-~~-------~~vi~~~hn~p-~~~~~i~~~l~--~~-~-~v~~~~~l~~~~~l~ll~~a~~vvgdS--- 266 (346)
T PF02350_consen 203 LEALKALAER-QN-------VPVIFPLHNNP-RGSDIIIEKLK--KY-D-NVRLIEPLGYEEYLSLLKNADLVVGDS--- 266 (346)
T ss_dssp HHHHHHHHHH-TT-------EEEEEE--S-H-HHHHHHHHHHT--T--T-TEEEE----HHHHHHHHHHESEEEESS---
T ss_pred HHHHHHHHhc-CC-------CcEEEEecCCc-hHHHHHHHHhc--cc-C-CEEEECCCCHHHHHHHHhcceEEEEcC---
Confidence 8888888776 55 78888874321 23345555555 33 3 68888766 78899999999998655
Q ss_pred cCCccHHHH-HHHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 004092 435 EQTFPEILV-KALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNI 501 (774)
Q Consensus 435 ~qGfp~~ll-EAMA~G~PVIat-d~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m 501 (774)
| .+. ||.++|+|||.- +.+.-++.+..+.+ .++. .|.+++.++|.+++.+ .+...++
T Consensus 267 ----s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~n-vlv~-~~~~~I~~ai~~~l~~---~~~~~~~ 325 (346)
T PF02350_consen 267 ----S-GIQEEAPSLGKPVVNIRDSGERQEGRERGSN-VLVG-TDPEAIIQAIEKALSD---KDFYRKL 325 (346)
T ss_dssp ----H-HHHHHGGGGT--EEECSSS-S-HHHHHTTSE-EEET-SSHHHHHHHHHHHHH----HHHHHHH
T ss_pred ----c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcce-EEeC-CCHHHHHHHHHHHHhC---hHHHHhh
Confidence 4 455 999999999997 44555677766664 4576 6899999999999987 5555544
No 126
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00065 Score=71.15 Aligned_cols=293 Identities=15% Similarity=0.103 Sum_probs=155.3
Q ss_pred eEEEEecCC-CCC-hHHHHHHHHHHHHHHcCCeEEEEEcCCCc--chhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 146 QLALVFPDL-LID-PQQLQMVTIAIALREIGYAIQVYSLEDGR--AHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 146 rialV~~~L-~~G-G~e~~v~~Lak~L~~~G~eV~V~t~~~~~--~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
+|+++.... ..| |.-..+..||+.|.+.|..+..++..+.+ ....++...+..... ...++..++|++++
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~~~------~n~ik~~k~d~lI~ 75 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEGRG------NNLIKEEKFDLLIF 75 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceeeec------ccccccccCCEEEE
Confidence 566665544 444 66678999999999999888888766522 122344433322111 11567889999999
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEE
Q 004092 222 NSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYY 301 (774)
Q Consensus 222 hs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~ 301 (774)
.+.....-...++.. ..+.|+++.-.. ...... + .+.++.... ...+.+... +.+..
T Consensus 76 Dsygl~~dd~k~ik~-e~~~k~l~fDd~--~~~~~~-d----~d~ivN~~~---~a~~~y~~v------------~~k~~ 132 (318)
T COG3980 76 DSYGLNADDFKLIKE-EAGSKILIFDDE--NAKSFK-D----NDLIVNAIL---NANDYYGLV------------PNKTR 132 (318)
T ss_pred eccCCCHHHHHHHHH-HhCCcEEEecCC--Cccchh-h----hHhhhhhhh---cchhhcccc------------CcceE
Confidence 988765555555531 233565543221 111010 1 122221111 111111111 22332
Q ss_pred EeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEE
Q 004092 302 VIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMI 381 (774)
Q Consensus 302 vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvI 381 (774)
+.-|.+.-+-..++ ...|++.-..+..-+++..| -..+ |++ .++.++.|.+.. +.+.|
T Consensus 133 ~~lGp~y~~lr~eF------~~~r~~~~~r~~r~ilI~lG-GsDp----k~l--t~kvl~~L~~~~---------~nl~i 190 (318)
T COG3980 133 YYLGPGYAPLRPEF------YALREENTERPKRDILITLG-GSDP----KNL--TLKVLAELEQKN---------VNLHI 190 (318)
T ss_pred EEecCCceeccHHH------HHhHHHHhhcchheEEEEcc-CCCh----hhh--HHHHHHHhhccC---------eeEEE
Confidence 33221111100011 12233322223333677777 3445 443 577777776653 34444
Q ss_pred EeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCE--EE--cCC
Q 004092 382 LSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPI--IA--PDL 457 (774)
Q Consensus 382 vGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PV--Ia--td~ 457 (774)
|-|...+. ...+++.++ ..+ ++.++-..+++.+++..||+.+.. -|.++.||...|+|. |+ .+.
T Consensus 191 V~gs~~p~-l~~l~k~~~---~~~-~i~~~~~~~dma~LMke~d~aI~A-------aGstlyEa~~lgvP~l~l~~a~NQ 258 (318)
T COG3980 191 VVGSSNPT-LKNLRKRAE---KYP-NINLYIDTNDMAELMKEADLAISA-------AGSTLYEALLLGVPSLVLPLAENQ 258 (318)
T ss_pred EecCCCcc-hhHHHHHHh---hCC-CeeeEecchhHHHHHHhcchheec-------cchHHHHHHHhcCCceEEeeeccH
Confidence 44321111 144555555 233 588888888999999999999854 378999999999993 32 222
Q ss_pred cccccccccCccEEEEcC---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 004092 458 SNIRKYVDDRVNGYLFPK---ENIKALTHIILQVITNGKISPFARNIASIGR 506 (774)
Q Consensus 458 ggi~EiV~dg~~G~Lv~~---~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar 506 (774)
-......+. -|+.... -...+....+.++.+| ..++..+....+
T Consensus 259 ~~~a~~f~~--lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l~~~~~ 305 (318)
T COG3980 259 IATAKEFEA--LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNLSFGSK 305 (318)
T ss_pred HHHHHHHHh--cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhhhhccc
Confidence 222222221 2322222 2456778888999999 888776655443
No 127
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.98 E-value=0.00055 Score=77.51 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=86.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
.++++..|..+..+. ++++ ++...++. ....++..||++|... --+++.||+.+|+|+|+-+
T Consensus 266 ~~vi~~~~~~~~~~~----------~~p~-n~~v~~~~-p~~~~l~~ad~vI~hG------G~gtt~eaL~~gvP~vv~P 327 (406)
T COG1819 266 VRVIVSLGGARDTLV----------NVPD-NVIVADYV-PQLELLPRADAVIHHG------GAGTTSEALYAGVPLVVIP 327 (406)
T ss_pred cEEEEeccccccccc----------cCCC-ceEEecCC-CHHHHhhhcCEEEecC------CcchHHHHHHcCCCEEEec
Confidence 577777744332222 7777 89999888 4445999999999875 3457899999999999866
Q ss_pred Ccc----cccccccCccEEEEc--CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004092 457 LSN----IRKYVDDRVNGYLFP--KENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLL 525 (774)
Q Consensus 457 ~gg----i~EiV~dg~~G~Lv~--~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~ 525 (774)
.+. ..+.+++-..|...+ .-+++.++++|.++++| +..+++..+......+.-...++++...+++
T Consensus 328 ~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~ 399 (406)
T COG1819 328 DGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD---DSYRRAAERLAEEFKEEDGPAKAADLLEEFA 399 (406)
T ss_pred CCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 552 234555656687777 47899999999999999 6666555444433334444444444444333
No 128
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=0.0017 Score=70.85 Aligned_cols=326 Identities=14% Similarity=0.058 Sum_probs=176.9
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCCCc---chhhhhhcCcc--EEEcccchhHHHHhhhcCccEEEEcCCc----h
Q 004092 156 IDPQQLQMVTIAIALREIGYAIQVYSLEDGR---AHEVWRNIGVP--VAILQTGREKASFVNWLNYDGILVNSLE----A 226 (774)
Q Consensus 156 ~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~---~~~~~~~~gi~--i~~l~~~~~l~~~i~~~~~DIIhvhs~~----~ 226 (774)
.+|......-+.+.|...||++..+-..+.- ....+...+-. ++.-.........++..++|+|.+.... .
T Consensus 13 ~~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~~~~~ 92 (373)
T COG4641 13 NNGSAEYYRGLLRALKMDGMKVLFLESGDFWDYKNRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDDQPDE 92 (373)
T ss_pred cCCchhhHHHHHHHHHhccceEEEEecccHHhhhcccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEecccccccc
Confidence 5666677788999999999999998876521 11111111111 1111111223345677899999876543 0
Q ss_pred hHHHHHHHhCCCCCCCEEEEEcCchhhh-----hHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc--hhhcccCCCCC
Q 004092 227 KVVISNIMQEPFKSLPLVWTIHEGTLAT-----RARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYSAFDAGN 299 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~tiHg~~l~~-----~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~--~~i~~~v~~~k 299 (774)
-.....+......++|+++..-+.+... ..+...... ....+.. +..-.... ...+......+
T Consensus 93 ~~~~~~~a~l~~~~l~~~~w~te~p~~~~~~~~~~~~~~~~~---~l~~fd~-------v~~~g~~l~~~~yyq~~~~~~ 162 (373)
T COG4641 93 ESTIDLWAWLKRKCLPVIVWYTEDPYDTDIFSQVAEEQLARR---PLFIFDN-------VLSFGGGLVANKYYQEGGARN 162 (373)
T ss_pred eehHHHHHHhhcCCcceEEEEeccchhhhhhhhhhHHHhhcc---ccchhhh-------hhhccchHHHHHHHHhhcccc
Confidence 0011112222345678665555433210 001111000 0000000 00000000 01111222334
Q ss_pred EEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEE
Q 004092 300 YYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKV 379 (774)
Q Consensus 300 i~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~L 379 (774)
.+.++ .++|...+.+.++. ..-..-+.++| ...+ .. .+.++++..+ |.. ..-.+-++
T Consensus 163 ~~~~~-~a~d~~~~~~i~~d-----------a~~~~dL~~ig-n~~p----Dr----~e~~ke~~~~-ps~-kl~v~rr~ 219 (373)
T COG4641 163 CYYLP-WAVDDSLFHPIPPD-----------ASYDVDLNLIG-NPYP----DR----VEEIKEFFVE-PSF-KLMVDRRF 219 (373)
T ss_pred eeccC-ccCCchhcccCCcc-----------ccceeeeEEec-CCCc----cH----HHHHHHHhhc-cch-hhhcccee
Confidence 45555 57776555554432 11223577888 3333 22 4444443321 110 00000233
Q ss_pred EEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc---ccHHHHHHHcCEEEEcCc--cCcCCc--cHHHHHHHHcCCCE
Q 004092 380 MILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE---GDVDSVLNTADVVIYGSF--LEEQTF--PEILVKALCFRKPI 452 (774)
Q Consensus 380 vIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~---~dl~~~l~aaDI~V~PS~--~E~qGf--p~~llEAMA~G~PV 452 (774)
...| +. |-..+ ... .-.+ ++...|+. ..+..++...|+++.-+. .+..++ .+-+.|+|+||.|.
T Consensus 220 ~~~g-~~---y~~~~---~~~-~~~~-~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~l 290 (373)
T COG4641 220 YVLG-PR---YPDDI---WGR-TWEP-NVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFL 290 (373)
T ss_pred eecC-Cc---cchhh---hcc-cccc-hhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCcc
Confidence 4444 22 11111 111 1112 45555543 578889999999876442 222133 88999999999999
Q ss_pred EEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 004092 453 IAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLENV 528 (774)
Q Consensus 453 Iatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~l 528 (774)
|+....++...+.+|+.=++ ..|.+++.+++..++.. ++.++++++.|++.+ ..|+-+.-+..+...+..+
T Consensus 291 iT~~~~~~e~~f~pgk~~iv--~~d~kdl~~~~~yll~h---~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI 362 (373)
T COG4641 291 ITDYWKDLEKFFKPGKDIIV--YQDSKDLKEKLKYLLNH---PDERKEIAECAYERVLARHTYEERIFKLLNEIASI 362 (373)
T ss_pred ccccHHHHHHhcCCchheEE--ecCHHHHHHHHHHHhcC---cchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999885333 35899999999999999 999999999999999 5688888887777777764
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.93 E-value=0.0032 Score=67.37 Aligned_cols=272 Identities=13% Similarity=0.168 Sum_probs=157.0
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHH-HHHhccEEEccCCcchh--
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK-VFNRATVVVFPDYVLPM-- 290 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~-~~~~a~~vv~ps~~~~~-- 290 (774)
.+.+-+++|+......+..++..+..-.++.|.+-|..++... .....+++...+. +..+...+......+..
T Consensus 38 ~r~~rff~HGqFn~~lwlall~g~~~~~q~yWhiWGaDLYe~~----~~lk~rlfy~lRR~aq~rvg~v~atrGD~~~~a 113 (322)
T PRK02797 38 NRAQRFFLHGQFNPTLWLALLSGKIKPKQFYWHIWGADLYEES----KGLKFRLFYPLRRLAQKRVGHVFATRGDLSYFA 113 (322)
T ss_pred CccceEEEecCCCHHHHHHHHhCCcCccceEEEEEChhhhhcc----cchhHHHHHHHHHHHHhhcCeEEEecchHHHHH
Confidence 6778888999876556666665555566789999886665111 1111122222222 22222222221111111
Q ss_pred -hcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 004092 291 -MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (774)
Q Consensus 291 -i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~ 369 (774)
....+. .+..+.|. -++. ..... .. ...+.+.+.+.+|..-.+. .++ ++|+..+.+...+
T Consensus 114 ~~~~~v~-~~llyfpt-~m~~----~l~~~------~~-~~~~~~~~tIlvGNSgd~S---N~H---ie~L~~l~~~~~~ 174 (322)
T PRK02797 114 QRHPKVP-GSLLYFPT-RMDP----SLNTM------AN-DRQRAGKMTILVGNSGDRS---NRH---IEALRALHQQFGD 174 (322)
T ss_pred HhcCCCC-ccEEecCC-cchh----hhccc------cc-cccCCCceEEEEeCCCCCc---ccH---HHHHHHHHHHhCC
Confidence 111222 23444441 1111 00000 00 0123345788888788887 888 5555555443221
Q ss_pred CCCCCCCeEEEE-Ee-CCCCCchHHHHHHHHHHcCCCCccEEEcc-Cc--ccHHHHHHHcCEEEEcCccCcCCccHHHHH
Q 004092 370 ENESNSPIKVMI-LS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (774)
Q Consensus 370 ~~~~~~~v~LvI-vG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG-~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llE 444 (774)
++++++ .| |...++|.+.+++.++++--.+ ++..+- .. +|..++++.||+.++.-..- ||+|.. +-
T Consensus 175 ------~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~-~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQ-QgiGnl-~l 245 (322)
T PRK02797 175 ------NVKIIVPMGYPANNQAYIEEVRQAGLALFGAE-NFQILTEKLPFDDYLALLRQCDLGYFIFARQ-QGIGTL-CL 245 (322)
T ss_pred ------CeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc-cEEehhhhCCHHHHHHHHHhCCEEEEeechh-hHHhHH-HH
Confidence 277666 44 4466789999999999887645 577665 33 88999999999999987665 578765 56
Q ss_pred HHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004092 445 ALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAM 523 (774)
Q Consensus 445 AMA~G~PVIat-d~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~ 523 (774)
.+.+|+||+.+ +.+-..++.+.|. -++++.++. -.++. .+..++|+..-++.+. |+.++.++.|.+
T Consensus 246 Li~~G~~v~l~r~n~fwqdl~e~gv-~Vlf~~d~L---~~~~v--------~e~~rql~~~dk~~I~-Ff~pn~~~~W~~ 312 (322)
T PRK02797 246 LIQLGKPVVLSRDNPFWQDLTEQGL-PVLFTGDDL---DEDIV--------REAQRQLASVDKNIIA-FFSPNYLQGWRN 312 (322)
T ss_pred HHHCCCcEEEecCCchHHHHHhCCC-eEEecCCcc---cHHHH--------HHHHHHHHhhCcceee-ecCHhHHHHHHH
Confidence 89999999776 5666677766655 344554333 11111 1223334444444444 999999999999
Q ss_pred HHHHHhc
Q 004092 524 LLENVLK 530 (774)
Q Consensus 524 L~e~ll~ 530 (774)
+++.+..
T Consensus 313 ~l~~~~g 319 (322)
T PRK02797 313 ALAIAAG 319 (322)
T ss_pred HHHHhhC
Confidence 9988643
No 130
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.78 E-value=0.007 Score=65.66 Aligned_cols=283 Identities=14% Similarity=0.147 Sum_probs=157.4
Q ss_pred EEEcccchhHHHHh----hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHH
Q 004092 198 VAILQTGREKASFV----NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK 273 (774)
Q Consensus 198 i~~l~~~~~l~~~i----~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~ 273 (774)
+......+.+...+ +..+.+-+++|..........++..+....++.|.+-|..++.....+ .-+++...+.
T Consensus 57 i~~~~~Kk~la~avi~~a~~~r~~kff~HGqFn~~lwlaLl~g~~~~~k~~WhIWGaDLYe~~~~~----k~rlfy~lRr 132 (360)
T PF07429_consen 57 IECFSSKKALAQAVIAKAKADRADKFFLHGQFNPWLWLALLFGKIKLKKCYWHIWGADLYEDSRSL----KFRLFYFLRR 132 (360)
T ss_pred eEEecCHHHHHHHHHHHHhhCccceEEEeccCcHHHHHHHHcCCccccceEEEEeCchhhcccccc----chhHHHHHHH
Confidence 44455555544432 236788899999877556666665556667899999986666321111 1122222222
Q ss_pred -HHHhccEEEccCCcch---hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccc
Q 004092 274 -VFNRATVVVFPDYVLP---MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (774)
Q Consensus 274 -~~~~a~~vv~ps~~~~---~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~Kg 349 (774)
...+...+......+. ..+..... ...+.| ..++... .. .......+...-+.+|..-.+.
T Consensus 133 ~aq~rvg~V~at~GDl~~~~q~~~~~~~-~~lyfP-t~m~~~~----~~-------~~~~~~~~~~ltILvGNSgd~s-- 197 (360)
T PF07429_consen 133 LAQKRVGHVFATRGDLAYFQQRYPRVPA-SLLYFP-TRMDPAL----TL-------SEKNKKNKGKLTILVGNSGDPS-- 197 (360)
T ss_pred HHHhhcCeEEEEcchHHHHHHHcCCCCc-eEEEcC-CCCchhh----hc-------cccccCCCCceEEEEcCCCCCC--
Confidence 2223333222111122 22222222 244444 2333210 00 0111123345778888778887
Q ss_pred cccHHHHHHHHHHchhhcccCCCCCCCeEEEE-Ee-CCCCCchHHHHHHHHHHcCCCCccEEEcc-Cc--ccHHHHHHHc
Q 004092 350 WLEHALILRALLPLFSEVSVENESNSPIKVMI-LS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDSVLNTA 424 (774)
Q Consensus 350 iKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvI-vG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG-~~--~dl~~~l~aa 424 (774)
-++ ++|+..|.+...+ ++++++ .| |...++|.+.+.+.++++--.+ ++..+- +. +|..++++.|
T Consensus 198 -NnH---ieaL~~L~~~~~~------~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~-~~~iL~e~mpf~eYl~lL~~c 266 (360)
T PF07429_consen 198 -NNH---IEALEALKQQFGD------DVKIIVPLSYGANNQAYIQQVIQAGKELFGAE-NFQILTEFMPFDEYLALLSRC 266 (360)
T ss_pred -ccH---HHHHHHHHHhcCC------CeEEEEECCCCCchHHHHHHHHHHHHHhcCcc-ceeEhhhhCCHHHHHHHHHhC
Confidence 888 6666666543221 267655 45 5556789999999999775544 576654 44 8899999999
Q ss_pred CEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc-cccccCccEEEEcCC--CHHHHHHHHHHHHHcCCCcHHHHHH
Q 004092 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDDRVNGYLFPKE--NIKALTHIILQVITNGKISPFARNI 501 (774)
Q Consensus 425 DI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~-EiV~dg~~G~Lv~~~--d~e~La~aI~~Ll~d~~~~~~r~~m 501 (774)
|+.+++...- ||+|+. +-.+.+|+||+.+.....- ++.+.+. -+++..+ |...++++=.++..-
T Consensus 267 Dl~if~~~RQ-QgiGnI-~lLl~~G~~v~L~~~np~~~~l~~~~i-pVlf~~d~L~~~~v~ea~rql~~~---------- 333 (360)
T PF07429_consen 267 DLGIFNHNRQ-QGIGNI-CLLLQLGKKVFLSRDNPFWQDLKEQGI-PVLFYGDELDEALVREAQRQLANV---------- 333 (360)
T ss_pred CEEEEeechh-hhHhHH-HHHHHcCCeEEEecCChHHHHHHhCCC-eEEeccccCCHHHHHHHHHHHhhC----------
Confidence 9999999775 578764 5689999999887655444 4444433 3444322 334444443333332
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004092 502 ASIGRRSVKNLMALETIEGYAMLLEN 527 (774)
Q Consensus 502 ~~~ar~~ak~fs~~~~a~~y~~L~e~ 527 (774)
-++.+ .|..++..+.|.+.+.-
T Consensus 334 ---dk~~i-aFf~pny~~~w~~~l~~ 355 (360)
T PF07429_consen 334 ---DKQQI-AFFAPNYLQGWRQALRL 355 (360)
T ss_pred ---cccce-eeeCCchHHHHHHHHHH
Confidence 01111 26667777777776654
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.66 E-value=0.0077 Score=64.12 Aligned_cols=279 Identities=14% Similarity=0.127 Sum_probs=160.0
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccch----------------hHHHHhhhcCccEEEE
Q 004092 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR----------------EKASFVNWLNYDGILV 221 (774)
Q Consensus 158 G~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~----------------~l~~~i~~~~~DIIhv 221 (774)
.......++...|+++||+|.+-|...+.....++.+|++...+.-.. .+.+++...+||+.+.
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~ 90 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIG 90 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEee
Confidence 344567789999999999999999888888888888888876654322 2445566789999775
Q ss_pred -cCCchhHHHHHHHhCCCCCCCEEEEEcC-chhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch--hhcccCCC
Q 004092 222 -NSLEAKVVISNIMQEPFKSLPLVWTIHE-GTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP--MMYSAFDA 297 (774)
Q Consensus 222 -hs~~~~~~l~~Ll~~~~~~ipvI~tiHg-~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~--~i~~~v~~ 297 (774)
|++.. +.++..+ ++|.|+.... .+.. ..+. .+..++.+..|..... ...-+-++
T Consensus 91 ~~s~~l-~rvafgL-----g~psIi~~D~ehA~~--qnkl--------------~~Pla~~ii~P~~~~~~~~~~~G~~p 148 (346)
T COG1817 91 KHSPEL-PRVAFGL-----GIPSIIFVDNEHAEA--QNKL--------------TLPLADVIITPEAIDEEELLDFGADP 148 (346)
T ss_pred cCCcch-hhHHhhc-----CCceEEecCChhHHH--Hhhc--------------chhhhhheecccccchHHHHHhCCCc
Confidence 44444 2333333 4687776553 1111 1111 2223333333322211 11112222
Q ss_pred CCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCC-EEEEEEec-ccccccccccHHHHHHHHHHchhhcccCCCCCC
Q 004092 298 GNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDD-LVIAIVGT-QFMYRGLWLEHALILRALLPLFSEVSVENESNS 375 (774)
Q Consensus 298 ~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~-~vIl~vGs-rl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~ 375 (774)
.++.-.+|..--.+ ...|.+ ..++-+++|+.++. .+++=.-+ .-.+..|-.+.+.+.++++.+.+.
T Consensus 149 ~~i~~~~giae~~~-v~~f~p--d~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~--------- 216 (346)
T COG1817 149 NKISGYNGIAELAN-VYGFVP--DPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKY--------- 216 (346)
T ss_pred cceecccceeEEee-cccCCC--CHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhC---------
Confidence 23322222110000 011212 35667889999864 44443322 233444446666677777777653
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 376 PIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 376 ~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
-.+++-.+ ...++..+ +..+ ++..-..-|-..++-.|++++-.+ |.---||...|+|.|++
T Consensus 217 --giV~ipr~------~~~~eife--~~~n--~i~pk~~vD~l~Llyya~lvig~g-------gTMarEaAlLGtpaIs~ 277 (346)
T COG1817 217 --GIVLIPRE------KEQAEIFE--GYRN--IIIPKKAVDTLSLLYYATLVIGAG-------GTMAREAALLGTPAISC 277 (346)
T ss_pred --cEEEecCc------hhHHHHHh--hhcc--ccCCcccccHHHHHhhhheeecCC-------chHHHHHHHhCCceEEe
Confidence 33444321 22334444 5544 443334456667888899988443 34456999999999998
Q ss_pred CCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 456 DLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 456 d~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.-| +..++..+ .|.++...|+.+..+...+++.+
T Consensus 278 ~pGkll~vdk~lie--~G~~~~s~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 278 YPGKLLAVDKYLIE--KGLLYHSTDEIAIVEYAVRNLKY 314 (346)
T ss_pred cCCccccccHHHHh--cCceeecCCHHHHHHHHHHHhhc
Confidence 744 34444444 68899988888888888888877
No 132
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.28 E-value=0.019 Score=63.59 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=63.6
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEc
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~fl 411 (774)
++..+.++-|||-..-+ +.+..+++|+..+.+++ ..+++.|.+.. +.+++...+. . .+.+.
T Consensus 166 ~~~~I~llPGSR~~Ei~--~llP~~~~aa~~L~~~~---------~~~~i~~a~~~----~~i~~~~~~~--~--~~~~~ 226 (347)
T PRK14089 166 KEGTIAFMPGSRKSEIK--RLMPIFKELAKKLEGKE---------KILVVPSFFKG----KDLKEIYGDI--S--EFEIS 226 (347)
T ss_pred CCCEEEEECCCCHHHHH--HHHHHHHHHHHHHhhcC---------cEEEEeCCCcH----HHHHHHHhcC--C--CcEEe
Confidence 34556677777654431 66677779988887642 57777774332 4455544422 2 24444
Q ss_pred cCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 412 AAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 412 G~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
+ +..++|++||+.+..| |.+.+|++.+|+|.|...
T Consensus 227 ~---~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 227 Y---DTHKALLEAEFAFICS-------GTATLEAALIGTPFVLAY 261 (347)
T ss_pred c---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEEEE
Confidence 3 6678999999999887 455569999999988743
No 133
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=97.28 E-value=0.0076 Score=60.56 Aligned_cols=157 Identities=12% Similarity=0.099 Sum_probs=88.5
Q ss_pred CeEEEEecC---CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchh--HH----------H
Q 004092 145 PQLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGRE--KA----------S 209 (774)
Q Consensus 145 ~rialV~~~---L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~--l~----------~ 209 (774)
.+|++|-.- -..||.|+.+.+|+..|.++|++|+|+|..+........-.|+.+..++.... +. .
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~ 81 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLH 81 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHH
Confidence 456666664 34799999999999999999999999998764422233334444444433221 10 1
Q ss_pred Hh---hh--cCccEEEEcCCchhHHHHHHHhC-CCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHH-HHHhccEEE
Q 004092 210 FV---NW--LNYDGILVNSLEAKVVISNIMQE-PFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK-VFNRATVVV 282 (774)
Q Consensus 210 ~i---~~--~~~DIIhvhs~~~~~~l~~Ll~~-~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~-~~~~a~~vv 282 (774)
.+ +. .++|+|+++....++++..+... +..+.|+++++||-...+ .|+.. ....++...+. +.+.++.++
T Consensus 82 al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR--~KW~~-~~k~~lk~~E~~avk~ad~lI 158 (185)
T PF09314_consen 82 ALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEWKR--AKWGR-PAKKYLKFSEKLAVKYADRLI 158 (185)
T ss_pred HHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchhhh--hhcCH-HHHHHHHHHHHHHHHhCCEEE
Confidence 11 11 35789999988744455554432 234679999999844332 12211 11222222222 455666655
Q ss_pred ccCCcch-hhcccCCCCCEEEeC
Q 004092 283 FPDYVLP-MMYSAFDAGNYYVIP 304 (774)
Q Consensus 283 ~ps~~~~-~i~~~v~~~ki~vIp 304 (774)
..+..+. .+...+...+..+||
T Consensus 159 aDs~~I~~y~~~~y~~~~s~~Ia 181 (185)
T PF09314_consen 159 ADSKGIQDYIKERYGRKKSTFIA 181 (185)
T ss_pred EcCHHHHHHHHHHcCCCCcEEec
Confidence 5544432 223333335566676
No 134
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.23 E-value=2.1e-05 Score=77.59 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=61.0
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc--------cccccccCccEEEEcC--C
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN--------IRKYVDDRVNGYLFPK--E 476 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg--------i~EiV~dg~~G~Lv~~--~ 476 (774)
+|.++++.+++.++|+.||++|.-. -+.++.|++++|+|.|.-+..+ ....+.+...|..+.. .
T Consensus 56 ~v~~~~~~~~m~~~m~~aDlvIs~a------G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~ 129 (167)
T PF04101_consen 56 NVKVFGFVDNMAELMAAADLVISHA------GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESEL 129 (167)
T ss_dssp CCEEECSSSSHHHHHHHHSEEEECS-------CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-
T ss_pred cEEEEechhhHHHHHHHcCEEEeCC------CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccC
Confidence 6999999999999999999988643 3679999999999988766655 2222322222444333 2
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 004092 477 NIKALTHIILQVITNGKISPFARNIASIG 505 (774)
Q Consensus 477 d~e~La~aI~~Ll~d~~~~~~r~~m~~~a 505 (774)
+++.|.++|..++.+ +.....|.+++
T Consensus 130 ~~~~L~~~i~~l~~~---~~~~~~~~~~~ 155 (167)
T PF04101_consen 130 NPEELAEAIEELLSD---PEKLKEMAKAA 155 (167)
T ss_dssp SCCCHHHHHHCHCCC---HH-SHHHCCCH
T ss_pred CHHHHHHHHHHHHcC---cHHHHHHHHHH
Confidence 367899999999998 76666665543
No 135
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.08 E-value=0.002 Score=67.89 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=30.0
Q ss_pred eEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 146 QLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 146 rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
||++|.... ..||...++..|+++|+++|++|.|+.+..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 466666644 469999999999999999999999999866
No 136
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.05 E-value=0.015 Score=64.76 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=127.1
Q ss_pred CCCeEEEEecC-CCCChHHHHHHHHHHHHHHc--CCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEE
Q 004092 143 RKPQLALVFPD-LLIDPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGI 219 (774)
Q Consensus 143 rk~rialV~~~-L~~GG~e~~v~~Lak~L~~~--G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DII 219 (774)
++.+|++.... -..++-...+ .+.|.+. ++++..++..... .....+..+......+ .+......+++
T Consensus 12 ~~~~Ivf~~~~g~~~~dN~~~l---~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~s~~---~~~~~~~Ak~~ 82 (369)
T PF04464_consen 12 KKKKIVFESESGNKFSDNPKAL---FEYLIKNYPDYKIYWIINKKSP---ELKPKGIKVVKFGSLK---HIYYLARAKYI 82 (369)
T ss_dssp EEEEEEEEBTTTTBS-HHHHHH---HHHHHHH-TTSEEEEEESSGGG-------SS-EEEETTSHH---HHHHHHHEEEE
T ss_pred cCCEEEEEECCCCCCCCCHHHH---HHHHHhhCCCcEEEEEEcCchH---hhccCCceEEeecHHH---HHHHHHhCcEE
Confidence 34445555442 2344544444 4455433 4555554433222 2223343433333222 22223457777
Q ss_pred EEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch-hhcc--cCC
Q 004092 220 LVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP-MMYS--AFD 296 (774)
Q Consensus 220 hvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~-~i~~--~v~ 296 (774)
++.+.... .. ......+.++|.++||.++.. +..-.... ..............+.+++++.... .... +++
T Consensus 83 i~~~~~~~-~~---~~~~~~~~~~i~lwHG~~~K~-~g~~~~~~-~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~ 156 (369)
T PF04464_consen 83 ISDSYFPD-LI---YFKKRKNQKYIQLWHGIPLKK-IGYDSPDN-KNYRKNYKRNYRNYDYFIVSSEFEKEIFKKAFGYP 156 (369)
T ss_dssp EESS---T------TS---TTSEEEE--SS--SB---GGG-S----TS-HHHHHHHTT-SEEEESSHHHHHHHHHHTT--
T ss_pred EECCCCCc-cc---ccccCCCcEEEEecCCCcccc-cchhcccc-ccchhhhhhhccCCcEEEECCHHHHHHHHHHhccC
Confidence 77743331 11 112245679999999964431 10000000 0000022223445555555544422 2222 233
Q ss_pred CCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEeccccccccc---ccH--HHHHHHHHHchhhcccCC
Q 004092 297 AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLW---LEH--ALILRALLPLFSEVSVEN 371 (774)
Q Consensus 297 ~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~Kgi---Kg~--~lLLeA~~~L~~~~p~~~ 371 (774)
.+++.+. |.|-...-+... ....+.+++.++++.++.+|+|+-+ +.....- +.. ..-++.+.. ...++
T Consensus 157 ~~~i~~~-G~PR~D~l~~~~-~~~~~~i~~~~~~~~~~k~ILyaPT-~R~~~~~~~~~~~~~~~~~~~l~~--~~~~~-- 229 (369)
T PF04464_consen 157 EDKILVT-GYPRNDYLFNKS-KENRNRIKKKLGIDKDKKVILYAPT-WRDNSSNEYFKFFFSDLDFEKLNF--LLKNN-- 229 (369)
T ss_dssp GGGEEES---GGGHHHHHST-T-HHHHHHHHTT--SS-EEEEEE-----GGG--GGSS----TT-HHHHHH--HHTTT--
T ss_pred cceEEEe-CCCeEhHHhccC-HHHHHHHHHHhccCCCCcEEEEeec-cccccccccccccccccCHHHHHH--HhCCC--
Confidence 3444433 433221111111 1114567888999999889999862 2221000 011 112233332 22233
Q ss_pred CCCCCeEEEEEeCCCCCchHHHHHHHHHH-cCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC
Q 004092 372 ESNSPIKVMILSGDSTSNYSVVIEAIAHN-LHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK 450 (774)
Q Consensus 372 ~~~~~v~LvIvGG~~~e~Y~~~L~~la~~-lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~ 450 (774)
+.+++-.-|.. +..... ....+ +|.+.....++.+++..||++|.= ++.++.|++.+++
T Consensus 230 -----~~li~k~Hp~~-------~~~~~~~~~~~~-~i~~~~~~~~~~~ll~~aDiLITD-------ySSi~fD~~~l~K 289 (369)
T PF04464_consen 230 -----YVLIIKPHPNM-------KKKFKDFKEDNS-NIIFVSDNEDIYDLLAAADILITD-------YSSIIFDFLLLNK 289 (369)
T ss_dssp -----EEEEE--SHHH-------HTT----TT-TT-TEEE-TT-S-HHHHHHT-SEEEES-------S-THHHHHGGGT-
T ss_pred -----cEEEEEeCchh-------hhchhhhhccCC-cEEECCCCCCHHHHHHhcCEEEEe-------chhHHHHHHHhCC
Confidence 77777663211 111111 23444 788887777999999999999843 5779999999999
Q ss_pred CEEE--cCCcc-------cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 451 PIIA--PDLSN-------IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa--td~gg-------i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|||- .|... ..+ ..+...|.++. +.++|.++|..++++
T Consensus 290 Piify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~--~~~eL~~~i~~~~~~ 336 (369)
T PF04464_consen 290 PIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVY--NFEELIEAIENIIEN 336 (369)
T ss_dssp -EEEE-TTTTTTTTTSSBSS--TTTSSSS-EES--SHHHHHHHHTTHHHH
T ss_pred CEEEEeccHHHHhhccCCCCc-hHhhCCCceeC--CHHHHHHHHHhhhhC
Confidence 9995 34321 122 12223455654 799999999999887
No 137
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.89 E-value=0.12 Score=56.32 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=65.4
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ 457 (774)
-++|.|+...+.-++.+.+.+. +.+ +|.+.-+.+++..+++.|+..|.-+-+ +++.|-+++|||.+.-+.
T Consensus 253 ~~ivtGP~MP~~~r~~l~~~A~--~~p--~i~I~~f~~~~~~ll~gA~~vVSm~GY------NTvCeILs~~k~aLivPr 322 (400)
T COG4671 253 WLIVTGPFMPEAQRQKLLASAP--KRP--HISIFEFRNDFESLLAGARLVVSMGGY------NTVCEILSFGKPALIVPR 322 (400)
T ss_pred eEEEeCCCCCHHHHHHHHHhcc--cCC--CeEEEEhhhhHHHHHHhhheeeecccc------hhhhHHHhCCCceEEecc
Confidence 3555564333222333333333 223 699999999999999999999976533 488999999999766554
Q ss_pred cccc-cccc-------cCccEEEEcC-CCHHHHHHHHHHHHHc
Q 004092 458 SNIR-KYVD-------DRVNGYLFPK-ENIKALTHIILQVITN 491 (774)
Q Consensus 458 ggi~-EiV~-------dg~~G~Lv~~-~d~e~La~aI~~Ll~d 491 (774)
.... |... =|-...+.|. -+++.||++|...+.-
T Consensus 323 ~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 323 AAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred CCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 4332 3221 1222333332 3478888888888773
No 138
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.76 E-value=0.047 Score=62.68 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=125.7
Q ss_pred HHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcC
Q 004092 324 VRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH 402 (774)
Q Consensus 324 lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lg 402 (774)
.|..++++++.+++..+. .+ + |--...++.+..+.+..|+ -.|++.- +...+ ..++..++++|
T Consensus 749 ~r~~y~Lp~d~vvf~~FN-qL-y----KidP~~l~~W~~ILk~VPn-------S~LwllrfPa~ge---~rf~ty~~~~G 812 (966)
T KOG4626|consen 749 TRSQYGLPEDAVVFCNFN-QL-Y----KIDPSTLQMWANILKRVPN-------SVLWLLRFPAVGE---QRFRTYAEQLG 812 (966)
T ss_pred CCCCCCCCCCeEEEeech-hh-h----cCCHHHHHHHHHHHHhCCc-------ceeEEEeccccch---HHHHHHHHHhC
Confidence 366789999987666666 32 2 4445668999999999898 7888877 33222 56889999999
Q ss_pred CCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc------cccccCccEEEEc
Q 004092 403 YPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR------KYVDDRVNGYLFP 474 (774)
Q Consensus 403 L~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~------EiV~dg~~G~Lv~ 474 (774)
++.++|+|..-. +|=..-.+-+||.+-.....+-+ +-+|.+-+|+|+|+-+..... -+..-|. |-++.
T Consensus 813 l~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhT---Tg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl-~hlia 888 (966)
T KOG4626|consen 813 LEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHT---TGMDVLWAGVPMVTMPGETLASRVAASLLTALGL-GHLIA 888 (966)
T ss_pred CCccceeeccccchHHHHHhhhhhhhcccCcCcCCcc---cchhhhccCCceeecccHHHHHHHHHHHHHHccc-HHHHh
Confidence 988899999854 55556677899998666554222 345888999999986533221 1111222 33332
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-H--hcCHHHHHHHHHHHHHHHhc
Q 004092 475 KENIKALTHIILQVITNGKISPFARNIASIGRRSV-K--NLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 475 ~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k--~fs~~~~a~~y~~L~e~ll~ 530 (774)
.+-++..+.-.++-.| .+..+++...-+... . -|+....+...+++|-+.-+
T Consensus 889 -k~~eEY~~iaV~Latd---~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~ 943 (966)
T KOG4626|consen 889 -KNREEYVQIAVRLATD---KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWK 943 (966)
T ss_pred -hhHHHHHHHHHHhhcC---HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHH
Confidence 4678888888888888 777777766655444 2 38888888888888877644
No 139
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=96.40 E-value=0.48 Score=49.98 Aligned_cols=301 Identities=11% Similarity=0.067 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh--hhcCccEEEccc--chhHHHHhhhcCccEEEEcCCchhH-----
Q 004092 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--RNIGVPVAILQT--GREKASFVNWLNYDGILVNSLEAKV----- 228 (774)
Q Consensus 158 G~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~--~~~gi~i~~l~~--~~~l~~~i~~~~~DIIhvhs~~~~~----- 228 (774)
|+.+.....-.++.+.|++++++...+....... +...+.+..+.+ .....+.+ .+||++++++.++..
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~~~~e~de~v~~v--N~yDI~m~nSvPa~~vqE~~ 79 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKYLAKEYDETVKKV--NDYDIVMFNSVPATKVQEAI 79 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE-TTTHHHHHHHHH--TSSSEEEEEE--BTTS-HHH
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehhhHHHHHHHHHHh--hccCEEEEecccCchHHHHH
Confidence 6777788888899999999999987663322111 112223333322 22223333 489999999865421
Q ss_pred --HHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc---ch-----hhcccCCC-
Q 004092 229 --VISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV---LP-----MMYSAFDA- 297 (774)
Q Consensus 229 --~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~---~~-----~i~~~v~~- 297 (774)
.+..++......+++|...|+.... .+.+. .......+.++.+..-+.. .. .+......
T Consensus 80 iNnY~kii~~Ik~~ik~V~~~Hdh~~l-sI~rn---------~~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~ 149 (355)
T PF11440_consen 80 INNYEKIIKKIKPSIKVVGFMHDHNKL-SIDRN---------PYLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLF 149 (355)
T ss_dssp HHHHHHHHHCS-TTSEEEEEE---SHH-HHTTB---------SSHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SS
T ss_pred HHHHHHHHHhccccceeEEEeecccee-ecccc---------ccHHHHHHhhcEEEeccccchHHHHHHHhhccccCchh
Confidence 1233444433356778888863211 01100 0111122334422211111 00 01111111
Q ss_pred CCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEE---EEEecccccccccccHHHHHHHHHHchhhcccCCCCC
Q 004092 298 GNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVI---AIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (774)
Q Consensus 298 ~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vI---l~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~ 374 (774)
+++...|- .+...++..-...|..+..+..++.. +|+| |..-- ||...+++.-++..+. +.
T Consensus 150 ~~i~~~p~------v~nfqpp~~i~~~Rstywkd~se~nmnv~~yig-R~Tt~---kG~~~mfD~h~~~lK~-~~----- 213 (355)
T PF11440_consen 150 DRIKKFPM------VFNFQPPMDINKYRSTYWKDVSEKNMNVNRYIG-RQTTW---KGPRRMFDLHEKILKP-AG----- 213 (355)
T ss_dssp S-------------EEE----B-HHHHHHHH---GGGSEEEEEEEE---SSGG---G-HHHHHHHHHHTTTT-TT-----
T ss_pred hhhhhcce------eeecCCcccHHHHHHHHhhhhHhhhcccceeee-eeeee---cCcHHHhhhHHHhcCC-cc-----
Confidence 22323330 01111222234566666655555555 8999 55554 9999999988886655 55
Q ss_pred CCeEEEEEe-CCCCCchHHHHHHH-----------HHHcCC-CCccEEEcc-Cc-ccHHHHHHHcCEEEEcCc-----cC
Q 004092 375 SPIKVMILS-GDSTSNYSVVIEAI-----------AHNLHY-PLGVVKHMA-AE-GDVDSVLNTADVVIYGSF-----LE 434 (774)
Q Consensus 375 ~~v~LvIvG-G~~~e~Y~~~L~~l-----------a~~lgL-~~~~V~flG-~~-~dl~~~l~aaDI~V~PS~-----~E 434 (774)
++-++-| .... ..- .+.+. +.+..+ ++..+..+| ++ ++..+.++.+-..+.-+. .+
T Consensus 214 --~~t~~~GierS~-A~~-~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~ 289 (355)
T PF11440_consen 214 --FKTIMEGIERSP-AKI-SIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQ 289 (355)
T ss_dssp ---EEEEE---SST-HHH-HHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-S
T ss_pred --hhHHhhhhhcCC-cee-eeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHH
Confidence 8888888 3332 111 11111 001111 233577777 44 788888888877665441 22
Q ss_pred cCCccHHHHHHHHcCC-CEEEcCCccccc-------ccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 435 EQTFPEILVKALCFRK-PIIAPDLSNIRK-------YVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 435 ~qGfp~~llEAMA~G~-PVIatd~ggi~E-------iV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
. .+-.+-+|..|||. ||.-...|..-. ++......+.++..|.++-.+.|.++.++
T Consensus 290 r-~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 290 R-SMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp S----HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred h-hhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHHHHHhcc
Confidence 2 57789999999996 777766554333 33333446778888999999988888766
No 140
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.35 E-value=1.6 Score=49.83 Aligned_cols=98 Identities=9% Similarity=0.137 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCCCccEEEc-c--CcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc-cccccccc
Q 004092 391 SVVIEAIAHNLHYPLGVVKHM-A--AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS-NIRKYVDD 466 (774)
Q Consensus 391 ~~~L~~la~~lgL~~~~V~fl-G--~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g-gi~EiV~d 466 (774)
....+++.+.+.-+. ++.++ + ...++..+++.||++|-.-.+ .++-|+++|+|+|+-.+. -...++.+
T Consensus 293 ~~~~~~l~~~~~~~~-~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-------a~I~a~~~gvP~i~i~Y~~K~~~~~~~ 364 (426)
T PRK10017 293 RMVALNLRQHVSDPA-RYHVVMDELNDLEMGKILGACELTVGTRLH-------SAIISMNFGTPAIAINYEHKSAGIMQQ 364 (426)
T ss_pred HHHHHHHHHhccccc-ceeEecCCCChHHHHHHHhhCCEEEEecch-------HHHHHHHcCCCEEEeeehHHHHHHHHH
Confidence 344566666555433 34432 2 225777999999998865443 567899999999986553 12222221
Q ss_pred -CccEEEEcC--CCHHHHHHHHHHHHHcCCCcHHHH
Q 004092 467 -RVNGYLFPK--ENIKALTHIILQVITNGKISPFAR 499 (774)
Q Consensus 467 -g~~G~Lv~~--~d~e~La~aI~~Ll~d~~~~~~r~ 499 (774)
|...++++. -+.++|.+.+.+++++ .+..+
T Consensus 365 lg~~~~~~~~~~l~~~~Li~~v~~~~~~---r~~~~ 397 (426)
T PRK10017 365 LGLPEMAIDIRHLLDGSLQAMVADTLGQ---LPALN 397 (426)
T ss_pred cCCccEEechhhCCHHHHHHHHHHHHhC---HHHHH
Confidence 222343443 3567899999999998 65544
No 141
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.99 Score=54.58 Aligned_cols=209 Identities=9% Similarity=0.045 Sum_probs=129.5
Q ss_pred EEEeCCCCCCcccccccCchh-hHHHHHHhCCC-CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCe
Q 004092 300 YYVIPGSPAKAWEADTNMDLY-NDTVRVKMGFK-PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPI 377 (774)
Q Consensus 300 i~vIpg~gvd~~~~~~~~~~~-k~~lR~~lgl~-~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v 377 (774)
+..+| +|+|...+....... ...-..+++-+ .++.+++.+- ++.+. ||...=+.|+.++..++|. -..++
T Consensus 241 v~~~p-igid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD-~~d~~---kg~~~Kl~a~e~~L~~~pe---~~~kV 312 (732)
T KOG1050|consen 241 VKALP-IGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVD-RLDSI---KGIQLKLLAFEQFLEEYPE---WIDKV 312 (732)
T ss_pred eeecc-cccchHHhhccccchhHHHHHHHHhhhccCCceEeccc-ccccc---cCchHHHHHHHHHHHhChh---hhceE
Confidence 34444 566664443333322 11122222222 3556777777 88888 5555558889888888886 33447
Q ss_pred EEEEEe-CCCC--Cch---HHHHHHHHHHc----CCCC-ccEEEcc-Cc--ccHHHHHHHcCEEEEcCccCcCCccHHHH
Q 004092 378 KVMILS-GDST--SNY---SVVIEAIAHNL----HYPL-GVVKHMA-AE--GDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (774)
Q Consensus 378 ~LvIvG-G~~~--e~Y---~~~L~~la~~l----gL~~-~~V~flG-~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~ll 443 (774)
.++.+. +... ++| ...+...+.+. +-.. ..|.++- .. .++.+++..+|+++..+..+ |..++.+
T Consensus 313 vliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rd--Gmnl~~~ 390 (732)
T KOG1050|consen 313 VLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRD--GMNLVFL 390 (732)
T ss_pred EEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccccc--ccchhhh
Confidence 777776 4222 222 22222222221 1111 1344443 22 77889999999999999999 8999999
Q ss_pred HHHHcC----CCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHHHhcCHHHHH
Q 004092 444 KALCFR----KPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI-GRRSVKNLMALETI 518 (774)
Q Consensus 444 EAMA~G----~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~-ar~~ak~fs~~~~a 518 (774)
|..+|. .+.|.+...|....++++ ..++.+.|.++++.+|...++. ++...++... .+..+...+....+
T Consensus 391 e~i~~~~~~~~~lVlsef~G~~~tl~d~--aivvnpw~~~~~~~~i~~al~~---s~~e~~~r~~~~~~~v~~~~~~~W~ 465 (732)
T KOG1050|consen 391 EYILCQENKKSVLVLSEFIGDDTTLEDA--AIVVNPWDGDEFAILISKALTM---SDEERELREPKHYKYVSTHDVVYWA 465 (732)
T ss_pred HHHHhhcccCCceEEeeecccccccccc--CEEECCcchHHHHHHHHHHhhc---CHHHHhhcchhhhhhhcchhHHHHH
Confidence 999885 678888888888888774 5789999999999999999998 6665554432 23333333444444
Q ss_pred HHHHH
Q 004092 519 EGYAM 523 (774)
Q Consensus 519 ~~y~~ 523 (774)
..+.+
T Consensus 466 ~~~~~ 470 (732)
T KOG1050|consen 466 KSFLQ 470 (732)
T ss_pred HHHHH
Confidence 44444
No 142
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.01 E-value=4.6 Score=44.15 Aligned_cols=242 Identities=14% Similarity=0.128 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHHH-cCCeEEEEEcCCCcchhhhhhc--CccEEEcccchhHHHHhhhcCccEEEEcCCchhHHHHHHH
Q 004092 158 PQQLQMVTIAIALRE-IGYAIQVYSLEDGRAHEVWRNI--GVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIM 234 (774)
Q Consensus 158 G~e~~v~~Lak~L~~-~G~eV~V~t~~~~~~~~~~~~~--gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll 234 (774)
|.+.+..-||++|.. .++++..+.... .+... ................+....||+|+...-... .....+
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~-----~~~~lp~~~~~~~~~~~~~~~~~~~~~~pdLiIsaGr~t~-~~~~~l 75 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRR-----PWRWLPRLLPAPLRALLKPFSPALEPPWPDLIISAGRRTA-PAALAL 75 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEecccc-----chhhccccccchHHHhhhcccccccCCCCcEEEECCCchH-HHHHHH
Confidence 678899999999987 378887776544 01111 000000000001111233467999999887773 444444
Q ss_pred hCCCCC-CCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccC-CCCCEEEeCCCCCCccc
Q 004092 235 QEPFKS-LPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAF-DAGNYYVIPGSPAKAWE 312 (774)
Q Consensus 235 ~~~~~~-ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v-~~~ki~vIpg~gvd~~~ 312 (774)
.+...+ +++|+..+ +-. ... ..+.++.|.+. .. ...|+....+.+-
T Consensus 76 ~r~~gg~~~~V~i~~--P~~------~~~--------------~FDlvi~p~HD------~~~~~~Nvl~t~ga~~---- 123 (311)
T PF06258_consen 76 RRASGGRTKTVQIMD--PRL------PPR--------------PFDLVIVPEHD------RLPRGPNVLPTLGAPN---- 123 (311)
T ss_pred HHHcCCCceEEEEcC--CCC------Ccc--------------ccCEEEECccc------CcCCCCceEecccCCC----
Confidence 443333 46666555 111 111 22333444221 22 2355555554221
Q ss_pred ccccCchh----hHHHHHHhCCCCCCEEEEEEeccc-ccccccccHH---HHHHHHHHchhhcccCCCCCCCeEEEEEe-
Q 004092 313 ADTNMDLY----NDTVRVKMGFKPDDLVIAIVGTQF-MYRGLWLEHA---LILRALLPLFSEVSVENESNSPIKVMILS- 383 (774)
Q Consensus 313 ~~~~~~~~----k~~lR~~lgl~~~~~vIl~vGsrl-~~~KgiKg~~---lLLeA~~~L~~~~p~~~~~~~~v~LvIvG- 383 (774)
...+.. +..+...++-.+...+.+.+||-. .+. .+.+ .+++.+..+.+.++ ..++|..
T Consensus 124 --~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~---~~~~~~~~l~~~l~~~~~~~~--------~~~~vttS 190 (311)
T PF06258_consen 124 --RITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYR---WDEEDAERLLDQLAALAAAYG--------GSLLVTTS 190 (311)
T ss_pred --cCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcc---cCHHHHHHHHHHHHHHHHhCC--------CeEEEEcC
Confidence 111211 233334555556666777777422 222 3444 56667777666543 4788887
Q ss_pred CCCCCchHHHHHHHHHHcCCCCccEEEcc-Cc-ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc
Q 004092 384 GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN 459 (774)
Q Consensus 384 G~~~e~Y~~~L~~la~~lgL~~~~V~flG-~~-~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg 459 (774)
.--.. +....+.+.++-.. .+.+.. .- +-+..+|+.||.++...- +.+ -+.||.+.|+||..-+..+
T Consensus 191 RRTp~---~~~~~L~~~~~~~~-~~~~~~~~~~nPy~~~La~ad~i~VT~D----SvS-MvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 191 RRTPP---EAEAALRELLKDNP-GVYIWDGTGENPYLGFLAAADAIVVTED----SVS-MVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CCCcH---HHHHHHHHhhcCCC-ceEEecCCCCCcHHHHHHhCCEEEEcCc----cHH-HHHHHHHcCCCEEEecCCC
Confidence 32221 23333333333333 563433 22 447899999999998862 233 4689999999998877665
No 143
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.84 E-value=3.8 Score=44.91 Aligned_cols=113 Identities=13% Similarity=0.203 Sum_probs=68.8
Q ss_pred hHHHHHHhCCCC-CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHH
Q 004092 321 NDTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAH 399 (774)
Q Consensus 321 k~~lR~~lgl~~-~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~ 399 (774)
......++++++ +..+++..|+...+.|.|. .+...+.+..+.+. . .+++++||+.+. +..+++.+
T Consensus 161 ~~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp-~e~~~~li~~l~~~--~-------~~ivl~G~~~e~---~~~~~i~~ 227 (334)
T TIGR02195 161 QAAALAKFGLDTERPIIAFCPGAEFGPAKRWP-HEHYAELAKRLIDQ--G-------YQVVLFGSAKDH---PAGNEIEA 227 (334)
T ss_pred HHHHHHHcCCCCCCCEEEEcCCCCCCccCCCC-HHHHHHHHHHHHHC--C-------CEEEEEEChhhH---HHHHHHHH
Confidence 334556667664 4566677775543444443 33445555555432 2 688899976542 23334444
Q ss_pred HcCCCCccEEEccC--cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 400 NLHYPLGVVKHMAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 400 ~lgL~~~~V~flG~--~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
. .++..+.+.|. ..++..+++.||++|..- +..+-=|-|+|+|+|+-
T Consensus 228 ~--~~~~~~~l~g~~sL~el~ali~~a~l~I~~D-------SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 L--LPGELRNLAGETSLDEAVDLIALAKAVVTND-------SGLMHVAAALNRPLVAL 276 (334)
T ss_pred h--CCcccccCCCCCCHHHHHHHHHhCCEEEeeC-------CHHHHHHHHcCCCEEEE
Confidence 2 22313446674 389999999999999764 33455688999999983
No 144
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.73 E-value=3.8 Score=43.68 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccC--cccHHHHHHHcCEEE
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA--EGDVDSVLNTADVVI 428 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~--~~dl~~~l~aaDI~V 428 (774)
...+...+.+..+.++ + ++++++|++... +..+++.+..+-.+ .+.+.|. ..++..+++.||++|
T Consensus 137 w~~~~~~~l~~~l~~~--~-------~~ivl~g~~~e~---~~~~~i~~~~~~~~-~~~~~~~~~l~e~~~li~~~~l~I 203 (279)
T cd03789 137 WPAERFAALADRLLAR--G-------ARVVLTGGPAER---ELAEEIAAALGGPR-VVNLAGKTSLRELAALLARADLVV 203 (279)
T ss_pred CCHHHHHHHHHHHHHC--C-------CEEEEEechhhH---HHHHHHHHhcCCCc-cccCcCCCCHHHHHHHHHhCCEEE
Confidence 3445556777776654 3 788999965432 33445555433223 4556664 388999999999999
Q ss_pred EcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 429 YGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 429 ~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
.+- +..+--|.|+|+|+|+--
T Consensus 204 ~~D-------sg~~HlA~a~~~p~i~l~ 224 (279)
T cd03789 204 TND-------SGPMHLAAALGTPTVALF 224 (279)
T ss_pred eeC-------CHHHHHHHHcCCCEEEEE
Confidence 774 234445679999998843
No 145
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.60 E-value=2.4 Score=44.59 Aligned_cols=253 Identities=13% Similarity=0.094 Sum_probs=123.7
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCC-CcchhhhhhcCccEEEcccchhHH-HHhh---hcCccEEEEcCCchhHHH
Q 004092 156 IDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTGREKA-SFVN---WLNYDGILVNSLEAKVVI 230 (774)
Q Consensus 156 ~GG~e~~v~~Lak~L~~~G~eV~V~t~~~-~~~~~~~~~~gi~i~~l~~~~~l~-~~i~---~~~~DIIhvhs~~~~~~l 230 (774)
..|...++..||+.|.+.-|.+.++.... +.....|-.. +.+...+.+. ..+. ...||+|+...-.+ ..+
T Consensus 10 RtGnt~QaiaLa~~l~r~eyttk~l~~~~l~~lP~~wl~~----yp~~~~~~l~~~~~~r~p~~~Pdl~I~aGrrt-a~l 84 (329)
T COG3660 10 RTGNTHQAIALAEQLTRSEYTTKLLEYNNLAKLPNFWLAY----YPIHILRELFGPRLSRKPEQRPDLIITAGRRT-APL 84 (329)
T ss_pred CCccHHHHHHHHHHhhccceEEEEeeccccccCchhhhhc----CccHhHHHhhcCccccCccCCCceEEecccch-hHH
Confidence 56888899999999998667777766542 2233333221 1111111111 1122 24599999888777 355
Q ss_pred HHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCCc
Q 004092 231 SNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKA 310 (774)
Q Consensus 231 ~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~ 310 (774)
...+.+.+.++++|-..|- .+- .+..|.++.-+...... . ..+..|+..|.|++-..
T Consensus 85 ~~~lkk~~~~~~vVqI~~P-rlp-------~~~fDlvivp~HD~~~~-~--------------s~~~~Nilpi~Gs~h~V 141 (329)
T COG3660 85 AFYLKKKFGGIKVVQIQDP-RLP-------YNHFDLVIVPYHDWREE-L--------------SDQGPNILPINGSPHNV 141 (329)
T ss_pred HHHHHHhcCCceEEEeeCC-CCC-------cccceEEeccchhhhhh-h--------------hccCCceeeccCCCCcc
Confidence 5555555666445444441 111 11222222211110000 0 11235666676654333
Q ss_pred ccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCc
Q 004092 311 WEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSN 389 (774)
Q Consensus 311 ~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~ 389 (774)
. +......++ .-+.++-.+...+-++||+.... -...-+.+.+-...+.+.+.+ ....+++-- -...
T Consensus 142 t--~~~lAa~~e-~~~~~~p~~rq~vAVlVGg~nk~--f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRRTp-- 209 (329)
T COG3660 142 T--SQRLAALRE-AFKHLLPLPRQRVAVLVGGNNKA--FVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRRTP-- 209 (329)
T ss_pred c--HHHhhhhHH-HHHhhCCCCCceEEEEecCCCCC--CccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecCCc--
Confidence 1 111111122 23344444566777888843221 012223334434444433322 114555444 2222
Q ss_pred hHHHHHHHHHH-cCCCCccEEEccCc---ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 390 YSVVIEAIAHN-LHYPLGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 390 Y~~~L~~la~~-lgL~~~~V~flG~~---~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
+.++++.+. +.-.. .+.+-+.. +-..+++++||.+|..--.- .-..||.+.|+||-+-.
T Consensus 210 --~~~~s~l~~~l~s~~-~i~w~~~d~g~NPY~~~La~Adyii~TaDSi-----nM~sEAasTgkPv~~~~ 272 (329)
T COG3660 210 --DTVKSILKNNLNSSP-GIVWNNEDTGYNPYIDMLAAADYIISTADSI-----NMCSEAASTGKPVFILE 272 (329)
T ss_pred --HHHHHHHHhccccCc-eeEeCCCCCCCCchHHHHhhcceEEEecchh-----hhhHHHhccCCCeEEEe
Confidence 445555553 33333 34444431 34678999999999875322 23569999999997643
No 146
>PLN02670 transferase, transferring glycosyl groups
Probab=94.59 E-value=0.47 Score=54.84 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=71.0
Q ss_pred EEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcC------CC
Q 004092 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPK------EN 477 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~------~d 477 (774)
+.+.++..+. ++|+...+-.+-+. |--++++||+++|+|+|+-+..+ ....+.+-..|+.++. -+
T Consensus 341 ~vv~~W~PQ~-~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQV-KILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCHH-HHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 6667777433 47776666444442 23568899999999999976542 3334444456877753 25
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHH
Q 004092 478 IKALTHIILQVITNGKISPFARNIASIGRRSVKNL----MALETIEGYAMLLENV 528 (774)
Q Consensus 478 ~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~f----s~~~~a~~y~~L~e~l 528 (774)
.+++.++|.+++.+ ++ -.++.+++++..+.+ ...++++.+.+.+.+.
T Consensus 416 ~e~i~~av~~vm~~---~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 416 SDSVAESVRLAMVD---DA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHHHHhcC---cc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 89999999999987 42 334555666555444 4455555555555543
No 147
>PLN02448 UDP-glycosyltransferase family protein
Probab=94.57 E-value=0.79 Score=52.94 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=83.0
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEE
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~f 410 (774)
++..+.+.+|+..... ...+..++++++... ..++++. ++. ..+.+.. .+ ++.+
T Consensus 273 ~~~vvyvsfGs~~~~~--~~~~~~~~~~l~~~~------------~~~lw~~~~~~-----~~~~~~~-----~~-~~~v 327 (459)
T PLN02448 273 EGSVLYVSLGSFLSVS--SAQMDEIAAGLRDSG------------VRFLWVARGEA-----SRLKEIC-----GD-MGLV 327 (459)
T ss_pred CCceEEEeecccccCC--HHHHHHHHHHHHhCC------------CCEEEEEcCch-----hhHhHhc-----cC-CEEE
Confidence 3556788888653321 133444555555432 4666655 431 1122221 23 5777
Q ss_pred ccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEc-------CCCH
Q 004092 411 MAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFP-------KENI 478 (774)
Q Consensus 411 lG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg-~~G~Lv~-------~~d~ 478 (774)
.++. .-..+|...++-++-+. |--++++||+++|+|+|+-+..+ ....+.+. ..|+-+. .-+.
T Consensus 328 ~~w~-pQ~~iL~h~~v~~fvtH----gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~ 402 (459)
T PLN02448 328 VPWC-DQLKVLCHSSVGGFWTH----CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGR 402 (459)
T ss_pred eccC-CHHHHhccCccceEEec----CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcH
Confidence 7876 34457777776444332 33568899999999999966543 33444442 2365553 1368
Q ss_pred HHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHH
Q 004092 479 KALTHIILQVITNGKIS-PFARNIASIGRRSV 509 (774)
Q Consensus 479 e~La~aI~~Ll~d~~~~-~~r~~m~~~ar~~a 509 (774)
+++++++.+++.+ + +..++|.+++.+..
T Consensus 403 ~~l~~av~~vl~~---~~~~~~~~r~~a~~~~ 431 (459)
T PLN02448 403 EEIAELVKRFMDL---ESEEGKEMRRRAKELQ 431 (459)
T ss_pred HHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 9999999999987 4 33344544444333
No 148
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=94.05 E-value=0.25 Score=57.34 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCCEEEEEEeccccccccccc-HHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEE
Q 004092 332 PDDLVIAIVGTQFMYRGLWLE-HALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVK 409 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg-~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~ 409 (774)
.+..+.+.+|+.... ..+. ...+++|++.+. + ++++.- +.... .+++ ++.
T Consensus 275 ~~~vv~vsfGs~~~~--~~~~~~~~~~~~~~~~~----~--------~~iW~~~~~~~~-------------~l~~-n~~ 326 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSS--MPEEKLKEIAEAFENLP----Q--------RFIWKYEGEPPE-------------NLPK-NVL 326 (500)
T ss_dssp TTEEEEEE-TSSSTT---HHHHHHHHHHHHHCST----T--------EEEEEETCSHGC-------------HHHT-TEE
T ss_pred CCCEEEEecCcccch--hHHHHHHHHHHHHhhCC----C--------cccccccccccc-------------cccc-eEE
Confidence 455678888865421 1122 344555555443 3 555544 42110 2334 788
Q ss_pred EccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC--CHHHHHH
Q 004092 410 HMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKALTH 483 (774)
Q Consensus 410 flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~--d~e~La~ 483 (774)
...+..+ .++|+...+-++-+. |--++++||+.+|+|+|+-+.-+ ....+.+...|...+.. +.+++.+
T Consensus 327 ~~~W~PQ-~~lL~hp~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ 401 (500)
T PF00201_consen 327 IVKWLPQ-NDLLAHPRVKLFITH----GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRA 401 (500)
T ss_dssp EESS--H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHH
T ss_pred Eeccccc-hhhhhcccceeeeec----cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHH
Confidence 8888854 477776555444432 45678999999999999976543 33444444458877754 5788999
Q ss_pred HHHHHHHcCCCcHHHH
Q 004092 484 IILQVITNGKISPFAR 499 (774)
Q Consensus 484 aI~~Ll~d~~~~~~r~ 499 (774)
+|.++++| +..++
T Consensus 402 ai~~vl~~---~~y~~ 414 (500)
T PF00201_consen 402 AIREVLEN---PSYKE 414 (500)
T ss_dssp HHHHHHHS---HHHHH
T ss_pred HHHHHHhh---hHHHH
Confidence 99999999 64433
No 149
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.74 E-value=13 Score=40.93 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=63.4
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 333 ~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
...+++..|+.....|. .-.+...+.+..+.+++ .+++++||+.. . +..+++.+ ++.+ .+.+.|
T Consensus 175 ~~~i~i~pg~s~~~~K~-wp~e~~~~l~~~l~~~~---------~~Vvl~g~~~e-~--e~~~~i~~--~~~~-~~~l~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKR-WPLEHYAELAELLIAKG---------YQVVLFGGPDE-E--ERAEEIAK--GLPN-AVILAG 238 (334)
T ss_pred CCeEEEeccccccccCC-CCHHHHHHHHHHHHHCC---------CEEEEecChHH-H--HHHHHHHH--hcCC-ccccCC
Confidence 45567777723323222 34445555566666554 58899996622 1 45556666 3443 333666
Q ss_pred Cc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 413 ~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
.. .++..+++.||++|.+. +..+-=|-|.|+|+|+--
T Consensus 239 k~sL~e~~~li~~a~l~I~~D-------Sg~~HlAaA~~~P~I~iy 277 (334)
T COG0859 239 KTSLEELAALIAGADLVIGND-------SGPMHLAAALGTPTIALY 277 (334)
T ss_pred CCCHHHHHHHHhcCCEEEccC-------ChHHHHHHHcCCCEEEEE
Confidence 44 89999999999999774 334456889999999843
No 150
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=93.71 E-value=1 Score=51.79 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=57.5
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEc-CCCHHH
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFP-KENIKA 480 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg-~~G~Lv~-~~d~e~ 480 (774)
+..+.++..+. .+++..++-.+-+. |--++++||+++|+|+|+-+..+ ....+.+. ..|+-+. .-+.++
T Consensus 325 ~g~v~~w~PQ~-~iL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 325 RGYIVKWAPQK-EVLSHPAVGGFWSH----CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred CeEEEccCCHH-HHhCCCccCeeeec----CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 56666776433 36766555333331 22458899999999999965543 33444332 4576663 346889
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 004092 481 LTHIILQVITNGKISPFARNIASIGRRS 508 (774)
Q Consensus 481 La~aI~~Ll~d~~~~~~r~~m~~~ar~~ 508 (774)
++++|.+++.+ ++ .+++.+++++.
T Consensus 400 v~~av~~lm~~---~~-~~~~r~~a~~l 423 (451)
T PLN02410 400 VERAVKRLMVE---EE-GEEMRKRAISL 423 (451)
T ss_pred HHHHHHHHHcC---Cc-HHHHHHHHHHH
Confidence 99999999987 53 33444444433
No 151
>PLN02562 UDP-glycosyltransferase
Probab=93.71 E-value=1.1 Score=51.60 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=58.1
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEcCCCHHHH
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFPKENIKAL 481 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg-~~G~Lv~~~d~e~L 481 (774)
++.+.++. .-..+|+..++-++-+. |--++++||+.+|+|+|+-+..+ ....+.+. ..|+-+..-+.+++
T Consensus 329 ~~~v~~w~-PQ~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l 403 (448)
T PLN02562 329 QGKVVSWA-PQLEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEV 403 (448)
T ss_pred CEEEEecC-CHHHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHH
Confidence 67777877 33457777665444442 23568899999999999865443 33444432 34666655688999
Q ss_pred HHHHHHHHHcCCCcHHHHH
Q 004092 482 THIILQVITNGKISPFARN 500 (774)
Q Consensus 482 a~aI~~Ll~d~~~~~~r~~ 500 (774)
+++|.+++.+ ++.+++
T Consensus 404 ~~~v~~~l~~---~~~r~~ 419 (448)
T PLN02562 404 EEGLRKVMED---SGMGER 419 (448)
T ss_pred HHHHHHHhCC---HHHHHH
Confidence 9999999988 654443
No 152
>PLN02208 glycosyltransferase family protein
Probab=93.42 E-value=2.2 Score=48.98 Aligned_cols=95 Identities=8% Similarity=0.046 Sum_probs=61.7
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEEcC-----C
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFPK-----E 476 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~d-g~~G~Lv~~-----~ 476 (774)
++.+.++..+. ++|+...+-++-+. |--++++||+++|+|+|+-+..+ ...++.+ -..|+.+.. -
T Consensus 312 g~~v~~W~PQ~-~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 386 (442)
T PLN02208 312 GVVWGGWVQQP-LILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWF 386 (442)
T ss_pred CcEeeccCCHH-HHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcC
Confidence 56677776443 47777776555553 23568899999999999965542 3333333 234766643 2
Q ss_pred CHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHH
Q 004092 477 NIKALTHIILQVITNGKIS-PFARNIASIGRRSV 509 (774)
Q Consensus 477 d~e~La~aI~~Ll~d~~~~-~~r~~m~~~ar~~a 509 (774)
+.++++++|.+++++ + +..+++.+++++..
T Consensus 387 ~~~~l~~ai~~~m~~---~~e~g~~~r~~~~~~~ 417 (442)
T PLN02208 387 SKESLSNAIKSVMDK---DSDLGKLVRSNHTKLK 417 (442)
T ss_pred cHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 678999999999987 5 34455555555443
No 153
>PLN02210 UDP-glucosyl transferase
Probab=93.39 E-value=1.5 Score=50.72 Aligned_cols=80 Identities=9% Similarity=0.018 Sum_probs=53.0
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEEcC------
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFPK------ 475 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~d-g~~G~Lv~~------ 475 (774)
+..+.++..+. .+|+.+++-++-+.. | -++++||+++|+|+|+-+..+ ....+.+ -..|+.+..
T Consensus 325 ~g~v~~w~PQ~-~iL~h~~vg~FitH~---G-~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~ 399 (456)
T PLN02210 325 QGVVLEWSPQE-KILSHMAISCFVTHC---G-WNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399 (456)
T ss_pred CeEEEecCCHH-HHhcCcCcCeEEeeC---C-cccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCc
Confidence 34456777443 588888744443321 3 347889999999999965543 3344444 345766642
Q ss_pred CCHHHHHHHHHHHHHc
Q 004092 476 ENIKALTHIILQVITN 491 (774)
Q Consensus 476 ~d~e~La~aI~~Ll~d 491 (774)
-+.+++++++.+++.+
T Consensus 400 ~~~~~l~~av~~~m~~ 415 (456)
T PLN02210 400 LKVEEVERCIEAVTEG 415 (456)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3678999999999977
No 154
>PLN03004 UDP-glycosyltransferase
Probab=93.38 E-value=0.6 Score=53.73 Aligned_cols=80 Identities=16% Similarity=0.092 Sum_probs=56.9
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc----cccccccc-CccEEEEcC-----C
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDD-RVNGYLFPK-----E 476 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g----gi~EiV~d-g~~G~Lv~~-----~ 476 (774)
++.+.++..+. ++|+.+++-.+-+. |--++++||+++|+|+|+-+.. .....+.+ -..|+.++. -
T Consensus 335 g~~v~~W~PQ~-~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 409 (451)
T PLN03004 335 GMVVKSWAPQV-PVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFV 409 (451)
T ss_pred cEEEEeeCCHH-HHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCcc
Confidence 58888887443 48888998555443 2346889999999999996543 33445543 245777752 2
Q ss_pred CHHHHHHHHHHHHHc
Q 004092 477 NIKALTHIILQVITN 491 (774)
Q Consensus 477 d~e~La~aI~~Ll~d 491 (774)
+.++++++|.+++.+
T Consensus 410 ~~e~l~~av~~vm~~ 424 (451)
T PLN03004 410 SSTEVEKRVQEIIGE 424 (451)
T ss_pred CHHHHHHHHHHHhcC
Confidence 789999999999987
No 155
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=92.76 E-value=0.17 Score=56.24 Aligned_cols=108 Identities=14% Similarity=0.189 Sum_probs=77.6
Q ss_pred cHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc----cccccC-ccEEE-Ec------CCCHHHHHH
Q 004092 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR----KYVDDR-VNGYL-FP------KENIKALTH 483 (774)
Q Consensus 416 dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~----EiV~dg-~~G~L-v~------~~d~e~La~ 483 (774)
|..++...|++.|+||++| -+|.+..|+-.+|+|-|+|+..|.. |.|+|. ..|+. ++ .+++++|++
T Consensus 493 DYeeFVRGCHLGVFPSYYE--PWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~ 570 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYE--PWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLAS 570 (692)
T ss_pred CHHHHhccccccccccccC--CCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHH
Confidence 5678899999999999999 4999999999999999999998864 555443 23543 33 245677888
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHH-HHHH-hcCHHHHHHHHHHHHHHHh
Q 004092 484 IILQVITNGKISPFARNIASIGR-RSVK-NLMALETIEGYAMLLENVL 529 (774)
Q Consensus 484 aI~~Ll~d~~~~~~r~~m~~~ar-~~ak-~fs~~~~a~~y~~L~e~ll 529 (774)
-|...... .+++++-+..+ +... -.+|..+..-|.+.=.-.+
T Consensus 571 ~m~~F~~q----sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 571 FMYEFCKQ----SRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred HHHHHHHH----HHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 88777765 45665554433 3343 3789988887776544333
No 156
>PLN02764 glycosyltransferase family protein
Probab=92.39 E-value=4.7 Score=46.49 Aligned_cols=113 Identities=11% Similarity=0.032 Sum_probs=65.4
Q ss_pred EEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEEcC-----CC
Q 004092 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFPK-----EN 477 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~d-g~~G~Lv~~-----~d 477 (774)
+...++..+ .++++...+.++-+. |--++++||+++|+|+|+-+..+ ....+.+ -..|+-+.. -+
T Consensus 319 ~v~~~W~PQ-~~vL~h~~v~~FvtH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQQ-PLILSHPSVGCFVSH----CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCCH-HHHhcCcccCeEEec----CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccC
Confidence 555566633 346666545333332 23568899999999999976543 3344533 234655422 27
Q ss_pred HHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHH
Q 004092 478 IKALTHIILQVITNGKIS-PFARNIASIGRRSVKNL----MALETIEGYAMLLENV 528 (774)
Q Consensus 478 ~e~La~aI~~Ll~d~~~~-~~r~~m~~~ar~~ak~f----s~~~~a~~y~~L~e~l 528 (774)
.+++.+++.+++++ + +..+++.+++++..+.. +.....+.+.+.+.+.
T Consensus 394 ~e~i~~av~~vm~~---~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 394 KESLRDAINSVMKR---DSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 89999999999987 5 44455555555443322 3333444444444443
No 157
>PLN02173 UDP-glucosyl transferase family protein
Probab=92.06 E-value=1.7 Score=49.99 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=60.9
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEcC------
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFPK------ 475 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg-~~G~Lv~~------ 475 (774)
++.+.++..+ .++|+...+-++-+. +--++++||+++|+|+|+-+..+ ...++.+. ..|+-+..
T Consensus 318 ~~~i~~W~PQ-~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~ 392 (449)
T PLN02173 318 KSLVLKWSPQ-LQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGI 392 (449)
T ss_pred ceEEeCCCCH-HHHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCc
Confidence 6888888754 358888775555553 23578899999999999976543 33455442 34655532
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 004092 476 ENIKALTHIILQVITNGKISPFARNIASIGRRS 508 (774)
Q Consensus 476 ~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ 508 (774)
-+.+++++++.+++.+ ++ .++|.+++++.
T Consensus 393 ~~~e~v~~av~~vm~~---~~-~~~~r~~a~~~ 421 (449)
T PLN02173 393 AKREEIEFSIKEVMEG---EK-SKEMKENAGKW 421 (449)
T ss_pred ccHHHHHHHHHHHhcC---Ch-HHHHHHHHHHH
Confidence 1679999999999987 43 23444444433
No 158
>PLN03007 UDP-glucosyltransferase family protein
Probab=91.92 E-value=3.8 Score=47.66 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=52.4
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----cccccc-CccEEEE--------
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDD-RVNGYLF-------- 473 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~EiV~d-g~~G~Lv-------- 473 (774)
++...++..+ ..+|+.+++-++-+. |--++++||+++|+|+|+-+..+- ..++.+ -..|+-+
T Consensus 346 g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 420 (482)
T PLN03007 346 GLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKV 420 (482)
T ss_pred CEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccc
Confidence 6888888855 468888877444332 235688999999999999765432 222211 1123322
Q ss_pred --cCCCHHHHHHHHHHHHHc
Q 004092 474 --PKENIKALTHIILQVITN 491 (774)
Q Consensus 474 --~~~d~e~La~aI~~Ll~d 491 (774)
+.-+.++++++|.+++.+
T Consensus 421 ~~~~~~~~~l~~av~~~m~~ 440 (482)
T PLN03007 421 KGDFISREKVEKAVREVIVG 440 (482)
T ss_pred ccCcccHHHHHHHHHHHhcC
Confidence 123688999999999987
No 159
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=90.81 E-value=3.7 Score=47.37 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=52.9
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc----ccccccccC-ccEEEEc-----CC
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDR-VNGYLFP-----KE 476 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g----gi~EiV~dg-~~G~Lv~-----~~ 476 (774)
+..+.++..+ .++|+..++-++-+. |--++++||+.+|+|+|+-+.. .....+.+. ..|+-+. .-
T Consensus 328 ~g~v~~W~PQ-~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 402 (455)
T PLN02152 328 VGMIVSWCSQ-IEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLV 402 (455)
T ss_pred CeEEEeeCCH-HHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcC
Confidence 5666787754 347888776555553 2356889999999999996544 233344331 1244442 12
Q ss_pred CHHHHHHHHHHHHHc
Q 004092 477 NIKALTHIILQVITN 491 (774)
Q Consensus 477 d~e~La~aI~~Ll~d 491 (774)
+.+++++++.+++++
T Consensus 403 ~~e~l~~av~~vm~~ 417 (455)
T PLN02152 403 ERGEIRRCLEAVMEE 417 (455)
T ss_pred cHHHHHHHHHHHHhh
Confidence 678999999999977
No 160
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=90.65 E-value=7.7 Score=45.06 Aligned_cols=77 Identities=8% Similarity=0.030 Sum_probs=50.7
Q ss_pred cEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc----cccccccc-CccEEEEcC----
Q 004092 407 VVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDD-RVNGYLFPK---- 475 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g----gi~EiV~d-g~~G~Lv~~---- 475 (774)
.+.+.++..+ ..+|.. +++||.- |--++++||+++|+|+|+-+.. .....+.+ -..|+-+..
T Consensus 344 g~~v~~w~PQ-~~vL~h~~v~~fvtH------~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~ 416 (477)
T PLN02863 344 GLVIRGWAPQ-VAILSHRAVGAFLTH------CGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADT 416 (477)
T ss_pred CEEecCCCCH-HHHhcCCCcCeEEec------CCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCC
Confidence 5778888854 557775 4555533 2345889999999999996544 23334333 245665521
Q ss_pred -CCHHHHHHHHHHHHH
Q 004092 476 -ENIKALTHIILQVIT 490 (774)
Q Consensus 476 -~d~e~La~aI~~Ll~ 490 (774)
-+.+++++++.+++.
T Consensus 417 ~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 417 VPDSDELARVFMESVS 432 (477)
T ss_pred CcCHHHHHHHHHHHhh
Confidence 257899999999884
No 161
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=90.26 E-value=11 Score=45.52 Aligned_cols=143 Identities=12% Similarity=0.043 Sum_probs=80.3
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HH---HHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHc---
Q 004092 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-IL---RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNL--- 401 (774)
Q Consensus 330 l~~~~~vIl~vGsrl~~~KgiKg~~l-LL---eA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~l--- 401 (774)
++++...++++- |+..- |...+ ++ +-+.+|++ .|+ ....++.+++.| ..........+.+++.+.
T Consensus 440 ldp~slfdv~~r-R~heY---KRq~LniL~ii~~y~rik~-~p~--~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~ 512 (713)
T PF00343_consen 440 LDPDSLFDVQAR-RFHEY---KRQLLNILHIIDRYNRIKN-NPN--KKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEV 512 (713)
T ss_dssp --TTSEEEEEES--SCCC---CTHHHHHHHHHHHHHHHHH-STT--SCCS-EEEEEE----TT-HHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhhhh-hcccc---cccCcccccHHHHHHHHHh-ccc--CCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 456776666665 66665 88877 33 34444443 332 334558888888 322322233444443322
Q ss_pred -----CCCC-ccEEEcc-Cc-ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccccccc--CccEE
Q 004092 402 -----HYPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNGY 471 (774)
Q Consensus 402 -----gL~~-~~V~flG-~~-~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d--g~~G~ 471 (774)
.+.+ .+|.|+. +. +-...++.+|||-...|...-+..|..-+-||.-|.+.++|--|...|+.+. .+|.+
T Consensus 513 in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~f 592 (713)
T PF00343_consen 513 INNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIF 592 (713)
T ss_dssp HCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSE
T ss_pred HhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEE
Confidence 2222 1477776 33 5566789999999987753333567777999999999999999998888743 45788
Q ss_pred EEcCCCHHH
Q 004092 472 LFPKENIKA 480 (774)
Q Consensus 472 Lv~~~d~e~ 480 (774)
+|-. ++++
T Consensus 593 iFG~-~~~e 600 (713)
T PF00343_consen 593 IFGL-TAEE 600 (713)
T ss_dssp EES--BHHH
T ss_pred EcCC-CHHH
Confidence 8754 3444
No 162
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=90.06 E-value=2.5 Score=44.98 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCC-CCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEc
Q 004092 352 EHALILRALLPLFSEVSVENESNSPIKVMILSGDS-TSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYG 430 (774)
Q Consensus 352 g~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~-~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~P 430 (774)
....+++.+..+.+..|+ .+++|==-|. ...... ..+.+..+.. ++.+....-++.+++..||.++.-
T Consensus 138 ~~~~~~~~l~~~~~~~p~-------~~lvvK~HP~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Ll~~s~~Vvti 206 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPD-------AKLVVKPHPDERGGNKY--SYLEELPNLP--NVVIIDDDVNLYELLEQSDAVVTI 206 (269)
T ss_pred cHhHHHHHHHHHHHHCCC-------CEEEEEECchhhCCCCh--hHhhhhhcCC--CeEEECCCCCHHHHHHhCCEEEEE
Confidence 344556667777777776 7777655331 111001 1122222344 366665556899999999999976
Q ss_pred CccCcCCccHHHHHHHHcCCCEEEcCC
Q 004092 431 SFLEEQTFPEILVKALCFRKPIIAPDL 457 (774)
Q Consensus 431 S~~E~qGfp~~llEAMA~G~PVIatd~ 457 (774)
+ +.+-+|||.+|+|||+...
T Consensus 207 n-------StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 207 N-------STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred C-------CHHHHHHHHcCCceEEecC
Confidence 4 5578899999999999643
No 163
>PLN00414 glycosyltransferase family protein
Probab=89.77 E-value=7 Score=45.02 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=59.6
Q ss_pred EEEccCcccHHHHHHHcCE--EEEcCccCcCCccHHHHHHHHcCCCEEEcCCc----ccccccc-cCccEEEEcC-----
Q 004092 408 VKHMAAEGDVDSVLNTADV--VIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVD-DRVNGYLFPK----- 475 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI--~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g----gi~EiV~-dg~~G~Lv~~----- 475 (774)
..+.++..+ ..+|+.+.+ ||.-. --++++||+++|+|+|+-+.. ....++. .-..|+.+..
T Consensus 314 ~vv~~w~PQ-~~vL~h~~v~~fvtH~------G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVEQ-PLILSHPSVGCFVNHC------GFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCCH-HHHhcCCccceEEecC------chhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 455566633 346766644 55332 246889999999999996554 2334453 3345766642
Q ss_pred CCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHH
Q 004092 476 ENIKALTHIILQVITNGKIS-PFARNIASIGRRSVK 510 (774)
Q Consensus 476 ~d~e~La~aI~~Ll~d~~~~-~~r~~m~~~ar~~ak 510 (774)
-+.+++++++.+++.+ + +..+++.+++++..+
T Consensus 387 ~~~~~i~~~v~~~m~~---~~e~g~~~r~~a~~~~~ 419 (446)
T PLN00414 387 FSKESLRDTVKSVMDK---DSEIGNLVKRNHKKLKE 419 (446)
T ss_pred cCHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHHH
Confidence 3789999999999987 4 345556666655543
No 164
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=89.56 E-value=3 Score=50.31 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=86.7
Q ss_pred CCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHH----HHHHHcCCCC
Q 004092 331 KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIE----AIAHNLHYPL 405 (774)
Q Consensus 331 ~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~----~la~~lgL~~ 405 (774)
.++..+++++= |+..- |.+.+.+.-+..+.....+ +..+.+.+++.| ......+...+. ..++..+...
T Consensus 484 ~p~~lfd~~~k-RiheY---KRq~Lnl~~i~~ly~~i~~--d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~l 557 (750)
T COG0058 484 DPNALFDGQAR-RIHEY---KRQLLNLLDIERLYRILKE--DWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKL 557 (750)
T ss_pred CCCcceeeeeh-hhhhh---hhhHHhHhhHHHHHHHHhc--CCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccc
Confidence 45565666666 65554 7776665544444332211 122336777777 322222223333 3344444444
Q ss_pred ccEEEcc-Cc-ccHHHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCcccccccc--cCccEEEEcC
Q 004092 406 GVVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVD--DRVNGYLFPK 475 (774)
Q Consensus 406 ~~V~flG-~~-~dl~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~--dg~~G~Lv~~ 475 (774)
+|.|+. +. +-...++.+|||-..-|. .| ..|..=|-||.-|.+.|+|--|...|+.+ ++.||+++-.
T Consensus 558 -kVvFl~nYdvslA~~iipa~Dvweqis~a~~E--ASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~ 630 (750)
T COG0058 558 -KVVFLPNYDVSLAELLIPAADVWEQIPTAGKE--ASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGE 630 (750)
T ss_pred -eEEEeCCCChhHHHhhcccccccccCCCCCcc--ccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCC
Confidence 677776 33 555668999999988774 45 45666689999999999999999999986 8899999975
No 165
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.31 E-value=0.94 Score=40.52 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=53.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHcCCCCccEEE---ccCc-c--cHHHHHHHcCEEEEcCccC-cCCccHHHHHHHHcCCC
Q 004092 379 VMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH---MAAE-G--DVDSVLNTADVVIYGSFLE-EQTFPEILVKALCFRKP 451 (774)
Q Consensus 379 LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~f---lG~~-~--dl~~~l~aaDI~V~PS~~E-~qGfp~~llEAMA~G~P 451 (774)
++|+||... +...+++.++++|... +.+ -|.. . .++..+..||++|++...- ....-.+--+|-..|+|
T Consensus 2 vliVGG~~~--~~~~~~~~~~~~G~~~--~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 2 VLIVGGRED--RERRYKRILEKYGGKL--IHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred EEEEcCCcc--cHHHHHHHHHHcCCEE--EEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCc
Confidence 678997222 2266778888888865 555 2222 3 3888999999999887322 10233444567788999
Q ss_pred EEEcCCcccccc
Q 004092 452 IIAPDLSNIRKY 463 (774)
Q Consensus 452 VIatd~ggi~Ei 463 (774)
++.++..+...+
T Consensus 78 ~~~~~~~~~~~l 89 (97)
T PF10087_consen 78 IIYSRSRGVSSL 89 (97)
T ss_pred EEEECCCCHHHH
Confidence 999986666544
No 166
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=88.04 E-value=2.6 Score=49.08 Aligned_cols=150 Identities=14% Similarity=0.175 Sum_probs=98.4
Q ss_pred EEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccC-
Q 004092 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA- 413 (774)
Q Consensus 335 ~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~- 413 (774)
...+..|..... |++-+..++++.+.. + ++-.|.+.+.... .++. .|.-.|.
T Consensus 278 ~~AlVyGK~~~~---w~~k~~~l~~l~~~~----e-------ih~tV~~~~~~~~------------~~P~-~V~NHG~l 330 (559)
T PF15024_consen 278 NQALVYGKERYM---WKGKEKYLDVLHKYM----E-------IHGTVYDEPQRPP------------NVPS-FVKNHGIL 330 (559)
T ss_pred ceeEEEccchhh---hcCcHHHHHHHHhhc----E-------EEEEeccCCCCCc------------ccch-hhhhcCcC
Confidence 355666633332 467766677775543 2 5666655332111 3444 4555563
Q ss_pred -cccHHHHHHHcCEEEEcC-ccCcCCccHHHHHHHHcCCCEEEcCCccc---------------cc----------cccc
Q 004092 414 -EGDVDSVLNTADVVIYGS-FLEEQTFPEILVKALCFRKPIIAPDLSNI---------------RK----------YVDD 466 (774)
Q Consensus 414 -~~dl~~~l~aaDI~V~PS-~~E~qGfp~~llEAMA~G~PVIatd~ggi---------------~E----------iV~d 466 (774)
..++..++..+.+||=.. -.| |-+.+||+|.|+|.|-+..... ++ .|.
T Consensus 331 ~~~ef~~lL~~akvfiGlGfP~E----gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG- 405 (559)
T PF15024_consen 331 SGDEFQQLLRKAKVFIGLGFPYE----GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIG- 405 (559)
T ss_pred CHHHHHHHHHhhhEeeecCCCCC----CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCC-
Confidence 379999999999999433 334 5688999999999987653211 11 121
Q ss_pred CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 004092 467 RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLENV 528 (774)
Q Consensus 467 g~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~l 528 (774)
.-.-|.|+.+|.+++-+||.+++++ +. .-+. -+|+.+.|.++...+++.-
T Consensus 406 ~PhVytVd~~n~~~v~~Avk~il~~---~v---------~Py~P~efT~egmLeRv~~~ie~q 456 (559)
T PF15024_consen 406 EPHVYTVDINNSTEVEAAVKAILAT---PV---------EPYLPYEFTCEGMLERVNALIEKQ 456 (559)
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHhc---CC---------CCcCCcccCHHHHHHHHHHHHHhh
Confidence 2246889999999999999999998 32 1233 5689999999988888764
No 167
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=88.00 E-value=3.6 Score=45.45 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=65.7
Q ss_pred HHHHhCCC-CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcC
Q 004092 324 VRVKMGFK-PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLH 402 (774)
Q Consensus 324 lR~~lgl~-~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lg 402 (774)
....+++. ++..+++..|+...+.|.|. .+...+.+..+.+. . ++++++||+.+. +..+++.+.++
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp-~e~~a~l~~~l~~~--~-------~~vvl~Gg~~e~---~~~~~i~~~~~ 236 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWP-HYHYAELAQQLIDE--G-------YQVVLFGSAKDH---EAGNEILAALN 236 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCC-HHHHHHHHHHHHHC--C-------CeEEEEeCHHhH---HHHHHHHHhcc
Confidence 34445544 44567778876543444443 33334444444422 3 788899976542 23344444332
Q ss_pred CC--CccEEEccC--cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 403 YP--LGVVKHMAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 403 L~--~~~V~flG~--~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
-. ...+.+.|. ..++..+++.||++|..- +..+-=|-|.|+|+|+
T Consensus 237 ~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nD-------TGp~HlAaA~g~P~va 285 (348)
T PRK10916 237 TEQQAWCRNLAGETQLEQAVILIAACKAIVTND-------SGLMHVAAALNRPLVA 285 (348)
T ss_pred cccccceeeccCCCCHHHHHHHHHhCCEEEecC-------ChHHHHHHHhCCCEEE
Confidence 11 102456664 388999999999999663 3345568899999997
No 168
>PLN00164 glucosyltransferase; Provisional
Probab=87.66 E-value=16 Score=42.44 Aligned_cols=95 Identities=9% Similarity=-0.036 Sum_probs=58.5
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----ccccc-ccCccEEEEcC------
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYV-DDRVNGYLFPK------ 475 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV-~dg~~G~Lv~~------ 475 (774)
.+.+.++. .-..+|+.+++-.+-+.. | -++++||+++|+|+|+-+..+ ....+ +.-..|+-+..
T Consensus 340 g~~v~~w~-PQ~~iL~h~~vg~fvtH~---G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~ 414 (480)
T PLN00164 340 GLVWPTWA-PQKEILAHAAVGGFVTHC---G-WNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDN 414 (480)
T ss_pred CeEEeecC-CHHHHhcCcccCeEEeec---c-cchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCC
Confidence 35566766 334577777754444421 3 458899999999999965432 33333 33234766532
Q ss_pred -CCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHH
Q 004092 476 -ENIKALTHIILQVITNGKISP-FARNIASIGRRSV 509 (774)
Q Consensus 476 -~d~e~La~aI~~Ll~d~~~~~-~r~~m~~~ar~~a 509 (774)
-+.++++++|.+++.+ ++ ..++|.+++++..
T Consensus 415 ~~~~e~l~~av~~vm~~---~~~~~~~~r~~a~~~~ 447 (480)
T PLN00164 415 FVEAAELERAVRSLMGG---GEEEGRKAREKAAEMK 447 (480)
T ss_pred cCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 2579999999999987 43 2444555544444
No 169
>PLN02555 limonoid glucosyltransferase
Probab=87.50 E-value=14 Score=43.03 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=51.7
Q ss_pred cEEEccCcccHHHHH--HHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccC-ccEEEEc-----
Q 004092 407 VVKHMAAEGDVDSVL--NTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFP----- 474 (774)
Q Consensus 407 ~V~flG~~~dl~~~l--~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg-~~G~Lv~----- 474 (774)
++.+.++..+ ..+| .++.+||.-. | -++++||+.+|+|+|+-+..+ ...++.+. ..|+-+.
T Consensus 338 ~g~v~~W~PQ-~~iL~H~~v~~FvtH~-----G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~ 410 (480)
T PLN02555 338 KGKIVQWCPQ-EKVLAHPSVACFVTHC-----G-WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAE 410 (480)
T ss_pred ceEEEecCCH-HHHhCCCccCeEEecC-----C-cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccc
Confidence 6777787744 4466 4455566432 2 458899999999999976543 23334443 4466652
Q ss_pred C--CCHHHHHHHHHHHHHc
Q 004092 475 K--ENIKALTHIILQVITN 491 (774)
Q Consensus 475 ~--~d~e~La~aI~~Ll~d 491 (774)
. -+.++++++|.+++.+
T Consensus 411 ~~~v~~~~v~~~v~~vm~~ 429 (480)
T PLN02555 411 NKLITREEVAECLLEATVG 429 (480)
T ss_pred cCcCcHHHHHHHHHHHhcC
Confidence 1 2578999999999976
No 170
>PLN02167 UDP-glycosyltransferase family protein
Probab=87.43 E-value=12 Score=43.59 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=49.6
Q ss_pred cEEEccCcccHHHHHHHcC--EEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccc-cccCccEEEEcC----
Q 004092 407 VVKHMAAEGDVDSVLNTAD--VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKY-VDDRVNGYLFPK---- 475 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaD--I~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~Ei-V~dg~~G~Lv~~---- 475 (774)
+..+.++.. -..+|+... +||.=. | -++++||+++|+|+|+-+..+ .... +..-..|+.+..
T Consensus 341 rg~v~~w~P-Q~~iL~h~~vg~fvtH~-----G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 413 (475)
T PLN02167 341 RGLVCGWAP-QVEILAHKAIGGFVSHC-----G-WNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVS 413 (475)
T ss_pred CeeeeccCC-HHHHhcCcccCeEEeeC-----C-cccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccc
Confidence 455667763 334666544 555432 2 347899999999999865442 2222 333334766532
Q ss_pred -----CCHHHHHHHHHHHHHc
Q 004092 476 -----ENIKALTHIILQVITN 491 (774)
Q Consensus 476 -----~d~e~La~aI~~Ll~d 491 (774)
-+.++++++|.+++.+
T Consensus 414 ~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 414 AYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred ccCCcccHHHHHHHHHHHhcC
Confidence 2688999999999976
No 171
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=87.09 E-value=39 Score=34.70 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=31.5
Q ss_pred CcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC
Q 004092 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (774)
Q Consensus 413 ~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ 457 (774)
...++..+++.||++|....+ ..+=|+++|+|+|+-++
T Consensus 247 ~~~~~~~~~~~~~~~Is~RlH-------~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 247 SPDELLELISQADLVISMRLH-------GAILALSLGVPVIAISY 284 (286)
T ss_pred CHHHHHHHHhcCCEEEecCCH-------HHHHHHHcCCCEEEEec
Confidence 338899999999999988766 35789999999998654
No 172
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=86.53 E-value=3.2 Score=43.22 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=58.4
Q ss_pred CCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEE
Q 004092 331 KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (774)
Q Consensus 331 ~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~f 410 (774)
.++..+++..|+.. ..|.| ..+...+.+..+.+.+ ..++++|++... ..+..+.+.+ ++++..+.+
T Consensus 103 ~~~~~i~i~~~a~~-~~k~w-p~e~~~~l~~~l~~~~---------~~vvl~g~~~~~-~~~~~~~~~~--~~~~~~~~~ 168 (247)
T PF01075_consen 103 KDKPYIGINPGASW-PSKRW-PAEKWAELIERLKERG---------YRVVLLGGPEEQ-EKEIADQIAA--GLQNPVINL 168 (247)
T ss_dssp TTSSEEEEE---SS-GGGS---HHHHHHHHHHHCCCT----------EEEE--SSHHH-HHHHHHHHHT--THTTTTEEE
T ss_pred ccCCeEEEeecCCC-ccccC-CHHHHHHHHHHHHhhC---------ceEEEEccchHH-HHHHHHHHHH--hcccceEee
Confidence 45566777888544 44333 3344556666665543 578888865431 1133334444 333225788
Q ss_pred ccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 411 MAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 411 lG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
.|.. .++..+++.||++|.+- +..+-=|.|+|+|+|+-
T Consensus 169 ~~~~~l~e~~ali~~a~~~I~~D-------tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 169 AGKTSLRELAALISRADLVIGND-------TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TTTS-HHHHHHHHHTSSEEEEES-------SHHHHHHHHTT--EEEE
T ss_pred cCCCCHHHHHHHHhcCCEEEecC-------ChHHHHHHHHhCCEEEE
Confidence 8844 88899999999999774 34556788999999984
No 173
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=86.49 E-value=5.3 Score=44.24 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 333 ~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
+..+++..|+.. +.|.|. .+...+.+..|.+. . .+++++||+..++. +..+++++...... .+.+.|
T Consensus 183 ~~~i~i~pga~~-~~K~Wp-~e~fa~l~~~L~~~--~-------~~vvl~ggp~e~e~-~~~~~i~~~~~~~~-~~~l~g 249 (352)
T PRK10422 183 QNYVVIQPTARQ-IFKCWD-NDKFSAVIDALQAR--G-------YEVVLTSGPDKDDL-ACVNEIAQGCQTPP-VTALAG 249 (352)
T ss_pred CCeEEEecCCCc-cccCCC-HHHHHHHHHHHHHC--C-------CeEEEEcCCChHHH-HHHHHHHHhcCCCc-cccccC
Confidence 466778888543 445553 33445555555432 2 68889987643221 22344444322223 355677
Q ss_pred Cc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 413 ~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
.. .++..+++.||++|..- +..+-=|-|+|+|+|+-
T Consensus 250 ~~sL~el~ali~~a~l~v~nD-------SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 250 KTTFPELGALIDHAQLFIGVD-------SAPAHIAAAVNTPLICL 287 (352)
T ss_pred CCCHHHHHHHHHhCCEEEecC-------CHHHHHHHHcCCCEEEE
Confidence 43 89999999999999663 34455677899999984
No 174
>PRK14986 glycogen phosphorylase; Provisional
Probab=86.29 E-value=3.2 Score=50.60 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=90.5
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHHHHHHchh--hcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCC--
Q 004092 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHY-- 403 (774)
Q Consensus 330 l~~~~~vIl~vGsrl~~~KgiKg~~l-LLeA~~~L~~--~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL-- 403 (774)
++++...++++= |+..- |...+ ++..+..+.+ ..|+ ..-.+..+++.| ..........+.+++..+.-
T Consensus 539 ldp~sLfd~qak-R~heY---KRq~LNil~~i~ry~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~i 612 (815)
T PRK14986 539 VNPKALFDVQIK-RIHEY---KRQLMNVLHVITRYNRIKADPD--AKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVI 612 (815)
T ss_pred cCcccceeeeeh-hhhhh---hhhhHHHhhhHHHHHHHHhCCC--cCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 445554555555 66665 88888 6666554432 2232 112357888888 32232223333333332110
Q ss_pred -----CCc--cEEEcc-Cc-ccHHHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCccccccccc--CccE
Q 004092 404 -----PLG--VVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNG 470 (774)
Q Consensus 404 -----~~~--~V~flG-~~-~dl~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d--g~~G 470 (774)
-.+ +|.|+. +. +-...++.+||+-..-|. .| .-|..=+-||.-|.+.++|--|...|+.++ ++||
T Consensus 613 n~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~E--ASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~ 690 (815)
T PRK14986 613 NNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTE--ASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENI 690 (815)
T ss_pred ccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCcc--ccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcE
Confidence 011 466765 33 556678999999998774 45 445556899999999999999999998876 7899
Q ss_pred EEEcCCCHHHHHH
Q 004092 471 YLFPKENIKALTH 483 (774)
Q Consensus 471 ~Lv~~~d~e~La~ 483 (774)
+++-. +++++.+
T Consensus 691 ~~fG~-~~~ev~~ 702 (815)
T PRK14986 691 FIFGN-TAEEVEA 702 (815)
T ss_pred EEeCC-CHHHHHH
Confidence 99975 5555544
No 175
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=86.09 E-value=21 Score=41.60 Aligned_cols=80 Identities=10% Similarity=-0.048 Sum_probs=54.2
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----ccccc-ccCccEEEEcC----CC
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYV-DDRVNGYLFPK----EN 477 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV-~dg~~G~Lv~~----~d 477 (774)
.+.+.++..+ .++++...+-.+-+. |--++++||+.+|+|+|+-+..+ ....+ +.-..|+-++. -+
T Consensus 339 g~vv~~W~PQ-~~iL~h~~vg~FitH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAPQ-AEILAHQAVGGFLTH----CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCCH-HHHhCCcccCeeEec----CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 4777787743 347777776444332 23568899999999999976553 23344 23334766643 36
Q ss_pred HHHHHHHHHHHHHc
Q 004092 478 IKALTHIILQVITN 491 (774)
Q Consensus 478 ~e~La~aI~~Ll~d 491 (774)
.++++++|.+++.+
T Consensus 414 ~~~l~~av~~vm~~ 427 (481)
T PLN02992 414 RSKIEALVRKVMVE 427 (481)
T ss_pred HHHHHHHHHHHhcC
Confidence 78999999999976
No 176
>PLN02554 UDP-glycosyltransferase family protein
Probab=85.26 E-value=7.4 Score=45.29 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=48.9
Q ss_pred cEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cc-cccccCccEEEEcC----
Q 004092 407 VVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IR-KYVDDRVNGYLFPK---- 475 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~-EiV~dg~~G~Lv~~---- 475 (774)
++.+.++.. -..+|+ ++.+||.= |--++++||+.+|+|+|+-+..+ .. ..++.-..|..++.
T Consensus 343 ~g~v~~W~P-Q~~iL~H~~v~~FvtH------~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~ 415 (481)
T PLN02554 343 IGKVIGWAP-QVAVLAKPAIGGFVTH------CGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRG 415 (481)
T ss_pred CceEEeeCC-HHHHhCCcccCccccc------CccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccc
Confidence 566667764 334663 44445532 23568899999999999976542 22 22333234665531
Q ss_pred ---------CCHHHHHHHHHHHHH
Q 004092 476 ---------ENIKALTHIILQVIT 490 (774)
Q Consensus 476 ---------~d~e~La~aI~~Ll~ 490 (774)
-+.++++++|.+++.
T Consensus 416 ~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 416 DLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred cccccccCeEcHHHHHHHHHHHhc
Confidence 268899999999997
No 177
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=85.06 E-value=68 Score=35.64 Aligned_cols=331 Identities=13% Similarity=0.140 Sum_probs=175.8
Q ss_pred CCCCChHHHHHHHHHHHHHHcC--CeEEEEEcCCCc---chhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCchh
Q 004092 153 DLLIDPQQLQMVTIAIALREIG--YAIQVYSLEDGR---AHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAK 227 (774)
Q Consensus 153 ~L~~GG~e~~v~~Lak~L~~~G--~eV~V~t~~~~~---~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~~ 227 (774)
+++..|.-.-+.-|+..|++.. ++|.++..++.+ ....|...++++... ...+ .+.||++=-+....
T Consensus 14 siW~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~lDVlIEmg~ql~ 85 (364)
T PF10933_consen 14 SIWENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIPAALMLDLLDVPLVDF------DDAI--DELDVLIEMGAQLD 85 (364)
T ss_pred chhhhchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCCcccccccCCCceecH------HHhc--ccCCEEEEccCccC
Confidence 3556788888999999999876 688888876542 122334444443222 2222 37899887665443
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhh-hHHHHHHHHHHHhcc-EEEccCCc--chhhcccCCCCCEEEe
Q 004092 228 VVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQ-LELLNDWKKVFNRAT-VVVFPDYV--LPMMYSAFDAGNYYVI 303 (774)
Q Consensus 228 ~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~-~~li~~~~~~~~~a~-~vv~ps~~--~~~i~~~v~~~ki~vI 303 (774)
.-....+ +..|.|+|....|+......+..+.... ..++.. ...+ +..+|+.. ..-....+....+.++
T Consensus 86 ~~~~~~~--~~~G~KvV~y~~GndYv~~~E~~lF~k~~~~~f~~-----~~yD~VW~lPq~~~~~~~yl~~l~r~Pv~~v 158 (364)
T PF10933_consen 86 PEWLDYM--RARGGKVVSYRCGNDYVMDIESMLFNKPSGHLFNG-----APYDEVWTLPQFENTCAPYLETLHRCPVRVV 158 (364)
T ss_pred HHHHHHH--HHcCCeEEEEeCCchHHHHhhHHhcCCCCCccCCC-----CCCceeEeccchhhhchHHHHHHhcCCceee
Confidence 3333334 2467899999998554433333222111 111000 0001 11222211 0011112223445566
Q ss_pred CCCCCCcccccccCchhhHHHH---HHhCCCCC--CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeE
Q 004092 304 PGSPAKAWEADTNMDLYNDTVR---VKMGFKPD--DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIK 378 (774)
Q Consensus 304 pg~gvd~~~~~~~~~~~k~~lR---~~lgl~~~--~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~ 378 (774)
|- +|...++... ...+. .++|..+. ...|..+=..+.--|----..+++|++- ...|+ .+.
T Consensus 159 P~----iWsP~F~~~~-~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aY---R~~P~------~v~ 224 (364)
T PF10933_consen 159 PH----IWSPRFLDQR-IAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAY---RADPD------AVE 224 (364)
T ss_pred Cc----cCCchhHHHH-HHhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHH---HhChh------hcc
Confidence 62 1111111110 11111 13344431 1122222111111100011223344443 34444 266
Q ss_pred EEEEeCCCCCchHHHHHHHHHHcCC-CCccEEEccCcccHHHHHHH-cCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 379 VMILSGDSTSNYSVVIEAIAHNLHY-PLGVVKHMAAEGDVDSVLNT-ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 379 LvIvGG~~~e~Y~~~L~~la~~lgL-~~~~V~flG~~~dl~~~l~a-aDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
.+.+.....-+-...+..++..+.+ .++...|.|.. +++.+++. .|++| .-.||. +.-..-.||+--|=|.|-.
T Consensus 225 ~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~Vv-SHqWeN-~lNYlY~daLyggYPLVHN- 300 (364)
T PF10933_consen 225 HVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVV-SHQWEN-PLNYLYYDALYGGYPLVHN- 300 (364)
T ss_pred eEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEE-eccccc-hhhHHHHHHHhcCCCcccC-
Confidence 6666621111112566777887776 44578888865 77888775 56665 446765 7788899999999998863
Q ss_pred CcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHH--HHHHHHHHH
Q 004092 457 LSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL--ETIEGYAML 524 (774)
Q Consensus 457 ~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~--~~a~~y~~L 524 (774)
..++.| .|+..+..|+.+=++++.+.+.+. +...+...+.+++....++.. ..+..|.+.
T Consensus 301 ----S~~l~d--~GYYY~~fD~~~G~r~L~~A~~~H--D~~~~~Y~~ra~~~l~~~~p~n~~nv~~y~~~ 362 (364)
T PF10933_consen 301 ----SPLLKD--VGYYYPDFDAFEGARQLLRAIREH--DADLDAYRARARRLLDRLSPENPANVRAYEAR 362 (364)
T ss_pred ----cchhcc--cCcCCCCccHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHhhCCCCHHHHHHHHHh
Confidence 345555 799999999999999999888641 456677888888888766443 345555544
No 178
>PLN02207 UDP-glycosyltransferase
Probab=84.53 E-value=14 Score=42.74 Aligned_cols=79 Identities=14% Similarity=-0.008 Sum_probs=48.4
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----ccccccc-CccEEEEc-------
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFP------- 474 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~d-g~~G~Lv~------- 474 (774)
++.+.++..+ .++|+...+-.+-+.. | -++++||+.+|+|+|+-+..+ ...++.+ -..|+-+.
T Consensus 333 ~g~i~~W~PQ-~~IL~H~~vg~FvTH~---G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~ 407 (468)
T PLN02207 333 RGMICGWSPQ-VEILAHKAVGGFVSHC---G-WNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHS 407 (468)
T ss_pred CeEEEEeCCH-HHHhcccccceeeecC---c-cccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccccccc
Confidence 5666677633 3466665553333321 2 347799999999999966543 2333332 23455321
Q ss_pred --CCCHHHHHHHHHHHHH
Q 004092 475 --KENIKALTHIILQVIT 490 (774)
Q Consensus 475 --~~d~e~La~aI~~Ll~ 490 (774)
.-+.++++++|.+++.
T Consensus 408 ~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 408 DEIVNANEIETAIRCVMN 425 (468)
T ss_pred CCcccHHHHHHHHHHHHh
Confidence 1267899999999997
No 179
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.50 E-value=5.6 Score=48.57 Aligned_cols=144 Identities=12% Similarity=0.027 Sum_probs=90.1
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHHHHH---HchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCC-
Q 004092 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALL---PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHY- 403 (774)
Q Consensus 330 l~~~~~vIl~vGsrl~~~KgiKg~~l-LLeA~~---~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL- 403 (774)
++++...++++= |+..- |.+.+ ++..+. ++++ .|+ ..-.+..+++.| ..........+.+++..+.-
T Consensus 526 ldp~slfdvq~K-R~heY---KRq~LNil~ii~~y~~i~~-~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 598 (797)
T cd04300 526 VDPDSLFDVQVK-RIHEY---KRQLLNVLHIIHLYNRIKE-NPN--ADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADV 598 (797)
T ss_pred cCCCccEEEEee-echhh---hhhhhHHHhhHHHHHHHHh-CCC--cCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 456666666666 66665 88888 555544 4433 232 122346777777 32232233334344332211
Q ss_pred ------CCc--cEEEcc-Cc-ccHHHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCccccccccc--Ccc
Q 004092 404 ------PLG--VVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVN 469 (774)
Q Consensus 404 ------~~~--~V~flG-~~-~dl~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d--g~~ 469 (774)
-.+ +|.|+. +. +-...++.+|||-..-|. .|. -|..=+-+|.-|.+.++|--|...|+.++ ++|
T Consensus 599 in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EA--SGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN 676 (797)
T cd04300 599 VNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEA--SGTGNMKFMLNGALTIGTLDGANVEIAEEVGEEN 676 (797)
T ss_pred hccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccc--cCCchhhHHhcCceeeecccchhHHHHHHhCcCc
Confidence 111 467765 33 556778999999998774 453 45555899999999999999999998866 789
Q ss_pred EEEEcCCCHHHHHH
Q 004092 470 GYLFPKENIKALTH 483 (774)
Q Consensus 470 G~Lv~~~d~e~La~ 483 (774)
+++|-. +++++.+
T Consensus 677 ~fiFG~-~~~ev~~ 689 (797)
T cd04300 677 IFIFGL-TAEEVEA 689 (797)
T ss_pred EEEeCC-CHHHHHH
Confidence 999965 4555443
No 180
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=83.87 E-value=66 Score=34.52 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=53.7
Q ss_pred HHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcC
Q 004092 353 HALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS 431 (774)
Q Consensus 353 ~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS 431 (774)
.+.+.+++..+.++.. .+++++. .... + ....+++...+.-.. .|......+++..+++.||++|...
T Consensus 190 ~~~l~~~l~~l~~~~g--------~~v~~i~~~~~~-D-~~~~~~l~~~~~~~~-~i~~~~~~~e~~~~i~~~~~vI~~R 258 (298)
T TIGR03609 190 LLRLLRALDRLQRDTG--------AFVLFLPFQQPQ-D-LPLARALRDQLLGPA-EVLSPLDPEELLGLFASARLVIGMR 258 (298)
T ss_pred HHHHHHHHHHHHHhhC--------CeEEEEeCCcch-h-HHHHHHHHHhcCCCc-EEEecCCHHHHHHHHhhCCEEEEec
Confidence 4566777777765532 4555555 2211 1 144455555443333 4432223478888999999888776
Q ss_pred ccCcCCccHHHHHHHHcCCCEEEcCC
Q 004092 432 FLEEQTFPEILVKALCFRKPIIAPDL 457 (774)
Q Consensus 432 ~~E~qGfp~~llEAMA~G~PVIatd~ 457 (774)
++ .++-|+.+|+|+|+-.+
T Consensus 259 lH-------~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 259 LH-------ALILAAAAGVPFVALSY 277 (298)
T ss_pred hH-------HHHHHHHcCCCEEEeec
Confidence 55 46789999999997543
No 181
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=82.94 E-value=10 Score=41.80 Aligned_cols=104 Identities=13% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEc
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~fl 411 (774)
.+..+++..|+.. +.|.|. .+...+.+..+.++ . ..++++||+..++ .+..+++.+..+-+. .+.+.
T Consensus 180 ~~~~i~i~p~a~~-~~K~Wp-~e~~~~l~~~l~~~--~-------~~ivl~g~p~~~e-~~~~~~i~~~~~~~~-~~~l~ 246 (344)
T TIGR02201 180 GQNYIVIQPTSRW-FFKCWD-NDRFSALIDALHAR--G-------YEVVLTSGPDKDE-LAMVNEIAQGCQTPR-VTSLA 246 (344)
T ss_pred CCCEEEEeCCCCc-cccCCC-HHHHHHHHHHHHhC--C-------CeEEEecCCCHHH-HHHHHHHHhhCCCCc-ccccC
Confidence 3455677777544 444443 44555666565443 2 6888999654211 022344444333233 35567
Q ss_pred cCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 412 AAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 412 G~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
|.. .++..+++.||++|..- +..+-=|-|+|+|+|+-
T Consensus 247 g~~sL~el~ali~~a~l~Vs~D-------SGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 247 GKLTLPQLAALIDHARLFIGVD-------SVPMHMAAALGTPLVAL 285 (344)
T ss_pred CCCCHHHHHHHHHhCCEEEecC-------CHHHHHHHHcCCCEEEE
Confidence 743 89999999999999763 34556788999999984
No 182
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=82.47 E-value=22 Score=38.71 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=59.3
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEE-eCCCCCchHHHHHHHHHHcCCCCccEEE
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMIL-SGDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIv-GG~~~e~Y~~~L~~la~~lgL~~~~V~f 410 (774)
..+.+++..|+.. ..|.| ..+...+.+..+.++ . ..+++. |++.+. +..+++++ .. . .+.+
T Consensus 177 ~~~~i~~~~~~s~-~~k~W-p~e~~a~li~~l~~~--~-------~~ivl~~G~~~e~---~~~~~i~~--~~-~-~~~l 238 (322)
T PRK10964 177 AGPYLVFLHATTR-DDKHW-PEAHWRELIGLLAPS--G-------LRIKLPWGAEHEE---QRAKRLAE--GF-P-YVEV 238 (322)
T ss_pred CCCeEEEEeCCCc-ccccC-CHHHHHHHHHHHHHC--C-------CeEEEeCCCHHHH---HHHHHHHc--cC-C-ccee
Confidence 3445555566433 33334 444455666666443 2 577776 544321 33344433 22 2 4667
Q ss_pred ccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 411 MAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 411 lG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
.|.. .++..+++.||++|..- +..+-=|-|+|+|+|+-
T Consensus 239 ~g~~sL~elaali~~a~l~I~nD-------SGp~HlA~A~g~p~val 278 (322)
T PRK10964 239 LPKLSLEQVARVLAGAKAVVSVD-------TGLSHLTAALDRPNITL 278 (322)
T ss_pred cCCCCHHHHHHHHHhCCEEEecC-------CcHHHHHHHhCCCEEEE
Confidence 7744 88999999999999764 33556788999999984
No 183
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=81.81 E-value=6 Score=48.22 Aligned_cols=145 Identities=12% Similarity=0.034 Sum_probs=91.4
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHHHHHHchh--hcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcC---
Q 004092 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH--- 402 (774)
Q Consensus 330 l~~~~~vIl~vGsrl~~~KgiKg~~l-LLeA~~~L~~--~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lg--- 402 (774)
++++....+++= |+..- |.+.+ ++..+..+.+ ..|+ ..-.+..+++.| ..........+.+++....
T Consensus 523 ldp~slfdvq~K-R~heY---KRq~LNil~ii~~y~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~i 596 (794)
T TIGR02093 523 VDPNSIFDVQVK-RLHEY---KRQLLNVLHVIYLYNRIKEDPP--KDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVV 596 (794)
T ss_pred cCccccchhhhe-echhh---hHHHHHHhhhHHHHHHHHhCCC--cCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHh
Confidence 445555556665 66655 88888 6665544432 2332 111246788888 3333333344444444332
Q ss_pred -----CCC-ccEEEcc-Cc-ccHHHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCccccccccc--CccE
Q 004092 403 -----YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNG 470 (774)
Q Consensus 403 -----L~~-~~V~flG-~~-~dl~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d--g~~G 470 (774)
+.+ -+|.|+. +. +-...++.+||+-..-|. .| .-|..=+-+|.-|.+.|+|--|...|+.++ ++|+
T Consensus 597 N~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~E--ASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~ 674 (794)
T TIGR02093 597 NNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKE--ASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENI 674 (794)
T ss_pred ccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCcc--ccCcchhHHHhcCcceeecccchhHHHHHHhCcccE
Confidence 211 1477775 33 556778999999998774 45 345555899999999999999999998876 7899
Q ss_pred EEEcCCCHHHHHH
Q 004092 471 YLFPKENIKALTH 483 (774)
Q Consensus 471 ~Lv~~~d~e~La~ 483 (774)
++|-. +++++.+
T Consensus 675 fiFG~-~~~ev~~ 686 (794)
T TIGR02093 675 FIFGL-TVEEVEA 686 (794)
T ss_pred EEcCC-CHHHHHH
Confidence 99864 5555544
No 184
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=81.76 E-value=21 Score=38.75 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEE
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~f 410 (774)
+++.+++..|+.. ..|.| ..+...+.+..+.++ + ..++++| ++.+. +..+++.+ .+++ ..+
T Consensus 178 ~~~~i~i~~gas~-~~K~w-p~e~~~~l~~~l~~~--~-------~~~vl~~g~~~e~---~~~~~i~~--~~~~--~~l 239 (319)
T TIGR02193 178 PAPYAVLLHATSR-DDKTW-PEERWRELARLLLAR--G-------LQIVLPWGNDAEK---QRAERIAE--ALPG--AVV 239 (319)
T ss_pred CCCEEEEEeCCCc-ccCCC-CHHHHHHHHHHHHHC--C-------CeEEEeCCCHHHH---HHHHHHHh--hCCC--Cee
Confidence 3556777777543 44444 334445555555443 2 6777775 44321 23344444 2333 345
Q ss_pred ccC--cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 411 MAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 411 lG~--~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
.|. ..++..+++.||++|.+- +..+-=|-|+|+|+|+-
T Consensus 240 ~g~~sL~el~ali~~a~l~I~~D-------Sgp~HlAaa~g~P~i~l 279 (319)
T TIGR02193 240 LPKMSLAEVAALLAGADAVVGVD-------TGLTHLAAALDKPTVTL 279 (319)
T ss_pred cCCCCHHHHHHHHHcCCEEEeCC-------ChHHHHHHHcCCCEEEE
Confidence 673 388899999999999764 33445677889999983
No 185
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=81.37 E-value=5.1 Score=48.80 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=89.8
Q ss_pred CCCCCEEEEEEecccccccccccHHH-HHHHHHHchh--hcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcC--C
Q 004092 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH--Y 403 (774)
Q Consensus 330 l~~~~~vIl~vGsrl~~~KgiKg~~l-LLeA~~~L~~--~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lg--L 403 (774)
++++...++++= |+..- |.+.+ ++..+..+.+ +.|+ ..-.+..+++.| ..........+.+++.... +
T Consensus 525 ldp~slfdvq~k-R~heY---KRq~Lnil~ii~~y~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~i 598 (798)
T PRK14985 525 INPQAIFDVQIK-RLHEY---KRQHLNLLHILALYKEIRENPQ--ADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVI 598 (798)
T ss_pred cCchhcchhhHh-hhhhh---hhhhhHhhhhHHHHHHHHhCCC--cCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 445554555555 66655 88877 6665544432 2232 112447888888 3333333344444444322 0
Q ss_pred C-----Cc--cEEEcc-Cc-ccHHHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCccccccccc--CccE
Q 004092 404 P-----LG--VVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNG 470 (774)
Q Consensus 404 ~-----~~--~V~flG-~~-~dl~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d--g~~G 470 (774)
. .+ +|.|+. +. +-...++.+||+-..-|. .| ..|..=+-||.-|.+.|+|--|...|+.++ ++||
T Consensus 599 n~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~E--ASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~ 676 (798)
T PRK14985 599 NNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKE--ASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENI 676 (798)
T ss_pred cCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCcc--ccCcchhHHHhcCceeeecccchHHHHHHHhCcCcE
Confidence 0 11 477776 33 556778999999998774 45 345555899999999999999998888865 7799
Q ss_pred EEEcCCCHHHHHH
Q 004092 471 YLFPKENIKALTH 483 (774)
Q Consensus 471 ~Lv~~~d~e~La~ 483 (774)
+++-. +++++.+
T Consensus 677 f~fG~-~~~ev~~ 688 (798)
T PRK14985 677 FIFGH-TVEQVKA 688 (798)
T ss_pred EEeCC-CHHHHHH
Confidence 99964 4555443
No 186
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=80.98 E-value=39 Score=39.03 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=86.8
Q ss_pred CCEEEEEEeccc----ccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCC--
Q 004092 333 DDLVIAIVGTQF----MYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPL-- 405 (774)
Q Consensus 333 ~~~vIl~vGsrl----~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~-- 405 (774)
...+.+.+|+.. -+. +-...+..|+..+ ++ +.|++.= ++... . +.+ ++.+
T Consensus 277 ~~vvyvSfGS~~~~~~lp~---~~~~~l~~~l~~~----~~-------~~FiW~~~~~~~~----~---~~~--~~~~~~ 333 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPE---EQKKELAKALESL----QG-------VTFLWKYRPDDSI----Y---FPE--GLPNRG 333 (496)
T ss_pred CCeEEEECCcccccccCCH---HHHHHHHHHHHhC----CC-------ceEEEEecCCcch----h---hhh--cCCCCC
Confidence 456777788664 333 3444455555555 23 5655555 33220 0 222 3332
Q ss_pred -ccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc----cccccc-ccCccEEEEcC-CCH
Q 004092 406 -GVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYV-DDRVNGYLFPK-ENI 478 (774)
Q Consensus 406 -~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g----gi~EiV-~dg~~G~Lv~~-~d~ 478 (774)
++|...++..+..-++....+-++-+. .|++.+ +||+.+|+|+|+.+.- -....+ +.+..+++... ...
T Consensus 334 ~~nV~~~~W~PQ~~lll~H~~v~~FvTH---gG~nSt-~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~ 409 (496)
T KOG1192|consen 334 RGNVVLSKWAPQNDLLLDHPAVGGFVTH---GGWNST-LESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVS 409 (496)
T ss_pred cCceEEecCCCcHHHhcCCCcCcEEEEC---CcccHH-HHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCc
Confidence 369998888666544332223333332 156665 9999999999964432 233344 45554444333 122
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 004092 479 KALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (774)
Q Consensus 479 e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~ 525 (774)
..+.+++..++.+ ++..+...+-+.... +-.+. +.+..+.+..
T Consensus 410 ~~~~~~~~~il~~---~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~~ 453 (496)
T KOG1192|consen 410 EELLEAIKEILEN---EEYKEAAKRLSEILRDQPISP-ELAVKWVEFV 453 (496)
T ss_pred HHHHHHHHHHHcC---hHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHH
Confidence 3388999999988 665555444444333 23555 5555554433
No 187
>PLN02534 UDP-glycosyltransferase
Probab=79.63 E-value=82 Score=36.81 Aligned_cols=79 Identities=9% Similarity=0.005 Sum_probs=51.0
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----ccccccC-ccEEEEc-------
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDR-VNGYLFP------- 474 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~EiV~dg-~~G~Lv~------- 474 (774)
.+.+.|+..+ ..++...++-.+-+. |-.++++||+++|+|+|+-+..+- ...+.+. +.|+-+.
T Consensus 345 g~~v~~w~pq-~~iL~h~~v~~fvtH----~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~ 419 (491)
T PLN02534 345 GLLIKGWAPQ-VLILSHPAIGGFLTH----CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRW 419 (491)
T ss_pred CeeccCCCCH-HHHhcCCccceEEec----CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccc
Confidence 5777788755 558888887444442 335688999999999999765422 1222211 1232221
Q ss_pred --------CCCHHHHHHHHHHHHH
Q 004092 475 --------KENIKALTHIILQVIT 490 (774)
Q Consensus 475 --------~~d~e~La~aI~~Ll~ 490 (774)
.-+.+++++++.+++.
T Consensus 420 ~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 420 GDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccccCccCHHHHHHHHHHHhc
Confidence 1257899999999996
No 188
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=77.56 E-value=2.2 Score=45.71 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=50.1
Q ss_pred ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC-CEEEcCCccc--ccccccCccEEEEcCCCHHHHHHHHH
Q 004092 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK-PIIAPDLSNI--RKYVDDRVNGYLFPKENIKALTHIIL 486 (774)
Q Consensus 415 ~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~-PVIatd~ggi--~EiV~dg~~G~Lv~~~d~e~La~aI~ 486 (774)
.+..+.|+.+..++.|.-.. .+..-+.|||++|| |||.++.--. .++++=....+.++..+..+|.+.+.
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~--~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDG--PWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCCC--cccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHh
Confidence 35778899999999987543 37889999999997 9998764333 35665455677787666655555443
No 189
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=76.39 E-value=10 Score=35.67 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHcCEEEEcC-----ccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 418 DSVLNTADVVIYGS-----FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 418 ~~~l~aaDI~V~PS-----~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
..++..||++|.-- .|. ...-.-.|.|+|+|.|.-.-..+..-+.+-...-++-..+++...+.+..++
T Consensus 67 ~~li~~aDvVVvrFGekYKQWN---aAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYKQWN---AAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHhhCCEEEEEechHHHHHH---HHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 35899999998653 111 1223346889999999865544433332211222233456777777776654
No 190
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=73.31 E-value=16 Score=42.09 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=25.0
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcC
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg 249 (774)
..||+||.|...++ .++.++.. ..++|.+++.|.
T Consensus 400 ~~PdlI~GnYsDgn-lvA~LLs~-~lgv~~~~iaHs 433 (550)
T PF00862_consen 400 GKPDLIIGNYSDGN-LVASLLSR-KLGVTQCFIAHS 433 (550)
T ss_dssp S--SEEEEEHHHHH-HHHHHHHH-HHT-EEEEE-SS
T ss_pred CCCcEEEeccCcch-HHHHHHHh-hcCCceehhhhc
Confidence 68999999998885 77887765 668999999995
No 191
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=72.37 E-value=1.8e+02 Score=32.99 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=51.6
Q ss_pred EEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc--c---ccccc---cCccEEEEcCCCHH
Q 004092 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN--I---RKYVD---DRVNGYLFPKENIK 479 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg--i---~EiV~---dg~~G~Lv~~~d~e 479 (774)
+..+..-.++.++|..+|++|. -++.++.|+|...+|||---... . +.... ...-|-++. +.+
T Consensus 271 ~~~vs~~~di~dll~~sDiLIT-------DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~--~~~ 341 (388)
T COG1887 271 VLDVSDNADINDLLLVSDILIT-------DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE--TQE 341 (388)
T ss_pred eEecccchhHHHHHhhhCEEEe-------echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc--cHH
Confidence 4444445789999999999994 26889999999999999742211 1 11111 112344544 678
Q ss_pred HHHHHHHHHHHc
Q 004092 480 ALTHIILQVITN 491 (774)
Q Consensus 480 ~La~aI~~Ll~d 491 (774)
++.++|...+.+
T Consensus 342 ~li~ai~~~~~~ 353 (388)
T COG1887 342 ELIDAIKPYDED 353 (388)
T ss_pred HHHHHHHhhhcc
Confidence 899999988886
No 192
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=70.00 E-value=9.4 Score=37.96 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHHH--HHcCCeEEEEEcCCCcchhhhh-----------hcCcc-EEEcccc--h----------hHH
Q 004092 155 LIDPQQLQMVTIAIAL--REIGYAIQVYSLEDGRAHEVWR-----------NIGVP-VAILQTG--R----------EKA 208 (774)
Q Consensus 155 ~~GG~e~~v~~Lak~L--~~~G~eV~V~t~~~~~~~~~~~-----------~~gi~-i~~l~~~--~----------~l~ 208 (774)
+.||--..|..|++.+ ....++..+++..+.......+ ...++ ...+... . ...
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~~~~~~ 85 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRAFLQSL 85 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHHHHHHH
Confidence 3799999999999999 3445677777776644333211 11111 1111100 0 112
Q ss_pred HHhhhcCccEEEEcCCchhHHHHHHHhCCCC------CCCEEEE
Q 004092 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFK------SLPLVWT 246 (774)
Q Consensus 209 ~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~------~ipvI~t 246 (774)
.++...+||+|+++.+..+ +...++.. .. ++++||.
T Consensus 86 ~il~r~rPdvii~nGpg~~-vp~~~~~~-l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 86 RILRRERPDVIISNGPGTC-VPVCLAAK-LLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHhCCCEEEEcCCcee-eHHHHHHH-HHHHhhccCCcEEEE
Confidence 2344579999999998763 33333322 22 6788763
No 193
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=68.20 E-value=41 Score=38.97 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=68.4
Q ss_pred CCeEEEEEeCCCCCchHHHHHHHHHH-cCCCCccEEEccC------cccHHHHHHHcCEEEEcCccCcCCccHHHHHHHH
Q 004092 375 SPIKVMILSGDSTSNYSVVIEAIAHN-LHYPLGVVKHMAA------EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (774)
Q Consensus 375 ~~v~LvIvGG~~~e~Y~~~L~~la~~-lgL~~~~V~flG~------~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA 447 (774)
+++-+.++|++.....+..|-++.++ -+... .+..... .....+.++.|..++.|.-.+ -..-.+.||+.
T Consensus 289 R~~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~-~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~Gd~--~ts~R~fdai~ 365 (464)
T KOG1021|consen 289 RPILAFFAGAPAGGQIRSILLDLWKKDPDTEV-FVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPGDT--PTSPRLFDAIV 365 (464)
T ss_pred CceEEEEeccccCCcHHHHHHHHhhcCcCccc-cccCCCCccccCCcchHHHHhhcCeEEECCCCCC--cccHhHHHHHH
Confidence 34778888864555556666666554 11111 1222211 146778899999999999777 36779999999
Q ss_pred cCC-CEEEcCCcccc--cccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 448 FRK-PIIAPDLSNIR--KYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 448 ~G~-PVIatd~ggi~--EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.|| |||.++.--.+ +.++-.+-++.++.+++..+ |.++|..
T Consensus 366 ~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~---~~~iL~~ 409 (464)
T KOG1021|consen 366 SGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPEL---IKNILLS 409 (464)
T ss_pred hCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhH---HHHHHHh
Confidence 997 99998863322 33333345666653333333 5555554
No 194
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=67.79 E-value=29 Score=34.39 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=68.5
Q ss_pred eEEEEecCCCCChHHHH-HHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 146 QLALVFPDLLIDPQQLQ-MVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 146 rialV~~~L~~GG~e~~-v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
+|+++.+- .||.-++ +..++..+ .|+++++|..... -.|+.-|-.++ ..........+|+|++.+.
T Consensus 2 ~ILlle~y--~ggSHk~~~~~L~~~~---~~~~~lltLP~r~--w~WRmRg~AL~------~a~~~~~~~~~dll~aTsm 68 (168)
T PF12038_consen 2 RILLLEPY--YGGSHKQWADGLAAHS---EHEWTLLTLPARK--WHWRMRGAALY------FAQQIPLSHSYDLLFATSM 68 (168)
T ss_pred eEEEEccc--cccCHHHHHHHHHHhc---cCCEEEEEcCCCc--cccccCCCHHH------HhhccccccCCCEEEeecc
Confidence 45555443 3444443 33344444 5899999985422 22332221111 1122344567899999998
Q ss_pred chhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCC
Q 004092 225 EAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDY 286 (774)
Q Consensus 225 ~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~ 286 (774)
...+.+..+.. ...++|.+..+|++.+.|+..+...+....-+.. -...-.++.++|.+.
T Consensus 69 ldLa~l~gL~p-~l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~n-i~saLaAD~v~FNS~ 128 (168)
T PF12038_consen 69 LDLATLRGLRP-DLANVPKILYFHENQLAYPVSPGQERDFQYGMNN-IYSALAADRVVFNSA 128 (168)
T ss_pred ccHHHHHhhcc-CCCCCCEEEEEecCcccCCCCCCccccccHHHHH-HHHHHhceeeeecch
Confidence 77555555553 3567999999999888877755433322111111 112335666666533
No 195
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.92 E-value=18 Score=40.43 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=58.7
Q ss_pred cccCCCCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC------cchhhhhhcCccEEEcccchhHH-
Q 004092 136 KLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG------RAHEVWRNIGVPVAILQTGREKA- 208 (774)
Q Consensus 136 ~~~r~~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~------~~~~~~~~~gi~i~~l~~~~~l~- 208 (774)
+.-.++.++|.+.++++ +.-+|-.+.+..+|.+++++||.+.++|...- .+.......++|++.-.......
T Consensus 92 ~~~~~~K~kpsVimfVG-LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ 170 (483)
T KOG0780|consen 92 SALQPKKGKPSVIMFVG-LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVK 170 (483)
T ss_pred cccccccCCCcEEEEEe-ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHH
Confidence 33344667777777776 45566778899999999999999999987541 12222345677766543332222
Q ss_pred ------HHhhhcCccEEEEcCC
Q 004092 209 ------SFVNWLNYDGILVNSL 224 (774)
Q Consensus 209 ------~~i~~~~~DIIhvhs~ 224 (774)
...+..++|+|++.+.
T Consensus 171 ia~egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 171 IASEGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred HHHHHHHHHHhcCCcEEEEeCC
Confidence 2355689999999764
No 196
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=63.59 E-value=28 Score=32.90 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=54.5
Q ss_pred CCCCCchHHHHHHHHHHcCCCCccEEEccCcc------------------------------c--HHHHHHHcCEEEEcC
Q 004092 384 GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG------------------------------D--VDSVLNTADVVIYGS 431 (774)
Q Consensus 384 G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~------------------------------d--l~~~l~aaDI~V~PS 431 (774)
|+.....++++++-+++.+|+ |.|.+++. . ...++..||++|.--
T Consensus 7 GEIHtdWRe~I~~ga~~~~L~---v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrF 83 (144)
T TIGR03646 7 GEIHTDWREEIKEGAKSKNLP---IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALF 83 (144)
T ss_pred CcccchHHHHHHHHHHHcCCC---eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEe
Confidence 333345567787888777774 66666431 1 235899999998653
Q ss_pred -----ccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 432 -----FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 432 -----~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
.+. -..-.-.|.|+|+|.|.-.-..+..-+.+-...-+.-..+++...+.+..++
T Consensus 84 GekYKQWN---aAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 84 GEKYKQWN---AAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred chHHHHHH---HHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 111 1222346889999999865443332222111111222345666666555543
No 197
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=61.27 E-value=1.2e+02 Score=31.65 Aligned_cols=128 Identities=17% Similarity=0.141 Sum_probs=69.2
Q ss_pred CCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHH-HH-HHcCCCCc
Q 004092 329 GFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEA-IA-HNLHYPLG 406 (774)
Q Consensus 329 gl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~-la-~~lgL~~~ 406 (774)
++.....+|+++|++ .++..+++.+++=...+.. .+-. .||-..+. ..+.. +. +.+.+++
T Consensus 103 ~vA~r~GiILFv~tn-------~~~~~~ve~aA~r~~gy~~-------~~~w-~~G~lTN~--~~l~g~~~~~~~~~pd- 164 (251)
T KOG0832|consen 103 HVAHRGGIILFVGTN-------NGFKDLVERAARRAGGYSH-------NRKW-LGGLLTNA--RELFGALVRKFLSLPD- 164 (251)
T ss_pred HHHhcCCeEEEEecC-------cchHHHHHHHHHHhcCcee-------eeee-ccceeecc--hhhcccccccccCCCc-
Confidence 455566699999944 3334446655543333332 3333 44322211 11111 11 2234566
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc-CCcccccccccCccEEEEcCC-CHHHHHHH
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKE-NIKALTHI 484 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat-d~ggi~EiV~dg~~G~Lv~~~-d~e~La~a 484 (774)
.+.|..-..- |++|.-...|. -.+++||.-+++|+|+- |....++++ -|-+|.+ |.-.-.+-
T Consensus 165 ~~~f~~t~~~--------D~vvvln~~e~---~sAilEA~K~~IPTIgIVDtN~~P~li-----TYpVPaNDDs~~sv~f 228 (251)
T KOG0832|consen 165 ALCFLPTLTP--------DLVVVLNPEEN---HSAILEAAKMAIPTIGIVDTNCNPELI-----TYPVPANDDSPASVEF 228 (251)
T ss_pred ceeecccCCc--------ceeEecCcccc---cHHHHHHHHhCCCeEEEecCCCCccce-----eeccCCCCCcHHHHHH
Confidence 5666654321 99988887773 78999999999999982 333355655 3456653 33333444
Q ss_pred HHHHHH
Q 004092 485 ILQVIT 490 (774)
Q Consensus 485 I~~Ll~ 490 (774)
+..++.
T Consensus 229 ~~~l~k 234 (251)
T KOG0832|consen 229 ILNLLK 234 (251)
T ss_pred HHHHHH
Confidence 444443
No 198
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=60.53 E-value=35 Score=38.67 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=66.9
Q ss_pred CcCCccHHHHHHHHcCCCEEEcCCc---ccccccccCccEEEEcC-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 004092 434 EEQTFPEILVKALCFRKPIIAPDLS---NIRKYVDDRVNGYLFPK-ENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (774)
Q Consensus 434 E~qGfp~~llEAMA~G~PVIatd~g---gi~EiV~dg~~G~Lv~~-~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a 509 (774)
|+-+++..+-.-|+||-.|+..+.. ...+.+...++=+-+.. +|.++|.++|..+.++ ++..++++++|++.+
T Consensus 222 dG~~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~---~~~A~~IA~~g~~f~ 298 (395)
T PF05686_consen 222 DGNAWSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAH---DDEAQRIAENGQRFA 298 (395)
T ss_pred CCceeehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccC---hHHHHHHHHHHHHHH
Confidence 4446777788889999888875432 22233445555444443 4789999999999999 999999999999999
Q ss_pred -HhcCHHHHHHHHHHHHHHH
Q 004092 510 -KNLMALETIEGYAMLLENV 528 (774)
Q Consensus 510 -k~fs~~~~a~~y~~L~e~l 528 (774)
+.++.+.+..-+..++.+.
T Consensus 299 ~~~L~~~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 299 REYLTMEDVYCYWRRLLLEY 318 (395)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 4577777777777777654
No 199
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=59.58 E-value=1.4e+02 Score=30.77 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHHHHcCCCEEEcCCcccc-cccccC-ccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 442 LVKALCFRKPIIAPDLSNIR-KYVDDR-VNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 442 llEAMA~G~PVIatd~ggi~-EiV~dg-~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+++-.-.-.|+|.-+-|+.. ....+| ..-+=+++.+--+||.|+.--++.
T Consensus 178 ~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 178 LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred cHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHH
Confidence 34444457898887654433 222221 111224454555699999876765
No 200
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=55.15 E-value=75 Score=33.77 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=64.9
Q ss_pred CcCCccHHHHHHHHcCCCEEEcCCc---ccccccccCccEEEEcCCCH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 004092 434 EEQTFPEILVKALCFRKPIIAPDLS---NIRKYVDDRVNGYLFPKENI--KALTHIILQVITNGKISPFARNIASIGRRS 508 (774)
Q Consensus 434 E~qGfp~~llEAMA~G~PVIatd~g---gi~EiV~dg~~G~Lv~~~d~--e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ 508 (774)
|+.+++..+---|+|+-.|+..... ...+.+....+=+-+.. |- ++|.++|..+.++ ++..++++++|++.
T Consensus 153 dG~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~-d~sd~~l~~~i~~~~~~---~~~a~~Ia~~~~~~ 228 (256)
T smart00672 153 EGVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKS-DLSCRELKEAVDWGNEH---DKKAQEIGKRGSEF 228 (256)
T ss_pred CCccchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeC-CCchhhHHHHHHHHHhC---HHHHHHHHHHHHHH
Confidence 3446788888889999888876532 22233444444333332 33 3499999999999 99999999999999
Q ss_pred HHh-cCHHHHHHHHHHHHHHH
Q 004092 509 VKN-LMALETIEGYAMLLENV 528 (774)
Q Consensus 509 ak~-fs~~~~a~~y~~L~e~l 528 (774)
+++ .+.+.+..-+..++.+.
T Consensus 229 ~~~~L~~~~~~~Y~~~ll~ey 249 (256)
T smart00672 229 IQQNLSMEDVYDYMFHLLQEY 249 (256)
T ss_pred HHHHcCHHHHHHHHHHHHHHH
Confidence 965 78888887777777653
No 201
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=54.59 E-value=55 Score=35.67 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=50.7
Q ss_pred HHchhhcccCCCCCCCeEEEEEeCCCC--CchHHHHHHHHHHcCCCCccEEEccCc-----ccHHHHHH-----HcC--E
Q 004092 361 LPLFSEVSVENESNSPIKVMILSGDST--SNYSVVIEAIAHNLHYPLGVVKHMAAE-----GDVDSVLN-----TAD--V 426 (774)
Q Consensus 361 ~~L~~~~p~~~~~~~~v~LvIvGG~~~--e~Y~~~L~~la~~lgL~~~~V~flG~~-----~dl~~~l~-----aaD--I 426 (774)
.++.+..|+ .++|+|||.. +.|. ...+.+|..- +..-|.. +.+...+. +.+ -
T Consensus 69 ~eI~~lnpd--------~VLIIGGp~AVs~~yE----~~Lks~GitV--~RigG~nR~ETa~~v~~~~~~~yp~af~n~k 134 (337)
T COG2247 69 DEIIELNPD--------LVLIIGGPIAVSPNYE----NALKSLGITV--KRIGGANRYETAEKVAKFFREDYPNAFKNVK 134 (337)
T ss_pred HHHHhhCCc--------eEEEECCCCcCChhHH----HHHHhCCcEE--EEecCcchHHHHHHHHHHHHhhchhhhcCeE
Confidence 445556777 7888887543 3444 4555667753 5555532 34444554 455 5
Q ss_pred EEEcCccCcCCccHHHHHHHHcCC-CEEEcCCc
Q 004092 427 VIYGSFLEEQTFPEILVKALCFRK-PIIAPDLS 458 (774)
Q Consensus 427 ~V~PS~~E~qGfp~~llEAMA~G~-PVIatd~g 458 (774)
+|..+-|+ ++..++|+|--|+ ||+.++..
T Consensus 135 vvvv~GwD---y~~~~~e~~k~~~~p~~~~n~~ 164 (337)
T COG2247 135 VVVVYGWD---YADALMELMKEGIVPVILKNTS 164 (337)
T ss_pred EEEEeccc---cHHHHHHHHhcCcceeEecccc
Confidence 55566666 4559999999995 88887654
No 202
>PLN03015 UDP-glucosyl transferase
Probab=54.04 E-value=27 Score=40.53 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=46.9
Q ss_pred EEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----ccccc-ccCccEEEEc------CC
Q 004092 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYV-DDRVNGYLFP------KE 476 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV-~dg~~G~Lv~------~~ 476 (774)
+.+.++..+. ++++...+-.+-+. +--++++||+++|+|+|+-+..+ ...++ +.-..|+-+. .-
T Consensus 337 l~v~~W~PQ~-~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQV-EILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHH-HHhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 4555666333 35555555333332 22458899999999999976542 22333 2223455442 12
Q ss_pred CHHHHHHHHHHHHH
Q 004092 477 NIKALTHIILQVIT 490 (774)
Q Consensus 477 d~e~La~aI~~Ll~ 490 (774)
+.++++++|.+++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 57899999999995
No 203
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=52.61 E-value=1e+02 Score=34.22 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=66.5
Q ss_pred eEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc------ccHH----HHHHHcCEEEEcCccCcCCccHHHHHH
Q 004092 377 IKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE------GDVD----SVLNTADVVIYGSFLEEQTFPEILVKA 445 (774)
Q Consensus 377 v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~------~dl~----~~l~aaDI~V~PS~~E~qGfp~~llEA 445 (774)
-+++++| |... ...-+...+.|..+ |.+.+.. +++. .+...+||++..|.......|....|.
T Consensus 175 k~vLvIGaGem~----~l~a~~L~~~g~~~--i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~ 248 (338)
T PRK00676 175 ASLLFIGYSEIN----RKVAYYLQRQGYSR--ITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWES 248 (338)
T ss_pred CEEEEEcccHHH----HHHHHHHHHcCCCE--EEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHH
Confidence 5888888 7654 22222233345543 7776633 2332 567799999986321111245555565
Q ss_pred HHcCCCEEEcCCcccccc--cccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004092 446 LCFRKPIIAPDLSNIRKY--VDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAM 523 (774)
Q Consensus 446 MA~G~PVIatd~ggi~Ei--V~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~ 523 (774)
+.--.+-+.-|..-.+++ +....+-.++ |+++|.+.+.+-+. .|++....+. ...++.+.+|.+
T Consensus 249 ~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly---~iDdL~~i~~~n~~------~R~~~~~~ae-----~iI~~~~~~~~~ 314 (338)
T PRK00676 249 LADIPDRIVFDFNVPRTFPWSETPFPHRYL---DMDFISEWVQKHLQ------CRKEVNNKHK-----LSLREAAYKQWE 314 (338)
T ss_pred HhhccCcEEEEecCCCCCccccccCCcEEE---EhHHHHHHHHHHHH------HHHHHHHHHH-----HHHHHHHHHHHH
Confidence 543221244454444443 2222333455 45666655544332 2333333333 345566677777
Q ss_pred HHHHHhc
Q 004092 524 LLENVLK 530 (774)
Q Consensus 524 L~e~ll~ 530 (774)
.|++-..
T Consensus 315 ~~~~~~~ 321 (338)
T PRK00676 315 SYEKKLS 321 (338)
T ss_pred HHHHHHh
Confidence 7766433
No 204
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=51.91 E-value=26 Score=32.67 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=34.1
Q ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc
Q 004092 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG 204 (774)
Q Consensus 154 L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~ 204 (774)
...+|--.-+..+++.|+++||+|.+.+... .....+..|+++..+...
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~--~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRGHEVRLATPPD--FRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-EEEEEETGG--GHHHHHHTT-EEEESSSC
T ss_pred cCChhHHHHHHHHHHHHhccCCeEEEeeccc--ceecccccCceEEEecCC
Confidence 3456777778899999999999999887643 344446777777666544
No 205
>PRK04155 chaperone protein HchA; Provisional
Probab=50.43 E-value=1.2e+02 Score=32.76 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=47.5
Q ss_pred cceeEeechhhhHHh-hhccccccccccccccccCCCCCCCeEEEEecCCC-----------CChHHHHHHHHHHHHHHc
Q 004092 106 GEEVTFLPLKLMEKF-QSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLL-----------IDPQQLQMVTIAIALREI 173 (774)
Q Consensus 106 g~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~rk~rialV~~~L~-----------~GG~e~~v~~Lak~L~~~ 173 (774)
.+.=.|-||+.+++- .... .+++.+ .=-+++.-.| ||++|..+-. .|=-+.-+......|.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~k-kiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~A 89 (287)
T PRK04155 15 AEDNAFFPSPYSLSQYTSPK--SDLDGV--DYPKPYRGGK-KILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKA 89 (287)
T ss_pred cccCCcCCChhhhhhhcCCC--cCCCCC--cCCCcCCCCC-eEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHC
Confidence 455567788877766 3222 345544 2223443334 7888887331 233355677778999999
Q ss_pred CCeEEEEEcCCCc
Q 004092 174 GYAIQVYSLEDGR 186 (774)
Q Consensus 174 G~eV~V~t~~~~~ 186 (774)
|++|++++...++
T Consensus 90 G~eVdiAS~~G~~ 102 (287)
T PRK04155 90 GFEFDVATLSGNP 102 (287)
T ss_pred CCEEEEEecCCCc
Confidence 9999999986533
No 206
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=47.94 E-value=1.2e+02 Score=32.05 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=66.7
Q ss_pred EEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEccC--
Q 004092 338 AIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA-- 413 (774)
Q Consensus 338 l~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG--G~~~e~Y~~~L~~la~~lgL~~~~V~flG~-- 413 (774)
+.+|+.... .+-..+.+.+-.+... ++ .+++++. +...+.|.+...+..+++|... |..+..
T Consensus 2 ~~iGG~~~~----~~~~~i~~~~~~lag~-~~-------~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~--v~~l~i~~ 67 (250)
T TIGR02069 2 VIIGGAEDK----VGDREILREFVSRAGG-ED-------AIIVIITSASEEPREVGERYITIFSRLGVKE--VKILDVRE 67 (250)
T ss_pred eEEeCcccc----CChHHHHHHHHHHhCC-CC-------ceEEEEeCCCCChHHHHHHHHHHHHHcCCce--eEEEecCC
Confidence 344544433 3444466766555422 22 5777776 3333455666777778888865 433331
Q ss_pred c-----ccHHHHHHHcCEEEEcC--------ccCcCCccHHHHHHHHcCCCEEEcCCccc
Q 004092 414 E-----GDVDSVLNTADVVIYGS--------FLEEQTFPEILVKALCFRKPIIAPDLSNI 460 (774)
Q Consensus 414 ~-----~dl~~~l~aaDI~V~PS--------~~E~qGfp~~llEAMA~G~PVIatd~ggi 460 (774)
. +++.+.+..||++++.- .+.+.++--.+-++...|+|++.+..|.+
T Consensus 68 r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 68 REDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred hHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 1 45678899999988753 23322344567789999999999887765
No 207
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=47.71 E-value=92 Score=31.90 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=54.4
Q ss_pred eEEEEEe--CCCCCchHHHHHHHHHHc-CCCCccEEEccCcccHHHHHHHcCEEEEcC--------ccCcCCccHHHHHH
Q 004092 377 IKVMILS--GDSTSNYSVVIEAIAHNL-HYPLGVVKHMAAEGDVDSVLNTADVVIYGS--------FLEEQTFPEILVKA 445 (774)
Q Consensus 377 v~LvIvG--G~~~e~Y~~~L~~la~~l-gL~~~~V~flG~~~dl~~~l~aaDI~V~PS--------~~E~qGfp~~llEA 445 (774)
.++.++. ....++|...+++..+++ |... .+...-..++..+.+..||++++|- .+.+.++--.+-++
T Consensus 32 ~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~-~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 32 PKVLFVPTASGDRDEYTARFYAAFESLRGVEV-SHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhccCcEE-EEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHH
Confidence 6888888 344456666777777777 7654 2222222357788999999999985 11112455566677
Q ss_pred HHcCCCEEEcCCccc
Q 004092 446 LCFRKPIIAPDLSNI 460 (774)
Q Consensus 446 MA~G~PVIatd~ggi 460 (774)
...|+|++.+-.|..
T Consensus 111 ~~~g~~i~G~SAGa~ 125 (212)
T cd03146 111 LERGVVYIGWSAGSN 125 (212)
T ss_pred HHCCCEEEEECHhHH
Confidence 778999998766643
No 208
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=47.16 E-value=1.3e+02 Score=30.79 Aligned_cols=122 Identities=15% Similarity=0.068 Sum_probs=66.7
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc-Cc-ccHHHHHHHcCEE
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE-GDVDSVLNTADVV 427 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG-~~-~dl~~~l~aaDI~ 427 (774)
|-...|.+|+.-+..-.+ =+++++| .+. ....+++.++..|-..-+=.++| .. +-...-+..=|++
T Consensus 44 kT~~~L~~A~~~i~~i~~--------~~ILfVgtk~~---~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdll 112 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIEP--------EDILVVSARIY---GQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVV 112 (196)
T ss_pred HHHHHHHHHHHHHHHhhC--------CeEEEEecCHH---HHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEE
Confidence 444455556555544333 3888999 332 23567777776654331224555 11 2122234556666
Q ss_pred EEcCccCcCCccHHHHHHHHcCCCEEE-cCCcccccccccCccEEEEcCCC-HHHHHHHHHHHHHc
Q 004092 428 IYGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITN 491 (774)
Q Consensus 428 V~PS~~E~qGfp~~llEAMA~G~PVIa-td~ggi~EiV~dg~~G~Lv~~~d-~e~La~aI~~Ll~d 491 (774)
+.....+ =..++.||..+|+|+|+ .|...-+..| -+.+|.+| .-.-...+..++.+
T Consensus 113 iv~dp~~---~~~Av~EA~~l~IP~Iai~DTn~dp~~v-----dypIP~Ndds~~Si~li~~lla~ 170 (196)
T TIGR01012 113 VVTDPRA---DHQALKEASEVGIPIVALCDTDNPLRYV-----DLVIPTNNKGRHSLALIYWLLAR 170 (196)
T ss_pred EEECCcc---ccHHHHHHHHcCCCEEEEeeCCCCCccC-----CEEECCCCchHHHHHHHHHHHHH
Confidence 6554333 37899999999999998 3444445544 24455433 33334445555544
No 209
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.85 E-value=89 Score=32.53 Aligned_cols=88 Identities=7% Similarity=0.053 Sum_probs=51.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
+|+++.+++...-....+..+.+.+.+.||++.+....... .... .....+...++|.|++....
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~-~~~~--------------~~i~~~~~~~~Dgiii~~~~ 65 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGDL-TKQI--------------ADVEDLLTRGVNVLIINPVD 65 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCH-HHHH--------------HHHHHHHHcCCCEEEEecCC
Confidence 47788888776677778888999999999999876543211 1110 11122345689998886543
Q ss_pred hhHHHHHHHhCCCCCCCEEEEEc
Q 004092 226 AKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
.......+......++|+|..-.
T Consensus 66 ~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 66 PEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred ccchHHHHHHHHHCCCCEEEecC
Confidence 21111111111245689886543
No 210
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=46.71 E-value=72 Score=37.28 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=43.6
Q ss_pred eEEEEecCCCCChH-------HHHHHHHHHHHHHcC-CeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCcc
Q 004092 146 QLALVFPDLLIDPQ-------QLQMVTIAIALREIG-YAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYD 217 (774)
Q Consensus 146 rialV~~~L~~GG~-------e~~v~~Lak~L~~~G-~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~D 217 (774)
||++|.|+...+|. ..-+..+|..|.+.| |+|.++-....+.. ...+...+...+||
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~---------------~~~~~~~l~~~~pd 65 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDAMTGPLT---------------DEKLVERLRAHCPD 65 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecccccCCC---------------HHHHHHHHHhcCcC
Confidence 57888887766654 345678889999999 89999864332211 12334456667899
Q ss_pred EEEEcCCc
Q 004092 218 GILVNSLE 225 (774)
Q Consensus 218 IIhvhs~~ 225 (774)
+|-+....
T Consensus 66 vVgis~~t 73 (497)
T TIGR02026 66 LVLITAIT 73 (497)
T ss_pred EEEEecCc
Confidence 98886644
No 211
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=46.50 E-value=1.5e+02 Score=33.36 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=71.0
Q ss_pred hHHHHHHhCCC---CCCEEEEEEeccccccccccc-HHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHH
Q 004092 321 NDTVRVKMGFK---PDDLVIAIVGTQFMYRGLWLE-HALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEA 396 (774)
Q Consensus 321 k~~lR~~lgl~---~~~~vIl~vGsrl~~~KgiKg-~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~ 396 (774)
+......+|++ ++...|..++ |. .. +..+++++....+ ++.++|.+|... ..+++
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~----Ye---~~~l~~ll~~~~~~~~----------pv~llvp~g~~~----~~~~~ 226 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC----YE---NAALASLLDAWAASPK----------PVHLLVPEGRAL----NSLAA 226 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe----CC---chHHHHHHHHHhcCCC----------CeEEEecCCccH----HHHHH
Confidence 45566788885 5666666666 44 33 6666777764332 388888887655 33433
Q ss_pred HHH--------HcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc
Q 004092 397 IAH--------NLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (774)
Q Consensus 397 la~--------~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g 458 (774)
... .....+-.|..+.++ ++...+|..||+-+.- .|. +++-|.-+|+|.|=.-++
T Consensus 227 ~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVR--GED-----SfVRAqwAgkPFvWhIYp 291 (374)
T PF10093_consen 227 WLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVR--GED-----SFVRAQWAGKPFVWHIYP 291 (374)
T ss_pred HhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEe--cch-----HHHHHHHhCCCceEecCc
Confidence 322 111222246777766 7889999999996653 454 778999999999865443
No 212
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=46.14 E-value=93 Score=30.69 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=29.5
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
....++++++++..+.||- -+.+|+.|.+.|++|+|+...+
T Consensus 22 ~~~~~~v~il~G~GnNGgD---gl~~AR~L~~~G~~V~v~~~~~ 62 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGD---GLVAARHLANRGYNVTVYLVGP 62 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHH---HHHHHHHHHHTTCEEEEEEEES
T ss_pred ccCCCeEEEEECCCCChHH---HHHHHHHHHHCCCeEEEEEEec
Confidence 3567888888887666655 4568899999999999966544
No 213
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=46.10 E-value=36 Score=33.43 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=29.6
Q ss_pred hHHHHhhhcCccEEEEcCCchhHH-HHHHHhCCCC-CCCEEEEEc
Q 004092 206 EKASFVNWLNYDGILVNSLEAKVV-ISNIMQEPFK-SLPLVWTIH 248 (774)
Q Consensus 206 ~l~~~i~~~~~DIIhvhs~~~~~~-l~~Ll~~~~~-~ipvI~tiH 248 (774)
.+..+++..+||+|++.++..... +..+..+... ++|++..+-
T Consensus 80 ~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 80 RLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 455667889999999999987555 5555444334 677765444
No 214
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.85 E-value=1.2e+02 Score=31.76 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=52.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
+|+++.+++........+..+.+.+.+.||++.+.....+... . ......+...++|.|++....
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgiil~~~~ 66 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAG-Q--------------AAALNQAIALKPDGIVLGGVD 66 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHH-H--------------HHHHHHHHHcCCCEEEEcCCC
Confidence 5788888887777778888899999999999888654322111 0 011223455789999987653
Q ss_pred hhHHHHHHHhCCCCCCCEEEE
Q 004092 226 AKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~t 246 (774)
.......+......++|+|..
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 67 AAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHHHHHHHCCCCEEEe
Confidence 211111111111346898864
No 215
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=45.62 E-value=2.6e+02 Score=29.79 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=67.2
Q ss_pred EEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc
Q 004092 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE 414 (774)
Q Consensus 335 ~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~ 414 (774)
..+++++... .+++++.++++++. +|. ++.+=.. |... ...-....+.+..|++-..|-|-|--
T Consensus 79 ~~vl~v~~ds----p~~t~~eli~~ak~----~p~------~~~~g~~-g~g~-~~hl~~~~l~~~~G~~~~~Vpy~G~~ 142 (274)
T PF03401_consen 79 PNVLVVRADS----PYKTLEELIEYAKA----NPG------KLTFGSS-GPGS-SDHLAAALLAKAAGIKFTHVPYDGGA 142 (274)
T ss_dssp EEEEEEETTS----S-SSHHHHHHHHHC----SCC------C-EEEES-STTS-HHHHHHHHHHHHHT---EEEE-SSHH
T ss_pred ceEEEEeCCC----ccccHHHHHHHHHh----CCC------CeEEEec-CCCc-hHHHHHHHHHHHhCCceEEEEeCCcc
Confidence 3677777333 34899888888864 333 1333333 3221 11233455667778765345555543
Q ss_pred ccHHHHHH-HcCEEEEcCccCcCCccHHHHHHHHcCC--CEEEc---------CCcccc-----cccccCccEEEEcCCC
Q 004092 415 GDVDSVLN-TADVVIYGSFLEEQTFPEILVKALCFRK--PIIAP---------DLSNIR-----KYVDDRVNGYLFPKEN 477 (774)
Q Consensus 415 ~dl~~~l~-aaDI~V~PS~~E~qGfp~~llEAMA~G~--PVIat---------d~ggi~-----EiV~dg~~G~Lv~~~d 477 (774)
+.+..++. ..|+.+... .........|. |+.++ +++.+. ++.-..-.|++++.+.
T Consensus 143 ~~~~allgG~vd~~~~~~--------~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gt 214 (274)
T PF03401_consen 143 EALTALLGGHVDAAFGSP--------GEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGT 214 (274)
T ss_dssp HHHHHHHTTSSSEEEEEH--------HHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS
T ss_pred HHHHHHhCCeeeEEeecH--------HHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCC
Confidence 44455544 355544221 12223333343 22111 222222 3333334688999888
Q ss_pred HHH----HHHHHHHHHHcCCCcHHHHHHHHHH
Q 004092 478 IKA----LTHIILQVITNGKISPFARNIASIG 505 (774)
Q Consensus 478 ~e~----La~aI~~Ll~d~~~~~~r~~m~~~a 505 (774)
+++ |.+++.+++++ ++..+.+.+.+
T Consensus 215 p~~~~~~l~~a~~~~~~~---pe~~~~~~~~g 243 (274)
T PF03401_consen 215 PDEIVDKLADAIKKALED---PEFQEFLEKMG 243 (274)
T ss_dssp -HHHHHHHHHHHHHHHT----HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCC---HHHHHHHHHCC
Confidence 766 55566666677 77666665544
No 216
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=44.16 E-value=1.1e+02 Score=34.81 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=51.9
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ 457 (774)
.+.|+.-.. +..+.++++++- ..... .+++...+..+|++|..+.... +. +-..+.-+.|.+.-|.
T Consensus 207 ~I~V~nRt~-----~ra~~La~~~~~----~~~~~-~~~l~~~l~~aDiVI~aT~a~~---~v-i~~~~~~~~~~~~iDL 272 (414)
T PRK13940 207 QIMLANRTI-----EKAQKITSAFRN----ASAHY-LSELPQLIKKADIIIAAVNVLE---YI-VTCKYVGDKPRVFIDI 272 (414)
T ss_pred EEEEECCCH-----HHHHHHHHHhcC----CeEec-HHHHHHHhccCCEEEECcCCCC---ee-ECHHHhCCCCeEEEEe
Confidence 677777322 334566665431 11111 2578889999999999885542 22 2244456789888888
Q ss_pred cccccccc---cCccEEEEcCCCHHHHHHHHH
Q 004092 458 SNIRKYVD---DRVNGYLFPKENIKALTHIIL 486 (774)
Q Consensus 458 ggi~EiV~---dg~~G~Lv~~~d~e~La~aI~ 486 (774)
+-.+++=. +-.+-.++ |.++|.+.+.
T Consensus 273 avPRdidp~v~~l~~v~l~---~iDdl~~i~~ 301 (414)
T PRK13940 273 SIPQALDPKLGELEQNVYY---CVDDINAVIE 301 (414)
T ss_pred CCCCCCCccccCcCCeEEE---eHHHHHHHHH
Confidence 76665422 11122344 4555555444
No 217
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.11 E-value=1.3e+02 Score=30.99 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=29.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSL 182 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~ 182 (774)
||+++.+++...-....+..+...+.+.||++.++..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 37 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGP 37 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 5788888876666677777888889999999988754
No 218
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=43.54 E-value=1.5e+02 Score=29.81 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHHHc--CCeEEEEEcCCCcchhhhhh--cCccEEEccc--chhHHHHhhhcCccEEEEcCCchhHHH
Q 004092 157 DPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRN--IGVPVAILQT--GREKASFVNWLNYDGILVNSLEAKVVI 230 (774)
Q Consensus 157 GG~e~~v~~Lak~L~~~--G~eV~V~t~~~~~~~~~~~~--~gi~i~~l~~--~~~l~~~i~~~~~DIIhvhs~~~~~~l 230 (774)
-|--..+..|++.|.++ |+.+.+-+..........+. ..+.+..++. ......+++..+||++++...+..+.+
T Consensus 31 vGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnl 110 (186)
T PF04413_consen 31 VGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNL 110 (186)
T ss_dssp HHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES----HHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHH
Confidence 46667888999999987 77776655543222111111 1223333443 344577888899999888776653333
Q ss_pred HHHHhCCCCCCCEEE
Q 004092 231 SNIMQEPFKSLPLVW 245 (774)
Q Consensus 231 ~~Ll~~~~~~ipvI~ 245 (774)
. ......++|++.
T Consensus 111 l--~~a~~~~ip~~L 123 (186)
T PF04413_consen 111 L--REAKRRGIPVVL 123 (186)
T ss_dssp H--HH-----S-EEE
T ss_pred H--HHHhhcCCCEEE
Confidence 3 333456789764
No 219
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=42.95 E-value=1.5e+02 Score=30.39 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=35.2
Q ss_pred HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE-cCCcccccccccCccEEEEcCCC-HHHHHHHHHHHHHc
Q 004092 423 TADVVIYGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITN 491 (774)
Q Consensus 423 aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa-td~ggi~EiV~dg~~G~Lv~~~d-~e~La~aI~~Ll~d 491 (774)
.=|+++...... =..++.||.-+|+|+|+ .|....+..| .+.+|.+| .-.-...+..++.+
T Consensus 114 ~Pdliiv~dp~~---~~~AI~EA~kl~IP~IaivDTn~dp~~V-----dypIP~Ndds~~SI~li~~ll~~ 176 (204)
T PRK04020 114 EPDVVVVTDPRG---DAQAVKEAIEVGIPVVALCDTDNLTSNV-----DLVIPTNNKGRKALALVYWLLAR 176 (204)
T ss_pred CCCEEEEECCcc---cHHHHHHHHHhCCCEEEEEeCCCCcccC-----ceeECCCCchHHHHHHHHHHHHH
Confidence 445555444333 27899999999999999 3444445554 34555533 22333444445544
No 220
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=41.76 E-value=1.8e+02 Score=30.91 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=59.6
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
..|.+|+|++..-=....+..+-+.+.+.||.+.++...+.+... .....+...++|.|++.+.
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e----------------~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE----------------EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH----------------HHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH----------------HHHHHHHhcCCCEEEEecc
Confidence 468899999977777788889999999999999888766533221 1133556778999998876
Q ss_pred chh-HHHHHHHhCCCCCCCEEEEEc
Q 004092 225 EAK-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 225 ~~~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
... ..+..+... ++|+|..-.
T Consensus 66 ~~~~~~l~~~~~~---~iPvV~~~~ 87 (279)
T PF00532_consen 66 ENDDEELRRLIKS---GIPVVLIDR 87 (279)
T ss_dssp SCTCHHHHHHHHT---TSEEEEESS
T ss_pred cCChHHHHHHHHc---CCCEEEEEe
Confidence 553 344444422 689886544
No 221
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=41.14 E-value=1.5e+02 Score=25.84 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc---CCCEEE-cCCcc---cc
Q 004092 391 SVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RKPIIA-PDLSN---IR 461 (774)
Q Consensus 391 ~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~---G~PVIa-td~gg---i~ 461 (774)
...++...+..++.. |......++....+.. .|++++-...+. +-+..+++.+.. .+|+|. |+... ..
T Consensus 11 ~~~l~~~l~~~~~~~--v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 11 RELLEKLLERAGYEE--VTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHHHHHHTTEEE--EEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHH
T ss_pred HHHHHHHHHhCCCCE--EEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEecCCCCHHHHH
Confidence 355556666555532 5555555666666554 577777765553 566666666543 677664 43332 34
Q ss_pred cccccCccEEEEcCCCHHHHHHHHH
Q 004092 462 KYVDDRVNGYLFPKENIKALTHIIL 486 (774)
Q Consensus 462 EiV~dg~~G~Lv~~~d~e~La~aI~ 486 (774)
+.+..|..|++..|-+.++|.++|.
T Consensus 88 ~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 88 EALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHTTESEEEESSSSHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCHHHHHHhhC
Confidence 5567888999999999999998874
No 222
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=41.13 E-value=34 Score=30.24 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=29.2
Q ss_pred HHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 208 ~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
..++-..+.||||.|+.......-.++..+..+.++|+|-|
T Consensus 43 R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDH 83 (90)
T PF08288_consen 43 RNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDH 83 (90)
T ss_pred HHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeecc
Confidence 34455689999999987654333344444567899999999
No 223
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=41.09 E-value=3.1e+02 Score=26.44 Aligned_cols=76 Identities=14% Similarity=0.060 Sum_probs=50.9
Q ss_pred ccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc-CCccc---ccccccCccEEEEcCCCHHHHHHHHHHH
Q 004092 415 GDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIAP-DLSNI---RKYVDDRVNGYLFPKENIKALTHIILQV 488 (774)
Q Consensus 415 ~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat-d~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~L 488 (774)
.+....+. ..|++++-..... .-+..+++.+....|||.. ..... .+.+..|..|++..|.+.+.+.++|..+
T Consensus 37 ~~~l~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 115 (196)
T PRK10360 37 REALAGLPGRGVQVCICDISMPD-ISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTV 115 (196)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 34434443 3588887653332 3467777877777887663 33222 2345667889999999999999999988
Q ss_pred HHc
Q 004092 489 ITN 491 (774)
Q Consensus 489 l~d 491 (774)
+..
T Consensus 116 ~~~ 118 (196)
T PRK10360 116 ATG 118 (196)
T ss_pred HcC
Confidence 875
No 224
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=41.07 E-value=1.6e+02 Score=30.69 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=49.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~-~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
+|+++++++...-....+..+.+.+.+.||++.++.....+. .... ..+.. +-..++|.|++...
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~-------------~~i~~-~~~~~vdgiI~~~~ 66 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQI-------------AQLED-CAAWGADAILLGAV 66 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHH-------------HHHHH-HHHcCCCEEEEcCC
Confidence 477888877655556667778888999999998875432111 1110 01122 23458999988764
Q ss_pred chhHHHHHHHhCCCCCCCEEEEE
Q 004092 225 EAKVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 225 ~~~~~l~~Ll~~~~~~ipvI~ti 247 (774)
.....- .+......++|+|...
T Consensus 67 ~~~~~~-~~~~~~~~giPvV~~~ 88 (268)
T cd06306 67 SPDGLN-EILQQVAASIPVIALV 88 (268)
T ss_pred ChhhHH-HHHHHHHCCCCEEEec
Confidence 432221 1111124678988653
No 225
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=41.06 E-value=1.5e+02 Score=30.66 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=29.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~ 183 (774)
+|.++++++.......++..+.+++.+.||++.++...
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAP 38 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccC
Confidence 46788887766566667778888999999999987643
No 226
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.92 E-value=4.1e+02 Score=27.14 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=50.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|+++.+++...-.......+...+++.||++.++........ . ......+...++|.|++.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~~dgiii~~~~~ 66 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSP-E--------------RQWVERLSARRTDGVILVTPEL 66 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCCchHH-H--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 567777776656666777888888999999988765432210 0 0112223446899887755432
Q ss_pred hHHHHHHHhCCCCCCCEEEEEc
Q 004092 227 KVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
.......+ ...++|+|..-.
T Consensus 67 ~~~~~~~~--~~~~ipvV~i~~ 86 (270)
T cd06296 67 TSAQRAAL--RRTGIPFVVVDP 86 (270)
T ss_pred ChHHHHHH--hcCCCCEEEEec
Confidence 22222222 235689887543
No 227
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.64 E-value=89 Score=35.68 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=52.8
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC------cchhhhhhcCccEEEcccchhHH-------
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG------RAHEVWRNIGVPVAILQTGREKA------- 208 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~------~~~~~~~~~gi~i~~l~~~~~l~------- 208 (774)
.++|.+.+.++ |--+|-.+.+-.||++|.+.|+.|-+++...- ++....+..+++++.........
T Consensus 97 ~~~P~vImmvG-LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 97 KKPPTVILMVG-LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCCCeEEEEEe-ccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 44566655554 55667788899999999999999999987541 12233456677766653222222
Q ss_pred HHhhhcCccEEEEcCC
Q 004092 209 SFVNWLNYDGILVNSL 224 (774)
Q Consensus 209 ~~i~~~~~DIIhvhs~ 224 (774)
...+...+|+|++.+.
T Consensus 176 ~~ak~~~~DvvIvDTA 191 (451)
T COG0541 176 EKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHcCCCEEEEeCC
Confidence 2234466788887653
No 228
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=40.46 E-value=1.7e+02 Score=31.10 Aligned_cols=88 Identities=13% Similarity=-0.065 Sum_probs=51.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
+|+++.+.....-....+..+.+.+.+.||++.++.....+.....+ ....+...++|.|++....
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~--------------~i~~~~~~~~DgiIi~~~~ 66 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQ--------------IIEDLIAQGVDAIAVVPND 66 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH--------------HHHHHHhcCCCEEEEecCC
Confidence 46778887776677778888889999999999876433322111111 1112234579999987654
Q ss_pred hhHHHHHHHhCCCCCCCEEEEE
Q 004092 226 AKVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~ti 247 (774)
.......+......++|+|..-
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~v~ 88 (298)
T cd06302 67 PDALEPVLKKAREAGIKVVTHD 88 (298)
T ss_pred HHHHHHHHHHHHHCCCeEEEEc
Confidence 3211121111124568987653
No 229
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.38 E-value=1.5e+02 Score=30.58 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=49.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
+|+++.+.+...-....+..+.+.+++.||++.++....++ .... ..+..++. .++|.|++....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~~-------------~~l~~~~~-~~vdgii~~~~~ 65 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDD-AKQA-------------DQIDQAIA-QKVDAIIIQHGR 65 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCH-HHHH-------------HHHHHHHH-cCCCEEEEecCC
Confidence 46788887766666677888889999999999886543211 1000 11222333 489999887543
Q ss_pred hhHHHHHHHhCCCCCCCEEEE
Q 004092 226 AKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~t 246 (774)
.......+......++|+|..
T Consensus 66 ~~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 66 AEVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred hhhhHHHHHHHHHcCCCEEEe
Confidence 211111111112456897754
No 230
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=40.00 E-value=19 Score=25.64 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=18.1
Q ss_pred hcCCCCHHHHHHHHhhhhhccc
Q 004092 632 DQSHGTWDEVYRSAKRADRAKN 653 (774)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (774)
+--.|-|.+||.++.|....|.
T Consensus 4 dDvpGlW~~IY~qi~kn~aIKt 25 (33)
T PF08465_consen 4 DDVPGLWTEIYTQILKNPAIKT 25 (33)
T ss_pred CccccHHHHHHHHHHhCccccc
Confidence 3457999999999999877764
No 231
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=39.58 E-value=1.7e+02 Score=30.30 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=49.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHc---CCeEEEEEcCCC-cchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREI---GYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~---G~eV~V~t~~~~-~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
||+++++++........+..+.+.+.+. ||++.++..... +..... ..+..++ ..++|.|++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~-------------~~~~~~~-~~~vdgiIi 66 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQI-------------ADIRNLI-AQGVDAIII 66 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHH-------------HHHHHHH-HcCCCEEEE
Confidence 5788888887777788888888889999 996544433221 111111 1112223 348999998
Q ss_pred cCCchh---HHHHHHHhCCCCCCCEEEE
Q 004092 222 NSLEAK---VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 222 hs~~~~---~~l~~Ll~~~~~~ipvI~t 246 (774)
...... ..+..+. ..++|+|..
T Consensus 67 ~~~~~~~~~~~l~~~~---~~~iPvv~~ 91 (272)
T cd06300 67 NPASPTALNPVIEEAC---EAGIPVVSF 91 (272)
T ss_pred eCCChhhhHHHHHHHH---HCCCeEEEE
Confidence 664321 1222222 357898764
No 232
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.37 E-value=1.6e+02 Score=26.44 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++-+-.+.. +..++.+++++.+- ..++.+++. ..|+++..+... .-.-.+.+|+..|++|++
T Consensus 26 ~~v~~v~d~~~----~~~~~~~~~~~~~~--------~~~~~~ll~~~~~D~V~I~tp~~--~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 26 FEVVAVCDPDP----ERAEAFAEKYGIPV--------YTDLEELLADEDVDAVIIATPPS--SHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp EEEEEEECSSH----HHHHHHHHHTTSEE--------ESSHHHHHHHTTESEEEEESSGG--GHHHHHHHHHHTTSEEEE
T ss_pred cEEEEEEeCCH----HHHHHHHHHhcccc--------hhHHHHHHHhhcCCEEEEecCCc--chHHHHHHHHHcCCEEEE
Confidence 55543334443 55667777666541 246778887 688888776554 356688899999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 92 E 92 (120)
T PF01408_consen 92 E 92 (120)
T ss_dssp E
T ss_pred E
Confidence 4
No 233
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=38.40 E-value=90 Score=34.45 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=36.8
Q ss_pred CCCCeEEEEecCCCCChHH--HHHHHHHHHHHHcCCeEEEEEcCCCc
Q 004092 142 YRKPQLALVFPDLLIDPQQ--LQMVTIAIALREIGYAIQVYSLEDGR 186 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e--~~v~~Lak~L~~~G~eV~V~t~~~~~ 186 (774)
.+-|.=.++++++..||.. -.+..|++.|+++|+.+-|++-+.+.
T Consensus 43 ~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 43 YRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred ccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 4555567889999988775 47889999999999999999976643
No 234
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=38.33 E-value=2.4e+02 Score=28.30 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=64.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcC--CccHHHHHHHH---cC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQ--TFPEILVKALC---FR 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~q--Gfp~~llEAMA---~G 449 (774)
++++|+.... .....++...+..+.-. .+.......+....+. ..|++++-...... .-|..+++.+. ..
T Consensus 4 ~~Ilivdd~~--~~~~~l~~~L~~~~~~~-~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 4 MNVIIADDHP--IVLFGIRKSLEQIEWVN-VVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred eEEEEECCcH--HHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 6777777321 12244555554322111 1333333345555544 36888876533310 13566676664 34
Q ss_pred CCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |.... ..+.+..|..|++..+.++++|.++|..++..
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 56665 33332 23456778899999999999999999988865
No 235
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.18 E-value=3.2e+02 Score=30.54 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=75.9
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe--CCCCC---------chHHHHHHHHHHc
Q 004092 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTS---------NYSVVIEAIAHNL 401 (774)
Q Consensus 333 ~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG--G~~~e---------~Y~~~L~~la~~l 401 (774)
++++++..| --+- .+.+.+++.++.+++.. ++++--| -|-.. +-.+.|++..++.
T Consensus 99 ~~~l~vIAG-PCsI----Es~eq~l~~A~~lk~~g---------~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~ 164 (352)
T PRK13396 99 NHPVVVVAG-PCSV----ENEEMIVETAKRVKAAG---------AKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT 164 (352)
T ss_pred CCeEEEEEe-CCcc----cCHHHHHHHHHHHHHcC---------CCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc
Confidence 344556666 3333 56677788888887653 4555544 22111 1234566677788
Q ss_pred CCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHH
Q 004092 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL 481 (774)
Q Consensus 402 gL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~L 481 (774)
|++- +.-.-..+++..+...+|++-.+|..- |.|++ +-++-..|+||+.+. |. ..+++++
T Consensus 165 Gl~~--~tev~d~~~v~~~~~~~d~lqIga~~~-~n~~L-L~~va~t~kPVllk~-------------G~---~~t~ee~ 224 (352)
T PRK13396 165 GLGI--ITEVMDAADLEKIAEVADVIQVGARNM-QNFSL-LKKVGAQDKPVLLKR-------------GM---AATIDEW 224 (352)
T ss_pred CCcE--EEeeCCHHHHHHHHhhCCeEEECcccc-cCHHH-HHHHHccCCeEEEeC-------------CC---CCCHHHH
Confidence 8864 333333356666666699999999765 34554 444456799998764 11 1256777
Q ss_pred HHHHHHHHHc
Q 004092 482 THIILQVITN 491 (774)
Q Consensus 482 a~aI~~Ll~d 491 (774)
..++..+...
T Consensus 225 ~~A~e~i~~~ 234 (352)
T PRK13396 225 LMAAEYILAA 234 (352)
T ss_pred HHHHHHHHHc
Confidence 7777777765
No 236
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=37.96 E-value=5.6e+02 Score=29.01 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=54.4
Q ss_pred HHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccccc-cc-Ccc
Q 004092 394 IEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYV-DD-RVN 469 (774)
Q Consensus 394 L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV-~d-g~~ 469 (774)
.+.++....-.+ +|.+.-.. +++...+++||++|-.-++ .++=||+.|+|+|+-.+..=.+-+ ++ |..
T Consensus 255 a~~ia~~~~~~~-~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-------saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~ 326 (385)
T COG2327 255 ADAIAQLVLDSA-EILVSSDEYAEELGGILAACDLIVGMRLH-------SAIMALAFGVPAIAIAYDPKVRGLMQDLGLP 326 (385)
T ss_pred HHHHHhhcCCcc-ceEeecchHHHHHHHHhccCceEEeehhH-------HHHHHHhcCCCeEEEeecHHHHHHHHHcCCC
Confidence 334444333223 57666533 4667799999998865443 567899999999996654322211 11 222
Q ss_pred EEEEc--CCCHHHHHHHHHHHHHc
Q 004092 470 GYLFP--KENIKALTHIILQVITN 491 (774)
Q Consensus 470 G~Lv~--~~d~e~La~aI~~Ll~d 491 (774)
++..+ +.|.+.+.++..+.+.+
T Consensus 327 ~~~~~i~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 327 GFAIDIDPLDAEILSAVVLERLTK 350 (385)
T ss_pred cccccCCCCchHHHHHHHHHHHhc
Confidence 33333 45678888888777765
No 237
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=37.95 E-value=2e+02 Score=29.19 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=56.5
Q ss_pred eEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEcc--CcccHHHHHHHcCEEEEcC--------ccCcCCccHHHHH
Q 004092 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMA--AEGDVDSVLNTADVVIYGS--------FLEEQTFPEILVK 444 (774)
Q Consensus 377 v~LvIvG--G~~~e~Y~~~L~~la~~lgL~~~~V~flG--~~~dl~~~l~aaDI~V~PS--------~~E~qGfp~~llE 444 (774)
.+++++. ....+.|.+.+.+..+++|.....+.... ..+++.+.+..||+++++- .+.+.+.--.+.+
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~ 109 (210)
T cd03129 30 ARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILK 109 (210)
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHH
Confidence 6777777 33345666777788888888762222221 2367889999999999874 2221124446788
Q ss_pred HHHcCCCEEEcCCccc
Q 004092 445 ALCFRKPIIAPDLSNI 460 (774)
Q Consensus 445 AMA~G~PVIatd~ggi 460 (774)
+...|+|++.+..|.+
T Consensus 110 ~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 110 RVARGVVIGGTSAGAA 125 (210)
T ss_pred HHHcCCeEEEcCHHHH
Confidence 8888999999877654
No 238
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=37.31 E-value=2.3e+02 Score=29.19 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=55.0
Q ss_pred eEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEcc-----CcccHHHHHHHcCEEEEcC--------ccCcCCccHH
Q 004092 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-----AEGDVDSVLNTADVVIYGS--------FLEEQTFPEI 441 (774)
Q Consensus 377 v~LvIvG--G~~~e~Y~~~L~~la~~lgL~~~~V~flG-----~~~dl~~~l~aaDI~V~PS--------~~E~qGfp~~ 441 (774)
.+++++. +...+.|.+.+.+..+++|.....+.... ..+++.+.+..||++++.- .+.+.++--.
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~ 109 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDA 109 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHH
Confidence 4666666 33345666777777788888651222222 2256778999999988763 1221245557
Q ss_pred HHHHHHcCCCEEEcCCcccc
Q 004092 442 LVKALCFRKPIIAPDLSNIR 461 (774)
Q Consensus 442 llEAMA~G~PVIatd~ggi~ 461 (774)
+.++...|.|++.+..|.+.
T Consensus 110 l~~~~~~G~v~~G~SAGA~i 129 (217)
T cd03145 110 LRKVYRGGVVIGGTSAGAAV 129 (217)
T ss_pred HHHHHHcCCEEEEccHHHHh
Confidence 77888899999988766543
No 239
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=36.06 E-value=32 Score=28.21 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=18.7
Q ss_pred hhhHHHHHhhhh------cCCCCHHHHHHHHhh
Q 004092 621 RREEEELKDRID------QSHGTWDEVYRSAKR 647 (774)
Q Consensus 621 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 647 (774)
.--.+||+.|.+ ...-+||||.+.+|+
T Consensus 30 ~~~~~el~~R~~~~~~g~~~~i~~eev~~~ir~ 62 (63)
T TIGR02574 30 EAQKAELDRRLADYKADPSKASPWEEVRARIRK 62 (63)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHc
Confidence 444566666663 344689999998886
No 240
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.99 E-value=2e+02 Score=30.78 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=49.5
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc------chhhhhhcCccEEEcccchhH----HH--
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR------AHEVWRNIGVPVAILQTGREK----AS-- 209 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~------~~~~~~~~gi~i~~l~~~~~l----~~-- 209 (774)
..++++..+++ ....|=.+.+..||..|.+.|+.|.+++..... .....+..++++......... ..
T Consensus 69 ~~~~~vi~l~G-~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 69 ENKPNVILFVG-VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 34567777774 444577788999999999999999999865411 112224455554322211111 11
Q ss_pred -HhhhcCccEEEEcCCch
Q 004092 210 -FVNWLNYDGILVNSLEA 226 (774)
Q Consensus 210 -~i~~~~~DIIhvhs~~~ 226 (774)
.....++|+|++.++..
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 12235688888777654
No 241
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=35.31 E-value=2.1e+02 Score=24.13 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=40.6
Q ss_pred CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCC-CCCchHHHHHHHHHHcCCCCccEEEc
Q 004092 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGD-STSNYSVVIEAIAHNLHYPLGVVKHM 411 (774)
Q Consensus 334 ~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~-~~e~Y~~~L~~la~~lgL~~~~V~fl 411 (774)
...|++.|+|. + .+.+.+-.++.++..++|+ ..+|-||. ..-+ ....+.+++.+++- +.|.
T Consensus 3 g~rVli~GgR~-~----~D~~~i~~~Ld~~~~~~~~--------~~lvhGga~~GaD--~iA~~wA~~~gv~~--~~~~ 64 (71)
T PF10686_consen 3 GMRVLITGGRD-W----TDHELIWAALDKVHARHPD--------MVLVHGGAPKGAD--RIAARWARERGVPV--IRFP 64 (71)
T ss_pred CCEEEEEECCc-c----ccHHHHHHHHHHHHHhCCC--------EEEEECCCCCCHH--HHHHHHHHHCCCee--EEeC
Confidence 34677777453 4 5788899999999998887 44777754 4321 34467778777764 5443
No 242
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=34.71 E-value=68 Score=28.97 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=46.8
Q ss_pred EEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC
Q 004092 380 MILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (774)
Q Consensus 380 vIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ 457 (774)
+++| |-...-..+.+++.+++.|++- .|.= ....++...+..+|++++...... -+.-.--.+-..|+||..-+.
T Consensus 5 l~C~~GaSSs~la~km~~~a~~~gi~~-~i~a-~~~~e~~~~~~~~Dvill~PQv~~-~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 5 VLCAGGGTSGLLANALNKGAKERGVPL-EAAA-GAYGSHYDMIPDYDLVILAPQMAS-YYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcE-EEEE-eeHHHHHHhccCCCEEEEcChHHH-HHHHHHHHhhhcCCCEEEeCH
Confidence 4445 7555455677889999888864 3332 234688889999999887663321 122222234456889987653
No 243
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.68 E-value=36 Score=31.73 Aligned_cols=45 Identities=24% Similarity=0.210 Sum_probs=31.0
Q ss_pred ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc
Q 004092 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR 461 (774)
Q Consensus 415 ~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~ 461 (774)
+++.+++..+|++|--|..+ +.--.+-.|+.+|+|+|.--.|.-.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~--~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPD--AVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HH--HHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred hhHHHhcccCCEEEEcCChH--HhHHHHHHHHhCCCCEEEECCCCCH
Confidence 67888998999999887555 4556677889999999986666543
No 244
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=33.72 E-value=2.3e+02 Score=30.00 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=49.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~-~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
+|.++++++...-.......+.+.+++.||++.+++.... ...... .....+...++|.|++...
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~--------------~~i~~l~~~~vDgiIi~~~ 66 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQL--------------AQIEQCKSWGADAILLGTV 66 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH--------------HHHHHHHHcCCCEEEEecC
Confidence 4678888876666666667788888999999998765421 111111 0122234578999888653
Q ss_pred chhHHHHHHHhCCCCCCCEEEE
Q 004092 225 EAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 225 ~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
........+... ..++|+|..
T Consensus 67 ~~~~~~~~l~~~-~~~iPvV~~ 87 (295)
T TIGR02955 67 SPEALNHDLAQL-TKSIPVFAL 87 (295)
T ss_pred ChhhhhHHHHHH-hcCCCEEEE
Confidence 322111112111 236898864
No 245
>PRK09526 lacI lac repressor; Reviewed
Probab=33.68 E-value=3.6e+02 Score=28.99 Aligned_cols=89 Identities=11% Similarity=0.212 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++++...-....+..+.+.+.+.||++.++.......... ......+...++|.|++.
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~--------------~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMVERSGVEAC--------------QAAVNELLAQRVSGVIIN 127 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHH--------------HHHHHHHHhcCCCEEEEe
Confidence 345689999887544445667778888899999998876432111100 011222345689998885
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
.+........+... ..++|+|+.
T Consensus 128 ~~~~~~~~~~~~~~-~~~iPvV~~ 150 (342)
T PRK09526 128 VPLEDADAEKIVAD-CADVPCLFL 150 (342)
T ss_pred cCCCcchHHHHHhh-cCCCCEEEE
Confidence 33221122233322 346898765
No 246
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=33.44 E-value=2.2e+02 Score=30.23 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEE-cCCcccccccccCccEEEEcCCC-HHHHHHHHHHHHHc
Q 004092 421 LNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITN 491 (774)
Q Consensus 421 l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa-td~ggi~EiV~dg~~G~Lv~~~d-~e~La~aI~~Ll~d 491 (774)
+..-|++|...... =..++.||-.+|+|||+ .|....+++| -+.+|.+| .-.-...|..+|..
T Consensus 116 f~~P~llIV~Dp~~---d~qAI~EA~~lnIPvIal~DTds~p~~V-----Dy~IP~Ndds~~SI~li~~lLar 180 (249)
T PTZ00254 116 FMEPRLLIVTDPRT---DHQAIREASYVNIPVIALCDTDSPLEYV-----DIAIPCNNRGKESIALMYWLLAR 180 (249)
T ss_pred cCCCCEEEEeCCCc---chHHHHHHHHhCCCEEEEecCCCCcccC-----ceeeCCCCchHHHHHHHHHHHHH
Confidence 34455655544222 26799999999999999 4544445554 24455433 22333444455544
No 247
>PRK10867 signal recognition particle protein; Provisional
Probab=33.28 E-value=1.9e+02 Score=33.35 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=32.1
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLED 184 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~-G~eV~V~t~~~ 184 (774)
.+|.+.++++ +...|=.+.+..||..|.+. |+.|.+++...
T Consensus 98 ~~p~vI~~vG-~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 98 KPPTVIMMVG-LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCCEEEEEEC-CCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 4567777665 55567778889999999998 99999998754
No 248
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=33.08 E-value=34 Score=34.49 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 004092 478 IKALTHIILQVITNGKISPFARNIASIGRR 507 (774)
Q Consensus 478 ~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~ 507 (774)
...+.-.+.-++.+ |--...++++++.
T Consensus 68 lklLLiIvFllLTa---PVaSHaIARAAyr 94 (197)
T PRK12585 68 ARVLLAVLFIFLTT---PVASHLINRAAYD 94 (197)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 44555555566667 6655556555543
No 249
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=33.02 E-value=3.2e+02 Score=27.91 Aligned_cols=86 Identities=20% Similarity=0.285 Sum_probs=51.4
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|++|+++....-....+..+.+.+.+.||++.++.....+..... .....+...++|.|++.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~vdgiii~~~~~ 67 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVTLSMLAEADEEALR--------------AAVRRLLAQRVDGVIVNAPLD 67 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHH--------------HHHHHHHhcCCCEEEEeCCCC
Confidence 677888777656666778888999999999998875432111110 112223456799998765433
Q ss_pred hHHHHHHHhCCCCCCCEEEEEc
Q 004092 227 KVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
... . +......++|+|..-.
T Consensus 68 ~~~-~-~~~~~~~~ipvv~~~~ 87 (264)
T cd01574 68 DAD-A-ALAAAPADVPVVFVDG 87 (264)
T ss_pred ChH-H-HHHHHhcCCCEEEEec
Confidence 222 1 1111245689887543
No 250
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=32.97 E-value=68 Score=28.61 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=46.7
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHH--HcCCCEEEc
Q 004092 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKAL--CFRKPIIAP 455 (774)
Q Consensus 379 LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAM--A~G~PVIat 455 (774)
++++| |-...-.-..+++.+++.|++- .|.-.+. .++......+|++++..... +-..-++.. ..|+||+.-
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~-~v~a~~~-~~~~~~~~~~Dvill~pqi~---~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPV-KIAAGSY-GAAGEKLDDADVVLLAPQVA---YMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcE-EEEEecH-HHHHhhcCCCCEEEECchHH---HHHHHHHHHhhhcCCCEEEe
Confidence 34444 6544445567888888888875 5555543 46777778899998876443 223334444 457799886
Q ss_pred CC
Q 004092 456 DL 457 (774)
Q Consensus 456 d~ 457 (774)
+.
T Consensus 82 ~~ 83 (95)
T TIGR00853 82 NG 83 (95)
T ss_pred Ch
Confidence 53
No 251
>COG1647 Esterase/lipase [General function prediction only]
Probab=32.56 E-value=1.2e+02 Score=31.75 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=56.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC-CcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~-~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
++++++ ..|...-+..|++.|++.||.|.+=...+ +.....+-..+..-. +.........+....||=|.+....
T Consensus 18 VLllHG---FTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW-~~~v~d~Y~~L~~~gy~eI~v~GlS 93 (243)
T COG1647 18 VLLLHG---FTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW-WEDVEDGYRDLKEAGYDEIAVVGLS 93 (243)
T ss_pred EEEEec---cCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH-HHHHHHHHHHHHHcCCCeEEEEeec
Confidence 445554 56788889999999999999987644422 333333322221100 0111122345666789988888887
Q ss_pred hhHHHHHHHhCCCCCCCEEE
Q 004092 226 AKVVISNIMQEPFKSLPLVW 245 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~ 245 (774)
.+++++..++..+.-.++|.
T Consensus 94 mGGv~alkla~~~p~K~iv~ 113 (243)
T COG1647 94 MGGVFALKLAYHYPPKKIVP 113 (243)
T ss_pred chhHHHHHHHhhCCccceee
Confidence 77788777766454333443
No 252
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=32.27 E-value=1.9e+02 Score=33.30 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
.+|.+.++++ +...|=.+.+..||..|.+.|+.|.+++...
T Consensus 98 ~~~~vi~lvG-~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 98 GKQNVIMFVG-LQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 4566666666 3445677788999999999999999998754
No 253
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.13 E-value=2.4e+02 Score=25.43 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 161 LQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 161 ~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
.-+..++..|++.||+|.++-..... ..+...+...+||+|.+..
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDANVPP------------------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEc
Confidence 34677889999999999987543211 3445566778999998876
No 254
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.05 E-value=2.3e+02 Score=29.81 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=51.1
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|+++++++...-....+..+.+.+.+.||++.++....++.. .. ..+.. +...++|.|++.....
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~~-------------~~i~~-~~~~~vdgiii~~~~~ 66 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGDPAK-QI-------------SQIEN-MIAKGVDVLVIAPVDG 66 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHH-HH-------------HHHHH-HHHcCCCEEEEecCCh
Confidence 678888877666777788888889999999998765432211 10 11122 2345899888764332
Q ss_pred hHHHHHHHhCCCCCCCEEEEEc
Q 004092 227 KVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
......+......++|+|..-.
T Consensus 67 ~~~~~~l~~l~~~~ipvV~~~~ 88 (288)
T cd01538 67 EALASAVEKAADAGIPVIAYDR 88 (288)
T ss_pred hhHHHHHHHHHHCCCCEEEECC
Confidence 1111121111235689887543
No 255
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.91 E-value=67 Score=28.59 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=47.9
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHH--HHHcCCCEEEc
Q 004092 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK--ALCFRKPIIAP 455 (774)
Q Consensus 379 LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llE--AMA~G~PVIat 455 (774)
++++| |-...-.-+.+++.+++.|++- .|...+. .++......+|++++..... +-..-++ +.-.++||..-
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~-~v~~~~~-~~~~~~~~~~Diil~~Pqv~---~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDA-EIEAVPE-SELEEYIDDADVVLLGPQVR---YMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCce-EEEEecH-HHHHHhcCCCCEEEEChhHH---HHHHHHHHHhccCCCcEEEc
Confidence 45666 6555445567888889888875 5655553 46667788999988876433 2223333 34578898876
Q ss_pred CC
Q 004092 456 DL 457 (774)
Q Consensus 456 d~ 457 (774)
+.
T Consensus 78 ~~ 79 (96)
T cd05564 78 DM 79 (96)
T ss_pred Ch
Confidence 53
No 256
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=31.90 E-value=5.6e+02 Score=25.99 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=51.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|++|++++...-.......+.+++++.||++.++....++.. . ......+...++|.|++.....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~vdgiii~~~~~ 66 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYGVLLGDTRSDPER-E--------------QEYLDLLRRKQADGIILLDGSL 66 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCCChHH-H--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 677888887667777888888999999999987764432211 0 1112344556899888865433
Q ss_pred hHHHHHHHhCCCCCCCEEEEE
Q 004092 227 KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~ti 247 (774)
........ ..++|+|..-
T Consensus 67 ~~~~~~~~---~~~ipvv~~~ 84 (267)
T cd06284 67 PPTALTAL---AKLPPIVQAC 84 (267)
T ss_pred CHHHHHHH---hcCCCEEEEe
Confidence 21211222 2478988653
No 257
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=31.59 E-value=47 Score=34.18 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=22.5
Q ss_pred hhhhhhhhcc-hhHHHHHHHHHHHHHHHHHHHh
Q 004092 37 RFSRFLFFKK-LDYLLWICTVAVFLFFVVIFQL 68 (774)
Q Consensus 37 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 68 (774)
|+-++= .+| .|.|+|..+++|||.|++.+++
T Consensus 205 rve~y~-ksk~s~wf~~~miI~v~~sFVsMili 236 (244)
T KOG2678|consen 205 RVEKYD-KSKLSYWFYITMIIFVILSFVSMILI 236 (244)
T ss_pred HHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444554 344 7889999999999888776655
No 258
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=31.42 E-value=4.2e+02 Score=29.74 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=66.8
Q ss_pred HHHHHhCCC--CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHH
Q 004092 323 TVRVKMGFK--PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHN 400 (774)
Q Consensus 323 ~lR~~lgl~--~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~ 400 (774)
.+.+++|++ ++..+|..++ |.. -.+..+++++....+ ++.++|-.|... ..+......
T Consensus 169 ~~~~~lg~~~~~~~~~vSLF~----Ye~--~al~~ll~~~~~~~~----------pv~lLvp~Gr~~----~~v~~~l~~ 228 (371)
T TIGR03837 169 ALLRRLGVGPEPDALLVSLFC----YEN--AALPALLDALAQSGS----------PVHLLVPEGRAL----AAVAAWLGD 228 (371)
T ss_pred HHHHHcCCCCCCCCeEEEEEe----cCC--hhHHHHHHHHHhCCC----------CeEEEecCCccH----HHHHHHhCc
Confidence 355677885 4565665555 430 336667777765432 277777777554 333333210
Q ss_pred --------cCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC
Q 004092 401 --------LHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (774)
Q Consensus 401 --------lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ 457 (774)
....+-.|.++.++ ++..+++-.||+-+.- .|. +++-|.-+|+|.|=--+
T Consensus 229 ~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVR--GED-----SFVRAqWAgkPfvWhIY 288 (371)
T TIGR03837 229 ALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFVR--GED-----SFVRAQWAGKPFVWHIY 288 (371)
T ss_pred cccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEee--chh-----HHHHHHHcCCCceeecc
Confidence 11122246677765 7889999999996653 454 78899999999986533
No 259
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=30.85 E-value=2.1e+02 Score=30.86 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=27.3
Q ss_pred cHHHHHH--HcCEEEEcCccCcCCccHHHHHHHH--cCCCEEE
Q 004092 416 DVDSVLN--TADVVIYGSFLEEQTFPEILVKALC--FRKPIIA 454 (774)
Q Consensus 416 dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA--~G~PVIa 454 (774)
++.+.+. .+|++|=.|.... -|.--++++|+ |..|+|-
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g-~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGG-AFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCC-CCCHHHHHHHHhcCCCCEEE
Confidence 4556666 6788888875432 58888899998 5778775
No 260
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.79 E-value=2.8e+02 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=29.9
Q ss_pred eEEEEecCC-CCChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 004092 146 QLALVFPDL-LIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (774)
Q Consensus 146 rialV~~~L-~~GG~e~~v~~Lak~L~~~G~eV~V~t~~ 183 (774)
+|+++.+.. ...-....+..+.+.+.+.|+++.++...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~ 39 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPE 39 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 477888877 66667777788888899999999887654
No 261
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=30.37 E-value=2e+02 Score=31.16 Aligned_cols=100 Identities=8% Similarity=0.059 Sum_probs=58.4
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHH--cCCeEEEEEcCCCcchhhhhhcCccEEEcccc--------hhHHHH
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALRE--IGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKASF 210 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~--~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~--------~~l~~~ 210 (774)
.-+++||++.... +|. -+..|..+.+. .+++|.++.....+.....+..++++..++.. ..+...
T Consensus 86 ~~~~~ri~vl~Sg---~g~--nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T PRK13011 86 PAARPKVLIMVSK---FDH--CLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDV 160 (286)
T ss_pred cccCceEEEEEcC---Ccc--cHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHH
Confidence 4456788887765 233 34455555443 35677776555545555577889997664311 123445
Q ss_pred hhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcC
Q 004092 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (774)
Q Consensus 211 i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg 249 (774)
++..++|+|++-..... +-..++.. + ..-++.+|.
T Consensus 161 l~~~~~Dlivlagy~~i-l~~~~l~~-~--~~~iiNiHp 195 (286)
T PRK13011 161 VEESGAELVVLARYMQV-LSPELCRK-L--AGRAINIHH 195 (286)
T ss_pred HHHhCcCEEEEeChhhh-CCHHHHhh-c--cCCeEEecc
Confidence 77789999998776552 22333322 2 124788995
No 262
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=30.36 E-value=3.3e+02 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=34.4
Q ss_pred CCCCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEc
Q 004092 139 RFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSL 182 (774)
Q Consensus 139 r~~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~ 182 (774)
-...-+..|+++.+++...-....+..+.+.+.+.||++.++..
T Consensus 21 ~~~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~ 64 (295)
T PRK10653 21 ANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 64 (295)
T ss_pred CccccCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecC
Confidence 33445667899998877666777888899999999999988654
No 263
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=30.22 E-value=71 Score=31.45 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=28.7
Q ss_pred HHHHHHH-cCEEEEcCc----cCcCCccHHHHHHHHcCCCEEEc
Q 004092 417 VDSVLNT-ADVVIYGSF----LEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 417 l~~~l~a-aDI~V~PS~----~E~qGfp~~llEAMA~G~PVIat 455 (774)
+..-+.. +|++|+.-+ .+..||--.+.+|++.|+||+++
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 3444444 899998752 34346778899999999999986
No 264
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.21 E-value=2.8e+02 Score=28.55 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=51.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc-
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE- 225 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~- 225 (774)
|+++.+++...-.......+.+.+.+.||++.+++....+.. .......+...++|.|++....
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~---------------~~~~i~~~~~~~~dgiii~~~~~ 66 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSLVLCATRNRPER---------------ELTYLRWLDTNHVDGLIFVTNRP 66 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH---------------HHHHHHHHHHCCCCEEEEeCCCC
Confidence 677888766555566777888899999999988865432110 0112334456789999886532
Q ss_pred hhHHHHHHHhCCCCCCCEEEEEc
Q 004092 226 AKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
....+..+. ..++|+|+.-.
T Consensus 67 ~~~~~~~~~---~~~~pvV~i~~ 86 (269)
T cd06293 67 DDGALAKLI---NSYGNIVLVDE 86 (269)
T ss_pred CHHHHHHHH---hcCCCEEEECC
Confidence 212333333 23578877543
No 265
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=30.07 E-value=3.7e+02 Score=29.17 Aligned_cols=57 Identities=25% Similarity=0.435 Sum_probs=42.2
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCcc
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP 197 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~ 197 (774)
|.-.+.+++|+++--+.--+--+--+.+.|.+.||.|-|++..+-.....+..+|-|
T Consensus 13 GWd~lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQPdw~~~~df~~lG~P 69 (302)
T PF08497_consen 13 GWDELDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQPDWRSPEDFKRLGRP 69 (302)
T ss_pred CCccccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHhCCC
Confidence 445567899999776554444455688999999999999998775555566666666
No 266
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=29.80 E-value=3.6e+02 Score=27.86 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=50.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.++++++...-....+..+...+.+.||++.+++..... . . ...+...+...++|.|++.....
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~-~-~-------------~~~~~~~l~~~~vdgvi~~~~~~ 66 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLEQRYDLALFPLLSLA-R-L-------------KRYLESTTLAYLTDGLLLASYDL 66 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCcH-H-H-------------HHHHHHHHHhcCCCEEEEecCcc
Confidence 5677887665455667788889999999999998754211 0 0 01112234456899988876433
Q ss_pred hHHHHHHHhCCCCCCCEEEEE
Q 004092 227 KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~ti 247 (774)
.......+ ...++|+|..-
T Consensus 67 ~~~~~~~l--~~~~iPvv~~~ 85 (269)
T cd06297 67 TERLAERR--LPTERPVVLVD 85 (269)
T ss_pred ChHHHHHH--hhcCCCEEEEc
Confidence 22222222 23468987654
No 267
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=29.38 E-value=3.1e+02 Score=28.74 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=54.6
Q ss_pred eEEEEEe--C--CCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcC--------ccCcCCccHHHHH
Q 004092 377 IKVMILS--G--DSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS--------FLEEQTFPEILVK 444 (774)
Q Consensus 377 v~LvIvG--G--~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS--------~~E~qGfp~~llE 444 (774)
-+++++- + ...+.|.+..++..+++|.. |..+-..++..+.+..||++.++- .+...|+--.+-|
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~---v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE---VTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE---EEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHH
Confidence 3666666 3 23456677777788877775 333333356778899999887763 1111256667789
Q ss_pred HHHcCCCEEEcCCccc
Q 004092 445 ALCFRKPIIAPDLSNI 460 (774)
Q Consensus 445 AMA~G~PVIatd~ggi 460 (774)
+...|+|++.+-.|.+
T Consensus 109 ~~~~G~~~~G~SAGAi 124 (233)
T PRK05282 109 AVKNGTPYIGWSAGAN 124 (233)
T ss_pred HHHCCCEEEEECHHHH
Confidence 9999999999887764
No 268
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=29.30 E-value=4.5e+02 Score=27.95 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++.+...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdGiI~~ 119 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQR-M--------------NRNLETLMQKRVDGLLLL 119 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH-H--------------HHHHHHHHHcCCCEEEEe
Confidence 3457889998876555666777888899999999988654322111 0 011122344679988886
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
...........+.. ..++|+|..
T Consensus 120 ~~~~~~~~~~~l~~-~~~iPvV~i 142 (327)
T PRK10423 120 CTETHQPSREIMQR-YPSVPTVMM 142 (327)
T ss_pred CCCcchhhHHHHHh-cCCCCEEEE
Confidence 54321122222222 346898764
No 269
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.97 E-value=3.2e+02 Score=28.73 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=26.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEE
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYS 181 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t 181 (774)
||++|.++....-...++..+.+.+.+.||++.++.
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 36 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATT 36 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEec
Confidence 467788876644445666677888999999997553
No 270
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=28.88 E-value=4.1e+02 Score=28.99 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=52.4
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~-~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
..+|.+|.++............+.+.+.+.||++.++..... +..... ..+.. +...++|.|++.
T Consensus 46 t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~-------------~~i~~-l~~~~vdgIIl~ 111 (343)
T PRK10936 46 AWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQ-------------QQLEQ-CVAWGADAILLG 111 (343)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH-------------HHHHH-HHHhCCCEEEEe
Confidence 578899999877666777777888889999999988765321 111110 11122 234579988876
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
..........+ .....++|+|..
T Consensus 112 ~~~~~~~~~~l-~~~~~giPvV~~ 134 (343)
T PRK10936 112 AVTPDGLNPDL-ELQAANIPVIAL 134 (343)
T ss_pred CCChHHhHHHH-HHHHCCCCEEEe
Confidence 54332211222 112456898854
No 271
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=28.79 E-value=2.6e+02 Score=28.60 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=48.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|++|++++.-.-.......+.+.+.+.||++.++.....+ .... .....+...++|.|++.....
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~-~~~~--------------~~~~~~~~~~~dgii~~~~~~ 66 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYELTVLDAQNDA-AKQL--------------NDIEDLITRGVDAIIINPTDS 66 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCceEEecCCCCCH-HHHH--------------HHHHHHHHcCCCEEEEcCCCh
Confidence 5678887766666777788889999999999876543211 1110 111223345799988765433
Q ss_pred hHHHHHHHhCCCCCCCEEEE
Q 004092 227 KVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~t 246 (774)
......+......++|+|..
T Consensus 67 ~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 67 DAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHHHHHHCCCcEEEE
Confidence 21112221112346888765
No 272
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.10 E-value=5.7e+02 Score=30.17 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=75.4
Q ss_pred EEEccCcccHHHHHHHcCEE-EEcC-----ccCcCCccHHHHHHHHcCC-CEEEcCCcc--cccccccCccEEEEcCCCH
Q 004092 408 VKHMAAEGDVDSVLNTADVV-IYGS-----FLEEQTFPEILVKALCFRK-PIIAPDLSN--IRKYVDDRVNGYLFPKENI 478 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI~-V~PS-----~~E~qGfp~~llEAMA~G~-PVIatd~gg--i~EiV~dg~~G~Lv~~~d~ 478 (774)
-...|..++-.++++.+... ++|. ..+ +|-.-++||+..|+ |||..+.-- ..|+++=....+++|..-.
T Consensus 401 walcg~~~~RrqLlk~STF~lilpp~d~rv~S~--~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~ 478 (907)
T KOG2264|consen 401 WALCGERERRRQLLKSSTFCLILPPGDPRVISE--MFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARL 478 (907)
T ss_pred hhhccchHHHHHHhccceeEEEecCCCcchhhH--HHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCcccc
Confidence 56677777888888888764 4552 123 56667889999995 888876543 3467765666777775444
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhcCCC
Q 004092 479 KALTHIILQVITNGKISPFARNIASIGRRSVKNL--MALETIEGYAMLLENVLKLPS 533 (774)
Q Consensus 479 e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~f--s~~~~a~~y~~L~e~ll~~~~ 533 (774)
.+ +.-+.+.++| .+ .-.|.+.|+-.-+.| +...++......+..-+..|.
T Consensus 479 tE-~HFllrs~~d---sD-ll~mRRqGRl~wEtYls~~~~~~~tvlA~lR~rlqIP~ 530 (907)
T KOG2264|consen 479 TE-AHFLLRSFED---SD-LLEMRRQGRLFWETYLSDRHLLARTVLAALRYRLQIPT 530 (907)
T ss_pred ch-HHHHHHhcch---hh-HHHHHhhhhhhHHHHhhHHHHHHHHHHHHHHHhhCCCC
Confidence 33 3445566666 43 445888888777665 344455555555555555444
No 273
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=28.04 E-value=3.2e+02 Score=27.17 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=53.9
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+++|+++++. .|-.+.-+......|.+.|++|.+.+...+.........|+.+..- ..+.. +...++|+|++.
T Consensus 1 ~~~~~~il~~---~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d---~~l~~-~~~~~~D~l~ip 73 (196)
T PRK11574 1 MSASALVCLA---PGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLAD---APLVE-VADGDFDVIVLP 73 (196)
T ss_pred CCceEEEEeC---CCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCC---CCHHH-CCCCCCCEEEEC
Confidence 4677877776 4555666777888888899999998864321111122334333221 11111 223478998886
Q ss_pred CCch-------h-HHHHHHHhCCCCCCCEEEEEcCc
Q 004092 223 SLEA-------K-VVISNIMQEPFKSLPLVWTIHEG 250 (774)
Q Consensus 223 s~~~-------~-~~l~~Ll~~~~~~ipvI~tiHg~ 250 (774)
.... . ....++......+.++...+||.
T Consensus 74 GG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 109 (196)
T PRK11574 74 GGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAP 109 (196)
T ss_pred CCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhH
Confidence 5321 0 12222222223456666666653
No 274
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=27.96 E-value=1.6e+02 Score=29.16 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=34.5
Q ss_pred eEEEEEe-CCC-CCchHHHHHHHHHHcCCCCccEEEccCc-ccHHHHHHHcCEEEEcCccC
Q 004092 377 IKVMILS-GDS-TSNYSVVIEAIAHNLHYPLGVVKHMAAE-GDVDSVLNTADVVIYGSFLE 434 (774)
Q Consensus 377 v~LvIvG-G~~-~e~Y~~~L~~la~~lgL~~~~V~flG~~-~dl~~~l~aaDI~V~PS~~E 434 (774)
-+++|+| |.. . ..+.....+.+. +|...... +++.+.+..||++|..+...
T Consensus 45 k~vlViG~G~~~G----~~~a~~L~~~g~---~V~v~~r~~~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 45 KKVVVVGRSNIVG----KPLAALLLNRNA---TVTVCHSKTKNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred CEEEEECCcHHHH----HHHHHHHhhCCC---EEEEEECCchhHHHHHhhCCEEEEcCCCC
Confidence 6999999 753 3 223333333333 36666655 78999999999999887443
No 275
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=27.85 E-value=3.2e+02 Score=29.72 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=54.5
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
.+.+|+++.+.+...--...+..+-+.+.+.||++.++.....+ .... .....+...++|.|++.
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~-~~~~--------------~~i~~l~~~~vDGiIi~ 88 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNE-ETQM--------------SQIENMINRGVDVLVII 88 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCH-HHHH--------------HHHHHHHHcCCCEEEEe
Confidence 57889999998877777778888888999999999987653321 1010 11122334589999886
Q ss_pred CCchh---HHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAK---VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~---~~l~~Ll~~~~~~ipvI~t 246 (774)
..... ..+..+. ..++|+|..
T Consensus 89 ~~~~~~~~~~l~~~~---~~~iPvV~i 112 (330)
T PRK10355 89 PYNGQVLSNVIKEAK---QEGIKVLAY 112 (330)
T ss_pred CCChhhHHHHHHHHH---HCCCeEEEE
Confidence 54321 1222222 345888865
No 276
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=27.84 E-value=89 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004092 49 YLLWICTVAVFLFFVVIFQL 68 (774)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~ 68 (774)
||.||+.+...+.+.++-.+
T Consensus 3 YfaWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 3 YFAWILGTLLACAFGVLNAM 22 (30)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 89999988777777766544
No 277
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=27.83 E-value=2.8e+02 Score=29.78 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=48.4
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHc-C-CeEEEEEcCCCc------chhhhhhcCccEEEcccchhHHHHhhh-c
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREI-G-YAIQVYSLEDGR------AHEVWRNIGVPVAILQTGREKASFVNW-L 214 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~-G-~eV~V~t~~~~~------~~~~~~~~gi~i~~l~~~~~l~~~i~~-~ 214 (774)
++++..+++. ...|=.+.+..|+..+... | +.|.+++..... .....+..++++........+...+.. .
T Consensus 193 ~~~vi~~vGp-tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGP-TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 4556666654 4456677788899998876 5 999999976521 111123356666544443344444443 4
Q ss_pred CccEEEEcCC
Q 004092 215 NYDGILVNSL 224 (774)
Q Consensus 215 ~~DIIhvhs~ 224 (774)
++|+|++.++
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 5888887654
No 278
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=27.58 E-value=9.7e+02 Score=27.42 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=54.8
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHH-HHHHcCCCEEEcC
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV-KALCFRKPIIAPD 456 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~ll-EAMA~G~PVIatd 456 (774)
+++|+.-.. +.-++++++++..- + ..+++..++..+|+++..+.....-.+...+ +|+...+..+.-|
T Consensus 204 ~i~IaNRT~-----erA~~La~~~~~~~--~----~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livD 272 (414)
T COG0373 204 KITIANRTL-----ERAEELAKKLGAEA--V----ALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVD 272 (414)
T ss_pred EEEEEcCCH-----HHHHHHHHHhCCee--e----cHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEE
Confidence 667776333 55667888777221 1 2369999999999999876433223444444 4445545567778
Q ss_pred Cccccccccc---CccEEEEcCCCHHHHH
Q 004092 457 LSNIRKYVDD---RVNGYLFPKENIKALT 482 (774)
Q Consensus 457 ~ggi~EiV~d---g~~G~Lv~~~d~e~La 482 (774)
.+-++++-.+ -.+-++++-+|.+.++
T Consensus 273 iavPRdie~~v~~l~~v~l~~iDDL~~iv 301 (414)
T COG0373 273 IAVPRDVEPEVGELPNVFLYTIDDLEEIV 301 (414)
T ss_pred ecCCCCCCccccCcCCeEEEehhhHHHHH
Confidence 7777765332 1223566544444433
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.36 E-value=2.7e+02 Score=31.69 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=52.9
Q ss_pred CCCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc--hhhh----hhcCccEEEcccchhHHHHhhh
Q 004092 140 FGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA--HEVW----RNIGVPVAILQTGREKASFVNW 213 (774)
Q Consensus 140 ~~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~--~~~~----~~~gi~i~~l~~~~~l~~~i~~ 213 (774)
+...+.++.++++. ...|=.+.+..+|..+...|+.|.+++...... ...| +..++++........+...++.
T Consensus 201 ~~~~~~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~ 279 (407)
T PRK12726 201 FDLSNHRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQY 279 (407)
T ss_pred ceecCCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHH
Confidence 34556777777775 345677788888988989999999998765221 2222 3455665544333333333332
Q ss_pred ----cCccEEEEcCCch
Q 004092 214 ----LNYDGILVNSLEA 226 (774)
Q Consensus 214 ----~~~DIIhvhs~~~ 226 (774)
.++|+|++.++..
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 3578888877644
No 280
>PRK09701 D-allose transporter subunit; Provisional
Probab=27.31 E-value=4.1e+02 Score=28.41 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=52.8
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC-CcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~-~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
+...|+++.+++...-.......+.+.+.+.||++.++.... .+..... .....+...++|.|++
T Consensus 23 ~~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~--------------~~i~~l~~~~vDgiIi 88 (311)
T PRK09701 23 AAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQL--------------QLFEDLSNKNYKGIAF 88 (311)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHH--------------HHHHHHHHcCCCEEEE
Confidence 345889999988766677777888888999999998863221 1111010 0111233457998888
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 222 NSLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 222 hs~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
...........+......++|+|..-+
T Consensus 89 ~~~~~~~~~~~l~~~~~~giPvV~~~~ 115 (311)
T PRK09701 89 APLSSVNLVMPVARAWKKGIYLVNLDE 115 (311)
T ss_pred eCCChHHHHHHHHHHHHCCCcEEEeCC
Confidence 654321111111111235689876543
No 281
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.30 E-value=3.4e+02 Score=27.96 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=28.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~ 183 (774)
+|++|.+++...-.......+...+.+.|+++.++...
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 38 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGYDAVELSAE 38 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 47788887765555666677778888999999887543
No 282
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=27.27 E-value=3.4e+02 Score=28.26 Aligned_cols=85 Identities=9% Similarity=0.058 Sum_probs=48.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
+|.+|.+.+...-....+..+.+.+.+.||++.++... .+ ..... ....+...++|.|++....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~-~~~~~--------------~i~~~~~~~~dgiii~~~~ 64 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFTVVKIDVP-DG-EKVLS--------------AIDNLGAQGAKGFVICVPD 64 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHcCCEEEEccCC-CH-HHHHH--------------HHHHHHHcCCCEEEEccCc
Confidence 46778887765566677778889999999999876543 11 11111 1112334679988886543
Q ss_pred hhHHHHHHHhCCCCCCCEEEE
Q 004092 226 AKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~t 246 (774)
....-..+......++|+|..
T Consensus 65 ~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 65 VKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred hhhhHHHHHHHHhCCCeEEEe
Confidence 211111111112457898864
No 283
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=27.12 E-value=4.2e+02 Score=27.28 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=48.1
Q ss_pred eEEEEecC--CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 146 QLALVFPD--LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 146 rialV~~~--L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
||++|++. +...-....+..+.+.+.+.||++.+.... ++.. .. .....+...++|.|++..
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~-~~~~-~~--------------~~~~~l~~~~vdgiii~~ 64 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVESV-EDAD-YE--------------PNLRQLAAQGYDLIFGVG 64 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCceEEEEecC-CHHH-HH--------------HHHHHHHHcCCCEEEECC
Confidence 57788875 444455566677778889999998887544 2211 00 112223446799888865
Q ss_pred CchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 224 LEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 224 ~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
......+..++.. ..++|+|..-+
T Consensus 65 ~~~~~~~~~~~~~-~~~ipvv~~~~ 88 (260)
T cd06304 65 FGFMDAVEKVAKE-YPDVKFAIIDG 88 (260)
T ss_pred cchhHHHHHHHHH-CCCCEEEEecC
Confidence 4322222233321 23578776533
No 284
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=27.11 E-value=2.9e+02 Score=29.34 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=53.6
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEccc-----chhHHHHhhhcCccEEEEcC
Q 004092 149 LVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT-----GREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 149 lV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~-----~~~l~~~i~~~~~DIIhvhs 223 (774)
+++.+....|-.+.+..+...+...+. .+++..+..... ..++....+.. +.......-..+||+|++-.
T Consensus 83 ilisG~tGSGKTT~l~all~~i~~~~~--~iitiEdp~E~~---~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgE 157 (264)
T cd01129 83 ILVTGPTGSGKTTTLYSALSELNTPEK--NIITVEDPVEYQ---IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGE 157 (264)
T ss_pred EEEECCCCCcHHHHHHHHHhhhCCCCC--eEEEECCCceec---CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEecc
Confidence 344444455667777777777765443 344444322111 11222111111 11222223357999999987
Q ss_pred CchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHh
Q 004092 224 LEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNY 259 (774)
Q Consensus 224 ~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~ 259 (774)
.........++.....+..++.|+|.+....-+.++
T Consensus 158 iR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~Rl 193 (264)
T cd01129 158 IRDAETAEIAVQAALTGHLVLSTLHTNDAPGAITRL 193 (264)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHHH
Confidence 765433333332234566799999986544333333
No 285
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.10 E-value=3.2e+02 Score=28.01 Aligned_cols=82 Identities=7% Similarity=0.029 Sum_probs=47.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|+++.++....-.......+.+.+.+.||++.+....... .... ..+.. +...++|.|++.....
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~-~~~~-------------~~~~~-~~~~~vdgiii~~~~~ 66 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVNLIVSIANQDL-NKQL-------------SDVED-FITKKVDAIVLSPVDS 66 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCEEEEecCCCCH-HHHH-------------HHHHH-HHHcCCCEEEEcCCCh
Confidence 5677777766666667778888899999999876543211 1010 11122 2345899998865432
Q ss_pred h---HHHHHHHhCCCCCCCEEEE
Q 004092 227 K---VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 227 ~---~~l~~Ll~~~~~~ipvI~t 246 (774)
. ..+..+ ...++|+|..
T Consensus 67 ~~~~~~~~~~---~~~~ipvV~~ 86 (267)
T cd06322 67 KGIRAAIAKA---KKAGIPVITV 86 (267)
T ss_pred hhhHHHHHHH---HHCCCCEEEE
Confidence 1 122222 2346888765
No 286
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=27.09 E-value=4.2e+02 Score=26.94 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=50.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.+|.++............+.+.+.+.||++.++........ . ......+...++|.|++.....
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiii~~~~~ 66 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGYQLLLGNTGYSPER-E--------------EELLRTLLSRRPAGLILTGLEH 66 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCCEEEEecCCCCchh-H--------------HHHHHHHHHcCCCEEEEeCCCC
Confidence 577888877667777778888999999999988664322111 0 0112233456799988866443
Q ss_pred h-HHHHHHHhCCCCCCCEEEE
Q 004092 227 K-VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 227 ~-~~l~~Ll~~~~~~ipvI~t 246 (774)
. ..+..+. ..++|+|..
T Consensus 67 ~~~~~~~~~---~~~ipvv~~ 84 (268)
T cd01575 67 TERTRQLLR---AAGIPVVEI 84 (268)
T ss_pred CHHHHHHHH---hcCCCEEEE
Confidence 2 2223222 346898865
No 287
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.05 E-value=2.8e+02 Score=28.51 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=46.7
Q ss_pred EEEEecCC-CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 147 LALVFPDL-LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 147 ialV~~~L-~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
|++|.+.+ ...-.......+...+.+.||++.++...... .... ..+.. +...++|.|++....
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~-------------~~~~~-l~~~~vdgiii~~~~ 66 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVEVIVLDANGDV-ARQA-------------AQVED-LIAQKVDGIILWPTD 66 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCcCH-HHHH-------------HHHHH-HHHcCCCEEEEecCC
Confidence 56777776 55555666777788888999999887543211 1110 11122 234579988776543
Q ss_pred hh---HHHHHHHhCCCCCCCEEEE
Q 004092 226 AK---VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 226 ~~---~~l~~Ll~~~~~~ipvI~t 246 (774)
.. ..+..+. ..++|+|..
T Consensus 67 ~~~~~~~l~~~~---~~~iPvV~~ 87 (275)
T cd06317 67 GQAYIPGLRKAK---QAGIPVVIT 87 (275)
T ss_pred ccccHHHHHHHH---HCCCcEEEe
Confidence 21 1222222 457898854
No 288
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=27.00 E-value=1.9e+02 Score=30.30 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR 186 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~ 186 (774)
.+.+++.|.++.. -.+.-+-..+..+.++|++|.++|...++
T Consensus 9 ~~~~vL~v~aHPD--De~~g~ggtla~~~~~G~~V~v~~lT~Ge 50 (237)
T COG2120 9 DPLRVLVVFAHPD--DEEIGCGGTLAKLAARGVEVTVVCLTLGE 50 (237)
T ss_pred cCCcEEEEecCCc--chhhccHHHHHHHHHCCCeEEEEEccCCc
Confidence 3577888888753 11111112234558899999999997755
No 289
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=26.96 E-value=2.9e+02 Score=28.44 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=47.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~-G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
+|.++++++...-....+..+.+.+.+. ||++.+++..... ....+. +.. +...++|.|++...
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~-------------i~~-~~~~~vdgiii~~~ 65 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNYPDVELIIADAADDN-SKQVAD-------------IEN-FIRQGVDLLIISPN 65 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCH-HHHHHH-------------HHH-HHHhCCCEEEEecC
Confidence 3677888766555566777778888886 9999877543211 111111 111 22457998888654
Q ss_pred chh---HHHHHHHhCCCCCCCEEEE
Q 004092 225 EAK---VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 225 ~~~---~~l~~Ll~~~~~~ipvI~t 246 (774)
... ..+..+. ..++|+|..
T Consensus 66 ~~~~~~~~~~~~~---~~~ipvV~~ 87 (270)
T cd06308 66 EAAPLTPVVEEAY---RAGIPVILL 87 (270)
T ss_pred chhhchHHHHHHH---HCCCCEEEe
Confidence 321 1222222 357898865
No 290
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=26.84 E-value=4.3e+02 Score=27.46 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=49.8
Q ss_pred eEEEEecC---CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 146 QLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 146 rialV~~~---L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+|+++++. +...-....+..+.+.+++.||++.++...+ + . .. ......+...++|.|++.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~i~~~~~-~-~-~~-------------~~~i~~l~~~~vdgiI~~ 64 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVESKS-D-A-DY-------------EPNLEQLADAGYDLIVGV 64 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEEEEecCC-H-H-HH-------------HHHHHHHHhCCCCEEEEc
Confidence 47788876 4555666777788899999999998875432 1 1 00 011223455789999987
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
+......+...+. ...++|+|..
T Consensus 65 ~~~~~~~~~~~~~-~~~~~PiV~i 87 (265)
T cd06354 65 GFLLADALKEVAK-QYPDQKFAII 87 (265)
T ss_pred CcchHHHHHHHHH-HCCCCEEEEE
Confidence 5442222222222 1236787764
No 291
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=26.70 E-value=2.5e+02 Score=27.53 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=32.6
Q ss_pred EEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
|..+.+...+.++++.||+++.-. -..+++|.+..|+|.|+-
T Consensus 65 id~y~f~psl~e~I~~AdlVIsHA------GaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDIRSADLVISHA------GAGSCLETLRLGKPLIVV 106 (170)
T ss_pred EEEEecCccHHHHHhhccEEEecC------CcchHHHHHHcCCCEEEE
Confidence 444445689999999999998432 356899999999998764
No 292
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.00 E-value=1.6e+02 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=32.1
Q ss_pred CeEEEEecCCCC-ChHHHHHHHHHHHHHHcCCeEEEEEcCCC
Q 004092 145 PQLALVFPDLLI-DPQQLQMVTIAIALREIGYAIQVYSLEDG 185 (774)
Q Consensus 145 ~rialV~~~L~~-GG~e~~v~~Lak~L~~~G~eV~V~t~~~~ 185 (774)
+||++|.++... |-....+..+++.+.+.|+++.++...+.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 578999999865 55556667778888888999999988764
No 293
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=25.96 E-value=5.2e+02 Score=26.17 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=49.4
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.++.+++..--....+..+.+++.+.||++.++.....+.. .. .. ...+...++|.|++.....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~-i~~l~~~~~dgii~~~~~~ 66 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQMLLMNTNFSIEK-EI-------------EA-LELLARQKVDGIILLATTI 66 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-HH-------------HH-HHHHHhcCCCEEEEeCCCC
Confidence 567777766555566777788889999999988765432211 00 01 1123346899988865432
Q ss_pred h-HHHHHHHhCCCCCCCEEEEEc
Q 004092 227 K-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
. ..+..+. ..++|+|+.-.
T Consensus 67 ~~~~~~~~~---~~~ipvv~~~~ 86 (259)
T cd01542 67 TDEHREAIK---KLNVPVVVVGQ 86 (259)
T ss_pred CHHHHHHHh---cCCCCEEEEec
Confidence 1 2222222 34689887643
No 294
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=25.78 E-value=74 Score=29.13 Aligned_cols=24 Identities=25% Similarity=0.761 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcce
Q 004092 51 LWICTVAVFLFFVVIFQLFLPGSV 74 (774)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~ 74 (774)
+|+-.+++|++++++..|.+|++.
T Consensus 5 ~Wv~~i~~~~il~t~~~~llP~~~ 28 (106)
T TIGR02896 5 EWVTNIIVLILLATILEMLLPNSS 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcc
Confidence 699999999999999999999664
No 295
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=25.37 E-value=4.5e+02 Score=26.88 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=49.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.++++++...-.......+.+.+.+.||++.+.+....+.. . ......+...++|.|++.....
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgiii~~~~~ 66 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGYQLLIACSDDDPET-E--------------RETVETLIARQVDALIVAGSLP 66 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHHcCCCEEEEcCCCC
Confidence 567777766555566667777888899999988875432211 0 0112234456899888776432
Q ss_pred hHH-HHHHHhCCCCCCCEEEEEc
Q 004092 227 KVV-ISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~~~-l~~Ll~~~~~~ipvI~tiH 248 (774)
... +..+ ...++|+|..-+
T Consensus 67 ~~~~~~~~---~~~~ipvV~~~~ 86 (264)
T cd06274 67 PDDPYYLC---QKAGLPVVALDR 86 (264)
T ss_pred chHHHHHH---HhcCCCEEEecC
Confidence 222 2222 235689877644
No 296
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=25.33 E-value=3.5e+02 Score=29.13 Aligned_cols=100 Identities=7% Similarity=0.128 Sum_probs=58.8
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcC--CeEEEEEcCCCcchhhhhhcCccEEEcccc--------hhHHHH
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIG--YAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKASF 210 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G--~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~--------~~l~~~ 210 (774)
+-+++|+++....- | .-+.++..+...-. .+|.++...........+..++|+..++.. ..+...
T Consensus 81 ~~~~~ki~vl~Sg~---g--~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~ 155 (280)
T TIGR00655 81 ADKLKRVAILVSKE---D--HCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQLEL 155 (280)
T ss_pred CCCCcEEEEEEcCC---C--hhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHH
Confidence 34577888766532 2 23455666655433 466655555555555677889998776542 123455
Q ss_pred hhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcC
Q 004092 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (774)
Q Consensus 211 i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg 249 (774)
++..++|+|++...... +-..++.. +. .-++.+|.
T Consensus 156 l~~~~~Dlivlagym~i-l~~~~l~~-~~--~~iINiHp 190 (280)
T TIGR00655 156 LKQYQVDLVVLAKYMQI-LSPDFVKR-YP--NKIINIHH 190 (280)
T ss_pred HHHhCCCEEEEeCchhh-CCHHHHhh-cc--CCEEEecC
Confidence 77789999998776552 22233332 21 13778885
No 297
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.19 E-value=4.7e+02 Score=26.76 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=49.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|+++++.+...-...++..+...+.+.||++.++.....+.. . ......+...++|.|++.....
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~~dgiii~~~~~ 66 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAGLRVILCNTDEDPEK-E--------------AMYLELMEEERVTGVIFAPTRA 66 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHhCCCCEEEEeCCCC
Confidence 677888876556666777888999999999987765432211 0 0112234456799888765432
Q ss_pred hHHHHHHHhCCCCCCCEEEEE
Q 004092 227 KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~ti 247 (774)
......+ ...++|+|..-
T Consensus 67 ~~~~~~~---~~~~iPvV~~~ 84 (263)
T cd06280 67 TLRRLAE---LRLSFPVVLID 84 (263)
T ss_pred CchHHHH---HhcCCCEEEEC
Confidence 2122222 23468987653
No 298
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=25.07 E-value=5.4e+02 Score=28.19 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=59.4
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|.++++++...-....+..+...+.+.||++.+......+.. .......+...++|.|++.
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~---------------e~~~~~~l~~~~vdGiIi~ 121 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLANTDDDPEK---------------EREYLETLLQKRVDGLILL 121 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEECCCCCHHH---------------HHHHHHHHHHcCCCEEEEe
Confidence 4466889999877766677888889999999999999876652211 1122345667889999988
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
..........++.. .++|+|..-.
T Consensus 122 ~~~~~~~~~~~l~~--~~~P~V~i~~ 145 (333)
T COG1609 122 GERPNDSLLELLAA--AGIPVVVIDR 145 (333)
T ss_pred cCCCCHHHHHHHHh--cCCCEEEEeC
Confidence 73332233333322 3689887665
No 299
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=24.53 E-value=2.1e+02 Score=29.72 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhh-hcCccEEEcccch-hHHHHhhhcCccEEEEcCCch-hHHHHHHH
Q 004092 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWR-NIGVPVAILQTGR-EKASFVNWLNYDGILVNSLEA-KVVISNIM 234 (774)
Q Consensus 158 G~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~-~~gi~i~~l~~~~-~l~~~i~~~~~DIIhvhs~~~-~~~l~~Ll 234 (774)
|+..+-..+|+.|.+.||+|.++-........... .....+....... ....-.--.++|++++-+... ...+.+.+
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~l 86 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNSVLALL 86 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHH
Confidence 44566778999999999999998866544333222 2333333222222 122222336899988877642 12344444
Q ss_pred hCCCCCCC-EEEEEcC
Q 004092 235 QEPFKSLP-LVWTIHE 249 (774)
Q Consensus 235 ~~~~~~ip-vI~tiHg 249 (774)
.....++| +|..+++
T Consensus 87 a~~~~gv~~viar~~~ 102 (225)
T COG0569 87 ALKEFGVPRVIARARN 102 (225)
T ss_pred HHHhcCCCcEEEEecC
Confidence 44344666 5556664
No 300
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=24.42 E-value=4e+02 Score=28.81 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=21.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR 186 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~ 186 (774)
++++|.++.. =.+..+--.+..+.+.|++|.|++...++
T Consensus 2 rvL~V~AHPD--DE~l~~GGtiA~~a~~G~~V~vV~~T~Ge 40 (283)
T TIGR03446 2 RLMAVHAHPD--DESSKGAATMARYAAEGHDVMVVTCTGGE 40 (283)
T ss_pred eEEEEEeCCC--cHHHhHHHHHHHHHHCCCeEEEEEecCCC
Confidence 5666666542 12222222233456678888888776654
No 301
>PRK14749 hypothetical protein; Provisional
Probab=24.40 E-value=1.2e+02 Score=21.24 Aligned_cols=21 Identities=19% Similarity=0.613 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004092 49 YLLWICTVAVFLFFVVIFQLF 69 (774)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~ 69 (774)
||.||+.+.+=+.+.|+-.|-
T Consensus 3 YfaWiLG~~lAc~f~ilna~w 23 (30)
T PRK14749 3 YLLWFVGILLMCSLSTLVLVW 23 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999887777777765553
No 302
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=24.32 E-value=1.8e+02 Score=31.10 Aligned_cols=35 Identities=14% Similarity=-0.001 Sum_probs=27.0
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcC
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg 249 (774)
-+.|+.|+.+....++++.+. +...++|++.|=||
T Consensus 171 P~advyHsvstGyAgl~g~~~-k~~~g~P~lLTEHG 205 (268)
T PF11997_consen 171 PKADVYHSVSTGYAGLLGALA-KYRYGRPFLLTEHG 205 (268)
T ss_pred CCCCEEecCCccHHHHHHHHH-HHHhCCCEEEecCC
Confidence 577999988876644555555 45789999999998
No 303
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.28 E-value=4.6e+02 Score=26.88 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=50.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.+|++.+...-.......+.+.+.+.||++.++.....+.. . ......+...++|.|++.....
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgiIi~~~~~ 66 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGYTVLLCNTYRGGVS-E--------------ADYVEDLLARGVRGVVFISSLH 66 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCCEEEEEeCCCChHH-H--------------HHHHHHHHHcCCCEEEEeCCCC
Confidence 678888877666777888899999999999977654332211 0 1112334456899888753211
Q ss_pred h-H-----HHHHHHhCCCCCCCEEEEEc
Q 004092 227 K-V-----VISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~-~-----~l~~Ll~~~~~~ipvI~tiH 248 (774)
. . .+..+. ..++|+|+.-.
T Consensus 67 ~~~~~~~~~i~~~~---~~~ipvV~i~~ 91 (273)
T cd06292 67 ADTHADHSHYERLA---ERGLPVVLVNG 91 (273)
T ss_pred CcccchhHHHHHHH---hCCCCEEEEcC
Confidence 0 0 122222 45689887543
No 304
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=24.18 E-value=2.3e+02 Score=31.18 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHcCCCCccEEEcc-CcccHHH----HHHHcCEEEEcCc-cCcCCccHHHHHHHHcCCCEEEcCCc
Q 004092 389 NYSVVIEAIAHNLHYPLGVVKHMA-AEGDVDS----VLNTADVVIYGSF-LEEQTFPEILVKALCFRKPIIAPDLS 458 (774)
Q Consensus 389 ~Y~~~L~~la~~lgL~~~~V~flG-~~~dl~~----~l~aaDI~V~PS~-~E~qGfp~~llEAMA~G~PVIatd~g 458 (774)
..-+.++..++..|++- |...- ...|++. +....|++..|.. ....++...+.+|...++|+|+++.+
T Consensus 175 ~l~eelk~~A~~~Gl~v--ve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~ 248 (322)
T COG2984 175 SLVEELKKEARKAGLEV--VEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQVANKAKIPLIASDTS 248 (322)
T ss_pred HHHHHHHHHHHHCCCEE--EEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHHHHHHhCCCeecCCHH
Confidence 34567778888888864 44333 3345443 4467899888862 22226788899999999999999865
No 305
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.14 E-value=4e+02 Score=27.39 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=50.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.+|++++...-.......+.+.+++.||++.+......+.. . ......+...++|.|++.....
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgii~~~~~~ 66 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPER-E--------------LEILRSFEQRRMDGIIIAPGDE 66 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHH-H--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 678888877666777778888999999999988764332210 0 0112234446899888764321
Q ss_pred h-HHHHHHHhCCCCCCCEEEEEc
Q 004092 227 K-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
. ..+...+. ..++|+|+.-.
T Consensus 67 ~~~~~~~~~~--~~~ipvV~i~~ 87 (269)
T cd06281 67 RDPELVDALA--SLDLPIVLLDR 87 (269)
T ss_pred CcHHHHHHHH--hCCCCEEEEec
Confidence 1 11222221 34689887644
No 306
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.06 E-value=2.5e+02 Score=28.68 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=48.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|++|.+.....-.......+-+.+.+.|+++.++...........+. +... -..++|.|++.....
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~-------------i~~~-i~~~~d~Iiv~~~~~ 66 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQ-------------IEQA-ISQGVDGIIVSPVDP 66 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHH-------------HHHH-HHTTESEEEEESSST
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHH-------------HHHH-HHhcCCEEEecCCCH
Confidence 56777777666555667777788889999999962222221211111 1222 345699999876554
Q ss_pred hHHHHHHHhCCCCCCCEEEE
Q 004092 227 KVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~t 246 (774)
......+-.....++|+|..
T Consensus 67 ~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 67 DSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp TTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhhcCceEEEE
Confidence 22222222122457888863
No 307
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=24.02 E-value=7e+02 Score=27.29 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCC
Q 004092 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDS 386 (774)
Q Consensus 330 l~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~ 386 (774)
.+...-++...| -+.+ -.-+.+.++...+....+. ...+.-.+++||+.
T Consensus 109 ~~~~~Nvl~t~g-a~~~----i~~~~l~~a~~~~~~~~~~---l~~p~~avLIGG~s 157 (311)
T PF06258_consen 109 LPRGPNVLPTLG-APNR----ITPERLAEAAAAWAPRLAA---LPRPRVAVLIGGDS 157 (311)
T ss_pred cCCCCceEeccc-CCCc----CCHHHHHHHHHhhhhhhcc---CCCCeEEEEECcCC
Confidence 434444777888 5555 4455566666555444322 22346788899754
No 308
>PHA00453 hypothetical protein
Probab=23.72 E-value=28 Score=25.45 Aligned_cols=10 Identities=70% Similarity=1.272 Sum_probs=6.6
Q ss_pred hhhccccccc
Q 004092 740 DRLHKNAWIG 749 (774)
Q Consensus 740 ~~~~~~~~~~ 749 (774)
||.||++|=|
T Consensus 32 DR~~KRaWE~ 41 (41)
T PHA00453 32 DRAHKRAWEG 41 (41)
T ss_pred hhHHhhcccC
Confidence 6777777643
No 309
>PRK09739 hypothetical protein; Provisional
Probab=23.67 E-value=4e+02 Score=26.70 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=31.7
Q ss_pred CCeEEEEecCCCCChHH-HHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 144 KPQLALVFPDLLIDPQQ-LQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 144 k~rialV~~~L~~GG~e-~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
.++|++|.++...++.. ..+..+++.+.+.|++|+++....
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 46899999988776644 455667788899999999987654
No 310
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=23.38 E-value=6.6e+02 Score=25.57 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=47.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|++++++....=.......+.+.+.+.||++.++....++. ... .....+...++|.|++.....
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~-~~~--------------~~i~~l~~~~vdgiii~~~~~ 66 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGYNLILCNTEGDPE-RQR--------------SYLRMLAQKRVDGLLVMCSEY 66 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEEeCCCChH-HHH--------------HHHHHHHHcCCCEEEEecCCC
Confidence 56777766544445556677788889999998765432211 010 111223446899888866443
Q ss_pred hHHH-HHHHhCCCCCCCEEEEEc
Q 004092 227 KVVI-SNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~~~l-~~Ll~~~~~~ipvI~tiH 248 (774)
.... ..+. ...++|+|..-.
T Consensus 67 ~~~~~~~l~--~~~~ipvV~i~~ 87 (269)
T cd06275 67 DQPLLAMLE--RYRHIPMVVMDW 87 (269)
T ss_pred ChHHHHHHH--hcCCCCEEEEec
Confidence 2222 2222 135789886544
No 311
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.33 E-value=3.4e+02 Score=27.97 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=50.5
Q ss_pred HHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCc
Q 004092 357 LRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEE 435 (774)
Q Consensus 357 LeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~ 435 (774)
+++++.+++++|+ . ++| |.-... +.. +.+.+.|-+ -+.-.+...++.+.-...++.++|....
T Consensus 54 ~~~I~~l~~~~p~--------~--~IGAGTVl~~--~~a-~~a~~aGA~--FivsP~~~~~vi~~a~~~~i~~iPG~~T- 117 (212)
T PRK05718 54 LEAIRLIAKEVPE--------A--LIGAGTVLNP--EQL-AQAIEAGAQ--FIVSPGLTPPLLKAAQEGPIPLIPGVST- 117 (212)
T ss_pred HHHHHHHHHHCCC--------C--EEEEeeccCH--HHH-HHHHHcCCC--EEECCCCCHHHHHHHHHcCCCEeCCCCC-
Confidence 6777777777776 2 345 432221 222 333334443 3555566678888888888888887543
Q ss_pred CCccHHHHHHHHcCCCEEE
Q 004092 436 QTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 436 qGfp~~llEAMA~G~PVIa 454 (774)
|.-+.+|+.+|..+|-
T Consensus 118 ---ptEi~~a~~~Ga~~vK 133 (212)
T PRK05718 118 ---PSELMLGMELGLRTFK 133 (212)
T ss_pred ---HHHHHHHHHCCCCEEE
Confidence 5568889999988765
No 312
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=23.23 E-value=4e+02 Score=24.19 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEc
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYG 430 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~P 430 (774)
-|.+.++++++.= . ++++|+-.+-.+...+.++.+++..+++- +.+ +..+++...+....+.+..
T Consensus 20 ~G~~~v~~aik~g-----k-------~~lVI~A~D~s~~~kkki~~~~~~~~vp~--~~~-~t~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 20 EGYNKCEEAIKKK-----K-------VYLIIISNDISENSKNKFKNYCNKYNIPY--IEG-YSKEELGNAIGRDEIKILG 84 (104)
T ss_pred ecHHHHHHHHHcC-----C-------ceEEEEeCCCCHhHHHHHHHHHHHcCCCE--EEe-cCHHHHHHHhCCCCeEEEE
Confidence 4555556666541 1 78999885555556678888888766653 444 6668888888876654444
Q ss_pred CccCcCCccHHHHHHH
Q 004092 431 SFLEEQTFPEILVKAL 446 (774)
Q Consensus 431 S~~E~qGfp~~llEAM 446 (774)
-.-+ ||.-.+++.+
T Consensus 85 i~d~--g~a~~l~~~~ 98 (104)
T PRK05583 85 VKDK--NMAKKLLKLW 98 (104)
T ss_pred EeCh--HHHHHHHHHH
Confidence 3333 7777777765
No 313
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=23.21 E-value=8.3e+02 Score=25.09 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHc
Q 004092 322 DTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNL 401 (774)
Q Consensus 322 ~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~l 401 (774)
+.+++++.......+++++|.-..-. .|+ =|+..|.....+ +.++.+|.+....++........--
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~GnNGG---DG~----VaAR~L~~~G~~-------V~v~~~~~~~~~~~~~a~~~~~~l~ 103 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGPGNNGG---DGL----VAARHLKAAGYA-------VTVLLLGDPKKLKTEAARANLKSLG 103 (203)
T ss_pred HHHHHHcCcccCCEEEEEECCCCccH---HHH----HHHHHHHhCCCc-------eEEEEeCCCCCccHHHHHHHHHhhc
Q ss_pred CCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccH-------HHHHHHH-cCCCEEEcCCcc
Q 004092 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPE-------ILVKALC-FRKPIIAPDLSN 459 (774)
Q Consensus 402 gL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~-------~llEAMA-~G~PVIatd~gg 459 (774)
.... +......+ ....+|++|=.-+-- |+.. .++|++- .++|||+-|++.
T Consensus 104 ~~~~--v~~~~~~~----~~~~~dvIVDalfG~--G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 104 IGGV--VKIKELED----EPESADVIVDALFGT--GLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred CCcc--eeeccccc----ccccCCEEEEeceec--CCCCCCccHHHHHHHHHHhcCCceEEEeCCC
No 314
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.21 E-value=9.3e+02 Score=25.70 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=63.5
Q ss_pred EEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe--CCC---------CCchHHHHHHHHHHcCCC
Q 004092 336 VIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDS---------TSNYSVVIEAIAHNLHYP 404 (774)
Q Consensus 336 vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG--G~~---------~e~Y~~~L~~la~~lgL~ 404 (774)
+++.+| .-.. .+.+.+++.++.|++.. ++++..| -|- .++-...+++..+++|++
T Consensus 28 ~~~iaG-PCsi----e~~~~~~~~A~~lk~~g---------~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~ 93 (266)
T PRK13398 28 KIIIAG-PCAV----ESEEQMVKVAEKLKELG---------VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLP 93 (266)
T ss_pred EEEEEe-CCcC----CCHHHHHHHHHHHHHcC---------CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCC
Confidence 566666 5555 67788889888888753 4566666 111 112234677788888887
Q ss_pred CccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHH-HHHcCCCEEEcC
Q 004092 405 LGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK-ALCFRKPIIAPD 456 (774)
Q Consensus 405 ~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llE-AMA~G~PVIatd 456 (774)
- -..+.. ..++..+...+|++-.+|..-. ...+++ +-..|+||+.++
T Consensus 94 ~-~te~~d-~~~~~~l~~~vd~~kIga~~~~---n~~LL~~~a~~gkPV~lk~ 141 (266)
T PRK13398 94 V-VTEVMD-TRDVEEVADYADMLQIGSRNMQ---NFELLKEVGKTKKPILLKR 141 (266)
T ss_pred E-EEeeCC-hhhHHHHHHhCCEEEECccccc---CHHHHHHHhcCCCcEEEeC
Confidence 5 333333 2455555556899999996542 333444 456789998764
No 315
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.10 E-value=2.8e+02 Score=35.83 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCeEEEEecCC-CCC-hHH--HHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcc-cchhHHHHhhhcCccE
Q 004092 144 KPQLALVFPDL-LID-PQQ--LQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQ-TGREKASFVNWLNYDG 218 (774)
Q Consensus 144 k~rialV~~~L-~~G-G~e--~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~-~~~~l~~~i~~~~~DI 218 (774)
+++++++-.+. .+| |.| -.+...++.|++.||++.++...+......+.... ..+..+ ....+..+++..++|.
T Consensus 555 ~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD-~~y~ep~~~e~vl~I~~~e~~dg 633 (1068)
T PRK12815 555 KKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTAD-RLYFEPLTLEDVLNVAEAENIKG 633 (1068)
T ss_pred CceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCc-eEEEccCCHHHHHHHHhhcCCCE
Confidence 45565554433 344 333 36778899999999999998876533211110111 111112 1234556677899999
Q ss_pred EEEcCC
Q 004092 219 ILVNSL 224 (774)
Q Consensus 219 Ihvhs~ 224 (774)
|++...
T Consensus 634 VI~~~g 639 (1068)
T PRK12815 634 VIVQFG 639 (1068)
T ss_pred EEEecC
Confidence 997543
No 316
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.09 E-value=5.4e+02 Score=26.26 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=50.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|++++|++...-....+..+.+.+.+.||++.++...... ... ......+...++|.|++.....
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~i~~l~~~~~dgiii~~~~~ 66 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAERGYSTFVANTGDNP-DAQ--------------RRAIEMLLDRRVDGLILGDARS 66 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCH-HHH--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 6788888766666777888899999999998765433211 111 0112234457799888765332
Q ss_pred h-HHHHHHHhCCCCCCCEEEEEc
Q 004092 227 K-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
. ..+..+. ..++|+|+.-+
T Consensus 67 ~~~~~~~~~---~~~iPvv~~~~ 86 (265)
T cd06285 67 DDHFLDELT---RRGVPFVLVLR 86 (265)
T ss_pred ChHHHHHHH---HcCCCEEEEcc
Confidence 1 2222222 34689876544
No 317
>PRK10494 hypothetical protein; Provisional
Probab=23.01 E-value=3.1e+02 Score=29.20 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=63.7
Q ss_pred HHHHHHHHHchhhcccCCCCCCCeEEEEEeCCC-C--CchHHHHHHHHHHcCCCCccEEEccCc----cc---HHHHHHH
Q 004092 354 ALILRALLPLFSEVSVENESNSPIKVMILSGDS-T--SNYSVVIEAIAHNLHYPLGVVKHMAAE----GD---VDSVLNT 423 (774)
Q Consensus 354 ~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~-~--e~Y~~~L~~la~~lgL~~~~V~flG~~----~d---l~~~l~a 423 (774)
+.+.+|+...+ +++. .++++.||.. . ..-.+..++.+.++|++...|...+.. ++ ..+++..
T Consensus 107 ~Rl~~a~~L~r-~~~~-------~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~ 178 (259)
T PRK10494 107 PRLTEGIRLWR-ANPG-------AKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGD 178 (259)
T ss_pred HHHHHHHHHHH-hCCC-------CEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCC
Confidence 45666665544 5566 7899999421 1 223355677888899998667665522 22 3345555
Q ss_pred cCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc
Q 004092 424 ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (774)
Q Consensus 424 aDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g 458 (774)
..+++..|-+- ++.+...+=..|..||..+++
T Consensus 179 ~~iiLVTsa~H---m~RA~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 179 APFLLVTSASH---LPRAMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred CCEEEECCHHH---HHHHHHHHHHcCCceeecCCc
Confidence 56888888665 789999999999999987664
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.99 E-value=3.4e+02 Score=31.24 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
.+|.+.++++ ....|=.+.+..||..|.+.|+.|.+++...
T Consensus 93 ~~p~vI~lvG-~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVG-LQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEEC-CCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 4577777775 3445667788899999999999999988654
No 319
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.96 E-value=5.8e+02 Score=25.93 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=48.1
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.++++.+...-.......+.+.+.+.||++.++.....+.. .......+...++|.|++.....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~l~~~~vdgiIi~~~~~ 66 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGYSTIIGNSDENPET---------------ENRYLDNLLSQRVDGIIVVPHEQ 66 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH---------------HHHHHHHHHhcCCCEEEEcCCCC
Confidence 567777655444455666778888999999988864322110 01112234467899888865432
Q ss_pred h-HHHHHHHhCCCCCCCEEEEE
Q 004092 227 K-VVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 227 ~-~~l~~Ll~~~~~~ipvI~ti 247 (774)
. ..+..+. ..++|+|+.-
T Consensus 67 ~~~~~~~l~---~~~ipvV~~~ 85 (265)
T cd06299 67 SAEQLEDLL---KRGIPVVFVD 85 (265)
T ss_pred ChHHHHHHH---hCCCCEEEEe
Confidence 1 1222222 3568988653
No 320
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.96 E-value=1.8e+02 Score=28.98 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=48.9
Q ss_pred cHHHHHHHcCEEEEc----CccCcCCccHHHHHHHHcCCCEEEcC-----CcccccccccCccEEE-EcCCCHHHHHHHH
Q 004092 416 DVDSVLNTADVVIYG----SFLEEQTFPEILVKALCFRKPIIAPD-----LSNIRKYVDDRVNGYL-FPKENIKALTHII 485 (774)
Q Consensus 416 dl~~~l~aaDI~V~P----S~~E~qGfp~~llEAMA~G~PVIatd-----~ggi~EiV~dg~~G~L-v~~~d~e~La~aI 485 (774)
.+...+..||+.+.- --.-.+.|--.+-|+|-+++|+|+|= .+...++-.-+. -++ +++.|-+.+.+.|
T Consensus 93 al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~-v~v~lt~~NR~~i~~~I 171 (179)
T COG1618 93 ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGG-VYVFLTPENRNRILNEI 171 (179)
T ss_pred HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCC-EEEEEccchhhHHHHHH
Confidence 456677789999863 21111257778889999999999962 223333333222 333 6788888888888
Q ss_pred HHHHHc
Q 004092 486 LQVITN 491 (774)
Q Consensus 486 ~~Ll~d 491 (774)
..+|..
T Consensus 172 l~~L~~ 177 (179)
T COG1618 172 LSVLKG 177 (179)
T ss_pred HHHhcc
Confidence 877765
No 321
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.96 E-value=2.8e+02 Score=29.94 Aligned_cols=100 Identities=8% Similarity=0.146 Sum_probs=60.0
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHH--cCCeEEEEEcCCCcchhhhhhcCccEEEcccc--------hhHHHH
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALRE--IGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKASF 210 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~--~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~--------~~l~~~ 210 (774)
..+|+|+++...+- |. -+..|.++... .+++|.++.....+.....+..|+++..++.. ..+...
T Consensus 86 ~~~~~ri~vl~Sg~---gs--nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T PRK06027 86 SAERKRVVILVSKE---DH--CLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLLEL 160 (286)
T ss_pred cccCcEEEEEEcCC---CC--CHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCccccchhHHHHHHH
Confidence 56788888776643 22 24455555554 35677776666555555677889997764322 123555
Q ss_pred hhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcC
Q 004092 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (774)
Q Consensus 211 i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg 249 (774)
++..++|+|++-..... +-..++.. +. .-++.+|.
T Consensus 161 l~~~~~Dlivlagy~~i-l~~~~l~~-~~--~~iiNiHp 195 (286)
T PRK06027 161 IDEYQPDLVVLARYMQI-LSPDFVAR-FP--GRIINIHH 195 (286)
T ss_pred HHHhCCCEEEEecchhh-cCHHHHhh-cc--CCceecCc
Confidence 77789999998776541 22233322 21 23678895
No 322
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=22.84 E-value=3.4e+02 Score=27.41 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=48.3
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc------chhhhhhcCccEEEcccchh----HHHH---h
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR------AHEVWRNIGVPVAILQTGRE----KASF---V 211 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~------~~~~~~~~gi~i~~l~~~~~----l~~~---i 211 (774)
|++.++++.-+. |=.+.+..||..+...|..|-+++..... .....+..++++........ .... .
T Consensus 1 p~vi~lvGptGv-GKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGV-GKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTS-SHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCC-chHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 455555554333 55667788888888889999999976522 33445677888776553321 1122 2
Q ss_pred hhcCccEEEEcCCc
Q 004092 212 NWLNYDGILVNSLE 225 (774)
Q Consensus 212 ~~~~~DIIhvhs~~ 225 (774)
+..++|+|++.++.
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 34679999988763
No 323
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.79 E-value=2.4e+02 Score=30.23 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=29.8
Q ss_pred CCCCeEEEEecCCCCC-hH-HHHHHHHHHHHHHcCCeEEEEEcC
Q 004092 142 YRKPQLALVFPDLLID-PQ-QLQMVTIAIALREIGYAIQVYSLE 183 (774)
Q Consensus 142 ~rk~rialV~~~L~~G-G~-e~~v~~Lak~L~~~G~eV~V~t~~ 183 (774)
+|+.+|+++.++...- .. -.....+.++|.+.||+|.++...
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 5678899888654432 11 124478999999999999988643
No 324
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=22.71 E-value=3.2e+02 Score=29.14 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=44.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
+.++.+..... +..++++++++... ...++.+++..+|+++..+... ...-...+++..|++|++..
T Consensus 32 ~el~aV~dr~~----~~a~~~a~~~g~~~-------~~~~~eell~~~D~Vvi~tp~~--~h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 32 LTLSAVAVRDP----QRHADFIWGLRRPP-------PVVPLDQLATHADIVVEAAPAS--VLRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred eEEEEEECCCH----HHHHHHHHhcCCCc-------ccCCHHHHhcCCCEEEECCCcH--HHHHHHHHHHHcCCcEEEec
Confidence 67765554333 44556666555322 1246667778899999887554 34556678899999998754
Q ss_pred Cc
Q 004092 457 LS 458 (774)
Q Consensus 457 ~g 458 (774)
.+
T Consensus 99 ~g 100 (271)
T PRK13302 99 VG 100 (271)
T ss_pred ch
Confidence 33
No 325
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=22.65 E-value=5.6e+02 Score=26.22 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=50.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.++++++...-....+..+.+.+.+.||++.++....+... . ......+...++|.|++.....
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~i~~~~~~~vdgii~~~~~~ 66 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHLIITAGHHSAEK-E--------------REAIEFLLERRCDALILHSKAL 66 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEEEEEeCCCchHH-H--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 678888877666666777788889999999988764332110 0 0112223356899988865432
Q ss_pred hHH-HHHHHhCCCCCCCEEEEEc
Q 004092 227 KVV-ISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 ~~~-l~~Ll~~~~~~ipvI~tiH 248 (774)
... +..+. ..++|+|..-.
T Consensus 67 ~~~~~~~~~---~~~ipvV~~~~ 86 (268)
T cd06270 67 SDDELIELA---AQVPPLVLINR 86 (268)
T ss_pred CHHHHHHHh---hCCCCEEEEec
Confidence 222 22222 35689877544
No 326
>PRK06849 hypothetical protein; Provisional
Probab=22.54 E-value=3.6e+02 Score=30.16 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEccc--------chhHHHHhhhcCccEEEEcCCch
Q 004092 162 QMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT--------GREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 162 ~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~--------~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
..+.+++.|.+.||+|.++............... ....++. ...+..+++..++|+|+..+...
T Consensus 16 ~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d-~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~~e~~ 87 (389)
T PRK06849 16 AALELARLFHNAGHTVILADSLKYPLSRFSRAVD-GFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCEEV 87 (389)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhh-heEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEECChHH
Confidence 5788999999999999998776433211111111 1222211 13345567778999999877644
No 327
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=22.53 E-value=75 Score=28.87 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=26.3
Q ss_pred HHHHHHcCEEEEcCcc--CcCCccHHHHHHHHcCCCEEEcC
Q 004092 418 DSVLNTADVVIYGSFL--EEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 418 ~~~l~aaDI~V~PS~~--E~qGfp~~llEAMA~G~PVIatd 456 (774)
...+..||++|..-.. ...|...=+--|.+.|+|||+-.
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~ 96 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLT 96 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 3678999998875432 21245555556899999998843
No 328
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=22.47 E-value=97 Score=34.18 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=35.2
Q ss_pred CCCeEEEEecCCCCChHHH--HHHHHHHHHHHcCCeEEEEEcCCC
Q 004092 143 RKPQLALVFPDLLIDPQQL--QMVTIAIALREIGYAIQVYSLEDG 185 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~--~v~~Lak~L~~~G~eV~V~t~~~~ 185 (774)
+.+.=.+.++++..||..+ ++..|++.|.++|+.+-|++.+.+
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 3444588899999987754 788899999999999999997654
No 329
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.42 E-value=5.9e+02 Score=25.92 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=47.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|++++|+....-.......+.+.+.+.||++.++.....+.. .. ..+.. +...++|.|++.....
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~~~~-l~~~~vdgiii~~~~~ 66 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGYTLLVASSGYDLDR-EY-------------AQARK-LLERGVDGLALIGLDH 66 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEecCCCCHHH-HH-------------HHHHH-HHhcCCCEEEEeCCCC
Confidence 677888776555667778889999999999988653322111 00 11122 3344789888754332
Q ss_pred hHHHHHHHhCCCCCCCEEEE
Q 004092 227 KVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 227 ~~~l~~Ll~~~~~~ipvI~t 246 (774)
.......+. ..++|+|..
T Consensus 67 ~~~~~~~l~--~~~iPvv~~ 84 (268)
T cd06273 67 SPALLDLLA--RRGVPYVAT 84 (268)
T ss_pred CHHHHHHHH--hCCCCEEEE
Confidence 112222221 356898864
No 330
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=22.34 E-value=1.2e+02 Score=33.77 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=34.0
Q ss_pred CeEEEEecCCCCChHHH--HHHHHHHHHHHcCCeEEEEEcCCC
Q 004092 145 PQLALVFPDLLIDPQQL--QMVTIAIALREIGYAIQVYSLEDG 185 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~--~v~~Lak~L~~~G~eV~V~t~~~~ 185 (774)
+.=.++++++..||+.+ ++..|++.|.++|+.+-|++.+.+
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 97 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG 97 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 44467899999987764 688899999999999999997654
No 331
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=22.22 E-value=4.4e+02 Score=26.60 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=48.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~ 225 (774)
+|.+|.+.............+...+.+.||++.++.....+.. .. ..+..++.+ ++|.|++....
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~-~~-------------~~~~~l~~~-~vdgvi~~~~~ 65 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVELIVLDAQNDVSK-QI-------------QQIEDLIAQ-GVDGIIISPVD 65 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCceEEEECCCCCHHH-HH-------------HHHHHHHHc-CCCEEEEeCCC
Confidence 4778888765455556667777888889999988776432211 00 111223333 89988876543
Q ss_pred hhH---HHHHHHhCCCCCCCEEEEEc
Q 004092 226 AKV---VISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 226 ~~~---~l~~Ll~~~~~~ipvI~tiH 248 (774)
... .+..+. ..++|+|..-.
T Consensus 66 ~~~~~~~~~~l~---~~~ip~V~~~~ 88 (267)
T cd01536 66 SAALTPALKKAN---AAGIPVVTVDS 88 (267)
T ss_pred chhHHHHHHHHH---HCCCcEEEecC
Confidence 211 122222 34688887544
No 332
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=22.18 E-value=7.8e+02 Score=26.19 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=51.4
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|.++++++...-....+..+.+.+.+.||++.++.....+.. . ......+...++|.|++.
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~-~--------------~~~~~~l~~~~vdgiIi~ 123 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSDDNPDQ-E--------------KVVIENLLARQVDALIVA 123 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHHcCCCEEEEe
Confidence 4567899998776555566677788888999999988765332111 0 011222344678988775
Q ss_pred CCc--hhHHHHHHHhCCCCCCCEEEEE
Q 004092 223 SLE--AKVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 223 s~~--~~~~l~~Ll~~~~~~ipvI~ti 247 (774)
... ....+..+. ..++|+|+.-
T Consensus 124 ~~~~~~~~~~~~l~---~~~iPvV~~~ 147 (327)
T TIGR02417 124 SCMPPEDAYYQKLQ---NEGLPVVALD 147 (327)
T ss_pred CCCCCChHHHHHHH---hcCCCEEEEc
Confidence 432 212333332 3468988643
No 333
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=22.02 E-value=4.9e+02 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=32.2
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
+++.+..+++ .+..|=.+.+..||..+...|+.|.+++...
T Consensus 112 ~~~~vi~lvG-pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVG-VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 4567776666 4456788899999999999999999988643
No 334
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.97 E-value=5.1e+02 Score=27.35 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=59.5
Q ss_pred cHHHHHHHcCEEEEcCc-cCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHH--cC
Q 004092 416 DVDSVLNTADVVIYGSF-LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVIT--NG 492 (774)
Q Consensus 416 dl~~~l~aaDI~V~PS~-~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~--d~ 492 (774)
.-..-++.||++|.-.. .| ++=-.+++.+ .+.+|+....++..+--...- -+..+|.+...++++|.+.|. |
T Consensus 45 ~d~~~l~~ADliv~~G~~lE--~~~~k~~~~~-~~~~v~~~~~~~~~~~~~~dP-H~Wldp~n~~~~a~~I~~~L~~~d- 119 (264)
T cd01020 45 TDAAKVSTADIVVYNGGGYD--PWMTKLLADT-KDVIVIAADLDGHDDKEGDNP-HLWYDPETMSKVANALADALVKAD- 119 (264)
T ss_pred HHHHHHhhCCEEEEeCCCch--HHHHHHHHhc-CCceEEeeecccccCCCCCCC-ceecCHhHHHHHHHHHHHHHHHhC-
Confidence 34456788999887652 33 3444555544 355666654433211101112 245666788889999988886 6
Q ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004092 493 KISPFARNIASIGRRSVKNLMALETIEGYAMLLEN 527 (774)
Q Consensus 493 ~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ 527 (774)
|+......+|+.++.++ .....+.+.+.+..
T Consensus 120 --P~~~~~y~~N~~~~~~~--l~~l~~~~~~~~~~ 150 (264)
T cd01020 120 --PDNKKYYQANAKKFVAS--LKPLAAKIAELSAK 150 (264)
T ss_pred --cccHHHHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 77776777777776654 33344444444443
No 335
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.92 E-value=4e+02 Score=30.64 Aligned_cols=81 Identities=10% Similarity=0.173 Sum_probs=45.7
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHH-HHcCCeEEEEEcCCCc------chhhhhhcCccEEEcccchhHHHHhhhcC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIAL-REIGYAIQVYSLEDGR------AHEVWRNIGVPVAILQTGREKASFVNWLN 215 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L-~~~G~eV~V~t~~~~~------~~~~~~~~gi~i~~l~~~~~l~~~i~~~~ 215 (774)
.++++.++++. ...|=.+.+..||..+ ...|+.|.+++..... .....+..++++........+...+...+
T Consensus 221 ~~~~vi~lvGp-tGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~ 299 (432)
T PRK12724 221 NQRKVVFFVGP-TGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDG 299 (432)
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCC
Confidence 34566666653 3345666777787654 6789999999875411 11122445555543322223333344457
Q ss_pred ccEEEEcCC
Q 004092 216 YDGILVNSL 224 (774)
Q Consensus 216 ~DIIhvhs~ 224 (774)
+|+|++.++
T Consensus 300 ~D~VLIDTa 308 (432)
T PRK12724 300 SELILIDTA 308 (432)
T ss_pred CCEEEEeCC
Confidence 787777763
No 336
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=21.76 E-value=5.7e+02 Score=27.26 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=49.9
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiIi~ 124 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSDDQPDN-E--------------MRCAEHLLQRQVDALIVS 124 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH-H--------------HHHHHHHHHcCCCEEEEc
Confidence 3467888988765545555666777888899999988764322111 0 011222334579998875
Q ss_pred CCc--hhHHHHHHHhCCCCCCCEEEE
Q 004092 223 SLE--AKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~--~~~~l~~Ll~~~~~~ipvI~t 246 (774)
... ....+..+. ..++|+|+.
T Consensus 125 ~~~~~~~~~~~~l~---~~~iPvV~v 147 (328)
T PRK11303 125 TSLPPEHPFYQRLQ---NDGLPIIAL 147 (328)
T ss_pred CCCCCChHHHHHHH---hcCCCEEEE
Confidence 432 212222222 346898764
No 337
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.70 E-value=47 Score=31.33 Aligned_cols=6 Identities=17% Similarity=0.717 Sum_probs=2.4
Q ss_pred HHHHHH
Q 004092 52 WICTVA 57 (774)
Q Consensus 52 ~~~~~~ 57 (774)
|+++++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 444433
No 338
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=21.63 E-value=3.8e+02 Score=29.83 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=66.8
Q ss_pred EEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc
Q 004092 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE 414 (774)
Q Consensus 335 ~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~ 414 (774)
..++.+|..+ . +.+ ++|+..+.. + ++++-+..... +.-+++++++|.+- .
T Consensus 4 ~rVgViG~~~--G---~~h---~~al~~~~~---~-------~eLvaV~d~~~----erA~~~A~~~gi~~--------y 53 (343)
T TIGR01761 4 QSVVVCGTRF--G---QFY---LAAFAAAPE---R-------FELAGILAQGS----ERSRALAHRLGVPL--------Y 53 (343)
T ss_pred cEEEEEeHHH--H---HHH---HHHHHhCCC---C-------cEEEEEEcCCH----HHHHHHHHHhCCCc--------c
Confidence 4677888422 2 333 677765431 2 66655554433 56678888776532 2
Q ss_pred ccHHHHHHHcCE--EEEcCccCcCCc-cHHHHHHHHcCCCEEEcC-Cc--ccccccc-cCccEEEEcCCCHHHHHHHHHH
Q 004092 415 GDVDSVLNTADV--VIYGSFLEEQTF-PEILVKALCFRKPIIAPD-LS--NIRKYVD-DRVNGYLFPKENIKALTHIILQ 487 (774)
Q Consensus 415 ~dl~~~l~aaDI--~V~PS~~E~qGf-p~~llEAMA~G~PVIatd-~g--gi~EiV~-dg~~G~Lv~~~d~e~La~aI~~ 487 (774)
.++.+++...|+ ++.|+.... +. .-...+|+..|+.|++=. .. ...+++. -.++|..+-...-.....++.+
T Consensus 54 ~~~eell~d~Di~~V~ipt~~P~-~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~~f~p~~~~vr~ 132 (343)
T TIGR01761 54 CEVEELPDDIDIACVVVRSAIVG-GQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVNTFYPHLPAVRR 132 (343)
T ss_pred CCHHHHhcCCCEEEEEeCCCCCC-ccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEEecCHHHHHHHH
Confidence 466666665554 445542111 11 235678999999999832 21 2223331 0112322222233445677777
Q ss_pred HHHc
Q 004092 488 VITN 491 (774)
Q Consensus 488 Ll~d 491 (774)
++++
T Consensus 133 ~i~~ 136 (343)
T TIGR01761 133 FIEY 136 (343)
T ss_pred HHHc
Confidence 7877
No 339
>PHA02518 ParA-like protein; Provisional
Probab=21.54 E-value=4.9e+02 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHHcCCeEEEEEcCCCc
Q 004092 157 DPQQLQMVTIAIALREIGYAIQVYSLEDGR 186 (774)
Q Consensus 157 GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~ 186 (774)
-|-.+...+||.+|+++|+.|.++......
T Consensus 12 vGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 12 AGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 366778899999999999999999876533
No 340
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=21.51 E-value=4.9e+02 Score=26.42 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=47.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
++++.+.+...........+.+.+++.||++.++.....+.. . ......+...++|.|++.....
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiii~~~~~ 66 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYSLLLATTDYDAER-E--------------ADAVETLLRQRVDGLILTVADA 66 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCEEEEeeCCCCHHH-H--------------HHHHHHHHhcCCCEEEEecCCC
Confidence 567787766555566777888888999999998765321110 0 0112223346899988764322
Q ss_pred --hHHHHHHHhCCCCCCCEEEE
Q 004092 227 --KVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 227 --~~~l~~Ll~~~~~~ipvI~t 246 (774)
...+.. + ...++|+|..
T Consensus 67 ~~~~~~~~-~--~~~~ipvV~~ 85 (266)
T cd06282 67 ATSPALDL-L--DAERVPYVLA 85 (266)
T ss_pred CchHHHHH-H--hhCCCCEEEE
Confidence 112222 2 2356897754
No 341
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=21.36 E-value=2e+02 Score=30.13 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=39.9
Q ss_pred eEEEEEeCCC-CCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCC
Q 004092 377 IKVMILSGDS-TSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (774)
Q Consensus 377 v~LvIvGG~~-~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~P 451 (774)
.-.+++||.. ...+.+.+..+.+..+++ .|.|.|..+.+. ..+|.+++||.... .-|.=++.+-..+.|
T Consensus 33 tDai~VGGS~~~~~~d~vv~~ik~~~~lP--vilfPg~~~~vs---~~aDail~~svlNs-~n~~~iig~~~~aa~ 102 (230)
T PF01884_consen 33 TDAIIVGGSDTGVTLDNVVALIKRVTDLP--VILFPGSPSQVS---PGADAILFPSVLNS-RNPYWIIGAQVEAAP 102 (230)
T ss_dssp -SEEEEE-STHCHHHHHHHHHHHHHSSS---EEEETSTCCG-----TTSSEEEEEEETTB-SSTTTTTHHHHHHHH
T ss_pred CCEEEECCCCCccchHHHHHHHHhcCCCC--EEEeCCChhhcC---cCCCEEEEEEEecC-CCcchHhhHHHHHHH
Confidence 5678899776 444445555555556666 499998777664 56999999996542 233333344433334
No 342
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=21.11 E-value=6.5e+02 Score=25.54 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=47.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCc-
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE- 225 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~- 225 (774)
+.++++++...-.......+.+.+.+.||++.++....++.. ..+ .+.. +...++|.|++....
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~-------------~i~~-l~~~~vdgiii~~~~~ 66 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKYNIILSNSDNDKEK-ELK-------------VLNN-LLAKQVDGIIFMGGKI 66 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHH-HHH-------------HHHH-HHHhcCCEEEEeCCCC
Confidence 567788766555555666777888899999988864322211 100 1122 234679988875432
Q ss_pred hhHHHHHHHhCCCCCCCEEEEEc
Q 004092 226 AKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 226 ~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
....+..+. ..++|+|..-+
T Consensus 67 ~~~~~~~l~---~~~ipvV~~~~ 86 (268)
T cd06298 67 SEEHREEFK---RSPTPVVLAGS 86 (268)
T ss_pred cHHHHHHHh---cCCCCEEEEcc
Confidence 212222222 34689876543
No 343
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.10 E-value=3.9e+02 Score=30.60 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=47.2
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc------chhhhhhcCccEEEcccchhHHHHhhh----c
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR------AHEVWRNIGVPVAILQTGREKASFVNW----L 214 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~------~~~~~~~~gi~i~~l~~~~~l~~~i~~----~ 214 (774)
+++..+++. ...|=.+.+..||..|...|+.|-+++..... .....+..++++........+...+.. .
T Consensus 241 ~~vI~LVGp-tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 241 VQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CcEEEEECC-CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 455555554 44577788888999999999999998875422 111223455565544333333333322 2
Q ss_pred CccEEEEcCCc
Q 004092 215 NYDGILVNSLE 225 (774)
Q Consensus 215 ~~DIIhvhs~~ 225 (774)
++|+|++.++.
T Consensus 320 ~~DvVLIDTaG 330 (436)
T PRK11889 320 RVDYILIDTAG 330 (436)
T ss_pred CCCEEEEeCcc
Confidence 57877776653
No 344
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.90 E-value=3e+02 Score=28.02 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=51.5
Q ss_pred HHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCc
Q 004092 357 LRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEE 435 (774)
Q Consensus 357 LeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~ 435 (774)
+++++.+.+++|+ +++| |.-.+. ++.+ .+.+.|-+ -+.-.+..+++.++-...++.++|--.
T Consensus 47 ~~~I~~l~~~~p~----------~~vGAGTV~~~--e~a~-~a~~aGA~--FivSP~~~~~v~~~~~~~~i~~iPG~~-- 109 (196)
T PF01081_consen 47 LEAIEALRKEFPD----------LLVGAGTVLTA--EQAE-AAIAAGAQ--FIVSPGFDPEVIEYAREYGIPYIPGVM-- 109 (196)
T ss_dssp HHHHHHHHHHHTT----------SEEEEES--SH--HHHH-HHHHHT-S--EEEESS--HHHHHHHHHHTSEEEEEES--
T ss_pred HHHHHHHHHHCCC----------CeeEEEeccCH--HHHH-HHHHcCCC--EEECCCCCHHHHHHHHHcCCcccCCcC--
Confidence 6777888888877 2467 533221 3333 33334554 355556779999999999999999744
Q ss_pred CCccHHHHHHHHcCCCEEE
Q 004092 436 QTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 436 qGfp~~llEAMA~G~PVIa 454 (774)
.|.=+..|+.+|..+|=
T Consensus 110 --TptEi~~A~~~G~~~vK 126 (196)
T PF01081_consen 110 --TPTEIMQALEAGADIVK 126 (196)
T ss_dssp --SHHHHHHHHHTT-SEEE
T ss_pred --CHHHHHHHHHCCCCEEE
Confidence 48889999999998874
No 345
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=20.84 E-value=1.9e+02 Score=29.03 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
..+|++.|...-.--|-.....+||..|++.|+.|.++-...
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 346766666666666888899999999999999999887643
No 346
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.80 E-value=1.1e+03 Score=26.31 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=67.8
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccC--cccHHHHHHHcCEEE
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA--EGDVDSVLNTADVVI 428 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~--~~dl~~~l~aaDI~V 428 (774)
.|.+.+++|+......... .....+-.+.|+|+.........++++.+.+|+.- +..+.+. .+++.. +..|.+-|
T Consensus 136 ~G~~~a~~al~~~l~~~~~-~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~-~~~~~~~~~~~~i~~-~~~A~~ni 212 (406)
T cd01967 136 LGHHIANDAILDHLVGTKE-PEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRV-NATFTGDGTVDELRR-AHRAKLNL 212 (406)
T ss_pred HHHHHHHHHHHHHhcCCCC-cCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEE-EEEeCCCCCHHHHhh-CccCCEEE
Confidence 6788788887654322110 00112347888883211223477899999999987 6667753 266665 55555555
Q ss_pred EcCccCcCCccHHHHHHHH--cCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 429 YGSFLEEQTFPEILVKALC--FRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 429 ~PS~~E~qGfp~~llEAMA--~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
..+.. ++..+.+.|. +|+|.+.... +...+.+++.+.|.+++..
T Consensus 213 v~~~~----~~~~~a~~L~~r~GiP~~~~~p---------------~G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 213 VHCSR----SMNYLAREMEERYGIPYMEVNF---------------YGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred EEChH----HHHHHHHHHHHhhCCCEEEecC---------------CcHHHHHHHHHHHHHHhCC
Confidence 43321 2444455553 7999875321 1123567777777777655
No 347
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.65 E-value=7.6e+02 Score=25.18 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=48.5
Q ss_pred EEEEecC---CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 147 LALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 147 ialV~~~---L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
|.+++|+ +...-.......+.+.+.+.||++.+....... ... ......+...++|.|++..
T Consensus 2 vgv~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~-~~~--------------~~~~~~l~~~~vdgiii~~ 66 (268)
T cd06277 2 IGLIASKRILNSPAFYSEIYRAIEEEAKKYGYNLILKFVSDED-EEE--------------FELPSFLEDGKVDGIILLG 66 (268)
T ss_pred eEEEEeccccccCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCh-HHH--------------HHHHHHHHHCCCCEEEEeC
Confidence 5667776 344445556667888888999999887654321 100 0112234456899999876
Q ss_pred CchhHHHHHHHhCCCCCCCEEEEE
Q 004092 224 LEAKVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 224 ~~~~~~l~~Ll~~~~~~ipvI~ti 247 (774)
......+..+. ..++|+|..-
T Consensus 67 ~~~~~~~~~l~---~~~ipvV~~~ 87 (268)
T cd06277 67 GISTEYIKEIK---ELGIPFVLVD 87 (268)
T ss_pred CCChHHHHHHh---hcCCCEEEEc
Confidence 54432322222 3468988653
No 348
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=20.61 E-value=1.5e+02 Score=21.54 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc
Q 004092 50 LLWICTVAVFLFFVVIFQLFLPG 72 (774)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~ 72 (774)
|.+..+.+|.||+...+.-|+++
T Consensus 4 LK~~Vy~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 4 LKIFVYTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeehhhHHHHHHHHhccccCC
Confidence 34556667777666555556653
No 349
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.52 E-value=9.6e+02 Score=27.36 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe--CCCC--CchHHHHHHHHHHcCCCCccEEEccC--c-----ccHHH
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILS--GDST--SNYSVVIEAIAHNLHYPLGVVKHMAA--E-----GDVDS 419 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG--G~~~--e~Y~~~L~~la~~lgL~~~~V~flG~--~-----~dl~~ 419 (774)
+-...+.+.+.+.+++. +.++|+- |... ...-+++.+..+..+ ++ .|.|.=. + ++...
T Consensus 167 dpv~ia~egv~~fKke~---------fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd-~vi~VmDasiGQaae~Qa~a 235 (483)
T KOG0780|consen 167 DPVKIASEGVDRFKKEN---------FDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PD-EIIFVMDASIGQAAEAQARA 235 (483)
T ss_pred chHHHHHHHHHHHHhcC---------CcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CC-eEEEEEeccccHhHHHHHHH
Confidence 77778888888888764 7788887 6443 334556666777555 33 5666532 1 33444
Q ss_pred HHHHcCE--EEEcC---ccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCc-------cEEEEcCCCHHHHHHHHHH
Q 004092 420 VLNTADV--VIYGS---FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRV-------NGYLFPKENIKALTHIILQ 487 (774)
Q Consensus 420 ~l~aaDI--~V~PS---~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~-------~G~Lv~~~d~e~La~aI~~ 487 (774)
+=...|+ +|+.- ..- -|.++.---|.++|||---.| |.++|-+ .+-+.--+|.+.|.+.+..
T Consensus 236 Fk~~vdvg~vIlTKlDGhak---GGgAlSaVaaTksPIiFIGtG---EhmdDlE~F~pk~FvsrlLGmGDi~glvek~~e 309 (483)
T KOG0780|consen 236 FKETVDVGAVILTKLDGHAK---GGGALSAVAATKSPIIFIGTG---EHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQE 309 (483)
T ss_pred HHHhhccceEEEEecccCCC---CCceeeehhhhCCCEEEEecC---ccccccCCCChHHHHHHHhccccHHHHHHHHHH
Confidence 5555665 33332 222 233333334578999876555 3333321 1122333577777777777
Q ss_pred HHHcCCCcHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHH
Q 004092 488 VITNGKISPFARNIASIGRRSV--KNLMALETIEGYAMLLE 526 (774)
Q Consensus 488 Ll~d~~~~~~r~~m~~~ar~~a--k~fs~~~~a~~y~~L~e 526 (774)
+..++ .+.. .+.. -+|+...+.+++..+++
T Consensus 310 v~~~d--~~el-------~~kl~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 310 VGKDD--AKEL-------VEKLKQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred Hhhhh--HHHH-------HHHHHhCCccHHHHHHHHHHHHh
Confidence 76330 1111 1122 25999999999888775
No 350
>PRK13435 response regulator; Provisional
Probab=20.51 E-value=6.6e+02 Score=22.95 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=57.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc--CCCE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF--RKPI 452 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~--G~PV 452 (774)
.+++|+..... ....+....+..+.. .+......++....+. ..|++++-.......-+..+++-+.. .+|+
T Consensus 6 ~~iliid~~~~--~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~~~~~pi 81 (145)
T PRK13435 6 LKVLIVEDEAL--IALELEKLVEEAGHE--VVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSADGGVEV 81 (145)
T ss_pred ceEEEEcCcHH--HHHHHHHHHHhcCCe--EEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHhCCCCCE
Confidence 56677763211 113455555544432 1223444444544443 36888875322100124444554432 5677
Q ss_pred EEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 453 IAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 453 Iat-d~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|.- ........+..|..+++..+-+.+.+.+.|.+++..
T Consensus 82 i~ls~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (145)
T PRK13435 82 VFMTGNPERVPHDFAGALGVIAKPYSPRGVARALSYLSAR 121 (145)
T ss_pred EEEeCCHHHHHHHhcCcceeEeCCCCHHHHHHHHHHHHhc
Confidence 653 222222334556778888888888888888776653
No 351
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=20.49 E-value=1.5e+02 Score=33.72 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=35.8
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
..+++++|++..|..+.++..++..+.+.||++.|+-..+
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 4578899999999999999999999999999999987644
No 352
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=20.46 E-value=6e+02 Score=25.85 Aligned_cols=85 Identities=12% Similarity=0.189 Sum_probs=50.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCCch
Q 004092 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (774)
Q Consensus 147 ialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~~~ 226 (774)
|.+++++....-.......+...+.+.||++.++........ ....+...+...++|.|++.....
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~vdgiii~~~~~ 67 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRDTGYQLVIEPCDSGSPD--------------LAERVRALLQRSRVDGVILTPPLS 67 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHhCCCeEEEEeCCCCchH--------------HHHHHHHHHHHCCCCEEEEeCCCC
Confidence 567777766555566777788888999999988865432210 011223345567899888764432
Q ss_pred --hHHHHHHHhCCCCCCCEEEEEc
Q 004092 227 --KVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 227 --~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
...+.. + ...++|+|..-.
T Consensus 68 ~~~~~~~~-~--~~~~ipvv~i~~ 88 (270)
T cd01545 68 DNPELLDL-L--DEAGVPYVRIAP 88 (270)
T ss_pred CccHHHHH-H--HhcCCCEEEEec
Confidence 112222 2 235689887644
No 353
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=20.42 E-value=6.6e+02 Score=26.92 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=50.2
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++++...-....+..+.+.+.+.||.+.++........ . ......+...++|.|++.
T Consensus 63 ~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiIi~ 127 (342)
T PRK10014 63 QSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQ-L--------------AQRFSTLLNQGVDGVVIA 127 (342)
T ss_pred CCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH-H--------------HHHHHHHHhCCCCEEEEe
Confidence 4567899998765555556667788889999999887654321110 0 011222345679988876
Q ss_pred CCch--hHHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEA--KVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~--~~~l~~Ll~~~~~~ipvI~t 246 (774)
.... ...+..+. ..++|+|+.
T Consensus 128 ~~~~~~~~~~~~l~---~~~iPvV~~ 150 (342)
T PRK10014 128 GAAGSSDDLREMAE---EKGIPVVFA 150 (342)
T ss_pred CCCCCcHHHHHHHh---hcCCCEEEE
Confidence 5332 11222222 346898865
No 354
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=20.39 E-value=1.8e+02 Score=30.78 Aligned_cols=42 Identities=33% Similarity=0.301 Sum_probs=31.0
Q ss_pred ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc
Q 004092 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (774)
Q Consensus 415 ~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g 458 (774)
+++.+++..+|+++--+..+ ...-.+..|+..|+|||.-..|
T Consensus 52 ~dl~~ll~~~DvVid~t~p~--~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPE--ATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CCHHHhccCCCEEEECCCHH--HHHHHHHHHHHcCCCEEEECCC
Confidence 56777777899999666444 3455778899999999976444
No 355
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=20.24 E-value=3.6e+02 Score=29.44 Aligned_cols=85 Identities=21% Similarity=0.249 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCeEE-EEEcCCCc-----------chhhhhhcCccEEEcccch--hHHHHhhhcCccEEEEcCCchh
Q 004092 162 QMVTIAIALREIGYAIQ-VYSLEDGR-----------AHEVWRNIGVPVAILQTGR--EKASFVNWLNYDGILVNSLEAK 227 (774)
Q Consensus 162 ~v~~Lak~L~~~G~eV~-V~t~~~~~-----------~~~~~~~~gi~i~~l~~~~--~l~~~i~~~~~DIIhvhs~~~~ 227 (774)
......+.|.+.||++. |+|..+.+ ........++++....... .....+...++|++++.+....
T Consensus 11 ~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~i 90 (313)
T TIGR00460 11 FSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPDVIVVVSFGKI 90 (313)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhhCCCEEEEccchhh
Confidence 44566677777888875 55544321 2333456688876544332 3345577789999998765441
Q ss_pred HHHHHHHhCCCCCCC-EEEEEcCch
Q 004092 228 VVISNIMQEPFKSLP-LVWTIHEGT 251 (774)
Q Consensus 228 ~~l~~Ll~~~~~~ip-vI~tiHg~~ 251 (774)
+-..++.. .+ -++.+|...
T Consensus 91 -ip~~il~~----~~~g~iNiHpSl 110 (313)
T TIGR00460 91 -LPKEFLDL----FPYGCINVHPSL 110 (313)
T ss_pred -CCHHHHhh----ccCCEEEecCcc
Confidence 22223322 22 278899643
No 356
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=20.22 E-value=6.1e+02 Score=29.10 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=28.8
Q ss_pred EEEEecccccccccccHHHHHHHH-HHchhhcccCCCCCCCeEEEEEe-CCCC
Q 004092 337 IAIVGTQFMYRGLWLEHALILRAL-LPLFSEVSVENESNSPIKVMILS-GDST 387 (774)
Q Consensus 337 Il~vGsrl~~~KgiKg~~lLLeA~-~~L~~~~p~~~~~~~~v~LvIvG-G~~~ 387 (774)
|+..|.....+ .|-+-++.++ ..|.+..|+ +.+.++- -|..
T Consensus 3 i~i~G~~g~~N---~GdeAil~~ii~~l~~~~p~-------~~i~v~S~~P~~ 45 (426)
T PRK10017 3 LLILGNHTCGN---RGDSAILRGLLDAINILNPH-------AEVDVMSRYPVS 45 (426)
T ss_pred EEEEccccCCC---ccHHHHHHHHHHHHHhhCCC-------CeEEEEecCccc
Confidence 45566455556 7777777776 567777888 9999999 4443
No 357
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=20.15 E-value=8.6e+02 Score=26.03 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=50.6
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
...|+++.+.+...=.......+.+.+.+.||++.++....+. .... .....+...++|.|++..
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~~--------------~~i~~l~~~~vdgiii~~ 123 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWNNL-EKQR--------------AYLSMLAQKRVDGLLVMC 123 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCH-HHHH--------------HHHHHHHHcCCCEEEEec
Confidence 3568888888765555666677888888999998877643221 1111 111233456799888754
Q ss_pred Cc-hhHHHHHHHhCCCCCCCEEEEE
Q 004092 224 LE-AKVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 224 ~~-~~~~l~~Ll~~~~~~ipvI~ti 247 (774)
.. ....+..+. . ..++|+|..-
T Consensus 124 ~~~~~~~~~~l~-~-~~~iPvV~~d 146 (341)
T PRK10703 124 SEYPEPLLAMLE-E-YRHIPMVVMD 146 (341)
T ss_pred CCCCHHHHHHHH-h-cCCCCEEEEe
Confidence 32 212233332 1 2468988653
No 358
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=20.11 E-value=1.3e+02 Score=33.00 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCCChHHH--HHHHHHHHHHHcCCeEEEEEcCCC
Q 004092 144 KPQLALVFPDLLIDPQQL--QMVTIAIALREIGYAIQVYSLEDG 185 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~--~v~~Lak~L~~~G~eV~V~t~~~~ 185 (774)
.+.=.++++++..||+.+ ++..|++.|.++|+.+-|++.+.+
T Consensus 26 ~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 69 (311)
T TIGR00682 26 APVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG 69 (311)
T ss_pred CCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 344467899999887754 678899999999999999997654
Done!