Query 004092
Match_columns 774
No_of_seqs 416 out of 1773
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fro_A GLGA glycogen synthase; 100.0 1.2E-37 4.2E-42 347.1 32.7 363 143-531 1-433 (439)
2 3c48_A Predicted glycosyltrans 100.0 6.5E-36 2.2E-40 334.8 37.7 379 136-534 12-431 (438)
3 3okp_A GDP-mannose-dependent a 100.0 2.7E-36 9.3E-41 331.7 33.2 358 143-536 3-387 (394)
4 2jjm_A Glycosyl transferase, g 100.0 4.7E-36 1.6E-40 331.9 34.0 364 134-531 5-388 (394)
5 2x6q_A Trehalose-synthase TRET 100.0 7.3E-36 2.5E-40 332.8 35.2 354 141-529 37-415 (416)
6 2r60_A Glycosyl transferase, g 100.0 5.5E-36 1.9E-40 342.5 34.2 371 144-534 7-465 (499)
7 2qzs_A Glycogen synthase; glyc 100.0 1.1E-34 3.7E-39 330.1 29.3 360 145-531 1-479 (485)
8 1rzu_A Glycogen synthase 1; gl 100.0 1.5E-34 5.2E-39 328.9 29.6 362 145-533 1-480 (485)
9 2iw1_A Lipopolysaccharide core 100.0 8.9E-35 3E-39 317.8 24.6 350 145-529 1-372 (374)
10 2gek_A Phosphatidylinositol ma 100.0 1.5E-33 5.3E-38 311.4 27.4 350 141-533 17-388 (406)
11 3oy2_A Glycosyltransferase B73 100.0 1.9E-33 6.5E-38 312.7 26.4 344 145-533 1-395 (413)
12 3s28_A Sucrose synthase 1; gly 100.0 1E-32 3.5E-37 330.5 31.6 366 143-528 277-769 (816)
13 2iuy_A Avigt4, glycosyltransfe 100.0 2.3E-32 7.8E-37 296.5 23.8 307 143-531 2-338 (342)
14 3vue_A GBSS-I, granule-bound s 100.0 3.9E-32 1.3E-36 314.4 23.4 361 142-529 7-512 (536)
15 1f0k_A MURG, UDP-N-acetylgluco 100.0 1E-28 3.4E-33 269.6 28.7 319 144-528 6-357 (364)
16 2x0d_A WSAF; GT4 family, trans 100.0 3.3E-29 1.1E-33 281.0 16.5 340 141-529 43-410 (413)
17 2vsy_A XCC0866; transferase, g 100.0 1.4E-27 4.7E-32 277.1 24.0 333 141-531 202-562 (568)
18 2hy7_A Glucuronosyltransferase 99.9 2.4E-25 8.3E-30 248.8 18.6 330 141-546 11-394 (406)
19 1vgv_A UDP-N-acetylglucosamine 99.9 5.9E-26 2E-30 249.5 12.8 346 145-530 1-378 (384)
20 3beo_A UDP-N-acetylglucosamine 99.9 4.5E-25 1.5E-29 241.4 18.9 340 144-526 8-374 (375)
21 1uqt_A Alpha, alpha-trehalose- 99.9 1.3E-24 4.5E-29 247.8 22.3 212 298-528 219-454 (482)
22 2bfw_A GLGA glycogen synthase; 99.9 3.7E-24 1.3E-28 213.8 19.8 184 306-513 4-200 (200)
23 3nb0_A Glycogen [starch] synth 99.9 2.7E-23 9.2E-28 239.7 25.9 306 214-530 180-635 (725)
24 3qhp_A Type 1 capsular polysac 99.9 1.4E-23 4.6E-28 203.6 18.5 160 334-520 2-166 (166)
25 3t5t_A Putative glycosyltransf 99.9 4.5E-22 1.5E-26 225.5 23.4 287 215-529 149-474 (496)
26 2xci_A KDO-transferase, 3-deox 99.9 1.8E-21 6E-26 215.3 21.2 298 156-514 49-366 (374)
27 2f9f_A First mannosyl transfer 99.9 5.9E-22 2E-26 195.3 14.4 152 327-504 16-173 (177)
28 1v4v_A UDP-N-acetylglucosamine 99.9 4E-22 1.4E-26 218.7 13.8 338 145-530 6-366 (376)
29 3s2u_A UDP-N-acetylglucosamine 99.8 1.2E-18 4.1E-23 191.9 24.3 325 143-527 1-357 (365)
30 3otg_A CALG1; calicheamicin, T 99.8 1.5E-18 5.3E-23 192.3 25.2 328 141-527 17-409 (412)
31 3dzc_A UDP-N-acetylglucosamine 99.8 5.9E-18 2E-22 188.5 20.3 330 141-508 22-381 (396)
32 3ot5_A UDP-N-acetylglucosamine 99.8 1.6E-17 5.4E-22 185.5 20.3 340 142-523 25-390 (403)
33 2iyf_A OLED, oleandomycin glyc 99.7 2.8E-15 9.7E-20 167.4 30.6 162 333-528 232-401 (430)
34 4fzr_A SSFS6; structural genom 99.7 2.6E-16 8.9E-21 174.2 21.7 321 143-522 14-396 (398)
35 3tsa_A SPNG, NDP-rhamnosyltran 99.7 5.2E-16 1.8E-20 171.0 22.6 325 144-526 1-388 (391)
36 3oti_A CALG3; calicheamicin, T 99.7 4.5E-15 1.5E-19 164.3 26.1 324 142-525 18-396 (398)
37 3rhz_A GTF3, nucleotide sugar 99.7 4.5E-15 1.5E-19 161.8 24.3 303 137-516 5-324 (339)
38 3ia7_A CALG4; glycosysltransfe 99.6 5.3E-14 1.8E-18 154.9 27.4 115 403-528 279-400 (402)
39 3rsc_A CALG2; TDP, enediyne, s 99.6 5.1E-13 1.7E-17 148.2 30.5 332 143-527 19-414 (415)
40 2p6p_A Glycosyl transferase; X 99.5 9.3E-13 3.2E-17 144.7 25.7 161 332-526 209-379 (384)
41 2yjn_A ERYCIII, glycosyltransf 99.4 1.6E-11 5.4E-16 137.9 26.9 161 333-526 267-435 (441)
42 4hwg_A UDP-N-acetylglucosamine 99.4 1.2E-12 4.2E-17 145.0 11.0 338 144-525 9-374 (385)
43 2iya_A OLEI, oleandomycin glyc 99.3 2.5E-09 8.4E-14 119.1 34.5 114 402-526 302-421 (424)
44 3q3e_A HMW1C-like glycosyltran 99.2 1.7E-10 5.7E-15 133.1 19.2 310 162-527 293-626 (631)
45 4amg_A Snogd; transferase, pol 99.1 5.8E-09 2E-13 114.6 25.2 110 402-524 285-398 (400)
46 1iir_A Glycosyltransferase GTF 99.1 1.8E-08 6.1E-13 112.0 26.6 154 334-530 239-400 (415)
47 3h4t_A Glycosyltransferase GTF 99.1 2.3E-08 8E-13 110.9 26.5 155 332-524 220-380 (404)
48 2o6l_A UDP-glucuronosyltransfe 99.0 2.5E-09 8.6E-14 103.8 13.4 132 332-502 20-162 (170)
49 1rrv_A Glycosyltransferase GTF 99.0 5.5E-08 1.9E-12 108.0 24.4 138 334-509 238-384 (416)
50 4gyw_A UDP-N-acetylglucosamine 98.7 4.2E-06 1.4E-10 99.9 28.7 183 324-529 513-706 (723)
51 2c4m_A Glycogen phosphorylase; 98.1 3.9E-05 1.3E-09 90.4 16.5 191 325-530 505-721 (796)
52 1l5w_A Maltodextrin phosphoryl 98.0 5.2E-05 1.8E-09 89.4 15.6 191 324-530 514-732 (796)
53 2gj4_A Glycogen phosphorylase, 98.0 0.00012 4.2E-09 86.5 17.4 149 324-481 538-707 (824)
54 3hbm_A UDP-sugar hydrolase; PS 97.8 0.0021 7.1E-08 67.7 22.2 242 146-457 2-252 (282)
55 1psw_A ADP-heptose LPS heptosy 97.1 0.058 2E-06 57.5 23.4 115 321-455 167-286 (348)
56 2c1x_A UDP-glucose flavonoid 3 96.7 0.019 6.4E-07 64.5 15.7 95 407-512 326-429 (456)
57 3hbf_A Flavonoid 3-O-glucosylt 96.4 0.035 1.2E-06 62.3 14.6 95 407-510 328-429 (454)
58 2pq6_A UDP-glucuronosyl/UDP-gl 96.2 0.18 6E-06 56.8 19.3 95 407-512 354-456 (482)
59 3tov_A Glycosyl transferase fa 95.7 1.4 4.7E-05 47.3 22.8 112 324-458 175-289 (349)
60 2vch_A Hydroquinone glucosyltr 95.5 0.22 7.7E-06 56.0 16.4 93 408-509 341-443 (480)
61 2acv_A Triterpene UDP-glucosyl 95.4 0.25 8.4E-06 55.4 16.4 78 407-491 333-425 (463)
62 2jzc_A UDP-N-acetylglucosamine 95.1 0.016 5.6E-07 58.7 4.9 46 407-458 115-161 (224)
63 3l7i_A Teichoic acid biosynthe 94.9 0.17 5.9E-06 60.0 13.7 242 215-491 417-683 (729)
64 1ygp_A Yeast glycogen phosphor 91.9 5.6 0.00019 47.3 19.0 139 332-474 598-760 (879)
65 2gt1_A Lipopolysaccharide hept 87.6 1.2 4E-05 46.9 8.3 139 328-491 173-322 (326)
66 3kht_A Response regulator; PSI 74.1 23 0.00078 31.3 10.7 111 377-491 6-128 (144)
67 3k4h_A Putative transcriptiona 73.9 36 0.0012 34.1 13.4 88 143-248 7-100 (292)
68 1k68_A Phytochrome response re 73.2 26 0.00089 30.3 10.7 111 377-491 3-131 (140)
69 3heb_A Response regulator rece 71.9 25 0.00084 31.5 10.4 110 377-490 5-134 (152)
70 3gbv_A Putative LACI-family tr 67.5 1E+02 0.0035 30.7 15.2 90 143-248 7-102 (304)
71 2zay_A Response regulator rece 66.0 34 0.0012 30.2 10.0 109 377-491 9-128 (147)
72 3kcn_A Adenylate cyclase homol 65.3 73 0.0025 28.2 12.2 108 377-491 5-123 (151)
73 3cg4_A Response regulator rece 63.5 72 0.0025 27.6 11.6 109 377-491 8-127 (142)
74 1jbe_A Chemotaxis protein CHEY 63.0 61 0.0021 27.6 10.8 109 377-490 5-124 (128)
75 3jte_A Response regulator rece 62.3 46 0.0016 29.1 10.1 109 377-491 4-123 (143)
76 3cnb_A DNA-binding response re 61.5 56 0.0019 28.3 10.5 110 377-491 9-130 (143)
77 1i3c_A Response regulator RCP1 60.7 59 0.002 28.8 10.6 110 377-490 9-136 (149)
78 3ilh_A Two component response 60.3 37 0.0013 29.7 9.0 111 377-491 10-139 (146)
79 3h1g_A Chemotaxis protein CHEY 59.6 72 0.0025 27.3 10.7 110 377-491 6-127 (129)
80 3l49_A ABC sugar (ribose) tran 58.5 41 0.0014 33.6 10.0 93 141-248 2-94 (291)
81 3g1w_A Sugar ABC transporter; 58.1 38 0.0013 34.2 9.8 89 143-248 3-94 (305)
82 4e7p_A Response regulator; DNA 58.1 47 0.0016 29.5 9.4 112 376-491 20-140 (150)
83 1k66_A Phytochrome response re 57.4 60 0.002 28.3 9.9 111 377-491 7-138 (149)
84 1qkk_A DCTD, C4-dicarboxylate 57.0 74 0.0025 28.2 10.6 109 377-491 4-121 (155)
85 3eul_A Possible nitrate/nitrit 57.0 56 0.0019 29.0 9.7 113 375-491 14-135 (152)
86 2bw0_A 10-FTHFDH, 10-formyltet 54.6 33 0.0011 36.3 8.7 105 135-250 13-130 (329)
87 2qvg_A Two component response 54.2 69 0.0024 27.8 9.7 111 377-491 8-135 (143)
88 2qsj_A DNA-binding response re 53.6 35 0.0012 30.4 7.7 110 377-491 4-124 (154)
89 3jy6_A Transcriptional regulat 50.3 92 0.0031 30.8 11.0 89 142-248 5-93 (276)
90 3m9w_A D-xylose-binding peripl 50.0 47 0.0016 33.8 8.9 87 144-248 2-91 (313)
91 4dad_A Putative pilus assembly 49.5 29 0.00098 30.7 6.3 110 376-491 20-141 (146)
92 3o1i_D Periplasmic protein TOR 49.4 40 0.0014 33.9 8.1 90 143-246 4-93 (304)
93 3ksm_A ABC-type sugar transpor 49.0 47 0.0016 32.7 8.5 88 145-248 1-92 (276)
94 3gt7_A Sensor protein; structu 49.0 1E+02 0.0035 27.4 10.2 109 377-491 8-127 (154)
95 3grc_A Sensor protein, kinase; 48.4 1.3E+02 0.0045 25.8 12.0 109 377-491 7-127 (140)
96 3h75_A Periplasmic sugar-bindi 47.5 77 0.0026 32.8 10.3 92 143-249 2-95 (350)
97 3hzh_A Chemotaxis response reg 47.4 61 0.0021 29.1 8.3 108 377-490 37-156 (157)
98 2rjn_A Response regulator rece 47.0 1.3E+02 0.0046 26.4 10.6 109 377-491 8-126 (154)
99 3l6u_A ABC-type sugar transpor 46.7 53 0.0018 32.8 8.6 88 143-248 7-97 (293)
100 3nhm_A Response regulator; pro 46.6 1.3E+02 0.0046 25.4 13.1 108 377-491 5-122 (133)
101 4fb5_A Probable oxidoreductase 46.5 30 0.001 36.7 6.9 98 333-454 24-123 (393)
102 3cg0_A Response regulator rece 46.2 1.3E+02 0.0045 25.7 10.2 110 377-491 10-128 (140)
103 3kke_A LACI family transcripti 45.9 99 0.0034 31.1 10.6 87 143-248 14-102 (303)
104 3uug_A Multiple sugar-binding 45.7 75 0.0025 32.4 9.7 87 144-248 3-92 (330)
105 2r25_B Osmosensing histidine p 45.5 1.3E+02 0.0044 25.9 10.0 110 377-491 3-127 (133)
106 3egc_A Putative ribose operon 45.4 87 0.003 31.2 10.0 89 143-248 7-95 (291)
107 3f6c_A Positive transcription 45.3 1E+02 0.0036 26.2 9.3 109 377-491 2-120 (134)
108 2pln_A HP1043, response regula 45.2 1.2E+02 0.004 26.1 9.7 106 376-491 18-133 (137)
109 1dbw_A Transcriptional regulat 44.9 1.3E+02 0.0045 25.3 9.8 109 377-491 4-121 (126)
110 2fn9_A Ribose ABC transporter, 44.8 63 0.0021 32.2 8.8 87 143-247 1-90 (290)
111 2qzj_A Two-component response 44.8 99 0.0034 26.8 9.2 109 377-491 5-121 (136)
112 4dzz_A Plasmid partitioning pr 44.7 97 0.0033 29.1 9.7 41 146-186 2-42 (206)
113 3to5_A CHEY homolog; alpha(5)b 44.6 1.2E+02 0.0043 27.1 9.8 109 377-490 13-132 (134)
114 1rcu_A Conserved hypothetical 44.4 16 0.00054 35.8 3.8 68 417-488 112-192 (195)
115 2ixd_A LMBE-related protein; h 43.3 81 0.0028 31.6 9.1 42 143-186 2-43 (242)
116 3lua_A Response regulator rece 43.3 47 0.0016 29.0 6.7 109 377-491 5-127 (140)
117 3n53_A Response regulator rece 42.8 1.6E+02 0.0055 25.3 11.6 108 377-491 4-122 (140)
118 2lpm_A Two-component response 42.8 45 0.0015 29.8 6.3 110 375-489 7-120 (123)
119 3hv2_A Response regulator/HD d 42.1 1.8E+02 0.0061 25.5 11.4 110 376-491 14-133 (153)
120 3hdg_A Uncharacterized protein 42.1 1E+02 0.0035 26.5 8.8 109 377-491 8-125 (137)
121 3e9m_A Oxidoreductase, GFO/IDH 41.4 1.3E+02 0.0043 31.3 10.7 66 377-455 30-97 (330)
122 3brs_A Periplasmic binding pro 40.9 74 0.0025 31.6 8.5 91 142-246 3-96 (289)
123 3o74_A Fructose transport syst 40.1 1.2E+02 0.0041 29.6 9.9 88 143-248 1-90 (272)
124 3en0_A Cyanophycinase; serine 40.0 56 0.0019 33.9 7.4 82 377-460 57-156 (291)
125 4h3v_A Oxidoreductase domain p 39.5 48 0.0016 35.0 7.1 65 377-454 38-104 (390)
126 3hdv_A Response regulator; PSI 39.5 1.8E+02 0.0061 24.8 10.5 109 377-491 8-127 (136)
127 3t6k_A Response regulator rece 39.0 1.9E+02 0.0064 24.9 10.4 109 377-491 5-124 (136)
128 2qr3_A Two-component system re 39.0 1.8E+02 0.0062 24.7 10.4 109 377-491 4-126 (140)
129 3tb6_A Arabinose metabolism tr 38.9 1.1E+02 0.0038 30.3 9.6 87 144-248 15-107 (298)
130 3gl9_A Response regulator; bet 38.6 1.8E+02 0.006 24.5 10.1 107 378-490 4-121 (122)
131 3rot_A ABC sugar transporter, 38.6 69 0.0024 32.2 7.9 89 143-248 2-94 (297)
132 4gqa_A NAD binding oxidoreduct 38.6 68 0.0023 34.5 8.3 100 333-455 25-126 (412)
133 3g85_A Transcriptional regulat 38.4 78 0.0027 31.5 8.3 90 142-248 9-99 (289)
134 3ehd_A Uncharacterized conserv 38.1 43 0.0015 31.7 5.6 69 419-489 65-161 (162)
135 3gv0_A Transcriptional regulat 37.1 1.3E+02 0.0045 29.9 9.7 88 143-248 7-97 (288)
136 2dri_A D-ribose-binding protei 37.0 88 0.003 30.9 8.3 86 144-247 1-89 (271)
137 3e61_A Putative transcriptiona 36.8 1.2E+02 0.004 29.9 9.2 87 143-248 7-94 (277)
138 8abp_A L-arabinose-binding pro 36.4 82 0.0028 31.6 8.1 88 144-247 2-89 (306)
139 1zh8_A Oxidoreductase; TM0312, 36.3 99 0.0034 32.3 8.9 95 332-455 16-112 (340)
140 3dm5_A SRP54, signal recogniti 36.3 1.1E+02 0.0037 33.7 9.4 80 144-224 99-191 (443)
141 2fvy_A D-galactose-binding per 35.9 1.5E+02 0.0051 29.6 10.0 86 144-247 2-91 (309)
142 3h5i_A Response regulator/sens 35.8 2.1E+02 0.0072 24.6 12.9 110 377-491 6-124 (140)
143 1dbq_A Purine repressor; trans 35.8 1.6E+02 0.0053 29.1 10.0 89 143-248 6-95 (289)
144 3eod_A Protein HNR; response r 35.4 1.7E+02 0.0057 24.7 9.0 109 377-491 8-126 (130)
145 2l2q_A PTS system, cellobiose- 35.3 1.7E+02 0.0059 25.1 8.8 97 377-491 5-105 (109)
146 4fyk_A Deoxyribonucleoside 5'- 35.2 48 0.0016 31.0 5.4 73 418-491 63-142 (152)
147 3c3k_A Alanine racemase; struc 34.5 2.2E+02 0.0076 28.1 11.0 86 143-247 7-93 (285)
148 3r0j_A Possible two component 33.2 3.1E+02 0.011 26.5 11.6 109 377-491 24-141 (250)
149 3cz5_A Two-component response 33.0 2.3E+02 0.008 24.7 9.9 110 377-491 6-125 (153)
150 1qo0_D AMIR; binding protein, 32.7 1.5E+02 0.0052 27.5 8.8 106 377-491 13-125 (196)
151 3moi_A Probable dehydrogenase; 32.2 1.7E+02 0.0057 31.1 10.0 65 377-455 28-94 (387)
152 2f62_A Nucleoside 2-deoxyribos 31.8 2E+02 0.0068 26.9 9.2 75 378-455 11-104 (161)
153 1e2b_A Enzyme IIB-cellobiose; 31.7 71 0.0024 27.7 5.7 64 379-447 7-71 (106)
154 2iz6_A Molybdenum cofactor car 31.7 28 0.00095 33.4 3.2 70 420-491 104-174 (176)
155 3bbl_A Regulatory protein of L 31.4 2.1E+02 0.0071 28.3 10.2 87 143-247 3-94 (287)
156 2fep_A Catabolite control prot 31.3 2.3E+02 0.0078 28.1 10.5 88 142-247 14-102 (289)
157 1s8n_A Putative antiterminator 31.2 3.2E+02 0.011 25.3 13.0 109 377-491 14-131 (205)
158 1qpz_A PURA, protein (purine n 31.2 2.7E+02 0.0093 28.3 11.3 90 143-248 57-146 (340)
159 3ohs_X Trans-1,2-dihydrobenzen 31.0 1.2E+02 0.004 31.6 8.3 66 377-455 29-96 (334)
160 3d02_A Putative LACI-type tran 31.0 1.6E+02 0.0053 29.4 9.1 89 144-246 4-92 (303)
161 1p6q_A CHEY2; chemotaxis, sign 30.8 2.4E+02 0.0081 23.6 9.7 110 377-491 7-127 (129)
162 3uuw_A Putative oxidoreductase 30.7 80 0.0027 32.4 6.9 65 377-455 32-96 (308)
163 3dty_A Oxidoreductase, GFO/IDH 30.7 1.9E+02 0.0066 30.8 10.2 67 377-454 40-114 (398)
164 2qxy_A Response regulator; reg 30.7 1.6E+02 0.0056 25.2 8.2 108 377-491 5-121 (142)
165 3b2n_A Uncharacterized protein 30.6 2.4E+02 0.0081 24.0 9.2 111 377-491 4-123 (133)
166 1tmy_A CHEY protein, TMY; chem 30.2 2.3E+02 0.0079 23.3 8.9 108 377-489 3-119 (120)
167 4had_A Probable oxidoreductase 30.1 87 0.003 32.7 7.2 65 377-454 49-115 (350)
168 3u7r_A NADPH-dependent FMN red 29.9 1E+02 0.0035 29.7 7.0 42 143-184 1-42 (190)
169 3dbi_A Sugar-binding transcrip 29.8 2.6E+02 0.0089 28.4 10.8 89 143-248 60-151 (338)
170 3db2_A Putative NADPH-dependen 29.8 2.5E+02 0.0084 29.2 10.7 65 377-455 30-96 (354)
171 3h5o_A Transcriptional regulat 29.5 1.9E+02 0.0066 29.5 9.7 88 143-248 61-149 (339)
172 1ydw_A AX110P-like protein; st 28.9 2E+02 0.0068 30.1 9.8 69 377-455 31-101 (362)
173 2rjo_A Twin-arginine transloca 28.7 1.5E+02 0.005 30.3 8.6 87 143-247 4-95 (332)
174 3cs3_A Sugar-binding transcrip 28.7 2.2E+02 0.0075 27.9 9.7 42 143-184 7-48 (277)
175 2iks_A DNA-binding transcripti 28.7 2.6E+02 0.0088 27.7 10.3 90 143-248 19-108 (293)
176 3kjx_A Transcriptional regulat 28.6 2.3E+02 0.0079 28.9 10.2 88 142-247 66-154 (344)
177 3l4e_A Uncharacterized peptida 28.4 1.7E+02 0.0059 28.4 8.5 78 377-458 28-122 (206)
178 3j20_B 30S ribosomal protein S 28.4 55 0.0019 32.1 4.7 100 351-464 47-150 (202)
179 3q2i_A Dehydrogenase; rossmann 28.3 1.8E+02 0.006 30.4 9.2 65 377-455 39-105 (354)
180 3cfy_A Putative LUXO repressor 28.2 2.8E+02 0.0097 23.7 12.2 108 378-491 6-122 (137)
181 2qv0_A Protein MRKE; structura 28.1 2.8E+02 0.0096 23.7 11.0 110 377-491 10-127 (143)
182 3e3m_A Transcriptional regulat 28.0 2.3E+02 0.0077 29.2 10.0 86 143-246 69-155 (355)
183 3rc1_A Sugar 3-ketoreductase; 27.9 1.3E+02 0.0045 31.5 8.1 65 377-455 53-119 (350)
184 3qk7_A Transcriptional regulat 27.8 2.3E+02 0.0078 28.2 9.7 87 143-248 5-96 (294)
185 2a5l_A Trp repressor binding p 27.5 90 0.0031 29.4 6.2 39 145-184 6-44 (200)
186 3mm4_A Histidine kinase homolo 27.5 2.3E+02 0.0077 26.8 9.2 108 377-491 62-196 (206)
187 3miz_A Putative transcriptiona 27.1 82 0.0028 31.6 6.2 88 143-248 12-100 (301)
188 2ioy_A Periplasmic sugar-bindi 27.0 1.7E+02 0.0058 28.9 8.5 84 145-246 2-88 (283)
189 1yio_A Response regulatory pro 26.9 3.5E+02 0.012 25.0 10.4 109 377-491 5-122 (208)
190 3cea_A MYO-inositol 2-dehydrog 26.9 2.2E+02 0.0075 29.3 9.7 66 377-455 34-101 (346)
191 2h3h_A Sugar ABC transporter, 26.6 1.8E+02 0.0062 29.2 8.7 86 145-248 2-90 (313)
192 3nbm_A PTS system, lactose-spe 26.5 72 0.0025 27.9 4.7 76 377-457 7-86 (108)
193 1zgz_A Torcad operon transcrip 26.5 2.7E+02 0.0093 22.9 9.8 107 378-490 4-118 (122)
194 1dcf_A ETR1 protein; beta-alph 26.2 2.5E+02 0.0085 23.8 8.5 109 377-491 8-129 (136)
195 2qh8_A Uncharacterized protein 26.1 2.2E+02 0.0074 28.6 9.2 88 143-248 7-98 (302)
196 3f6p_A Transcriptional regulat 26.0 2.8E+02 0.0097 23.0 9.5 108 378-491 4-119 (120)
197 3v5n_A Oxidoreductase; structu 26.0 1.9E+02 0.0066 31.0 9.2 68 377-455 65-140 (417)
198 3c97_A Signal transduction his 26.0 3.1E+02 0.011 23.4 13.2 109 377-491 11-130 (140)
199 3hs3_A Ribose operon repressor 25.8 1.4E+02 0.0049 29.5 7.6 85 142-248 8-93 (277)
200 1uan_A Hypothetical protein TT 25.7 2E+02 0.007 28.2 8.6 40 145-186 2-41 (227)
201 3huu_A Transcription regulator 25.7 1.5E+02 0.0051 29.7 7.9 88 143-248 21-114 (305)
202 4gmf_A Yersiniabactin biosynth 25.7 71 0.0024 34.2 5.5 93 333-455 6-100 (372)
203 1p2f_A Response regulator; DRR 25.7 1.9E+02 0.0065 27.3 8.3 108 377-491 3-117 (220)
204 2j48_A Two-component sensor ki 25.6 1.8E+02 0.0061 23.6 7.2 106 378-489 3-116 (119)
205 2ixa_A Alpha-N-acetylgalactosa 25.6 2.5E+02 0.0085 30.4 10.1 72 377-455 45-121 (444)
206 2rgy_A Transcriptional regulat 25.6 2.8E+02 0.0095 27.4 9.9 90 143-247 7-97 (290)
207 3u3x_A Oxidoreductase; structu 25.5 2.1E+02 0.0071 30.1 9.2 66 377-455 51-118 (361)
208 3gyb_A Transcriptional regulat 25.4 2.5E+02 0.0084 27.5 9.4 84 143-248 4-87 (280)
209 3fgn_A Dethiobiotin synthetase 25.1 89 0.0031 31.5 5.8 47 136-182 17-63 (251)
210 2cqk_A C-MPL binding protein; 25.0 24 0.00081 30.8 1.2 40 635-678 62-101 (101)
211 4gi5_A Quinone reductase; prot 25.0 1E+02 0.0035 31.7 6.3 45 140-184 18-63 (280)
212 2l0l_A Oxidoreductase THAT cat 24.9 10 0.00035 24.8 -0.8 9 668-676 1-9 (27)
213 1mb3_A Cell division response 24.9 2.9E+02 0.01 22.7 10.4 108 378-491 3-121 (124)
214 2ayx_A Sensor kinase protein R 24.7 4.7E+02 0.016 25.4 11.3 109 377-491 130-247 (254)
215 3crn_A Response regulator rece 24.6 3.2E+02 0.011 23.1 10.5 109 377-491 4-121 (132)
216 2vk2_A YTFQ, ABC transporter p 24.5 1.7E+02 0.0058 29.3 8.0 86 144-247 2-90 (306)
217 2fqx_A Membrane lipoprotein TM 24.4 5.6E+02 0.019 25.9 12.2 86 144-246 4-92 (318)
218 3i42_A Response regulator rece 24.2 3.1E+02 0.011 22.8 10.5 109 377-491 4-122 (127)
219 3lft_A Uncharacterized protein 24.1 2.6E+02 0.0088 27.9 9.3 84 145-246 3-89 (295)
220 3n0v_A Formyltetrahydrofolate 24.1 2.3E+02 0.0077 29.2 8.8 81 141-226 87-177 (286)
221 2gwr_A DNA-binding response re 24.0 4.7E+02 0.016 24.8 11.7 109 377-491 6-122 (238)
222 2hsg_A Glucose-resistance amyl 23.9 3E+02 0.01 27.8 9.9 87 143-247 59-146 (332)
223 3tqq_A Methionyl-tRNA formyltr 23.8 1.3E+02 0.0044 31.4 6.9 98 143-251 1-112 (314)
224 3evn_A Oxidoreductase, GFO/IDH 23.7 94 0.0032 32.2 5.9 39 415-455 57-97 (329)
225 3jvd_A Transcriptional regulat 23.5 2.2E+02 0.0076 29.1 8.8 82 143-248 63-144 (333)
226 3clk_A Transcription regulator 23.3 2.8E+02 0.0095 27.4 9.3 86 143-246 7-94 (290)
227 2lkq_A Immunoglobulin lambda-l 23.2 29 0.00098 21.6 1.0 11 33-43 4-14 (26)
228 2zki_A 199AA long hypothetical 23.1 1.3E+02 0.0044 28.3 6.4 39 144-184 4-42 (199)
229 3d8u_A PURR transcriptional re 22.8 1.9E+02 0.0064 28.3 7.8 86 143-246 2-88 (275)
230 3av3_A Phosphoribosylglycinami 22.7 2.4E+02 0.0083 27.4 8.4 97 145-250 4-113 (212)
231 2xxa_A Signal recognition part 22.7 2.4E+02 0.0083 30.7 9.2 41 143-184 98-139 (433)
232 3brq_A HTH-type transcriptiona 22.6 3.7E+02 0.013 26.3 10.1 88 143-247 18-108 (296)
233 1ys7_A Transcriptional regulat 22.4 4.9E+02 0.017 24.4 12.8 109 377-491 8-125 (233)
234 3ezy_A Dehydrogenase; structur 22.3 1.5E+02 0.0053 30.7 7.3 66 377-455 27-94 (344)
235 2ark_A Flavodoxin; FMN, struct 22.3 1.5E+02 0.0052 27.8 6.7 39 145-184 5-44 (188)
236 2o20_A Catabolite control prot 22.2 3.6E+02 0.012 27.3 10.1 87 143-247 62-149 (332)
237 1n57_A Chaperone HSP31, protei 22.1 2.3E+02 0.0079 29.0 8.4 75 106-186 14-101 (291)
238 1jye_A Lactose operon represso 22.0 3.9E+02 0.013 27.3 10.4 88 143-246 60-148 (349)
239 3lou_A Formyltetrahydrofolate 21.8 2.9E+02 0.0099 28.5 9.0 81 141-226 92-182 (292)
240 3fni_A Putative diflavin flavo 21.6 1.6E+02 0.0056 27.0 6.5 40 144-184 4-43 (159)
241 1ydg_A Trp repressor binding p 21.6 1.6E+02 0.0054 28.1 6.7 40 144-184 6-45 (211)
242 3m2t_A Probable dehydrogenase; 21.1 1.4E+02 0.0047 31.5 6.6 66 377-455 31-98 (359)
243 1tjy_A Sugar transport protein 21.1 2E+02 0.0069 29.1 7.8 86 144-246 3-91 (316)
244 3fwz_A Inner membrane protein 21.0 2.1E+02 0.0073 25.2 7.1 87 162-249 18-107 (140)
245 3k9c_A Transcriptional regulat 20.9 3.9E+02 0.013 26.3 9.9 86 143-248 11-96 (289)
246 2o6l_A UDP-glucuronosyltransfe 20.7 4.5E+02 0.016 23.4 9.9 93 145-248 22-114 (170)
247 3bil_A Probable LACI-family tr 20.7 3.4E+02 0.011 27.8 9.6 86 143-246 65-151 (348)
248 1gud_A ALBP, D-allose-binding 20.6 2.4E+02 0.0083 27.9 8.2 37 145-181 2-38 (288)
249 2hy5_A Putative sulfurtransfer 20.6 1.6E+02 0.0054 26.1 6.0 41 146-186 2-44 (130)
250 2h54_A Caspase-1; allosteric s 20.4 1.5E+02 0.0053 28.2 6.1 39 145-183 43-87 (178)
251 3f6r_A Flavodoxin; FMN binding 20.4 1.5E+02 0.0051 26.5 5.9 39 145-184 2-40 (148)
252 2gkg_A Response regulator homo 20.2 3.6E+02 0.012 22.1 10.3 108 377-491 6-125 (127)
253 3rqi_A Response regulator prot 20.2 2.4E+02 0.0083 25.8 7.6 109 377-491 8-125 (184)
254 1gq2_A Malic enzyme; oxidoredu 20.2 2E+02 0.0069 32.4 7.7 91 355-454 268-392 (555)
255 1vi6_A 30S ribosomal protein S 20.1 59 0.002 32.0 3.1 100 351-464 51-154 (208)
256 2x7x_A Sensor protein; transfe 20.0 3.1E+02 0.01 27.7 9.0 89 143-247 5-94 (325)
No 1
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=1.2e-37 Score=347.07 Aligned_cols=363 Identities=15% Similarity=0.158 Sum_probs=277.5
Q ss_pred CCCeEEEEecCC---CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh------------------hhcCccEEEc
Q 004092 143 RKPQLALVFPDL---LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW------------------RNIGVPVAIL 201 (774)
Q Consensus 143 rk~rialV~~~L---~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~------------------~~~gi~i~~l 201 (774)
|++||++|.+.. ..||.+.++..+++.|.++||+|+|++.......... ...++++..+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 688999999884 4599999999999999999999999997653321110 2345555544
Q ss_pred cc----------------ch-------hHHHHhh-----hcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhh
Q 004092 202 QT----------------GR-------EKASFVN-----WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA 253 (774)
Q Consensus 202 ~~----------------~~-------~l~~~i~-----~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~ 253 (774)
+. .. .....++ ..+||+||+|++... .+..++. +..++|+|+++|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~-~~~~~~~-~~~~~~~v~~~h~~~~~ 158 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTV-FAGALIK-KYFKIPAVFTIHRLNKS 158 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGH-HHHHHHH-HHHCCCEEEEESCCCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhh-hhHHHHh-hccCCCEEEEecccccc
Confidence 33 00 1111222 349999999987763 4444443 35679999999984311
Q ss_pred hhHHHhh-hhh-----hhHHHHHHHHHHHhccEEEccCCcchhhcc---cCCCCCEEEeCCCCCCcccccccC-----ch
Q 004092 254 TRARNYA-SSG-----QLELLNDWKKVFNRATVVVFPDYVLPMMYS---AFDAGNYYVIPGSPAKAWEADTNM-----DL 319 (774)
Q Consensus 254 ~~~~k~~-~~~-----~~~li~~~~~~~~~a~~vv~ps~~~~~i~~---~v~~~ki~vIpg~gvd~~~~~~~~-----~~ 319 (774)
....... ... ........+..+..++.+++.+........ .....++.+||+ |+|...+.+.. ..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~n-gvd~~~~~~~~~~~~~~~ 237 (439)
T 3fro_A 159 KLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFN-GIDCSFWNESYLTGSRDE 237 (439)
T ss_dssp CEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCC-CCCTTTSCGGGSCSCHHH
T ss_pred cCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCC-CCCchhcCcccccchhhh
Confidence 0000000 000 000012334456678877777665332222 245688999994 88875544331 12
Q ss_pred hhHHHHHHhCCCCCCEEEEEEecccc-cccccccHHHHHHHHHHchhhc--ccCCCCCCCeEEEEEe-CCCCCchHHHHH
Q 004092 320 YNDTVRVKMGFKPDDLVIAIVGTQFM-YRGLWLEHALILRALLPLFSEV--SVENESNSPIKVMILS-GDSTSNYSVVIE 395 (774)
Q Consensus 320 ~k~~lR~~lgl~~~~~vIl~vGsrl~-~~KgiKg~~lLLeA~~~L~~~~--p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~ 395 (774)
.+..++++++++++ ++++++| ++. +. ||++.+++|++.+.+++ ++ ++|+|+| |+ +.|.+.++
T Consensus 238 ~~~~~~~~~~~~~~-~~i~~~G-~~~~~~---Kg~~~li~a~~~l~~~~~~~~-------~~l~i~G~g~--~~~~~~l~ 303 (439)
T 3fro_A 238 RKKSLLSKFGMDEG-VTFMFIG-RFDRGQ---KGVDVLLKAIEILSSKKEFQE-------MRFIIIGKGD--PELEGWAR 303 (439)
T ss_dssp HHHHHHHHHTCCSC-EEEEEEC-CSSCTT---BCHHHHHHHHHHHHTSGGGGG-------EEEEEECCCC--HHHHHHHH
T ss_pred hHHHHHHHcCCCCC-cEEEEEc-cccccc---ccHHHHHHHHHHHHhcccCCC-------eEEEEEcCCC--hhHHHHHH
Confidence 36788999999888 9999999 887 77 99999999999999877 77 9999999 65 34668899
Q ss_pred HHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEE
Q 004092 396 AIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLF 473 (774)
Q Consensus 396 ~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv 473 (774)
+++++++ + .+.|.|++ +++..+|++||++|+||..| |||++++||||||+|||+|+.+|+.|++.++ +|+++
T Consensus 304 ~~~~~~~--~-~~~~~g~~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~ 377 (439)
T 3fro_A 304 SLEEKHG--N-VKVITEMLSREFVRELYGSVDFVIIPSYFE--PFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILV 377 (439)
T ss_dssp HHHHHCT--T-EEEECSCCCHHHHHHHHTTCSEEEECBSCC--SSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEE
T ss_pred HHHhhcC--C-EEEEcCCCCHHHHHHHHHHCCEEEeCCCCC--CccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEe
Confidence 9999888 5 79999954 78999999999999999998 8999999999999999999999999999887 89999
Q ss_pred cCCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 004092 474 PKENIKALTHIILQVIT-NGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (774)
Q Consensus 474 ~~~d~e~La~aI~~Ll~-d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~~ 531 (774)
+++|+++++++|.++++ + ++.+++|++++++.+++|+|+.++++|.++|+++++.
T Consensus 378 ~~~d~~~la~~i~~ll~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (439)
T 3fro_A 378 KAGDPGELANAILKALELS---RSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 433 (439)
T ss_dssp CTTCHHHHHHHHHHHHHHT---TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSCC
T ss_pred CCCCHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 9 8999999999999998899999999999999998764
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=6.5e-36 Score=334.82 Aligned_cols=379 Identities=14% Similarity=0.147 Sum_probs=273.9
Q ss_pred cccCCCCCCCeEEEEecCCC---------CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh--hhhcCccEEEcccc
Q 004092 136 KLHRFGYRKPQLALVFPDLL---------IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV--WRNIGVPVAILQTG 204 (774)
Q Consensus 136 ~~~r~~~rk~rialV~~~L~---------~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~--~~~~gi~i~~l~~~ 204 (774)
+-..-+-+++||++|..... .||.+.++..+++.|.+.||+|+|++......... ....++.+..++..
T Consensus 12 ~~~~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~ 91 (438)
T 3c48_A 12 SGLVPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAG 91 (438)
T ss_dssp -------CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEETTEEEEEECCS
T ss_pred cCcccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCeEEEEecCC
Confidence 34444667789999997653 49999999999999999999999999865421111 11234444443221
Q ss_pred -----------hh-------HHHH-hhhc-CccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhh--HHHhhhh
Q 004092 205 -----------RE-------KASF-VNWL-NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR--ARNYASS 262 (774)
Q Consensus 205 -----------~~-------l~~~-i~~~-~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~--~~k~~~~ 262 (774)
.. +... ++.. +||+||+|.... ..+..++.. ..++|+|+++|+...... .......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~-~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~~~~~ 169 (438)
T 3c48_A 92 PYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLS-GQVGWLLRD-LWRIPLIHTAHTLAAVKNSYRDDSDTP 169 (438)
T ss_dssp CSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHH-HHHHHHHHH-HHTCCEEEECSSCHHHHSCC----CCH
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccH-HHHHHHHHH-HcCCCEEEEecCCcccccccccccCCc
Confidence 00 1111 2222 599999998654 233333322 346899999997432210 0000000
Q ss_pred hhhHHHHHHHHHHHhccEEEccCCcchhh---cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEE
Q 004092 263 GQLELLNDWKKVFNRATVVVFPDYVLPMM---YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAI 339 (774)
Q Consensus 263 ~~~~li~~~~~~~~~a~~vv~ps~~~~~i---~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~ 339 (774)
.........+..+..++.+++.+...... ..+++..++.+|| +|+|...+...........+++++++++.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~-ngvd~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 248 (438)
T 3c48_A 170 ESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVS-PGADVELYSPGNDRATERSRRELGIPLHTKVVAF 248 (438)
T ss_dssp HHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECC-CCCCTTTSCCC----CHHHHHHTTCCSSSEEEEE
T ss_pred chHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEec-CCccccccCCcccchhhhhHHhcCCCCCCcEEEE
Confidence 00001112234566788887776653222 1345667899999 4888744433322223458899999989999999
Q ss_pred EecccccccccccHHHHHHHHHHchhhcc--cCCCCCCCeEEEEEeC-CCCCchHHHHHHHHHHcCCCCccEEEccCc--
Q 004092 340 VGTQFMYRGLWLEHALILRALLPLFSEVS--VENESNSPIKVMILSG-DSTSNYSVVIEAIAHNLHYPLGVVKHMAAE-- 414 (774)
Q Consensus 340 vGsrl~~~KgiKg~~lLLeA~~~L~~~~p--~~~~~~~~v~LvIvGG-~~~e~Y~~~L~~la~~lgL~~~~V~flG~~-- 414 (774)
+| ++.+. ||++.+++|+..+.+++| + ++|+|+|+ .....+.+.++++++++++.+ +|.|+|++
T Consensus 249 ~G-~~~~~---Kg~~~li~a~~~l~~~~p~~~-------~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~-~v~~~g~~~~ 316 (438)
T 3c48_A 249 VG-RLQPF---KGPQVLIKAVAALFDRDPDRN-------LRVIICGGPSGPNATPDTYRHMAEELGVEK-RIRFLDPRPP 316 (438)
T ss_dssp ES-CBSGG---GCHHHHHHHHHHHHHHCTTCS-------EEEEEECCBC------CHHHHHHHHTTCTT-TEEEECCCCH
T ss_pred Ee-eeccc---CCHHHHHHHHHHHHhhCCCcc-------eEEEEEeCCCCCCcHHHHHHHHHHHcCCCC-cEEEcCCCCh
Confidence 99 88887 999999999999998876 5 99999994 222245578899999999988 99999988
Q ss_pred ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCC
Q 004092 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKI 494 (774)
Q Consensus 415 ~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~ 494 (774)
+++..+|+.||++|+||..| |||++++|||+||+|||+++.+++.|++.++.+|++++++|+++++++|.++++|
T Consensus 317 ~~~~~~~~~adv~v~ps~~e--~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~--- 391 (438)
T 3c48_A 317 SELVAVYRAADIVAVPSFNE--SFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDD--- 391 (438)
T ss_dssp HHHHHHHHHCSEEEECCSCC--SSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhCCEEEECcccc--CCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC---
Confidence 88999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCC
Q 004092 495 SPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSE 534 (774)
Q Consensus 495 ~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~~~~~ 534 (774)
++.+++|++++++.+++|+|+.++++|.++|+++++.+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 392 DETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENV 431 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999997799999999999999999876543
No 3
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.7e-36 Score=331.73 Aligned_cols=358 Identities=13% Similarity=0.131 Sum_probs=279.2
Q ss_pred CCCeEEEEecCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc--hhhhhhcCccEEEcccc---------hhHHH
Q 004092 143 RKPQLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRA--HEVWRNIGVPVAILQTG---------REKAS 209 (774)
Q Consensus 143 rk~rialV~~~L~--~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~--~~~~~~~gi~i~~l~~~---------~~l~~ 209 (774)
+++||++|.+.+. .||.+.++.++++.| .||+|+|++...... .......++++..++.. ..+..
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPTPTTAHAMAE 80 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSSCCSCHHHHHHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEccccccccchhhHHHHHH
Confidence 5789999998665 799999999999999 699999999877554 33334556666655432 34566
Q ss_pred HhhhcCccEEEEcCCchhHHHHHHHhCCCCCCC-EEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc
Q 004092 210 FVNWLNYDGILVNSLEAKVVISNIMQEPFKSLP-LVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (774)
Q Consensus 210 ~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ip-vI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~ 288 (774)
+++..+||+||+|+......+..++. ..++| +|+++|+........ ...-...+..+..++.+++.+...
T Consensus 81 ~~~~~~~Dvv~~~~~~~~~~~~~~~~--~~~~~~~i~~~h~~~~~~~~~-------~~~~~~~~~~~~~~d~ii~~s~~~ 151 (394)
T 3okp_A 81 IIREREIDNVWFGAAAPLALMAGTAK--QAGASKVIASTHGHEVGWSML-------PGSRQSLRKIGTEVDVLTYISQYT 151 (394)
T ss_dssp HHHHTTCSEEEESSCTTGGGGHHHHH--HTTCSEEEEECCSTHHHHTTS-------HHHHHHHHHHHHHCSEEEESCHHH
T ss_pred HHHhcCCCEEEECCcchHHHHHHHHH--hcCCCcEEEEeccchhhhhhc-------chhhHHHHHHHHhCCEEEEcCHHH
Confidence 77888999999998766434444432 23465 899999754321111 111112344556778777776653
Q ss_pred hhh-cc-cCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhh
Q 004092 289 PMM-YS-AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (774)
Q Consensus 289 ~~i-~~-~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~ 366 (774)
... .. .....++.+|| +|+|...+.......+..++++++++++.++++++| ++.+. ||++.+++|+..+.++
T Consensus 152 ~~~~~~~~~~~~~~~vi~-ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-~~~~~---Kg~~~li~a~~~l~~~ 226 (394)
T 3okp_A 152 LRRFKSAFGSHPTFEHLP-SGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNS-RLVPR---KGQDSLIKAMPQVIAA 226 (394)
T ss_dssp HHHHHHHHCSSSEEEECC-CCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEES-CSCGG---GCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEec-CCcCHHHcCCCCchhhHHHHHhcCCCcCceEEEEEe-ccccc---cCHHHHHHHHHHHHhh
Confidence 222 11 22346889999 488875444434444778899999999989999999 78888 9999999999999998
Q ss_pred cccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCcc-------CcC
Q 004092 367 VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL-------EEQ 436 (774)
Q Consensus 367 ~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~-------E~q 436 (774)
+|+ ++|+|+| |+.. +.+++++ .++.+ +|.|+|++ +++..+|+.||++|+||.. |
T Consensus 227 ~~~-------~~l~i~G~g~~~----~~l~~~~--~~~~~-~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e-- 290 (394)
T 3okp_A 227 RPD-------AQLLIVGSGRYE----STLRRLA--TDVSQ-NVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE-- 290 (394)
T ss_dssp STT-------CEEEEECCCTTH----HHHHHHT--GGGGG-GEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCC--
T ss_pred CCC-------eEEEEEcCchHH----HHHHHHH--hcccC-eEEEcCCCCHHHHHHHHHhCCEEEecCcccccccccc--
Confidence 888 9999999 7654 7777777 47777 89999988 8999999999999999998 7
Q ss_pred CccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hcCHH
Q 004092 437 TFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-NLMAL 515 (774)
Q Consensus 437 Gfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak-~fs~~ 515 (774)
|+|++++|||+||+|||+|+.++..|++.++ +|++++++|+++++++|.++++| ++.+++|++++++.++ +|+|+
T Consensus 291 ~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~ 366 (394)
T 3okp_A 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDD---PIRRAAMGAAGRAHVEAEWSWE 366 (394)
T ss_dssp SSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTBHH
T ss_pred ccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHH
Confidence 8999999999999999999999999999999 99999999999999999999999 9999999999999995 69999
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q 004092 516 ETIEGYAMLLENVLKLPSEVA 536 (774)
Q Consensus 516 ~~a~~y~~L~e~ll~~~~~~~ 536 (774)
.++++|.++|+++........
T Consensus 367 ~~~~~~~~~~~~~~r~~~~~~ 387 (394)
T 3okp_A 367 IMGERLTNILQSEPRKLAAAL 387 (394)
T ss_dssp HHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHhccCcchhh
Confidence 999999999999865544433
No 4
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=4.7e-36 Score=331.89 Aligned_cols=364 Identities=15% Similarity=0.155 Sum_probs=264.7
Q ss_pred cccccCCCCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcc-----------
Q 004092 134 HRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQ----------- 202 (774)
Q Consensus 134 ~~~~~r~~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~----------- 202 (774)
|.+.+.+--|++++...... ..||++.++..+++.|.++||+|+|++........ ....++.+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~p-~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 82 (394)
T 2jjm_A 5 GSSHHHHHHMKLKIGITCYP-SVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN-KVYPNIYFHEVTVNQYSVFQYPP 82 (394)
T ss_dssp ----------CCEEEEECCC---CHHHHHHHHHHHHHHHTTCEEEEECSSCC-----CCCTTEEEECCCCC----CCSCC
T ss_pred cccccchhhheeeeehhcCC-CCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc-ccCCceEEEeccccccccccccc
Confidence 56666777788887776654 48999999999999999999999999975421110 011122222111
Q ss_pred ----cchhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCC-CCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHh
Q 004092 203 ----TGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPF-KSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNR 277 (774)
Q Consensus 203 ----~~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~-~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~ 277 (774)
....+...++..+||+||+|+.........+..... .++|+|+++|+..... . ... .......+..+..
T Consensus 83 ~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-~---~~~--~~~~~~~~~~~~~ 156 (394)
T 2jjm_A 83 YDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITV-L---GSD--PSLNNLIRFGIEQ 156 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHT-T---TTC--TTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccc-c---CCC--HHHHHHHHHHHhh
Confidence 112345556778999999998765323333332212 2589999999632210 0 000 0011123345667
Q ss_pred ccEEEccCCcchhh-cccC-CCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHH
Q 004092 278 ATVVVFPDYVLPMM-YSAF-DAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (774)
Q Consensus 278 a~~vv~ps~~~~~i-~~~v-~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~l 355 (774)
++.+++.+...... .... ...++.+||+ |+|...+. ......++++++++++.++++++| ++.+. ||++.
T Consensus 157 ad~ii~~s~~~~~~~~~~~~~~~~~~vi~n-gv~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~G-~~~~~---Kg~~~ 228 (394)
T 2jjm_A 157 SDVVTAVSHSLINETHELVKPNKDIQTVYN-FIDERVYF---KRDMTQLKKEYGISESEKILIHIS-NFRKV---KRVQD 228 (394)
T ss_dssp SSEEEESCHHHHHHHHHHTCCSSCEEECCC-CCCTTTCC---CCCCHHHHHHTTCC---CEEEEEC-CCCGG---GTHHH
T ss_pred CCEEEECCHHHHHHHHHhhCCcccEEEecC-CccHHhcC---CcchHHHHHHcCCCCCCeEEEEee-ccccc---cCHHH
Confidence 88777776663222 1111 2468999994 78874332 223456788899988888999999 88887 99999
Q ss_pred HHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccC
Q 004092 356 ILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLE 434 (774)
Q Consensus 356 LLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E 434 (774)
+++|+..+.++ ++ ++|+|+| |+.. +.++++++++++.+ +|.|+|+.+++..+|+.||++|+||..|
T Consensus 229 li~a~~~l~~~-~~-------~~l~i~G~g~~~----~~l~~~~~~~~l~~-~v~~~g~~~~~~~~~~~adv~v~ps~~e 295 (394)
T 2jjm_A 229 VVQAFAKIVTE-VD-------AKLLLVGDGPEF----CTILQLVKNLHIED-RVLFLGKQDNVAELLAMSDLMLLLSEKE 295 (394)
T ss_dssp HHHHHHHHHHS-SC-------CEEEEECCCTTH----HHHHHHHHTTTCGG-GBCCCBSCSCTHHHHHTCSEEEECCSCC
T ss_pred HHHHHHHHHhh-CC-------CEEEEECCchHH----HHHHHHHHHcCCCC-eEEEeCchhhHHHHHHhCCEEEeccccC
Confidence 99999999876 45 8999999 7754 78889999999988 9999999999999999999999999988
Q ss_pred cCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcC
Q 004092 435 EQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLM 513 (774)
Q Consensus 435 ~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs 513 (774)
|||++++|||+||+|||+|+.+++.|++.++.+|++++++|+++++++|.++++| ++.+++|++++++.+ ++|+
T Consensus 296 --~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s 370 (394)
T 2jjm_A 296 --SFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD---EELHRNMGERARESVYEQFR 370 (394)
T ss_dssp --SCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHSC
T ss_pred --CCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999999999999999999 999999999999999 7899
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 004092 514 ALETIEGYAMLLENVLKL 531 (774)
Q Consensus 514 ~~~~a~~y~~L~e~ll~~ 531 (774)
|+.++++|.++|+++++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~ 388 (394)
T 2jjm_A 371 SEKIVSQYETIYYDVLRD 388 (394)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998764
No 5
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=7.3e-36 Score=332.76 Aligned_cols=354 Identities=14% Similarity=0.205 Sum_probs=267.3
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhh-hh-----hcCccEEEccc-----c----h
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-WR-----NIGVPVAILQT-----G----R 205 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~-~~-----~~gi~i~~l~~-----~----~ 205 (774)
.++++||+++.+.+..||++.++.++++.|.+.||+|++++......... .. ..+.+...+.. . .
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNR 116 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHH
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeecccccccccHHHHHHHHHHHH
Confidence 35678999999999899999999999999999999999998765431110 00 01111111110 0 1
Q ss_pred hHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccC
Q 004092 206 EKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPD 285 (774)
Q Consensus 206 ~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps 285 (774)
.+...++..+||+||+|++... .+..++ . ..+|+|++.|+...... ..........+..++.+++..
T Consensus 117 ~~~~~l~~~~~Dvv~~~~~~~~-~~~~~~-~--~~~p~v~~~h~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~ 183 (416)
T 2x6q_A 117 ENSKFIDLSSFDYVLVHDPQPA-ALIEFY-E--KKSPWLWRCHIDLSSPN---------REFWEFLRRFVEKYDRYIFHL 183 (416)
T ss_dssp HHHHSSCGGGSSEEEEESSTTG-GGGGGS-C--CCSCEEEECCSCCSSCC---------HHHHHHHHHHHTTSSEEEESS
T ss_pred HHHHHHhhcCCCEEEEeccchh-hHHHHH-H--hcCCEEEEEccccCCcc---------HHHHHHHHHHHHhCCEEEEec
Confidence 1223345569999999997663 222222 2 23899999997432110 001111222344555554332
Q ss_pred CcchhhcccCCCCCEEEeCCCCCCcccccc--cCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHc
Q 004092 286 YVLPMMYSAFDAGNYYVIPGSPAKAWEADT--NMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPL 363 (774)
Q Consensus 286 ~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~--~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L 363 (774)
+. .....+...++.+||+ |+|...+.. .....+..++++++++++.++++++| ++.+. ||++.+++|+..+
T Consensus 184 s~--~~~~~~~~~~~~vi~n-gvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~~l 256 (416)
T 2x6q_A 184 PE--YVQPELDRNKAVIMPP-SIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVS-RFDPW---KGIFDVIEIYRKV 256 (416)
T ss_dssp GG--GSCTTSCTTTEEECCC-CBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEEC-CCCTT---SCHHHHHHHHHHH
T ss_pred hH--HHHhhCCccceEEeCC-CCChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEe-ccccc---cCHHHHHHHHHHH
Confidence 22 1122344478899994 788644332 22223567889999999999999999 88888 9999999999999
Q ss_pred hhhcccCCCCCCCeEEEEEe-CCCC-CchHHHHHHHHHHcCCCCccEEEccCcc-----cHHHHHHHcCEEEEcCccCcC
Q 004092 364 FSEVSVENESNSPIKVMILS-GDST-SNYSVVIEAIAHNLHYPLGVVKHMAAEG-----DVDSVLNTADVVIYGSFLEEQ 436 (774)
Q Consensus 364 ~~~~p~~~~~~~~v~LvIvG-G~~~-e~Y~~~L~~la~~lgL~~~~V~flG~~~-----dl~~~l~aaDI~V~PS~~E~q 436 (774)
.+++|+ ++|+|+| |+.. ..+.+.++++++++++.+ +|.|+|+.. ++..+|++||++|+||..|
T Consensus 257 ~~~~~~-------~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~-~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E-- 326 (416)
T 2x6q_A 257 KEKIPG-------VQLLLVGVMAHDDPEGWIYFEKTLRKIGEDY-DVKVLTNLIGVHAREVNAFQRASDVILQMSIRE-- 326 (416)
T ss_dssp HHHCTT-------CEEEEEECCCTTCHHHHHHHHHHHHHHTTCT-TEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSC--
T ss_pred HHhCCC-------eEEEEEecCcccchhHHHHHHHHHHHhCCCC-cEEEecccCCCCHHHHHHHHHhCCEEEECCCcC--
Confidence 988888 9999999 7653 345577899999999988 899999653 8999999999999999998
Q ss_pred CccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHH
Q 004092 437 TFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMAL 515 (774)
Q Consensus 437 Gfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~fs~~ 515 (774)
|||++++||||||+|||+|+.+|++|++.++.+|++++ |+++++++|.++++| ++.+++|+++|++.+ ++|+|+
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~fs~~ 401 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLLKH---PEVSKEMGAKAKERVRKNFIIT 401 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHTBHH
T ss_pred CCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHcCHH
Confidence 89999999999999999999999999999999999998 999999999999999 999999999999999 579999
Q ss_pred HHHHHHHHHHHHHh
Q 004092 516 ETIEGYAMLLENVL 529 (774)
Q Consensus 516 ~~a~~y~~L~e~ll 529 (774)
.++++|.++|++++
T Consensus 402 ~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 402 KHMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=5.5e-36 Score=342.47 Aligned_cols=371 Identities=14% Similarity=0.128 Sum_probs=278.9
Q ss_pred CCeEEEEecCC-------------CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch-hh----hh----hcCccEEEc
Q 004092 144 KPQLALVFPDL-------------LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH-EV----WR----NIGVPVAIL 201 (774)
Q Consensus 144 k~rialV~~~L-------------~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~-~~----~~----~~gi~i~~l 201 (774)
++||++|.+.. ..||+++++.++++.|.+.||+|+|++....... .. .. ..++++..+
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 86 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRI 86 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEE
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEe
Confidence 47999999754 4699999999999999999999999997653211 11 11 235665554
Q ss_pred ccc------------------hhHHHHhhh--cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHh--
Q 004092 202 QTG------------------REKASFVNW--LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNY-- 259 (774)
Q Consensus 202 ~~~------------------~~l~~~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~-- 259 (774)
+.. ..+..+++. .+||+||+|+... ..+..++.. ..++|+|+++|+...... ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~-~~~~~~~~~-~~~~p~v~~~H~~~~~~~-~~~~~ 163 (499)
T 2r60_A 87 PFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDG-GLAGVLLKN-IKGLPFTFTGHSLGAQKM-EKLNV 163 (499)
T ss_dssp CCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHH-HHHHHHHHH-HHCCCEEEECSSCHHHHH-HTTCC
T ss_pred cCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcc-hHHHHHHHH-hcCCcEEEEccCcccccc-hhhcc
Confidence 421 123334554 4899999998654 244443332 456899999998432211 000
Q ss_pred -------hhhhhh--HHHHHHHHHHHhccEEEccCCcchh-hcc----c-C----CCCCEEEeCCCCCCcccccccCchh
Q 004092 260 -------ASSGQL--ELLNDWKKVFNRATVVVFPDYVLPM-MYS----A-F----DAGNYYVIPGSPAKAWEADTNMDLY 320 (774)
Q Consensus 260 -------~~~~~~--~li~~~~~~~~~a~~vv~ps~~~~~-i~~----~-v----~~~ki~vIpg~gvd~~~~~~~~~~~ 320 (774)
...... ......+..+..++.+++.+..... +.. + + ...++.+|| +|+|...+.......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~-ngvd~~~~~~~~~~~ 242 (499)
T 2r60_A 164 NTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIP-PGVNTRVFDGEYGDK 242 (499)
T ss_dssp CSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECC-CCBCTTTSSSCCCHH
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEEC-CCcChhhcCccchhh
Confidence 000000 1111234466778888887766332 211 2 3 557899999 488875444332222
Q ss_pred -hHHHHHHhC-----CCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeC-CCC------
Q 004092 321 -NDTVRVKMG-----FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSG-DST------ 387 (774)
Q Consensus 321 -k~~lR~~lg-----l~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG-~~~------ 387 (774)
+..+|+++| ++++.++++++| ++.+. ||++.+++|+..+.+++|+ .++++|+|+ +..
T Consensus 243 ~~~~~r~~~~~~~~~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~~l~~~~~~------~~~l~i~G~~~~~~~~y~~ 312 (499)
T 2r60_A 243 IKAKITKYLERDLGSERMELPAIIASS-RLDQK---KNHYGLVEAYVQNKELQDK------ANLVLTLRGIENPFEDYSR 312 (499)
T ss_dssp HHHHHHHHHHHHSCGGGTTSCEEEECS-CCCGG---GCHHHHHHHHHTCHHHHHH------CEEEEEESSCSBTTTBCTT
T ss_pred hHHHHHHHhcccccccCCCCcEEEEee-cCccc---cCHHHHHHHHHHHHHhCCC------ceEEEEECCCCCccccccc
Confidence 467888888 788888999999 88888 9999999999999887665 258999994 211
Q ss_pred -----CchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHc----CEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 388 -----SNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTA----DVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 388 -----e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aa----DI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
.+|.+.++++++++++.+ +|.|+|++ +++..+|++| |++|+||..| |||++++||||||+|||+|+
T Consensus 313 l~~~~~~y~~~l~~~~~~~~l~~-~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~E--g~~~~~lEAma~G~PvI~s~ 389 (499)
T 2r60_A 313 AGQEEKEILGKIIELIDNNDCRG-KVSMFPLNSQQELAGCYAYLASKGSVFALTSFYE--PFGLAPVEAMASGLPAVVTR 389 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCBT-TEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCB--CCCSHHHHHHHTTCCEEEES
T ss_pred ccccchHHHHHHHHHHHhcCCCc-eEEECCCCCHHHHHHHHHhcCcCCCEEEECcccC--CCCcHHHHHHHcCCCEEEec
Confidence 123789999999999998 99999987 8999999999 9999999998 89999999999999999999
Q ss_pred CcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhcCCCC
Q 004092 457 LSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKN-LMALETIEGYAMLLENVLKLPSE 534 (774)
Q Consensus 457 ~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~-fs~~~~a~~y~~L~e~ll~~~~~ 534 (774)
.+|+.|++.++.+|++++++|+++++++|.++++| ++.+++|+++|++.+++ |+|+.++++|.++|++++.....
T Consensus 390 ~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~~ 465 (499)
T 2r60_A 390 NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFES---EETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDE 465 (499)
T ss_dssp SBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999 99999999999999954 99999999999999999876543
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.1e-34 Score=330.10 Aligned_cols=360 Identities=14% Similarity=0.097 Sum_probs=262.0
Q ss_pred CeEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh---------------------hhcCccEE
Q 004092 145 PQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW---------------------RNIGVPVA 199 (774)
Q Consensus 145 ~rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~---------------------~~~gi~i~ 199 (774)
+||++|.+.+ ..||++.++.++++.|.++||+|+|++.......... ...++++.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 4789998866 4699999999999999999999999997653211110 01355554
Q ss_pred Eccc----------c-------------------hhHHHHhhh----cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEE
Q 004092 200 ILQT----------G-------------------REKASFVNW----LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 200 ~l~~----------~-------------------~~l~~~i~~----~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
.++. + ..+..+++. .+||+||+|++... .+..++..+..++|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~-~~~~~~~~~~~~~p~v~t 159 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAG-LAPAYLAARGRPAKSVFT 159 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGT-THHHHHHHTTCSSEEEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchh-HHHHHHhhccCCCCEEEE
Confidence 4321 0 012223332 68999999987653 444444313567999999
Q ss_pred EcCchhhh--h---HHH------hhhh-h--hhHHHHHHHHHHHhccEEEccCCcchhhcc----cC--------CC--C
Q 004092 247 IHEGTLAT--R---ARN------YASS-G--QLELLNDWKKVFNRATVVVFPDYVLPMMYS----AF--------DA--G 298 (774)
Q Consensus 247 iHg~~l~~--~---~~k------~~~~-~--~~~li~~~~~~~~~a~~vv~ps~~~~~i~~----~v--------~~--~ 298 (774)
+|+..... . +.. .... . ........+..+..++.+++.+........ +. .. .
T Consensus 160 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (485)
T 2qzs_A 160 VHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREG 239 (485)
T ss_dssp ESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTT
T ss_pred ecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhccccCcchHHHHHhhccCC
Confidence 99842110 0 000 0000 0 000011233455677877777655322211 11 12 6
Q ss_pred CEEEeCCCCCCcccccccCch----------------hhHHHHHHhCCCC--CCEEEEEEecccccccccccHHHHHHHH
Q 004092 299 NYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILRAL 360 (774)
Q Consensus 299 ki~vIpg~gvd~~~~~~~~~~----------------~k~~lR~~lgl~~--~~~vIl~vGsrl~~~KgiKg~~lLLeA~ 360 (774)
++.+||+ |+|...+.+.... .+..+++++++++ +.++++++| ++.+. ||++.+++|+
T Consensus 240 ~~~vi~n-gvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~ 314 (485)
T 2qzs_A 240 RLSGVLN-GVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVS-RLTSQ---KGLDLVLEAL 314 (485)
T ss_dssp CEEECCC-CCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEE-EESGG---GCHHHHHHHH
T ss_pred ceEEEec-CCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEec-cCccc---cCHHHHHHHH
Confidence 8999994 8887544332211 2467888999986 778999999 88888 9999999999
Q ss_pred HHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEE-EccCcc-cHHHHHHHcCEEEEcCccCcCC
Q 004092 361 LPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEG-DVDSVLNTADVVIYGSFLEEQT 437 (774)
Q Consensus 361 ~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~-flG~~~-dl~~~l~aaDI~V~PS~~E~qG 437 (774)
+.+.+. + ++|+|+| |+. .+.+.+++++++++ + +|. +.|+.. ++..+|++||++|+||..| |
T Consensus 315 ~~l~~~--~-------~~l~ivG~g~~--~~~~~l~~~~~~~~--~-~v~~~~g~~~~~~~~~~~~adv~v~pS~~E--~ 378 (485)
T 2qzs_A 315 PGLLEQ--G-------GQLALLGAGDP--VLQEGFLAAAAEYP--G-QVGVQIGYHEAFSHRIMGGADVILVPSRFE--P 378 (485)
T ss_dssp HHHHHT--T-------CEEEEEEEECH--HHHHHHHHHHHHST--T-TEEEEESCCHHHHHHHHHHCSEEEECCSCC--S
T ss_pred HHHhhC--C-------cEEEEEeCCch--HHHHHHHHHHHhCC--C-cEEEeCCCCHHHHHHHHHhCCEEEECCccC--C
Confidence 998763 5 8999999 752 35688999999775 4 685 899874 4589999999999999998 8
Q ss_pred ccHHHHHHHHcCCCEEEcCCcccccccccC---------ccEEEEcCCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHH
Q 004092 438 FPEILVKALCFRKPIIAPDLSNIRKYVDDR---------VNGYLFPKENIKALTHIILQVI---TNGKISPFARNIASIG 505 (774)
Q Consensus 438 fp~~llEAMA~G~PVIatd~ggi~EiV~dg---------~~G~Lv~~~d~e~La~aI~~Ll---~d~~~~~~r~~m~~~a 505 (774)
||++++||||||+|||+|+.+|+.|++.++ .+|++++++|+++|+++|.+++ +| ++.+++|++++
T Consensus 379 ~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~---~~~~~~~~~~~ 455 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSR---PSLWRFVQRQA 455 (485)
T ss_dssp SCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 999999999999999999999999999998 8999999999999999999999 68 88899999998
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhcC
Q 004092 506 RRSVKNLMALETIEGYAMLLENVLKL 531 (774)
Q Consensus 506 r~~ak~fs~~~~a~~y~~L~e~ll~~ 531 (774)
++ ++|+|+.++++|.++|++++..
T Consensus 456 ~~--~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 456 MA--MDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp HH--CCCCHHHHHHHHHHHHHHHC--
T ss_pred Hh--hcCCHHHHHHHHHHHHHHhhhh
Confidence 74 7899999999999999998543
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.5e-34 Score=328.89 Aligned_cols=362 Identities=14% Similarity=0.092 Sum_probs=263.3
Q ss_pred CeEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh----------------------hhcCccE
Q 004092 145 PQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW----------------------RNIGVPV 198 (774)
Q Consensus 145 ~rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~----------------------~~~gi~i 198 (774)
+||++|.+.+ ..||++.++.++++.|.++||+|+|++.......... ...++++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 80 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecCCeEEEEEEEecCceE
Confidence 4789998866 3699999999999999999999999997653211110 0235555
Q ss_pred EEcccc-----------------------------hhHHHHh----hhcCccEEEEcCCchhHHHHHHHhCC-CCCCCEE
Q 004092 199 AILQTG-----------------------------REKASFV----NWLNYDGILVNSLEAKVVISNIMQEP-FKSLPLV 244 (774)
Q Consensus 199 ~~l~~~-----------------------------~~l~~~i----~~~~~DIIhvhs~~~~~~l~~Ll~~~-~~~ipvI 244 (774)
..++.. ..+..++ +..+||+||+|++... .+..++... ..++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~-~~~~~~~~~~~~~~p~v 159 (485)
T 1rzu_A 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAA-MTPVYMRYAETPEIPSL 159 (485)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHT-THHHHHHHSSSCCCCEE
T ss_pred EEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchh-HHHHHHhhcccCCCCEE
Confidence 543210 0011223 3568999999986542 344443321 3679999
Q ss_pred EEEcCchhhhh-----HH------Hhhhh-h--hhHHHHHHHHHHHhccEEEccCCcchhhc-c---c--------CCCC
Q 004092 245 WTIHEGTLATR-----AR------NYASS-G--QLELLNDWKKVFNRATVVVFPDYVLPMMY-S---A--------FDAG 298 (774)
Q Consensus 245 ~tiHg~~l~~~-----~~------k~~~~-~--~~~li~~~~~~~~~a~~vv~ps~~~~~i~-~---~--------v~~~ 298 (774)
+|+|+...... +. ..... . ........+..+..++.+++.+....... . + ....
T Consensus 160 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (485)
T 1rzu_A 160 LTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAH 239 (485)
T ss_dssp EEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGG
T ss_pred EEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhccccCcchHHHHHhhcC
Confidence 99998421100 00 00000 0 00001123445667887777766632221 1 1 2457
Q ss_pred CEEEeCCCCCCcccccccCch----------------hhHHHHHHhCCCCC-CEEEEEEecccccccccccHHHHHHHHH
Q 004092 299 NYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKPD-DLVIAIVGTQFMYRGLWLEHALILRALL 361 (774)
Q Consensus 299 ki~vIpg~gvd~~~~~~~~~~----------------~k~~lR~~lgl~~~-~~vIl~vGsrl~~~KgiKg~~lLLeA~~ 361 (774)
++.+||+ |+|...+.+.... .+..+++++|++++ +++++++| ++.+. ||++.+++|+.
T Consensus 240 ~~~vi~n-gvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~ 314 (485)
T 1rzu_A 240 VLHGIVN-GIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVIS-RLTWQ---KGIDLMAEAVD 314 (485)
T ss_dssp GEEECCC-CBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEES-CBSTT---TTHHHHHTTHH
T ss_pred CceEEcC-CCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEc-cCccc---cCHHHHHHHHH
Confidence 8999994 8887544332211 14678889999875 67999999 88888 99999999999
Q ss_pred HchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEE-EccCccc-HHHHHHHcCEEEEcCccCcCCc
Q 004092 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEGD-VDSVLNTADVVIYGSFLEEQTF 438 (774)
Q Consensus 362 ~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~-flG~~~d-l~~~l~aaDI~V~PS~~E~qGf 438 (774)
.+.+. + ++|+|+| |+. .|.+.+++++++++ + +|. +.|+..+ +..+|++||++|+||..| ||
T Consensus 315 ~l~~~--~-------~~l~ivG~g~~--~~~~~l~~~~~~~~--~-~v~~~~g~~~~~~~~~~~~adv~v~pS~~E--~~ 378 (485)
T 1rzu_A 315 EIVSL--G-------GRLVVLGAGDV--ALEGALLAAASRHH--G-RVGVAIGYNEPLSHLMQAGCDAIIIPSRFE--PC 378 (485)
T ss_dssp HHHHT--T-------CEEEEEECBCH--HHHHHHHHHHHHTT--T-TEEEEESCCHHHHHHHHHHCSEEEECCSCC--SS
T ss_pred HHHhc--C-------ceEEEEeCCch--HHHHHHHHHHHhCC--C-cEEEecCCCHHHHHHHHhcCCEEEECcccC--CC
Confidence 99763 5 9999999 642 35688999999775 4 687 8898744 589999999999999998 89
Q ss_pred cHHHHHHHHcCCCEEEcCCcccccccccC---------ccEEEEcCCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHH
Q 004092 439 PEILVKALCFRKPIIAPDLSNIRKYVDDR---------VNGYLFPKENIKALTHIILQVI---TNGKISPFARNIASIGR 506 (774)
Q Consensus 439 p~~llEAMA~G~PVIatd~ggi~EiV~dg---------~~G~Lv~~~d~e~La~aI~~Ll---~d~~~~~~r~~m~~~ar 506 (774)
|++++||||||+|||+|+.+|++|++.++ .+|++++++|+++|+++|.+++ +| ++.+++|+++++
T Consensus 379 ~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~---~~~~~~~~~~~~ 455 (485)
T 1rzu_A 379 GLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHD---PKLWTQMQKLGM 455 (485)
T ss_dssp CSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 99999999999999999999999999998 8999999999999999999999 78 889999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCC
Q 004092 507 RSVKNLMALETIEGYAMLLENVLKLPS 533 (774)
Q Consensus 507 ~~ak~fs~~~~a~~y~~L~e~ll~~~~ 533 (774)
+ ++|+|+.++++|.++|+++++.+.
T Consensus 456 ~--~~fs~~~~~~~~~~~y~~~~~~~~ 480 (485)
T 1rzu_A 456 K--SDVSWEKSAGLYAALYSQLISKGH 480 (485)
T ss_dssp T--CCCBHHHHHHHHHHHHHHHTC---
T ss_pred H--HhCChHHHHHHHHHHHHHhhCCCC
Confidence 5 789999999999999999876543
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=8.9e-35 Score=317.75 Aligned_cols=350 Identities=14% Similarity=0.099 Sum_probs=260.8
Q ss_pred CeEEEEecC-CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc------------hhHHHHh
Q 004092 145 PQLALVFPD-LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------------REKASFV 211 (774)
Q Consensus 145 ~rialV~~~-L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~------------~~l~~~i 211 (774)
+||+++.+. ...||.++++.++++.|.++||+|+|++....... ..++++..++.. ..+...+
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~i 76 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC----PKAFELIQVPVKSHTNHGRNAEYYAWVQNHL 76 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC----CTTCEEEECCCCCSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC----CCCcEEEEEccCcccchhhHHHHHHHHHHHH
Confidence 468888876 35699999999999999999999999997632211 124455544432 1234456
Q ss_pred hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHH--hccEEEccCCcch
Q 004092 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFN--RATVVVFPDYVLP 289 (774)
Q Consensus 212 ~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~--~a~~vv~ps~~~~ 289 (774)
+..+||+||+|+.... ... ........+|.+++.|+... ..... ........+..+. .++.+++.+....
T Consensus 77 ~~~~~Dvv~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 148 (374)
T 2iw1_A 77 KEHPADRVVGFNKMPG-LDV-YFAADVCYAEKVAQEKGFLY-----RLTSR-YRHYAAFERATFEQGKSTKLMMLTDKQI 148 (374)
T ss_dssp HHSCCSEEEESSCCTT-CSE-EECCSCCHHHHHHHHCCHHH-----HTSHH-HHHHHHHHHHHHSTTCCCEEEESCHHHH
T ss_pred hccCCCEEEEecCCCC-cee-eeccccccceeeeecccchh-----hhcHH-HHHHHHHHHHHhhccCCcEEEEcCHHHH
Confidence 6789999999876442 100 01111112233333342110 00000 0000111112222 4666666665522
Q ss_pred h-h--cccCCCCCEEEeCCCCCCcccccccCchh-hHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchh
Q 004092 290 M-M--YSAFDAGNYYVIPGSPAKAWEADTNMDLY-NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (774)
Q Consensus 290 ~-i--~~~v~~~ki~vIpg~gvd~~~~~~~~~~~-k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~ 365 (774)
. . ..+++..++.+||+ |+|...+....... +..++++++++++.++++++| ++.+. ||++.+++|+..+.+
T Consensus 149 ~~~~~~~~~~~~~~~vi~n-gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~~ 223 (374)
T 2iw1_A 149 ADFQKHYQTEPERFQILPP-GIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVG-SDFGR---KGVDRSIEALASLPE 223 (374)
T ss_dssp HHHHHHHCCCGGGEEECCC-CCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEEC-SCTTT---TTHHHHHHHHHTSCH
T ss_pred HHHHHHhCCChhheEEecC-CcCHHhcCcccchhHHHHHHHHhCCCCCCeEEEEec-cchhh---cCHHHHHHHHHHhHh
Confidence 2 2 12455678999994 88875544433322 567899999999999999999 88887 999999999999987
Q ss_pred h-cccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHH
Q 004092 366 E-VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (774)
Q Consensus 366 ~-~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~ll 443 (774)
+ .++ ++|+|+| |+ . +.++++++++++.+ +|.|+|+.+++..+|+.||++|+||..| |||++++
T Consensus 224 ~~~~~-------~~l~i~G~g~-~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~ps~~e--~~~~~~~ 288 (374)
T 2iw1_A 224 SLRHN-------TLLFVVGQDK-P----RKFEALAEKLGVRS-NVHFFSGRNDVSELMAAADLLLHPAYQE--AAGIVLL 288 (374)
T ss_dssp HHHHT-------EEEEEESSSC-C----HHHHHHHHHHTCGG-GEEEESCCSCHHHHHHHCSEEEECCSCC--SSCHHHH
T ss_pred ccCCc-------eEEEEEcCCC-H----HHHHHHHHHcCCCC-cEEECCCcccHHHHHHhcCEEEeccccC--CcccHHH
Confidence 7 577 9999999 65 3 67889999999988 9999999999999999999999999998 8999999
Q ss_pred HHHHcCCCEEEcCCcccccccccCccEEEEc-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004092 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFP-KENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (774)
Q Consensus 444 EAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~-~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~ 522 (774)
|||+||+|||+|+.+|..|++.++.+|++++ ++|+++++++|.++++| ++.+++|++++++.+++++|..+++.+.
T Consensus 289 Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (374)
T 2iw1_A 289 EAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQ---SPLRMAWAENARHYADTQDLYSLPEKAA 365 (374)
T ss_dssp HHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999998 88999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHh
Q 004092 523 MLLENVL 529 (774)
Q Consensus 523 ~L~e~ll 529 (774)
++++..+
T Consensus 366 ~~l~~~l 372 (374)
T 2iw1_A 366 DIITGGL 372 (374)
T ss_dssp HHHHCC-
T ss_pred HHHHHhh
Confidence 9998754
No 10
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.5e-33 Score=311.40 Aligned_cols=350 Identities=15% Similarity=0.181 Sum_probs=258.2
Q ss_pred CCCCCeEEEEecCC--CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhhhhhcCccEEEcc---------c----c
Q 004092 141 GYRKPQLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAILQ---------T----G 204 (774)
Q Consensus 141 ~~rk~rialV~~~L--~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~-~~~~~~~gi~i~~l~---------~----~ 204 (774)
+.+++||+++.+.+ ..||.+.++..+++.|.+.||+|++++...... ...+...+..+..++ . .
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPATH 96 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCHHHH
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHHHH
Confidence 44568999999865 349999999999999999999999999866432 011100100111111 1 1
Q ss_pred hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEcc
Q 004092 205 REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFP 284 (774)
Q Consensus 205 ~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~p 284 (774)
..+..+++..+||+||+|+...... ..++.. ..++|+|+++|+............. ..+..+..++.+++.
T Consensus 97 ~~l~~~l~~~~~Dii~~~~~~~~~~-~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~-------~~~~~~~~~d~ii~~ 167 (406)
T 2gek_A 97 RKVKKWIAEGDFDVLHIHEPNAPSL-SMLALQ-AAEGPIVATFHTSTTKSLTLSVFQG-------ILRPYHEKIIGRIAV 167 (406)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSSH-HHHHHH-HEESSEEEEECCCCCSHHHHHHHHS-------TTHHHHTTCSEEEES
T ss_pred HHHHHHHHhcCCCEEEECCccchHH-HHHHHH-hcCCCEEEEEcCcchhhhhHHHHHH-------HHHHHHhhCCEEEEC
Confidence 3455667778999999998776423 333322 3468999999984322111111111 112445677777777
Q ss_pred CCcch-hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEeccc-ccccccccHHHHHHHHHH
Q 004092 285 DYVLP-MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQF-MYRGLWLEHALILRALLP 362 (774)
Q Consensus 285 s~~~~-~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl-~~~KgiKg~~lLLeA~~~ 362 (774)
+.... .....+...++ +|| +|+|...+..... ..+++.+.++++++| ++ .+. ||++.+++|+..
T Consensus 168 s~~~~~~~~~~~~~~~~-vi~-~~v~~~~~~~~~~--------~~~~~~~~~~i~~~G-~~~~~~---Kg~~~li~a~~~ 233 (406)
T 2gek_A 168 SDLARRWQMEALGSDAV-EIP-NGVDVASFADAPL--------LDGYPREGRTVLFLG-RYDEPR---KGMAVLLAALPK 233 (406)
T ss_dssp SHHHHHHHHHHHSSCEE-ECC-CCBCHHHHHTCCC--------CTTCSCSSCEEEEES-CTTSGG---GCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCcE-Eec-CCCChhhcCCCch--------hhhccCCCeEEEEEe-eeCccc---cCHHHHHHHHHH
Confidence 65532 22234455678 888 4777643322211 123344567999999 77 777 999999999999
Q ss_pred chhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCc-cCcCCc
Q 004092 363 LFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSF-LEEQTF 438 (774)
Q Consensus 363 L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~-~E~qGf 438 (774)
+.+++|+ ++|+|+| |+. +.++++++++ .+ +|.|+|++ +++..+|+.||++|+||. .| ||
T Consensus 234 l~~~~~~-------~~l~i~G~~~~-----~~l~~~~~~~--~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e--~~ 296 (406)
T 2gek_A 234 LVARFPD-------VEILIVGRGDE-----DELREQAGDL--AG-HLRFLGQVDDATKASAMRSADVYCAPHLGGE--SF 296 (406)
T ss_dssp HHTTSTT-------CEEEEESCSCH-----HHHHHHTGGG--GG-GEEECCSCCHHHHHHHHHHSSEEEECCCSCC--SS
T ss_pred HHHHCCC-------eEEEEEcCCcH-----HHHHHHHHhc--cC-cEEEEecCCHHHHHHHHHHCCEEEecCCCCC--CC
Confidence 9988888 9999999 653 5667777755 55 89999988 567999999999999996 77 89
Q ss_pred cHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Q 004092 439 PEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETI 518 (774)
Q Consensus 439 p~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a 518 (774)
|++++|||+||+|||+++.+++.|++.++.+|++++++|+++++++|.++++| ++.+.+|++++++.+++|+|+.++
T Consensus 297 ~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~s~~~~~ 373 (406)
T 2gek_A 297 GIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILED---DQLRAGYVARASERVHRYDWSVVS 373 (406)
T ss_dssp CHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHGGGGBHHHHH
T ss_pred chHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 004092 519 EGYAMLLENVLKLPS 533 (774)
Q Consensus 519 ~~y~~L~e~ll~~~~ 533 (774)
++|.++|+++++...
T Consensus 374 ~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 374 AQIMRVYETVSGAGI 388 (406)
T ss_dssp HHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999986543
No 11
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.9e-33 Score=312.69 Aligned_cols=344 Identities=13% Similarity=0.066 Sum_probs=257.8
Q ss_pred CeEEEEecCC-CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc-ch---------hhhhhcCccEEE-cccchhHHHHhh
Q 004092 145 PQLALVFPDL-LIDPQQLQMVTIAIALREIGYAIQVYSLEDGR-AH---------EVWRNIGVPVAI-LQTGREKASFVN 212 (774)
Q Consensus 145 ~rialV~~~L-~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~-~~---------~~~~~~gi~i~~-l~~~~~l~~~i~ 212 (774)
+||+++.+.. ..||.++++..+++.|.+. |+|+|++..... .. ....... .... ......+...++
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 78 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHVR-GLNEQGFYYSGLSEFID 78 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHHT-TCCSTTCCHHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCcccccccc-ccccccchHHHHHHHHH
Confidence 5788888755 4699999999999999999 999999875421 00 0000000 0000 011223456677
Q ss_pred hcCccEEEEcCCchhHHHHHHHhC--CC-CCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhcc--EEEccCCc
Q 004092 213 WLNYDGILVNSLEAKVVISNIMQE--PF-KSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRAT--VVVFPDYV 287 (774)
Q Consensus 213 ~~~~DIIhvhs~~~~~~l~~Ll~~--~~-~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~--~vv~ps~~ 287 (774)
..+||+||+|++.. .+..++.. .. ...+++...|....... +. .+..+..++ .+++.+..
T Consensus 79 ~~~~Div~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~ii~~S~~ 143 (413)
T 3oy2_A 79 VHKPDIVMIYNDPI--VIGNYLLAMGKCSHRTKIVLYVDLVSKNIR--EN-----------LWWIFSHPKVVGVMAMSKC 143 (413)
T ss_dssp HHCCSEEEEEECHH--HHHHHHHHGGGCCSCCEEEEEECCCSBSCC--GG-----------GGGGGGCTTEEEEEESSTH
T ss_pred hcCCCEEEEcchHH--HHHHHHHHhccCCCCCceeeeccccchhhH--HH-----------HHHHHhccCCceEEEcCHH
Confidence 88999999996554 33332221 11 12456777775221110 00 112233444 56666555
Q ss_pred chhh--cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCC--CCEEEEEEecccccccccccHHHHHHHHHHc
Q 004092 288 LPMM--YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILRALLPL 363 (774)
Q Consensus 288 ~~~i--~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~--~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L 363 (774)
.... ..+. ..++.+|| +|+|...+ ...++++++++ +.++++++| ++.+. ||++.+++|+..+
T Consensus 144 ~~~~~~~~~~-~~~~~vi~-ngvd~~~~--------~~~~~~~~~~~~~~~~~il~vG-r~~~~---Kg~~~li~a~~~l 209 (413)
T 3oy2_A 144 WISDICNYGC-KVPINIVS-HFVDTKTI--------YDARKLVGLSEYNDDVLFLNMN-RNTAR---KRLDIYVLAAARF 209 (413)
T ss_dssp HHHHHHHTTC-CSCEEECC-CCCCCCCC--------TTHHHHTTCGGGTTSEEEECCS-CSSGG---GTHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCceEEeC-CCCCHHHH--------HHHHHhcCCCcccCceEEEEcC-CCchh---cCcHHHHHHHHHH
Confidence 3222 1222 47899999 48887433 23467788887 889999999 78888 9999999999999
Q ss_pred hhhcccCCCCCCCeEEEEEe-CCCCCc--hHHHHHHHHHHcCCCCcc-------EEEccCc--ccHHHHHHHcCEEEEcC
Q 004092 364 FSEVSVENESNSPIKVMILS-GDSTSN--YSVVIEAIAHNLHYPLGV-------VKHMAAE--GDVDSVLNTADVVIYGS 431 (774)
Q Consensus 364 ~~~~p~~~~~~~~v~LvIvG-G~~~e~--Y~~~L~~la~~lgL~~~~-------V~flG~~--~dl~~~l~aaDI~V~PS 431 (774)
.+++|+ ++|+|+| |+.... +.+.++++++++++.+ + |.+.|++ +++..+|++||++|+||
T Consensus 210 ~~~~~~-------~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~-~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS 281 (413)
T 3oy2_A 210 ISKYPD-------AKVRFLCNSHHESKFDLHSIALRELVASGVDN-VFTHLNKIMINRTVLTDERVDMMYNACDVIVNCS 281 (413)
T ss_dssp HHHCTT-------CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSC-HHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECC
T ss_pred HHhCCC-------cEEEEEeCCcccchhhHHHHHHHHHHHcCccc-ccccccceeeccCcCCHHHHHHHHHhCCEEEeCC
Confidence 998888 9999999 765433 4588999999999998 7 8888986 69999999999999999
Q ss_pred ccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCcc---------------EE--EEcCCCHHHHHHHHHHHHHcCCC
Q 004092 432 FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVN---------------GY--LFPKENIKALTHIILQVITNGKI 494 (774)
Q Consensus 432 ~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~---------------G~--Lv~~~d~e~La~aI~~Ll~d~~~ 494 (774)
..| |||++++||||||+|||+|+.+|++|++.++.+ |+ +++++|+++|+++| ++++|
T Consensus 282 ~~E--~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~--- 355 (413)
T 3oy2_A 282 SGE--GFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKD--- 355 (413)
T ss_dssp SCC--SSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTS---
T ss_pred CcC--CCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcC---
Confidence 998 899999999999999999999999999999887 99 99999999999999 99999
Q ss_pred cHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhcCCC
Q 004092 495 SPFARNIASIGRRSV-KNLMALETIEGYAMLLENVLKLPS 533 (774)
Q Consensus 495 ~~~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~ll~~~~ 533 (774)
++.+++|++++++.+ ++|+|+.++++|.++|+++++.+.
T Consensus 356 ~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 356 EKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVES 395 (413)
T ss_dssp HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999 679999999999999999987644
No 12
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=1e-32 Score=330.49 Aligned_cols=366 Identities=7% Similarity=0.006 Sum_probs=262.9
Q ss_pred CCCeEEEEecCCC-----------CChHHHHHHH--------HHHHHHHcCCeEE----EEEcCCCcc-----hhhhh--
Q 004092 143 RKPQLALVFPDLL-----------IDPQQLQMVT--------IAIALREIGYAIQ----VYSLEDGRA-----HEVWR-- 192 (774)
Q Consensus 143 rk~rialV~~~L~-----------~GG~e~~v~~--------Lak~L~~~G~eV~----V~t~~~~~~-----~~~~~-- 192 (774)
|..+|++|.++.. .||...++.+ +++.|.++||+|+ |+|...... ....+
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i 356 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERV 356 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEEC
T ss_pred ceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceee
Confidence 4678899888764 7999999995 6666778999886 888653211 01111
Q ss_pred --hcCccEEEcccch----------------hHHH--------Hhhh--cCccEEEEcCCchhHHHHHHHhCCCCCCCEE
Q 004092 193 --NIGVPVAILQTGR----------------EKAS--------FVNW--LNYDGILVNSLEAKVVISNIMQEPFKSLPLV 244 (774)
Q Consensus 193 --~~gi~i~~l~~~~----------------~l~~--------~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI 244 (774)
..++.+..++... .+.. ++.. .+||+||+|...+ ..++.++.+ ..++|+|
T Consensus 357 ~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~s-glva~llar-~~gvP~V 434 (816)
T 3s28_A 357 YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDG-NLVASLLAH-KLGVTQC 434 (816)
T ss_dssp TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHH-HHHHHHHHH-HHTCCEE
T ss_pred cCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchH-HHHHHHHHH-HcCCCEE
Confidence 1244444443221 0111 1221 3799999998766 355555543 5679999
Q ss_pred EEEcCchhhh-hHH-----Hhhhhh-hhHHHHHHHHHHHhccEEEccCCcchh-------hccc----------------
Q 004092 245 WTIHEGTLAT-RAR-----NYASSG-QLELLNDWKKVFNRATVVVFPDYVLPM-------MYSA---------------- 294 (774)
Q Consensus 245 ~tiHg~~l~~-~~~-----k~~~~~-~~~li~~~~~~~~~a~~vv~ps~~~~~-------i~~~---------------- 294 (774)
+|.|+..... ... ...... ....+......+..++.++..+..... .|..
T Consensus 435 ~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI 514 (816)
T 3s28_A 435 TIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGI 514 (816)
T ss_dssp EECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESC
T ss_pred EEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhccccc
Confidence 9999732110 000 000000 001111223366778877776544211 1111
Q ss_pred -CCCCCEEEeCCCCCCcccccccCchhh----------------HHHHHHhCC--CCCCEEEEEEecccccccccccHHH
Q 004092 295 -FDAGNYYVIPGSPAKAWEADTNMDLYN----------------DTVRVKMGF--KPDDLVIAIVGTQFMYRGLWLEHAL 355 (774)
Q Consensus 295 -v~~~ki~vIpg~gvd~~~~~~~~~~~k----------------~~lR~~lgl--~~~~~vIl~vGsrl~~~KgiKg~~l 355 (774)
....++.+|| +|+|...|.+.....+ ...++.+|+ ++++++|+++| ++.+. ||++.
T Consensus 515 ~~~~~ki~VIp-nGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vG-Rl~~~---KGid~ 589 (816)
T 3s28_A 515 DVFDPKFNIVS-PGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMA-RLDRV---KNLSG 589 (816)
T ss_dssp CTTCTTEEECC-CCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEEC-CCCTT---TTHHH
T ss_pred ccCCCCEEEEC-CCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEc-cCccc---CCHHH
Confidence 1123899999 4888866554432211 012345566 67788999999 88888 99999
Q ss_pred HHHHHHHchhhcccCCCCCCCeEEEEEe-CCC-------CCchHHHHHHHHHHcCCCCccEEEccCc------ccHHHHH
Q 004092 356 ILRALLPLFSEVSVENESNSPIKVMILS-GDS-------TSNYSVVIEAIAHNLHYPLGVVKHMAAE------GDVDSVL 421 (774)
Q Consensus 356 LLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~-------~e~Y~~~L~~la~~lgL~~~~V~flG~~------~dl~~~l 421 (774)
+++|++.+.+..++ ++|+|+| |+. ...+.+.++++++++++.+ +|.|+|++ +++..+|
T Consensus 590 LIeA~~~L~~~~~~-------v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~-~V~flG~~~~~v~~~eL~~~~ 661 (816)
T 3s28_A 590 LVEWYGKNTRLREL-------ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNG-QFRWISSQMDRVRNGELYRYI 661 (816)
T ss_dssp HHHHHHHCHHHHHH-------CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBB-BEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-------eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCC-cEEEccCccccCCHHHHHHHH
Confidence 99999999988888 9999999 652 1125678999999999988 99999954 5678888
Q ss_pred H-HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHH----HcCCCcH
Q 004092 422 N-TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI----TNGKISP 496 (774)
Q Consensus 422 ~-aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll----~d~~~~~ 496 (774)
+ ++|++|+||..| |||++++||||||+|||+|+.||+.|++.++.+|++++++|+++++++|.+++ .| ++
T Consensus 662 ~~aaDvfV~PS~~E--gfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d---~~ 736 (816)
T 3s28_A 662 CDTKGAFVQPALYE--AFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKED---PS 736 (816)
T ss_dssp HHTTCEEEECCSCB--SSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHHC---TH
T ss_pred HhcCeEEEECCCcc--CccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhccC---HH
Confidence 8 689999999998 89999999999999999999999999999999999999999999999997776 89 99
Q ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 004092 497 FARNIASIGRRSV-KNLMALETIEGYAMLLENV 528 (774)
Q Consensus 497 ~r~~m~~~ar~~a-k~fs~~~~a~~y~~L~e~l 528 (774)
.+++|+++|++.+ ++|+|+.++++|.++|+..
T Consensus 737 ~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 737 HWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999 7899999999999999875
No 13
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.3e-32 Score=296.50 Aligned_cols=307 Identities=13% Similarity=0.047 Sum_probs=234.9
Q ss_pred CCCeEEEEecC--------C------CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHH
Q 004092 143 RKPQLALVFPD--------L------LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKA 208 (774)
Q Consensus 143 rk~rialV~~~--------L------~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~ 208 (774)
+++||+++.+. + ..||.+.++..+++.|.++||+|++++....... ..++.+........+.
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~----~~~~~~~~~~~~~~l~ 77 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG----RPGLTVVPAGEPEEIE 77 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC----STTEEECSCCSHHHHH
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC----CCcceeccCCcHHHHH
Confidence 45899999988 2 4699999999999999999999999998654322 1223333233334567
Q ss_pred HHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcc
Q 004092 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (774)
Q Consensus 209 ~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~ 288 (774)
..++..+||+||+|+.... .+. .+..++| |+++|+...... . ++.+++.+...
T Consensus 78 ~~l~~~~~Dvi~~~~~~~~-~~~----~~~~~~p-v~~~h~~~~~~~-------~--------------~d~ii~~S~~~ 130 (342)
T 2iuy_A 78 RWLRTADVDVVHDHSGGVI-GPA----GLPPGTA-FISSHHFTTRPV-------N--------------PVGCTYSSRAQ 130 (342)
T ss_dssp HHHHHCCCSEEEECSSSSS-CST----TCCTTCE-EEEEECSSSBCS-------C--------------CTTEEESCHHH
T ss_pred HHHHhcCCCEEEECCchhh-HHH----HhhcCCC-EEEecCCCCCcc-------c--------------ceEEEEcCHHH
Confidence 7788889999999997653 211 3456789 999997432211 0 33334443332
Q ss_pred hhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcc
Q 004092 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (774)
Q Consensus 289 ~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p 368 (774)
...... ..++.+||+ |+|...+..... . .+++++++++| ++.+. ||++.+++|++.+
T Consensus 131 ~~~~~~--~~~~~vi~n-gvd~~~~~~~~~----------~-~~~~~~i~~vG-~~~~~---Kg~~~li~a~~~~----- 187 (342)
T 2iuy_A 131 RAHCGG--GDDAPVIPI-PVDPARYRSAAD----------Q-VAKEDFLLFMG-RVSPH---KGALEAAAFAHAC----- 187 (342)
T ss_dssp HHHTTC--CTTSCBCCC-CBCGGGSCCSTT----------C-CCCCSCEEEES-CCCGG---GTHHHHHHHHHHH-----
T ss_pred HHHHhc--CCceEEEcC-CCChhhcCcccc----------c-CCCCCEEEEEe-ccccc---cCHHHHHHHHHhc-----
Confidence 222212 467788884 787643332211 1 23445899999 88888 9999999999987
Q ss_pred cCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCc----------cCc
Q 004092 369 VENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSF----------LEE 435 (774)
Q Consensus 369 ~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~----------~E~ 435 (774)
+ ++|+|+| |+.. +.+++++++++ + +|.|+|++ +++.++|+.||++|+||. .|
T Consensus 188 ~-------~~l~i~G~g~~~----~~l~~~~~~~~--~-~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E- 252 (342)
T 2iuy_A 188 G-------RRLVLAGPAWEP----EYFDEITRRYG--S-TVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCE- 252 (342)
T ss_dssp T-------CCEEEESCCCCH----HHHHHHHHHHT--T-TEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCC-
T ss_pred C-------cEEEEEeCcccH----HHHHHHHHHhC--C-CEEEeccCCHHHHHHHHHhCCEEEECCccccccccccccc-
Confidence 3 8999999 7654 77888888777 4 79999988 466999999999999999 67
Q ss_pred CCccHHHHHHHHcCCCEEEcCCccccccccc--CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hhc
Q 004092 436 QTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNL 512 (774)
Q Consensus 436 qGfp~~llEAMA~G~PVIatd~ggi~EiV~d--g~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k~f 512 (774)
|||++++|||+||+|||+|+.+|+.|++.+ +.+|+++++ |+++++++|.++++ ++++++.+ ++|
T Consensus 253 -~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~-----------~~~~~~~~~~~~ 319 (342)
T 2iuy_A 253 -PGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA-----------SDEVRRAAVRLW 319 (342)
T ss_dssp -CCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC-----------HHHHHHHHHHHH
T ss_pred -CccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 899999999999999999999999999999 899999999 99999999987764 56778888 789
Q ss_pred CHHHHHHHHHHHHHHHhcC
Q 004092 513 MALETIEGYAMLLENVLKL 531 (774)
Q Consensus 513 s~~~~a~~y~~L~e~ll~~ 531 (774)
+|+.++++|.++|+++++.
T Consensus 320 s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 320 GHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp BHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999764
No 14
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=3.9e-32 Score=314.39 Aligned_cols=361 Identities=13% Similarity=0.158 Sum_probs=246.9
Q ss_pred CCCCeEEEEecCC----CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhh----------------------hhcC
Q 004092 142 YRKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW----------------------RNIG 195 (774)
Q Consensus 142 ~rk~rialV~~~L----~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~----------------------~~~g 195 (774)
-+++||++|.... ..||...++..|.++|+++||+|.|+++..+.....+ ...|
T Consensus 7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 86 (536)
T 3vue_A 7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRG 86 (536)
T ss_dssp -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETT
T ss_pred CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECC
Confidence 4678999997654 4699999999999999999999999986432211000 0112
Q ss_pred ccEEEcccc------------------------h---hHH-------HHhh-------------hcCccEEEEcCCchhH
Q 004092 196 VPVAILQTG------------------------R---EKA-------SFVN-------------WLNYDGILVNSLEAKV 228 (774)
Q Consensus 196 i~i~~l~~~------------------------~---~l~-------~~i~-------------~~~~DIIhvhs~~~~~ 228 (774)
++++.+... . ++. .... +..+||+|+|.+.++
T Consensus 87 v~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~- 165 (536)
T 3vue_A 87 VDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTG- 165 (536)
T ss_dssp EEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGS-
T ss_pred ceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHH-
Confidence 332222100 0 000 0010 135678889988774
Q ss_pred HHHHHHh------CCCCCCCEEEEEcCchhhhh-----HHHhh----------------hhhhhHHHHHHHHHHHhccEE
Q 004092 229 VISNIMQ------EPFKSLPLVWTIHEGTLATR-----ARNYA----------------SSGQLELLNDWKKVFNRATVV 281 (774)
Q Consensus 229 ~l~~Ll~------~~~~~ipvI~tiHg~~l~~~-----~~k~~----------------~~~~~~li~~~~~~~~~a~~v 281 (774)
.+..++. ..+.++|+|+|+|+...+.. ..... .......+...+.....++.+
T Consensus 166 l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v 245 (536)
T 3vue_A 166 PLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRV 245 (536)
T ss_dssp THHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEE
T ss_pred HHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEE
Confidence 4443332 12357899999997211100 00000 000001123445566677777
Q ss_pred EccCCcch-hhc----------ccCCCCCEEEeCCCCCCcccccccCc----------------h-hhHHHHHHhCCC--
Q 004092 282 VFPDYVLP-MMY----------SAFDAGNYYVIPGSPAKAWEADTNMD----------------L-YNDTVRVKMGFK-- 331 (774)
Q Consensus 282 v~ps~~~~-~i~----------~~v~~~ki~vIpg~gvd~~~~~~~~~----------------~-~k~~lR~~lgl~-- 331 (774)
...|.... .+. ......++.+|+ +|+|...+.+... . .+..+++.+|++
T Consensus 246 ~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~-NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d 324 (536)
T 3vue_A 246 LTVSPYYAEELISGIARGCELDNIMRLTGITGIV-NGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVD 324 (536)
T ss_dssp EESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECC-CCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCC
T ss_pred EEcCHHHhhhhhcccccccccccccccCCeEEEE-CCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCC
Confidence 66654421 111 113346899999 4888765543211 1 145567777875
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEE
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~f 410 (774)
++.++|+++| |+.++ ||++.+++|+..+.++. .+++|+| |+. .+...++..+. ++.+ +|.+
T Consensus 325 ~~~p~i~~vg-Rl~~~---Kg~~~li~a~~~l~~~~---------~~l~l~G~G~~--~~~~~~~~~~~--~~~~-~v~~ 386 (536)
T 3vue_A 325 RKIPLIAFIG-RLEEQ---KGPDVMAAAIPELMQED---------VQIVLLGTGKK--KFEKLLKSMEE--KYPG-KVRA 386 (536)
T ss_dssp TTSCEEEEEC-CBSGG---GCHHHHHHHHHHHTTSS---------CEEEEECCBCH--HHHHHHHHHHH--HSTT-TEEE
T ss_pred CCCcEEEEEe-ecccc---CChHHHHHHHHHhHhhC---------CeEEEEeccCc--hHHHHHHHHHh--hcCC-ceEE
Confidence 5678999999 89998 99999999999997653 6888899 653 23455666666 4455 6888
Q ss_pred ccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEE----------EEcCCCH
Q 004092 411 MAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGY----------LFPKENI 478 (774)
Q Consensus 411 lG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~----------Lv~~~d~ 478 (774)
.+.. +++..+|+.||++|+||.+| |||++++|||+||+|||+|++||++|+|.|+++|+ ++++.|+
T Consensus 387 ~~~~~~~~~~~~~~~aD~~v~PS~~E--~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~ 464 (536)
T 3vue_A 387 VVKFNAPLAHLIMAGADVLAVPSRFE--PCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDV 464 (536)
T ss_dssp ECSCCHHHHHHHHHHCSEEEECCSCC--SSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHH
T ss_pred EEeccHHHHHHHHHhhheeecccccC--CCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCH
Confidence 7754 67888999999999999998 89999999999999999999999999999999998 6777889
Q ss_pred HHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 004092 479 KALTHIILQVIT--NGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (774)
Q Consensus 479 e~La~aI~~Ll~--d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll 529 (774)
++|+++|.++++ + ++.+++|.++|. .++|||++++++|.++|+++.
T Consensus 465 ~~la~ai~ral~~~~---~~~~~~~~~~am--~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 465 KKVAATLKRAIKVVG---TPAYEEMVRNCM--NQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHTT---SHHHHHHHHHHH--HSCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC---cHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHhh
Confidence 999999999886 5 556677776653 367999999999999999973
No 15
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=1e-28 Score=269.62 Aligned_cols=319 Identities=12% Similarity=0.065 Sum_probs=235.2
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc-------------------
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------------------- 204 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~------------------- 204 (774)
++||+++.+ ..||.+..+..+++.|.++||+|++++...+.........++++..++..
T Consensus 6 ~mkIl~~~~--~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (364)
T 1f0k_A 6 GKRLMVMAG--GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFN 83 (364)
T ss_dssp -CEEEEECC--SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHH
T ss_pred CcEEEEEeC--CCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccCCceEEecCCccCcCccHHHHHHHHHHHH
Confidence 378998874 45799999999999999999999999987643323334446665544321
Q ss_pred --hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEE
Q 004092 205 --REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVV 282 (774)
Q Consensus 205 --~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv 282 (774)
..+...++..+||+||+++.... ....+.. +..++|+|++.|+.... ... +.....++.+.
T Consensus 84 ~~~~l~~~l~~~~pDvv~~~~~~~~-~~~~~~~-~~~~~p~v~~~~~~~~~-~~~--------------~~~~~~~d~v~ 146 (364)
T 1f0k_A 84 AWRQARAIMKAYKPDVVLGMGGYVS-GPGGLAA-WSLGIPVVLHEQNGIAG-LTN--------------KWLAKIATKVM 146 (364)
T ss_dssp HHHHHHHHHHHHCCSEEEECSSTTH-HHHHHHH-HHTTCCEEEEECSSSCC-HHH--------------HHHTTTCSEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCc-hHHHHHH-HHcCCCEEEEecCCCCc-HHH--------------HHHHHhCCEEE
Confidence 12334456679999999987642 3333332 24569999999963211 001 11223455555
Q ss_pred ccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHH
Q 004092 283 FPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLP 362 (774)
Q Consensus 283 ~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~ 362 (774)
.++... ++ ++.+++ +|++...+.. . ..+.++++++++++++++|+++.+. |+++.+++|+..
T Consensus 147 ~~~~~~------~~--~~~~i~-n~v~~~~~~~---~---~~~~~~~~~~~~~~il~~~g~~~~~---k~~~~li~a~~~ 208 (364)
T 1f0k_A 147 QAFPGA------FP--NAEVVG-NPVRTDVLAL---P---LPQQRLAGREGPVRVLVVGGSQGAR---ILNQTMPQVAAK 208 (364)
T ss_dssp ESSTTS------SS--SCEECC-CCCCHHHHTS---C---CHHHHHTTCCSSEEEEEECTTTCCH---HHHHHHHHHHHH
T ss_pred ecChhh------cC--CceEeC-Cccchhhccc---c---hhhhhcccCCCCcEEEEEcCchHhH---HHHHHHHHHHHH
Confidence 443322 22 566777 4777632221 1 1245677877777777777688887 899999999999
Q ss_pred chhhcccCCCCCCCeE-EEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccH
Q 004092 363 LFSEVSVENESNSPIK-VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPE 440 (774)
Q Consensus 363 L~~~~p~~~~~~~~v~-LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~ 440 (774)
+.+ + ++ ++++| |+ . +.+++.+++++++ +|.|+|+++++..+|+.||++|+|| | |+
T Consensus 209 l~~---~-------~~~l~i~G~~~-~----~~l~~~~~~~~~~--~v~~~g~~~~~~~~~~~ad~~v~~s-----g-~~ 265 (364)
T 1f0k_A 209 LGD---S-------VTIWHQSGKGS-Q----QSVEQAYAEAGQP--QHKVTEFIDDMAAAYAWADVVVCRS-----G-AL 265 (364)
T ss_dssp HGG---G-------EEEEEECCTTC-H----HHHHHHHHHTTCT--TSEEESCCSCHHHHHHHCSEEEECC-----C-HH
T ss_pred hcC---C-------cEEEEEcCCch-H----HHHHHHHhhcCCC--ceEEecchhhHHHHHHhCCEEEECC-----c-hH
Confidence 865 3 77 55677 54 2 6788888888875 5999999999999999999999998 4 99
Q ss_pred HHHHHHHcCCCEEEcCCcccc--------cccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 004092 441 ILVKALCFRKPIIAPDLSNIR--------KYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVK 510 (774)
Q Consensus 441 ~llEAMA~G~PVIatd~ggi~--------EiV~dg~~G~Lv~~~d--~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak 510 (774)
+++|||+||+|||+++.+|++ +++.++. |++++++| +++++++|.++ | ++.+++|++++++.++
T Consensus 266 ~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l--~---~~~~~~~~~~~~~~~~ 339 (364)
T 1f0k_A 266 TVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW--S---RETLLTMAERARAASI 339 (364)
T ss_dssp HHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC--C---HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc--C---HHHHHHHHHHHHHhhc
Confidence 999999999999999999864 4666665 99999988 99999999999 8 8999999999999888
Q ss_pred hcCHHHHHHHHHHHHHHH
Q 004092 511 NLMALETIEGYAMLLENV 528 (774)
Q Consensus 511 ~fs~~~~a~~y~~L~e~l 528 (774)
+|+|+++++.|.++|++.
T Consensus 340 ~~~~~~~~~~~~~~y~~~ 357 (364)
T 1f0k_A 340 PDATERVANEVSRVARAL 357 (364)
T ss_dssp TTHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.96 E-value=3.3e-29 Score=280.99 Aligned_cols=340 Identities=8% Similarity=0.050 Sum_probs=217.1
Q ss_pred CCCCCeEEEEecCCCCC---hHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhc-CccE-----------EEcccch
Q 004092 141 GYRKPQLALVFPDLLID---PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI-GVPV-----------AILQTGR 205 (774)
Q Consensus 141 ~~rk~rialV~~~L~~G---G~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~-gi~i-----------~~l~~~~ 205 (774)
..+++||+++++.+.++ |+...+..+++.|.++||+|+|++....+........ +.+. .......
T Consensus 43 ~~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (413)
T 2x0d_A 43 SIKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNPKDLQSFKSFKYVMPEEDKDFALQIVPFND 122 (413)
T ss_dssp CCCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCHHHHGGGTTSEECCTTCCCCCSEEEEECSC
T ss_pred CCCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCChHHHHhhhccceeeccCCccccceeeeccc
Confidence 34679999999999875 7777899999999999999999998653211111111 1111 0001100
Q ss_pred hHHHHhhhcCccEEEEcCCchhHHHHHHHh------CCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhcc
Q 004092 206 EKASFVNWLNYDGILVNSLEAKVVISNIMQ------EPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRAT 279 (774)
Q Consensus 206 ~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~------~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~ 279 (774)
.....+...++|+||++++... .....+. ......|.++.+|+..... ....... ...+..+..+.
T Consensus 123 ~~~~~~~~~~~Dvv~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~--~~~~~~~~~~~ 194 (413)
T 2x0d_A 123 RYNRTIPVAKHDIFIATAWWTA-YAAQRIVSWQSDTYGIPPNKILYIIQDFEPGF-----YQWSSQY--VLAESTYKYRG 194 (413)
T ss_dssp CTTCCEEECTTEEEEECSHHHH-HHHHHHHHHHHHHHTCCCCCEEEEECSCGGGG-----SCSSHHH--HHHHHTTSCCS
T ss_pred cccccccCCCCCEEEEehHHHH-HHHHHhhhhhhhhcccccCcEEEEEeechhhc-----CccChHH--HHHHHHhccCC
Confidence 0111122357999999986553 2222220 0123468888888632110 0000001 01122333333
Q ss_pred --EEEccCCcch--hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHH
Q 004092 280 --VVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (774)
Q Consensus 280 --~vv~ps~~~~--~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~l 355 (774)
.++.++.... +...+++..++.++|+ ++|...+... . ...+++..++++|+...+. ||++.
T Consensus 195 ~~~vi~~S~~~~~~l~~~g~~~~~~~~i~~-g~d~~~~~~~----------~-~~~~~~~~il~~gr~~~~~---Kg~~~ 259 (413)
T 2x0d_A 195 PQIAVFNSELLKQYFNNKGYNFTDEYFFQP-KINTTLKNYI----------N-DKRQKEKIILVYGRPSVKR---NAFTL 259 (413)
T ss_dssp CEEEEEESHHHHHHHHHHTCCCSEEEEECC-CCCHHHHTTT----------T-SCCCCCSEEEEEECTTCGG---GCHHH
T ss_pred ceEEEEcCHHHHHHHHHcCCCCCceEEeCC-CcCchhhccc----------c-cccCCCCEEEEEecCchhc---cCHHH
Confidence 2444444422 1122344456778873 6665222110 1 1223455788899445677 99999
Q ss_pred HHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCc
Q 004092 356 ILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSF 432 (774)
Q Consensus 356 LLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~ 432 (774)
+++|++.+.+++|+ ..+++|+|+| |+.. .++++.+ +|.|+|++ +++.++|++||++|+||.
T Consensus 260 li~A~~~l~~~~~~----~~~~~l~ivG~~~~~-----------~~l~~~~-~v~f~G~~~~~~l~~~~~~adv~v~pS~ 323 (413)
T 2x0d_A 260 IVEALKIFVQKYDR----SNEWKIISVGEKHKD-----------IALGKGI-HLNSLGKLTLEDYADLLKRSSIGISLMI 323 (413)
T ss_dssp HHHHHHHHHHHCTT----GGGCEEEEEESCCCC-----------EEEETTE-EEEEEESCCHHHHHHHHHHCCEEECCCS
T ss_pred HHHHHHHHHHhCCC----CCceEEEEEcCCchh-----------hhcCCcC-cEEEcCCCCHHHHHHHHHhCCEEEEecC
Confidence 99999999877652 0028999999 6653 2356766 89999986 899999999999999999
Q ss_pred cCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc
Q 004092 433 LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNL 512 (774)
Q Consensus 433 ~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~f 512 (774)
.| +||++++||||||+|||++ .+|..|++.++.+|++++++|+++||++|.++++| ++.+++ ++++.+++|
T Consensus 324 ~E--~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~---~~~~~~---~~~~~~~~~ 394 (413)
T 2x0d_A 324 SP--HPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSLEQLNPENIAETLVELCMS---FNNRDV---DKKESSNMM 394 (413)
T ss_dssp SS--SCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHH---TC----------CCBSCG
T ss_pred CC--CCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcC---HHHHHH---hHHHHHHhC
Confidence 98 8999999999999999995 46778999999999999999999999999999999 877776 566666789
Q ss_pred CHHHHHHHHHHHHHHHh
Q 004092 513 MALETIEGYAMLLENVL 529 (774)
Q Consensus 513 s~~~~a~~y~~L~e~ll 529 (774)
+|+++.++ .++|++++
T Consensus 395 ~W~~~~~~-~~~~~~l~ 410 (413)
T 2x0d_A 395 FYINEFNE-FSFIKEIE 410 (413)
T ss_dssp GGCCCC----TTHHHHH
T ss_pred CHHHHHHH-HHHHHHHH
Confidence 99998766 55555543
No 17
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.95 E-value=1.4e-27 Score=277.10 Aligned_cols=333 Identities=11% Similarity=0.064 Sum_probs=242.1
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHH--HHHcCCeEEEEEcCCC---cchhhhhhcCccEEEccc--chhHHHHhhh
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIA--LREIGYAIQVYSLEDG---RAHEVWRNIGVPVAILQT--GREKASFVNW 213 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~--L~~~G~eV~V~t~~~~---~~~~~~~~~gi~i~~l~~--~~~l~~~i~~ 213 (774)
+-+++||+++.+.+..||.+.++..+++. +.+.||+|++++.... .........+ .+..+.. ...+...++.
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~ 280 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVTALGHLATAKHIRH 280 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECCCCCHHHHHHHHHh
Confidence 46678999999999999999999999999 7889999999997532 2222233333 3333321 2346677888
Q ss_pred cCccEEEEcCCchhH-HHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhc
Q 004092 214 LNYDGILVNSLEAKV-VISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMY 292 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~-~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~ 292 (774)
.+||+||.++..... .+..+. . ...|+++++|+.+........ + +..++.++.++.....
T Consensus 281 ~~~Div~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~d~~i~~s~~~~~-- 341 (568)
T 2vsy_A 281 HGIDLLFDLRGWGGGGRPEVFA-L--RPAPVQVNWLAYPGTSGAPWM-----D---------YVLGDAFALPPALEPF-- 341 (568)
T ss_dssp TTCSEEEECSSCTTCSSCHHHH-T--CCSSEEEEESSSSSCCCCTTC-----C---------EEEECTTTSCTTTGGG--
T ss_pred CCCCEEEECCCCCCcchHHHHh-c--CCCceeEeeecCCcccCCCCc-----e---------EEEECCCcCCcccccC--
Confidence 999999986543211 122222 2 236888888863321100000 0 0112222222222111
Q ss_pred ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCC
Q 004092 293 SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (774)
Q Consensus 293 ~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~ 372 (774)
+ .+++.+||+ ...... ..........|+++|++++. +++++| ++.+ ||++.+++|+..+.++.|+
T Consensus 342 --~-~~~i~~ipn-~~~~~~--~~~~~~~~~~r~~~~~~~~~-~v~~~g-~~~~----K~~~~li~a~~~l~~~~~~--- 406 (568)
T 2vsy_A 342 --Y-SEHVLRLQG-AFQPSD--TSRVVAEPPSRTQCGLPEQG-VVLCCF-NNSY----KLNPQSMARMLAVLREVPD--- 406 (568)
T ss_dssp --C-SSEEEECSS-CSCCCC--TTCCCCCCCCTGGGTCCTTS-CEEEEC-CCGG----GCCHHHHHHHHHHHHHCTT---
T ss_pred --C-cceeEcCCC-cCCCCC--CCCCCCCCCCccccCCCCCC-EEEEeC-Cccc----cCCHHHHHHHHHHHHhCCC---
Confidence 1 267888885 222210 00000122346788888776 455888 8877 8888899999999988888
Q ss_pred CCCCeEEEEEeCCCCCchHHHHHHHHHHcCCC-CccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcC
Q 004092 373 SNSPIKVMILSGDSTSNYSVVIEAIAHNLHYP-LGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (774)
Q Consensus 373 ~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~-~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G 449 (774)
++|+|+|+. ..+.+.+++.++++|+. + +|+|+|++ +++..+|+.||++|+||.+ |||++++|||+||
T Consensus 407 ----~~l~i~G~~--g~~~~~l~~~~~~~~l~~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~~---~~g~~~lEAma~G 476 (568)
T 2vsy_A 407 ----SVLWLLSGP--GEADARLRAFAHAQGVDAQ-RLVFMPKLPHPQYLARYRHADLFLDTHPY---NAHTTASDALWTG 476 (568)
T ss_dssp ----CEEEEECCS--TTHHHHHHHHHHHTTCCGG-GEEEECCCCHHHHHHHGGGCSEEECCSSS---CCSHHHHHHHHTT
T ss_pred ----cEEEEecCC--HHHHHHHHHHHHHcCCChh-HEEeeCCCCHHHHHHHHhcCCEEeeCCCC---CCcHHHHHHHhCC
Confidence 999999931 12458899999999998 7 99999988 5899999999999999976 5999999999999
Q ss_pred CCEEE-------cCCc-------ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH---Hhc
Q 004092 450 KPIIA-------PDLS-------NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV---KNL 512 (774)
Q Consensus 450 ~PVIa-------td~g-------gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a---k~f 512 (774)
+|||+ |+.+ |++|+|.+ |+++++++|.++++| ++.+++|++++++.+ +.|
T Consensus 477 ~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~~~~la~~i~~l~~~---~~~~~~~~~~~~~~~~~~~~f 543 (568)
T 2vsy_A 477 CPVLTTPGETFAARVAGSLNHHLGLDEMNVA----------DDAAFVAKAVALASD---PAALTALHARVDVLRRASGVF 543 (568)
T ss_dssp CCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----------SHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHSSTT
T ss_pred CCEEeccCCCchHHHHHHHHHHCCChhhhcC----------CHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhcCCCC
Confidence 99999 9999 99998865 899999999999999 999999999999998 579
Q ss_pred CHHHHHHHHHHHHHHHhcC
Q 004092 513 MALETIEGYAMLLENVLKL 531 (774)
Q Consensus 513 s~~~~a~~y~~L~e~ll~~ 531 (774)
+|+.++++|.++|+++++.
T Consensus 544 ~~~~~~~~~~~~y~~~~~~ 562 (568)
T 2vsy_A 544 HMDGFADDFGALLQALARR 562 (568)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.93 E-value=2.4e-25 Score=248.84 Aligned_cols=330 Identities=14% Similarity=0.110 Sum_probs=209.7
Q ss_pred CCCCCeEEEEecC-CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcch---------------hhhhhcCccEEEcccc
Q 004092 141 GYRKPQLALVFPD-LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH---------------EVWRNIGVPVAILQTG 204 (774)
Q Consensus 141 ~~rk~rialV~~~-L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~---------------~~~~~~gi~i~~l~~~ 204 (774)
+.+++||+++... .. ++.......+++.|.++| +|+|++....... ......++.+......
T Consensus 11 ~~~~MkIl~is~~~~p-~~~~~~~~~l~~~l~~~G-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 88 (406)
T 2hy7_A 11 GIRRPCYLVLSSHDFR-TPRRANIHFITDQLALRG-TTRFFSLRYSRLSRMKGDMRLPLDDTANTVVSHNGVDCYLWRTT 88 (406)
T ss_dssp --CCSCEEEEESSCTT-SSSCCHHHHHHHHHHHHS-CEEEEECSCBTTHHHHTCTTGGGGGGTTSEEEETTEEEEECCBS
T ss_pred CCCCceEEEEecccCC-ChhhhhHhHHHHHHHhCC-ceEEEEecccHHHHhhccchhhhhccCccceecCCeEEEeeccc
Confidence 4457899999886 43 222223455788888999 9999965321100 0001124444322110
Q ss_pred -----------hhHHH------------Hhhh--cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHh
Q 004092 205 -----------REKAS------------FVNW--LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNY 259 (774)
Q Consensus 205 -----------~~l~~------------~i~~--~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~ 259 (774)
..+.. .+.. .++|+||.+..... .+..+.. ..++|++++.|+.......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~DvIh~~~~~~~-~~~~~~~--~~~~p~v~~~h~~~~~~~~--- 162 (406)
T 2hy7_A 89 VHPFNTRRSWLRPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAV-AFIELAK--RVNPAAKLVYRASDGLSTI--- 162 (406)
T ss_dssp SCCCCCCCGGGHHHHHHHHHHHHHCCCHHHHHHHHHCSEEEEESSGGG-GGHHHHH--HHCTTSEEEEEESSCHHHH---
T ss_pred cCCccccchhhhccchhHHHHHHHhHHHHHHHHhcCCCEEEECCchHH-HHHHHHH--HhCCCEEEEEeccchhhcc---
Confidence 00000 0111 27999995544332 2112221 2358999999974331101
Q ss_pred hhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEE
Q 004092 260 ASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAI 339 (774)
Q Consensus 260 ~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~ 339 (774)
.. ........+..+..++.++..+........... ++.+|| +|+|...+..... ...++.+++++
T Consensus 163 ~~--~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~--~i~vip-ngvd~~~f~~~~~----------~~~~~~~~i~~ 227 (406)
T 2hy7_A 163 NV--ASYIEREFDRVAPTLDVIALVSPAMAAEVVSRD--NVFHVG-HGVDHNLDQLGDP----------SPYAEGIHAVA 227 (406)
T ss_dssp TC--CHHHHHHHHHHGGGCSEEEESCGGGGGGCSCST--TEEECC-CCBCTTHHHHHCS----------CSCCSSEEEEE
T ss_pred cc--cHHHHHHHHHHHHhCCEEEEcCHHHHHHHHhcC--CEEEEc-CCcChHhcCcccc----------cccCCCcEEEE
Confidence 00 011122334466788888877766443332222 899999 4888743321111 01123379999
Q ss_pred EecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--cc
Q 004092 340 VGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GD 416 (774)
Q Consensus 340 vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~d 416 (774)
+| ++.+. ||+ +++ +.+..|+ ++|+|+| |+ ++++++.+ +|.|+|++ ++
T Consensus 228 vG-rl~~~---Kg~---~~~---l~~~~~~-------~~l~ivG~g~------------~~~~~l~~-~V~f~G~~~~~~ 277 (406)
T 2hy7_A 228 VG-SMLFD---PEF---FVV---ASKAFPQ-------VTFHVIGSGM------------GRHPGYGD-NVIVYGEMKHAQ 277 (406)
T ss_dssp EC-CTTBC---HHH---HHH---HHHHCTT-------EEEEEESCSS------------CCCTTCCT-TEEEECCCCHHH
T ss_pred Ee-ccccc---cCH---HHH---HHHhCCC-------eEEEEEeCch------------HHhcCCCC-CEEEcCCCCHHH
Confidence 99 88888 666 333 3445667 9999999 76 34457777 89999987 68
Q ss_pred HHHHHHHcCEEEEcCccCcCCccHHHHHHH-------HcCCCEEEcCCcccccccccCccEEE-EcCCCHHHHHHHHHHH
Q 004092 417 VDSVLNTADVVIYGSFLEEQTFPEILVKAL-------CFRKPIIAPDLSNIRKYVDDRVNGYL-FPKENIKALTHIILQV 488 (774)
Q Consensus 417 l~~~l~aaDI~V~PS~~E~qGfp~~llEAM-------A~G~PVIatd~ggi~EiV~dg~~G~L-v~~~d~e~La~aI~~L 488 (774)
+..+|++||++|+||..| |||++++||| |||+|||+|+. +.++.+|++ ++++|+++|+++|.++
T Consensus 278 l~~~~~~adv~v~ps~~E--~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~~~la~ai~~l 349 (406)
T 2hy7_A 278 TIGYIKHARFGIAPYASE--QVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNADSVIAAITQA 349 (406)
T ss_dssp HHHHHHTCSEEECCBSCS--CCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCEEEECCCcc--cCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999998 8999999999 99999999987 677889999 9999999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHhcCCCCCCCCCcccccCc
Q 004092 489 ITNGKISPFARNIASIGRRSVKNLMALETIEGYAML--LENVLKLPSEVAFPKSIKELSP 546 (774)
Q Consensus 489 l~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L--~e~ll~~~~~~~~~~~~~~~~~ 546 (774)
++| ++ +..+++|+|+.+++++.++ |+++... ..+|.+.|++..
T Consensus 350 l~~---~~---------~~~~~~~sw~~~a~~~~~~~~y~~~~~~---~~~~~~~~~~~~ 394 (406)
T 2hy7_A 350 LEA---PR---------VRYRQCLNWSDTTDRVLDPRAYPETRLY---PHPPTAAPQLSS 394 (406)
T ss_dssp HHC---CC---------CCCSCCCBHHHHHHHHHCGGGSGGGBSS---CCC---------
T ss_pred HhC---cc---------hhhhhcCCHHHHHHHHHHhhcccccCcC---CCCCCccccccc
Confidence 999 66 1234679999999999999 8886543 233556666654
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.93 E-value=5.9e-26 Score=249.47 Aligned_cols=346 Identities=12% Similarity=0.064 Sum_probs=226.7
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCC-eEEEEEcCCCc--chhhhhhcCccE-EEccc--------------chh
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGY-AIQVYSLEDGR--AHEVWRNIGVPV-AILQT--------------GRE 206 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~-eV~V~t~~~~~--~~~~~~~~gi~i-~~l~~--------------~~~ 206 (774)
+||+++.+.. +....+..++++|.++|+ ++.|+...... ........++.. ..+.. ...
T Consensus 1 mkIl~v~~~~---~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (384)
T 1vgv_A 1 MKVLTVFGTR---PEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEG 77 (384)
T ss_dssp CEEEEEECSH---HHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHHH
T ss_pred CeEEEEeccc---HHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHcCCCCCcceecCCCCccHHHHHHHHHHH
Confidence 4677776642 223456789999999994 88876654322 122233334332 22221 123
Q ss_pred HHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHH-HHhccEEEccC
Q 004092 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKV-FNRATVVVFPD 285 (774)
Q Consensus 207 l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~-~~~a~~vv~ps 285 (774)
+..+++..+||+||+|+.....+...+.. +..++|+|++.|+...... + ....... .+.. ...++.+..++
T Consensus 78 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a-~~~~ip~v~~~~~~~~~~~---~-~~~~~~~---~~~~~~~~~d~ii~~s 149 (384)
T 1vgv_A 78 LKPILAEFKPDVVLVHGDTTTTLATSLAA-FYQRIPVGHVEAGLRTGDL---Y-SPWPEEA---NRTLTGHLAMYHFSPT 149 (384)
T ss_dssp HHHHHHHHCCSEEEEETTCHHHHHHHHHH-HTTTCCEEEESCCCCCSCT---T-SSTTHHH---HHHHHHTTCSEEEESS
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHH-HHHCCCEEEEecccccccc---c-CCCchHh---hHHHHHhhccEEEcCc
Confidence 45567778999999997633223333433 3567999998886321100 0 0000110 1111 23466666665
Q ss_pred Ccch--hhcccCCCCCEEEeCCCC-CCcccccccC----chhhHHHHHHhC-CCCCC-EEEEEEeccccc-ccccccHHH
Q 004092 286 YVLP--MMYSAFDAGNYYVIPGSP-AKAWEADTNM----DLYNDTVRVKMG-FKPDD-LVIAIVGTQFMY-RGLWLEHAL 355 (774)
Q Consensus 286 ~~~~--~i~~~v~~~ki~vIpg~g-vd~~~~~~~~----~~~k~~lR~~lg-l~~~~-~vIl~vGsrl~~-~KgiKg~~l 355 (774)
.... ....+++.+++.++++ | +|...+.... ...+..+++++| +++++ ++++++| ++.+ . ||++.
T Consensus 150 ~~~~~~l~~~g~~~~~i~vi~n-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~g-r~~~~~---kg~~~ 224 (384)
T 1vgv_A 150 ETSRQNLLRENVADSRIFITGN-TVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGH-RRESFG---RGFEE 224 (384)
T ss_dssp HHHHHHHHHTTCCGGGEEECCC-HHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECC-CBSSCC---HHHHH
T ss_pred HHHHHHHHHcCCChhhEEEeCC-hHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeC-Cccccc---hHHHH
Confidence 4422 2223455567888884 4 3331111000 001125667777 75544 4566777 6654 4 78999
Q ss_pred HHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCcc
Q 004092 356 ILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL 433 (774)
Q Consensus 356 LLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~ 433 (774)
+++|+..+.+++|+ +++++++|+. ..+.+.+++++. ..+ +|.|+|.. +++..+|+.||++|+||
T Consensus 225 li~a~~~l~~~~~~-------~~l~i~~g~~-~~~~~~l~~~~~---~~~-~v~~~g~~~~~~~~~~~~~ad~~v~~S-- 290 (384)
T 1vgv_A 225 ICHALADIATTHQD-------IQIVYPVHLN-PNVREPVNRILG---HVK-NVILIDPQEYLPFVWLMNHAWLILTDS-- 290 (384)
T ss_dssp HHHHHHHHHHHCTT-------EEEEEECCBC-HHHHHHHHHHHT---TCT-TEEEECCCCHHHHHHHHHHCSEEEESS--
T ss_pred HHHHHHHHHhhCCC-------eEEEEEcCCC-HHHHHHHHHHhh---cCC-CEEEeCCCCHHHHHHHHHhCcEEEECC--
Confidence 99999999888887 9998875532 124455555543 234 79996643 78999999999999999
Q ss_pred CcCCccHHHHHHHHcCCCEEEcCC-cccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc
Q 004092 434 EEQTFPEILVKALCFRKPIIAPDL-SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNL 512 (774)
Q Consensus 434 E~qGfp~~llEAMA~G~PVIatd~-ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~f 512 (774)
. | +++|||+||+|||+++. ++.+|++.+| +|+++++ |+++|+++|.++++| ++.+++|+++++++++.|
T Consensus 291 g--~---~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d~~~la~~i~~ll~d---~~~~~~~~~~~~~~~~~~ 360 (384)
T 1vgv_A 291 G--G---IQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-DKQRIVEEVTRLLKD---ENEYQAMSRAHNPYGDGQ 360 (384)
T ss_dssp S--T---GGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-SHHHHHHHHHHHHHC---HHHHHHHHSSCCTTCCSC
T ss_pred c--c---hHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-CHHHHHHHHHHHHhC---hHHHhhhhhccCCCcCCC
Confidence 2 3 38999999999999987 8999999888 8999987 999999999999999 999999999998877789
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 004092 513 MALETIEGYAMLLENVLK 530 (774)
Q Consensus 513 s~~~~a~~y~~L~e~ll~ 530 (774)
+++++++.+.++|+++.+
T Consensus 361 ~~~~i~~~~~~~~~~~~~ 378 (384)
T 1vgv_A 361 ACSRILEALKNNRISLGS 378 (384)
T ss_dssp HHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999888776543
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.93 E-value=4.5e-25 Score=241.39 Aligned_cols=340 Identities=11% Similarity=0.062 Sum_probs=218.8
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHc-C-CeEEEEEcCCCcc--hhhhhhcCccE-EEccc--------------c
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREI-G-YAIQVYSLEDGRA--HEVWRNIGVPV-AILQT--------------G 204 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~-G-~eV~V~t~~~~~~--~~~~~~~gi~i-~~l~~--------------~ 204 (774)
++||+++.+... ....+..+++.|.+. | |++.+++...+.. .......++.. ..+.. .
T Consensus 8 ~mkIl~v~~~~~---~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T 3beo_A 8 RLKVMTIFGTRP---EAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGL 84 (375)
T ss_dssp CEEEEEEECSHH---HHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHHHHH
T ss_pred CceEEEEecCcH---HHHHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcCCCCccccccCCCcccHHHHHHHHH
Confidence 478999986532 222456788888876 4 8887776554321 11122233332 11111 0
Q ss_pred hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHH-HHHhccEEEc
Q 004092 205 REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK-VFNRATVVVF 283 (774)
Q Consensus 205 ~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~-~~~~a~~vv~ 283 (774)
..+.++++..+||+||+|+.........+.. +..++|+|++.|+.... ..+ ...... ..+. ....++.+..
T Consensus 85 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~-~~~~ip~v~~~~~~~~~---~~~-~~~~~~---~~~~~~~~~~d~ii~ 156 (375)
T 3beo_A 85 EGLDKVMKEAKPDIVLVHGDTTTTFIASLAA-FYNQIPVGHVEAGLRTW---DKY-SPYPEE---MNRQLTGVMADLHFS 156 (375)
T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHHHHHHH-HHTTCCEEEESCCCCCS---CTT-SSTTHH---HHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHH-HHHCCCEEEEecccccc---ccc-CCChhH---hhhhHHhhhhheeeC
Confidence 1244557778999999987644223333332 24578999877753111 000 000011 1111 1233666666
Q ss_pred cCCcch--hhcccCCCCCEEEeCCCC-CCcccccccCchhhHHHHHHhCCCCCCEEEEEEeccccc-ccccccHHHHHHH
Q 004092 284 PDYVLP--MMYSAFDAGNYYVIPGSP-AKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMY-RGLWLEHALILRA 359 (774)
Q Consensus 284 ps~~~~--~i~~~v~~~ki~vIpg~g-vd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~-~KgiKg~~lLLeA 359 (774)
++.... ....+++.+++.++++ | +|...+.... ..+..+++++ +++.++++++| ++.+ . ||++.+++|
T Consensus 157 ~s~~~~~~~~~~g~~~~~i~vi~n-~~~d~~~~~~~~-~~~~~~~~~~--~~~~~vl~~~g-r~~~~~---K~~~~li~a 228 (375)
T 3beo_A 157 PTAKSATNLQKENKDESRIFITGN-TAIDALKTTVKE-TYSHPVLEKL--GNNRLVLMTAH-RRENLG---EPMRNMFRA 228 (375)
T ss_dssp SSHHHHHHHHHTTCCGGGEEECCC-HHHHHHHHHCCS-SCCCHHHHTT--TTSEEEEEECC-CGGGTT---HHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcccEEEECC-hhHhhhhhhhhh-hhhHHHHHhc--cCCCeEEEEec-ccccch---hHHHHHHHH
Confidence 655422 2223455678999985 5 6653222111 0122344444 34445566667 7654 4 889999999
Q ss_pred HHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCC
Q 004092 360 LLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQT 437 (774)
Q Consensus 360 ~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qG 437 (774)
+..+.+++|+ +++++.+|+. ..+.+.++++. +..+ +|.|+|+. .++..+|+.||++|+||
T Consensus 229 ~~~l~~~~~~-------~~~i~~~g~~-~~~~~~~~~~~---~~~~-~v~~~g~~~~~~~~~~~~~ad~~v~~s------ 290 (375)
T 3beo_A 229 IKRLVDKHED-------VQVVYPVHMN-PVVRETANDIL---GDYG-RIHLIEPLDVIDFHNVAARSYLMLTDS------ 290 (375)
T ss_dssp HHHHHHHCTT-------EEEEEECCSC-HHHHHHHHHHH---TTCT-TEEEECCCCHHHHHHHHHTCSEEEECC------
T ss_pred HHHHHhhCCC-------eEEEEeCCCC-HHHHHHHHHHh---hccC-CEEEeCCCCHHHHHHHHHhCcEEEECC------
Confidence 9999888887 8865533653 22333333332 3334 79997755 58999999999999998
Q ss_pred ccHHHHHHHHcCCCEEEcCC-cccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHH
Q 004092 438 FPEILVKALCFRKPIIAPDL-SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALE 516 (774)
Q Consensus 438 fp~~llEAMA~G~PVIatd~-ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~ 516 (774)
|++++|||+||+|||+++. ++.+|++.+| +|+++++ |+++|+++|.++++| ++.+++|++++++++++|+|++
T Consensus 291 -g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
T 3beo_A 291 -GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-DEETIFSLADELLSD---KEAHDKMSKASNPYGDGRASER 364 (375)
T ss_dssp -HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC---HHHHHHHCCCCCTTCCSCHHHH
T ss_pred -CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-CHHHHHHHHHHHHhC---hHhHhhhhhcCCCCCCCcHHHH
Confidence 4569999999999999964 8999999888 8999986 999999999999999 9999999999988777899999
Q ss_pred HHHHHHHHHH
Q 004092 517 TIEGYAMLLE 526 (774)
Q Consensus 517 ~a~~y~~L~e 526 (774)
+++.+.++++
T Consensus 365 i~~~~~~~~~ 374 (375)
T 3beo_A 365 IVEAILKHFN 374 (375)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999888764
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.92 E-value=1.3e-24 Score=247.84 Aligned_cols=212 Identities=8% Similarity=-0.023 Sum_probs=168.3
Q ss_pred CCEEEeCCCCCCcccccccCch---h-hHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCC
Q 004092 298 GNYYVIPGSPAKAWEADTNMDL---Y-NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENES 373 (774)
Q Consensus 298 ~ki~vIpg~gvd~~~~~~~~~~---~-k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~ 373 (774)
.++.+|| +|+|...|...... . ...+|++++ ++++|+++| |+.+. ||++.+|+|++.+.+++|+ .
T Consensus 219 ~~v~vip-~GID~~~f~~~~~~~~~~~~~~lr~~~~---~~~vil~Vg-Rl~~~---Kgi~~ll~A~~~ll~~~p~---~ 287 (482)
T 1uqt_A 219 FRTEVYP-IGIEPKEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVE-RLDYS---KGLPERFLAYEALLEKYPQ---H 287 (482)
T ss_dssp EEEEECC-CCCCHHHHHHHHHSCCCHHHHHHHHHTT---TCEEEEEEC-CBCGG---GCHHHHHHHHHHHHHHCGG---G
T ss_pred EEEEEEe-ccCCHHHHHHHhcCcchHHHHHHHHHhC---CCEEEEEEe-CCccc---CCHHHHHHHHHHHHHhCcc---c
Confidence 4678888 58997554322110 0 346777776 567999999 99998 9999999999999988875 1
Q ss_pred CCCeEEEEEeCCCC---C---chHHHHHHHHHHcCC----CC-ccEEE-ccCc--ccHHHHHHHcCEEEEcCccCcCCcc
Q 004092 374 NSPIKVMILSGDST---S---NYSVVIEAIAHNLHY----PL-GVVKH-MAAE--GDVDSVLNTADVVIYGSFLEEQTFP 439 (774)
Q Consensus 374 ~~~v~LvIvGG~~~---e---~Y~~~L~~la~~lgL----~~-~~V~f-lG~~--~dl~~~l~aaDI~V~PS~~E~qGfp 439 (774)
..+++|+++|++.. + ++.+.+++++.+++. .+ ..|.+ .|.+ +++..+|++||++|+||..| |||
T Consensus 288 ~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~E--Gfg 365 (482)
T 1uqt_A 288 HGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRD--GMN 365 (482)
T ss_dssp TTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSB--SCC
T ss_pred cCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcc--cCC
Confidence 22488999994322 2 245566666655432 11 02665 5654 89999999999999999999 899
Q ss_pred HHHHHHHHcCC-----CEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHhcC
Q 004092 440 EILVKALCFRK-----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS-PFARNIASIGRRSVKNLM 513 (774)
Q Consensus 440 ~~llEAMA~G~-----PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~-~~r~~m~~~ar~~ak~fs 513 (774)
++++||||||+ |||+|+.+|..+.+. +|+++++.|++++|++|.+++++ + +.++++++++++.+++|+
T Consensus 366 Lv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~g~lv~p~d~~~lA~ai~~lL~~---~~~~r~~~~~~~~~~v~~~s 439 (482)
T 1uqt_A 366 LVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTM---SLAERISRHAEMLDVIVKND 439 (482)
T ss_dssp HHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TSEEECTTCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHhCCCCCCCCEEEECCCCCHHHhC---CeEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCC
Confidence 99999999997 899999888888873 69999999999999999999985 4 567789999999998899
Q ss_pred HHHHHHHHHHHHHHH
Q 004092 514 ALETIEGYAMLLENV 528 (774)
Q Consensus 514 ~~~~a~~y~~L~e~l 528 (774)
++.+++.|.+.|+++
T Consensus 440 ~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 440 INHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999886
No 22
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.92 E-value=3.7e-24 Score=213.84 Aligned_cols=184 Identities=16% Similarity=0.232 Sum_probs=157.5
Q ss_pred CCCCccccc--ccCc---hhhHHHHHHhCCCCCCEEEEEEecccc-cccccccHHHHHHHHHHch--hhcccCCCCCCCe
Q 004092 306 SPAKAWEAD--TNMD---LYNDTVRVKMGFKPDDLVIAIVGTQFM-YRGLWLEHALILRALLPLF--SEVSVENESNSPI 377 (774)
Q Consensus 306 ~gvd~~~~~--~~~~---~~k~~lR~~lgl~~~~~vIl~vGsrl~-~~KgiKg~~lLLeA~~~L~--~~~p~~~~~~~~v 377 (774)
+|+|...+. +... ..+..++++++++++ ++++++| ++. +. ||++.+++|+..+. +++|+ +
T Consensus 4 ngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~~-~~i~~~G-~~~~~~---K~~~~li~a~~~l~~~~~~~~-------~ 71 (200)
T 2bfw_A 4 NGIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIG-RFDRGQ---KGVDVLLKAIEILSSKKEFQE-------M 71 (200)
T ss_dssp -CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCSC-EEEEEES-CBCSSS---SCHHHHHHHHHHHTTSGGGGG-------E
T ss_pred CccChhhccccccccchhhHHHHHHHHcCCCCC-CEEEEee-cccccc---CCHHHHHHHHHHHHhhccCCC-------e
Confidence 467764444 3221 015678899998755 4899999 777 77 99999999999998 77788 9
Q ss_pred EEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEE-ccCcc--cHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEE
Q 004092 378 KVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH-MAAEG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPII 453 (774)
Q Consensus 378 ~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~f-lG~~~--dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVI 453 (774)
+|+|+| |+. .+.+.+++++++++ +|.| +|+++ ++..+|+.||++|+||..| |+|++++|||+||+|||
T Consensus 72 ~l~i~G~~~~--~~~~~l~~~~~~~~----~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e--~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 72 RFIIIGKGDP--ELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFE--PFGLVALEAMCLGAIPI 143 (200)
T ss_dssp EEEEECCBCH--HHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECCSCC--SSCHHHHHHHHTTCEEE
T ss_pred EEEEECCCCh--HHHHHHHHHHHhcC----CEEEEeccCCHHHHHHHHHHCCEEEECCCCC--CccHHHHHHHHCCCCEE
Confidence 999999 551 24478888998776 4999 99884 9999999999999999998 89999999999999999
Q ss_pred EcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHhcC
Q 004092 454 APDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVIT-NGKISPFARNIASIGRRSVKNLM 513 (774)
Q Consensus 454 atd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~-d~~~~~~r~~m~~~ar~~ak~fs 513 (774)
+++.++..+++ ++.+|++++++|+++++++|.++++ | ++.+++|++++++.+++|+
T Consensus 144 ~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~~~---~~~~~~~~~~a~~~~~~fs 200 (200)
T 2bfw_A 144 ASAVGGLRDII-TNETGILVKAGDPGELANAILKALELS---RSDLSKFRENCKKRAMSFS 200 (200)
T ss_dssp EESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTC
T ss_pred EeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcC
Confidence 99999999999 8889999999999999999999999 9 9999999999999985564
No 23
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.91 E-value=2.7e-23 Score=239.65 Aligned_cols=306 Identities=10% Similarity=0.074 Sum_probs=200.1
Q ss_pred cCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhh--------HHHhhhh----------hhhHHHHHHHHHH
Q 004092 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR--------ARNYASS----------GQLELLNDWKKVF 275 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~--------~~k~~~~----------~~~~li~~~~~~~ 275 (774)
..+||+|+|.+..+ ....++.....++|+|+|+|...+.+. ....+.. .........+...
T Consensus 180 ~~pdIiH~HDW~tg-~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga 258 (725)
T 3nb0_A 180 QHAIVAHFHEWLAG-VALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAA 258 (725)
T ss_dssp SEEEEEEEESGGGC-THHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhh-HHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHH
Confidence 45999999999985 555555444678999999997532211 0000110 0112344455566
Q ss_pred HhccEEEccCCcchh-hcccCCCCCEEEeCCCCCCcccccccCch--h----hHHHHHH--------hCCCCCCEEEEEE
Q 004092 276 NRATVVVFPDYVLPM-MYSAFDAGNYYVIPGSPAKAWEADTNMDL--Y----NDTVRVK--------MGFKPDDLVIAIV 340 (774)
Q Consensus 276 ~~a~~vv~ps~~~~~-i~~~v~~~ki~vIpg~gvd~~~~~~~~~~--~----k~~lR~~--------lgl~~~~~vIl~v 340 (774)
..++.+...+..+.. +..-+....-.+|| +|+|...+.+.... . +.++.+. ++++.++.+++++
T Consensus 259 ~~AD~ITTVS~~yA~Ei~~Ll~r~~d~iIp-NGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liifi 337 (725)
T 3nb0_A 259 HSADVFTTVSQITAFEAEHLLKRKPDGILP-NGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFI 337 (725)
T ss_dssp HHSSEEEESSHHHHHHHHHHTSSCCSEECC-CCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEEE
T ss_pred HhCCEEEECCHHHHHHHHHHhcCCCCEEEc-CCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEEE
Confidence 788888777666221 11111221113388 49998655543111 1 2222221 2455455555554
Q ss_pred ecccc-cccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCC------------------------------
Q 004092 341 GTQFM-YRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTS------------------------------ 388 (774)
Q Consensus 341 Gsrl~-~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e------------------------------ 388 (774)
.+|+. .+ ||++++++|+.+|............-+.|+|+. +....
T Consensus 338 vgRle~~n---KGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 414 (725)
T 3nb0_A 338 AGRYEYKN---KGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIF 414 (725)
T ss_dssp ESSCCTTT---TTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccc---CCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHH
Confidence 33888 68 999999999999975421111122226777776 41110
Q ss_pred -------------------------------------------------------chHHHHHHHHHHcCCCCcc------
Q 004092 389 -------------------------------------------------------NYSVVIEAIAHNLHYPLGV------ 407 (774)
Q Consensus 389 -------------------------------------------------------~Y~~~L~~la~~lgL~~~~------ 407 (774)
...+.+...++++++.+ .
T Consensus 415 ~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N-~~~drVK 493 (725)
T 3nb0_A 415 DHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFN-SPSDRVK 493 (725)
T ss_dssp HHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCC-CTTCSEE
T ss_pred HHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCC-CcCCcee
Confidence 01223344556677776 4
Q ss_pred EEEcc-Cc--------ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccC-------ccEE
Q 004092 408 VKHMA-AE--------GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDR-------VNGY 471 (774)
Q Consensus 408 V~flG-~~--------~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg-------~~G~ 471 (774)
|+|++ +. .++.++|+.||++|+||.+| |||++++||||||+|||+|+.+|+.++|.++ .+|+
T Consensus 494 VIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~E--gfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~ 571 (725)
T 3nb0_A 494 MIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYE--PWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGI 571 (725)
T ss_dssp EEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSB--SSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTE
T ss_pred EEEeccccCCCCccchhHHHHHHhhceEEEeccccC--CCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceE
Confidence 66665 43 26899999999999999999 8999999999999999999999999999875 3698
Q ss_pred EEcC---CCHHHHHHHHHHHH----H-cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 472 LFPK---ENIKALTHIILQVI----T-NGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 472 Lv~~---~d~e~La~aI~~Ll----~-d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
++++ .|+++++++|.+++ . + +..+..|++++++.+++|+|+++++.|.++|+.++.
T Consensus 572 lV~~rd~~d~ee~aeaLa~aL~~f~~~d---~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL~ 635 (725)
T 3nb0_A 572 YIVDRRFKAPDESVEQLVDYMEEFVKKT---RRQRINQRNATEALSDLLDWKRMGLEYVKARQLALR 635 (725)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHHHTCC---HHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8853 46666655555554 3 5 566778999999888999999999999999999874
No 24
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.91 E-value=1.4e-23 Score=203.61 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=137.9
Q ss_pred CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 334 ~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
+++++++| ++.+. ||++.+++|+..+. +.|+ ++|+|+| |+.. +.++++++++++ +|.+ |
T Consensus 2 ~~~i~~~G-~~~~~---Kg~~~li~a~~~l~-~~~~-------~~l~i~G~g~~~----~~~~~~~~~~~~---~v~~-g 61 (166)
T 3qhp_A 2 PFKIAMVG-RYSNE---KNQSVLIKAVALSK-YKQD-------IVLLLKGKGPDE----KKIKLLAQKLGV---KAEF-G 61 (166)
T ss_dssp CEEEEEES-CCSTT---TTHHHHHHHHHTCT-TGGG-------EEEEEECCSTTH----HHHHHHHHHHTC---EEEC-C
T ss_pred ceEEEEEe-ccchh---cCHHHHHHHHHHhc-cCCC-------eEEEEEeCCccH----HHHHHHHHHcCC---eEEE-e
Confidence 46899999 88888 99999999999985 4577 9999999 7664 788899998887 4888 9
Q ss_pred Cc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCC-CEEE-cCCcccccccccCccEEEEcCCCHHHHHHHHHHH
Q 004092 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK-PIIA-PDLSNIRKYVDDRVNGYLFPKENIKALTHIILQV 488 (774)
Q Consensus 413 ~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~-PVIa-td~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~L 488 (774)
++ +++..+|+.||++|+||..| |||++++|||+||+ |||+ ++.++..+++.++.+ +++++|+++++++|.++
T Consensus 62 ~~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l 137 (166)
T 3qhp_A 62 FVNSNELLEILKTCTLYVHAANVE--SEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWW 137 (166)
T ss_dssp CCCHHHHHHHHTTCSEEEECCCSC--CCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHhCCEEEECCccc--CccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHH
Confidence 86 78999999999999999988 89999999999998 9999 568899999988654 88899999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Q 004092 489 ITNGKISPFARNIASIGRRSVKNLMALETIEG 520 (774)
Q Consensus 489 l~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~ 520 (774)
++| ++.+++|++++++.+++|+|++++++
T Consensus 138 ~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 138 LEN---KLERERMQNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHC---HHHHHHHHHHHHHHHHHHC-------
T ss_pred HhC---HHHHHHHHHHHHHHHHHCChhhhhcC
Confidence 999 99999999999999989999998763
No 25
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.89 E-value=4.5e-22 Score=225.52 Aligned_cols=287 Identities=10% Similarity=0.028 Sum_probs=204.1
Q ss_pred CccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc----hhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch-
Q 004092 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP- 289 (774)
Q Consensus 215 ~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~----~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~- 289 (774)
.-|+|.+|..... .+..++.+...+.++.+.+|.. .++..+... ....++ .....++.++|......
T Consensus 149 ~~D~VwVhDYhL~-llp~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp~~---~r~ell----~gll~~DligF~t~~y~~ 220 (496)
T 3t5t_A 149 ADPVYLVHDYQLV-GVPALLREQRPDAPILLFVHIPWPSADYWRILPKE---IRTGIL----HGMLPATTIGFFADRWCR 220 (496)
T ss_dssp SSCEEEEESGGGT-THHHHHHHHCTTSCEEEECCSCCCCHHHHTTSCHH---HHHHHH----HHHTTSSEEEESSHHHHH
T ss_pred CCCEEEEeCccHh-HHHHHHHhhCCCCeEEEEEcCCCCCHHHHhhCcHh---HHHHHH----HHHHhCCEEEEecHHHHH
Confidence 5789999999884 6666666656788999999962 111111100 001111 12223344444333200
Q ss_pred -------hhc---------ccC----CCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccc
Q 004092 290 -------MMY---------SAF----DAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (774)
Q Consensus 290 -------~i~---------~~v----~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~Kg 349 (774)
.+. ..+ ...++.++| +|+|...+.......+..+|++++ ++++|+++| |+.+.
T Consensus 221 ~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP-~GID~~~f~~~~~~~~~~lr~~~~---~~~lIl~Vg-RLd~~-- 293 (496)
T 3t5t_A 221 NFLESVADLLPDARIDREAMTVEWRGHRTRLRTMP-LGYSPLTLDGRNPQLPEGIEEWAD---GHRLVVHSG-RTDPI-- 293 (496)
T ss_dssp HHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECC-CCBCGGGC----CCCCTTHHHHHT---TSEEEEEEE-ESSGG--
T ss_pred HHHHHHHHHhcCCcccccCCeEEECCEEEEEEEec-cEeCHHHhchhhHHHHHHHHHHhC---CceEEEEcc-cCccc--
Confidence 000 000 113567788 699986665443322356777877 578999999 99999
Q ss_pred cccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCC------CchHHHHHHHHHHcCCC--CccEEEccCc--ccHHH
Q 004092 350 WLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST------SNYSVVIEAIAHNLHYP--LGVVKHMAAE--GDVDS 419 (774)
Q Consensus 350 iKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~------e~Y~~~L~~la~~lgL~--~~~V~flG~~--~dl~~ 419 (774)
||+..+|+|+ .+.+++|+ .. ++.|+++|++.+ .++...+++++.+++.. ...|.|+|.+ +++..
T Consensus 294 -KGi~~lL~Af-~ll~~~P~---~~-~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~a 367 (496)
T 3t5t_A 294 -KNAERAVRAF-VLAARGGG---LE-KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIA 367 (496)
T ss_dssp -GCHHHHHHHH-HHHHHTSS---CT-TEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHH
T ss_pred -cCHHHHHHHH-HHHHhCcc---cc-eEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHH
Confidence 9999999999 99888886 12 478998983321 13455666666654321 0048999965 78999
Q ss_pred HHHHcCEEEEcCccCcCCccHHHHHHHHcC---CCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc-
Q 004092 420 VLNTADVVIYGSFLEEQTFPEILVKALCFR---KPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS- 495 (774)
Q Consensus 420 ~l~aaDI~V~PS~~E~qGfp~~llEAMA~G---~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~- 495 (774)
+|++||++|+||..| |||++.+|||||| .|+|+|+.+|..+.+.+ +|++|+|.|++++|++|.+++++ +
T Consensus 368 ly~~ADv~vv~SlrE--GfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~~--~allVnP~D~~~lA~AI~~aL~m---~~ 440 (496)
T 3t5t_A 368 CFRRADLLIFNSTVD--GQNLSTFEAPLVNERDADVILSETCGAAEVLGE--YCRSVNPFDLVEQAEAISAALAA---GP 440 (496)
T ss_dssp HHHHCSEEEECCSSB--SCCSHHHHHHHHCSSCCEEEEETTBTTHHHHGG--GSEEECTTBHHHHHHHHHHHHHC---CH
T ss_pred HHHhccEEEECcccc--cCChhHHHHHHhCCCCCCEEEeCCCCCHHHhCC--CEEEECCCCHHHHHHHHHHHHcC---CH
Confidence 999999999999999 9999999999997 89999999999888843 69999999999999999999997 6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 004092 496 PFARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (774)
Q Consensus 496 ~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll 529 (774)
++++++.+++++.++++++...++.|.+-++.+-
T Consensus 441 ~er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~~~ 474 (496)
T 3t5t_A 441 RQRAEAAARRRDAARPWTLEAWVQAQLDGLAADH 474 (496)
T ss_dssp HHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhcc
Confidence 5677888999999999999999999999888763
No 26
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.87 E-value=1.8e-21 Score=215.30 Aligned_cols=298 Identities=12% Similarity=0.030 Sum_probs=201.5
Q ss_pred CChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhh--cCcc--EEEccc--chhHHHHhhhcCccEEEEcCCchhHH
Q 004092 156 IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRN--IGVP--VAILQT--GREKASFVNWLNYDGILVNSLEAKVV 229 (774)
Q Consensus 156 ~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~--~gi~--i~~l~~--~~~l~~~i~~~~~DIIhvhs~~~~~~ 229 (774)
..|....+..|++.|.+.| +|.+.+...... ..... .++. .. ++. ...+.++++..+||+||++.....+.
T Consensus 49 s~G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~-~~~~~~~~~v~~~~~-~p~~~~~~l~~~l~~~~pDiv~~~~~~~~~~ 125 (374)
T 2xci_A 49 SIGEFNTFLPILKELKREH-RILLTYFSPRAR-EYLKTKSDFYDCLHP-LPLDNPFSVKRFEELSKPKALIVVEREFWPS 125 (374)
T ss_dssp SHHHHHHHHHHHHHHHHHS-CEEEEESCGGGH-HHHHTTGGGCSEEEE-CCCSSHHHHHHHHHHHCCSEEEEESCCCCHH
T ss_pred CHHHHHHHHHHHHHHHhcC-CEEEEEcCCcHH-HHHHHhcccccceeE-CCCCCHHHHHHHHHHhCCCEEEEECccCcHH
Confidence 3577889999999999999 887666543221 11111 2333 32 332 34566778889999999864433222
Q ss_pred HHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhh--cccCCCCCEEEeCCCC
Q 004092 230 ISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMM--YSAFDAGNYYVIPGSP 307 (774)
Q Consensus 230 l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i--~~~v~~~ki~vIpg~g 307 (774)
+...+ . . |++...+.... + . ..+..+..++.+.+++...... ..+++ ++.++++..
T Consensus 126 ~~~~~---~-~-p~~~~~~~~~~---------~---~---~~~~~~~~~d~ii~~S~~~~~~l~~~g~~--ki~vi~n~~ 183 (374)
T 2xci_A 126 LIIFT---K-V-PKILVNAYAKG---------S---L---IEKILSKKFDLIIMRTQEDVEKFKTFGAK--RVFSCGNLK 183 (374)
T ss_dssp HHHHC---C-S-CEEEEEECCCC---------C---H---HHHHHHTTCSEEEESCHHHHHHHHTTTCC--SEEECCCGG
T ss_pred HHHHH---h-C-CEEEEEeecCc---------h---H---HHHHHHHhCCEEEECCHHHHHHHHHcCCC--eEEEcCCCc
Confidence 22222 1 1 77654442110 0 0 2334456677777776663222 22343 888888522
Q ss_pred CCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCC
Q 004092 308 AKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDS 386 (774)
Q Consensus 308 vd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~ 386 (774)
.+. .... +.. + +.+++++.| + . . ||++.+++|++.+.+++|+ ++|+|+| |+.
T Consensus 184 f~~-----~~~~-----~~~--l--~~~vi~~~~-~-~-~---k~~~~ll~A~~~l~~~~p~-------~~lvivG~g~~ 236 (374)
T 2xci_A 184 FIC-----QKGK-----GIK--L--KGEFIVAGS-I-H-T---GEVEIILKAFKEIKKTYSS-------LKLILVPRHIE 236 (374)
T ss_dssp GCC-----CCCS-----CCC--C--SSCEEEEEE-E-C-G---GGHHHHHHHHHHHHTTCTT-------CEEEEEESSGG
T ss_pred cCC-----CcCh-----hhh--h--cCCEEEEEe-C-C-C---chHHHHHHHHHHHHhhCCC-------cEEEEECCCHH
Confidence 221 0000 001 1 124555544 3 3 3 8899999999999988888 9999999 765
Q ss_pred CCchHHHHHHHHHHcCCC--------CccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc-CC
Q 004092 387 TSNYSVVIEAIAHNLHYP--------LGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP-DL 457 (774)
Q Consensus 387 ~e~Y~~~L~~la~~lgL~--------~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat-d~ 457 (774)
+ .+.++++++++++. + +|.+.|..+|+..+|+.||++++||..++ ++|++++||||||+|||++ +.
T Consensus 237 ~---~~~l~~~~~~~gl~~~~~~~~~~-~v~~~~~~~dl~~~y~~aDv~vl~ss~~e-~gg~~~lEAmA~G~PVI~~~~~ 311 (374)
T 2xci_A 237 N---AKIFEKKARDFGFKTSFFENLEG-DVILVDRFGILKELYPVGKIAIVGGTFVN-IGGHNLLEPTCWGIPVIYGPYT 311 (374)
T ss_dssp G---HHHHHHHHHHTTCCEEETTCCCS-SEEECCSSSCHHHHGGGEEEEEECSSSSS-SCCCCCHHHHTTTCCEEECSCC
T ss_pred H---HHHHHHHHHHCCCceEEecCCCC-cEEEECCHHHHHHHHHhCCEEEECCcccC-CCCcCHHHHHHhCCCEEECCCc
Confidence 3 24688899988886 3 68999988999999999999988876643 6889999999999999975 78
Q ss_pred cccccccccC-ccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hcCH
Q 004092 458 SNIRKYVDDR-VNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-NLMA 514 (774)
Q Consensus 458 ggi~EiV~dg-~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak-~fs~ 514 (774)
++.+|++.+. .+|++++++|+++|+++|.++++| +.+++|+++|++.++ ++..
T Consensus 312 ~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d----~~r~~mg~~ar~~~~~~~ga 366 (374)
T 2xci_A 312 HKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV----KKEIKVEEKSREIKGCYLEK 366 (374)
T ss_dssp TTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS----CCCCCHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHhcccH
Confidence 8899988663 478899999999999999999987 245679999999884 4543
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.87 E-value=5.9e-22 Score=195.33 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=132.0
Q ss_pred HhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHH--HcCC
Q 004092 327 KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAH--NLHY 403 (774)
Q Consensus 327 ~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~--~lgL 403 (774)
.+.++.++++++++| ++.+. ||++.+++|+..+ ++ ++|+|+| |+.. +.++++++ .+++
T Consensus 16 ~~~~~~~~~~i~~~G-~~~~~---Kg~~~li~a~~~l----~~-------~~l~i~G~~~~~----~~l~~~~~~~~~~l 76 (177)
T 2f9f_A 16 KFKFKCYGDFWLSVN-RIYPE---KRIELQLEVFKKL----QD-------EKLYIVGWFSKG----DHAERYARKIMKIA 76 (177)
T ss_dssp TCCCCCCCSCEEEEC-CSSGG---GTHHHHHHHHHHC----TT-------SCEEEEBCCCTT----STHHHHHHHHHHHS
T ss_pred ccccCCCCCEEEEEe-ccccc---cCHHHHHHHHHhC----CC-------cEEEEEecCccH----HHHHHHHHhhhccc
Confidence 345677888999999 78887 9999999999988 45 8999999 7766 34567777 7788
Q ss_pred CCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHH
Q 004092 404 PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL 481 (774)
Q Consensus 404 ~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~L 481 (774)
.+ +|.|+|++ +++..+|+.||++|+||..| ++|++++|||+||+|||+++.++..+++.++.+|+++ +.|++++
T Consensus 77 ~~-~v~~~g~~~~~e~~~~~~~adi~v~ps~~e--~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l 152 (177)
T 2f9f_A 77 PD-NVKFLGSVSEEELIDLYSRCKGLLCTAKDE--DFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEI 152 (177)
T ss_dssp CT-TEEEEESCCHHHHHHHHHHCSEEEECCSSC--CSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHH
T ss_pred CC-cEEEeCCCCHHHHHHHHHhCCEEEeCCCcC--CCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHH
Confidence 88 89999988 45999999999999999988 8999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHcCCCcHH-HHHHHHH
Q 004092 482 THIILQVITNGKISPF-ARNIASI 504 (774)
Q Consensus 482 a~aI~~Ll~d~~~~~~-r~~m~~~ 504 (774)
+++|.++++| ++. ++++.++
T Consensus 153 ~~~i~~l~~~---~~~~~~~~~~~ 173 (177)
T 2f9f_A 153 IDAMKKVSKN---PDKFKKDCFRR 173 (177)
T ss_dssp HHHHHHHHHC---TTTTHHHHHHH
T ss_pred HHHHHHHHhC---HHHHHHHHHHH
Confidence 9999999999 764 3344333
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.87 E-value=4e-22 Score=218.72 Aligned_cols=338 Identities=9% Similarity=-0.002 Sum_probs=207.8
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCcc--hhhhhhcCccE-EEccc--------------chh
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDGRA--HEVWRNIGVPV-AILQT--------------GRE 206 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~-G~eV~V~t~~~~~~--~~~~~~~gi~i-~~l~~--------------~~~ 206 (774)
+||+++.+.... ...+..+++.|.+. ||++.+++...... .......++.. ..+.. ...
T Consensus 6 mkIl~v~~~~~~---~~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (376)
T 1v4v_A 6 KRVVLAFGTRPE---ATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQ 82 (376)
T ss_dssp EEEEEEECSHHH---HHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHH
T ss_pred eEEEEEEeccHH---HHHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcCCCcccccccCCCCccHHHHHHHHHHH
Confidence 688888875321 12356789999988 79988776543211 12233344432 12221 113
Q ss_pred HHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCC
Q 004092 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDY 286 (774)
Q Consensus 207 l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~ 286 (774)
+.++++..+||+||+|......+...+.. +..++|+++ .|+...... .+ ........ .......++.+..++.
T Consensus 83 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a-~~~~ip~v~-~~~~~~~~~--~~-~~~~~~~~--~~~~~~~~~~~~~~s~ 155 (376)
T 1v4v_A 83 AARALKEMGADYVLVHGDTLTTFAVAWAA-FLEGIPVGH-VEAGLRSGN--LK-EPFPEEAN--RRLTDVLTDLDFAPTP 155 (376)
T ss_dssp HHHHHHHTTCSEEEEESSCHHHHHHHHHH-HHTTCCEEE-ETCCCCCSC--TT-SSTTHHHH--HHHHHHHCSEEEESSH
T ss_pred HHHHHHHcCCCEEEEeCChHHHHHHHHHH-HHhCCCEEE-EeCCCcccc--cc-CCCchHHH--HHHHHHHhceeeCCCH
Confidence 44556778999999987654323333333 345799864 443211000 00 00001111 1112234566655654
Q ss_pred cch--hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHch
Q 004092 287 VLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLF 364 (774)
Q Consensus 287 ~~~--~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~ 364 (774)
... ....+++.+++.++++..+|...+.. .+..+++++ +++.++++++| |+... |+++.+++|+..+.
T Consensus 156 ~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~~----~~~~~~~~~--~~~~~vl~~~g-r~~~~---k~~~~ll~a~~~l~ 225 (376)
T 1v4v_A 156 LAKANLLKEGKREEGILVTGQTGVDAVLLAA----KLGRLPEGL--PEGPYVTVTMH-RRENW---PLLSDLAQALKRVA 225 (376)
T ss_dssp HHHHHHHTTTCCGGGEEECCCHHHHHHHHHH----HHCCCCTTC--CSSCEEEECCC-CGGGG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcceEEEECCchHHHHhhhh----hhhHHHHhc--CCCCEEEEEeC-cccch---HHHHHHHHHHHHHH
Confidence 422 22335556778888853344311100 000112222 23455556666 77665 69999999999998
Q ss_pred hhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHH
Q 004092 365 SEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEIL 442 (774)
Q Consensus 365 ~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~l 442 (774)
+++|+ +++++++|+.. .+.+.+++++. . .+ +|.|+|.. .++..+|++||++|+|| + | + +
T Consensus 226 ~~~~~-------~~lv~~~g~~~-~~~~~l~~~~~--~-~~-~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g--~-~ 286 (376)
T 1v4v_A 226 EAFPH-------LTFVYPVHLNP-VVREAVFPVLK--G-VR-NFVLLDPLEYGSMAALMRASLLLVTDS--G--G--L-Q 286 (376)
T ss_dssp HHCTT-------SEEEEECCSCH-HHHHHHHHHHT--T-CT-TEEEECCCCHHHHHHHHHTEEEEEESC--H--H--H-H
T ss_pred hhCCC-------eEEEEECCCCH-HHHHHHHHHhc--c-CC-CEEEECCCCHHHHHHHHHhCcEEEECC--c--C--H-H
Confidence 88887 88888633211 23356666553 2 34 79999533 38999999999999998 3 3 3 8
Q ss_pred HHHHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004092 443 VKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGY 521 (774)
Q Consensus 443 lEAMA~G~PVIat-d~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y 521 (774)
+|||+||+|||++ +.++..+++.++ +|++++ .|+++|+++|.++++| ++.+++|++++ +.|.+...++++
T Consensus 287 lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~~~la~~i~~ll~d---~~~~~~~~~~~----~~~~~~~~~~~i 357 (376)
T 1v4v_A 287 EEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDPEGVYRVVKGLLEN---PEELSRMRKAK----NPYGDGKAGLMV 357 (376)
T ss_dssp HHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCHHHHHHHHHHHHTC---HHHHHHHHHSC----CSSCCSCHHHHH
T ss_pred HHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCHHHHHHHHHHHHhC---hHhhhhhcccC----CCCCCChHHHHH
Confidence 8999999999987 578888987665 699996 4999999999999999 98999998643 445555666667
Q ss_pred HHHHHHHhc
Q 004092 522 AMLLENVLK 530 (774)
Q Consensus 522 ~~L~e~ll~ 530 (774)
.++++++++
T Consensus 358 ~~~i~~~~~ 366 (376)
T 1v4v_A 358 ARGVAWRLG 366 (376)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 777777664
No 29
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.81 E-value=1.2e-18 Score=191.93 Aligned_cols=325 Identities=13% Similarity=0.138 Sum_probs=202.0
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc------------------
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------------------ 204 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~------------------ 204 (774)
|++||++..+ ..||--.-...+|++|.++||+|.+++...+-........++++..++..
T Consensus 1 M~~~i~i~~G--GTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T 3s2u_A 1 MKGNVLIMAG--GTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELL 78 (365)
T ss_dssp --CEEEEECC--SSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHH
T ss_pred CCCcEEEEcC--CCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHH
Confidence 5677776544 45676667899999999999999999876543333444455555444321
Q ss_pred ---hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEE
Q 004092 205 ---REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVV 281 (774)
Q Consensus 205 ---~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~v 281 (774)
.....+++..+||+|+.+..... ....+.+ +..++|++..-.+ .......+++. ..++.+
T Consensus 79 ~~~~~~~~~l~~~~PDvVi~~g~~~s-~p~~laA-~~~~iP~vihe~n-~~~G~~nr~l~--------------~~a~~v 141 (365)
T 3s2u_A 79 KSLFQALRVIRQLRPVCVLGLGGYVT-GPGGLAA-RLNGVPLVIHEQN-AVAGTANRSLA--------------PIARRV 141 (365)
T ss_dssp HHHHHHHHHHHHHCCSEEEECSSSTH-HHHHHHH-HHTTCCEEEEECS-SSCCHHHHHHG--------------GGCSEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcch-HHHHHHH-HHcCCCEEEEecc-hhhhhHHHhhc--------------ccccee
Confidence 11234567789999999877663 3333333 3567998853322 11111111111 223332
Q ss_pred EccCCcchhhcccC-CCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHH
Q 004092 282 VFPDYVLPMMYSAF-DAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRAL 360 (774)
Q Consensus 282 v~ps~~~~~i~~~v-~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~ 360 (774)
... .. ..+ ...+..++ ++++....+... +...+++++++.++.+|+..... +..+.+++|+
T Consensus 142 ~~~-~~-----~~~~~~~k~~~~-g~pvr~~~~~~~--------~~~~~~~~~~~~ilv~gGs~g~~---~~~~~~~~al 203 (365)
T 3s2u_A 142 CEA-FP-----DTFPASDKRLTT-GNPVRGELFLDA--------HARAPLTGRRVNLLVLGGSLGAE---PLNKLLPEAL 203 (365)
T ss_dssp EES-ST-----TSSCC---CEEC-CCCCCGGGCCCT--------TSSCCCTTSCCEEEECCTTTTCS---HHHHHHHHHH
T ss_pred eec-cc-----ccccCcCcEEEE-CCCCchhhccch--------hhhcccCCCCcEEEEECCcCCcc---ccchhhHHHH
Confidence 221 00 111 12333333 456654222111 22446677777888887777765 6777888999
Q ss_pred HHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccH
Q 004092 361 LPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPE 440 (774)
Q Consensus 361 ~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~ 440 (774)
..+..+.. +.+++++|... .+.+.+..++++. ++.+.++.+|+.++|++||++|..+ | ++
T Consensus 204 ~~l~~~~~--------~~vi~~~G~~~---~~~~~~~~~~~~~---~~~v~~f~~dm~~~l~~aDlvI~ra-----G-~~ 263 (365)
T 3s2u_A 204 AQVPLEIR--------PAIRHQAGRQH---AEITAERYRTVAV---EADVAPFISDMAAAYAWADLVICRA-----G-AL 263 (365)
T ss_dssp HTSCTTTC--------CEEEEECCTTT---HHHHHHHHHHTTC---CCEEESCCSCHHHHHHHCSEEEECC-----C-HH
T ss_pred Hhcccccc--------eEEEEecCccc---cccccceeccccc---ccccccchhhhhhhhccceEEEecC-----C-cc
Confidence 88865432 45555554322 2455555664443 5778899999999999999999654 3 78
Q ss_pred HHHHHHHcCCCEEEcCCcccc--------cccccCccEEEEcCC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 004092 441 ILVKALCFRKPIIAPDLSNIR--------KYVDDRVNGYLFPKE--NIKALTHIILQVITNGKISPFARNIASIGRRSVK 510 (774)
Q Consensus 441 ~llEAMA~G~PVIatd~ggi~--------EiV~dg~~G~Lv~~~--d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak 510 (774)
++.|||++|+|+|..+.+... +.+.+...|++++.. +++.|+++|.++++| ++.+++|++++++.++
T Consensus 264 Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d---~~~~~~m~~~a~~~~~ 340 (365)
T 3s2u_A 264 TVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMH---PETLRSMADQARSLAK 340 (365)
T ss_dssp HHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC---THHHHHHHHHHHHTCC
T ss_pred hHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCC---HHHHHHHHHHHHhcCC
Confidence 999999999999988766432 344444568888764 589999999999999 9999999999998876
Q ss_pred hcCHHHHHHHHHHHHHH
Q 004092 511 NLMALETIEGYAMLLEN 527 (774)
Q Consensus 511 ~fs~~~~a~~y~~L~e~ 527 (774)
....+++++..+++.+.
T Consensus 341 ~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 341 PEATRTVVDACLEVARG 357 (365)
T ss_dssp TTHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcc
Confidence 66667777666665443
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.81 E-value=1.5e-18 Score=192.29 Aligned_cols=328 Identities=10% Similarity=-0.008 Sum_probs=202.9
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEccc-----------------
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT----------------- 203 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~----------------- 203 (774)
..+++||+++.+. .+|....+..+++.|.++||+|.+++... ........|+++..++.
T Consensus 17 ~~~~MrIl~~~~~--~~Gh~~~~~~la~~L~~~GheV~v~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 3otg_A 17 EGRHMRVLFASLG--THGHTYPLLPLATAARAAGHEVTFATGEG--FAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTD 92 (412)
T ss_dssp -CCSCEEEEECCS--SHHHHGGGHHHHHHHHHTTCEEEEEECGG--GHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCS
T ss_pred ccceeEEEEEcCC--CcccHHHHHHHHHHHHHCCCEEEEEccHH--HHHHHHhcCCceeecCcccccchhhhhhhhhccc
Confidence 4567899988854 56777778899999999999999999753 23344555666665552
Q ss_pred --------------------------chhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHH
Q 004092 204 --------------------------GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRAR 257 (774)
Q Consensus 204 --------------------------~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~ 257 (774)
...+...++..+||+|+++....... ++. ...++|+|++.|+........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~---~aa-~~~giP~v~~~~~~~~~~~~~ 168 (412)
T 3otg_A 93 SPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAG---LAA-LKAGIPTICHGVGRDTPDDLT 168 (412)
T ss_dssp CCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHH---HHH-HHHTCCEEEECCSCCCCSHHH
T ss_pred CCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHH---HHH-HHcCCCEEEecccccCchhhh
Confidence 02233445667999999886544222 222 245689999888632211110
Q ss_pred HhhhhhhhHHHHHHHHH----------HHhccEEEccCCc-chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHH
Q 004092 258 NYASSGQLELLNDWKKV----------FNRATVVVFPDYV-LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (774)
Q Consensus 258 k~~~~~~~~li~~~~~~----------~~~a~~vv~ps~~-~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~ 326 (774)
..... .+...... ...++.+..+... .......+......+.+ .+.+. ... +.
T Consensus 169 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~----~~ 232 (412)
T 3otg_A 169 RSIEE----EVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRP-VPFAE-------QGD----LP 232 (412)
T ss_dssp HHHHH----HHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCC-CCCCC-------CCC----CC
T ss_pred HHHHH----HHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeec-cCCCC-------CCC----CC
Confidence 00000 01111111 0122222222211 11100000000000001 01000 000 00
Q ss_pred Hh--C-CCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCC-CCchHHHHHHHHHHc
Q 004092 327 KM--G-FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDS-TSNYSVVIEAIAHNL 401 (774)
Q Consensus 327 ~l--g-l~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~-~e~Y~~~L~~la~~l 401 (774)
.+ . .+++..+++++| +.. . ++.+.+.+++..+.+. + +++++++ +.. .+.+.
T Consensus 233 ~~~~~~~~~~~~vlv~~G-~~~-~---~~~~~~~~~~~~l~~~--~-------~~~~~~~g~~~~~~~l~---------- 288 (412)
T 3otg_A 233 AWLSSRDTARPLVYLTLG-TSS-G---GTVEVLRAAIDGLAGL--D-------ADVLVASGPSLDVSGLG---------- 288 (412)
T ss_dssp GGGGGSCTTSCEEEEECT-TTT-C---SCHHHHHHHHHHHHTS--S-------SEEEEECCSSCCCTTCC----------
T ss_pred CccccccCCCCEEEEEcC-CCC-c---CcHHHHHHHHHHHHcC--C-------CEEEEEECCCCChhhhc----------
Confidence 11 1 233444556666 555 4 6666666666665543 2 5677766 332 32221
Q ss_pred CCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC-
Q 004092 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE- 476 (774)
Q Consensus 402 gL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~- 476 (774)
.+.+ +|.+.|++ ++.++|+.||++|.++ .+++++|||++|+|+|+++.++ ..+.+.++..|++++++
T Consensus 289 ~~~~-~v~~~~~~-~~~~~l~~ad~~v~~~------g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~ 360 (412)
T 3otg_A 289 EVPA-NVRLESWV-PQAALLPHVDLVVHHG------GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDN 360 (412)
T ss_dssp CCCT-TEEEESCC-CHHHHGGGCSEEEESC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGG
T ss_pred cCCC-cEEEeCCC-CHHHHHhcCcEEEECC------chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCccc
Confidence 3556 89999999 8999999999999765 3579999999999999977654 66778777789999987
Q ss_pred -CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004092 477 -NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLEN 527 (774)
Q Consensus 477 -d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ 527 (774)
|+++|+++|.++++| ++.+++|++.+++.++.++++++++.+.+++..
T Consensus 361 ~~~~~l~~ai~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 361 ISPDSVSGAAKRLLAE---ESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp CCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 899999999999999 999999999999999889999999998888753
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.77 E-value=5.9e-18 Score=188.49 Aligned_cols=330 Identities=12% Similarity=0.110 Sum_probs=206.6
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCc--chhhhhhcCcc-EEEccc-------------
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDGR--AHEVWRNIGVP-VAILQT------------- 203 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~-G~eV~V~t~~~~~--~~~~~~~~gi~-i~~l~~------------- 203 (774)
..+++||++|++.-. .-..+..+.++|++. |+++.++..+..- ....++.+++. -+.+..
T Consensus 22 ~~~m~ki~~v~Gtr~---~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 98 (396)
T 3dzc_A 22 SNAMKKVLIVFGTRP---EAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGVTSK 98 (396)
T ss_dssp --CCEEEEEEECSHH---HHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHH
T ss_pred hCCCCeEEEEEeccH---hHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCCCceeeecCCCCCCHHHHHHH
Confidence 344578988887532 234557788999887 7888766554321 22233445552 122221
Q ss_pred -chhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHH-HHhccEE
Q 004092 204 -GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKV-FNRATVV 281 (774)
Q Consensus 204 -~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~-~~~a~~v 281 (774)
...+.++++..+||+||++......+...+.+ ...++|++...++...+.. + ...... ..+.. ...++.+
T Consensus 99 ~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa-~~~~IPv~h~~ag~rs~~~---~-~~~~~~---~~r~~~~~~a~~~ 170 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPDVVLVHGDTATTFAASLAA-YYQQIPVGHVEAGLRTGNI---Y-SPWPEE---GNRKLTAALTQYH 170 (396)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHH-HTTTCCEEEETCCCCCSCT---T-SSTTHH---HHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCchhHHHHHHHH-HHhCCCEEEEECCcccccc---c-cCCcHH---HHHHHHHHhcCEE
Confidence 12345567779999999998766323333333 4678997643332111100 0 000011 11121 2345655
Q ss_pred EccCCcc--hhhcccCCCCCEEEeCCCCCCcccccccC--c-hh-hHHHHHHhC-CCCCCEEEEEEeccc-ccccccccH
Q 004092 282 VFPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNM--D-LY-NDTVRVKMG-FKPDDLVIAIVGTQF-MYRGLWLEH 353 (774)
Q Consensus 282 v~ps~~~--~~i~~~v~~~ki~vIpg~gvd~~~~~~~~--~-~~-k~~lR~~lg-l~~~~~vIl~vGsrl-~~~KgiKg~ 353 (774)
.+++... .....+++.+++.++.+..+|...+.... . .. +..+++++| +++++.+++..|+|. ... |++
T Consensus 171 ~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~---~~~ 247 (396)
T 3dzc_A 171 FAPTDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFG---GGF 247 (396)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCT---THH
T ss_pred ECCCHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccch---hHH
Confidence 5565542 23345666778888875444532111100 0 00 256778888 466566666666564 344 678
Q ss_pred HHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcC
Q 004092 354 ALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGS 431 (774)
Q Consensus 354 ~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS 431 (774)
+.+++|+..+.+++|+ +++++.+|+. ....+.+++. ++..+ +|.++++. .++..+|+.||++|.+|
T Consensus 248 ~~ll~A~~~l~~~~~~-------~~~v~~~g~~-~~~~~~l~~~---~~~~~-~v~~~~~lg~~~~~~l~~~ad~vv~~S 315 (396)
T 3dzc_A 248 ERICQALITTAEQHPE-------CQILYPVHLN-PNVREPVNKL---LKGVS-NIVLIEPQQYLPFVYLMDRAHIILTDS 315 (396)
T ss_dssp HHHHHHHHHHHHHCTT-------EEEEEECCBC-HHHHHHHHHH---TTTCT-TEEEECCCCHHHHHHHHHHCSEEEESC
T ss_pred HHHHHHHHHHHHhCCC-------ceEEEEeCCC-hHHHHHHHHH---HcCCC-CEEEeCCCCHHHHHHHHHhcCEEEECC
Confidence 8999999999988888 9998875432 1223333332 34445 79998876 58889999999999998
Q ss_pred ccCcCCccHHHHHHHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 004092 432 FLEEQTFPEILVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRS 508 (774)
Q Consensus 432 ~~E~qGfp~~llEAMA~G~PVIat-d~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ 508 (774)
| + +.+|||++|+|||++ +.++.+|++.+|. +++++. |+++++++|.++++| ++.+++|++++..+
T Consensus 316 -----G-g-~~~EA~a~G~PvV~~~~~~~~~e~v~~G~-~~lv~~-d~~~l~~ai~~ll~d---~~~~~~m~~~~~~~ 381 (396)
T 3dzc_A 316 -----G-G-IQEEAPSLGKPVLVMRETTERPEAVAAGT-VKLVGT-NQQQICDALSLLLTD---PQAYQAMSQAHNPY 381 (396)
T ss_dssp -----S-G-GGTTGGGGTCCEEECCSSCSCHHHHHHTS-EEECTT-CHHHHHHHHHHHHHC---HHHHHHHHTSCCTT
T ss_pred -----c-c-HHHHHHHcCCCEEEccCCCcchHHHHcCc-eEEcCC-CHHHHHHHHHHHHcC---HHHHHHHhhccCCC
Confidence 3 3 338999999999998 7888889988874 788765 899999999999999 99999998765443
No 32
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.76 E-value=1.6e-17 Score=185.47 Aligned_cols=340 Identities=12% Similarity=0.062 Sum_probs=205.7
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHc--CCeEEEEEcCCC--cchhhhhhcCccE-EEccc-------------
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREI--GYAIQVYSLEDG--RAHEVWRNIGVPV-AILQT------------- 203 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~--G~eV~V~t~~~~--~~~~~~~~~gi~i-~~l~~------------- 203 (774)
++++||++|++.-. + -..+..+.++|++. |+++.++..+.. -....++.+++.. ..+..
T Consensus 25 m~~~kI~~v~Gtr~--~-~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~~~ 101 (403)
T 3ot5_A 25 MAKIKVMSIFGTRP--E-AIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSR 101 (403)
T ss_dssp -CCEEEEEEECSHH--H-HHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTTCCCSEECCCCC-CCCHHHHHHH
T ss_pred cccceEEEEEecCh--h-HHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcCCCCCcccccCCCCCCHHHHHHH
Confidence 44578999887532 2 33457788999987 688876665432 2223344555521 22221
Q ss_pred -chhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHH-HHhccEE
Q 004092 204 -GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKV-FNRATVV 281 (774)
Q Consensus 204 -~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~-~~~a~~v 281 (774)
...+.++++..+||+|+++......+...+.+ ...++|++....+...+.. + ...... ..+.. -..++.+
T Consensus 102 ~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA-~~~~IPv~h~~aglrs~~~---~-~~~p~~---~~r~~~~~~a~~~ 173 (403)
T 3ot5_A 102 VMNGINEVIAAENPDIVLVHGDTTTSFAAGLAT-FYQQKMLGHVEAGLRTWNK---Y-SPFPEE---MNRQLTGVMADIH 173 (403)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHH-HHTTCEEEEESCCCCCSCT---T-SSTTHH---HHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHcCCCEEEEECCchhHHHHHHHH-HHhCCCEEEEECCcccccc---c-cCCcHH---HHHHHHHHhcCEE
Confidence 12345567779999999998765323333333 3567997643322101100 0 000011 11111 1234555
Q ss_pred EccCCc--chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEeccccc-ccccccHHHHHH
Q 004092 282 VFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMY-RGLWLEHALILR 358 (774)
Q Consensus 282 v~ps~~--~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~-~KgiKg~~lLLe 358 (774)
..++.. ......+++.+++.++.+.++|...+... ...+...++++ +++.+++..++|... + ++++.+++
T Consensus 174 ~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~-~~~~~~~~~~l---~~~~~vlv~~~r~~~~~---~~l~~ll~ 246 (403)
T 3ot5_A 174 FSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQ-KDYHHPILENL---GDNRLILMTAHRRENLG---EPMQGMFE 246 (403)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSC-TTCCCHHHHSC---TTCEEEEECCCCHHHHT---THHHHHHH
T ss_pred ECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhh-hhcchHHHHhc---cCCCEEEEEeCcccccC---cHHHHHHH
Confidence 555444 22344567777888887655554222111 11122344554 334455444546432 4 66889999
Q ss_pred HHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcC
Q 004092 359 ALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQ 436 (774)
Q Consensus 359 A~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~q 436 (774)
|+..+.+++|+ +++++.+|+.. ...+.+++. ++..+ +|.++++. .++..+|+.||++|.+|
T Consensus 247 a~~~l~~~~~~-------~~~v~~~~~~~-~~~~~l~~~---~~~~~-~v~l~~~l~~~~~~~l~~~ad~vv~~S----- 309 (403)
T 3ot5_A 247 AVREIVESRED-------TELVYPMHLNP-AVREKAMAI---LGGHE-RIHLIEPLDAIDFHNFLRKSYLVFTDS----- 309 (403)
T ss_dssp HHHHHHHHCTT-------EEEEEECCSCH-HHHHHHHHH---HTTCT-TEEEECCCCHHHHHHHHHHEEEEEECC-----
T ss_pred HHHHHHHhCCC-------ceEEEecCCCH-HHHHHHHHH---hCCCC-CEEEeCCCCHHHHHHHHHhcCEEEECC-----
Confidence 99999988888 99998865321 122333332 34444 79999987 48999999999999887
Q ss_pred CccHHHHHHHHcCCCEEEc-CCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHH
Q 004092 437 TFPEILVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL 515 (774)
Q Consensus 437 Gfp~~llEAMA~G~PVIat-d~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~ 515 (774)
|.+.+|||++|+|||++ +.++.+|.+.+| +|++++. |+++++++|.++++| ++.+++|++++..+......+
T Consensus 310 --Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d~~~l~~ai~~ll~~---~~~~~~m~~~~~~~g~~~aa~ 382 (403)
T 3ot5_A 310 --GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-NKENLIKEALDLLDN---KESHDKMAQAANPYGDGFAAN 382 (403)
T ss_dssp --HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-CHHHHHHHHHHHHHC---HHHHHHHHHSCCTTCCSCHHH
T ss_pred --ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-CHHHHHHHHHHHHcC---HHHHHHHHhhcCcccCCcHHH
Confidence 22338999999999998 778888888776 7998876 899999999999999 999999987655443334444
Q ss_pred HHHHHHHH
Q 004092 516 ETIEGYAM 523 (774)
Q Consensus 516 ~~a~~y~~ 523 (774)
++++...+
T Consensus 383 rI~~~l~~ 390 (403)
T 3ot5_A 383 RILAAIKS 390 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45444433
No 33
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.71 E-value=2.8e-15 Score=167.41 Aligned_cols=162 Identities=13% Similarity=0.082 Sum_probs=117.2
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEE-EEEe-CCCCCchHHHHHHHHHHcCCCCccEEE
Q 004092 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKV-MILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (774)
Q Consensus 333 ~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~L-vIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~f 410 (774)
+.++++++| +.. .++.+.+..+++++..+ ++ +++ +++| |+..+. + + .+++ +|.+
T Consensus 232 ~~~v~v~~G-s~~-~~~~~~~~~~~~~l~~~----~~-------~~~~~~~G~~~~~~~----l----~--~~~~-~v~~ 287 (430)
T 2iyf_A 232 EKVVLVSLG-SAF-TKQPAFYRECVRAFGNL----PG-------WHLVLQIGRKVTPAE----L----G--ELPD-NVEV 287 (430)
T ss_dssp SEEEEEECT-TTC-C-CHHHHHHHHHHHTTC----TT-------EEEEEECC---CGGG----G----C--SCCT-TEEE
T ss_pred CCeEEEEcC-CCC-CCcHHHHHHHHHHHhcC----CC-------eEEEEEeCCCCChHH----h----c--cCCC-CeEE
Confidence 445677778 554 32223344444444322 33 677 4667 554321 1 1 3555 8999
Q ss_pred ccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC--CHHHHHHH
Q 004092 411 MAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKALTHI 484 (774)
Q Consensus 411 lG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~--d~e~La~a 484 (774)
.|+.++. ++|+.||++|..+ | .++++|||++|+|+|+++.++ ..+.+.+...|++++.+ |+++|+++
T Consensus 288 ~~~~~~~-~~l~~ad~~v~~~-----G-~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~ 360 (430)
T 2iyf_A 288 HDWVPQL-AILRQADLFVTHA-----G-AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRET 360 (430)
T ss_dssp ESSCCHH-HHHTTCSEEEECC-----C-HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHH
T ss_pred EecCCHH-HHhhccCEEEECC-----C-ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHH
Confidence 9999777 8999999999864 3 479999999999999998765 35566666779999876 89999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004092 485 ILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENV 528 (774)
Q Consensus 485 I~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~l 528 (774)
|.++++| ++.++++++.+++..+..+++++++.+.+++++.
T Consensus 361 i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 361 ALALVDD---PEVARRLRRIQAEMAQEGGTRRAADLIEAELPAR 401 (430)
T ss_dssp HHHHHHC---HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC-
T ss_pred HHHHHcC---HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcc
Confidence 9999999 9999999999998887788888888877766543
No 34
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.71 E-value=2.6e-16 Score=174.17 Aligned_cols=321 Identities=10% Similarity=0.033 Sum_probs=181.8
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc------------------
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------------------ 204 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~------------------ 204 (774)
.++||+++... ..|....+..|+++|.++||+|.|++... ........|+++..+...
T Consensus 14 ~~MrIl~~~~~--~~gh~~~~~~La~~L~~~GheV~v~~~~~--~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
T 4fzr_A 14 SHMRILVIAGC--SEGFVMPLVPLSWALRAAGHEVLVAASEN--MGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTM 89 (398)
T ss_dssp -CCEEEEECCS--SHHHHGGGHHHHHHHHHTTCEEEEEEEGG--GHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCC
T ss_pred CceEEEEEcCC--CcchHHHHHHHHHHHHHCCCEEEEEcCHH--HHHHHHhCCCeeEecCCccchHhhhhhhccCccccc
Confidence 45789888764 45666778899999999999999998632 333444556555444310
Q ss_pred -----------------------hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhh
Q 004092 205 -----------------------REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYAS 261 (774)
Q Consensus 205 -----------------------~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~ 261 (774)
..+...++..+||+||+++....+.+.. . ..++|+|.+.|+............
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a---~-~~giP~v~~~~~~~~~~~~~~~~~ 165 (398)
T 4fzr_A 90 PREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVA---A-TLGIPWIEQSIRLASPELIKSAGV 165 (398)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHH---H-HHTCCEEEECCSSCCCHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHH---H-hhCCCEEEeccCCCCchhhhHHHH
Confidence 1233445668999999875433222222 1 345899998887322211111110
Q ss_pred hhhhHHHHHHHHHHHhc-----cEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccC--chhhHHHHHHhCCCCCC
Q 004092 262 SGQLELLNDWKKVFNRA-----TVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNM--DLYNDTVRVKMGFKPDD 334 (774)
Q Consensus 262 ~~~~~li~~~~~~~~~a-----~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~--~~~k~~lR~~lgl~~~~ 334 (774)
..... ....+... +..... ....+.... +.+.+...+..+. ........ ...+++.
T Consensus 166 ~~l~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 228 (398)
T 4fzr_A 166 GELAP----ELAELGLTDFPDPLLSIDV------CPPSMEAQP-----KPGTTKMRYVPYNGRNDQVPSWV--FEERKQP 228 (398)
T ss_dssp HHTHH----HHHTTTCSSCCCCSEEEEC------SCGGGC---------CCCEECCCCCCCCSSCCCCHHH--HSCCSSC
T ss_pred HHHHH----HHHHcCCCCCCCCCeEEEe------CChhhCCCC-----CCCCCCeeeeCCCCCCCCCchhh--hcCCCCC
Confidence 10011 00001100 111110 001111000 0000000000000 00000001 1123456
Q ss_pred EEEEEEeccccccc-------ccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCc
Q 004092 335 LVIAIVGTQFMYRG-------LWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLG 406 (774)
Q Consensus 335 ~vIl~vGsrl~~~K-------giKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~ 406 (774)
.+++++| +....+ +.+.+..+++|+..+ + ++++++| ++.. +.++ .+.+
T Consensus 229 ~v~v~~G-~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~-------~~~v~~~~~~~~----~~l~------~~~~- 284 (398)
T 4fzr_A 229 RLCLTFG-TRVPLPNTNTIPGGLSLLQALSQELPKL-----G-------FEVVVAVSDKLA----QTLQ------PLPE- 284 (398)
T ss_dssp EEECC-----------------CCSHHHHHHHGGGG-----T-------CEEEECCCC------------------CCT-
T ss_pred EEEEEcc-CcccccccccccchHHHHHHHHHHHHhC-----C-------CEEEEEeCCcch----hhhc------cCCC-
Confidence 6777788 554433 346677777777654 2 6888888 4332 2221 3566
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC----cccccccccCccEEEEcCC--CHHH
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL----SNIRKYVDDRVNGYLFPKE--NIKA 480 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~----ggi~EiV~dg~~G~Lv~~~--d~e~ 480 (774)
+|.+.|+. ++..++..||++|.. |.+++++|||++|+|+|+.+. .+..+.+.+...|++++++ |+++
T Consensus 285 ~v~~~~~~-~~~~ll~~ad~~v~~------gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~ 357 (398)
T 4fzr_A 285 GVLAAGQF-PLSAIMPACDVVVHH------GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVES 357 (398)
T ss_dssp TEEEESCC-CHHHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------C
T ss_pred cEEEeCcC-CHHHHHhhCCEEEec------CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHH
Confidence 89999998 689999999999954 347899999999999999554 4666778788889999876 7899
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004092 481 LTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (774)
Q Consensus 481 La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~ 522 (774)
|+++|.++++| ++.+++|++.+++.....+++++++.++
T Consensus 358 l~~ai~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 358 VLAACARIRDD---SSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHHHHC---THHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHhC---HHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 99999999999 9999999999999888889988887654
No 35
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.70 E-value=5.2e-16 Score=171.00 Aligned_cols=325 Identities=13% Similarity=0.101 Sum_probs=191.7
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEc-cc-------------------
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAIL-QT------------------- 203 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l-~~------------------- 203 (774)
++||+++... .+|....+..++++|.++||+|.+++... ........|+++..+ ..
T Consensus 1 ~MrIl~~~~~--~~gh~~~~~~la~~L~~~GheV~v~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (391)
T 3tsa_A 1 HMRVLVVPLP--YPTHLMAMVPLCWALQASGHEVLIAAPPE--LQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAF 76 (391)
T ss_dssp CCEEEEECCS--CHHHHHTTHHHHHHHHHTTCEEEEEECHH--HHHHHHHBTCEEEEC--------------CCSCCGGG
T ss_pred CcEEEEEcCC--CcchhhhHHHHHHHHHHCCCEEEEecChh--hHHHHHhCCCceeeecCCccchhhhhhhccccccccc
Confidence 3688888765 56777778899999999999999998532 223334455554444 11
Q ss_pred --------------------------chhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhh-H
Q 004092 204 --------------------------GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR-A 256 (774)
Q Consensus 204 --------------------------~~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~-~ 256 (774)
...+..+++..+||+||+++... ...+.. ...++|++.+.|+...... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~---~~~~aa-~~~giP~v~~~~~~~~~~~~~ 152 (391)
T 3tsa_A 77 GQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCAL---IGRVLG-GLLDLPVVLHRWGVDPTAGPF 152 (391)
T ss_dssp GCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCH---HHHHHH-HHTTCCEEEECCSCCCTTTHH
T ss_pred ccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchh---HHHHHH-HHhCCCEEEEecCCccccccc
Confidence 22334556678999999985433 222232 2467999998886322211 0
Q ss_pred HHhhhhhhhHHHHHHHHHHHhc-----cEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCC
Q 004092 257 RNYASSGQLELLNDWKKVFNRA-----TVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFK 331 (774)
Q Consensus 257 ~k~~~~~~~~li~~~~~~~~~a-----~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~ 331 (774)
...... . +......+... +....................+..+|..+ . ... .......
T Consensus 153 ~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~---~~~--------~~~~~~~ 215 (391)
T 3tsa_A 153 SDRAHE---L-LDPVCRHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYNG--S---GAF--------PAWGAAR 215 (391)
T ss_dssp HHHHHH---H-HHHHHHHTTSSSSCCCSEEEECSCGGGSCTTSCCCEECCCCCCCC--C---EEC--------CGGGSSC
T ss_pred cchHHH---H-HHHHHHHcCCCCCCCCceEEEecChhhcCCCCCccCCeeeecCCC--C---cCC--------CchhhcC
Confidence 000000 0 11111111111 11111100000000000000001111000 0 000 0111122
Q ss_pred C-CCEEEEEEecccccccccccH-HHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccE
Q 004092 332 P-DDLVIAIVGTQFMYRGLWLEH-ALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVV 408 (774)
Q Consensus 332 ~-~~~vIl~vGsrl~~~KgiKg~-~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V 408 (774)
+ +..+++++| +.... ++. ..+++++... .+.|+ ++++++| ++..+... ++.+ +|
T Consensus 216 ~~~~~vlv~~G-~~~~~---~~~~~~~~~~~~~~-~~~p~-------~~~v~~~~~~~~~~l~----------~~~~-~v 272 (391)
T 3tsa_A 216 TSARRVCICMG-RMVLN---ATGPAPLLRAVAAA-TELPG-------VEAVIAVPPEHRALLT----------DLPD-NA 272 (391)
T ss_dssp CSSEEEEEECC-HHHHH---HHCSHHHHHHHHHH-HTSTT-------EEEEEECCGGGGGGCT----------TCCT-TE
T ss_pred CCCCEEEEEcC-CCCCc---ccchHHHHHHHHHh-ccCCC-------eEEEEEECCcchhhcc----------cCCC-CE
Confidence 3 344555567 54332 333 5557777666 66667 8999998 43321111 4555 89
Q ss_pred EEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC----cccccccccCccEEEEcC----CCHHH
Q 004092 409 KHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL----SNIRKYVDDRVNGYLFPK----ENIKA 480 (774)
Q Consensus 409 ~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~----ggi~EiV~dg~~G~Lv~~----~d~e~ 480 (774)
.+.|+. +...++..||++|.. |.+++++|||++|+|+|+.+. .+..+.+.+...|.++++ .|+++
T Consensus 273 ~~~~~~-~~~~ll~~ad~~v~~------~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~ 345 (391)
T 3tsa_A 273 RIAESV-PLNLFLRTCELVICA------GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQ 345 (391)
T ss_dssp EECCSC-CGGGTGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHH
T ss_pred EEeccC-CHHHHHhhCCEEEeC------CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHH
Confidence 999987 445677999999964 345789999999999999544 445667777778999987 78999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004092 481 LTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (774)
Q Consensus 481 La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e 526 (774)
|+++|.++++| ++.+++|++.+++......++++++.+.+++.
T Consensus 346 l~~ai~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 346 FTDSIATVLGD---TGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHHHTC---THHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHHcC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999 99999999999988888899888887766543
No 36
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.68 E-value=4.5e-15 Score=164.30 Aligned_cols=324 Identities=11% Similarity=0.031 Sum_probs=190.3
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc-----------------
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG----------------- 204 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~----------------- 204 (774)
.+.+||+++... .+|....+..|+++|.++||+|.|++. .........|+++..+...
T Consensus 18 ~~~MrIl~~~~~--~~Ghv~~~~~La~~L~~~GheV~v~~~---~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (398)
T 3oti_A 18 GRHMRVLFVSSP--GIGHLFPLIQLAWGFRTAGHDVLIAVA---EHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRF 92 (398)
T ss_dssp -CCCEEEEECCS--SHHHHGGGHHHHHHHHHTTCEEEEEES---SCHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHH
T ss_pred hhcCEEEEEcCC--CcchHhHHHHHHHHHHHCCCEEEEecc---chHHHHHhCCCeeEecCCccCHHHHhhhcccCCccc
Confidence 345799998864 556677789999999999999999997 3333444556555544321
Q ss_pred ---------------------------hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHH
Q 004092 205 ---------------------------REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRAR 257 (774)
Q Consensus 205 ---------------------------~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~ 257 (774)
..+...++..+||+|+++.....+. +++ ...++|+|.+.++........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~---~aA-~~~giP~v~~~~~~~~~~~~~ 168 (398)
T 3oti_A 93 AETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGL---LAA-DRAGVPAVQRNQSAWRTRGMH 168 (398)
T ss_dssp HHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHH---HHH-HHHTCCEEEECCTTCCCTTHH
T ss_pred cccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHH---HHH-HHcCCCEEEEeccCCCccchh
Confidence 1234445668999999864433212 222 245689998887632211111
Q ss_pred HhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhC-CCCCCEE
Q 004092 258 NYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMG-FKPDDLV 336 (774)
Q Consensus 258 k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lg-l~~~~~v 336 (774)
.............+............+...............+.++|..+.. ... ..+. .+++..+
T Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~v 235 (398)
T 3oti_A 169 RSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA-----VLG--------DRLPPVPARPEV 235 (398)
T ss_dssp HHHHTTCHHHHHHTTCCCCCCSEEECSSCGGGGTTSCCCSBCCCCCCCCCCE-----ECC--------SSCCCCCSSCEE
T ss_pred hHHHHHHHHHHHHcCCCCCCCCeEEEeCCHHHCCCCCCCCCCccccCCCCCc-----CCc--------hhhhcCCCCCEE
Confidence 1111111111110000000001111111110000000000011112210100 000 0111 1234556
Q ss_pred EEEEecccccc-cccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc
Q 004092 337 IAIVGTQFMYR-GLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE 414 (774)
Q Consensus 337 Il~vGsrl~~~-KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~ 414 (774)
++++| +.... ++.+.+..+++++..+ + ++++++| ++..+... .+++ +|.+.|+.
T Consensus 236 ~v~~G-~~~~~~~~~~~~~~~~~~l~~~-----~-------~~~v~~~g~~~~~~l~----------~~~~-~v~~~~~~ 291 (398)
T 3oti_A 236 AITMG-TIELQAFGIGAVEPIIAAAGEV-----D-------ADFVLALGDLDISPLG----------TLPR-NVRAVGWT 291 (398)
T ss_dssp EECCT-TTHHHHHCGGGHHHHHHHHHTS-----S-------SEEEEECTTSCCGGGC----------SCCT-TEEEESSC
T ss_pred EEEcC-CCccccCcHHHHHHHHHHHHcC-----C-------CEEEEEECCcChhhhc----------cCCC-cEEEEccC
Confidence 67777 55332 2335565666666543 2 6888888 44332111 4566 89999999
Q ss_pred ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEE----cCCcccc--cccccCccEEEEcCC--CHHHHHHHHH
Q 004092 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA----PDLSNIR--KYVDDRVNGYLFPKE--NIKALTHIIL 486 (774)
Q Consensus 415 ~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa----td~ggi~--EiV~dg~~G~Lv~~~--d~e~La~aI~ 486 (774)
++.++|..||++|.. |.+++++|||++|+|+|+ .+..+.. +.+.+...|++++++ +++.++
T Consensus 292 -~~~~ll~~ad~~v~~------~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~---- 360 (398)
T 3oti_A 292 -PLHTLLRTCTAVVHH------GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR---- 360 (398)
T ss_dssp -CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----
T ss_pred -CHHHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----
Confidence 899999999999964 346789999999999999 4556777 888887889999875 566665
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004092 487 QVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLL 525 (774)
Q Consensus 487 ~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~ 525 (774)
++++| +..+++|++.+++......++++++.+.+++
T Consensus 361 ~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 RLIGD---ESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp HHHHC---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHcC---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 88899 9999999999999888899999998877664
No 37
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.67 E-value=4.5e-15 Score=161.75 Aligned_cols=303 Identities=11% Similarity=0.002 Sum_probs=193.5
Q ss_pred ccCCCCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC--cchhhhhhcCccEEEcccchhHHHHh-hh
Q 004092 137 LHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG--RAHEVWRNIGVPVAILQTGREKASFV-NW 213 (774)
Q Consensus 137 ~~r~~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~--~~~~~~~~~gi~i~~l~~~~~l~~~i-~~ 213 (774)
+.|-+.|+.-|.-..+.-...++...-....+.+.+.|++-.-+...+. +..... .+.+...+ ..
T Consensus 5 ~~~~~~m~~~i~~~~~~~~~~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 72 (339)
T 3rhz_A 5 LRRQACMRVYITNINGQSIQSTAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSESEL------------SKRLDGIVAGL 72 (339)
T ss_dssp -----CCCEEEEEEESSCTTCHHHHHHHHHHHHHHHTTCEEEEEECCCGGGSCHHHH------------HHHHHHHTTTC
T ss_pred HHHHhhhheeeecccCccccchHHHHHHHHHHHHHHCCCeEEEeeccccccccHHHH------------HHHHHHHHhcC
Confidence 3455677777777777666778888888889999999997655543221 111110 01111222 24
Q ss_pred cCccEEEEcCCchhH-HH-HHHHhC-CCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcch-
Q 004092 214 LNYDGILVNSLEAKV-VI-SNIMQE-PFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP- 289 (774)
Q Consensus 214 ~~~DIIhvhs~~~~~-~l-~~Ll~~-~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~- 289 (774)
.++|+|++++|.... .+ ..++.. +..++|+|+.+|+-.... . ... ..+.......++.++.+++++....
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~-~---~~~--~~~~~~E~~~y~~aD~Ii~~S~~~~~ 146 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLM-F---SGN--FYLMDRTIAYYNKADVVVAPSQKMID 146 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHH-C---GGG--GGGHHHHHHHHTTCSEEEESCHHHHH
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhh-C---ccc--hhhHHHHHHHHHHCCEEEECCHHHHH
Confidence 679999999987421 12 222221 234899999999732111 0 111 1122244557889999988877632
Q ss_pred -hhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcc
Q 004092 290 -MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (774)
Q Consensus 290 -~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p 368 (774)
+...+++..++.+++.. +.. .... ...+.++++++|+| ++... .. ++ .+ .+
T Consensus 147 ~l~~~G~~~~ki~~~~~~--~~~--~~~~----------~~~~~~~~~i~yaG-~l~k~---~~----L~---~l---~~ 198 (339)
T 3rhz_A 147 KLRDFGMNVSKTVVQGMW--DHP--TQAP----------MFPAGLKREIHFPG-NPERF---SF----VK---EW---KY 198 (339)
T ss_dssp HHHHTTCCCSEEEECCSC--CCC--CCCC----------CCCCEEEEEEEECS-CTTTC---GG----GG---GC---CC
T ss_pred HHHHcCCCcCceeecCCC--Ccc--Cccc----------ccccCCCcEEEEeC-Ccchh---hH----HH---hC---CC
Confidence 23445655666554421 110 0000 01233457899999 66642 11 12 12 24
Q ss_pred cCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcC-c-----cCcCCcc
Q 004092 369 VENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGS-F-----LEEQTFP 439 (774)
Q Consensus 369 ~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS-~-----~E~qGfp 439 (774)
+ ++|+|+| |+.. .++ +|.|+|++ ++++.+|+.+|+.+.+. . ... .+|
T Consensus 199 ~-------~~f~ivG~G~~~--------------~l~--nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~-~~P 254 (339)
T 3rhz_A 199 D-------IPLKVYTWQNVE--------------LPQ--NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSL-YCS 254 (339)
T ss_dssp S-------SCEEEEESCCCC--------------CCT--TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTT-CCC
T ss_pred C-------CeEEEEeCCccc--------------CcC--CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHh-cCh
Confidence 5 9999999 8764 233 59999977 89999999888887751 1 111 469
Q ss_pred HHHHHHHHcCCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHH
Q 004092 440 EILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALE 516 (774)
Q Consensus 440 ~~llEAMA~G~PVIatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~ 516 (774)
.++.||||||+|||+++.++..++|.++.+|++++ +.++++++|..+. ++.+++|+++|++.++++++..
T Consensus 255 ~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~~--~~~e~~~~i~~l~-----~~~~~~m~~na~~~a~~~~~~~ 324 (339)
T 3rhz_A 255 YKLGSFLAAGIPVIVQEGIANQELIENNGLGWIVK--DVEEAIMKVKNVN-----EDEYIELVKNVRSFNPILRKGF 324 (339)
T ss_dssp HHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEES--SHHHHHHHHHHCC-----HHHHHHHHHHHHHHTHHHHTTH
T ss_pred HHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEeC--CHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHhhccH
Confidence 99999999999999999999999999999999997 6899999998863 4578899999998876554433
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.63 E-value=5.3e-14 Score=154.87 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=96.8
Q ss_pred CCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCC-----cccccccccCccEEEEcCC-
Q 004092 403 YPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL-----SNIRKYVDDRVNGYLFPKE- 476 (774)
Q Consensus 403 L~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~-----ggi~EiV~dg~~G~Lv~~~- 476 (774)
+.+ +|.+.|+.++. ++|+.||++|..+ | ..+++|||++|+|+|+.+. .+..+.+.+...|..++.+
T Consensus 279 ~~~-~v~~~~~~~~~-~ll~~ad~~v~~~-----G-~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~ 350 (402)
T 3ia7_A 279 LPP-NVEAHQWIPFH-SVLAHARACLTHG-----T-TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQ 350 (402)
T ss_dssp CCT-TEEEESCCCHH-HHHTTEEEEEECC-----C-HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGG
T ss_pred CCC-cEEEecCCCHH-HHHhhCCEEEECC-----C-HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCC
Confidence 555 89999999777 9999999999765 2 4688999999999996554 3566777777789998876
Q ss_pred -CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004092 477 -NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENV 528 (774)
Q Consensus 477 -d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~l 528 (774)
++++++++|.++++| ++.++++++.+++......++.+++...+++.+.
T Consensus 351 ~~~~~l~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 400 (402)
T 3ia7_A 351 LEPASIREAVERLAAD---SAVRERVRRMQRDILSSGGPARAADEVEAYLGRV 400 (402)
T ss_dssp CSHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhc
Confidence 899999999999999 9999999998888887788889998888887653
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.59 E-value=5.1e-13 Score=148.23 Aligned_cols=332 Identities=14% Similarity=0.069 Sum_probs=188.1
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc------------------
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------------------ 204 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~------------------ 204 (774)
+++||+++... ..|--..+..|++.|.++||+|++++... ........|+++..+...
T Consensus 19 ~m~rIl~~~~~--~~GHv~p~l~La~~L~~~Gh~V~v~~~~~--~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
T 3rsc_A 19 HMAHLLIVNVA--SHGLILPTLTVVTELVRRGHRVSYVTAGG--FAEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVR 94 (415)
T ss_dssp CCCEEEEECCS--CHHHHGGGHHHHHHHHHTTCEEEEEECGG--GHHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCHH
T ss_pred cCCEEEEEeCC--CccccccHHHHHHHHHHCCCEEEEEeCHH--HHHHHHhcCCEEEeccccccccccchhhccccHHHH
Confidence 45788877653 45667788999999999999999999432 333445556666554421
Q ss_pred -------------hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhh--h----hHHHhh-----
Q 004092 205 -------------REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA--T----RARNYA----- 260 (774)
Q Consensus 205 -------------~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~--~----~~~k~~----- 260 (774)
..+...++..+||+|++++... ....++++ ..++|++.+.|+.... + ......
T Consensus 95 ~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~--~~~~~aA~-~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~p 171 (415)
T 3rsc_A 95 PHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPF--IAGQLLAA-RWRRPAVRLSAAFASNEHYSFSQDMVTLAGTIDP 171 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTH--HHHHHHHH-HTTCCEEEEESSCCCCSSCCHHHHHHHHHTCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhh--hHHHHHHH-HhCCCEEEEEecccccCccccccccccccccCCh
Confidence 1223345568999999874333 22233332 4679999988752110 0 000000
Q ss_pred --hhhhhHHHHHHHHHHHh----------c-cEEEccCCc-chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHH
Q 004092 261 --SSGQLELLNDWKKVFNR----------A-TVVVFPDYV-LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (774)
Q Consensus 261 --~~~~~~li~~~~~~~~~----------a-~~vv~ps~~-~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~ 326 (774)
.......+......+.. . +........ ........ ..++.++. ...... ......
T Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~vG-p~~~~~--~~~~~~------- 240 (415)
T 3rsc_A 172 LDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTF-DDRFVFVG-PCFDDR--RFLGEW------- 240 (415)
T ss_dssp GGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGC-CTTEEECC-CCCCCC--GGGCCC-------
T ss_pred hhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccC-CCceEEeC-CCCCCc--ccCcCc-------
Confidence 00000001111111100 0 111111111 11101111 12333331 111100 000000
Q ss_pred HhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEE-e-CCCCCchHHHHHHHHHHcCCC
Q 004092 327 KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMIL-S-GDSTSNYSVVIEAIAHNLHYP 404 (774)
Q Consensus 327 ~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIv-G-G~~~e~Y~~~L~~la~~lgL~ 404 (774)
....++...+++++|+. ... ..+.+..+++++..+ + ++++++ | +...+... .+.
T Consensus 241 ~~~~~~~~~v~v~~Gs~-~~~-~~~~~~~~~~al~~~----~--------~~~v~~~g~~~~~~~l~----------~~~ 296 (415)
T 3rsc_A 241 TRPADDLPVVLVSLGTT-FND-RPGFFRDCARAFDGQ----P--------WHVVMTLGGQVDPAALG----------DLP 296 (415)
T ss_dssp CCCSSCCCEEEEECTTT-SCC-CHHHHHHHHHHHTTS----S--------CEEEEECTTTSCGGGGC----------CCC
T ss_pred cccCCCCCEEEEECCCC-CCC-hHHHHHHHHHHHhcC----C--------cEEEEEeCCCCChHHhc----------CCC
Confidence 00123445566677744 332 012244444444322 1 566664 4 33321111 455
Q ss_pred CccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc----ccccccccCccEEEEcCC--CH
Q 004092 405 LGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDRVNGYLFPKE--NI 478 (774)
Q Consensus 405 ~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g----gi~EiV~dg~~G~Lv~~~--d~ 478 (774)
+ +|.+.++.++. .+|..||++|..+ | ..+++|||++|+|+|+.+.. ...+.+.+...|..++.+ ++
T Consensus 297 ~-~v~~~~~~~~~-~ll~~ad~~v~~~-----G-~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~ 368 (415)
T 3rsc_A 297 P-NVEAHRWVPHV-KVLEQATVCVTHG-----G-MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADG 368 (415)
T ss_dssp T-TEEEESCCCHH-HHHHHEEEEEESC-----C-HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCH
T ss_pred C-cEEEEecCCHH-HHHhhCCEEEECC-----c-HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCH
Confidence 5 89999999776 9999999999765 2 46889999999999995543 355666666679888765 89
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004092 479 KALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLEN 527 (774)
Q Consensus 479 e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ 527 (774)
++++++|.++++| ++.++++++.+.+.......+.+++...+++..
T Consensus 369 ~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 369 DTLLAAVGAVAAD---PALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHHHHHHHTC---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 9999999999999 999999998888888778888888887777653
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.53 E-value=9.3e-13 Score=144.71 Aligned_cols=161 Identities=11% Similarity=0.088 Sum_probs=118.4
Q ss_pred CCCEEEEEEecccccc---c-ccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCcc
Q 004092 332 PDDLVIAIVGTQFMYR---G-LWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGV 407 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~---K-giKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~ 407 (774)
++..+++++| +.... | +.+.+..+++|+..+ + +++++++|... .+.++ ++++ +
T Consensus 209 ~~~~v~v~~G-s~~~~~~~~~~~~~~~~~~~al~~~-----~-------~~~~~~~g~~~---~~~l~------~~~~-~ 265 (384)
T 2p6p_A 209 TRQRVLVTSG-SRVAKESYDRNFDFLRGLAKDLVRW-----D-------VELIVAAPDTV---AEALR------AEVP-Q 265 (384)
T ss_dssp SSCEEEEECS-SSSSCCSSCCCCTTHHHHHHHHHTT-----T-------CEEEEECCHHH---HHHHH------HHCT-T
T ss_pred CCCEEEEECC-CCCccccccccHHHHHHHHHHHhcC-----C-------cEEEEEeCCCC---HHhhC------CCCC-c
Confidence 3455777777 55543 2 346777888888754 2 68888764211 12222 2355 7
Q ss_pred EEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC--CHHHH
Q 004092 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKAL 481 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~--d~e~L 481 (774)
|.+ |+. +..++|..||++|..+ .+++++|||++|+|+|+.+..+ ..+.+.+...|++++++ +++++
T Consensus 266 v~~-~~~-~~~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l 337 (384)
T 2p6p_A 266 ARV-GWT-PLDVVAPTCDLLVHHA------GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAI 337 (384)
T ss_dssp SEE-ECC-CHHHHGGGCSEEEECS------CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHH
T ss_pred eEE-cCC-CHHHHHhhCCEEEeCC------cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHH
Confidence 899 988 4688999999999864 3568999999999999998754 55666666679998864 79999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004092 482 THIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (774)
Q Consensus 482 a~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e 526 (774)
+++|.++++| ++.++++++.+.+....-..+++++...+++.
T Consensus 338 ~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 338 ADSCQELQAK---DTYARRAQDLSREISGMPLPATVVTALEQLAH 379 (384)
T ss_dssp HHHHHHHHHC---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999 99888998888887766677777777666654
No 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.44 E-value=1.6e-11 Score=137.91 Aligned_cols=161 Identities=11% Similarity=0.018 Sum_probs=116.4
Q ss_pred CCEEEEEEecccccc-cccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeC-CCCCchHHHHHHHHHHcCCCCccEEE
Q 004092 333 DDLVIAIVGTQFMYR-GLWLEHALILRALLPLFSEVSVENESNSPIKVMILSG-DSTSNYSVVIEAIAHNLHYPLGVVKH 410 (774)
Q Consensus 333 ~~~vIl~vGsrl~~~-KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG-~~~e~Y~~~L~~la~~lgL~~~~V~f 410 (774)
...+++++|+..... ...+.+..+++|+..+ + +++++++| +..+... ++++ +|.+
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~-------~~~v~~~g~~~~~~l~----------~~~~-~v~~ 323 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGDV-----D-------AEIIATFDAQQLEGVA----------NIPD-NVRT 323 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHTS-----S-------SEEEECCCTTTTSSCS----------SCCS-SEEE
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHcC-----C-------CEEEEEECCcchhhhc----------cCCC-CEEE
Confidence 345667777433210 1226666778888764 2 67777774 3322111 4555 8999
Q ss_pred ccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC--CHHHHHHH
Q 004092 411 MAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKALTHI 484 (774)
Q Consensus 411 lG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~--d~e~La~a 484 (774)
.+++++ .++|..||++|.. |-+++++|||++|+|+|+.+..+ ..+.+.+...|++++.+ ++++++++
T Consensus 324 ~~~~~~-~~ll~~ad~~V~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~ 396 (441)
T 2yjn_A 324 VGFVPM-HALLPTCAATVHH------GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRES 396 (441)
T ss_dssp CCSCCH-HHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHH
T ss_pred ecCCCH-HHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHH
Confidence 999976 7889999999974 34679999999999999998853 45566666679998875 89999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004092 485 ILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (774)
Q Consensus 485 I~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e 526 (774)
|.++++| ++.++++++.+++.......+++++...+++.
T Consensus 397 i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 397 VKRVLDD---PAHRAGAARMRDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHC---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999 99999999988888777788888877766653
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.36 E-value=1.2e-12 Score=145.01 Aligned_cols=338 Identities=8% Similarity=0.047 Sum_probs=197.2
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC---cchh-hhhhcCcc--EEEccc------------ch
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG---RAHE-VWRNIGVP--VAILQT------------GR 205 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~---~~~~-~~~~~gi~--i~~l~~------------~~ 205 (774)
..++++|++. =..-.-+.-+.+.|++. +++.++..+.- .... ..+.++++ -+.+.. ..
T Consensus 9 ~~~~~~v~Gt---Rpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 84 (385)
T 4hwg_A 9 MLKVMTIVGT---RPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLVIE 84 (385)
T ss_dssp CCEEEEEECS---HHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHHHH
T ss_pred hhheeEEEEc---CHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHHHH
Confidence 3556666652 22233456677778776 88777765431 1222 22445552 222221 12
Q ss_pred hHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHH-HhccEEEcc
Q 004092 206 EKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVF-NRATVVVFP 284 (774)
Q Consensus 206 ~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~-~~a~~vv~p 284 (774)
.+.++++..+||+|+++..... .++.+.+ ...++|++ ++++..-. ... .... ..++... ..++.+..+
T Consensus 85 ~l~~~l~~~kPD~Vlv~gd~~~-~~aalaA-~~~~IPv~-h~eaglrs--~~~---~~pe---e~nR~~~~~~a~~~~~~ 153 (385)
T 4hwg_A 85 KVDEVLEKEKPDAVLFYGDTNS-CLSAIAA-KRRKIPIF-HMEAGNRC--FDQ---RVPE---EINRKIIDHISDVNITL 153 (385)
T ss_dssp HHHHHHHHHCCSEEEEESCSGG-GGGHHHH-HHTTCCEE-EESCCCCC--SCT---TSTH---HHHHHHHHHHCSEEEES
T ss_pred HHHHHHHhcCCcEEEEECCchH-HHHHHHH-HHhCCCEE-EEeCCCcc--ccc---cCcH---HHHHHHHHhhhceeecC
Confidence 3456677899999999986543 2233332 35679965 44432100 000 0000 0112211 234444445
Q ss_pred CCc--chhhcccCCCCCEEEeCCCCCCcccccccCchhhHHHHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHH
Q 004092 285 DYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLP 362 (774)
Q Consensus 285 s~~--~~~i~~~v~~~ki~vIpg~gvd~~~~~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~ 362 (774)
+.. ......+++.++++++.+..+|...+. .....+..+++++|+++++.++++.+ +.......+++..+++|+..
T Consensus 154 te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~-~~~~~~~~~~~~lgl~~~~~iLvt~h-r~e~~~~~~~l~~ll~al~~ 231 (385)
T 4hwg_A 154 TEHARRYLIAEGLPAELTFKSGSHMPEVLDRF-MPKILKSDILDKLSLTPKQYFLISSH-REENVDVKNNLKELLNSLQM 231 (385)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCSHHHHHHHH-HHHHHHCCHHHHTTCCTTSEEEEEEC-CC-----CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcCcEEEECCchHHHHHHh-hhhcchhHHHHHcCCCcCCEEEEEeC-CchhcCcHHHHHHHHHHHHH
Confidence 443 223445666778888875444531110 01112445788899987665544444 54321112678889999999
Q ss_pred chhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHc-C-CC-CccEEEccCc--ccHHHHHHHcCEEEEcCccCcCC
Q 004092 363 LFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNL-H-YP-LGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQT 437 (774)
Q Consensus 363 L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~l-g-L~-~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qG 437 (774)
+.+++ + +.+++..++ .+++.++++ + +. ..+|.+.+.. .++..+|+.||++|.+|
T Consensus 232 l~~~~-~-------~~vv~p~~p-------~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S------ 290 (385)
T 4hwg_A 232 LIKEY-N-------FLIIFSTHP-------RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS------ 290 (385)
T ss_dssp HHHHH-C-------CEEEEEECH-------HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC------
T ss_pred HHhcC-C-------eEEEEECCh-------HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC------
Confidence 87765 5 777765553 134455544 3 21 1279998765 47899999999999777
Q ss_pred ccHHHHHHHHcCCCEEEcCCcc-cccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HHhcCHH
Q 004092 438 FPEILVKALCFRKPIIAPDLSN-IRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRS-VKNLMAL 515 (774)
Q Consensus 438 fp~~llEAMA~G~PVIatd~gg-i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~-ak~fs~~ 515 (774)
|.+..||+++|+|||+.+... .+|.+..| ++++++. |++++++++.++++| +..+++|++++..+ ......+
T Consensus 291 -Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d~~~i~~ai~~ll~d---~~~~~~m~~~~~~~~g~g~aa~ 364 (385)
T 4hwg_A 291 -GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-KAERVLQAVKTITEE---HDNNKRTQGLVPDYNEAGLVSK 364 (385)
T ss_dssp -TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-SHHHHHHHHHHHHTT---CBTTBCCSCCCHHHHTCCCHHH
T ss_pred -ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-CHHHHHHHHHHHHhC---hHHHHHhhccCCCCCCCChHHH
Confidence 235799999999999976543 56777776 5777754 899999999999999 87777776655555 4445555
Q ss_pred HHHHHHHHHH
Q 004092 516 ETIEGYAMLL 525 (774)
Q Consensus 516 ~~a~~y~~L~ 525 (774)
++++...+++
T Consensus 365 rI~~~l~~~~ 374 (385)
T 4hwg_A 365 KILRIVLSYV 374 (385)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5655555544
No 43
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.32 E-value=2.5e-09 Score=119.08 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=88.3
Q ss_pred CCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC-
Q 004092 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE- 476 (774)
Q Consensus 402 gL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~- 476 (774)
.+++ +|.+.++..+. ++|..||++|..+ -.++++|||++|+|+|+.+..+ ..+.+.+...|+.++.+
T Consensus 302 ~~~~-~v~~~~~~~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~ 373 (424)
T 2iya_A 302 EVPP-NVEVHQWVPQL-DILTKASAFITHA------GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQ 373 (424)
T ss_dssp SCCT-TEEEESSCCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGG
T ss_pred cCCC-CeEEecCCCHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCC
Confidence 3555 89999999777 8999999998643 3579999999999999998753 33455555678888754
Q ss_pred -CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004092 477 -NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (774)
Q Consensus 477 -d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e 526 (774)
++++++++|.++++| ++.++++++.+.+....-..+++++...+++.
T Consensus 374 ~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 374 VTAEKLREAVLAVASD---PGVAERLAAVRQEIREAGGARAAADILEGILA 421 (424)
T ss_dssp CCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 899999999999999 88888888777766555566666666665554
No 44
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.23 E-value=1.7e-10 Score=133.06 Aligned_cols=310 Identities=7% Similarity=-0.053 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccc------hhHHHHhhhcCccEEEEcCCchhHHHHHHHh
Q 004092 162 QMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------REKASFVNWLNYDGILVNSLEAKVVISNIMQ 235 (774)
Q Consensus 162 ~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~------~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~ 235 (774)
....+... .+..++|..++ .... ....+...-.+..+... ..+...|...++||++--+.... ....++.
T Consensus 293 ~~~~~l~~-dR~~FEV~~Ys-~~~~-D~~tr~~~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~-~~~i~~a 368 (631)
T 3q3e_A 293 THSTSMIA-AREHFYLIGLG-SPSV-DQAGQEVFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMD-MTTIFAS 368 (631)
T ss_dssp HHHHHHHH-HTTTSEEEEEE-CTTS-CHHHHTTSSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSS-HHHHHHT
T ss_pred HHHHHHHh-hhhcEEEEEEe-CCCC-CHHHHhcCcEEEECCCCCccccHHHHHHHHHhcCCCEEEECCCCCC-chhHHHH
Confidence 33334444 46678988888 4322 11222222234444433 35667788899999887544332 2222232
Q ss_pred CCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCcchhhcccCCCCCEEEeCCCCCCcccccc
Q 004092 236 EPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADT 315 (774)
Q Consensus 236 ~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~~~~i~~~v~~~ki~vIpg~gvd~~~~~~ 315 (774)
..+-.|+-.++-|.+.-.-+...-....+... .+ ....-.+++..+|++.........
T Consensus 369 -a~RpAPVQvs~lGyp~TTGl~~iDY~i~D~~~--------------~~-------~~~~ysEklirLP~~~~~~~p~~~ 426 (631)
T 3q3e_A 369 -NTRLAPIQAIALGHPATTHSDFIEYVIVEDDY--------------VG-------SEECFSETLLRLPKDALPYVPSAL 426 (631)
T ss_dssp -TSCCSSEEEEECSSCSCCCCTTCCEEEEEGGG--------------CC-------CGGGCSSEEEEECTTSSCCCCCTT
T ss_pred -hCCCchheEeccCCCcccCcccCCEEEeCCCC--------------CC-------cccCceeeEEECCCCccccCCccc
Confidence 13447888877773211000000000001100 00 001113566666642211100011
Q ss_pred cCchhhHHHHHHhCCCCC--CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEE--EEeCCCCCchH
Q 004092 316 NMDLYNDTVRVKMGFKPD--DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVM--ILSGDSTSNYS 391 (774)
Q Consensus 316 ~~~~~k~~lR~~lgl~~~--~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~Lv--IvGG~~~e~Y~ 391 (774)
.+ .+..++++.+ .+++++++ + .. |..+.+++++.++.++.|+ ..++ ++|..... .
T Consensus 427 ~p------~r~~~~lp~~~G~v~Fg~fn-~--~~---Ki~p~~l~~WarIL~~vP~-------s~L~l~~~g~~~g~--~ 485 (631)
T 3q3e_A 427 AP------EKVDYLLRENPEVVNIGIAS-T--TM---KLNPYFLEALKAIRDRAKV-------KVHFHFALGQSNGI--T 485 (631)
T ss_dssp CC------SSCCCCCCSCCSEEEEEEEE-C--ST---TCCHHHHHHHHHHHHHCSS-------EEEEEEEESSCCGG--G
T ss_pred CC------ccccccCCcCCCeEEEEECC-c--cc---cCCHHHHHHHHHHHHhCCC-------cEEEEEecCCCchh--h
Confidence 11 1335677664 44455555 3 23 8889999999999999887 5554 35621111 1
Q ss_pred HHHHHHHHHcCCCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccccccc----
Q 004092 392 VVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVD---- 465 (774)
Q Consensus 392 ~~L~~la~~lgL~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~---- 465 (774)
..+.+.+.+.|+.+ +|.|.|.. .+....|+.+|+++.|+.+. .|.+.+|||+||+|||+....+...-+.
T Consensus 486 ~~~~~~~~~~GI~~-Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~---GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL 561 (631)
T 3q3e_A 486 HPYVERFIKSYLGD-SATAHPHSPYHQYLRILHNCDMMVNPFPFG---NTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLF 561 (631)
T ss_dssp HHHHHHHHHHHHGG-GEEEECCCCHHHHHHHHHTCSEEECCSSSC---CSHHHHHHHHTTCCEEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCc-cEEEcCCCCHHHHHHHHhcCcEEEeCCccc---CChHHHHHHHcCCCEEeccCCcHHHHhHHHHH
Confidence 33334455678887 89999976 57778999999999998665 4999999999999999977665544332
Q ss_pred --cCccEE-EEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-H--hcC--HHHHHHHHHHHHHH
Q 004092 466 --DRVNGY-LFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-K--NLM--ALETIEGYAMLLEN 527 (774)
Q Consensus 466 --dg~~G~-Lv~~~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a-k--~fs--~~~~a~~y~~L~e~ 527 (774)
-|..++ +.+ |.+++++...++.+| ++.+++++++.++.. . -|+ ...+.+.|.+++++
T Consensus 562 ~~~GLpE~LIA~--d~eeYv~~Av~La~D---~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~ 626 (631)
T 3q3e_A 562 KRLGLPEWLIAN--TVDEYVERAVRLAEN---HQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNA 626 (631)
T ss_dssp HHTTCCGGGEES--SHHHHHHHHHHHHHC---HHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHH
T ss_pred HhcCCCcceecC--CHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHH
Confidence 244443 333 799999999999999 999999999888775 2 243 34444444444444
No 45
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.14 E-value=5.8e-09 Score=114.60 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=78.4
Q ss_pred CCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCCC
Q 004092 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKEN 477 (774)
Q Consensus 402 gL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~d 477 (774)
.+++ +|.+.++. ....+|..+|+||.- |-.++++|||++|+|+|+.+..+ ..+.+.+...|+.++.
T Consensus 285 ~~~~-~v~~~~~~-p~~~lL~~~~~~v~h------~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~-- 354 (400)
T 4amg_A 285 ELPA-NVRVVEWI-PLGALLETCDAIIHH------GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEA-- 354 (400)
T ss_dssp CCCT-TEEEECCC-CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCT--
T ss_pred cCCC-CEEEEeec-CHHHHhhhhhheecc------CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCC--
Confidence 5666 89999988 467889999999853 34578999999999999976654 3345555445777764
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004092 478 IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (774)
Q Consensus 478 ~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L 524 (774)
.+..+++|.++++| +..+++..+.+.+....=...+.++..+++
T Consensus 355 ~~~~~~al~~lL~d---~~~r~~a~~l~~~~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 355 GSLGAEQCRRLLDD---AGLREAALRVRQEMSEMPPPAETAAXLVAL 398 (400)
T ss_dssp TTCSHHHHHHHHHC---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHcC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34568899999999 887777666665555444666666655543
No 46
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.09 E-value=1.8e-08 Score=112.02 Aligned_cols=154 Identities=10% Similarity=-0.029 Sum_probs=104.1
Q ss_pred CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEE-e-CCCCCchHHHHHHHHHHcCCCCccEEEc
Q 004092 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMIL-S-GDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (774)
Q Consensus 334 ~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIv-G-G~~~e~Y~~~L~~la~~lgL~~~~V~fl 411 (774)
..+++++|+..... +..+.+++|++.+. .+++++ | +... . ..+++ +|.+.
T Consensus 239 ~~v~v~~Gs~~~~~---~~~~~~~~al~~~~------------~~~v~~~g~~~~~-~-----------~~~~~-~v~~~ 290 (415)
T 1iir_A 239 PPVYLGFGSLGAPA---DAVRVAIDAIRAHG------------RRVILSRGWADLV-L-----------PDDGA-DCFAI 290 (415)
T ss_dssp CCEEEECC---CCH---HHHHHHHHHHHHTT------------CCEEECTTCTTCC-C-----------SSCGG-GEEEC
T ss_pred CeEEEeCCCCCCcH---HHHHHHHHHHHHCC------------CeEEEEeCCCccc-c-----------cCCCC-CEEEe
Confidence 45677777432344 77778888887652 355555 5 3221 0 14555 89999
Q ss_pred cCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcCC--CHHHHHHHH
Q 004092 412 AAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKALTHII 485 (774)
Q Consensus 412 G~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~~--d~e~La~aI 485 (774)
++.++ .++|..||++|..+ | .++++|||++|+|+|+.+..+ ..+.+.+...|+.++.+ +.++++++|
T Consensus 291 ~~~~~-~~~l~~~d~~v~~~-----G-~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 363 (415)
T 1iir_A 291 GEVNH-QVLFGRVAAVIHHG-----G-AGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAAL 363 (415)
T ss_dssp SSCCH-HHHGGGSSEEEECC-----C-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHH
T ss_pred CcCCh-HHHHhhCCEEEeCC-----C-hhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHH
Confidence 99866 46789999999753 3 479999999999999987754 34556655679888753 789999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 486 LQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 486 ~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
.++ +| ++.++++.+.+++.. ...-++...+.+++++.
T Consensus 364 ~~l-~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 364 ATA-LT---PETHARATAVAGTIR----TDGAAVAARLLLDAVSR 400 (415)
T ss_dssp HHH-TS---HHHHHHHHHHHHHSC----SCHHHHHHHHHHHHHHT
T ss_pred HHH-cC---HHHHHHHHHHHHHHh----hcChHHHHHHHHHHHHh
Confidence 999 88 776666655554433 33444455555666554
No 47
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.07 E-value=2.3e-08 Score=110.89 Aligned_cols=155 Identities=9% Similarity=-0.044 Sum_probs=99.3
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEc
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~fl 411 (774)
.+..+++++|+..... +....+++|+..+. +++++.+|..... ..++.+ +|.+.
T Consensus 220 ~~~~Vlv~~Gs~~~~~---~~~~~~~~al~~~~------------~~vv~~~g~~~~~----------~~~~~~-~v~~~ 273 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPA---EAARVAIEAVRAQG------------RRVVLSSGWAGLG----------RIDEGD-DCLVV 273 (404)
T ss_dssp SSCCEEECCTTSCCCT---THHHHHHHHHHHTT------------CCEEEECTTTTCC----------CSSCCT-TEEEE
T ss_pred CCCeEEEECCCCCCcH---HHHHHHHHHHHhCC------------CEEEEEeCCcccc----------cccCCC-CEEEe
Confidence 3455677777443244 66777788887652 5667766432211 113455 79999
Q ss_pred cCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc----cccccCccEEEEcCC--CHHHHHHHH
Q 004092 412 AAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR----KYVDDRVNGYLFPKE--NIKALTHII 485 (774)
Q Consensus 412 G~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~----EiV~dg~~G~Lv~~~--d~e~La~aI 485 (774)
++.+. ..++..||++|..+ -.+++.|||++|+|+|+.+..+-. +.+.+...|..++.+ ++++++++|
T Consensus 274 ~~~~~-~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai 346 (404)
T 3h4t_A 274 GEVNH-QVLFGRVAAVVHHG------GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAAL 346 (404)
T ss_dssp SSCCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHH
T ss_pred cCCCH-HHHHhhCcEEEECC------cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHH
Confidence 99854 88999999999664 246889999999999998765432 334444568887653 789999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004092 486 LQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (774)
Q Consensus 486 ~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L 524 (774)
.++++ ++.++++.+.+..... -..+.+++..+++
T Consensus 347 ~~ll~----~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 380 (404)
T 3h4t_A 347 ATALT----PGIRARAAAVAGTIRT-DGTTVAAKLLLEA 380 (404)
T ss_dssp HHHTS----HHHHHHHHHHHTTCCC-CHHHHHHHHHHHH
T ss_pred HHHhC----HHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 99985 3445555444433323 2344444443333
No 48
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.01 E-value=2.5e-09 Score=103.78 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=96.4
Q ss_pred CCCEEEEEEeccc--ccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccE
Q 004092 332 PDDLVIAIVGTQF--MYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVV 408 (774)
Q Consensus 332 ~~~~vIl~vGsrl--~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V 408 (774)
+...+++++|+.. .+. |.+..+++|+..+. .++++++ ++..+ .+++ +|
T Consensus 20 ~~~~vlv~~Gs~~~~~~~---~~~~~~~~al~~~~------------~~~~~~~g~~~~~-------------~~~~-~v 70 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTE---ERANVIASALAQIP------------QKVLWRFDGNKPD-------------TLGL-NT 70 (170)
T ss_dssp TTCEEEEECCSCCTTCCH---HHHHHHHHHHTTSS------------SEEEEECCSSCCT-------------TCCT-TE
T ss_pred CCCEEEEECCCCcccCCH---HHHHHHHHHHHhCC------------CeEEEEECCcCcc-------------cCCC-cE
Confidence 3456777788432 144 77777788875441 4777777 44321 3555 79
Q ss_pred EEccCcccHHHHH--HHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc----ccccccccCccEEEEcCC--CHHH
Q 004092 409 KHMAAEGDVDSVL--NTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDRVNGYLFPKE--NIKA 480 (774)
Q Consensus 409 ~flG~~~dl~~~l--~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g----gi~EiV~dg~~G~Lv~~~--d~e~ 480 (774)
.+.|+.++ ..++ .+||++|.. |-+++++|||++|+|+|+.+.. +..+.+.+...|+++++. ++++
T Consensus 71 ~~~~~~~~-~~~l~~~~ad~~I~~------~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~ 143 (170)
T 2o6l_A 71 RLYKWIPQ-NDLLGHPKTRAFITH------GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTD 143 (170)
T ss_dssp EEESSCCH-HHHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHH
T ss_pred EEecCCCH-HHHhcCCCcCEEEEc------CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHH
Confidence 99999865 5667 899999974 2368999999999999999875 345667777789999876 8999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHH
Q 004092 481 LTHIILQVITNGKISPFARNIA 502 (774)
Q Consensus 481 La~aI~~Ll~d~~~~~~r~~m~ 502 (774)
++++|.++++| ++.++++.
T Consensus 144 l~~~i~~ll~~---~~~~~~a~ 162 (170)
T 2o6l_A 144 LLNALKRVIND---PSYKENVM 162 (170)
T ss_dssp HHHHHHHHHHC---HHHHHHHH
T ss_pred HHHHHHHHHcC---HHHHHHHH
Confidence 99999999999 76544443
No 49
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.97 E-value=5.5e-08 Score=108.02 Aligned_cols=138 Identities=9% Similarity=-0.064 Sum_probs=94.8
Q ss_pred CEEEEEEeccc--ccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEE-eCCCCCchHHHHHHHHHHcCCCCccEEE
Q 004092 334 DLVIAIVGTQF--MYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMIL-SGDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (774)
Q Consensus 334 ~~vIl~vGsrl--~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIv-GG~~~e~Y~~~L~~la~~lgL~~~~V~f 410 (774)
..+++++|+.. ... +....+++|+..+. .+++++ |....+. ..+++ +|.+
T Consensus 238 ~~v~v~~Gs~~~~~~~---~~~~~~~~al~~~~------------~~~v~~~g~~~~~~-----------~~~~~-~v~~ 290 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIA---DAAKVAVEAIRAQG------------RRVILSRGWTELVL-----------PDDRD-DCFA 290 (416)
T ss_dssp CCEEECCTTCCSHHHH---HHHHHHHHHHHHTT------------CCEEEECTTTTCCC-----------SCCCT-TEEE
T ss_pred CeEEEecCCCCccChH---HHHHHHHHHHHHCC------------CeEEEEeCCccccc-----------cCCCC-CEEE
Confidence 44666677432 133 66777778876652 456665 5222110 14565 7999
Q ss_pred ccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcc----cccccccCccEEEEcC--CCHHHHHHH
Q 004092 411 MAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPK--ENIKALTHI 484 (774)
Q Consensus 411 lG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~gg----i~EiV~dg~~G~Lv~~--~d~e~La~a 484 (774)
.++.+ ..++|..||++|.-+ -.++++|||++|+|+|+.+..+ ..+.+.+...|+.++. .+.++++++
T Consensus 291 ~~~~~-~~~ll~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~ 363 (416)
T 1rrv_A 291 IDEVN-FQALFRRVAAVIHHG------SAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAA 363 (416)
T ss_dssp ESSCC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHH
T ss_pred eccCC-hHHHhccCCEEEecC------ChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHH
Confidence 99985 578899999999732 3579999999999999987643 3345555567888864 478999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHH
Q 004092 485 ILQVITNGKISPFARNIASIGRRSV 509 (774)
Q Consensus 485 I~~Ll~d~~~~~~r~~m~~~ar~~a 509 (774)
|.++ .| ++.++++++.+++..
T Consensus 364 i~~l-~~---~~~~~~~~~~~~~~~ 384 (416)
T 1rrv_A 364 LTTV-LA---PETRARAEAVAGMVL 384 (416)
T ss_dssp HHHH-TS---HHHHHHHHHHTTTCC
T ss_pred HHHh-hC---HHHHHHHHHHHHHHh
Confidence 9999 88 776666665544333
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.69 E-value=4.2e-06 Score=99.88 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=136.4
Q ss_pred HHHHhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCC
Q 004092 324 VRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHY 403 (774)
Q Consensus 324 lR~~lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL 403 (774)
.|..+|++++.+++.++. + .. |=.+.+++++.++.++.|+ .+|++...+.. -...+++.+++.|+
T Consensus 513 ~R~~~gLp~~~v~f~~fN-~--~~---Ki~p~~~~~W~~IL~~vP~-------S~L~Ll~~~~~--~~~~l~~~~~~~gi 577 (723)
T 4gyw_A 513 TRSQYGLPEDAIVYCNFN-Q--LY---KIDPSTLQMWANILKRVPN-------SVLWLLRFPAV--GEPNIQQYAQNMGL 577 (723)
T ss_dssp EGGGGTCCTTSEEEECCS-C--GG---GCCHHHHHHHHHHHHHCSS-------EEEEEEETTGG--GHHHHHHHHHHTTC
T ss_pred chhhcCCCCCCEEEEeCC-c--cc---cCCHHHHHHHHHHHHhCCC-------CeEEEEeCcHH--HHHHHHHHHHhcCC
Confidence 366789998886655555 2 22 6677889999999999999 89988883322 13678889999999
Q ss_pred CCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccc-----ccc-cCccEEEEcC
Q 004092 404 PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK-----YVD-DRVNGYLFPK 475 (774)
Q Consensus 404 ~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~E-----iV~-dg~~G~Lv~~ 475 (774)
..++|.|.+.. ++-...|+.+||++=|..+. -+.+.+||+.+|+|||+-.-....- ++. =|..-++ .
T Consensus 578 ~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~~---g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~i--a 652 (723)
T 4gyw_A 578 PQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCN---GHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELI--A 652 (723)
T ss_dssp CGGGEEEEECCCHHHHHHHGGGCSEEECCSSSC---CSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGB--C
T ss_pred CcCeEEECCCCCHHHHHHHhCCCeEEeCCCCcC---CHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccc--c
Confidence 87799999965 56677888999999887654 4899999999999999964322211 110 0111122 2
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHh
Q 004092 476 ENIKALTHIILQVITNGKISPFARNIASIGRRSVK---NLMALETIEGYAMLLENVL 529 (774)
Q Consensus 476 ~d~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak---~fs~~~~a~~y~~L~e~ll 529 (774)
.|.++..+.-.++.+| ++.+.++.+.-++... -|+....+..+++.|+.+-
T Consensus 653 ~~~~~Y~~~a~~la~d---~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w 706 (723)
T 4gyw_A 653 KNRQEYEDIAVKLGTD---LEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMW 706 (723)
T ss_dssp SSHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHH
Confidence 4889999999999999 9999998888777663 2888888888888887763
No 51
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.09 E-value=3.9e-05 Score=90.45 Aligned_cols=191 Identities=15% Similarity=0.072 Sum_probs=125.6
Q ss_pred HHHhCCC--CCCEEEEEEecccccccccccHHH-HHHHHHHchh--hcccCCCCCCCeEEEEEe-CCCCCchHHH----H
Q 004092 325 RVKMGFK--PDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVV----I 394 (774)
Q Consensus 325 R~~lgl~--~~~~vIl~vGsrl~~~KgiKg~~l-LLeA~~~L~~--~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~----L 394 (774)
++++|+. ++.++++++. |+... |++++ ++..+..+.+ +.|+ ....++++++.| +......... +
T Consensus 505 ~~~~Gl~vdpd~l~~~~vk-RlheY---KRq~Lnil~ii~~~~~i~~~~~--~~~~p~q~If~GKA~P~y~~aK~iIk~i 578 (796)
T 2c4m_A 505 LERQGIEIDPESIFDVQIK-RLHEY---KRQLMNALYVLDLYFRIKEDGL--TDIPARTVIFGAKAAPGYVRAKAIIKLI 578 (796)
T ss_dssp HHHHCCCCCTTSEEEEEEC-CCCGG---GTHHHHHHHHHHHHHHHHTSCC--CSSCCEEEEEECCCCTTCHHHHHHHHHH
T ss_pred HHHhCCCCCCCCcEEEEee-cchhh---cccCEeHHHHHHHHHHHhhCCC--CCCCCeEEEEEecCCHhHHHHHHHHHHH
Confidence 5566664 5677888887 88877 99999 8888887764 3332 112348999999 6544332222 3
Q ss_pred HHHHH----HcCCCC-ccEEEc-cCc-ccHHHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCcccccccc
Q 004092 395 EAIAH----NLHYPL-GVVKHM-AAE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVD 465 (774)
Q Consensus 395 ~~la~----~lgL~~-~~V~fl-G~~-~dl~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~ 465 (774)
..+++ +-.+++ -+|.|+ ++. +-...++.+||++++||. .| ..|..=+-||..|.+.|++--|...|+.+
T Consensus 579 ~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~E--AsGTs~MKam~NGaL~iGtLDGanvEi~e 656 (796)
T 2c4m_A 579 NSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKE--ASGTSNMKFMMNGALTLGTMDGANVEIVD 656 (796)
T ss_dssp HHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSC--SCCHHHHHHHHTTCEEEEESSTHHHHHHH
T ss_pred HHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCC--CCchHHHHHHHcCCeEEeccCCeEeehhh
Confidence 33333 012332 035555 565 445678999999999998 88 57888899999999999998888888764
Q ss_pred c--CccEEEEcC--CCHHHHHHH---HHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 466 D--RVNGYLFPK--ENIKALTHI---ILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 466 d--g~~G~Lv~~--~d~e~La~a---I~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
+ ..||++|-. .+++++-.+ ....-.+ +. .+++-+.+.. ..|+|..- ..|..+|+++++
T Consensus 657 ~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~---~~-~~~vvd~~~~--g~fs~~~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 657 SVGEENAYIFGARVEELPALRESYKPYELYETV---PG-LKRALDALDN--GTLNDNNS-GLFYDLKHSLIH 721 (796)
T ss_dssp HHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHS---TT-HHHHHHTTTS--SSSCCTTC-CHHHHHHHHHHS
T ss_pred hcCCCcEEEecCchhhHHHHHHhhChHHHhhcC---HH-HHHHHHHHHc--CCCCCCCH-HHHHHHHHHHHh
Confidence 3 469999987 677776653 2223334 32 2222221111 35888776 779999999875
No 52
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.01 E-value=5.2e-05 Score=89.41 Aligned_cols=191 Identities=11% Similarity=0.042 Sum_probs=125.0
Q ss_pred HHHHhCCC--CCCEEEEEEecccccccccccHHH-HHHHHHHchh--hcccCCCCCCCeEEEEEe-CCCCCchHHHHHHH
Q 004092 324 VRVKMGFK--PDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAI 397 (774)
Q Consensus 324 lR~~lgl~--~~~~vIl~vGsrl~~~KgiKg~~l-LLeA~~~L~~--~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~l 397 (774)
+++++|+. ++.++++++. |+... |++++ ++..+..+.+ ..|+ ..-.++.+++.| +.........+.++
T Consensus 514 l~~~~Gl~vdpd~l~~~~vk-Rl~eY---KRq~Lnil~ii~~~~~i~~~~~--~~~~p~q~If~GKA~P~y~~aK~iIk~ 587 (796)
T 1l5w_A 514 VKVRTGIEINPQAIFDIQIK-RLHEY---KRQHLNLLHILALYKEIRENPQ--ADRVPRVFLFGAKAAPGYYLAKNIIFA 587 (796)
T ss_dssp HHHHHCCCCCTTSEEEEEES-CCCGG---GTHHHHHHHHHHHHHHHHTCTT--CCCCCEEEEEECCCCTTCHHHHHHHHH
T ss_pred HHHHhCCCcCCCcceEeeee-cchhh---cccCEeHHHHHHHHHHHhcCCC--CCCCCeEEEEEecCChhHHHHHHHHHH
Confidence 35667765 5677788887 88877 99999 8888887754 2222 112458999999 65443322223222
Q ss_pred HHHc--------CCCC-ccEEEc-cCc-ccHHHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCccccccc
Q 004092 398 AHNL--------HYPL-GVVKHM-AAE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYV 464 (774)
Q Consensus 398 a~~l--------gL~~-~~V~fl-G~~-~dl~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV 464 (774)
+..+ .+++ -+|.|+ ++. +-...++.+||++++||. .| ..|..=+-||..|.+.|++--|...|+.
T Consensus 588 i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~E--AsGTs~MKam~NGaL~iGtLDGanvEi~ 665 (796)
T 1l5w_A 588 INKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKE--ASGTGNMKLALNGALTVGTLDGANVEIA 665 (796)
T ss_dssp HHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTC--CCCSHHHHHHHTTCEEEECSCTTHHHHH
T ss_pred HHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCC--CCchHHHHHHHcCCeeecCcCCeeeehh
Confidence 3222 2221 046666 455 445678999999999998 88 4777779999999999999888888876
Q ss_pred cc--CccEEEEcCCCHHHHHHH-------HHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 004092 465 DD--RVNGYLFPKENIKALTHI-------ILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (774)
Q Consensus 465 ~d--g~~G~Lv~~~d~e~La~a-------I~~Ll~d~~~~~~r~~m~~~ar~~ak~fs~~~~a~~y~~L~e~ll~ 530 (774)
++ ..||++|-. +++++.+. ....-.+ + ..+++-+.+.. ..|+|..- ..|..+|++++.
T Consensus 666 e~vG~~NgF~FG~-~~~ev~~l~~~~y~a~~~y~~~---~-~~~~vvd~~~~--g~fs~~~~-~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 666 EKVGEENIFIFGH-TVEQVKAILAKGYDPVKWRKKD---K-VLDAVLKELES--GKYSDGDK-HAFDQMLHSIGK 732 (796)
T ss_dssp HHHCGGGSEECSC-CHHHHHHHHHHCCCHHHHHHHC---H-HHHHHHHHHHH--TTTTTTCT-TTTHHHHHHTST
T ss_pred hccCCCcEEEecC-CHHHHHHHHHcccCHHHHhhcC---H-HHHHHHHHHHc--CCCCCCcH-HHHHHHHHHHhc
Confidence 43 468999986 77776632 2222233 3 33333332221 46888775 779999999865
No 53
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=97.96 E-value=0.00012 Score=86.53 Aligned_cols=149 Identities=15% Similarity=0.052 Sum_probs=99.6
Q ss_pred HHHHhCCC--CCCEEEEEEecccccccccccHHHH-HHHHHHchh--hcccCCCCCCCeEEEEEe-CCCCCchHHH----
Q 004092 324 VRVKMGFK--PDDLVIAIVGTQFMYRGLWLEHALI-LRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVV---- 393 (774)
Q Consensus 324 lR~~lgl~--~~~~vIl~vGsrl~~~KgiKg~~lL-LeA~~~L~~--~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~---- 393 (774)
+++++|+. ++.++++++. |+... |+++++ +..+..+.+ +.|+ ..-.++.+++.| +.........
T Consensus 538 l~~~~Gl~vdpd~l~~g~vk-Rl~eY---KRq~L~~l~~i~~~~~i~~~~~--~~~~p~q~If~GKA~P~y~~aK~iIkl 611 (824)
T 2gj4_A 538 LEREYKVHINPNSLFDVQVK-RIHEY---KRQLLNCLHVITLYNRIKKEPN--KFVVPRTVMIGGKAAPGYHMAKMIIKL 611 (824)
T ss_dssp HHHHHCCCCCTTSEEEEEES-CCCGG---GTHHHHHHHHHHHHHHHHHCTT--SCCCCEEEEEECCCCTTCHHHHHHHHH
T ss_pred HHHHhCCCcCCCcceEeeee-cchhh---cchhhHHHHHHHHHHHHHhCCC--CCCCCEEEEEEEeCCHhHHHHHHHHHH
Confidence 44556664 5677778887 88877 999997 888887752 3332 111247898888 6444222222
Q ss_pred HHHHHHHcCCC---Cc--cEEEc-cCc-ccHHHHHHHcCEEEEcCc--cCcCCccHHHHHHHHcCCCEEEcCCccccccc
Q 004092 394 IEAIAHNLHYP---LG--VVKHM-AAE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYV 464 (774)
Q Consensus 394 L~~la~~lgL~---~~--~V~fl-G~~-~dl~~~l~aaDI~V~PS~--~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV 464 (774)
+..+++..+-. .+ +|.|+ ++. +-...++++||++++||. .| ..|..=+-||..|.+.|+|--|...|+.
T Consensus 612 i~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~E--AsGTs~MKamlNGaLtigtlDGanvEi~ 689 (824)
T 2gj4_A 612 ITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE--ASGTGNMKFMLNGALTIGTMDGANVEMA 689 (824)
T ss_dssp HHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSC--SCCSHHHHHHHTTCEEEECSCTTHHHHH
T ss_pred HHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCC--CCchHHHHHHHcCceEEEEecCccchhh
Confidence 44444433110 12 36655 565 445668999999999998 88 4777779999999999999877777765
Q ss_pred c--cCccEEEEcCCCHHHH
Q 004092 465 D--DRVNGYLFPKENIKAL 481 (774)
Q Consensus 465 ~--dg~~G~Lv~~~d~e~L 481 (774)
+ .+.||++|... ++++
T Consensus 690 e~vG~~Ngf~FG~~-~~ev 707 (824)
T 2gj4_A 690 EEAGEENFFIFGMR-VEDV 707 (824)
T ss_dssp HHHCGGGSEECSCC-HHHH
T ss_pred hccCCCCEEEeCCc-HHHH
Confidence 3 45689999863 5555
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.81 E-value=0.0021 Score=67.73 Aligned_cols=242 Identities=9% Similarity=0.049 Sum_probs=125.8
Q ss_pred eEEEEe-cCCCCC-hHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEccc--chhHHHHhhhcCccEEEE
Q 004092 146 QLALVF-PDLLID-PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT--GREKASFVNWLNYDGILV 221 (774)
Q Consensus 146 rialV~-~~L~~G-G~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~--~~~l~~~i~~~~~DIIhv 221 (774)
+|+|.. ++..+| |--..+.+||+.|. +|..++..... ...+..|.++..++. ...+...++..++|+|++
T Consensus 2 ki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~--~~~~~~g~~v~~l~~~d~~~~~~~l~~~~~d~lIv 75 (282)
T 3hbm_A 2 KVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEG--SLIDEIPYPVYELSSESIYELINLIKEEKFELLII 75 (282)
T ss_dssp CEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTT--CCGGGCCSCEEECSSSCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcH--hHHHHCCCeEEEcCccCHHHHHHHHHhCCCCEEEE
Confidence 344433 344555 66678889999988 78777765422 223345777777653 234556677789999999
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHhhhhhhhHHHHHHHHHHHhccEEEccCCc-chhhcccCCCCCE
Q 004092 222 NSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPMMYSAFDAGNY 300 (774)
Q Consensus 222 hs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~~~~~~~~li~~~~~~~~~a~~vv~ps~~-~~~i~~~v~~~ki 300 (774)
.+.....-....+.. ..++++++ +.+. .. . . .++.+.-++-. ....|...-+...
T Consensus 76 D~Y~~~~~~~~~lk~-~~~~~i~~-iDD~--~~---~---~--------------~~Dllin~~~~~~~~~Y~~~~p~~~ 131 (282)
T 3hbm_A 76 DHYGISVDDEKLIKL-ETGVKILS-FDDE--IK---P---H--------------HCDILLNVNAYAKASDYEGLVPFKC 131 (282)
T ss_dssp ECTTCCHHHHHHHHH-HHCCEEEE-ECSS--CC---C---C--------------CCSEEEECSTTCCGGGGTTTCC-CC
T ss_pred ECCCCCHHHHHHHHH-hcCcEEEE-EecC--CC---c---c--------------cCCEEEeCCcccchhhccccCCCCC
Confidence 888764444333321 11345543 3321 10 0 0 12222222111 1111221111111
Q ss_pred EEeCCCCCCcccccccCchhhHHHHHHh-CCCC-CCEEEEEEeccccccccccc-HHHHHHHHHHchhhcccCCCCCCCe
Q 004092 301 YVIPGSPAKAWEADTNMDLYNDTVRVKM-GFKP-DDLVIAIVGTQFMYRGLWLE-HALILRALLPLFSEVSVENESNSPI 377 (774)
Q Consensus 301 ~vIpg~gvd~~~~~~~~~~~k~~lR~~l-gl~~-~~~vIl~vGsrl~~~KgiKg-~~lLLeA~~~L~~~~p~~~~~~~~v 377 (774)
.+.-|. + +-+.. +++...- ...+ ...+++++|| ... .+ ...++++ +.+. ..
T Consensus 132 ~~l~G~--~---Y~~lR----~eF~~~~~~~r~~~~~ILv~~GG-~d~----~~l~~~vl~~---L~~~-~~-------- 185 (282)
T 3hbm_A 132 EVRCGF--S---YALIR----EEFYQEAKENRKKKYDFFICMGG-TDI----KNLSLQIASE---LPKT-KI-------- 185 (282)
T ss_dssp EEEESG--G---GCCCC----HHHHHHTTCCCCCCEEEEEECCS-CCT----TCHHHHHHHH---SCTT-SC--------
T ss_pred eEeeCC--c---ccccC----HHHHHhhhhccccCCeEEEEECC-Cch----hhHHHHHHHH---hhcC-CC--------
Confidence 122221 0 01111 1111110 1122 2345566674 344 33 2233333 3321 11
Q ss_pred EEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcC
Q 004092 378 KVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (774)
Q Consensus 378 ~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd 456 (774)
-.+|.| +.. ..+.+++.+++ .+ ++.+.++.+++.++|++||++|.+. |.++.|++++|+|.|.-+
T Consensus 186 i~vv~G~~~~---~~~~l~~~~~~--~~--~v~v~~~~~~m~~~m~~aDlvI~~g-------G~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 186 ISIATSSSNP---NLKKLQKFAKL--HN--NIRLFIDHENIAKLMNESNKLIISA-------SSLVNEALLLKANFKAIC 251 (282)
T ss_dssp EEEEECTTCT---THHHHHHHHHT--CS--SEEEEESCSCHHHHHHTEEEEEEES-------SHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCch---HHHHHHHHHhh--CC--CEEEEeCHHHHHHHHHHCCEEEECC-------cHHHHHHHHcCCCEEEEe
Confidence 345566 432 23666666653 33 5999999999999999999999842 379999999999998865
Q ss_pred C
Q 004092 457 L 457 (774)
Q Consensus 457 ~ 457 (774)
.
T Consensus 252 ~ 252 (282)
T 3hbm_A 252 Y 252 (282)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.15 E-value=0.058 Score=57.49 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=72.6
Q ss_pred hHHHHHHhCCC-CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHH
Q 004092 321 NDTVRVKMGFK-PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAH 399 (774)
Q Consensus 321 k~~lR~~lgl~-~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~ 399 (774)
.+..++.+++. ++..+++..|++....|.|. .+.+.+++..|.++ + ++++++|++... +..+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp-~~~~~~l~~~L~~~--~-------~~vvl~g~~~e~---~~~~~i~~ 233 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWP-HYHYAELAKQLIDE--G-------YQVVLFGSAKDH---EAGNEILA 233 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCC-HHHHHHHHHHHHHT--T-------CEEEECCCGGGH---HHHHHHHT
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCC-HHHHHHHHHHHHHC--C-------CeEEEEeChhhH---HHHHHHHH
Confidence 45567778876 45567777786454444443 44567777777654 3 788889965431 33344444
Q ss_pred HcC--CCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 400 NLH--YPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 400 ~lg--L~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
..+ .....+.+.|.. .++..+++.||++|... + | .+-.|.|+|+|+|+-
T Consensus 234 ~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~D-----s-g-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 234 ALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTND-----S-G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp TSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEES-----S-H-HHHHHHHTTCCEEEE
T ss_pred hhhhccccceEeccCcCCHHHHHHHHHhCCEEEecC-----C-H-HHHHHHHcCCCEEEE
Confidence 221 012135667754 78999999999999874 1 2 233399999999983
No 56
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.74 E-value=0.019 Score=64.52 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=69.9
Q ss_pred cEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----ccccccC-ccEEEEcC--CC
Q 004092 407 VVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDR-VNGYLFPK--EN 477 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~EiV~dg-~~G~Lv~~--~d 477 (774)
++.+.++..+. .+|+ ++|+||.= |-.++++||+++|+|+|+-+..+- ...+.+. ..|+.++. -+
T Consensus 326 ~~~v~~w~pq~-~vL~h~~~~~fvth------~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~ 398 (456)
T 2c1x_A 326 YGMVVPWAPQA-EVLAHEAVGAFVTH------CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFT 398 (456)
T ss_dssp TEEEESCCCHH-HHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCC
T ss_pred ceEEecCCCHH-HHhcCCcCCEEEec------CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcC
Confidence 68888988764 6888 77888853 336789999999999999776432 2345444 45887764 36
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc
Q 004092 478 IKALTHIILQVITNGKISPFARNIASIGRRSVKNL 512 (774)
Q Consensus 478 ~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~f 512 (774)
.++++++|.++++| ++ .++|.+++++..+.+
T Consensus 399 ~~~l~~~i~~ll~~---~~-~~~~r~~a~~l~~~~ 429 (456)
T 2c1x_A 399 KSGLMSCFDQILSQ---EK-GKKLRENLRALRETA 429 (456)
T ss_dssp HHHHHHHHHHHHHS---HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---Cc-HHHHHHHHHHHHHHH
Confidence 89999999999998 65 556777776666443
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=96.35 E-value=0.035 Score=62.30 Aligned_cols=95 Identities=7% Similarity=-0.018 Sum_probs=67.6
Q ss_pred cEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----ccccccC-ccEEEEcC--CCHH
Q 004092 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDR-VNGYLFPK--ENIK 479 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~EiV~dg-~~G~Lv~~--~d~e 479 (774)
++.+.++..+ ..+|+.+++-++-+. |--++++||+++|+|+|+-+..+- ...+.+. ..|+.++. -+.+
T Consensus 328 ~~~vv~w~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~ 402 (454)
T 3hbf_A 328 KGKIVAWAPQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKE 402 (454)
T ss_dssp TEEEESSCCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHH
T ss_pred ceEEEeeCCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHH
Confidence 6888899876 589999995444442 235788999999999999776432 2345553 56887764 4689
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 004092 480 ALTHIILQVITNGKISPFARNIASIGRRSVK 510 (774)
Q Consensus 480 ~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak 510 (774)
+++++|.+++++ + ..++|++++++..+
T Consensus 403 ~l~~av~~ll~~---~-~~~~~r~~a~~l~~ 429 (454)
T 3hbf_A 403 SIKKALELTMSS---E-KGGIMRQKIVKLKE 429 (454)
T ss_dssp HHHHHHHHHHSS---H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---C-hHHHHHHHHHHHHH
Confidence 999999999977 4 34456666655553
No 58
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=96.17 E-value=0.18 Score=56.83 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=68.5
Q ss_pred cEEEccCcccHHHHHHHcCE--EEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----ccccc-cCccEEEEcC-CCH
Q 004092 407 VVKHMAAEGDVDSVLNTADV--VIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVD-DRVNGYLFPK-ENI 478 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~aaDI--~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~EiV~-dg~~G~Lv~~-~d~ 478 (774)
++.+.++..+. .+|+.+++ ||.- |-.++++||+++|+|+|+-+..+- ...+. +-..|+.++. -+.
T Consensus 354 ~~~v~~~~pq~-~~L~h~~~~~~vth------~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 426 (482)
T 2pq6_A 354 RGLIASWCPQD-KVLNHPSIGGFLTH------CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKR 426 (482)
T ss_dssp TEEEESCCCHH-HHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCH
T ss_pred CEEEEeecCHH-HHhcCCCCCEEEec------CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCH
Confidence 78899998776 58876665 5542 346789999999999999876532 23342 4445877752 378
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc
Q 004092 479 KALTHIILQVITNGKISPFARNIASIGRRSVKNL 512 (774)
Q Consensus 479 e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~ak~f 512 (774)
++++++|.++++| ++ .++|.+++++..+.+
T Consensus 427 ~~l~~~i~~ll~~---~~-~~~~r~~a~~l~~~~ 456 (482)
T 2pq6_A 427 EELAKLINEVIAG---DK-GKKMKQKAMELKKKA 456 (482)
T ss_dssp HHHHHHHHHHHTS---HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---Cc-HHHHHHHHHHHHHHH
Confidence 9999999999998 65 466777777666543
No 59
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=95.67 E-value=1.4 Score=47.30 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=70.9
Q ss_pred HHHHhCCCCC-CEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcC
Q 004092 324 VRVKMGFKPD-DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLH 402 (774)
Q Consensus 324 lR~~lgl~~~-~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lg 402 (774)
+..+.|+.++ ..+++..|++.. .|.| ..+...+.+..|.++ . .+++++|++... +..+++++.++
T Consensus 175 ~l~~~g~~~~~~~i~i~pga~~~-~k~w-p~~~~~~l~~~l~~~--g-------~~vvl~g~~~e~---~~~~~i~~~~~ 240 (349)
T 3tov_A 175 FYSSHGLTDTDILIGFNIGSAVP-EKRW-PAERFAHVADYFGRL--G-------YKTVFFGGPMDL---EMVQPVVEQME 240 (349)
T ss_dssp HHHHTTCCTTCCEEEEECCCSSG-GGCC-CHHHHHHHHHHHHHH--T-------CEEEECCCTTTH---HHHHHHHHTCS
T ss_pred HHHHcCCCCCCCEEEEeCCCCCc-cCCC-CHHHHHHHHHHHHhC--C-------CeEEEEeCcchH---HHHHHHHHhcc
Confidence 3445677654 456666775543 3333 345567777777655 3 677888965542 44556666444
Q ss_pred CCCccEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc
Q 004092 403 YPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (774)
Q Consensus 403 L~~~~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g 458 (774)
- . .+.+.|.. .++..+++.||++|.+- .|..-+ |.|+|+|+|+--.+
T Consensus 241 ~-~-~~~l~g~~sl~e~~ali~~a~~~i~~D------sG~~Hl-Aaa~g~P~v~lfg~ 289 (349)
T 3tov_A 241 T-K-PIVATGKFQLGPLAAAMNRCNLLITND------SGPMHV-GISQGVPIVALYGP 289 (349)
T ss_dssp S-C-CEECTTCCCHHHHHHHHHTCSEEEEES------SHHHHH-HHTTTCCEEEECSS
T ss_pred c-c-cEEeeCCCCHHHHHHHHHhCCEEEECC------CCHHHH-HHhcCCCEEEEECC
Confidence 2 2 46777744 78999999999999762 233333 89999999995333
No 60
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=95.49 E-value=0.22 Score=56.03 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=61.9
Q ss_pred EEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----cccc-ccCccEEEEcC-----CC
Q 004092 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYV-DDRVNGYLFPK-----EN 477 (774)
Q Consensus 408 V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~EiV-~dg~~G~Lv~~-----~d 477 (774)
+...++..+. .+|+.+++-++-+. |--++++||+++|+|+|+-+..+- ...+ +.-..|+.++. -+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~ 415 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCC
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccC
Confidence 4555688665 89998896444332 346788999999999999776532 2333 44445777654 37
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 004092 478 IKALTHIILQVITNGKISPFARNIASIGRRSV 509 (774)
Q Consensus 478 ~e~La~aI~~Ll~d~~~~~~r~~m~~~ar~~a 509 (774)
.++++++|.+++.+ + .-.++.+++++..
T Consensus 416 ~~~l~~av~~vl~~---~-~~~~~r~~a~~l~ 443 (480)
T 2vch_A 416 REEVARVVKGLMEG---E-EGKGVRNKMKELK 443 (480)
T ss_dssp HHHHHHHHHHHHTS---T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---c-chHHHHHHHHHHH
Confidence 89999999999984 3 2233444444444
No 61
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=95.43 E-value=0.25 Score=55.39 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=57.6
Q ss_pred cEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccc----ccc-cccCccEEEE-c---C
Q 004092 407 VVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKY-VDDRVNGYLF-P---K 475 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi----~Ei-V~dg~~G~Lv-~---~ 475 (774)
++...++..+. .+|+ ++|+||.=. -.++++||+++|+|+|+-+..+- ... +++-..|+.+ . .
T Consensus 333 ~~~v~~w~pq~-~vL~h~~~~~fvth~------G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~ 405 (463)
T 2acv_A 333 KGMICGWAPQV-EVLAHKAIGGFVSHC------GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRK 405 (463)
T ss_dssp SEEEESSCCHH-HHHHSTTEEEEEECC------CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCT
T ss_pred CEEEEccCCHH-HHhCCCccCeEEecC------CchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCC
Confidence 68888888766 5676 688888543 36789999999999999876432 234 4454568887 2 2
Q ss_pred ----CCHHHHHHHHHHHHHc
Q 004092 476 ----ENIKALTHIILQVITN 491 (774)
Q Consensus 476 ----~d~e~La~aI~~Ll~d 491 (774)
-+.++++++|.+++++
T Consensus 406 ~~~~~~~~~l~~ai~~ll~~ 425 (463)
T 2acv_A 406 GSDVVAAEEIEKGLKDLMDK 425 (463)
T ss_dssp TCCCCCHHHHHHHHHHHTCT
T ss_pred CCccccHHHHHHHHHHHHhc
Confidence 3789999999999963
No 62
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=95.12 E-value=0.016 Score=58.69 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=39.1
Q ss_pred cEEEccCcccHHHHHH-HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCc
Q 004092 407 VVKHMAAEGDVDSVLN-TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (774)
Q Consensus 407 ~V~flG~~~dl~~~l~-aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~g 458 (774)
++...++.+++..+|+ .||++|.-. -.++++||+++|+|.|.-+.+
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIsha------GagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVISHA------GTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEESS------CHHHHHHHHHTTCCCCEECCS
T ss_pred eEEEeeccchHHHHHHhcCCEEEECC------cHHHHHHHHHhCCCEEEEcCc
Confidence 5777888899999999 999999653 467999999999999886654
No 63
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=94.90 E-value=0.17 Score=60.01 Aligned_cols=242 Identities=14% Similarity=0.148 Sum_probs=121.5
Q ss_pred CccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCchhhhhHHHh---h--hhhhhHHHHHHHHHHHhccEEEccCCcc-
Q 004092 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNY---A--SSGQLELLNDWKKVFNRATVVVFPDYVL- 288 (774)
Q Consensus 215 ~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~l~~~~~k~---~--~~~~~~li~~~~~~~~~a~~vv~ps~~~- 288 (774)
..++++.++.... .+ .+..+..+|.++||.++....... . ..................+.+..++...
T Consensus 417 ~a~~~v~n~~~~~-----~~-~k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~s~~~~ 490 (729)
T 3l7i_A 417 EASHWVSNARTPL-----YL-NKKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWDYLISPNRYST 490 (729)
T ss_dssp HEEEEEESSCCCT-----TS-CCCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHHHHHTTCSEEEESSHHHH
T ss_pred cCcEEEECCCCcc-----cc-ccCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHHHhhccCCEEEeCCHHHH
Confidence 3455555554431 11 235567899999996543110000 0 0001111112222334456666665542
Q ss_pred hhhcccCC--CCCEEEeCCCCCCcccc-cccCchhhHHHHHHhCCCCCCEEEEEEeccccccc----c--cccHHHHHHH
Q 004092 289 PMMYSAFD--AGNYYVIPGSPAKAWEA-DTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRG----L--WLEHALILRA 359 (774)
Q Consensus 289 ~~i~~~v~--~~ki~vIpg~gvd~~~~-~~~~~~~k~~lR~~lgl~~~~~vIl~vGsrl~~~K----g--iKg~~lLLeA 359 (774)
......+. ..++... |.|-...-+ .......++.+++++++++++.+|+|.- -+.... + ......-++.
T Consensus 491 ~~~~~~f~~~~~~i~~~-G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaP-T~r~~~~~~~~~~~~~~~~~~~~ 568 (729)
T 3l7i_A 491 EIFRSAFWMDEERILEI-GYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAP-TWRDDEFVSKGKYLFELKIDLDN 568 (729)
T ss_dssp HHHHHHTCCCGGGEEES-CCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECC-CCCGGGCCGGGSSCCCCTTCHHH
T ss_pred HHHHHHhCCCcceEEEc-CCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEee-eeeCCccccccccccchhhHHHH
Confidence 22223333 2344433 433221111 1111122567889999999999999997 322210 0 0011111333
Q ss_pred HHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCcc
Q 004092 360 LLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFP 439 (774)
Q Consensus 360 ~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp 439 (774)
+..... ++ ..+++-.-|.. .......++.+ .+.......++.++|..||++|.= ++
T Consensus 569 l~~~l~--~~-------~~li~r~Hp~~-------~~~~~~~~~~~-~~~~~~~~~di~~ll~~aD~lITD-------yS 624 (729)
T 3l7i_A 569 LYKELG--DD-------YVILLRMHYLI-------SNALDLSGYEN-FAIDVSNYNDVSELFLISDCLITD-------YS 624 (729)
T ss_dssp HHHHHT--TT-------EEEEECCCHHH-------HTTCCCTTCTT-TEEECTTCSCHHHHHHTCSEEEES-------SC
T ss_pred HHHHcC--CC-------eEEEEecCcch-------hccccccccCC-cEEeCCCCcCHHHHHHHhCEEEee-------ch
Confidence 333221 12 56655442210 00000013444 566555556999999999999853 57
Q ss_pred HHHHHHHHcCCCEEEcCCccccccc----------ccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 440 EILVKALCFRKPIIAPDLSNIRKYV----------DDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 440 ~~llEAMA~G~PVIatd~ggi~EiV----------~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.++.|++..++|||-.... ..++. .+..-|.++. |.++|.++|......
T Consensus 625 Sv~fD~~~l~kPiif~~~D-~~~Y~~~~rg~y~d~~~~~pg~~~~--~~~eL~~~i~~~~~~ 683 (729)
T 3l7i_A 625 SVMFDYGILKRPQFFFAYD-IDKYDKGLRGFYMNYMEDLPGPIYT--EPYGLAKELKNLDKV 683 (729)
T ss_dssp THHHHHGGGCCCEEEECTT-TTTTTSSCCSBSSCTTSSSSSCEES--SHHHHHHHHTTHHHH
T ss_pred HHHHhHHhhCCCEEEecCC-HHHHhhccCCcccChhHhCCCCeEC--CHHHHHHHHhhhhcc
Confidence 7999999999999975221 11111 1112344443 789999999877654
No 64
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=91.94 E-value=5.6 Score=47.28 Aligned_cols=139 Identities=12% Similarity=-0.000 Sum_probs=86.5
Q ss_pred CCCEEEEEEecccccccccccHHH-HHHHHHHc---hhhc-----ccC-CCCCCCeEEEEEe-CCCCCchHHHHHHHHHH
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPL---FSEV-----SVE-NESNSPIKVMILS-GDSTSNYSVVIEAIAHN 400 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~l-LLeA~~~L---~~~~-----p~~-~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~ 400 (774)
++..+++++- |+..- |.+.+ ++..+..+ +... |+. +..-.+..+++.| ..........+.+++..
T Consensus 598 p~sLfdvq~K-R~heY---KRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~ 673 (879)
T 1ygp_A 598 DDTLFDMQVK-RIHEY---KRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINC 673 (879)
T ss_dssp GGCEEEEEES-CCCGG---GTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCeeeeeeee-hhhHh---HHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHH
Confidence 4566666666 66665 88888 66665544 2220 210 0001237777777 33233333444444443
Q ss_pred cC--------CCC-ccEEEcc-Cc-ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccccccc--C
Q 004092 401 LH--------YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--R 467 (774)
Q Consensus 401 lg--------L~~-~~V~flG-~~-~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV~d--g 467 (774)
.. +.+ -+|.|+. +. +-...++.+||+-..-|...-+..|..=+-+|.-|.+.|+|--|...|+.++ +
T Consensus 674 va~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~ 753 (879)
T 1ygp_A 674 VADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGE 753 (879)
T ss_dssp HHHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCG
T ss_pred HHHHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCc
Confidence 21 111 0477776 33 6667789999999988754222677778999999999999998988888754 4
Q ss_pred ccEEEEc
Q 004092 468 VNGYLFP 474 (774)
Q Consensus 468 ~~G~Lv~ 474 (774)
+|+++|-
T Consensus 754 eN~fiFG 760 (879)
T 1ygp_A 754 DNVFLFG 760 (879)
T ss_dssp GGSEEES
T ss_pred ccEEEcc
Confidence 5788775
No 65
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=87.65 E-value=1.2 Score=46.87 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=77.8
Q ss_pred hCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEE-eCCCCCchHHHHHHHHHHcCCCCc
Q 004092 328 MGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMIL-SGDSTSNYSVVIEAIAHNLHYPLG 406 (774)
Q Consensus 328 lgl~~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIv-GG~~~e~Y~~~L~~la~~lgL~~~ 406 (774)
.+..++..+++..|++. ..|.| ..+...+.+..|.+. + ++++++ |++.+. +..+++++ ..++
T Consensus 173 ~~~~~~~~i~l~pga~~-~~k~w-p~~~~~~l~~~L~~~--~-------~~vvl~~g~~~e~---~~~~~i~~--~~~~- 235 (326)
T 2gt1_A 173 LPTDAGEYAVFLHATTR-DDKHW-PEEHWRELIGLLADS--G-------IRIKLPWGAPHEE---ERAKRLAE--GFAY- 235 (326)
T ss_dssp CCTTTTSEEEEECCCSS-GGGSC-CHHHHHHHHHHTTTT--C-------CEEEECCSSHHHH---HHHHHHHT--TCTT-
T ss_pred ccccCCCEEEEEeCCCC-ccccC-CHHHHHHHHHHHHHC--C-------CcEEEecCCHHHH---HHHHHHHh--hCCc-
Confidence 34445566777788553 33333 344566777777543 3 778887 444321 23344444 3333
Q ss_pred cEEEccCc--ccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCccccccc-ccCccEEEE-------cCC
Q 004092 407 VVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYV-DDRVNGYLF-------PKE 476 (774)
Q Consensus 407 ~V~flG~~--~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~EiV-~dg~~G~Lv-------~~~ 476 (774)
+.+.|.. .++..+++.||++|..- .|..=+ |.|+|+|+|+--.+..+... .-+....++ ..=
T Consensus 236 -~~l~g~~sl~el~ali~~a~l~I~~D------SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I 307 (326)
T 2gt1_A 236 -VEVLPKMSLEGVARVLAGAKFVVSVD------TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQL 307 (326)
T ss_dssp -EEECCCCCHHHHHHHHHTCSEEEEES------SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGC
T ss_pred -ccccCCCCHHHHHHHHHhCCEEEecC------CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCC
Confidence 6677743 88999999999999773 133333 77899999884222111111 011111111 112
Q ss_pred CHHHHHHHHHHHHHc
Q 004092 477 NIKALTHIILQVITN 491 (774)
Q Consensus 477 d~e~La~aI~~Ll~d 491 (774)
++++..+++.++++.
T Consensus 308 ~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 308 TANAVKQFIEENAEK 322 (326)
T ss_dssp CHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHH
Confidence 577777777777654
No 66
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=74.10 E-value=23 Score=31.28 Aligned_cols=111 Identities=10% Similarity=0.115 Sum_probs=74.6
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+.... .....++...++.+... .|.......+....+.. .|++++-..... .-|..+++.+.. .
T Consensus 6 ~~ILivdd~~--~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 6 KRVLVVEDNP--DDIALIRRVLDRKDIHC-QLEFVDNGAKALYQVQQAKYDLIILDIGLPI-ANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp EEEEEECCCH--HHHHHHHHHHHHTTCCE-EEEEESSHHHHHHHHTTCCCSEEEECTTCGG-GCHHHHHHHHHSSSTTTT
T ss_pred CEEEEEeCCH--HHHHHHHHHHHhcCCCe-eEEEECCHHHHHHHhhcCCCCEEEEeCCCCC-CCHHHHHHHHHhcccccC
Confidence 6788887422 23466777777776654 46666655666666654 578887654432 457778888765 5
Q ss_pred CCEEE-cCCcc---cccccccCccEEEEcCC-CHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKE-NIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~gg---i~EiV~dg~~G~Lv~~~-d~e~La~aI~~Ll~d 491 (774)
+|||. |.... ..+.+..|..+++..|. +.++|.++|..+++.
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 78766 33222 23455678889999999 999999999988864
No 67
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=73.94 E-value=36 Score=34.07 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=56.1
Q ss_pred CCCeEEEEecC-----CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCcc
Q 004092 143 RKPQLALVFPD-----LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYD 217 (774)
Q Consensus 143 rk~rialV~~~-----L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~D 217 (774)
+..+|+++++. +...-....+..+.+.+.+.||++.++...... . . .......+...++|
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~-~-------------~~~~~~~~~~~~vd 71 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEE-E-I-------------FNGVVKMVQGRQIG 71 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHH-H-H-------------HHHHHHHHHTTCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCH-H-H-------------HHHHHHHHHcCCCC
Confidence 56789999998 776777778888889999999998876433211 0 0 01223345567899
Q ss_pred EEEEcCCchh-HHHHHHHhCCCCCCCEEEEEc
Q 004092 218 GILVNSLEAK-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 218 IIhvhs~~~~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
.|++...... ..+..+. ..++|+|+.-.
T Consensus 72 giIi~~~~~~~~~~~~l~---~~~iPvV~~~~ 100 (292)
T 3k4h_A 72 GIILLYSRENDRIIQYLH---EQNFPFVLIGK 100 (292)
T ss_dssp EEEESCCBTTCHHHHHHH---HTTCCEEEESC
T ss_pred EEEEeCCCCChHHHHHHH---HCCCCEEEECC
Confidence 9988654422 2333332 24689887543
No 68
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=73.18 E-value=26 Score=30.32 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH---------cCEEEEcCccCcCCccHHHHHHHH
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT---------ADVVIYGSFLEEQTFPEILVKALC 447 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a---------aDI~V~PS~~E~qGfp~~llEAMA 447 (774)
.+++|+.... .....+....+..+... .|.......+....+.. .|++++-..... .-|..+++.+.
T Consensus 3 ~~ilivdd~~--~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~ 78 (140)
T 1k68_A 3 KKIFLVEDNK--ADIRLIQEALANSTVPH-EVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGREVLAEIK 78 (140)
T ss_dssp CEEEEECCCH--HHHHHHHHHHHTCSSCC-EEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHHHHHHHHH
T ss_pred CeEEEEeCCH--HHHHHHHHHHHhcCCCc-eEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCc-ccHHHHHHHHH
Confidence 4677777322 23366777777666654 57666666677777664 788887654432 35667777765
Q ss_pred -----cCCCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 448 -----FRKPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 448 -----~G~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
..+|||. |.... ..+.+..|..+++..|-+.++|..+|..++..
T Consensus 79 ~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 79 SDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp HSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHH
Confidence 3577765 33332 23445678889999999999999999888765
No 69
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=71.93 E-value=25 Score=31.46 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=74.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH-----------HcCEEEEcCccCcCCccHHHHHH
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN-----------TADVVIYGSFLEEQTFPEILVKA 445 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~-----------aaDI~V~PS~~E~qGfp~~llEA 445 (774)
.+++|+.... .....++...++.+... .|.......+....+. ..|++++-..... .-|..+++.
T Consensus 5 ~~ILivddd~--~~~~~l~~~L~~~g~~~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~-~~g~~~~~~ 80 (152)
T 3heb_A 5 VTIVMIEDDL--GHARLIEKNIRRAGVNN-EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPD-MTGIDILKL 80 (152)
T ss_dssp CEEEEECCCH--HHHHHHHHHHHHTTCCC-CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSS-SBHHHHHHH
T ss_pred ceEEEEeCCH--HHHHHHHHHHHhCCCcc-eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCC-CcHHHHHHH
Confidence 6777887322 23467778888878764 5776666666666663 4688887654432 457788887
Q ss_pred HHc-----CCCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHH
Q 004092 446 LCF-----RKPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVIT 490 (774)
Q Consensus 446 MA~-----G~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~ 490 (774)
+.. .+|||. |.... ..+.+..|..+++..|-++++|.++|.++..
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 765 567765 33332 2345567888999999999999999987754
No 70
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=67.50 E-value=1e+02 Score=30.70 Aligned_cols=90 Identities=11% Similarity=0.043 Sum_probs=54.6
Q ss_pred CCCeEEEEecCC-CCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCc-chhhhhhcCccEEEcccchhHHHHhhhcCccEE
Q 004092 143 RKPQLALVFPDL-LIDPQQLQMVTIAIALREI-GYAIQVYSLEDGR-AHEVWRNIGVPVAILQTGREKASFVNWLNYDGI 219 (774)
Q Consensus 143 rk~rialV~~~L-~~GG~e~~v~~Lak~L~~~-G~eV~V~t~~~~~-~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DII 219 (774)
++.+|++++++. ...-....+..+.+.+.+. ||.+.+....... ..... ......+...++|.|
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~-------------~~~i~~l~~~~vdgi 73 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSF-------------VATSQAVIEEQPDGV 73 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHH-------------HHHHHHHHTTCCSEE
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHH-------------HHHHHHHHhcCCCEE
Confidence 457799999998 5666666777788888888 9999887653211 11000 111223445789999
Q ss_pred EEcCCchh---HHHHHHHhCCCCCCCEEEEEc
Q 004092 220 LVNSLEAK---VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 220 hvhs~~~~---~~l~~Ll~~~~~~ipvI~tiH 248 (774)
++...... ..+..+. ..++|+|+.-.
T Consensus 74 ii~~~~~~~~~~~~~~~~---~~~iPvV~~~~ 102 (304)
T 3gbv_A 74 MFAPTVPQYTKGFTDALN---ELGIPYIYIDS 102 (304)
T ss_dssp EECCSSGGGTHHHHHHHH---HHTCCEEEESS
T ss_pred EECCCChHHHHHHHHHHH---HCCCeEEEEeC
Confidence 98875432 1233222 23689886544
No 71
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=66.03 E-value=34 Score=30.16 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=71.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+..... ....+.......|. .|.......+....+.. .|++|+-..... .-|..+++.+.. .
T Consensus 9 ~~iLivd~~~~--~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ 82 (147)
T 2zay_A 9 WRIMLVDTQLP--ALAASISALSQEGF---DIIQCGNAIEAVPVAVKTHPHLIITEANMPK-ISGMDLFNSLKKNPQTAS 82 (147)
T ss_dssp EEEEEECTTGG--GGHHHHHHHHHHTE---EEEEESSHHHHHHHHHHHCCSEEEEESCCSS-SCHHHHHHHHHTSTTTTT
T ss_pred ceEEEEeCCHH--HHHHHHHHHHHcCC---eEEEeCCHHHHHHHHHcCCCCEEEEcCCCCC-CCHHHHHHHHHcCcccCC
Confidence 78888883321 22566666665554 35555555555555543 688887654332 457778888764 5
Q ss_pred CCEEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |..... .+.+..|..+++..|-+.++|..+|..++..
T Consensus 83 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 83 IPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp SCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 77765 433332 2345678889999999999999999988875
No 72
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=65.33 E-value=73 Score=28.19 Aligned_cols=108 Identities=7% Similarity=0.073 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH---cCEEEEcCccCcCCccHHHHHHHH---cCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT---ADVVIYGSFLEEQTFPEILVKALC---FRK 450 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a---aDI~V~PS~~E~qGfp~~llEAMA---~G~ 450 (774)
.+++|+.... .....+....+ -.- .|.......+....+.. .|++++-..... .-|..+++.+. ...
T Consensus 5 ~~ILivdd~~--~~~~~l~~~L~---~~~-~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ 77 (151)
T 3kcn_A 5 ERILLVDDDY--SLLNTLKRNLS---FDF-EVTTCESGPEALACIKKSDPFSVIMVDMRMPG-MEGTEVIQKARLISPNS 77 (151)
T ss_dssp CEEEEECSCH--HHHHHHHHHHT---TTS-EEEEESSHHHHHHHHHHSCCCSEEEEESCCSS-SCHHHHHHHHHHHCSSC
T ss_pred CeEEEEeCCH--HHHHHHHHHhc---cCc-eEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCc
Confidence 5777777322 12234444443 223 56655555666666654 388887554332 45666776654 356
Q ss_pred CEEE-cCCcc---cccccccC-ccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 451 PIIA-PDLSN---IRKYVDDR-VNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa-td~gg---i~EiV~dg-~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|||. |.... ..+.+..| ..+++..|-+.++|..+|..++..
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 78 VYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 7665 33332 23445566 789999999999999999999876
No 73
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=63.49 E-value=72 Score=27.65 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+.... .....+....+..|. .|......++....+.. .|++++-..... .-|..+++.+.. .
T Consensus 8 ~~iLivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ 81 (142)
T 3cg4_A 8 GDVMIVDDDA--HVRIAVKTILSDAGF---HIISADSGGQCIDLLKKGFSGVVLLDIMMPG-MDGWDTIRAILDNSLEQG 81 (142)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHTCCCEEEEEESCCSS-SCHHHHHHHHHHTTCCTT
T ss_pred CeEEEEcCCH--HHHHHHHHHHHHCCe---EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCC
Confidence 6788887332 233666777776654 46555555666666654 577776544332 456778887764 4
Q ss_pred CCEEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |... ...+.+..|..+++..|-+.++|.++|..++..
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 82 IAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 67665 3322 234455667789999999999999999888765
No 74
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=63.02 E-value=61 Score=27.56 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=69.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+.... .....++...+..+... |.......+....+.. .|++++-..... .-|..+++.+.. .
T Consensus 5 ~~ilivdd~~--~~~~~l~~~l~~~~~~~--v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g~~l~~~l~~~~~~~~ 79 (128)
T 1jbe_A 5 LKFLVVDDFS--TMRRIVRNLLKELGFNN--VEEAEDGVDALNKLQAGGYGFVISDWNMPN-MDGLELLKTIRAXXAMSA 79 (128)
T ss_dssp CCEEEECSCH--HHHHHHHHHHHHTTCCC--EEEESSHHHHHHHHTTCCCCEEEEESCCSS-SCHHHHHHHHHC--CCTT
T ss_pred cEEEEECCCH--HHHHHHHHHHHHcCCcE--EEeeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCC
Confidence 5677777322 23356667777666543 5555544555555543 588876544332 356778888764 4
Q ss_pred CCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHH
Q 004092 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVIT 490 (774)
Q Consensus 450 ~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~ 490 (774)
+|||. |.... ..+.+..|..+++..|-+.+++.++|..++.
T Consensus 80 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 80 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 67765 33332 2344567888999999999999999988765
No 75
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=62.27 E-value=46 Score=29.06 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=71.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH----HcCEEEEcCccCcCCccHHHHHHHHc---C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN----TADVVIYGSFLEEQTFPEILVKALCF---R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~----aaDI~V~PS~~E~qGfp~~llEAMA~---G 449 (774)
.+++|+.... .....++...++.+. .|......++....+. ..|++++-..... .-|..+++.+.. .
T Consensus 4 ~~ilivdd~~--~~~~~l~~~l~~~g~---~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~ 77 (143)
T 3jte_A 4 AKILVIDDES--TILQNIKFLLEIDGN---EVLTASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGMDILREIKKITPH 77 (143)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHHHHHHHHHHHCTT
T ss_pred CEEEEEcCCH--HHHHHHHHHHHhCCc---eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCC
Confidence 5777777322 234667777776553 4555555556666665 5788887654432 456667766543 5
Q ss_pred CCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |.... ..+.+..|..+++..|-+.++|..+|..++..
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 78 MAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp CEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 67765 33332 33456778889999999999999999998876
No 76
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=61.49 E-value=56 Score=28.29 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=72.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHH-cCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHN-LHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF----- 448 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~-lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~----- 448 (774)
.+++|+.... .....+....+. .+... |......++....+.. .|++++-..... .-|..+++.+..
T Consensus 9 ~~iLivdd~~--~~~~~l~~~L~~~~~~~~--v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 9 FSILIIEDDK--EFADMLTQFLENLFPYAK--IKIAYNPFDAGDLLHTVKPDVVMLDLMMVG-MDGFSICHRIKSTPATA 83 (143)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHHCTTCE--EEEECSHHHHHHHHHHTCCSEEEEETTCTT-SCHHHHHHHHHTSTTTT
T ss_pred ceEEEEECCH--HHHHHHHHHHHhccCccE--EEEECCHHHHHHHHHhcCCCEEEEecccCC-CcHHHHHHHHHhCcccc
Confidence 6788887322 223566676665 55542 6666555566666554 688887654432 356777887765
Q ss_pred CCCEEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 449 RKPIIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 449 G~PVIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.+|||. |..... .+.+..|..+++..|-+.++|.++|..++..
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 467765 433322 3445678889999999999999999999876
No 77
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=60.68 E-value=59 Score=28.80 Aligned_cols=110 Identities=12% Similarity=0.159 Sum_probs=69.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH---------HcCEEEEcCccCcCCccHHHHHHHH
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN---------TADVVIYGSFLEEQTFPEILVKALC 447 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~---------aaDI~V~PS~~E~qGfp~~llEAMA 447 (774)
.+++|+.... .....++...+..+... .|.......+...++. ..|++++=..... .-|..+++.+.
T Consensus 9 ~~ILivdd~~--~~~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~-~~g~~l~~~l~ 84 (149)
T 1i3c_A 9 KVILLVEDSK--ADSRLVQEVLKTSTIDH-ELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPK-KDGREVLAEIK 84 (149)
T ss_dssp EEEEEECCCH--HHHHHHHHHHHSCCSCE-EEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSS-SCHHHHHHHHH
T ss_pred CeEEEEECCH--HHHHHHHHHHHhcCCCc-cEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCC-CcHHHHHHHHH
Confidence 6778887322 23355666666555432 3555555456666665 3688887554432 34667777775
Q ss_pred c-----CCCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHH
Q 004092 448 F-----RKPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVIT 490 (774)
Q Consensus 448 ~-----G~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~ 490 (774)
. .+|||. |.... ..+.+..|..|++..|-+.++|.++|..++.
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 3 467765 33332 2344567888999999999999999887764
No 78
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=60.33 E-value=37 Score=29.66 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=72.9
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH-------cCEEEEcCccCcCCccHHHHHHHHc-
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT-------ADVVIYGSFLEEQTFPEILVKALCF- 448 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a-------aDI~V~PS~~E~qGfp~~llEAMA~- 448 (774)
.+++|+.... .....+....+..+... .|.......+....+.. .|++++-..... .-|..+++.+..
T Consensus 10 ~~iLivdd~~--~~~~~l~~~l~~~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 10 DSVLLIDDDD--IVNFLNTTIIRMTHRVE-EIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPG-INGWELIDLFKQH 85 (146)
T ss_dssp EEEEEECSCH--HHHHHHHHHHHTTCCEE-EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSS-SCHHHHHHHHHHH
T ss_pred ceEEEEeCCH--HHHHHHHHHHHhcCCCe-eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCC-CCHHHHHHHHHHh
Confidence 6788887432 23356667777555532 45555555666666665 788887654442 457778877654
Q ss_pred ------CCCEEE-cCCcc---cccccccC-ccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 449 ------RKPIIA-PDLSN---IRKYVDDR-VNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 449 ------G~PVIa-td~gg---i~EiV~dg-~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
..|||. |.... ..+.+..| ..+++..|-+.++|.++|.+....
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 566655 33332 22344566 788999999999999999998876
No 79
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=59.55 E-value=72 Score=27.34 Aligned_cols=110 Identities=19% Similarity=0.168 Sum_probs=70.6
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH---HcCEEEEcCccCcCCccHHHHHHHHc-----
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN---TADVVIYGSFLEEQTFPEILVKALCF----- 448 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~---aaDI~V~PS~~E~qGfp~~llEAMA~----- 448 (774)
.+++|+... ......++...++.|... |.......+....+. ..|++++-..... .-|..+++.+..
T Consensus 6 ~~iLivdd~--~~~~~~l~~~L~~~g~~~--v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~-~~g~~~~~~lr~~~~~~ 80 (129)
T 3h1g_A 6 MKLLVVDDS--STMRRIIKNTLSRLGYED--VLEAEHGVEAWEKLDANADTKVLITDWNMPE-MNGLDLVKKVRSDSRFK 80 (129)
T ss_dssp CCEEEECSC--HHHHHHHHHHHHHTTCCC--EEEESSHHHHHHHHHHCTTCCEEEECSCCSS-SCHHHHHHHHHTSTTCT
T ss_pred cEEEEEeCC--HHHHHHHHHHHHHcCCcE--EEEeCCHHHHHHHHHhCCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 567777632 123466777777777654 555544444444443 3688876544332 457788887764
Q ss_pred CCCEEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 449 RKPIIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 449 G~PVIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.+|||. |..... .+.+..|..+++..|-++++|.++|..++..
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 81 EIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 568765 333322 3445678889999999999999999988764
No 80
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=58.51 E-value=41 Score=33.63 Aligned_cols=93 Identities=8% Similarity=-0.060 Sum_probs=56.3
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEE
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIh 220 (774)
+.+..+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|+
T Consensus 2 s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI 66 (291)
T 3l49_A 2 SLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQT-Q--------------VSQIQTLIAQKPDAII 66 (291)
T ss_dssp CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHHCCSEEE
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHH-H--------------HHHHHHHHHcCCCEEE
Confidence 456788999999877555566777888899999999998865432211 0 0112223346899999
Q ss_pred EcCCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 221 VNSLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 221 vhs~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
+........-..+......++|+|..-.
T Consensus 67 i~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 67 EQLGNLDVLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp EESSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred EeCCChhhhHHHHHHHHHCCCcEEEecC
Confidence 8765421111111111134689876543
No 81
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=58.13 E-value=38 Score=34.19 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=55.3
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
++.+|++|.++....-....+..+.+.+.+.||++.++........... .....+...++|.|++.
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~--------------~~i~~l~~~~vdgiIi~ 68 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQI--------------TVLEQAIAKNPAGIAIS 68 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHH--------------HHHHHHHHHCCSEEEEC
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHH--------------HHHHHHHHhCCCEEEEc
Confidence 3578999999988777777888888999999999988654332211111 11222334689999987
Q ss_pred CCchh---HHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAK---VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~---~~l~~Ll~~~~~~ipvI~tiH 248 (774)
..... ..+..+. ..++|+|+.-.
T Consensus 69 ~~~~~~~~~~~~~~~---~~~iPvV~~~~ 94 (305)
T 3g1w_A 69 AIDPVELTDTINKAV---DAGIPIVLFDS 94 (305)
T ss_dssp CSSTTTTHHHHHHHH---HTTCCEEEESS
T ss_pred CCCHHHHHHHHHHHH---HCCCcEEEECC
Confidence 54432 1232222 34689886544
No 82
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=58.08 E-value=47 Score=29.48 Aligned_cols=112 Identities=12% Similarity=0.139 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc---CC
Q 004092 376 PIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RK 450 (774)
Q Consensus 376 ~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~---G~ 450 (774)
..+++|+.... .....+....+..+-.. .|......++....+.. .|++++-..... .-|..+++.+.. .+
T Consensus 20 m~~iLivdd~~--~~~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 20 HMKVLVAEDQS--MLRDAMCQLLTLQPDVE-SVLQAKNGQEAIQLLEKESVDIAILDVEMPV-KTGLEVLEWIRSEKLET 95 (150)
T ss_dssp CEEEEEECSCH--HHHHHHHHHHHTSTTEE-EEEEESSHHHHHHHHTTSCCSEEEECSSCSS-SCHHHHHHHHHHTTCSC
T ss_pred ccEEEEEcCCH--HHHHHHHHHHHhCCCcE-EEEEECCHHHHHHHhhccCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCC
Confidence 37888888432 23355666666433212 35555555566666653 588887654432 456777777654 56
Q ss_pred CEEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 451 PIIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|||. |... ...+.+..|..+++..|-+.++|.++|..++..
T Consensus 96 ~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 96 KVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 7655 3333 233456778889999999999999999999876
No 83
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=57.36 E-value=60 Score=28.29 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH------------cCEEEEcCccCcCCccHHHHH
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT------------ADVVIYGSFLEEQTFPEILVK 444 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a------------aDI~V~PS~~E~qGfp~~llE 444 (774)
.+++|+.... .....++...++.+... .|......++....+.. .|++++-..... .-|..+++
T Consensus 7 ~~iLivdd~~--~~~~~l~~~L~~~g~~~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~ 82 (149)
T 1k66_A 7 QPLLVVEDSD--EDFSTFQRLLQREGVVN-PIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPG-TDGREVLQ 82 (149)
T ss_dssp SCEEEECCCH--HHHHHHHHHHHHTTBCS-CEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSS-SCHHHHHH
T ss_pred ccEEEEECCH--HHHHHHHHHHHHcCCCc-eEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCC-CCHHHHHH
Confidence 5677777322 23366777777777653 46666666666666653 688887654432 35677777
Q ss_pred HHH-----cCCCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 445 ALC-----FRKPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 445 AMA-----~G~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.+. ..+|||. |.... ..+.+..|..+++..|-+.++|.++|..++..
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 775 4567765 33332 23445678889999999999999999888764
No 84
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=56.96 E-value=74 Score=28.25 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=67.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+.... .....+.......|. .|.......+....+. ..|++++-..... .-|..+++.+. ..+|
T Consensus 4 ~~ILivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~p 77 (155)
T 1qkk_A 4 PSVFLIDDDR--DLRKAMQQTLELAGF---TVSSFASATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLP 77 (155)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESCHHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSC
T ss_pred CEEEEEeCCH--HHHHHHHHHHHHcCc---EEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCC
Confidence 5777777322 223556666665554 3554444444444443 3588877554332 34666666664 3678
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..|..+++..|-+.++|..+|..++..
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 78 MILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 765 33332 23445678889999999999999999998876
No 85
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=56.96 E-value=56 Score=28.98 Aligned_cols=113 Identities=8% Similarity=0.087 Sum_probs=72.3
Q ss_pred CCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc---C
Q 004092 375 SPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF---R 449 (774)
Q Consensus 375 ~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~---G 449 (774)
...+++|+.... .....++....+.+... .|.......+....+. ..|++++-..... .-|..+++.+.. .
T Consensus 14 ~~~~iLivdd~~--~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 14 EKVRVVVGDDHP--LFREGVVRALSLSGSVN-VVGEADDGAAALELIKAHLPDVALLDYRMPG-MDGAQVAAAVRSYELP 89 (152)
T ss_dssp CCEEEEEECSSH--HHHHHHHHHHHHHSSEE-EEEEESSHHHHHHHHHHHCCSEEEEETTCSS-SCHHHHHHHHHHTTCS
T ss_pred ceEEEEEEcCCH--HHHHHHHHHHhhCCCeE-EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhcCCC
Confidence 347888888422 23356667777655332 2434444455555554 4688887654432 456777776654 4
Q ss_pred CCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |.... ..+.+..|..+++..|-+.++|.++|..++..
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 66665 33332 23455678889999999999999999999987
No 86
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=54.62 E-value=33 Score=36.27 Aligned_cols=105 Identities=13% Similarity=0.030 Sum_probs=57.5
Q ss_pred ccccCCCCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEc-CC-----CcchhhhhhcCccEEEcccc----
Q 004092 135 RKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSL-ED-----GRAHEVWRNIGVPVAILQTG---- 204 (774)
Q Consensus 135 ~~~~r~~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~-~~-----~~~~~~~~~~gi~i~~l~~~---- 204 (774)
..+.....+++||+++ |+ ......+.+.|.+.||+|..+.. .+ .+........++++......
T Consensus 13 ~~~~~~~~~~mrIvf~------G~-~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~ 85 (329)
T 2bw0_A 13 LGTENLYFQSMKIAVI------GQ-SLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKG 85 (329)
T ss_dssp --------CCCEEEEE------CC-HHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETT
T ss_pred cccccccCCCCEEEEE------cC-cHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccc
Confidence 3344445677899888 33 34445566788888998864443 22 22333446678887766532
Q ss_pred ---hhHHHHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc
Q 004092 205 ---REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG 250 (774)
Q Consensus 205 ---~~l~~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~ 250 (774)
..+...++..++|+|++-..... +-..++.... .. ++.+|..
T Consensus 86 ~~~~~~~~~l~~~~~Dliv~a~y~~i-lp~~il~~~~--~g-~iNiHpS 130 (329)
T 2bw0_A 86 QALPDVVAKYQALGAELNVLPFCSQF-IPMEIISAPR--HG-SIIYHPS 130 (329)
T ss_dssp EECHHHHHHHHTTCCSEEEESSCSSC-CCHHHHTCST--TC-EEEEESS
T ss_pred cccHHHHHHHHhcCCCEEEEeehhhh-CCHHHHhhCc--CC-EEEEcCC
Confidence 23455677789999998766431 2223332211 22 5689954
No 87
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=54.22 E-value=69 Score=27.82 Aligned_cols=111 Identities=8% Similarity=0.096 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--------cCEEEEcCccCcCCccHHHHHHHH-
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--------ADVVIYGSFLEEQTFPEILVKALC- 447 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--------aDI~V~PS~~E~qGfp~~llEAMA- 447 (774)
.+++|+.... .....+....++.+... .|.......+....+.. .|++++-..... .-|..+++.+.
T Consensus 8 ~~ILivdd~~--~~~~~l~~~L~~~g~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~~~~~~l~~ 83 (143)
T 2qvg_A 8 VDILYLEDDE--VDIQSVERVFHKISSLI-KIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPK-MNGIEFLKELRD 83 (143)
T ss_dssp CSEEEECCCH--HHHHHHHHHHHHHCTTC-CEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHHHHHHHHTT
T ss_pred CeEEEEeCCH--HHHHHHHHHHHHhCCCc-eEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCC-CCHHHHHHHHHc
Confidence 5777787322 22366777777777654 57777766677777653 688887654332 34667777775
Q ss_pred ----cCCCEEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 448 ----FRKPIIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 448 ----~G~PVIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
..+|||. +... ...+.+..|..+++..|-+.++|.+++......
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred CccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 4577765 3333 223455678889999999999999997765543
No 88
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=53.62 E-value=35 Score=30.38 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHc-CCCCccEEEccCcccHHHHHHH---cCEEEEcCccCcCCccHHHHHHHH---cC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNL-HYPLGVVKHMAAEGDVDSVLNT---ADVVIYGSFLEEQTFPEILVKALC---FR 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~l-gL~~~~V~flG~~~dl~~~l~a---aDI~V~PS~~E~qGfp~~llEAMA---~G 449 (774)
.+++|+.... .....++...++. +.. .|.......+....+.. .|++++-..... .-|..+++.+. ..
T Consensus 4 ~~iLivdd~~--~~~~~l~~~L~~~~g~~--~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~ 78 (154)
T 2qsj_A 4 TVVLIVDDHH--LIRAGAKNLLEGAFSGM--RVEGAETVSDALAFLEADNTVDLILLDVNLPD-AEAIDGLVRLKRFDPS 78 (154)
T ss_dssp EEEEEECSCH--HHHHHHHHHHHHHCTTE--EEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTT
T ss_pred cEEEEEcCCH--HHHHHHHHHHHhCCCce--EEEEecCHHHHHHHHhccCCCCEEEEeCCCCC-CchHHHHHHHHHhCCC
Confidence 6778887322 2235666666655 442 35566666677777665 688887553332 34666666664 36
Q ss_pred CCEEEc-CCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIAP-DLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIat-d~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||.. ... ...+.+..|..+++..|-+.++|.++|..++..
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 79 NAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp SEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 787763 222 223445677889999999999999999999876
No 89
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=50.25 E-value=92 Score=30.80 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=58.0
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
.+..+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiIi 69 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIER-E--------------KTLLRAIGSRGFDGLIL 69 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHH-H--------------HHHHHHHHTTTCSEEEE
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHhCCCCEEEE
Confidence 45678999999986666677777888889999999998875432211 0 11223344578999998
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 222 NSLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 222 hs~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
........+..+. ..++|+|+.-.
T Consensus 70 ~~~~~~~~~~~l~---~~~iPvV~i~~ 93 (276)
T 3jy6_A 70 QSFSNPQTVQEIL---HQQMPVVSVDR 93 (276)
T ss_dssp ESSCCHHHHHHHH---TTSSCEEEESC
T ss_pred ecCCcHHHHHHHH---HCCCCEEEEec
Confidence 7655422333332 35789886533
No 90
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=50.00 E-value=47 Score=33.77 Aligned_cols=87 Identities=9% Similarity=0.069 Sum_probs=55.2
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
+.+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++..
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgiIi~~ 66 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEET-Q--------------MSQIENMINRGVDVLVIIP 66 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHH-H--------------HHHHHHHHHcCCCEEEEeC
Confidence 467999999887666677888888999999999998875332211 1 0112233346899998876
Q ss_pred Cchh---HHHHHHHhCCCCCCCEEEEEc
Q 004092 224 LEAK---VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 224 ~~~~---~~l~~Ll~~~~~~ipvI~tiH 248 (774)
.... ..+..+. ..++|+|..-.
T Consensus 67 ~~~~~~~~~~~~~~---~~~iPvV~~~~ 91 (313)
T 3m9w_A 67 YNGQVLSNVVKEAK---QEGIKVLAYDR 91 (313)
T ss_dssp SSTTSCHHHHHHHH---TTTCEEEEESS
T ss_pred CChhhhHHHHHHHH---HCCCeEEEECC
Confidence 5432 2233322 35789886544
No 91
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=49.46 E-value=29 Score=30.69 Aligned_cols=110 Identities=11% Similarity=0.101 Sum_probs=68.9
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHcC-CCCccEEEccCc-ccHHHHH---HHcCEEEEcCccCcCCccHHHHHHHHc--
Q 004092 376 PIKVMILSGDSTSNYSVVIEAIAHNLH-YPLGVVKHMAAE-GDVDSVL---NTADVVIYGSFLEEQTFPEILVKALCF-- 448 (774)
Q Consensus 376 ~v~LvIvGG~~~e~Y~~~L~~la~~lg-L~~~~V~flG~~-~dl~~~l---~aaDI~V~PS~~E~qGfp~~llEAMA~-- 448 (774)
..+++|+.... .....++...++.+ . .|...... +.+..+. ...|++++-..... .-|..+++.+..
T Consensus 20 ~~~ilivdd~~--~~~~~l~~~L~~~g~~---~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~ 93 (146)
T 4dad_A 20 MINILVASEDA--SRLAHLARLVGDAGRY---RVTRTVGRAAQIVQRTDGLDAFDILMIDGAALD-TAELAAIEKLSRLH 93 (146)
T ss_dssp GCEEEEECSCH--HHHHHHHHHHHHHCSC---EEEEECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCH--HHHHHHHHHHhhCCCe---EEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHHHHHHHHHHhC
Confidence 37888887322 23466777777666 4 23333332 3444443 45788887654332 345666666543
Q ss_pred -CCCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 449 -RKPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 449 -G~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.+|||. |.... ..+.+..|..+++..|-++++|..+|..++..
T Consensus 94 ~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 94 PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 567765 33332 23455678889999999999999999998875
No 92
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=49.36 E-value=40 Score=33.92 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=54.0
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
++.+|+++++++...-....+..+.+.+.+.||++.++........... ......+...++|.|++.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~vdgiii~ 70 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQ-------------EQQLALCTQWGANAIILG 70 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHH-------------HHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHH-------------HHHHHHHHHcCCCEEEEe
Confidence 5678999999886666666777788888999999999876541111000 011222334689999987
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
.......-..+.... .++|+|..
T Consensus 71 ~~~~~~~~~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 71 TVDPHAYEHNLKSWV-GNTPVFAT 93 (304)
T ss_dssp CSSTTSSTTTHHHHT-TTSCEEEC
T ss_pred CCChhHHHHHHHHHc-CCCCEEEe
Confidence 654320111111123 57898864
No 93
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=48.99 E-value=47 Score=32.71 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=54.1
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC-CcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~-~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
++|+++++++...-....+..+.+.+.+.||++.++.... .+..... ..+..++...++|.|++..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~i~~l~~~~~vdgii~~~ 67 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQI-------------QILSYHLSQAPPDALILAP 67 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHH-------------HHHHHHHHHSCCSEEEECC
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHH-------------HHHHHHHHhCCCCEEEEeC
Confidence 4789999988777777788888899999999998876432 1111110 1122333333399999877
Q ss_pred Cch---hHHHHHHHhCCCCCCCEEEEEc
Q 004092 224 LEA---KVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 224 ~~~---~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
... ...+..+. ..++|+|..-.
T Consensus 68 ~~~~~~~~~~~~~~---~~~ipvV~~~~ 92 (276)
T 3ksm_A 68 NSAEDLTPSVAQYR---ARNIPVLVVDS 92 (276)
T ss_dssp SSTTTTHHHHHHHH---HTTCCEEEESS
T ss_pred CCHHHHHHHHHHHH---HCCCcEEEEec
Confidence 432 12233322 34689887544
No 94
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=48.99 E-value=1e+02 Score=27.41 Aligned_cols=109 Identities=14% Similarity=0.199 Sum_probs=71.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH-----cC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC-----FR 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA-----~G 449 (774)
.+++|+.... .....++...++.|. .|......++....+.. .|++++-..... .-|..+++.+. ..
T Consensus 8 ~~ILivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~ 81 (154)
T 3gt7_A 8 GEILIVEDSP--TQAEHLKHILEETGY---QTEHVRNGREAVRFLSLTRPDLIISDVLMPE-MDGYALCRWLKGQPDLRT 81 (154)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHTTTC---EEEEESSHHHHHHHHTTCCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTT
T ss_pred CcEEEEeCCH--HHHHHHHHHHHHCCC---EEEEeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhCCCcCC
Confidence 6788887422 233566677775553 45555555566666553 688887654442 45777887775 35
Q ss_pred CCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |.... ..+.+..|..+++..|-+.++|..+|..++..
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 82 IPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp SCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 78765 33222 23445678889999999999999999999875
No 95
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=48.41 E-value=1.3e+02 Score=25.83 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+.... .....++...++.|. .|......++....+.. .|++++-..... .-|..+++.+.. .
T Consensus 7 ~~iLivdd~~--~~~~~l~~~l~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 7 PRILICEDDP--DIARLLNLMLEKGGF---DSDMVHSAAQALEQVARRPYAAMTVDLNLPD-QDGVSLIRALRRDSRTRD 80 (140)
T ss_dssp SEEEEECSCH--HHHHHHHHHHHHTTC---EEEEECSHHHHHHHHHHSCCSEEEECSCCSS-SCHHHHHHHHHTSGGGTT
T ss_pred CCEEEEcCCH--HHHHHHHHHHHHCCC---eEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhCcccCC
Confidence 5777887322 233566777776554 35555555555555543 588887654432 457788887765 6
Q ss_pred CCEEE-cCCcc---cc-cccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSN---IR-KYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~gg---i~-EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |.... .. +.+..|..+++..|-+.++|..+|..+++.
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 78766 33322 12 455667889999999999999999999876
No 96
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=47.53 E-value=77 Score=32.77 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=55.1
Q ss_pred CCCeEEEEecCCCC-ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhh-cCccEEE
Q 004092 143 RKPQLALVFPDLLI-DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNW-LNYDGIL 220 (774)
Q Consensus 143 rk~rialV~~~L~~-GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~-~~~DIIh 220 (774)
.+++|++++++... .-...+...+.+.+.+.|+++.++........ . ...+..++.. .++|.|+
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~-~-------------~~~i~~~i~~~~~vDgiI 67 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQN-T-------------LQQARELFQGRDKPDYLM 67 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHH-H-------------HHHHHHHHHSSSCCSEEE
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHH-H-------------HHHHHHHHhcCCCCCEEE
Confidence 46889999998765 34455666777888899999998864332111 1 1122344554 6899988
Q ss_pred EcCCchhHHHHHHHhCCCCCCCEEEEEcC
Q 004092 221 VNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (774)
Q Consensus 221 vhs~~~~~~l~~Ll~~~~~~ipvI~tiHg 249 (774)
+..... .....+......++|+|..-..
T Consensus 68 i~~~~~-~~~~~~~~~~~~giPvV~~~~~ 95 (350)
T 3h75_A 68 LVNEQY-VAPQILRLSQGSGIKLFIVNSP 95 (350)
T ss_dssp EECCSS-HHHHHHHHHTTSCCEEEEEESC
T ss_pred EeCchh-hHHHHHHHHHhCCCcEEEEcCC
Confidence 864222 1222222223467999876654
No 97
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=47.37 E-value=61 Score=29.08 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=66.1
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEE-EccCcccHHHHHHH----cCEEEEcCccCcCCccHHHHHHHH---c
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEGDVDSVLNT----ADVVIYGSFLEEQTFPEILVKALC---F 448 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~-flG~~~dl~~~l~a----aDI~V~PS~~E~qGfp~~llEAMA---~ 448 (774)
.+++|+.... .....++...++.+. .|. ......+....+.. .|++++-..... .-|..+++.+. .
T Consensus 37 ~~Ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~-~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 37 FNVLIVDDSV--FTVKQLTQIFTSEGF---NIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPK-MDGITCLSNIMEFDK 110 (157)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSS-SCHHHHHHHHHHHCT
T ss_pred eEEEEEeCCH--HHHHHHHHHHHhCCC---eEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCC-ccHHHHHHHHHhhCC
Confidence 5777776321 223556666665554 233 44444555555543 488887654432 45666776654 3
Q ss_pred CCCEEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHH
Q 004092 449 RKPIIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVIT 490 (774)
Q Consensus 449 G~PVIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~ 490 (774)
.+|||. |... ...+.+..|..+++..|-+.++|.++|..++.
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 577765 3322 22345567888999999999999999987753
No 98
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=46.98 E-value=1.3e+02 Score=26.40 Aligned_cols=109 Identities=10% Similarity=0.125 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+.... .....+....+..|. .|.......+....+.. .|++++-..... .-|..+++.+. ..+|
T Consensus 8 ~~iLivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 81 (154)
T 2rjn_A 8 YTVMLVDDEQ--PILNSLKRLIKRLGC---NIITFTSPLDALEALKGTSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIE 81 (154)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHTTTC---EEEEESCHHHHHHHHTTSCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSE
T ss_pred CeEEEEcCCH--HHHHHHHHHHHHcCC---eEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCc
Confidence 6788887432 223556666665443 45555555566666553 588887554332 34666666664 3677
Q ss_pred EEE-cCCcc---cccccccC-ccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDR-VNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg-~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..| ..+++..|-+.++|..+|..++..
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 82 RVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 765 33332 22334455 789999999999999999988876
No 99
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.66 E-value=53 Score=32.77 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
++.+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI~~ 71 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRIS-E--------------REQILEFVHLKVDAIFIT 71 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHH-H--------------HHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHH-H--------------HHHHHHHHHcCCCEEEEe
Confidence 4578999999876555666777788889999999998875432211 1 011222335689998886
Q ss_pred CCchh---HHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAK---VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~---~~l~~Ll~~~~~~ipvI~tiH 248 (774)
..... ..+..+. ..++|+|+.-.
T Consensus 72 ~~~~~~~~~~~~~~~---~~~iPvV~~~~ 97 (293)
T 3l6u_A 72 TLDDVYIGSAIEEAK---KAGIPVFAIDR 97 (293)
T ss_dssp CSCTTTTHHHHHHHH---HTTCCEEEESS
T ss_pred cCChHHHHHHHHHHH---HcCCCEEEecC
Confidence 55432 1233222 24689887543
No 100
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=46.64 E-value=1.3e+02 Score=25.43 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=65.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+.... .....++...+ ... .|......++....+.. .|++++-..... .-|..+++.+.. .
T Consensus 5 ~~ilivdd~~--~~~~~l~~~l~---~~~-~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 77 (133)
T 3nhm_A 5 PKVLIVENSW--TMRETLRLLLS---GEF-DCTTAADGASGLQQALAHPPDVLISDVNMDG-MDGYALCGHFRSEPTLKH 77 (133)
T ss_dssp CEEEEECSCH--HHHHHHHHHHT---TTS-EEEEESSHHHHHHHHHHSCCSEEEECSSCSS-SCHHHHHHHHHHSTTTTT
T ss_pred CEEEEEcCCH--HHHHHHHHHHh---CCc-EEEEECCHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHHhCCccCC
Confidence 5777777322 12233433333 222 46555555555555543 678877654432 456777777764 6
Q ss_pred CCEEE-cCCc--ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLS--NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~g--gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |... ...+.+..|..+++..|-++++|.++|..++..
T Consensus 78 ~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 78 IPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 78765 3222 123455677789999999999999999999876
No 101
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=46.51 E-value=30 Score=36.66 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 333 ~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
++..|..+| --.-. +.+...+.++..+....+. ++++-+..... +..++.+++++.+. +
T Consensus 24 kkirvgiIG-~G~ig---~~H~~a~~~~~~~~~~~~~-------~~lvav~d~~~----~~a~~~a~~~g~~~--~---- 82 (393)
T 4fb5_A 24 KPLGIGLIG-TGYMG---KCHALAWNAVKTVFGDVER-------PRLVHLAEANA----GLAEARAGEFGFEK--A---- 82 (393)
T ss_dssp CCCEEEEEC-CSHHH---HHHHHHHTTHHHHHCSSCC-------CEEEEEECC------TTHHHHHHHHTCSE--E----
T ss_pred CCccEEEEc-CCHHH---HHHHHHHHhhhhhhccCCC-------cEEEEEECCCH----HHHHHHHHHhCCCe--e----
Confidence 345677787 21112 3342222333333333444 77777764443 44667888887753 1
Q ss_pred CcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 413 AEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 413 ~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
..++.++++. .|+++..+... .-.-.++.|+.+|++|++
T Consensus 83 -y~d~~ell~~~~iDaV~IatP~~--~H~~~a~~al~aGkhVl~ 123 (393)
T 4fb5_A 83 -TADWRALIADPEVDVVSVTTPNQ--FHAEMAIAALEAGKHVWC 123 (393)
T ss_dssp -ESCHHHHHHCTTCCEEEECSCGG--GHHHHHHHHHHTTCEEEE
T ss_pred -cCCHHHHhcCCCCcEEEECCChH--HHHHHHHHHHhcCCeEEE
Confidence 2477788864 68888766433 234567899999999987
No 102
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=46.21 E-value=1.3e+02 Score=25.70 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEE-EccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH--cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC--FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~-flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA--~G~P 451 (774)
.+++|+.... .....++...++.|. .|. .....++....+.. .|++++-.......-|..+++.+. ..+|
T Consensus 10 ~~iLivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ 84 (140)
T 3cg0_A 10 PGVLIVEDGR--LAAATLRIQLESLGY---DVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLP 84 (140)
T ss_dssp CEEEEECCBH--HHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCC
T ss_pred ceEEEEECCH--HHHHHHHHHHHHCCC---eeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCC
Confidence 6888888432 233566666666554 344 24444555555543 688887543320024556666554 5788
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..|..+++..|-+.++|..+|..++..
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 85 IIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 875 33332 23445678889999999999999999988865
No 103
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=45.91 E-value=99 Score=31.15 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=55.6
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI~~ 78 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRG-T--------------QQLSRLVSEGRVDGVLLQ 78 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHH-H--------------HHHHHHHHSCSSSEEEEC
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHH-H--------------HHHHHHHHhCCCcEEEEe
Confidence 4567999999887766777888888999999999998775442211 0 112334456789999987
Q ss_pred CCchhH--HHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKV--VISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~--~l~~Ll~~~~~~ipvI~tiH 248 (774)
...... .+..+. . ++|+|+.-+
T Consensus 79 ~~~~~~~~~~~~l~---~-~iPvV~i~~ 102 (303)
T 3kke_A 79 RREDFDDDMLAAVL---E-GVPAVTINS 102 (303)
T ss_dssp CCTTCCHHHHHHHH---T-TSCEEEESC
T ss_pred cCCCCcHHHHHHHh---C-CCCEEEECC
Confidence 654322 233333 2 789886544
No 104
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=45.69 E-value=75 Score=32.37 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=55.0
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
+.+|.++++++...-....+..+.+.+.+.||++.++........ .. ..+. .+...++|.|++..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~~-------------~~i~-~~~~~~vdgiIi~~ 67 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPN-QL-------------SQIE-NMVTKGVKVLVIAS 67 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-HH-------------HHHH-HHHHHTCSEEEECC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHH-HH-------------HHHH-HHHHcCCCEEEEEc
Confidence 578999999987766777788888899999999988874332111 11 1112 22335799999876
Q ss_pred CchhH---HHHHHHhCCCCCCCEEEEEc
Q 004092 224 LEAKV---VISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 224 ~~~~~---~l~~Ll~~~~~~ipvI~tiH 248 (774)
..... .+..+. ..++|+|..-+
T Consensus 68 ~~~~~~~~~~~~~~---~~giPvV~~~~ 92 (330)
T 3uug_A 68 IDGTTLSDVLKQAG---EQGIKVIAYDR 92 (330)
T ss_dssp SSGGGGHHHHHHHH---HTTCEEEEESS
T ss_pred CCchhHHHHHHHHH---HCCCCEEEECC
Confidence 55321 222222 34689886544
No 105
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=45.50 E-value=1.3e+02 Score=25.88 Aligned_cols=110 Identities=11% Similarity=0.177 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH-------cCEEEEcCccCcCCccHHHHHHHHc-
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT-------ADVVIYGSFLEEQTFPEILVKALCF- 448 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a-------aDI~V~PS~~E~qGfp~~llEAMA~- 448 (774)
.+++|+.... .....++...+..|... |.......+....+.. .|++++=-.... .-|..+++.+..
T Consensus 3 ~~ILivdD~~--~~~~~l~~~L~~~g~~~--v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~-~~G~~~~~~lr~~ 77 (133)
T 2r25_B 3 VKILVVEDNH--VNQEVIKRMLNLEGIEN--IELACDGQEAFDKVKELTSKGENYNMIFMDVQMPK-VDGLLSTKMIRRD 77 (133)
T ss_dssp SCEEEECSCH--HHHHHHHHHHHHTTCCC--EEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSS-SCHHHHHHHHHHH
T ss_pred ceEEEEcCCH--HHHHHHHHHHHHcCCce--EEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCC-CChHHHHHHHHhh
Confidence 4556665221 23355666666555543 5555444455444443 588887544432 346677777642
Q ss_pred ---CCCEEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 449 ---RKPIIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 449 ---G~PVIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
..|||. |..... .+.+..|..|++..|-+.++|.++|.+++..
T Consensus 78 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 78 LGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 467765 443332 3445678889999999999999999887654
No 106
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=45.38 E-value=87 Score=31.21 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=56.8
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiIi~ 71 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVR-E--------------REAVGQFFERRVDGLILA 71 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEEC
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHHCCCCEEEEe
Confidence 4678999999877656667777888889999999998875442211 0 112233455789999987
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
...........+ ...++|+|+.-.
T Consensus 72 ~~~~~~~~~~~~--~~~~iPvV~~~~ 95 (291)
T 3egc_A 72 PSEGEHDYLRTE--LPKTFPIVAVNR 95 (291)
T ss_dssp CCSSCCHHHHHS--SCTTSCEEEESS
T ss_pred CCCCChHHHHHh--hccCCCEEEEec
Confidence 654311222222 345789886544
No 107
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=45.28 E-value=1e+02 Score=26.23 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEE-EccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc---CC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF---RK 450 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~-flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~---G~ 450 (774)
++++|+.... .....++...++.+. .+. .....++....+. ..|++++-..... .-|..+++.+.. ..
T Consensus 2 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~ 75 (134)
T 3f6c_A 2 LNAIIIDDHP--LAIAAIRNLLIKNDI---EILAELTEGGSAVQRVETLKPDIVIIDVDIPG-VNGIQVLETLRKRQYSG 75 (134)
T ss_dssp EEEEEECCCH--HHHHHHHHHHHHTTE---EEEEEESSSTTHHHHHHHHCCSEEEEETTCSS-SCHHHHHHHHHHTTCCS
T ss_pred eEEEEEcCCH--HHHHHHHHHHhhCCc---EEEEEcCCHHHHHHHHHhcCCCEEEEecCCCC-CChHHHHHHHHhcCCCC
Confidence 5677777322 233666777776653 333 4444445555543 4688887654432 456777776653 45
Q ss_pred CEEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 451 PIIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|||. |... ...+.+..|..+++..|-+.++|.++|..++..
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 76 IIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred eEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 6654 3322 234455678889999999999999999999876
No 108
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=45.16 E-value=1.2e+02 Score=26.09 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=67.5
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc---CC
Q 004092 376 PIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RK 450 (774)
Q Consensus 376 ~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~---G~ 450 (774)
..+++|+.... .....+....+..|. .|.......+....+.. .|++++| + .-|..+++.+.. .+
T Consensus 18 ~~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~dlvi~~---~--~~g~~~~~~l~~~~~~~ 87 (137)
T 2pln_A 18 SMRVLLIEKNS--VLGGEIEKGLNVKGF---MADVTESLEDGEYLMDIRNYDLVMVS---D--KNALSFVSRIKEKHSSI 87 (137)
T ss_dssp CSEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESCHHHHHHHHHHSCCSEEEEC---S--TTHHHHHHHHHHHSTTS
T ss_pred CCeEEEEeCCH--HHHHHHHHHHHHcCc---EEEEeCCHHHHHHHHHcCCCCEEEEc---C--ccHHHHHHHHHhcCCCc
Confidence 36888887332 233566677776554 45555555566665554 5888832 2 235666666653 67
Q ss_pred CEEE-cCCcc---cccccccCccEEEEcCC-CHHHHHHHHHHHHHc
Q 004092 451 PIIA-PDLSN---IRKYVDDRVNGYLFPKE-NIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa-td~gg---i~EiV~dg~~G~Lv~~~-d~e~La~aI~~Ll~d 491 (774)
|||. |.... ..+.+..|..+++..|- +.++|..+|..++..
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 8765 33332 23455678889999998 999999999888754
No 109
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=44.92 E-value=1.3e+02 Score=25.33 Aligned_cols=109 Identities=9% Similarity=0.053 Sum_probs=67.3
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+.... .....++......+. .|.......+....+.. .|++++-..... .-|..+++.+. ..+|
T Consensus 4 ~~ilivdd~~--~~~~~l~~~l~~~~~---~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ 77 (126)
T 1dbw_A 4 YTVHIVDDEE--PVRKSLAFMLTMNGF---AVKMHQSAEAFLAFAPDVRNGVLVTDLRMPD-MSGVELLRNLGDLKINIP 77 (126)
T ss_dssp CEEEEEESSH--HHHHHHHHHHHHTTC---EEEEESCHHHHHHHGGGCCSEEEEEECCSTT-SCHHHHHHHHHHTTCCCC
T ss_pred CEEEEEcCCH--HHHHHHHHHHHhCCc---EEEEeCCHHHHHHHHhcCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCC
Confidence 5777777322 133556666665543 35444444555555543 577776543331 34566677664 3578
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..|..+++..|-+.+++.++|..++..
T Consensus 78 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 78 SIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 765 43332 23445678889999999999999999988765
No 110
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=44.82 E-value=63 Score=32.23 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=50.5
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
|+.+|+++++.+...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI~~ 65 (290)
T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAK-E--------------SAHFDAIIAAGYDAIIFN 65 (290)
T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEEC
T ss_pred CceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHH-H--------------HHHHHHHHHcCCCEEEEe
Confidence 4678999999876555556667777888999999987764322110 0 011122234689998887
Q ss_pred CCchh---HHHHHHHhCCCCCCCEEEEE
Q 004092 223 SLEAK---VVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 223 s~~~~---~~l~~Ll~~~~~~ipvI~ti 247 (774)
..... ..+..+. ..++|+|..-
T Consensus 66 ~~~~~~~~~~~~~~~---~~~iPvV~~~ 90 (290)
T 2fn9_A 66 PTDADGSIANVKRAK---EAGIPVFCVD 90 (290)
T ss_dssp CSCTTTTHHHHHHHH---HTTCCEEEES
T ss_pred cCChHHHHHHHHHHH---HCCCeEEEEe
Confidence 54332 1222222 2468988653
No 111
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=44.81 E-value=99 Score=26.79 Aligned_cols=109 Identities=14% Similarity=0.188 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc--CCCE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF--RKPI 452 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~--G~PV 452 (774)
.+++|+.... .....+.......+. .|.......+....+.. .|++++-..... .-|..+++.+.. .+||
T Consensus 5 ~~Ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~i 78 (136)
T 2qzj_A 5 TKILIIDGDK--DNCQKLKGFLEEKGI---SIDLAYNCEEAIGKIFSNKYDLIFLEIILSD-GDGWTLCKKIRNVTTCPI 78 (136)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHTTTC---EEEEESSHHHHHHHHHHCCCSEEEEESEETT-EEHHHHHHHHHTTCCCCE
T ss_pred CeEEEEcCCH--HHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHccCCCCCE
Confidence 5777777322 223556666664433 35544444555555543 588876543331 346677777753 5777
Q ss_pred EE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 453 IA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 453 Ia-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|. |.... ..+.+..|..+++..|-++++|..+|..++..
T Consensus 79 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 79 VYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp EEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 65 33332 23455678889999999999999999888765
No 112
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=44.73 E-value=97 Score=29.08 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=31.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc
Q 004092 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR 186 (774)
Q Consensus 146 rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~ 186 (774)
+++.|...-..-|-.+...+||..|.+.|+.|.++......
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 45555555445577889999999999999999999876533
No 113
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=44.64 E-value=1.2e+02 Score=27.11 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=70.9
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH-----cC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC-----FR 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA-----~G 449 (774)
.+++||=. ....+..++...++.|... |.....-.+..+.+.. .|++++=-.... .-|..+++.+- ..
T Consensus 13 ~rILiVDD--~~~~r~~l~~~L~~~G~~~--v~~a~~g~~al~~~~~~~~DlillD~~MP~-mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 13 MKILIVDD--FSTMRRIVKNLLRDLGFNN--TQEADDGLTALPMLKKGDFDFVVTDWNMPG-MQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CCEEEECS--CHHHHHHHHHHHHHTTCCC--EEEESSHHHHHHHHHHHCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTT
T ss_pred CEEEEEeC--CHHHHHHHHHHHHHcCCcE--EEEECCHHHHHHHHHhCCCCEEEEcCCCCC-CCHHHHHHHHHhCCCCCC
Confidence 67777762 2223466777788778764 5444333344444443 588876554432 45778888874 45
Q ss_pred CCEEE-cCCcccc---cccccCccEEEEcCCCHHHHHHHHHHHHH
Q 004092 450 KPIIA-PDLSNIR---KYVDDRVNGYLFPKENIKALTHIILQVIT 490 (774)
Q Consensus 450 ~PVIa-td~ggi~---EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~ 490 (774)
+|||. |..+... +...-|.++|+..|-++++|.++|.++++
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 78875 4433332 34467889999999999999999988764
No 114
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=44.44 E-value=16 Score=35.82 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=41.5
Q ss_pred HHHHHHHcCEEEEcCccCcCCcc--HHHHHHHHcCCCEEEcCCcccc-----cccccC------ccEEEEcCCCHHHHHH
Q 004092 417 VDSVLNTADVVIYGSFLEEQTFP--EILVKALCFRKPIIAPDLSNIR-----KYVDDR------VNGYLFPKENIKALTH 483 (774)
Q Consensus 417 l~~~l~aaDI~V~PS~~E~qGfp--~~llEAMA~G~PVIatd~ggi~-----EiV~dg------~~G~Lv~~~d~e~La~ 483 (774)
-.-+...||++|... . |+| ..+.||+..++||++-+..+.- .++.+| ....+.-.+|++++.+
T Consensus 112 k~~m~~~sda~Ivlp---G-G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~ 187 (195)
T 1rcu_A 112 SFVLLRNADVVVSIG---G-EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQ 187 (195)
T ss_dssp HHHHHTTCSEEEEES---C-CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHH
T ss_pred HHHHHHhCCEEEEec---C-CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHH
Confidence 344667899988643 1 333 4567788999999998654332 222222 1223344468999888
Q ss_pred HHHHH
Q 004092 484 IILQV 488 (774)
Q Consensus 484 aI~~L 488 (774)
.|.++
T Consensus 188 ~l~~~ 192 (195)
T 1rcu_A 188 IIEQI 192 (195)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 87653
No 115
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=43.34 E-value=81 Score=31.63 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=27.8
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR 186 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~ 186 (774)
.+.++++|.++.. -.+..+--....+.+.|++|.|++...|+
T Consensus 2 ~~~~vL~v~aHPD--De~l~~Ggtia~~~~~G~~V~vv~lT~G~ 43 (242)
T 2ixd_A 2 SGLHILAFGAHAD--DVEIGMAGTIAKYTKQGYEVGICDLTEAD 43 (242)
T ss_dssp CCCSEEEEESSTT--HHHHHHHHHHHHHHHTTCCEEEEEEECCT
T ss_pred CCccEEEEEeCCC--hHHHhHHHHHHHHHHCCCeEEEEEEcCCC
Confidence 4578888888743 33333333444556789999999886654
No 116
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=43.29 E-value=47 Score=28.96 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=70.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHH-cCCCCccEEEccCcccHHHHHHH---cCEEEEcCccC-cCCccHHHHHHHHc---
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHN-LHYPLGVVKHMAAEGDVDSVLNT---ADVVIYGSFLE-EQTFPEILVKALCF--- 448 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~-lgL~~~~V~flG~~~dl~~~l~a---aDI~V~PS~~E-~qGfp~~llEAMA~--- 448 (774)
.+++|+.... .....++...++ .+. .|.......+....+.. .|++++-.... . .-|..+++.+..
T Consensus 5 ~~ilivdd~~--~~~~~l~~~L~~~~~~---~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~-~~g~~~~~~l~~~~~ 78 (140)
T 3lua_A 5 GTVLLIDYFE--YEREKTKIIFDNIGEY---DFIEVENLKKFYSIFKDLDSITLIIMDIAFPVE-KEGLEVLSAIRNNSR 78 (140)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHHCCC---EEEEECSHHHHHTTTTTCCCCSEEEECSCSSSH-HHHHHHHHHHHHSGG
T ss_pred CeEEEEeCCH--HHHHHHHHHHHhccCc---cEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCC-CcHHHHHHHHHhCcc
Confidence 5777777322 233566777775 554 35555444555555544 68888765433 2 346677776654
Q ss_pred --CCCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 449 --RKPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 449 --G~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.+|||. |.... ..+.+..|..+++..|-+.++|.++|..++..
T Consensus 79 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 79 TANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp GTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 678766 33322 23445678889999999999999999999876
No 117
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=42.84 E-value=1.6e+02 Score=25.27 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=64.3
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHH-----cC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALC-----FR 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA-----~G 449 (774)
.+++|+.... .....+....++. . .|.......+....+. ..|++++-..... .-|..+++.+. ..
T Consensus 4 ~~iLivdd~~--~~~~~l~~~l~~~---~-~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ 76 (140)
T 3n53_A 4 KKILIIDQQD--FSRIELKNFLDSE---Y-LVIESKNEKEALEQIDHHHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKN 76 (140)
T ss_dssp CEEEEECSCH--HHHHHHHHHHTTT---S-EEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCTT
T ss_pred CEEEEEeCCH--HHHHHHHHHHHhc---c-eEEEeCCHHHHHHHHhcCCCCEEEEeCCCCC-CcHHHHHHHHHcCcccCC
Confidence 4677777322 1234455555533 3 5665555555555554 3588887654332 34566666665 46
Q ss_pred CCEEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |... ...+.+..|..+++..|-+.++|..+|..++..
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 77 VPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp CCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 78765 3322 234455677889999999999999999998876
No 118
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=42.82 E-value=45 Score=29.78 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=66.7
Q ss_pred CCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHH-HcCCC
Q 004092 375 SPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKAL-CFRKP 451 (774)
Q Consensus 375 ~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAM-A~G~P 451 (774)
.+.+++||=.+.. .+..++...++.|..- +.....-++..+++.. .|++++=-.... .-|..+++.+ ..++|
T Consensus 7 r~~rILiVdD~~~--~~~~l~~~L~~~G~~v--~~~a~~g~eAl~~~~~~~~DlvllDi~mP~-~~G~el~~~lr~~~ip 81 (123)
T 2lpm_A 7 RRLRVLVVEDESM--IAMLIEDTLCELGHEV--AATASRMQEALDIARKGQFDIAIIDVNLDG-EPSYPVADILAERNVP 81 (123)
T ss_dssp CCCCEEEESSSTT--TSHHHHHHHHHHCCCC--CBCSCCHHHHHHHHHHCCSSEEEECSSSSS-CCSHHHHHHHHHTCCS
T ss_pred CCCEEEEEeCCHH--HHHHHHHHHHHCCCEE--EEEECCHHHHHHHHHhCCCCEEEEecCCCC-CCHHHHHHHHHcCCCC
Confidence 3478888872211 1267777888777653 2222233444455544 588886544332 4567777776 45789
Q ss_pred EEE-cCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 452 IIA-PDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 452 VIa-td~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
||. |..+.......-+..|++..|-++++|.++|.+++
T Consensus 82 vI~lTa~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 82 FIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp SCCBCTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEEEecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 865 44333222234456789999999999999887654
No 119
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=42.06 E-value=1.8e+02 Score=25.55 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=70.2
Q ss_pred CeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH---cCC
Q 004092 376 PIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC---FRK 450 (774)
Q Consensus 376 ~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA---~G~ 450 (774)
..+++|+.... .....+....++.|. .|.......+....+.. .|++++-..... .-|..+++.+. ..+
T Consensus 14 ~~~ILivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ 87 (153)
T 3hv2_A 14 RPEILLVDSQE--VILQRLQQLLSPLPY---TLHFARDATQALQLLASREVDLVISAAHLPQ-MDGPTLLARIHQQYPST 87 (153)
T ss_dssp CCEEEEECSCH--HHHHHHHHHHTTSSC---EEEEESSHHHHHHHHHHSCCSEEEEESCCSS-SCHHHHHHHHHHHCTTS
T ss_pred CceEEEECCCH--HHHHHHHHHhcccCc---EEEEECCHHHHHHHHHcCCCCEEEEeCCCCc-CcHHHHHHHHHhHCCCC
Confidence 36788887332 123556666664442 46655555566665554 588887654432 45677777664 357
Q ss_pred CEEE-cCCcc---cccccccC-ccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 451 PIIA-PDLSN---IRKYVDDR-VNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa-td~gg---i~EiV~dg-~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|||. |.... ..+.+..| ..+++..|-+.++|..+|..++..
T Consensus 88 ~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 88 TRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp EEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 7765 33332 23445566 689999999999999999998876
No 120
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=42.06 E-value=1e+02 Score=26.47 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc---CCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF---RKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~---G~P 451 (774)
.+++|+.... .....++...++.+. .|......++....+. ..|++++-..... .-|..+++.+.. .+|
T Consensus 8 ~~ilivdd~~--~~~~~l~~~L~~~~~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 81 (137)
T 3hdg_A 8 LKILIVEDDT--DAREWLSTIISNHFP---EVWSAGDGEEGERLFGLHAPDVIITDIRMPK-LGGLEMLDRIKAGGAKPY 81 (137)
T ss_dssp CCEEEECSCH--HHHHHHHHHHHTTCS---CEEEESSHHHHHHHHHHHCCSEEEECSSCSS-SCHHHHHHHHHHTTCCCE
T ss_pred cEEEEEeCCH--HHHHHHHHHHHhcCc---EEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCc
Confidence 6788887322 123556666664222 4666655556555554 3688887654432 456777776654 567
Q ss_pred EEEc-CCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIAP-DLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIat-d~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||.. .... ..+.+..|..+++..|-+.++|.++|.++++.
T Consensus 82 ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 82 VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 7763 3322 23445678889999999999999999998876
No 121
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=41.37 E-value=1.3e+02 Score=31.29 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=45.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
+.++-+..... +..++++++++... ...++.+++. .+|+++..+... .-.-.+.+|+..|++|++
T Consensus 30 ~~l~av~d~~~----~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~~gk~vl~ 96 (330)
T 3e9m_A 30 AEVRGIASRRL----ENAQKMAKELAIPV-------AYGSYEELCKDETIDIIYIPTYNQ--GHYSAAKLALSQGKPVLL 96 (330)
T ss_dssp EEEEEEBCSSS----HHHHHHHHHTTCCC-------CBSSHHHHHHCTTCSEEEECCCGG--GHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEEeCCH----HHHHHHHHHcCCCc-------eeCCHHHHhcCCCCCEEEEcCCCH--HHHHHHHHHHHCCCeEEE
Confidence 67665554433 56778888777643 1357888888 789988876444 234466789999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 97 E 97 (330)
T 3e9m_A 97 E 97 (330)
T ss_dssp C
T ss_pred e
Confidence 4
No 122
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=40.87 E-value=74 Score=31.62 Aligned_cols=91 Identities=11% Similarity=-0.023 Sum_probs=49.6
Q ss_pred CCCCeEEEEecCCC--CChHHHHHHHHHHHHHHcCCeEEEEEcC-CCcchhhhhhcCccEEEcccchhHHHHhhhcCccE
Q 004092 142 YRKPQLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLE-DGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDG 218 (774)
Q Consensus 142 ~rk~rialV~~~L~--~GG~e~~v~~Lak~L~~~G~eV~V~t~~-~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DI 218 (774)
.+..+|+++.+.+. ..-....+..+.+.+.+.||++.++... ....... ......+...++|.
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~vdg 68 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQ--------------NELIEEAIKRKPDV 68 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHH--------------HHHHHHHHHTCCSE
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHH--------------HHHHHHHHHhCCCE
Confidence 45678999998765 3344455666777888899998876543 1111100 01112233468999
Q ss_pred EEEcCCchhHHHHHHHhCCCCCCCEEEE
Q 004092 219 ILVNSLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 219 Ihvhs~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
|++...........+......++|+|..
T Consensus 69 ii~~~~~~~~~~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 69 ILLAAADYEKTYDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp EEECCSCTTTTHHHHTTTGGGTCEEEEE
T ss_pred EEEeCCChHHhHHHHHHHHHCCCcEEEE
Confidence 9887654321112221111346898764
No 123
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=40.15 E-value=1.2e+02 Score=29.60 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=55.8
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 1 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiIi~ 65 (272)
T 3o74_A 1 HTRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQPDS-E--------------RQLQQLFRARRCDALFVA 65 (272)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEEC
T ss_pred CceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHHcCCCEEEEe
Confidence 3567999999887666677778888899999999998875432211 0 111223445689999886
Q ss_pred CCc--hhHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLE--AKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~--~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
... ....+..+. ..++|+|+.-.
T Consensus 66 ~~~~~~~~~~~~~~---~~~iPvV~~~~ 90 (272)
T 3o74_A 66 SCLPPEDDSYRELQ---DKGLPVIAIDR 90 (272)
T ss_dssp CCCCSSCCHHHHHH---HTTCCEEEESS
T ss_pred cCccccHHHHHHHH---HcCCCEEEEcc
Confidence 543 122344333 24689886543
No 124
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=40.01 E-value=56 Score=33.91 Aligned_cols=82 Identities=5% Similarity=0.047 Sum_probs=56.5
Q ss_pred eEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEccC-------cccHHHHHHHcCEEEEcC--------ccCcCCcc
Q 004092 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA-------EGDVDSVLNTADVVIYGS--------FLEEQTFP 439 (774)
Q Consensus 377 v~LvIvG--G~~~e~Y~~~L~~la~~lgL~~~~V~flG~-------~~dl~~~l~aaDI~V~PS--------~~E~qGfp 439 (774)
.+++++. ....+.|.+.+++..+++|... |..+.- .+++.+.+..||++.++- .+...++-
T Consensus 57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~--v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~ 134 (291)
T 3en0_A 57 AIIGIIPSASREPLLIGERYQTIFSDMGVKE--LKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLM 134 (291)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHHHHHHCCSE--EEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCCe--eEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHH
Confidence 5777887 3334567777788888888854 555532 245678999999999874 12212455
Q ss_pred HHHHHHHHcC-CCEEEcCCccc
Q 004092 440 EILVKALCFR-KPIIAPDLSNI 460 (774)
Q Consensus 440 ~~llEAMA~G-~PVIatd~ggi 460 (774)
-.|-|+...| +|++.+..|.+
T Consensus 135 ~~L~~~~~~G~~~~~GtSAGA~ 156 (291)
T 3en0_A 135 DRIRQRVHNGEISLAGTSAGAA 156 (291)
T ss_dssp HHHHHHHHTTSSEEEEETHHHH
T ss_pred HHHHHHHHCCCeEEEEeCHHHH
Confidence 6788888999 89988876643
No 125
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=39.54 E-value=48 Score=35.00 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=44.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++-+..... +..++.+++++.+. + ..++.++++. .|+++..+... .-.-.+++|+.+|++|++
T Consensus 38 ~~l~av~d~~~----~~a~~~a~~~g~~~--~-----~~d~~~ll~~~~iDaV~I~tP~~--~H~~~~~~al~aGkhVl~ 104 (390)
T 4h3v_A 38 PDLNVLCGRDA----EAVRAAAGKLGWST--T-----ETDWRTLLERDDVQLVDVCTPGD--SHAEIAIAALEAGKHVLC 104 (390)
T ss_dssp EEEEEEECSSH----HHHHHHHHHHTCSE--E-----ESCHHHHTTCTTCSEEEECSCGG--GHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEEcCCH----HHHHHHHHHcCCCc--c-----cCCHHHHhcCCCCCEEEEeCChH--HHHHHHHHHHHcCCCcee
Confidence 56666665443 67788888888754 1 2467777764 68888766433 234577899999999987
No 126
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=39.46 E-value=1.8e+02 Score=24.78 Aligned_cols=109 Identities=8% Similarity=0.044 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH---cCEEEEcCccCcCCccHHHHHHHHc----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT---ADVVIYGSFLEEQTFPEILVKALCF----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a---aDI~V~PS~~E~qGfp~~llEAMA~----G 449 (774)
.+++|+.... .....++...++.|. .|.......+....+.. .|++++-..... .-|..+++.+.. .
T Consensus 8 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ 81 (136)
T 3hdv_A 8 PLVLVVDDNA--VNREALILYLKSRGI---DAVGADGAEEARLYLHYQKRIGLMITDLRMQP-ESGLDLIRTIRASERAA 81 (136)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---CEEEESSHHHHHHHHHHCTTEEEEEECSCCSS-SCHHHHHHHHHTSTTTT
T ss_pred CeEEEECCCH--HHHHHHHHHHHHcCc---eEEEeCCHHHHHHHHHhCCCCcEEEEeccCCC-CCHHHHHHHHHhcCCCC
Confidence 6788887432 234667777776665 35444444455444443 577777554432 457778887754 3
Q ss_pred CCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |.... ..+.+..|..+++..|-+.++|.++|.++...
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp CEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 67765 33332 23455678889999999999999999998876
No 127
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=39.00 E-value=1.9e+02 Score=24.90 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+.... .....+....+..|. .|.......+....+.. .|++++-..... .-|..+++.+.. .
T Consensus 5 ~~iLivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~-~~g~~~~~~lr~~~~~~~ 78 (136)
T 3t6k_A 5 HTLLIVDDDD--TVAEMLELVLRGAGY---EVRRAASGEEALQQIYKNLPDALICDVLLPG-IDGYTLCKRVRQHPLTKT 78 (136)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEEESCCSS-SCHHHHHHHHHHSGGGTT
T ss_pred CEEEEEeCCH--HHHHHHHHHHHHCCC---EEEEeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHcCCCcCC
Confidence 4666776321 233556666665554 35444444455455443 588887554432 356777777643 5
Q ss_pred CCEEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |..... .+.+..|..+++..|-++++|..+|..++..
T Consensus 79 ~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 79 LPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp CCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 78765 333322 2345678889999999999999999999876
No 128
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=38.97 E-value=1.8e+02 Score=24.74 Aligned_cols=109 Identities=9% Similarity=0.171 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccC-----cCCccHHHHHHHH--
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLE-----EQTFPEILVKALC-- 447 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E-----~qGfp~~llEAMA-- 447 (774)
.+++|+.... .....++...++.+. .|.......+....+.. .|++++-.... . .-+..+++.+.
T Consensus 4 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~-~~g~~~~~~l~~~ 77 (140)
T 2qr3_A 4 GTIIIVDDNK--GVLTAVQLLLKNHFS---KVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNG-NEGLFWLHEIKRQ 77 (140)
T ss_dssp CEEEEECSCH--HHHHHHHHHHTTTSS---EEEEECCHHHHHHHHHHSCEEEEEEETTTTC------CCHHHHHHHHHHH
T ss_pred ceEEEEeCCH--HHHHHHHHHHHhCCc---EEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCC-ccHHHHHHHHHhh
Confidence 5777777322 123455555554433 45555555566666654 57777644322 1 34666666654
Q ss_pred -cCCCEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 448 -FRKPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 448 -~G~PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
..+|||. |.... ..+.+..|..+++..|-+.++|.++|..++..
T Consensus 78 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 78 YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 3678765 33222 23445678889999999999999999999876
No 129
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=38.94 E-value=1.1e+02 Score=30.28 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=56.3
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
+.+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++..
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiIi~~ 79 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDN-E--------------RRGLENLLSQHIDGLIVEP 79 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHTCCSEEEECC
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHH-H--------------HHHHHHHHHCCCCEEEEec
Confidence 368999999987777777888888999999999998875432211 0 1112233457899999875
Q ss_pred Cch------hHHHHHHHhCCCCCCCEEEEEc
Q 004092 224 LEA------KVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 224 ~~~------~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
... ...+..+. ..++|+|+.-.
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~~iPvV~~~~ 107 (298)
T 3tb6_A 80 TKSALQTPNIGYYLNLE---KNGIPFAMINA 107 (298)
T ss_dssp SSTTSCCTTHHHHHHHH---HTTCCEEEESS
T ss_pred ccccccCCcHHHHHHHH---hcCCCEEEEec
Confidence 431 12233332 34689887544
No 130
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=38.62 E-value=1.8e+02 Score=24.51 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=66.2
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----CC
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----RK 450 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G~ 450 (774)
+++|+... ......+....+..|. .|.......+..+.+.. .|++++-..... .-|..+++.+.. .+
T Consensus 4 ~ILivdd~--~~~~~~l~~~l~~~g~---~v~~~~~~~~al~~l~~~~~dlvllD~~~p~-~~g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 4 KVLLVDDS--AVLRKIVSFNLKKEGY---EVIEAENGQIALEKLSEFTPDLIVLXIMMPV-MDGFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTTC---EEEEESSHHHHHHHHTTBCCSEEEECSCCSS-SCHHHHHHHHHTSTTTTTS
T ss_pred eEEEEeCC--HHHHHHHHHHHHHCCc---EEEEeCCHHHHHHHHHhcCCCEEEEeccCCC-CcHHHHHHHHHhcccccCC
Confidence 55566522 1233556666665554 35444444555555543 588877554432 457778887743 57
Q ss_pred CEEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHH
Q 004092 451 PIIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVIT 490 (774)
Q Consensus 451 PVIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~ 490 (774)
|||. |..... .+.+..|..+++..|-++++|..+|.++++
T Consensus 78 pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 8765 433322 234567888999999999999999988764
No 131
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=38.59 E-value=69 Score=32.20 Aligned_cols=89 Identities=8% Similarity=-0.073 Sum_probs=53.1
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCC-cchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~-~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
.+.+|+++.++....-....+..+.+.+.+.||++.++..... ...... .....+...++|.|++
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~--------------~~i~~l~~~~vdgiii 67 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQV--------------QFIESALATYPSGIAT 67 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHH--------------HHHHHHHHTCCSEEEE
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHH--------------HHHHHHHHcCCCEEEE
Confidence 4578999999886555666777788888999999988764321 111110 1122233467999988
Q ss_pred cCCchh---HHHHHHHhCCCCCCCEEEEEc
Q 004092 222 NSLEAK---VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 222 hs~~~~---~~l~~Ll~~~~~~ipvI~tiH 248 (774)
...... ..+..+. ..++|+|..-.
T Consensus 68 ~~~~~~~~~~~~~~~~---~~giPvV~~~~ 94 (297)
T 3rot_A 68 TIPSDTAFSKSLQRAN---KLNIPVIAVDT 94 (297)
T ss_dssp CCCCSSTTHHHHHHHH---HHTCCEEEESC
T ss_pred eCCCHHHHHHHHHHHH---HCCCCEEEEcC
Confidence 654332 1222222 24689886533
No 132
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=38.56 E-value=68 Score=34.49 Aligned_cols=100 Identities=18% Similarity=0.092 Sum_probs=60.6
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 333 ~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
++..|..+| --.-. +.+ ++++..+....++ ....++++-+..... +..++.+++++... +
T Consensus 25 ~klrvgiIG-~G~ig---~~h---~~~~~~~~~~~~~---~~~~~elvav~d~~~----~~a~~~a~~~~~~~--~---- 84 (412)
T 4gqa_A 25 ARLNIGLIG-SGFMG---QAH---ADAYRRAAMFYPD---LPKRPHLYALADQDQ----AMAERHAAKLGAEK--A---- 84 (412)
T ss_dssp CEEEEEEEC-CSHHH---HHH---HHHHHHHHHHCTT---SSSEEEEEEEECSSH----HHHHHHHHHHTCSE--E----
T ss_pred ccceEEEEc-CcHHH---HHH---HHHHHhccccccc---cCCCeEEEEEEcCCH----HHHHHHHHHcCCCe--E----
Confidence 346788888 21111 233 6666665433222 111266665655443 66788888887653 1
Q ss_pred CcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 413 AEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 413 ~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
..++.++++ ..|+++..+... .-.-..++|+.+|++|++=
T Consensus 85 -y~d~~~ll~~~~vD~V~I~tp~~--~H~~~~~~al~aGkhVl~E 126 (412)
T 4gqa_A 85 -YGDWRELVNDPQVDVVDITSPNH--LHYTMAMAAIAAGKHVYCE 126 (412)
T ss_dssp -ESSHHHHHHCTTCCEEEECSCGG--GHHHHHHHHHHTTCEEEEE
T ss_pred -ECCHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHHcCCCeEee
Confidence 246777886 468887766433 2345788999999999873
No 133
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=38.45 E-value=78 Score=31.48 Aligned_cols=90 Identities=12% Similarity=0.176 Sum_probs=55.7
Q ss_pred CCCCeEEEEec-CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEE
Q 004092 142 YRKPQLALVFP-DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (774)
Q Consensus 142 ~rk~rialV~~-~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIh 220 (774)
.+...|+++++ ++...-....+..+.+.+.+.||++.++........ . ......+...++|.|+
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI 73 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDC-L--------------HLEKGISKENSFDAAI 73 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTC-G--------------GGCGGGSTTTCCSEEE
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchh-H--------------HHHHHHHhccCCCEEE
Confidence 34578999998 666556667788888899999999988764322111 0 0112233456899999
Q ss_pred EcCCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 221 VNSLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 221 vhs~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
+...... . ..+......++|+|+.-.
T Consensus 74 i~~~~~~-~-~~~~~~~~~~iPvV~~~~ 99 (289)
T 3g85_A 74 IANISNY-D-LEYLNKASLTLPIILFNR 99 (289)
T ss_dssp ESSCCHH-H-HHHHHHCCCSSCEEEESC
T ss_pred EecCCcc-c-HHHHHhccCCCCEEEECC
Confidence 9876553 2 222222356799886543
No 134
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=38.08 E-value=43 Score=31.70 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHHHHcCEEEEcCc-c-CcCCccHHHHHHHHcCCCEEEc--CC---ccc--------cccccc-------------CccE
Q 004092 419 SVLNTADVVIYGSF-L-EEQTFPEILVKALCFRKPIIAP--DL---SNI--------RKYVDD-------------RVNG 470 (774)
Q Consensus 419 ~~l~aaDI~V~PS~-~-E~qGfp~~llEAMA~G~PVIat--d~---ggi--------~EiV~d-------------g~~G 470 (774)
..+..||++|.--. . ...|...=+--|.|.|+||++- |. |+. .|..++ -.+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 46889999886421 1 1114444455589999999873 32 211 111111 0278
Q ss_pred EEEcCCCHHHHHHHHHHHH
Q 004092 471 YLFPKENIKALTHIILQVI 489 (774)
Q Consensus 471 ~Lv~~~d~e~La~aI~~Ll 489 (774)
.++. +.+++.++|.+.+
T Consensus 145 ~~~~--~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVS--SEEDLLEEIKQRL 161 (162)
T ss_dssp EEES--SHHHHHHHHHHTC
T ss_pred eEEe--CHHHHHHHHHHHh
Confidence 8885 7888888887654
No 135
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=37.08 E-value=1.3e+02 Score=29.91 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=54.1
Q ss_pred CCCeEEEEecCCCC--ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEE
Q 004092 143 RKPQLALVFPDLLI--DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (774)
Q Consensus 143 rk~rialV~~~L~~--GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIh 220 (774)
+...|+++++.... .-....+..+.+.+.+.||++.++........ .......+...++|.|+
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---------------~~~~~~~l~~~~vdgiI 71 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDS---------------MVPIRYILETGSADGVI 71 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGT---------------THHHHHHHHHTCCSEEE
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhH---------------HHHHHHHHHcCCccEEE
Confidence 45779999998753 45566677778888899999988754432111 11223345567899988
Q ss_pred EcCCchh-HHHHHHHhCCCCCCCEEEEEc
Q 004092 221 VNSLEAK-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 221 vhs~~~~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
+...... ..+..+. ..++|+|+.-.
T Consensus 72 i~~~~~~~~~~~~l~---~~~iPvV~i~~ 97 (288)
T 3gv0_A 72 ISKIEPNDPRVRFMT---ERNMPFVTHGR 97 (288)
T ss_dssp EESCCTTCHHHHHHH---HTTCCEEEESC
T ss_pred EecCCCCcHHHHHHh---hCCCCEEEECC
Confidence 8654321 2333333 24689886433
No 136
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=36.99 E-value=88 Score=30.90 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
|+.|.++.+++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++..
T Consensus 1 ~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdgiIi~~ 65 (271)
T 2dri_A 1 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAK-E--------------LANVQDLTVRGTKILLINP 65 (271)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHH-H--------------HHHHHHHTTTTEEEEEECC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHH-H--------------HHHHHHHHHcCCCEEEEeC
Confidence 467889998876555566777788889999999988764332111 0 0111223346799988865
Q ss_pred Cchh---HHHHHHHhCCCCCCCEEEEE
Q 004092 224 LEAK---VVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 224 ~~~~---~~l~~Ll~~~~~~ipvI~ti 247 (774)
.... ..+..+. ..++|+|..-
T Consensus 66 ~~~~~~~~~~~~~~---~~~iPvV~i~ 89 (271)
T 2dri_A 66 TDSDAVGNAVKMAN---QANIPVITLD 89 (271)
T ss_dssp SSTTTTHHHHHHHH---HTTCCEEEES
T ss_pred CChHHHHHHHHHHH---HCCCcEEEec
Confidence 4321 1222222 2468988653
No 137
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=36.81 E-value=1.2e+02 Score=29.91 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~~dgiIi~ 71 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKK-A--------------QGYLATFVSHNCTGMIST 71 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHhCCCCEEEEe
Confidence 4567999999877666667777888889999999998765442211 0 112233445789999997
Q ss_pred CCchhHHHH-HHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKVVIS-NIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~~l~-~Ll~~~~~~ipvI~tiH 248 (774)
.... ..+. .+. ..++|+|+.-+
T Consensus 72 ~~~~-~~~~~~l~---~~~iPvV~~~~ 94 (277)
T 3e61_A 72 AFNE-NIIENTLT---DHHIPFVFIDR 94 (277)
T ss_dssp GGGH-HHHHHHHH---HC-CCEEEGGG
T ss_pred cCCh-HHHHHHHH---cCCCCEEEEec
Confidence 7433 2333 333 24689886433
No 138
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=36.38 E-value=82 Score=31.59 Aligned_cols=88 Identities=8% Similarity=0.038 Sum_probs=52.1
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
+.+|.++++++...-....+..+.+.+.+.||++.++... +..... ..+.. +...++|.|++..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~-------------~~i~~-l~~~~vdgiii~~ 65 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTL-------------NAIDS-LAASGAKGFVICT 65 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC--SHHHHH-------------HHHHH-HHHTTCCEEEEEC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC--CHHHHH-------------HHHHH-HHHcCCCEEEEeC
Confidence 5689999998876666667777888888999999877652 111111 11122 2335799998876
Q ss_pred CchhHHHHHHHhCCCCCCCEEEEE
Q 004092 224 LEAKVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 224 ~~~~~~l~~Ll~~~~~~ipvI~ti 247 (774)
.........+......++|+|..-
T Consensus 66 ~~~~~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 66 PDPKLGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCchhhHHHHHHHHHCCCcEEEeC
Confidence 543212111111113468988654
No 139
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=36.32 E-value=99 Score=32.28 Aligned_cols=95 Identities=22% Similarity=0.201 Sum_probs=57.9
Q ss_pred CCCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEc
Q 004092 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (774)
Q Consensus 332 ~~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~fl 411 (774)
.+...+..+|.-..-. +.+ +.++..+ .++ ++++-+..... +..++++++++... +
T Consensus 16 ~~~irvgiIG~G~~~g---~~~---~~~l~~~---~~~-------~~lvav~d~~~----~~~~~~a~~~~~~~--~--- 70 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAAR---ELH---LPALKNL---SHL-------FEITAVTSRTR----SHAEEFAKMVGNPA--V--- 70 (340)
T ss_dssp CCCEEEEEECCSHHHH---HTH---HHHHHTT---TTT-------EEEEEEECSSH----HHHHHHHHHHSSCE--E---
T ss_pred CCceeEEEEecCHHHH---HHH---HHHHHhC---CCc-------eEEEEEEcCCH----HHHHHHHHHhCCCc--c---
Confidence 4556788888210111 233 5555443 134 77766664433 56677888776532 1
Q ss_pred cCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 412 AAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 412 G~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
..++.+++. ..|+++..+... .-.-.+.+|+.+|++|++-
T Consensus 71 --~~~~~~ll~~~~vD~V~i~tp~~--~H~~~~~~al~aGkhVl~E 112 (340)
T 1zh8_A 71 --FDSYEELLESGLVDAVDLTLPVE--LNLPFIEKALRKGVHVICE 112 (340)
T ss_dssp --ESCHHHHHHSSCCSEEEECCCGG--GHHHHHHHHHHTTCEEEEE
T ss_pred --cCCHHHHhcCCCCCEEEEeCCch--HHHHHHHHHHHCCCcEEEe
Confidence 256778887 479988876443 2345667899999999873
No 140
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=36.27 E-value=1.1e+02 Score=33.72 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=48.8
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcc------hhhhhhcCccEEEcccchhH-------HHH
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA------HEVWRNIGVPVAILQTGREK-------ASF 210 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~------~~~~~~~gi~i~~l~~~~~l-------~~~ 210 (774)
+|+++++++. ...|=.+.+..||..|.+.|+.|.+++...... .......++++......... ...
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDY 177 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHH
Confidence 4677777765 555788889999999999999999998654221 11223445555543222111 112
Q ss_pred hhhcCccEEEEcCC
Q 004092 211 VNWLNYDGILVNSL 224 (774)
Q Consensus 211 i~~~~~DIIhvhs~ 224 (774)
....++|+|++.++
T Consensus 178 a~~~~~DvVIIDTa 191 (443)
T 3dm5_A 178 FKSKGVDIIIVDTA 191 (443)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEECC
Confidence 22345777777665
No 141
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=35.89 E-value=1.5e+02 Score=29.57 Aligned_cols=86 Identities=7% Similarity=0.084 Sum_probs=50.4
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCC-eEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGY-AIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~-eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
..+|+++++++...-....+..+.+.+.+.|| ++.++........ . ......+...++|.|++.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~vdgiii~ 66 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSK-Q--------------NDQIDVLLAKGVKALAIN 66 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEEC
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHH-H--------------HHHHHHHHHcCCCEEEEe
Confidence 45788999887654455666777788889998 8877654321110 0 011122334689999887
Q ss_pred CCchh---HHHHHHHhCCCCCCCEEEEE
Q 004092 223 SLEAK---VVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 223 s~~~~---~~l~~Ll~~~~~~ipvI~ti 247 (774)
..... ..+..+. ..++|+|..-
T Consensus 67 ~~~~~~~~~~~~~~~---~~~iPvV~~~ 91 (309)
T 2fvy_A 67 LVDPAAAGTVIEKAR---GQNVPVVFFN 91 (309)
T ss_dssp CSSGGGHHHHHHHHH---TTTCCEEEES
T ss_pred CCCcchhHHHHHHHH---HCCCcEEEec
Confidence 64432 1222222 3568988653
No 142
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=35.79 E-value=2.1e+02 Score=24.58 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=69.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH---cCEEEEcCccCcCCccHHHHHHHH--cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT---ADVVIYGSFLEEQTFPEILVKALC--FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a---aDI~V~PS~~E~qGfp~~llEAMA--~G~P 451 (774)
.+++|+.... .....+....++.|. .|.......+....+.. .|++++-.......-|..+++.+. ..+|
T Consensus 6 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3h5i_A 6 KKILIVEDSK--FQAKTIANILNKYGY---TVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELP 80 (140)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCC
T ss_pred cEEEEEeCCH--HHHHHHHHHHHHcCC---EEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCC
Confidence 5777777322 234666777776654 35555444555555543 588887654321134666666654 4678
Q ss_pred EEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |... ...+.+..|..+++..|-++++|..+|..++..
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 81 VVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 765 3222 233556678889999999999999999988876
No 143
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=35.78 E-value=1.6e+02 Score=29.11 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=51.5
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|.++.+++...-....+..+.+.+.+.||++.++...... ... ......+...++|.|++.
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~--------------~~~~~~l~~~~vdgii~~ 70 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNL-EKQ--------------RAYLSMMAQKRVDGLLVM 70 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCH-HHH--------------HHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCCh-HHH--------------HHHHHHHHhCCCCEEEEE
Confidence 45679999988765455556677778888999999886543211 100 011222334689988876
Q ss_pred CCch-hHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEA-KVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~-~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
.... ......+. . ..++|+|..-.
T Consensus 71 ~~~~~~~~~~~l~-~-~~~iPvV~~~~ 95 (289)
T 1dbq_A 71 CSEYPEPLLAMLE-E-YRHIPMVVMDW 95 (289)
T ss_dssp CSCCCHHHHHHHH-H-TTTSCEEEEEC
T ss_pred eccCCHHHHHHHH-h-ccCCCEEEEcc
Confidence 5432 12333332 2 25689887654
No 144
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=35.40 E-value=1.7e+02 Score=24.71 Aligned_cols=109 Identities=13% Similarity=0.203 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc---CCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~---G~P 451 (774)
.+++|+.... .....+....++.|. .|.......+....+.. .|++++-..... .-|..+++.+.. .+|
T Consensus 8 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 81 (130)
T 3eod_A 8 KQILIVEDEQ--VFRSLLDSWFSSLGA---TTVLAADGVDALELLGGFTPDLMICDIAMPR-MNGLKLLEHIRNRGDQTP 81 (130)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCC
T ss_pred CeEEEEeCCH--HHHHHHHHHHHhCCc---eEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCC
Confidence 6788887322 234667777776654 35544444555555543 588887654332 456777776653 467
Q ss_pred EEE-cCCccc---ccccccCccEEEEcCC-CHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSNI---RKYVDDRVNGYLFPKE-NIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~ggi---~EiV~dg~~G~Lv~~~-d~e~La~aI~~Ll~d 491 (774)
||. |..... .+.+..|..+++..|- +.+.+.++|..++..
T Consensus 82 ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 82 VLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 765 333322 3455678889999997 899999999988865
No 145
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=35.26 E-value=1.7e+02 Score=25.14 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=59.3
Q ss_pred eEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHH--cCCCE
Q 004092 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC--FRKPI 452 (774)
Q Consensus 377 v~LvIvG--G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA--~G~PV 452 (774)
.++++++ |-...-....+++.+++.|++- .|...+. .++...+..+|+++...... +-..=++..+ .++||
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~-~i~~~~~-~~~~~~~~~~D~Ii~t~~l~---~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINA-TIEAIAE-TRLSEVVDRFDVVLLAPQSR---FNKKRLEEITKPKGIPI 79 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSE-EEEEECS-TTHHHHTTTCSEEEECSCCS---SHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCe-EEEEecH-HHHHhhcCCCCEEEECCccH---HHHHHHHHHhcccCCCE
Confidence 5555555 6555556678888898888864 4555544 46777788999998876544 1233333332 58999
Q ss_pred EEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 453 IAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 453 Iatd~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+.-+.-.. | ..|.+.+.+.+.++++.
T Consensus 80 ~~I~~~~y---------~----~~d~~~vl~~i~~~l~~ 105 (109)
T 2l2q_A 80 EIINTIDY---------G----TMNGEKVLQLAINAFNN 105 (109)
T ss_dssp EECCHHHH---------H----HTCHHHHHHHHHHHHHH
T ss_pred EEEChHHh---------c----cCCHHHHHHHHHHHHhc
Confidence 77532111 1 12566776666666653
No 146
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=35.21 E-value=48 Score=31.02 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=42.6
Q ss_pred HHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEE-cC--Cc-ccccccc---cCccEEEEcCCCHHHHHHHHHHHHH
Q 004092 418 DSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA-PD--LS-NIRKYVD---DRVNGYLFPKENIKALTHIILQVIT 490 (774)
Q Consensus 418 ~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa-td--~g-gi~EiV~---dg~~G~Lv~~~d~e~La~aI~~Ll~ 490 (774)
...+..||++|.--.....|.+.-+--|.+.|+||++ +. .+ .+.-++. ++..=.+.+..+ +++-+.|.+.++
T Consensus 63 ~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~ 141 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFE 141 (152)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC
T ss_pred HHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 3578999999874322211455556669999999998 22 21 2222332 222233444555 778887877776
Q ss_pred c
Q 004092 491 N 491 (774)
Q Consensus 491 d 491 (774)
+
T Consensus 142 ~ 142 (152)
T 4fyk_A 142 A 142 (152)
T ss_dssp -
T ss_pred h
Confidence 5
No 147
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.46 E-value=2.2e+02 Score=28.08 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++........ .. .....+...++|.|++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~~--------------~~~~~l~~~~vdgiI~~ 71 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLAR-SR--------------SCLTLLSGKMVDGVITM 71 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-HH--------------HHTHHHHTTCCSEEEEC
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH-HH--------------HHHHHHHhCCCCEEEEe
Confidence 4567999999865444455666777888899999988764321110 00 11122335689999887
Q ss_pred CCch-hHHHHHHHhCCCCCCCEEEEE
Q 004092 223 SLEA-KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 223 s~~~-~~~l~~Ll~~~~~~ipvI~ti 247 (774)
.... ...+.. + . .++|+|..-
T Consensus 72 ~~~~~~~~~~~-l--~-~~iPvV~~~ 93 (285)
T 3c3k_A 72 DALSELPELQN-I--I-GAFPWVQCA 93 (285)
T ss_dssp CCGGGHHHHHH-H--H-TTSSEEEES
T ss_pred CCCCChHHHHH-H--h-cCCCEEEEc
Confidence 5432 122322 2 2 568988653
No 148
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=33.21 E-value=3.1e+02 Score=26.52 Aligned_cols=109 Identities=8% Similarity=0.075 Sum_probs=69.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc---CCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF---RKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~---G~P 451 (774)
.+++|+-... .....+....+..+. .|.......+....+. ..|++++-..... .-|..+++.+.. .+|
T Consensus 24 ~~ILivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ 97 (250)
T 3r0j_A 24 ARVLVVDDEA--NIVELLSVSLKFQGF---EVYTATNGAQALDRARETRPDAVILDVXMPG-MDGFGVLRRLRADGIDAP 97 (250)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHHHCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCC
T ss_pred ceEEEEECCH--HHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCC
Confidence 6888887322 234566666665554 3555444455555554 3688887554332 456777777653 567
Q ss_pred EEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |..... .+.+..|..+++..|-++++|..+|..++..
T Consensus 98 ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 98 ALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp EEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 765 333322 3445678889999999999999999887764
No 149
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=33.03 E-value=2.3e+02 Score=24.67 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEE-EccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc---CC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RK 450 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~-flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~---G~ 450 (774)
.+++|+.... .....++...++ ...-.+. ......+....+.. .|++++-..... .-|..+++.+.. .+
T Consensus 6 ~~ILivdd~~--~~~~~l~~~L~~--~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~ 80 (153)
T 3cz5_A 6 ARIMLVDDHP--IVREGYRRLIER--RPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPG-PGGIEATRHIRQWDGAA 80 (153)
T ss_dssp EEEEEECSCH--HHHHHHHHHHTT--STTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSS-SCHHHHHHHHHHHCTTC
T ss_pred cEEEEECCcH--HHHHHHHHHHhh--CCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHHhCCCC
Confidence 6778887432 122444444442 1221233 33344555555553 588887554332 346667766643 57
Q ss_pred CEEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 451 PIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|||. |.... ..+.+..|..|++..|-+.++|..+|..++..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 81 RILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred eEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 7765 33332 23445678889999999999999999998875
No 150
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=32.69 E-value=1.5e+02 Score=27.47 Aligned_cols=106 Identities=10% Similarity=0.136 Sum_probs=60.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHH---cCCCEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC---FRKPII 453 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA---~G~PVI 453 (774)
.+++|+.... .....+.......|..- +......+.+ -...|++++-.... +....+.+.+. ..+|||
T Consensus 13 ~~iLivdd~~--~~~~~l~~~L~~~g~~v--~~~~~~~~al---~~~~dlvl~D~~mp--~~~g~l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 13 LQVLVLNPPG--EVSDALVLQLIRIGCSV--RQCWPPPEAF---DVPVDVVFTSIFQN--RHHDEIAALLAAGTPRTTLV 83 (196)
T ss_dssp CEEEEESCTT--HHHHHHHHHHHHHTCEE--EEECSCCSSC---SSCCSEEEEECCSS--THHHHHHHHHHHSCTTCEEE
T ss_pred CeEEEEcCCh--hHHHHHHHHHHHcCCeE--EEecCchhhC---CCCCCEEEEeCCCC--ccchHHHHHHhccCCCCCEE
Confidence 5677777322 12345555555545432 2222111111 12468877655443 33223666655 457776
Q ss_pred E-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 454 A-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 454 a-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
. |..... .+.+..|..+++..|-++++|..+|..++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHH
Confidence 5 443322 3445668889999999999999999988876
No 151
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=32.21 E-value=1.7e+02 Score=31.12 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=44.1
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++-+..... +..++.+++++.+. ..++.++++. .|+++..+... .-.-.+.+|+.+|++|++
T Consensus 28 ~~l~av~d~~~----~~~~~~a~~~g~~~--------~~~~~ell~~~~vD~V~i~tp~~--~H~~~~~~al~aGk~Vl~ 93 (387)
T 3moi_A 28 AQIVAACDPNE----DVRERFGKEYGIPV--------FATLAEMMQHVQMDAVYIASPHQ--FHCEHVVQASEQGLHIIV 93 (387)
T ss_dssp EEEEEEECSCH----HHHHHHHHHHTCCE--------ESSHHHHHHHSCCSEEEECSCGG--GHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEEeCCH----HHHHHHHHHcCCCe--------ECCHHHHHcCCCCCEEEEcCCcH--HHHHHHHHHHHCCCceee
Confidence 77766654433 55667777765531 2477788876 89999877544 234467799999999986
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 94 E 94 (387)
T 3moi_A 94 E 94 (387)
T ss_dssp C
T ss_pred e
Confidence 4
No 152
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=31.76 E-value=2e+02 Score=26.92 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=41.5
Q ss_pred EEEEEeC----CCC-CchHHHHHHHHHHcCCCCccEEEccCc-----ccH----HHHHHHcCEEEEcCc-----cCcCCc
Q 004092 378 KVMILSG----DST-SNYSVVIEAIAHNLHYPLGVVKHMAAE-----GDV----DSVLNTADVVIYGSF-----LEEQTF 438 (774)
Q Consensus 378 ~LvIvGG----~~~-e~Y~~~L~~la~~lgL~~~~V~flG~~-----~dl----~~~l~aaDI~V~PS~-----~E~qGf 438 (774)
+.+++|+ +.. ..+.+.+.+..++.|+. |.+.... ..+ ...+..||++|.--. ....|.
T Consensus 11 ~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~---v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GT 87 (161)
T 2f62_A 11 KIYIAGPAVFNPDMGASYYNKVRELLKKENVM---PLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGT 87 (161)
T ss_dssp EEEEESGGGGSTTTTHHHHHHHHHHHHTTTCE---EECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHCCCE---EECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcH
Confidence 6677773 233 34555666666655542 3332110 112 468999999886521 111133
Q ss_pred cHHHHHHHHcCCCEEEc
Q 004092 439 PEILVKALCFRKPIIAP 455 (774)
Q Consensus 439 p~~llEAMA~G~PVIat 455 (774)
..=+--|.|.|+|||+-
T Consensus 88 afEiGyA~AlgKPVi~l 104 (161)
T 2f62_A 88 AFEVGCAAALNKMVLTF 104 (161)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 33344588999999883
No 153
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=31.74 E-value=71 Score=27.69 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=42.5
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHH
Q 004092 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (774)
Q Consensus 379 LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA 447 (774)
++++| |-...-.-+.+++.+++.|++- .|.-.+. .++...+..+|++++..... +...=++..+
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~-~i~a~~~-~~~~~~~~~~Dvil~~pqv~---~~~~~~~~~~ 71 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPV-IIEAFPE-TLAGEKGQNADVVLLGPQIA---YMLPEIQRLL 71 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSE-EEEEECS-SSTTHHHHHCSEEEECTTSG---GGHHHHHHHS
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCe-EEEEecH-HHHHhhccCCCEEEEccchh---hhHHHHHHHh
Confidence 34444 7666555667888999999975 5555543 46667788999999877543 3444455544
No 154
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=31.65 E-value=28 Score=33.44 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=42.8
Q ss_pred HHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEcCCcccc-cccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 420 VLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 420 ~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIatd~ggi~-EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+...||.+|.-.-.- |.=..+.||+..++||++-+..+.. .++.+.....+...+|++++.+.|.+.+..
T Consensus 104 m~~~sda~IvlpGg~--GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 104 NALSSNVLVAVGMGP--GTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CGGGCSEEEEESCCH--HHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEEecCCc--cHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 455788877542111 2224566788899999998765422 233222222334456899999999887764
No 155
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=31.40 E-value=2.1e+02 Score=28.30 Aligned_cols=87 Identities=9% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCCeEEEEecC-C---CCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccE
Q 004092 143 RKPQLALVFPD-L---LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDG 218 (774)
Q Consensus 143 rk~rialV~~~-L---~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DI 218 (774)
+..+|++++++ + ...-....+..+.+.+.+.||++.++........ .......+...++|.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---------------~~~~~~~l~~~~vdg 67 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQ---------------IDIYRDLIRSGNVDG 67 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTC---------------CHHHHHHHHTTCCSE
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHH---------------HHHHHHHHHcCCCCE
Confidence 45678899888 6 5455566777788888999999877543221100 111223344568999
Q ss_pred EEEcCCch-hHHHHHHHhCCCCCCCEEEEE
Q 004092 219 ILVNSLEA-KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 219 Ihvhs~~~-~~~l~~Ll~~~~~~ipvI~ti 247 (774)
|++..... ...+..+. ..++|+|..-
T Consensus 68 iIi~~~~~~~~~~~~l~---~~~iPvV~~~ 94 (287)
T 3bbl_A 68 FVLSSINYNDPRVQFLL---KQKFPFVAFG 94 (287)
T ss_dssp EEECSCCTTCHHHHHHH---HTTCCEEEES
T ss_pred EEEeecCCCcHHHHHHH---hcCCCEEEEC
Confidence 98875432 12333332 2468988653
No 156
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=31.35 E-value=2.3e+02 Score=28.09 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=52.4
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
.+...|.++++++...-....+..+.+.+.+.||++.++...... ... ......+...++|.|++
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~--------------~~~~~~l~~~~vdgiIi 78 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNM-EKE--------------LHLLNTMLGKQVDGIVF 78 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCH-HHH--------------HHHHHHHHHTTCSEEEE
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCH-HHH--------------HHHHHHHHhCCCCEEEE
Confidence 345789999998765555666777788889999999887543211 100 01122334568999888
Q ss_pred cCCch-hHHHHHHHhCCCCCCCEEEEE
Q 004092 222 NSLEA-KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 222 hs~~~-~~~l~~Ll~~~~~~ipvI~ti 247 (774)
..... ...+..+. ..++|+|..-
T Consensus 79 ~~~~~~~~~~~~l~---~~~iPvV~~~ 102 (289)
T 2fep_A 79 MGGNITDEHVAEFK---RSPVPIVLAA 102 (289)
T ss_dssp CCSCCCHHHHHHHH---HSSSCEEEES
T ss_pred ecCCCCHHHHHHHH---hcCCCEEEEc
Confidence 76432 22333332 2468988653
No 157
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=31.19 E-value=3.2e+02 Score=25.29 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEE-EccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc--CCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF--RKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~-flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~--G~P 451 (774)
.+++|+.... .....+.......|. .|. ......+....+. ..|++++-..... .-|..+++.+.. ..|
T Consensus 14 ~~iLivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~-~~g~~~~~~l~~~~~~p 87 (205)
T 1s8n_A 14 RRVLIAEDEA--LIRMDLAEMLREEGY---EIVGEAGDGQEAVELAELHKPDLVIMDVKMPR-RDGIDAASEIASKRIAP 87 (205)
T ss_dssp CEEEEECSSH--HHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHCCSEEEEESSCSS-SCHHHHHHHHHHTTCSC
T ss_pred ccEEEEECCH--HHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCC-CChHHHHHHHHhcCCCC
Confidence 4677776322 123555666665444 233 3333344444444 3688877544332 346677776653 346
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..|..+++..|-+++.|..+|..++..
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 655 33322 23455678889999999999999999998876
No 158
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=31.15 E-value=2.7e+02 Score=28.34 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|.++++++...-....+..+.+.+.+.||++.++...... ... ......+...++|.|++.
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~--------------~~~~~~l~~~~vdgiI~~ 121 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNL-EKQ--------------RAYLSMMAQKRVDGLLVM 121 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCH-HHH--------------HHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeCCCCH-HHH--------------HHHHHHHHcCCCCEEEEe
Confidence 45679999998754444556677778888999999876543211 100 011223335689999986
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
...........+.. ..++|+|..-.
T Consensus 122 ~~~~~~~~~~~l~~-~~~iPvV~~~~ 146 (340)
T 1qpz_A 122 CSEYPEPLLAMLEE-YRHIPMVVMDW 146 (340)
T ss_dssp CSCCCHHHHHHHHT-TTTSCEEEEEE
T ss_pred CCCCChHHHHHHHh-hCCCCEEEEec
Confidence 54421122222322 35789887544
No 159
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=31.00 E-value=1.2e+02 Score=31.56 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=45.5
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++-+..... +..++++++++.+. + ..++.+++. ..|+++.++... .-.-.+.+|+.+|++|++
T Consensus 29 ~~l~av~d~~~----~~a~~~a~~~~~~~--~-----~~~~~~ll~~~~vD~V~i~tp~~--~H~~~~~~al~~GkhVl~ 95 (334)
T 3ohs_X 29 HQVVAVAARDL----SRAKEFAQKHDIPK--A-----YGSYEELAKDPNVEVAYVGTQHP--QHKAAVMLCLAAGKAVLC 95 (334)
T ss_dssp EEEEEEECSSH----HHHHHHHHHHTCSC--E-----ESSHHHHHHCTTCCEEEECCCGG--GHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEEcCCH----HHHHHHHHHcCCCc--c-----cCCHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHhcCCEEEE
Confidence 56665554433 56778888887754 2 257778887 589998877443 234467789999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 96 E 96 (334)
T 3ohs_X 96 E 96 (334)
T ss_dssp E
T ss_pred E
Confidence 4
No 160
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=31.00 E-value=1.6e+02 Score=29.36 Aligned_cols=89 Identities=8% Similarity=-0.112 Sum_probs=48.8
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
+.+|.++.+.....-.......+...+.+.||++.++........... ..+. .+...++|.|++..
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~-~l~~~~vdgiii~~ 69 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQV-------------KIIE-DLIARKVDAITIVP 69 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHH-------------HHHH-HHHHTTCSEEEECC
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHH-------------HHHH-HHHHcCCCEEEEec
Confidence 467888888765444455566677788889999876543222111110 0112 22246799998876
Q ss_pred CchhHHHHHHHhCCCCCCCEEEE
Q 004092 224 LEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 224 ~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
.........+......++|+|..
T Consensus 70 ~~~~~~~~~~~~~~~~~ipvV~~ 92 (303)
T 3d02_A 70 NDANVLEPVFKKARDAGIVVLTN 92 (303)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CChHHHHHHHHHHHHCCCeEEEE
Confidence 54422211111111346898864
No 161
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=30.82 E-value=2.4e+02 Score=23.61 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+.... .....+....+..|... |......++....+.. .|++++-..... .-|..+++.+.. .
T Consensus 7 ~~ilivdd~~--~~~~~l~~~L~~~g~~~--v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 7 IKVLIVDDQV--TSRLLLGDALQQLGFKQ--ITAAGDGEQGMKIMAQNPHHLVISDFNMPK-MDGLGLLQAVRANPATKK 81 (129)
T ss_dssp CCEEEECSSH--HHHHHHHHHHHTTTCSC--EECCSSHHHHHHHHHTSCCSEEEECSSSCS-SCHHHHHHHHTTCTTSTT
T ss_pred CeEEEEcCCH--HHHHHHHHHHHHCCCcE--EEecCCHHHHHHHHHcCCCCEEEEeCCCCC-CCHHHHHHHHhcCccccC
Confidence 5677777321 22355666666555532 5555544555555553 588876544332 346777777743 5
Q ss_pred CCEEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.|+|. |..+.. .+.+..|..+++..|-+.+++..+|..++..
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 67765 333322 2345567789999999999999999887753
No 162
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=30.73 E-value=80 Score=32.36 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=44.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
+.++-+..... +..++++++++... ..++.+++..+|+++..+... .-.-.+.+|+..|++|++-
T Consensus 32 ~~l~av~d~~~----~~~~~~a~~~~~~~--------~~~~~~ll~~~D~V~i~tp~~--~h~~~~~~al~~gk~vl~E 96 (308)
T 3uuw_A 32 FEFVGAFTPNK----VKREKICSDYRIMP--------FDSIESLAKKCDCIFLHSSTE--THYEIIKILLNLGVHVYVD 96 (308)
T ss_dssp SEEEEEECSCH----HHHHHHHHHHTCCB--------CSCHHHHHTTCSEEEECCCGG--GHHHHHHHHHHTTCEEEEC
T ss_pred eEEEEEECCCH----HHHHHHHHHcCCCC--------cCCHHHHHhcCCEEEEeCCcH--hHHHHHHHHHHCCCcEEEc
Confidence 67765554333 56677777776542 246667777999999877544 2345677899999999874
No 163
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=30.73 E-value=1.9e+02 Score=30.77 Aligned_cols=67 Identities=13% Similarity=0.002 Sum_probs=45.1
Q ss_pred eEEEE-EeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH-------cCEEEEcCccCcCCccHHHHHHHHc
Q 004092 377 IKVMI-LSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT-------ADVVIYGSFLEEQTFPEILVKALCF 448 (774)
Q Consensus 377 v~LvI-vGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a-------aDI~V~PS~~E~qGfp~~llEAMA~ 448 (774)
+.++. +..... +..++.+++++++. +. ...++.+++.. .|+++..+... .-.-.+.+|+.+
T Consensus 40 ~~lva~v~d~~~----~~a~~~a~~~g~~~--~~---~~~~~~~ll~~~~~~~~~vD~V~i~tp~~--~H~~~~~~al~a 108 (398)
T 3dty_A 40 FVLVAGAFDIDP----IRGSAFGEQLGVDS--ER---CYADYLSMFEQEARRADGIQAVSIATPNG--THYSITKAALEA 108 (398)
T ss_dssp EEEEEEECCSSH----HHHHHHHHHTTCCG--GG---BCSSHHHHHHHHTTCTTCCSEEEEESCGG--GHHHHHHHHHHT
T ss_pred eEEEEEEeCCCH----HHHHHHHHHhCCCc--ce---eeCCHHHHHhcccccCCCCCEEEECCCcH--HHHHHHHHHHHC
Confidence 66664 333333 66778888888863 11 12577788876 89988776443 234567899999
Q ss_pred CCCEEE
Q 004092 449 RKPIIA 454 (774)
Q Consensus 449 G~PVIa 454 (774)
|++|++
T Consensus 109 GkhVl~ 114 (398)
T 3dty_A 109 GLHVVC 114 (398)
T ss_dssp TCEEEE
T ss_pred CCeEEE
Confidence 999998
No 164
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.67 E-value=1.6e+02 Score=25.23 Aligned_cols=108 Identities=13% Similarity=0.145 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+.... .....++...++.|. .|.......+....+.. .|++++-. ... .-+..+++.+. ..+|
T Consensus 5 ~~iLivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvi~d~-~~~-~~g~~~~~~l~~~~~~~p 77 (142)
T 2qxy_A 5 PTVMVVDESR--ITFLAVKNALEKDGF---NVIWAKNEQEAFTFLRREKIDLVFVDV-FEG-EESLNLIRRIREEFPDTK 77 (142)
T ss_dssp CEEEEECSCH--HHHHHHHHHHGGGTC---EEEEESSHHHHHHHHTTSCCSEEEEEC-TTT-HHHHHHHHHHHHHCTTCE
T ss_pred CeEEEEeCCH--HHHHHHHHHHHhCCC---EEEEECCHHHHHHHHhccCCCEEEEeC-CCC-CcHHHHHHHHHHHCCCCC
Confidence 5777777322 223556666665554 35555544555555553 68887765 431 24555666554 2577
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..|..+++..|-+.++|.++|..++..
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 765 33332 23345667789999999999999999999987
No 165
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=30.61 E-value=2.4e+02 Score=23.98 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=63.7
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc---CCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF---RKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~---G~P 451 (774)
.+++|+.... .....++...+..+--. .|.......+....+. ..|++++-..... .-|..+++.+.. .+|
T Consensus 4 ~~Ilivdd~~--~~~~~l~~~l~~~~~~~-~v~~~~~~~~al~~~~~~~~dlvilD~~lp~-~~g~~~~~~l~~~~~~~~ 79 (133)
T 3b2n_A 4 TSLIIAEDQN--MLRQAMVQLIKLHGDFE-ILADTDNGLDAMKLIEEYNPNVVILDIEMPG-MTGLEVLAEIRKKHLNIK 79 (133)
T ss_dssp EEEEEECSCH--HHHHHHHHHHHHHSSEE-EEEEESCHHHHHHHHHHHCCSEEEECSSCSS-SCHHHHHHHHHHTTCSCE
T ss_pred eEEEEECCCH--HHHHHHHHHHhhCCCcE-EEEEcCCHHHHHHHHhhcCCCEEEEecCCCC-CCHHHHHHHHHHHCCCCc
Confidence 4566665321 12344555555433111 2333333344444444 3688887554432 346667777653 567
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..|..|++..|-++++|.++|..++..
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 80 VIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred EEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 765 33332 23455678889999999999999999988765
No 166
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=30.22 E-value=2.3e+02 Score=23.31 Aligned_cols=108 Identities=10% Similarity=0.133 Sum_probs=62.0
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+... ......++...+..|... +.......+....+. ..|++++-..... .-|..+++.+. ...|
T Consensus 3 ~~ilivdd~--~~~~~~l~~~l~~~g~~v--v~~~~~~~~a~~~~~~~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ 77 (120)
T 1tmy_A 3 KRVLIVDDA--AFMRMMLKDIITKAGYEV--AGEATNGREAVEKYKELKPDIVTMDITMPE-MNGIDAIKEIMKIDPNAK 77 (120)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTCEE--EEEESSHHHHHHHHHHHCCSEEEEECSCGG-GCHHHHHHHHHHHCTTCC
T ss_pred ceEEEEcCc--HHHHHHHHHHHhhcCcEE--EEEECCHHHHHHHHHhcCCCEEEEeCCCCC-CcHHHHHHHHHhhCCCCe
Confidence 356666632 123355666666555421 333333344444443 3688776543321 24566677664 3577
Q ss_pred EEE-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 452 IIA-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 452 VIa-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
+|. |..... .+.+..|..+++..|-+++++.+++..++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 765 333322 34456788899999999999999987754
No 167
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=30.13 E-value=87 Score=32.66 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=46.0
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++-+..... +..++++++++.+. + ..++.++++. .|+++..+... .-.-.+.+|+.+|++|++
T Consensus 49 ~~lvav~d~~~----~~a~~~a~~~g~~~--~-----y~d~~ell~~~~iDaV~I~tP~~--~H~~~~~~al~aGkhVl~ 115 (350)
T 4had_A 49 CVVTAIASRDL----TRAREMADRFSVPH--A-----FGSYEEMLASDVIDAVYIPLPTS--QHIEWSIKAADAGKHVVC 115 (350)
T ss_dssp EEEEEEECSSH----HHHHHHHHHHTCSE--E-----ESSHHHHHHCSSCSEEEECSCGG--GHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEECCCH----HHHHHHHHHcCCCe--e-----eCCHHHHhcCCCCCEEEEeCCCc--hhHHHHHHHHhcCCEEEE
Confidence 78776665443 66788889888764 1 2477788865 68888776443 234467899999999987
No 168
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=29.90 E-value=1e+02 Score=29.66 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=33.6
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
|.++|++|.++...+.....+...+..+.+.|.+++++...+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~d 42 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGD 42 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEeccc
Confidence 457899999999999888877777777777899998887654
No 169
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=29.84 E-value=2.6e+02 Score=28.40 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=55.3
Q ss_pred CCCeEEEEecC--CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEE
Q 004092 143 RKPQLALVFPD--LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (774)
Q Consensus 143 rk~rialV~~~--L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIh 220 (774)
+...|++++++ +...-....+..+.+.+.+.||++.++........ . ......+...++|.|+
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI 124 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEE-E--------------RQAIQYLLDLRCDAIM 124 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHH-H--------------HHHHHHHHHTTCSEEE
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHH-H--------------HHHHHHHHhCCCCEEE
Confidence 45779999998 66556667778888899999999988874432211 0 0112234456899999
Q ss_pred EcCCchh-HHHHHHHhCCCCCCCEEEEEc
Q 004092 221 VNSLEAK-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 221 vhs~~~~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
+...... ..+..++. ..++|+|+.-+
T Consensus 125 i~~~~~~~~~~~~~~~--~~~iPvV~~~~ 151 (338)
T 3dbi_A 125 IYPRFLSVDEIDDIID--AHSQPIMVLNR 151 (338)
T ss_dssp ECCSSSCHHHHHHHHH--HCSSCEEEESS
T ss_pred EeCCCCChHHHHHHHH--cCCCCEEEEcC
Confidence 8754321 12333332 34589876543
No 170
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=29.78 E-value=2.5e+02 Score=29.23 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=44.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++-+..... +..++.+++++.+. ..++.+++. ..|+++..+... .-.-.+.+|+..|++|++
T Consensus 30 ~~lvav~d~~~----~~~~~~~~~~g~~~--------~~~~~~~l~~~~~D~V~i~tp~~--~h~~~~~~al~~gk~vl~ 95 (354)
T 3db2_A 30 LKLVTCYSRTE----DKREKFGKRYNCAG--------DATMEALLAREDVEMVIITVPND--KHAEVIEQCARSGKHIYV 95 (354)
T ss_dssp EEEEEEECSSH----HHHHHHHHHHTCCC--------CSSHHHHHHCSSCCEEEECSCTT--SHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEECCCH----HHHHHHHHHcCCCC--------cCCHHHHhcCCCCCEEEEeCChH--HHHHHHHHHHHcCCEEEE
Confidence 77765554433 56677777776543 357788884 589988876544 234567789999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 96 E 96 (354)
T 3db2_A 96 E 96 (354)
T ss_dssp E
T ss_pred c
Confidence 4
No 171
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=29.47 E-value=1.9e+02 Score=29.49 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=54.2
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdGiIi~ 125 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQ-E--------------LQLLRAYLQHRPDGVLIT 125 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHTTCCSEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHH-H--------------HHHHHHHHcCCCCEEEEe
Confidence 4467999999887666677788888999999999988765432211 0 111223345689988876
Q ss_pred CCchh-HHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAK-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
..... ..+..+. ..++|+|+.-.
T Consensus 126 ~~~~~~~~~~~l~---~~~iPvV~~~~ 149 (339)
T 3h5o_A 126 GLSHAEPFERILS---QHALPVVYMMD 149 (339)
T ss_dssp CSCCCTTHHHHHH---HTTCCEEEEES
T ss_pred CCCCCHHHHHHHh---cCCCCEEEEee
Confidence 54321 2233332 24689887643
No 172
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=28.92 E-value=2e+02 Score=30.07 Aligned_cols=69 Identities=22% Similarity=0.145 Sum_probs=45.6
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++.+..... +..++++++++++. .+... .++.+++. .+|+++..+... .-.-.+.+|+..|++|++
T Consensus 31 ~~lv~v~d~~~----~~~~~~a~~~~~~~-~~~~~---~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~aGk~V~~ 100 (362)
T 1ydw_A 31 ATISGVASRSL----EKAKAFATANNYPE-STKIH---GSYESLLEDPEIDALYVPLPTS--LHVEWAIKAAEKGKHILL 100 (362)
T ss_dssp EEEEEEECSSH----HHHHHHHHHTTCCT-TCEEE---SSHHHHHHCTTCCEEEECCCGG--GHHHHHHHHHTTTCEEEE
T ss_pred cEEEEEEcCCH----HHHHHHHHHhCCCC-CCeee---CCHHHHhcCCCCCEEEEcCChH--HHHHHHHHHHHCCCeEEE
Confidence 77765554333 55677888887642 22222 36677776 589999877544 234566789999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 101 E 101 (362)
T 1ydw_A 101 E 101 (362)
T ss_dssp C
T ss_pred e
Confidence 3
No 173
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=28.71 E-value=1.5e+02 Score=30.30 Aligned_cols=87 Identities=8% Similarity=-0.053 Sum_probs=51.5
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcC--ccEEE
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLN--YDGIL 220 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~--~DIIh 220 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++........ .. ..+..++ ..+ +|.|+
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~-~~-------------~~i~~l~-~~~~~vdgiI 68 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEK-GI-------------ADIRALL-QKTGGNLVLN 68 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHH-HH-------------HHHHHHH-HHTTTCEEEE
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHH-HH-------------HHHHHHH-HCCCCCCEEE
Confidence 4578999999876555556677778888899999988764332111 00 1112223 346 99999
Q ss_pred EcCCchhH---HHHHHHhCCCCCCCEEEEE
Q 004092 221 VNSLEAKV---VISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 221 vhs~~~~~---~l~~Ll~~~~~~ipvI~ti 247 (774)
+....... .+..+. ..++|+|+.-
T Consensus 69 i~~~~~~~~~~~~~~~~---~~~iPvV~~~ 95 (332)
T 2rjo_A 69 VDPNDSADARVIVEACS---KAGAYVTTIW 95 (332)
T ss_dssp ECCSSHHHHHHHHHHHH---HHTCEEEEES
T ss_pred EeCCCHHHHHHHHHHHH---HCCCeEEEEC
Confidence 87655421 122222 2358887653
No 174
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=28.70 E-value=2.2e+02 Score=27.90 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=33.0
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 48 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKK 48 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTT
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456799999987666666777788888999999998876543
No 175
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=28.66 E-value=2.6e+02 Score=27.65 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|.++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgii~~ 83 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDN-E--------------MRCIEHLLQRQVDAIIVS 83 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEEC
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHH-H--------------HHHHHHHHHcCCCEEEEe
Confidence 4567999998876544556667777888899999988764322110 0 011222334679999887
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
....... ..+......++|+|..-.
T Consensus 84 ~~~~~~~-~~~~~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 84 TSLPPEH-PFYQRWANDPFPIVALDR 108 (293)
T ss_dssp CSSCTTC-HHHHTTTTSSSCEEEEES
T ss_pred CCCCCcH-HHHHHHHhCCCCEEEECC
Confidence 5432111 111111235789887644
No 176
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.62 E-value=2.3e+02 Score=28.94 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=54.8
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
.+...|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~i~~l~~~~vdGiIi 130 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEK-E--------------EKVLYEMLSWRPSGVII 130 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHH-H--------------HHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHhCCCCEEEE
Confidence 34568999999887666667777888889999999987765432211 0 01122334568999888
Q ss_pred cCCchhH-HHHHHHhCCCCCCCEEEEE
Q 004092 222 NSLEAKV-VISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 222 hs~~~~~-~l~~Ll~~~~~~ipvI~ti 247 (774)
....... .+..+. ..++|+|..-
T Consensus 131 ~~~~~~~~~~~~l~---~~~iPvV~i~ 154 (344)
T 3kjx_A 131 AGLEHSEAARAMLD---AAGIPVVEIM 154 (344)
T ss_dssp ECSCCCHHHHHHHH---HCSSCEEEEE
T ss_pred ECCCCCHHHHHHHH---hCCCCEEEEe
Confidence 6543322 222222 3468988763
No 177
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=28.42 E-value=1.7e+02 Score=28.39 Aligned_cols=78 Identities=12% Similarity=0.188 Sum_probs=55.0
Q ss_pred eEEEEEe---C-CCCCchHHHHHHHHHHcCCCCccEEEcc----CcccHHHHHHHcCEEEEcC---------ccCcCCcc
Q 004092 377 IKVMILS---G-DSTSNYSVVIEAIAHNLHYPLGVVKHMA----AEGDVDSVLNTADVVIYGS---------FLEEQTFP 439 (774)
Q Consensus 377 v~LvIvG---G-~~~e~Y~~~L~~la~~lgL~~~~V~flG----~~~dl~~~l~aaDI~V~PS---------~~E~qGfp 439 (774)
-++.++. | +..++|...+++..+++|.+ +..+. ..++..+.+..||.+++|- ..+ .|+-
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~---v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~-~gl~ 103 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLL---VEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKR-TGAD 103 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCE---EEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHH-HTHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCe---EEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHH-CChH
Confidence 4666776 3 34456777788888888873 55563 4467778899999999985 112 1455
Q ss_pred HHHHHHHHcCCCEEEcCCc
Q 004092 440 EILVKALCFRKPIIAPDLS 458 (774)
Q Consensus 440 ~~llEAMA~G~PVIatd~g 458 (774)
-.+-|+...|+|++.+-.|
T Consensus 104 ~~l~~~~~~G~p~~G~sAG 122 (206)
T 3l4e_A 104 KLILEEIAAGKLYIGESAG 122 (206)
T ss_dssp HHHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHHcCCeEEEECHH
Confidence 5778888999999987654
No 178
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.35 E-value=55 Score=32.11 Aligned_cols=100 Identities=14% Similarity=0.038 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc-C-cccHHHHHHHcCEE
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-A-EGDVDSVLNTADVV 427 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG-~-~~dl~~~l~aaDI~ 427 (774)
|-.+.|.+|+..+....+ -.++++| .+.. ...+++.++.-|-...+=.|+| . .+....-+..=|++
T Consensus 47 kT~~~L~~A~~~i~~~~~--------~~ilfV~tk~~~---~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdll 115 (202)
T 3j20_B 47 KTDERLKVAGKFLAKFEP--------QSILAVSVRLYG---QKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVL 115 (202)
T ss_dssp HHHHHHHHHHHHHHHSCS--------SCEEEECCCTTT---HHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEE
T ss_pred HHHHHHHHHHHHHHhhCC--------CeEEEEecChHH---HHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeE
Confidence 445556667666654433 3778899 4433 3667777776664431223454 1 12222223456776
Q ss_pred EEcCccCcCCccHHHHHHHHcCCCEEE-cCCccccccc
Q 004092 428 IYGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYV 464 (774)
Q Consensus 428 V~PS~~E~qGfp~~llEAMA~G~PVIa-td~ggi~EiV 464 (774)
+..-...+ -.++.||-..|+|+|+ .|....++.|
T Consensus 116 vv~Dp~~d---~~ai~EA~~l~IP~Ial~DTn~~p~~V 150 (202)
T 3j20_B 116 IVTDPRAD---HQAMREAVEIGIPIVALVDTENLLSYV 150 (202)
T ss_dssp EESCTTTS---HHHHHHHHHHTCCEEEEECTTCCCTTC
T ss_pred EEeCCccc---hHHHHHHHHcCCCEEEEEcCCCCcccc
Confidence 66543332 5789999999999998 3444444444
No 179
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=28.26 E-value=1.8e+02 Score=30.38 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=43.3
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
+.++-+..... +..++.+++++.. . ..++.+++. .+|+++..+... .-.-.+.+|+..|++|++
T Consensus 39 ~~lvav~d~~~----~~~~~~~~~~~~~-----~---~~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~~gk~v~~ 104 (354)
T 3q2i_A 39 AELIDVCDIDP----AALKAAVERTGAR-----G---HASLTDMLAQTDADIVILTTPSG--LHPTQSIECSEAGFHVMT 104 (354)
T ss_dssp EEEEEEECSSH----HHHHHHHHHHCCE-----E---ESCHHHHHHHCCCSEEEECSCGG--GHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEEcCCH----HHHHHHHHHcCCc-----e---eCCHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHHCCCCEEE
Confidence 77765554333 5566777766541 1 247777887 689988876444 234467789999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 105 E 105 (354)
T 3q2i_A 105 E 105 (354)
T ss_dssp C
T ss_pred e
Confidence 4
No 180
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.18 E-value=2.8e+02 Score=23.70 Aligned_cols=108 Identities=10% Similarity=0.193 Sum_probs=64.5
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHH---cCCCE
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALC---FRKPI 452 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA---~G~PV 452 (774)
+++|+..... ....++......+. .|.......+....+. ..|++++-..... .-|..+++.+. ..+||
T Consensus 6 ~ILivdd~~~--~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~~i 79 (137)
T 3cfy_A 6 RVLLVEDSTS--LAILYKQYVKDEPY---DIFHVETGRDAIQFIERSKPQLIILDLKLPD-MSGEDVLDWINQNDIPTSV 79 (137)
T ss_dssp EEEEECSCTT--HHHHHHHHTTTSSS---EEEEESSHHHHHHHHHHHCCSEEEECSBCSS-SBHHHHHHHHHHTTCCCEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHhcCc---eEEEeCCHHHHHHHHHhcCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCE
Confidence 6777773321 23445555443332 3544444445555544 3688887654432 34666777665 35676
Q ss_pred EE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 453 IA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 453 Ia-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|. |.... ..+.+..|..+++..|-+.++|..+|..++..
T Consensus 80 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 80 IIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 55 33332 23445678889999999999999999887765
No 181
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=28.11 E-value=2.8e+02 Score=23.65 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=67.0
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHc-CCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc---CC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNL-HYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RK 450 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~l-gL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~---G~ 450 (774)
.+++|+.... .....+.....+. +.. .|.......+....+.. .|++++-..... .-|..+++.+.. ..
T Consensus 10 ~~iLivdd~~--~~~~~l~~~L~~~~~~~--~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 84 (143)
T 2qv0_A 10 MKVIIVEDEF--LAQQELSWLINTHSQME--IVGSFDDGLDVLKFLQHNKVDAIFLDINIPS-LDGVLLAQNISQFAHKP 84 (143)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHHSCCE--EEEEESCHHHHHHHHHHCCCSEEEECSSCSS-SCHHHHHHHHTTSTTCC
T ss_pred eEEEEEcCCH--HHHHHHHHHHHhCCCce--EEEEeCCHHHHHHHHHhCCCCEEEEecCCCC-CCHHHHHHHHHccCCCc
Confidence 6788887332 1235566666544 221 13333444555555543 688887654432 356777777754 34
Q ss_pred CEEE-cCCc-ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 451 PIIA-PDLS-NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa-td~g-gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|||. |... ...+.+..|..+++..|-+.++|..+|..++..
T Consensus 85 ~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 85 FIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 4543 3332 233455678889999999999999999988876
No 182
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.98 E-value=2.3e+02 Score=29.22 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=52.9
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdGiI~~ 133 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPER-E--------------EQLVETMLRRRPEAMVLS 133 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHTCCSEEEEE
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHH-H--------------HHHHHHHHhCCCCEEEEe
Confidence 3467999999887666666777888899999999988765432211 0 111223345689998886
Q ss_pred CCchhH-HHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAKV-VISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~~-~l~~Ll~~~~~~ipvI~t 246 (774)
...... .+..+. ..++|+|..
T Consensus 134 ~~~~~~~~~~~l~---~~~iPvV~i 155 (355)
T 3e3m_A 134 YDGHTEQTIRLLQ---RASIPIVEI 155 (355)
T ss_dssp CSCCCHHHHHHHH---HCCSCEEEE
T ss_pred CCCCCHHHHHHHH---hCCCCEEEE
Confidence 543322 233232 346898875
No 183
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=27.89 E-value=1.3e+02 Score=31.50 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=43.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++-+..... +..++++++++.+. ..++.+++. ..|+++..+... .-.-.+.+|+.+|++|++
T Consensus 53 ~~l~av~d~~~----~~~~~~a~~~g~~~--------~~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~aGk~Vl~ 118 (350)
T 3rc1_A 53 TEVTAIASRRW----DRAKRFTERFGGEP--------VEGYPALLERDDVDAVYVPLPAV--LHAEWIDRALRAGKHVLA 118 (350)
T ss_dssp EEEEEEEESSH----HHHHHHHHHHCSEE--------EESHHHHHTCTTCSEEEECCCGG--GHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEEcCCH----HHHHHHHHHcCCCC--------cCCHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHHCCCcEEE
Confidence 77765553332 55667777776542 157778886 589988876544 234467789999999886
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
=
T Consensus 119 E 119 (350)
T 3rc1_A 119 E 119 (350)
T ss_dssp E
T ss_pred e
Confidence 3
No 184
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=27.81 E-value=2.3e+02 Score=28.16 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=54.3
Q ss_pred CCCeEEEEec----CCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccE
Q 004092 143 RKPQLALVFP----DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDG 218 (774)
Q Consensus 143 rk~rialV~~----~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DI 218 (774)
+...|+++++ ++...-....+..+.+.+.+.||++.++...+.. ....+...+...++|.
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~----------------~~~~~~~~l~~~~vdG 68 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGE----------------KYQSLIHLVETRRVDA 68 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTC----------------CCHHHHHHHHHTCCSE
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChh----------------hHHHHHHHHHcCCCCE
Confidence 4567899998 5544445566777788889999999988754211 0122344555678999
Q ss_pred EEEcCCchh-HHHHHHHhCCCCCCCEEEEEc
Q 004092 219 ILVNSLEAK-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 219 Ihvhs~~~~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
|++...... ..+..+. ..++|+|+.-+
T Consensus 69 iIi~~~~~~~~~~~~l~---~~~iPvV~~~~ 96 (294)
T 3qk7_A 69 LIVAHTQPEDFRLQYLQ---KQNFPFLALGR 96 (294)
T ss_dssp EEECSCCSSCHHHHHHH---HTTCCEEEESC
T ss_pred EEEeCCCCChHHHHHHH---hCCCCEEEECC
Confidence 998765422 2333333 24689886544
No 185
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=27.55 E-value=90 Score=29.41 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=32.8
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
+++++|..+. .|-.+..+..+++.+.+.|++|.++...+
T Consensus 6 ~kilii~~S~-~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSR-HGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred ceEEEEEeCC-CChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 4888888885 67788888899999999999999987755
No 186
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=27.50 E-value=2.3e+02 Score=26.77 Aligned_cols=108 Identities=14% Similarity=0.193 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH---------------HcCEEEEcCccCcCCccHH
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN---------------TADVVIYGSFLEEQTFPEI 441 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~---------------aaDI~V~PS~~E~qGfp~~ 441 (774)
.+++|+-... .....+..+.++.|... |.......+..+++. ..|++|+=..... .-|..
T Consensus 62 ~~ILiVdDd~--~~~~~l~~~L~~~g~~~--v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~-~~G~e 136 (206)
T 3mm4_A 62 KRVLVVDDNF--ISRKVATGKLKKMGVSE--VEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPE-MDGYE 136 (206)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSS-SCHHH
T ss_pred CEEEEEeCCH--HHHHHHHHHHHHcCCCe--eeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCC-CCHHH
Confidence 5777777321 23466777777776643 666655556656554 3688887654432 45777
Q ss_pred HHHHHH-------cCCCEEE-cCCc-c---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 442 LVKALC-------FRKPIIA-PDLS-N---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 442 llEAMA-------~G~PVIa-td~g-g---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+++.+. ..+|||. |... . ..+.+..|..+++..|-+ +|.++|..++..
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESK 196 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC--
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhh
Confidence 777665 4578765 3332 2 234456788899999876 899999888876
No 187
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=27.09 E-value=82 Score=31.64 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=55.1
Q ss_pred CCCeEEEEecCCCCChHH-HHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 143 RKPQLALVFPDLLIDPQQ-LQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e-~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
+...|+++++++...-.. ..+..+.+.+.+.||++.++........ . ......+...++|.|++
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdGiIi 76 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSER-E--------------VEIWKMFQSHRIDGVLY 76 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHH-H--------------HHHHHHHHhCCCCEEEE
Confidence 457799999988755555 6778888999999999998775432211 0 11223344568998887
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 222 NSLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 222 hs~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
....... .+......++|+|..-+
T Consensus 77 ~~~~~~~---~~~~~~~~~iPvV~~~~ 100 (301)
T 3miz_A 77 VTMYRRI---VDPESGDVSIPTVMINC 100 (301)
T ss_dssp EEEEEEE---CCCCCTTCCCCEEEEEE
T ss_pred ecCCccH---HHHHHHhCCCCEEEECC
Confidence 6544321 11112245789887644
No 188
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=27.05 E-value=1.7e+02 Score=28.91 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=48.8
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
..|.++++++...-....+..+.+.+.+.||++.++........ .. ..+..+ ...++|.|++...
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~i~~l-~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSK-EL-------------SNVEDL-IQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHH-HH-------------HHHHHH-HHTTCSEEEECCS
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHH-HH-------------HHHHHH-HHcCCCEEEEeCC
Confidence 36788888876544556667777888899999988764332111 10 111222 3568999888654
Q ss_pred chh---HHHHHHHhCCCCCCCEEEE
Q 004092 225 EAK---VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 225 ~~~---~~l~~Ll~~~~~~ipvI~t 246 (774)
... ..+..+. ..++|+|..
T Consensus 67 ~~~~~~~~~~~~~---~~~iPvV~~ 88 (283)
T 2ioy_A 67 DSDAVVTAIKEAN---SKNIPVITI 88 (283)
T ss_dssp STTTTHHHHHHHH---HTTCCEEEE
T ss_pred chhhhHHHHHHHH---HCCCeEEEe
Confidence 321 1222222 246898764
No 189
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=26.89 E-value=3.5e+02 Score=24.96 Aligned_cols=109 Identities=11% Similarity=0.034 Sum_probs=66.4
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+.... .....+....+..|. .|.......+....+.. .|++++-..... .-|..+++.+. .++|
T Consensus 5 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ 78 (208)
T 1yio_A 5 PTVFVVDDDM--SVREGLRNLLRSAGF---EVETFDCASTFLEHRRPEQHGCLVLDMRMPG-MSGIELQEQLTAISDGIP 78 (208)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHTTTC---EEEEESSHHHHHHHCCTTSCEEEEEESCCSS-SCHHHHHHHHHHTTCCCC
T ss_pred CEEEEEcCCH--HHHHHHHHHHHhCCc---eEEEcCCHHHHHHhhhccCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCC
Confidence 4677776321 233556666664443 35444433444444433 577776543332 35677777765 3678
Q ss_pred EEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |... ...+.+..|..|++..|.+++++..+|..++..
T Consensus 79 ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 79 IVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 765 3332 234455678889999999999999999988875
No 190
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=26.89 E-value=2.2e+02 Score=29.35 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=43.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++.+..... +..++++++++... + ..++.+++. .+|+++..+... .-.-.+.+|+..|++|++
T Consensus 34 ~~~vav~d~~~----~~~~~~a~~~g~~~--~-----~~~~~~~l~~~~~D~V~i~tp~~--~h~~~~~~al~~G~~v~~ 100 (346)
T 3cea_A 34 VKLVAACALDS----NQLEWAKNELGVET--T-----YTNYKDMIDTENIDAIFIVAPTP--FHPEMTIYAMNAGLNVFC 100 (346)
T ss_dssp EEEEEEECSCH----HHHHHHHHTTCCSE--E-----ESCHHHHHTTSCCSEEEECSCGG--GHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEecCCH----HHHHHHHHHhCCCc--c-----cCCHHHHhcCCCCCEEEEeCChH--hHHHHHHHHHHCCCEEEE
Confidence 77766554333 55667777665432 1 146777776 589998877544 234456789999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 101 e 101 (346)
T 3cea_A 101 E 101 (346)
T ss_dssp C
T ss_pred c
Confidence 4
No 191
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=26.57 E-value=1.8e+02 Score=29.24 Aligned_cols=86 Identities=9% Similarity=0.040 Sum_probs=48.2
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
.+|.++.+.... -.......+.+.+.+.||++.++........... ..+.. +...++|.|++...
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~i~~-l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQL-------------QMLES-FIAEGVNGIAIAPS 66 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHH-------------HHHHH-HHHTTCSEEEECCS
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHH-------------HHHHH-HHHcCCCEEEEeCC
Confidence 468888887654 4455566667778889999887653221111110 01122 23467999988654
Q ss_pred chh---HHHHHHHhCCCCCCCEEEEEc
Q 004092 225 EAK---VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 225 ~~~---~~l~~Ll~~~~~~ipvI~tiH 248 (774)
... ..+..+. ..++|+|..-.
T Consensus 67 ~~~~~~~~~~~~~---~~~iPvV~~~~ 90 (313)
T 2h3h_A 67 DPTAVIPTIKKAL---EMGIPVVTLDT 90 (313)
T ss_dssp STTTTHHHHHHHH---HTTCCEEEESS
T ss_pred ChHHHHHHHHHHH---HCCCeEEEeCC
Confidence 332 1222222 24689886543
No 192
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=26.49 E-value=72 Score=27.88 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=47.9
Q ss_pred eEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHHc--CCCE
Q 004092 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF--RKPI 452 (774)
Q Consensus 377 v~LvIvG--G~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA~--G~PV 452 (774)
.++++++ |-...-.-..+++.+++.|++- .+.-.+ ..++.+.+...|++++..... +-..=++..+- |+||
T Consensus 7 mkIlL~C~aGmSTsllv~km~~~a~~~gi~v-~i~a~~-~~~~~~~~~~~DvvLLgPQV~---y~~~~ik~~~~~~~ipV 81 (108)
T 3nbm_A 7 LKVLVLCAGSGTSAQLANAINEGANLTEVRV-IANSGA-YGAHYDIMGVYDLIILAPQVR---SYYREMKVDAERLGIQI 81 (108)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHTCSE-EEEEEE-TTSCTTTGGGCSEEEECGGGG---GGHHHHHHHHTTTTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCce-EEEEcc-hHHHHhhccCCCEEEEChHHH---HHHHHHHHHhhhcCCcE
Confidence 5655555 6554445567788888888764 332222 234566778899999876433 34455566654 8999
Q ss_pred EEcCC
Q 004092 453 IAPDL 457 (774)
Q Consensus 453 Iatd~ 457 (774)
..-+.
T Consensus 82 ~vI~~ 86 (108)
T 3nbm_A 82 VATRG 86 (108)
T ss_dssp EECCH
T ss_pred EEeCH
Confidence 88653
No 193
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=26.47 E-value=2.7e+02 Score=22.91 Aligned_cols=107 Identities=13% Similarity=0.171 Sum_probs=64.4
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc--CCCEE
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF--RKPII 453 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~--G~PVI 453 (774)
+++|+.... .....++...+..+. .|.......+....+.. .|++++-..... .-|..+++.+.. ..|+|
T Consensus 4 ~ilivdd~~--~~~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ii 77 (122)
T 1zgz_A 4 HIVIVEDEP--VTQARLQSYFTQEGY---TVSVTASGAGLREIMQNQSVDLILLDINLPD-ENGLMLTRALRERSTVGII 77 (122)
T ss_dssp EEEEECSSH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEEESCCSS-SCHHHHHHHHHTTCCCEEE
T ss_pred EEEEEECCH--HHHHHHHHHHHHCCC---eEEEecCHHHHHHHHhcCCCCEEEEeCCCCC-CChHHHHHHHHhcCCCCEE
Confidence 566666321 223556666665443 35444444555555543 688876544332 346677777753 56665
Q ss_pred E-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHH
Q 004092 454 A-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVIT 490 (774)
Q Consensus 454 a-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~ 490 (774)
. |..... .+.+..|..+++..|-+.+++..+|..++.
T Consensus 78 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 78 LVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 4 333322 334566788999999999999999988765
No 194
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=26.17 E-value=2.5e+02 Score=23.84 Aligned_cols=109 Identities=12% Similarity=0.258 Sum_probs=64.3
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH-cCEEEEcCccCcCCccHHHHHHHH--c-----
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT-ADVVIYGSFLEEQTFPEILVKALC--F----- 448 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a-aDI~V~PS~~E~qGfp~~llEAMA--~----- 448 (774)
.+++|+.... .....++...+..|. .|.......+....+.. .|++++-..... .-|..+++.+. .
T Consensus 8 ~~ILivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~dlvllD~~lp~-~~g~~~~~~l~~~~~~~~~ 81 (136)
T 1dcf_A 8 LKVLVMDENG--VSRMVTKGLLVHLGC---EVTTVSSNEECLRVVSHEHKVVFMDVCMPG-VENYQIALRIHEKFTKQRH 81 (136)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHCCTTCSEEEEECCSST-TTTTHHHHHHHHHHC-CCS
T ss_pred CeEEEEeCCH--HHHHHHHHHHHHcCC---eEEEeCCHHHHHHHHhccCCEEEEeCCCCC-CcHHHHHHHHHHhhhhccC
Confidence 6777777321 223556666665544 35444433444444432 388887543321 23556666664 1
Q ss_pred CCC-EE-EcCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 449 RKP-II-APDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 449 G~P-VI-atd~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
..| || .|..... .+.+..|..+++..|-+.++|.++|..++..
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 82 QRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 234 54 4544433 2345678889999999999999999988865
No 195
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.09 E-value=2.2e+02 Score=28.65 Aligned_cols=88 Identities=13% Similarity=0.085 Sum_probs=48.9
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCC----eEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccE
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGY----AIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDG 218 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~----eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DI 218 (774)
+...|.++ +++...-....+..+-+.+.+.|| ++.++........... ......+...++|+
T Consensus 7 ~t~~IGvi-~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~-------------~~~~~~l~~~~vDg 72 (302)
T 2qh8_A 7 KTAKVAVS-QIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIA-------------VQIARQFVGENPDV 72 (302)
T ss_dssp CCEEEEEE-ESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHH-------------HHHHHHHHHTCCSE
T ss_pred CCcEEEEE-EeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHH-------------HHHHHHHHhCCCCE
Confidence 34567766 555544456667778889999999 6655432221111110 11223345678999
Q ss_pred EEEcCCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 219 ILVNSLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 219 Ihvhs~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
|++...... ..+.. ...++|+|+.-.
T Consensus 73 II~~~~~~~---~~~~~-~~~~iPvV~~~~ 98 (302)
T 2qh8_A 73 LVGIATPTA---QALVS-ATKTIPIVFTAV 98 (302)
T ss_dssp EEEESHHHH---HHHHH-HCSSSCEEEEEE
T ss_pred EEECChHHH---HHHHh-cCCCcCEEEEec
Confidence 998654321 11221 256799987643
No 196
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=26.02 E-value=2.8e+02 Score=22.98 Aligned_cols=108 Identities=10% Similarity=0.132 Sum_probs=65.7
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc--CCCEE
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF--RKPII 453 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~--G~PVI 453 (774)
+++|+.... .....++...++.|. .|.......+....+.. .|++++-..... .-|..+++.+.. ..|||
T Consensus 4 ~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlii~D~~~p~-~~g~~~~~~lr~~~~~~ii 77 (120)
T 3f6p_A 4 KILVVDDEK--PIADILEFNLRKEGY---EVHCAHDGNEAVEMVEELQPDLILLDIMLPN-KDGVEVCREVRKKYDMPII 77 (120)
T ss_dssp EEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHTTCCSEEEEETTSTT-THHHHHHHHHHTTCCSCEE
T ss_pred eEEEEECCH--HHHHHHHHHHHhCCE---EEEEeCCHHHHHHHHhhCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEE
Confidence 566666321 223556666665554 35444444555555543 688777554332 346667776643 56776
Q ss_pred E-cCCccc---ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 454 A-PDLSNI---RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 454 a-td~ggi---~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
. |..... .+.+..|..+++..|-+.+++..+|..++..
T Consensus 78 ~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 78 MLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 5 332222 2345678889999999999999999887753
No 197
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=25.99 E-value=1.9e+02 Score=31.05 Aligned_cols=68 Identities=10% Similarity=-0.024 Sum_probs=45.8
Q ss_pred eEEEE-EeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH-------cCEEEEcCccCcCCccHHHHHHHHc
Q 004092 377 IKVMI-LSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT-------ADVVIYGSFLEEQTFPEILVKALCF 448 (774)
Q Consensus 377 v~LvI-vGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a-------aDI~V~PS~~E~qGfp~~llEAMA~ 448 (774)
+.++. +..... +..++.+++++++. .. ...++.+++.. .|+++..+... .-.-.+.+|+.+
T Consensus 65 ~~lva~v~d~~~----~~a~~~a~~~g~~~--~~---~~~~~~~ll~~~~~~~~~vD~V~I~tp~~--~H~~~~~~al~a 133 (417)
T 3v5n_A 65 YELVAGALSSTP----EKAEASGRELGLDP--SR---VYSDFKEMAIREAKLKNGIEAVAIVTPNH--VHYAAAKEFLKR 133 (417)
T ss_dssp EEEEEEECCSSH----HHHHHHHHHHTCCG--GG---BCSCHHHHHHHHHHCTTCCSEEEECSCTT--SHHHHHHHHHTT
T ss_pred cEEEEEEeCCCH----HHHHHHHHHcCCCc--cc---ccCCHHHHHhcccccCCCCcEEEECCCcH--HHHHHHHHHHhC
Confidence 66653 333333 66778888888863 11 12577788877 89998877544 234567889999
Q ss_pred CCCEEEc
Q 004092 449 RKPIIAP 455 (774)
Q Consensus 449 G~PVIat 455 (774)
|++|++=
T Consensus 134 GkhVl~E 140 (417)
T 3v5n_A 134 GIHVICD 140 (417)
T ss_dssp TCEEEEE
T ss_pred CCeEEEE
Confidence 9999873
No 198
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=25.95 E-value=3.1e+02 Score=23.39 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=64.3
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH-------
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC------- 447 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA------- 447 (774)
.+++|+.... .....+....+..+ . .|.......+....+.. .|++++-..... .-|..+++.+.
T Consensus 11 ~~iLivdd~~--~~~~~l~~~L~~~~--~-~v~~~~~~~~al~~l~~~~~dlvllD~~lp~-~~g~~~~~~l~~~~~~~~ 84 (140)
T 3c97_A 11 LSVLIAEDND--ICRLVAAKALEKCT--N-DITVVTNGLQALQAYQNRQFDVIIMDIQMPV-MDGLEAVSEIRNYERTHN 84 (140)
T ss_dssp CEEEEECCCH--HHHHHHHHHHTTTC--S-EEEEESSHHHHHHHHHHSCCSEEEECTTCCS-SCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEcCCH--HHHHHHHHHHHHcC--C-ceEEECCHHHHHHHHhcCCCCEEEEeCCCCC-CcHHHHHHHHHhhhhhcC
Confidence 4677776322 12344555554333 2 46555555555555543 688887554332 34666777664
Q ss_pred -cCCCEEE-cCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 448 -FRKPIIA-PDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 448 -~G~PVIa-td~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
...|+|. |...........|..|++..|-+.++|.++|..++..
T Consensus 85 ~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 85 TKRASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp CCCCCCEEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CCceEEEEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 2456655 3333222333556679999999999999999988754
No 199
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=25.79 E-value=1.4e+02 Score=29.46 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=52.9
Q ss_pred CCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCe-EEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEE
Q 004092 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYA-IQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (774)
Q Consensus 142 ~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~e-V~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIh 220 (774)
.+...|+++++++...-....+..+.+.+.+.||+ +.++........ . ......+...++|.|+
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI 72 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKK-Y--------------QNAIINFENNNVDGII 72 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHH-H--------------HHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHH-H--------------HHHHHHHHhCCCCEEE
Confidence 34678999999887666667777888889999999 666544332111 1 1112334456899988
Q ss_pred EcCCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 221 VNSLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 221 vhs~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
+..... ......++|+|..-+
T Consensus 73 i~~~~~-------~~~~~~~iPvV~~~~ 93 (277)
T 3hs3_A 73 TSAFTI-------PPNFHLNTPLVMYDS 93 (277)
T ss_dssp EECCCC-------CTTCCCSSCEEEESC
T ss_pred EcchHH-------HHHHhCCCCEEEEcc
Confidence 876211 111245789886543
No 200
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=25.74 E-value=2e+02 Score=28.19 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=24.6
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCc
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR 186 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~ 186 (774)
+++++|.++.. -.+..+--....+.+.|++|.|++...++
T Consensus 2 ~~vL~v~aHPD--De~l~~ggtia~~~~~G~~v~vv~lT~G~ 41 (227)
T 1uan_A 2 LDLLVVAPHPD--DGELGCGGTLARAKAEGLSTGILDLTRGE 41 (227)
T ss_dssp EEEEEEESSTT--HHHHHHHHHHHHHHHTTCCEEEEEEECCT
T ss_pred ceEEEEEeCCC--cHHHhHHHHHHHHHhCCCcEEEEEEcCCC
Confidence 46777777643 33333333334455789999998876654
No 201
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.70 E-value=1.5e+02 Score=29.72 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=53.2
Q ss_pred CCCeEEEEecC-----CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCcc
Q 004092 143 RKPQLALVFPD-----LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYD 217 (774)
Q Consensus 143 rk~rialV~~~-----L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~D 217 (774)
+...|++++++ +...-....+..+.+.+.+.||++.++........ .......+...++|
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---------------~~~~~~~l~~~~vd 85 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDL---------------YHEVKTMIQSKSVD 85 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHH---------------HHHHHHHHHTTCCS
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHH---------------HHHHHHHHHhCCCC
Confidence 35679999998 54444556677778888999999987654321100 01123345567899
Q ss_pred EEEEcCCchh-HHHHHHHhCCCCCCCEEEEEc
Q 004092 218 GILVNSLEAK-VVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 218 IIhvhs~~~~-~~l~~Ll~~~~~~ipvI~tiH 248 (774)
.|++...... ..+..+. ..++|+|..-.
T Consensus 86 giIi~~~~~~~~~~~~l~---~~~iPvV~i~~ 114 (305)
T 3huu_A 86 GFILLYSLKDDPIEHLLN---EFKVPYLIVGK 114 (305)
T ss_dssp EEEESSCBTTCHHHHHHH---HTTCCEEEESC
T ss_pred EEEEeCCcCCcHHHHHHH---HcCCCEEEECC
Confidence 9998754321 2333332 24689886544
No 202
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=25.68 E-value=71 Score=34.24 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCEEEEEEecccccccccccHHHHHHHHHHchhhcccCCCCCCCeEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 004092 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (774)
Q Consensus 333 ~~~vIl~vGsrl~~~KgiKg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG 412 (774)
.+..|..+|.-+ . +.+ ++|+..+.+ . ++++-+..... +..+++++++|++- | .
T Consensus 6 ~~~rv~VvG~G~--g---~~h---~~a~~~~~~---~-------~elvav~~~~~----~~a~~~a~~~gv~~----~-~ 58 (372)
T 4gmf_A 6 PKQRVLIVGAKF--G---EMY---LNAFMQPPE---G-------LELVGLLAQGS----ARSRELAHAFGIPL----Y-T 58 (372)
T ss_dssp -CEEEEEECSTT--T---HHH---HHTTSSCCT---T-------EEEEEEECCSS----HHHHHHHHHTTCCE----E-S
T ss_pred CCCEEEEEehHH--H---HHH---HHHHHhCCC---C-------eEEEEEECCCH----HHHHHHHHHhCCCE----E-C
Confidence 456788888322 2 323 555544332 2 66664444444 66778899887641 2 2
Q ss_pred CcccHHHHHHHcCEEEEcCccCc-CCc-cHHHHHHHHcCCCEEEc
Q 004092 413 AEGDVDSVLNTADVVIYGSFLEE-QTF-PEILVKALCFRKPIIAP 455 (774)
Q Consensus 413 ~~~dl~~~l~aaDI~V~PS~~E~-qGf-p~~llEAMA~G~PVIat 455 (774)
++.+++...|+++..+.... .+. --....|+.+|++|++=
T Consensus 59 ---~~~~l~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~E 100 (372)
T 4gmf_A 59 ---SPEQITGMPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQE 100 (372)
T ss_dssp ---SGGGCCSCCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEE
T ss_pred ---CHHHHhcCCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEe
Confidence 23334456788765442210 011 12467889999999884
No 203
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=25.67 E-value=1.9e+02 Score=27.26 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHcCEEEEcCccCcCCccHHHHHHHH---cCCCEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC---FRKPII 453 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aaDI~V~PS~~E~qGfp~~llEAMA---~G~PVI 453 (774)
.+++|+.... .....+....+..+ .|.......+....+...|++++-..... .-|..+++.+. ..+|||
T Consensus 3 ~~ilivdd~~--~~~~~l~~~L~~~~----~v~~~~~~~~al~~~~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 3 WKIAVVDDDK--NILKKVSEKLQQLG----RVKTFLTGEDFLNDEEAFHVVVLDVMLPD-YSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp EEEEEECSCH--HHHHHHHHHHTTTE----EEEEESSHHHHHHCCSCCSEEEEESBCSS-SBHHHHHHHHHHHCTTSEEE
T ss_pred ceEEEEeCCH--HHHHHHHHHHHhCC----CEEEECCHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 3566666321 12244444444333 34444433343333356788887544332 34666776664 467776
Q ss_pred E-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 454 A-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 454 a-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
. |.... ..+.+..|..|++..|.++++|..+|..++..
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 76 LLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 5 33332 23445678889999999999999999877765
No 204
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=25.63 E-value=1.8e+02 Score=23.56 Aligned_cols=106 Identities=9% Similarity=0.107 Sum_probs=63.8
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH-----cCC
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC-----FRK 450 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA-----~G~ 450 (774)
+++|+.... .....+....+..|. .|......++....+.. .|++++-..... .-+..+++.+. ..+
T Consensus 3 ~iliv~~~~--~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~-~~~~~~~~~l~~~~~~~~~ 76 (119)
T 2j48_A 3 HILLLEEED--EAATVVCEMLTAAGF---KVIWLVDGSTALDQLDLLQPIVILMAWPPPD-QSCLLLLQHLREHQADPHP 76 (119)
T ss_dssp EEEEECCCH--HHHHHHHHHHHHTTC---EEEEESCHHHHHHHHHHHCCSEEEEECSTTC-CTHHHHHHHHHHTCCCSSC
T ss_pred EEEEEeCCH--HHHHHHHHHHHhCCc---EEEEecCHHHHHHHHHhcCCCEEEEecCCCC-CCHHHHHHHHHhccccCCC
Confidence 566666321 223556666665554 35555544555555443 588776543332 34677787775 456
Q ss_pred CEEE-cCCcccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 004092 451 PIIA-PDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (774)
Q Consensus 451 PVIa-td~ggi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll 489 (774)
|+|. ++.....+....|..+++..|-+.+++.++|..++
T Consensus 77 ~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 77 PLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 7765 33322225556677789988889999999887654
No 205
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=25.61 E-value=2.5e+02 Score=30.43 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=44.5
Q ss_pred eEEEEEeCCCCCchHHHHHHHHH---HcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAH---NLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~---~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~P 451 (774)
++++-+..... +..++.++ +++++. .-.+.+..+++.++++ ..|+++..+... .-.-.+++||.+|++
T Consensus 45 ~~lvav~d~~~----~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~--~h~~~~~~al~aGkh 117 (444)
T 2ixa_A 45 VEIVAFADPDP----YMVGRAQEILKKNGKKP-AKVFGNGNDDYKNMLKDKNIDAVFVSSPWE--WHHEHGVAAMKAGKI 117 (444)
T ss_dssp EEEEEEECSCH----HHHHHHHHHHHHTTCCC-CEEECSSTTTHHHHTTCTTCCEEEECCCGG--GHHHHHHHHHHTTCE
T ss_pred cEEEEEEeCCH----HHHHHHHHHHHhcCCCC-CceeccCCCCHHHHhcCCCCCEEEEcCCcH--HHHHHHHHHHHCCCe
Confidence 77776664433 44445444 456654 2233322347788887 488888876544 234566789999999
Q ss_pred EEEc
Q 004092 452 IIAP 455 (774)
Q Consensus 452 VIat 455 (774)
|++-
T Consensus 118 V~~E 121 (444)
T 2ixa_A 118 VGME 121 (444)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9873
No 206
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=25.56 E-value=2.8e+02 Score=27.40 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|.++++++...-....+..+.+.+.+.||++.++........ ..... .....+...++|.|++.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~~~~~-----------~~~~~l~~~~vdgiIi~ 74 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTP-REQAL-----------EAVRFLIGRDCDGVVVI 74 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCH-HHHHH-----------HHHHHHHHTTCSEEEEC
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhh-hhhHH-----------HHHHHHHhcCccEEEEe
Confidence 4567899998865444455666777888899999987654322111 00000 01223345689999887
Q ss_pred CCch-hHHHHHHHhCCCCCCCEEEEE
Q 004092 223 SLEA-KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 223 s~~~-~~~l~~Ll~~~~~~ipvI~ti 247 (774)
.... ...+..+. ..++|+|..-
T Consensus 75 ~~~~~~~~~~~l~---~~~iPvV~~~ 97 (290)
T 2rgy_A 75 SHDLHDEDLDELH---RMHPKMVFLN 97 (290)
T ss_dssp CSSSCHHHHHHHH---HHCSSEEEES
T ss_pred cCCCCHHHHHHHh---hcCCCEEEEc
Confidence 5432 12333332 2458988653
No 207
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=25.52 E-value=2.1e+02 Score=30.10 Aligned_cols=66 Identities=6% Similarity=0.127 Sum_probs=44.5
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
++++-+..... +..++.+++++... + ..++.+++.. .|+++..+... .-.-.+..|+.+|++|++
T Consensus 51 ~~lvav~d~~~----~~a~~~a~~~~~~~--~-----~~~~~~ll~~~~vD~V~I~tp~~--~H~~~~~~al~aGkhVl~ 117 (361)
T 3u3x_A 51 ARLAGFHEKDD----ALAAEFSAVYADAR--R-----IATAEEILEDENIGLIVSAAVSS--ERAELAIRAMQHGKDVLV 117 (361)
T ss_dssp CEEEEEECSCH----HHHHHHHHHSSSCC--E-----ESCHHHHHTCTTCCEEEECCCHH--HHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEEcCCH----HHHHHHHHHcCCCc--c-----cCCHHHHhcCCCCCEEEEeCChH--HHHHHHHHHHHCCCeEEE
Confidence 77776664443 56677888776432 1 2577788875 78888776433 123466799999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
=
T Consensus 118 E 118 (361)
T 3u3x_A 118 D 118 (361)
T ss_dssp E
T ss_pred e
Confidence 3
No 208
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.37 E-value=2.5e+02 Score=27.47 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++... .... .......+...++|.|+ .
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~---------------~~~~~~~l~~~~vdgiI-~ 66 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQA---------------GTDPITSALSMRPDGII-I 66 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCS---------------SSCHHHHHHTTCCSEEE-E
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchH---------------HHHHHHHHHhCCCCEEE-e
Confidence 46789999998876666777888888999999999988765 2211 01112334556899988 4
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
..... -. .+.. .++|+|+.-.
T Consensus 67 ~~~~~--~~-~~~~--~~iPvV~~~~ 87 (280)
T 3gyb_A 67 AQDIP--DF-TVPD--SLPPFVIAGT 87 (280)
T ss_dssp ESCC-------------CCCEEEESC
T ss_pred cCCCC--hh-hHhh--cCCCEEEECC
Confidence 33321 11 1211 6789887544
No 209
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=25.10 E-value=89 Score=31.50 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=37.2
Q ss_pred cccCCCCCCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEc
Q 004092 136 KLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSL 182 (774)
Q Consensus 136 ~~~r~~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~ 182 (774)
+++|+..++++.++|.+.-.--|-......|++.|.++|+.|..+=+
T Consensus 17 ~~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 17 TENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp -----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 46777777888899999888889999999999999999999988753
No 210
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=25.03 E-value=24 Score=30.80 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHhhhhhcccccCcCcchhhhhcCCceEEeccccc
Q 004092 635 HGTWDEVYRSAKRADRAKNDLHERDEGELERTGQPLCIYEPYLG 678 (774)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (774)
..+|+.|.+.+|.|+.+ |++ ++|+--|.-+|.||.+|=.|
T Consensus 62 t~d~~~i~~al~~S~~l--evs--edg~kVRr~~~~~i~~p~~~ 101 (101)
T 2cqk_A 62 TTDPDLILEVLRSSPMV--QVD--EKGEKVRPSHKRCISGPSSG 101 (101)
T ss_dssp CCCHHHHHHHHHHSSSE--EEC--SSSSEEEECCSCCCCSSCCC
T ss_pred cCCHHHHHHHHHhCCcE--EEc--CCCCeeeeCCCCCcCCCCCC
Confidence 45799999999999865 565 46788888899999999665
No 211
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=25.01 E-value=1e+02 Score=31.68 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEecCCCCChHHHH-HHHHHHHHHHcCCeEEEEEcCC
Q 004092 140 FGYRKPQLALVFPDLLIDPQQLQ-MVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 140 ~~~rk~rialV~~~L~~GG~e~~-v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
.-++++||++|.++...++.... ....++.|.+.|++|+++....
T Consensus 18 ~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~ 63 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYA 63 (280)
T ss_dssp ----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred chhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 45678899999999887765544 4556788999999999998744
No 212
>2l0l_A Oxidoreductase THAT catalyzes reoxidation of DSBA disulfide isomerase I; DSBB, membrane protein, organic solvent, folding; NMR {Escherichia coli BW2952} PDB: 2l0m_A
Probab=24.87 E-value=10 Score=24.82 Aligned_cols=9 Identities=44% Similarity=0.681 Sum_probs=7.4
Q ss_pred CceEEeccc
Q 004092 668 QPLCIYEPY 676 (774)
Q Consensus 668 ~~~~~~~~~ 676 (774)
.|+|||+.+
T Consensus 1 ~pLCI~QR~ 9 (27)
T 2l0l_A 1 KKLSIYERV 9 (27)
T ss_dssp CCCSSSSHH
T ss_pred CCchHHHHH
Confidence 489999975
No 213
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=24.85 E-value=2.9e+02 Score=22.72 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=63.7
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc-----CC
Q 004092 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF-----RK 450 (774)
Q Consensus 378 ~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~-----G~ 450 (774)
+++|+... ......++...+..+. .|.......+....+. ..|++++-..... .-|..+++.+.. .+
T Consensus 3 ~ilivdd~--~~~~~~l~~~L~~~~~---~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 3 KVLIVEDN--ELNMKLFHDLLEAQGY---ETLQTREGLSALSIARENKPDLILMDIQLPE-ISGLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTTC---EEEEESCHHHHHHHHHHHCCSEEEEESBCSS-SBHHHHHHHHHHSTTTTTS
T ss_pred EEEEEcCC--HHHHHHHHHHHHHcCc---EEEEeCCHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHHcCccccCC
Confidence 45566522 1233556666665544 3443333344444443 3688877554332 346677777753 57
Q ss_pred CEEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 451 PIIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 451 PVIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|||. |... ...+.+..|..+++..|-+.+++.++|..++..
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp CEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 8765 3322 223445667889999999999999999888754
No 214
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=24.73 E-value=4.7e+02 Score=25.45 Aligned_cols=109 Identities=11% Similarity=0.158 Sum_probs=68.6
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+.... .....+....++.|. .|.......+....+.. .|++++=..... .-|..+++.+. ..+|
T Consensus 130 ~~ILivdd~~--~~~~~l~~~L~~~g~---~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~-~~G~~l~~~ir~~~~~~p 203 (254)
T 2ayx_A 130 MMILVVDDHP--INRRLLADQLGSLGY---QCKTANDGVDALNVLSKNHIDIVLSDVNMPN-MDGYRLTQRIRQLGLTLP 203 (254)
T ss_dssp CEEEEEESSH--HHHHHHHHHHHHHTS---EEEEECCSHHHHHHHHHSCCSEEEEEESSCS-SCCHHHHHHHHHHHCCSC
T ss_pred CEEEEEeCCH--HHHHHHHHHHHHcCC---EEEEECCHHHHHHHHHhCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCc
Confidence 6788888322 123556666666665 35555555555555554 577776433221 24566666553 4788
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..|.++++..|-+.++|.++|..++..
T Consensus 204 iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 204 VIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp EEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHH
Confidence 876 33222 23445678889999999999999999888765
No 215
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=24.56 E-value=3.2e+02 Score=23.06 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=66.3
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+.... .....++...+..|. .|.......+....+.. .|++++-..... .-|..+++.+. .++|
T Consensus 4 ~~Ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ 77 (132)
T 3crn_A 4 KRILIVDDDT--AILDSTKQILEFEGY---EVEIAATAGEGLAKIENEFFNLALFXIKLPD-MEGTELLEKAHKLRPGMK 77 (132)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEECSBCSS-SBHHHHHHHHHHHCTTSE
T ss_pred cEEEEEeCCH--HHHHHHHHHHHHCCc---eEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CchHHHHHHHHhhCCCCc
Confidence 4666776321 223556666665443 35544444455555443 588887544331 34666676664 3577
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|. |.... ..+.+..|..|++..|-+.++|..+|..++..
T Consensus 78 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 78 KIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 765 33332 23445678889999999999999999888765
No 216
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=24.46 E-value=1.7e+02 Score=29.33 Aligned_cols=86 Identities=7% Similarity=0.001 Sum_probs=49.2
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
+.+|+++.+.....-.......+.+.+.+.||++.++...... ... ......+...++|.|++..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~-~~~--------------~~~i~~l~~~~vdgiIi~~ 66 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQ-ENQ--------------IKAVRSFVAQGVDAIFIAP 66 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCH-HHH--------------HHHHHHHHHHTCSEEEECC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCH-HHH--------------HHHHHHHHHcCCCEEEEeC
Confidence 4688999988543334445556777888999999887543211 100 0111223346799998865
Q ss_pred Cch---hHHHHHHHhCCCCCCCEEEEE
Q 004092 224 LEA---KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 224 ~~~---~~~l~~Ll~~~~~~ipvI~ti 247 (774)
... ...+..+. ..++|+|..-
T Consensus 67 ~~~~~~~~~~~~~~---~~~iPvV~~~ 90 (306)
T 2vk2_A 67 VVATGWEPVLKEAK---DAEIPVFLLD 90 (306)
T ss_dssp SSSSSCHHHHHHHH---HTTCCEEEES
T ss_pred CChhhHHHHHHHHH---HCCCCEEEec
Confidence 432 12333332 2468988643
No 217
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=24.38 E-value=5.6e+02 Score=25.90 Aligned_cols=86 Identities=9% Similarity=-0.097 Sum_probs=49.8
Q ss_pred CCeEEEEec--CCCC-ChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEE
Q 004092 144 KPQLALVFP--DLLI-DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (774)
Q Consensus 144 k~rialV~~--~L~~-GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIh 220 (774)
+.+|++|++ ++.- +=...+...+.+.+.+.||++.++...... . . . .. ...+...++|+|+
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~~~~-~-~-~------------~~-l~~l~~~~~dgIi 67 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDA-E-Y-V------------PS-LSAFADENMGLVV 67 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCSGG-G-H-H------------HH-HHHHHHTTCSEEE
T ss_pred CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCCCHH-H-H-H------------HH-HHHHHHcCCCEEE
Confidence 467889987 5554 444555666777888999998877653211 1 0 0 11 1223346799999
Q ss_pred EcCCchhHHHHHHHhCCCCCCCEEEE
Q 004092 221 VNSLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 221 vhs~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
+.+......+..+.. ...++|+|..
T Consensus 68 ~~~~~~~~~~~~~a~-~~p~~p~v~i 92 (318)
T 2fqx_A 68 ACGSFLVEAVIETSA-RFPKQKFLVI 92 (318)
T ss_dssp EESTTTHHHHHHHHH-HCTTSCEEEE
T ss_pred ECChhHHHHHHHHHH-HCCCCEEEEE
Confidence 876543223333332 2456887764
No 218
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.17 E-value=3.1e+02 Score=22.79 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=68.0
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc-----C
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF-----R 449 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~-----G 449 (774)
.+++|+.... .....++...++.|. .|.......+....+.. .|++++-..... .-|..+++.+.. .
T Consensus 4 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 4 QQALIVEDYQ--AAAETFKELLEMLGF---QADYVMSGTDALHAMSTRGYDAVFIDLNLPD-TSGLALVKQLRALPMEKT 77 (127)
T ss_dssp EEEEEECSCH--HHHHHHHHHHHHTTE---EEEEESSHHHHHHHHHHSCCSEEEEESBCSS-SBHHHHHHHHHHSCCSSC
T ss_pred ceEEEEcCCH--HHHHHHHHHHHHcCC---CEEEECCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhhhccCC
Confidence 5777777322 234667777776654 35555555566565553 578877554432 457777777754 4
Q ss_pred CCEEE-cCCccc--ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 450 KPIIA-PDLSNI--RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 450 ~PVIa-td~ggi--~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
+|||. |..... .+.+..|..+++..|-++++|.+++......
T Consensus 78 ~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 78 SKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp CEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 67765 322211 3445566789999999999999999887654
No 219
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=24.06 E-value=2.6e+02 Score=27.90 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=47.4
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCC---eEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGY---AIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~---eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
..|.++ +.+...-....+..+-+.+.+.|| ++.++........... ......+...++|+|++
T Consensus 3 ~~Igvi-~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~-------------~~~~~~l~~~~vDgII~ 68 (295)
T 3lft_A 3 AKIGVL-QFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKV-------------ATMSKQLVANGNDLVVG 68 (295)
T ss_dssp EEEEEE-ECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHH-------------HHHHHHHTTSSCSEEEE
T ss_pred eEEEEE-EccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHH-------------HHHHHHHHhcCCCEEEE
Confidence 456666 655544556667778889999999 8766432221111110 11233345678999998
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEE
Q 004092 222 NSLEAKVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 222 hs~~~~~~l~~Ll~~~~~~ipvI~t 246 (774)
...... ..+.. ...++|+|+.
T Consensus 69 ~~~~~~---~~~~~-~~~~iPvV~~ 89 (295)
T 3lft_A 69 IATPAA---QGLAS-ATKDLPVIMA 89 (295)
T ss_dssp ESHHHH---HHHHH-HCSSSCEEEE
T ss_pred CCcHHH---HHHHH-cCCCCCEEEE
Confidence 754331 11121 2467898875
No 220
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=24.06 E-value=2.3e+02 Score=29.16 Aligned_cols=81 Identities=6% Similarity=0.073 Sum_probs=50.3
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHH--cCCeEEEEEcCCCcchhhhhhcCccEEEcccc--------hhHHHH
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALRE--IGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKASF 210 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~--~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~--------~~l~~~ 210 (774)
.-+|+|+++..... | .-+..|...... ...+|..+...........+..|+|+..++.. ..+...
T Consensus 87 ~~~~~ri~vl~Sg~---g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~ 161 (286)
T 3n0v_A 87 PNHRPKVVIMVSKA---D--HCLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQV 161 (286)
T ss_dssp TTCCCEEEEEESSC---C--HHHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCBTTBHHHHHHHHHHH
T ss_pred CCCCcEEEEEEeCC---C--CCHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHH
Confidence 44577887766532 3 234445544443 24577666655555555667889998876532 134556
Q ss_pred hhhcCccEEEEcCCch
Q 004092 211 VNWLNYDGILVNSLEA 226 (774)
Q Consensus 211 i~~~~~DIIhvhs~~~ 226 (774)
++..++|+|++-....
T Consensus 162 l~~~~~Dlivla~y~~ 177 (286)
T 3n0v_A 162 IEETGAELVILARYMQ 177 (286)
T ss_dssp HHHHTCSEEEESSCCS
T ss_pred HHhcCCCEEEeccccc
Confidence 7788999999877643
No 221
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=24.03 E-value=4.7e+02 Score=24.85 Aligned_cols=109 Identities=9% Similarity=0.167 Sum_probs=67.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHc--CCCE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCF--RKPI 452 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~--G~PV 452 (774)
.+++|+.... .....+....+..+. .|.......+....+. ..|++++-..... .-|..+++.+.. .+||
T Consensus 6 ~~ILivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~dlvilD~~l~~-~~g~~~~~~lr~~~~~~i 79 (238)
T 2gwr_A 6 QRILVVDDDA--SLAEMLTIVLRGEGF---DTAVIGDGTQALTAVRELRPDLVLLDLMLPG-MNGIDVCRVLRADSGVPI 79 (238)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEECCGGGHHHHHHHHCCSEEEEESSCSS-SCHHHHHHHHHTTCCCCE
T ss_pred CeEEEEeCCH--HHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhCCCCcE
Confidence 4677776321 233556666665444 3555554555555554 3688877554332 346677777653 6787
Q ss_pred EE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 453 IA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 453 Ia-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
|. |... ...+.+..|..|++..|-++++|..+|..++..
T Consensus 80 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 80 VMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 65 3222 234455678889999999999999998877755
No 222
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.90 E-value=3e+02 Score=27.82 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=50.7
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|.++++++...-....+..+.+.+.+.||++.++...... ... ......+...++|.|++.
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~--------------~~~~~~l~~~~vdgiI~~ 123 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQ-DKE--------------LHLLNNMLGKQVDGIIFM 123 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHH-HHH--------------HHHHHHTSCCSSCCEEEC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCh-HHH--------------HHHHHHHHhCCCcEEEEe
Confidence 45789999998766556667777888889999999887543211 000 011222334679988886
Q ss_pred CCchh-HHHHHHHhCCCCCCCEEEEE
Q 004092 223 SLEAK-VVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 223 s~~~~-~~l~~Ll~~~~~~ipvI~ti 247 (774)
..... ..+.. + ...++|+|..-
T Consensus 124 ~~~~~~~~~~~-l--~~~~iPvV~~~ 146 (332)
T 2hsg_A 124 SGNVTEEHVEE-L--KKSPVPVVLAA 146 (332)
T ss_dssp CSSCCHHHHHH-H--TTSSSCEEEES
T ss_pred cCCCCHHHHHH-H--HhCCCCEEEEc
Confidence 54321 22222 2 23578988653
No 223
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=23.79 E-value=1.3e+02 Score=31.43 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=55.6
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcC-CCc-----------chhhhhhcCccEEEcccch--hHH
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLE-DGR-----------AHEVWRNIGVPVAILQTGR--EKA 208 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~-~~~-----------~~~~~~~~gi~i~~l~~~~--~l~ 208 (774)
|++||+|.-.+ .......+.|.+.||+|..+... +.+ ........++++......+ .+.
T Consensus 1 ~~mrivf~Gtp-------~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 1 MSLKIVFAGTP-------QFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCCEEEEEECS-------GGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CCcEEEEECCC-------HHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 56777776543 22334457777889998655442 221 1234466788876543322 455
Q ss_pred HHhhhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCch
Q 004092 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT 251 (774)
Q Consensus 209 ~~i~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~~ 251 (774)
..++..++|+|++-..... +-..++..... -++.+|...
T Consensus 74 ~~l~~~~~Dliv~~~~~~i-lp~~il~~~~~---g~iNiHpSl 112 (314)
T 3tqq_A 74 EKLIAMNADVMVVVAYGLI-LPKKALNAFRL---GCVNVHASL 112 (314)
T ss_dssp HHHHTTCCSEEEEESCCSC-CCHHHHTSSTT---CEEEEESSC
T ss_pred HHHHhcCCCEEEEcCcccc-cCHHHHhhCcC---CEEEecCcc
Confidence 6678899999998766441 22333432111 267899643
No 224
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=23.66 E-value=94 Score=32.21 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=29.6
Q ss_pred ccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEEc
Q 004092 415 GDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (774)
Q Consensus 415 ~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIat 455 (774)
.++.+++. ..|+++..+... .-.-.+.+|+.+|++|++-
T Consensus 57 ~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~aGk~Vl~E 97 (329)
T 3evn_A 57 DKLEDMLADESIDVIYVATINQ--DHYKVAKAALLAGKHVLVE 97 (329)
T ss_dssp SCHHHHHTCTTCCEEEECSCGG--GHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHhcCCCCCEEEECCCcH--HHHHHHHHHHHCCCeEEEc
Confidence 57788888 789998876544 2344677899999999873
No 225
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=23.49 E-value=2.2e+02 Score=29.08 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=53.1
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++++...-....+..+.+.+.+.||++.++.... ... . ......+...++|.|++.
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~-~--------------~~~~~~l~~~~vdGiIi~ 126 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQA-Q--------------DVVMESLISIQAAGIIHV 126 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHH-H--------------HHHHHHHHHHTCSEEEEC
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHH-H--------------HHHHHHHHhCCCCEEEEc
Confidence 456799999987765666777788888999999999887543 211 1 111233445689999987
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
.. +......++|+|..-.
T Consensus 127 ~~--------~~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 127 PV--------VGSIAPEGIPMVQLTR 144 (333)
T ss_dssp CC--------TTCCC-CCSCEEEECC
T ss_pred ch--------HHHHhhCCCCEEEECc
Confidence 65 1112345789886543
No 226
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=23.27 E-value=2.8e+02 Score=27.36 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=47.1
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEE-EcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVY-SLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~-t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++ ........ .......+...++|.|++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~vdgiI~ 71 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEE---------------QKHALLTAIERPVMGILL 71 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------------------CHHHHHHSSCCSEEEE
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHH---------------HHHHHHHHHhcCCCEEEE
Confidence 45679999998766666667777888889999999876 43221100 001122233468999887
Q ss_pred cCCchh-HHHHHHHhCCCCCCCEEEE
Q 004092 222 NSLEAK-VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 222 hs~~~~-~~l~~Ll~~~~~~ipvI~t 246 (774)
...... ..+.. +. ..++|+|..
T Consensus 72 ~~~~~~~~~~~~-l~--~~~iPvV~~ 94 (290)
T 3clk_A 72 LSIALTDDNLQL-LQ--SSDVPYCFL 94 (290)
T ss_dssp ESCC----CHHH-HH--CC--CEEEE
T ss_pred ecccCCHHHHHH-HH--hCCCCEEEE
Confidence 654321 12222 22 356898764
No 227
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=23.18 E-value=29 Score=21.60 Aligned_cols=11 Identities=55% Similarity=0.911 Sum_probs=9.2
Q ss_pred hhhhhhhhhhh
Q 004092 33 RNRSRFSRFLF 43 (774)
Q Consensus 33 ~~~~~~~~~~~ 43 (774)
..|||..||||
T Consensus 4 slrsrwgrfll 14 (26)
T 2lkq_A 4 SLRSRWGRFLL 14 (26)
T ss_dssp TTTTHHHHHTH
T ss_pred hHHHHHHHHHH
Confidence 56899999996
No 228
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=23.14 E-value=1.3e+02 Score=28.33 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=33.3
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
.+++++|..+ .|-.+..+..+++.+.+.|++|.++...+
T Consensus 4 mmkilii~~S--~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 4 KPNILVLFYG--YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CCEEEEEECC--SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CcEEEEEEeC--ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 3588888888 77888888999999999999999988755
No 229
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=22.80 E-value=1.9e+02 Score=28.25 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=49.3
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 2 ~s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgii~~ 66 (275)
T 3d8u_A 2 NAYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQ-E--------------EKLLSTFLESRPAGVVLF 66 (275)
T ss_dssp --CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHH-H--------------HHHHHHHHTSCCCCEEEE
T ss_pred CceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHH-H--------------HHHHHHHHhcCCCEEEEe
Confidence 3467899998875444555667777888899999887754332110 0 011222334678987776
Q ss_pred CCch-hHHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEA-KVVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~-~~~l~~Ll~~~~~~ipvI~t 246 (774)
.... ...+..+. ..++|+|..
T Consensus 67 ~~~~~~~~~~~l~---~~~iPvV~~ 88 (275)
T 3d8u_A 67 GSEHSQRTHQLLE---ASNTPVLEI 88 (275)
T ss_dssp SSCCCHHHHHHHH---HHTCCEEEE
T ss_pred CCCCCHHHHHHHH---hCCCCEEEE
Confidence 5432 22333332 235898764
No 230
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=22.74 E-value=2.4e+02 Score=27.45 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=54.7
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHc--CCeEEEEEcCC--CcchhhhhhcCccEEEcccch---------hHHHHh
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREI--GYAIQVYSLED--GRAHEVWRNIGVPVAILQTGR---------EKASFV 211 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~--G~eV~V~t~~~--~~~~~~~~~~gi~i~~l~~~~---------~l~~~i 211 (774)
+|+++++.+- ...+..+.+.+.+. +++|..+.... .+.....+..|+++..+.... .+...+
T Consensus 4 ~ki~vl~sG~-----g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l 78 (212)
T 3av3_A 4 KRLAVFASGS-----GTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILREL 78 (212)
T ss_dssp EEEEEECCSS-----CHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred cEEEEEEECC-----cHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHH
Confidence 4676665432 12456677777766 67775444432 223344577899987644321 345567
Q ss_pred hhcCccEEEEcCCchhHHHHHHHhCCCCCCCEEEEEcCc
Q 004092 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG 250 (774)
Q Consensus 212 ~~~~~DIIhvhs~~~~~~l~~Ll~~~~~~ipvI~tiHg~ 250 (774)
+..++|+|++-..... +-..++.... --++.+|..
T Consensus 79 ~~~~~Dliv~a~y~~i-l~~~~l~~~~---~~~iNiHpS 113 (212)
T 3av3_A 79 KGRQIDWIALAGYMRL-IGPTLLSAYE---GKIVNIHPS 113 (212)
T ss_dssp HHTTCCEEEESSCCSC-CCHHHHHHTT---TCEEEEESS
T ss_pred HhcCCCEEEEchhhhh-CCHHHHhhhc---CCEEEEecC
Confidence 7889999998775431 2222332211 126788853
No 231
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=22.70 E-value=2.4e+02 Score=30.71 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=33.1
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCC
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLED 184 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~-G~eV~V~t~~~ 184 (774)
.+++++++++ ....|=.+.+..||..|.+. |+.|.++....
T Consensus 98 ~~~~vI~ivG-~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAG-LQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEEC-STTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4577777775 45557788999999999999 99999998765
No 232
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.63 E-value=3.7e+02 Score=26.25 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCCeEEEEecC--CCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEE
Q 004092 143 RKPQLALVFPD--LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (774)
Q Consensus 143 rk~rialV~~~--L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIh 220 (774)
++.+|.++++. +...-....+..+...+.+.||++.++........ . ......+...++|.|+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgii 82 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEE-E--------------RQAIQYLLDLRCDAIM 82 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHH-H--------------HHHHHHHHHTTCSEEE
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHhcCCCEEE
Confidence 45689999987 65444555677777888899999887654321110 0 0111222346899888
Q ss_pred EcCCch-hHHHHHHHhCCCCCCCEEEEE
Q 004092 221 VNSLEA-KVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 221 vhs~~~-~~~l~~Ll~~~~~~ipvI~ti 247 (774)
+..... ...+..+.. ..++|+|..-
T Consensus 83 ~~~~~~~~~~~~~l~~--~~~iPvV~~~ 108 (296)
T 3brq_A 83 IYPRFLSVDEIDDIID--AHSQPIMVLN 108 (296)
T ss_dssp EECSSSCHHHHHHHHH--TCSSCEEEES
T ss_pred EecCCCChHHHHHHHh--cCCCCEEEEc
Confidence 765432 123333322 1468988653
No 233
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.38 E-value=4.9e+02 Score=24.41 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH---cCCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC---FRKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA---~G~P 451 (774)
.+++|+.... .....+....+..+. .|.......+....+.. .|++++-..... .-|..+++.+. ..+|
T Consensus 8 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~ 81 (233)
T 1ys7_A 8 PRVLVVDDDS--DVLASLERGLRLSGF---EVATAVDGAEALRSATENRPDAIVLDINMPV-LDGVSVVTALRAMDNDVP 81 (233)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEESSHHHHHHHHHHSCCSEEEEESSCSS-SCHHHHHHHHHHTTCCCC
T ss_pred CeEEEEeCCH--HHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCC
Confidence 5777777322 123556666665443 35444444455555443 588877544332 34667777764 3678
Q ss_pred EEE-cCCc---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~g---gi~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |... ...+.+..|..|++..|-++++|..+|..++..
T Consensus 82 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp EEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 765 3222 234556678889999999999999988777654
No 234
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=22.27 E-value=1.5e+02 Score=30.70 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=44.8
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
+.++-+..... +..++++++++... + ..++.+++. .+|+++..+... .-.-.+.+|+..|++|++
T Consensus 27 ~~l~av~d~~~----~~~~~~~~~~~~~~--~-----~~~~~~ll~~~~~D~V~i~tp~~--~h~~~~~~al~~gk~v~~ 93 (344)
T 3ezy_A 27 AILYAISDVRE----DRLREMKEKLGVEK--A-----YKDPHELIEDPNVDAVLVCSSTN--THSELVIACAKAKKHVFC 93 (344)
T ss_dssp EEEEEEECSCH----HHHHHHHHHHTCSE--E-----ESSHHHHHHCTTCCEEEECSCGG--GHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEECCCH----HHHHHHHHHhCCCc--e-----eCCHHHHhcCCCCCEEEEcCCCc--chHHHHHHHHhcCCeEEE
Confidence 77765554333 55667777766542 1 257778888 799999877544 234466789999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 94 E 94 (344)
T 3ezy_A 94 E 94 (344)
T ss_dssp E
T ss_pred E
Confidence 4
No 235
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=22.25 E-value=1.5e+02 Score=27.75 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=32.2
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHH-cCCeEEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALRE-IGYAIQVYSLED 184 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~-~G~eV~V~t~~~ 184 (774)
+++++|..+ ..|-.+..+..+++.+.+ .|++|.++...+
T Consensus 5 ~kiliiy~S-~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~ 44 (188)
T 2ark_A 5 GKVLVIYDT-RTGNTKKMAELVAEGARSLEGTEVRLKHVDE 44 (188)
T ss_dssp EEEEEEECC-SSSHHHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred CEEEEEEEC-CCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh
Confidence 578888887 467788888999999998 899999887654
No 236
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.16 E-value=3.6e+02 Score=27.26 Aligned_cols=87 Identities=9% Similarity=0.067 Sum_probs=51.6
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+..+|.++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI~~ 126 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEK-E--------------EKVLETFLSKQVDGIVYM 126 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH-H--------------HHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHH-H--------------HHHHHHHHhCCCCEEEEe
Confidence 4567999999865544555667777888899999988754332110 0 011222335689998887
Q ss_pred CCc-hhHHHHHHHhCCCCCCCEEEEE
Q 004092 223 SLE-AKVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 223 s~~-~~~~l~~Ll~~~~~~ipvI~ti 247 (774)
... ....+..+. ..++|+|..-
T Consensus 127 ~~~~~~~~~~~l~---~~~iPvV~~~ 149 (332)
T 2o20_A 127 GSSLDEKIRTSLK---NSRTPVVLVG 149 (332)
T ss_dssp SSCCCHHHHHHHH---HHCCCEEEES
T ss_pred CCCCCHHHHHHHH---hCCCCEEEEc
Confidence 642 222333332 2358987653
No 237
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=22.15 E-value=2.3e+02 Score=29.00 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=46.6
Q ss_pred cceeEeechhhhHHh-hhcccccccccccccccc-CCCCCCCeEEEEecCCC-----------CChHHHHHHHHHHHHHH
Q 004092 106 GEEVTFLPLKLMEKF-QSEDKDVNLTSVFHRKLH-RFGYRKPQLALVFPDLL-----------IDPQQLQMVTIAIALRE 172 (774)
Q Consensus 106 g~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~-r~~~rk~rialV~~~L~-----------~GG~e~~v~~Lak~L~~ 172 (774)
.+.=.|-||..+.+- ..+. .+++.+ ... .+.. .++|++|..+-. .|-...-+......|.+
T Consensus 14 ~~~~~~~p~~~~~~~~~~~~--~~~~~~---~~~~~~~g-~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ 87 (291)
T 1n57_A 14 AEDNAFFPSEYSLSQYTSPV--SDLDGV---DYPKPYRG-KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHA 87 (291)
T ss_dssp TSTTEEECCHHHHHHHCCSS--CCCCCC---CCSSCCCS-SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHH
T ss_pred hhcCCcCCChhhHHHhcCCc--cCcccC---cCccccCC-CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHH
Confidence 344457788887766 3333 334433 212 2222 248988888632 24445566777888999
Q ss_pred cCCeEEEEEcCCCc
Q 004092 173 IGYAIQVYSLEDGR 186 (774)
Q Consensus 173 ~G~eV~V~t~~~~~ 186 (774)
.||+|.+++...++
T Consensus 88 ag~~v~i~S~~g~~ 101 (291)
T 1n57_A 88 AGFEFEVATISGLM 101 (291)
T ss_dssp TTCCEEEEESSSCC
T ss_pred CCCEEEEEeCCCCc
Confidence 99999999987654
No 238
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.96 E-value=3.9e+02 Score=27.29 Aligned_cols=88 Identities=10% Similarity=0.115 Sum_probs=49.2
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|.++++++...-....+..+.+.+.+.||++.+............ .....+...++|.|++.
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~--------------~~l~~l~~~~vdGiIi~ 125 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACK--------------TAVHNLLAQRVSGLIIN 125 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH--------------HHHHHHHTTTCSCEEEE
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHH--------------HHHHHHHHCCCCEEEEe
Confidence 3467899998876544455666777888899999988765432111000 11122334679988876
Q ss_pred CCchh-HHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAK-VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~-~~l~~Ll~~~~~~ipvI~t 246 (774)
.+... ......+. ..++|+|+.
T Consensus 126 ~~~~~~~~~~~~~~--~~~iPvV~i 148 (349)
T 1jye_A 126 YPLDDQDAIAVEAA--CTNVPALFL 148 (349)
T ss_dssp SCCCHHHHHHHHHH--TTTSCEEES
T ss_pred cCCCChhHHHHHHh--hCCCCEEEE
Confidence 43321 12211121 356898764
No 239
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=21.77 E-value=2.9e+02 Score=28.46 Aligned_cols=81 Identities=6% Similarity=0.063 Sum_probs=50.4
Q ss_pred CCCCCeEEEEecCCCCChHHHHHHHHHHHHHH--cCCeEEEEEcCCCcchhhhhhcCccEEEcccc--------hhHHHH
Q 004092 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALRE--IGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKASF 210 (774)
Q Consensus 141 ~~rk~rialV~~~L~~GG~e~~v~~Lak~L~~--~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~--------~~l~~~ 210 (774)
.-+++|+++....- |. -+..|...... ...+|..+...........+..|+|+..++.. ..+...
T Consensus 92 ~~~~~ri~vl~Sg~---g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~ 166 (292)
T 3lou_A 92 VAARPKVLIMVSKL---EH--CLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDV 166 (292)
T ss_dssp TTSCCEEEEEECSC---CH--HHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEEcCC---Cc--CHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHH
Confidence 34577887766532 32 34445554443 34577666665555555677889998876531 134556
Q ss_pred hhhcCccEEEEcCCch
Q 004092 211 VNWLNYDGILVNSLEA 226 (774)
Q Consensus 211 i~~~~~DIIhvhs~~~ 226 (774)
++..++|+|++-....
T Consensus 167 l~~~~~Dlivla~y~~ 182 (292)
T 3lou_A 167 FETSGAELVILARYMQ 182 (292)
T ss_dssp HHHHTCSEEEESSCCS
T ss_pred HHHhCCCEEEecCchh
Confidence 7788999999877643
No 240
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=21.64 E-value=1.6e+02 Score=27.02 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=33.6
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
..+++++..+. .|..+.++..+++.|.+.|++|.++....
T Consensus 4 ~~kv~IvY~S~-~GnT~~iA~~ia~~l~~~g~~v~~~~~~~ 43 (159)
T 3fni_A 4 ETSIGVFYVSE-YGYSDRLAQAIINGITKTGVGVDVVDLGA 43 (159)
T ss_dssp CCEEEEEECTT-STTHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEEEECC-ChHHHHHHHHHHHHHHHCCCeEEEEECcC
Confidence 45677777776 59999999999999999999999887654
No 241
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=21.60 E-value=1.6e+02 Score=28.07 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=33.9
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
.+++++|..+. .|-.+..+..+++.+.+.|++|.++...+
T Consensus 6 mmkilii~~S~-~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 6 PVKLAIVFYSS-TGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCeEEEEEECC-CChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 46888888887 67788888899999999999999998765
No 242
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=21.08 E-value=1.4e+02 Score=31.48 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=41.0
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHHc--CEEEEcCccCcCCccHHHHHHHHcCCCEEE
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTA--DVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~aa--DI~V~PS~~E~qGfp~~llEAMA~G~PVIa 454 (774)
+.++-+..... +..++++++++... . ..++.+++... |+++..+... .-.-.+.+|+.+|++|++
T Consensus 31 ~~l~av~d~~~----~~~~~~a~~~~~~~----~---~~~~~~ll~~~~vD~V~i~tp~~--~H~~~~~~al~aGkhVl~ 97 (359)
T 3m2t_A 31 IRIVAACDSDL----ERARRVHRFISDIP----V---LDNVPAMLNQVPLDAVVMAGPPQ--LHFEMGLLAMSKGVNVFV 97 (359)
T ss_dssp EEEEEEECSSH----HHHGGGGGTSCSCC----E---ESSHHHHHHHSCCSEEEECSCHH--HHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEEcCCH----HHHHHHHHhcCCCc----c---cCCHHHHhcCCCCCEEEEcCCcH--HHHHHHHHHHHCCCeEEE
Confidence 77775554332 44455555433221 1 25778888865 8888776443 234467789999999987
Q ss_pred c
Q 004092 455 P 455 (774)
Q Consensus 455 t 455 (774)
-
T Consensus 98 E 98 (359)
T 3m2t_A 98 E 98 (359)
T ss_dssp C
T ss_pred E
Confidence 3
No 243
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=21.07 E-value=2e+02 Score=29.08 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=47.5
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcC
Q 004092 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (774)
Q Consensus 144 k~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs 223 (774)
..+|.++.+.....-.......+.+.+.+.|+++.+............ ..+..++ ..++|.|++..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~-------------~~i~~li-~~~vdgiii~~ 68 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQV-------------QLVNNFV-NQGYDAIIVSA 68 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHH-------------HHHHHHH-HTTCSEEEECC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHH-------------HHHHHHH-HcCCCEEEEeC
Confidence 357889988765444445556666778889999877532221111110 1112223 45799988865
Q ss_pred Cchh---HHHHHHHhCCCCCCCEEEE
Q 004092 224 LEAK---VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 224 ~~~~---~~l~~Ll~~~~~~ipvI~t 246 (774)
.... ..+..+. ..++|+|..
T Consensus 69 ~~~~~~~~~~~~a~---~~gipvV~~ 91 (316)
T 1tjy_A 69 VSPDGLCPALKRAM---QRGVKILTW 91 (316)
T ss_dssp SSSSTTHHHHHHHH---HTTCEEEEE
T ss_pred CCHHHHHHHHHHHH---HCcCEEEEe
Confidence 4332 2222222 346898865
No 244
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=21.00 E-value=2.1e+02 Score=25.23 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccch-hHHHHhhhcCccEEEEcCCchhHH--HHHHHhCCC
Q 004092 162 QMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR-EKASFVNWLNYDGILVNSLEAKVV--ISNIMQEPF 238 (774)
Q Consensus 162 ~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~-~l~~~i~~~~~DIIhvhs~~~~~~--l~~Ll~~~~ 238 (774)
.-..+++.|.+.|++|.++....... ......++.+..-.... .......-.+.|+|++..+..... +...+....
T Consensus 18 ~G~~la~~L~~~g~~v~vid~~~~~~-~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~ 96 (140)
T 3fwz_A 18 VGSLLGEKLLASDIPLVVIETSRTRV-DELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKN 96 (140)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHH-HHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHH-HHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHC
Confidence 45678899999999999998654322 23334565544333222 111222335789999877654222 222233334
Q ss_pred CCCCEEEEEcC
Q 004092 239 KSLPLVWTIHE 249 (774)
Q Consensus 239 ~~ipvI~tiHg 249 (774)
..+++|...++
T Consensus 97 ~~~~iiar~~~ 107 (140)
T 3fwz_A 97 PDIEIIARAHY 107 (140)
T ss_dssp SSSEEEEEESS
T ss_pred CCCeEEEEECC
Confidence 56778877775
No 245
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.94 E-value=3.9e+02 Score=26.27 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=51.6
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|.+++ ++...-....+..+.+.+.+.||++.++....... . ......+...++|.|++.
T Consensus 11 ~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~--------------~~~~~~l~~~~vdgiIi~ 73 (289)
T 3k9c_A 11 SSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRA--E--------------KVAVQALMRERCEAAILL 73 (289)
T ss_dssp --CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBC--H--------------HHHHHHHTTTTEEEEEEE
T ss_pred CCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHH--H--------------HHHHHHHHhCCCCEEEEE
Confidence 456788888 66555556677778888999999999887654221 1 111222345689998887
Q ss_pred CCchhHHHHHHHhCCCCCCCEEEEEc
Q 004092 223 SLEAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 223 s~~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
...........+. . ++|+|+.-.
T Consensus 74 ~~~~~~~~~~~~~--~-~iPvV~i~~ 96 (289)
T 3k9c_A 74 GTRFDTDELGALA--D-RVPALVVAR 96 (289)
T ss_dssp TCCCCHHHHHHHH--T-TSCEEEESS
T ss_pred CCCCCHHHHHHHH--c-CCCEEEEcC
Confidence 6433222222222 2 789886544
No 246
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=20.75 E-value=4.5e+02 Score=23.45 Aligned_cols=93 Identities=10% Similarity=0.093 Sum_probs=50.5
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvhs~ 224 (774)
+.+++.++.+...-....+..++++|.+.++.+.+++..... . ...-.+........ ..++.....|++++|..
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~--~---~~~~~v~~~~~~~~-~~~l~~~~ad~~I~~~G 95 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKP--D---TLGLNTRLYKWIPQ-NDLLGHPKTRAFITHGG 95 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCC--T---TCCTTEEEESSCCH-HHHHTSTTEEEEEECCC
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCc--c---cCCCcEEEecCCCH-HHHhcCCCcCEEEEcCC
Confidence 445555665543334566778888888888877666543311 1 11112333333222 23333367899998765
Q ss_pred chhHHHHHHHhCCCCCCCEEEEEc
Q 004092 225 EAKVVISNIMQEPFKSLPLVWTIH 248 (774)
Q Consensus 225 ~~~~~l~~Ll~~~~~~ipvI~tiH 248 (774)
.. ...-.+. .++|+|.+-.
T Consensus 96 ~~-t~~Ea~~----~G~P~i~~p~ 114 (170)
T 2o6l_A 96 AN-GIYEAIY----HGIPMVGIPL 114 (170)
T ss_dssp HH-HHHHHHH----HTCCEEECCC
T ss_pred cc-HHHHHHH----cCCCEEeccc
Confidence 43 2333333 3489887654
No 247
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=20.71 E-value=3.4e+02 Score=27.85 Aligned_cols=86 Identities=15% Similarity=0.248 Sum_probs=48.6
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEEc
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhvh 222 (774)
+...|+++++++...-....+..+.+.+.+.||++.++........ . ......+...++|.|++.
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiI~~ 129 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSNEDATT-M--------------SGSLEFLTSHGVDGIICV 129 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHH-H--------------HHHHHHHHHTTCSCEEEC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH-H--------------HHHHHHHHhCCCCEEEEe
Confidence 3467999999875444455666777888899999988764321110 0 011223345679988886
Q ss_pred CCchh-HHHHHHHhCCCCCCCEEEE
Q 004092 223 SLEAK-VVISNIMQEPFKSLPLVWT 246 (774)
Q Consensus 223 s~~~~-~~l~~Ll~~~~~~ipvI~t 246 (774)
..... ..+..+. ..++|+|..
T Consensus 130 ~~~~~~~~~~~l~---~~~iPvV~i 151 (348)
T 3bil_A 130 PNEECANQLEDLQ---KQGMPVVLV 151 (348)
T ss_dssp CCGGGHHHHHHHH---HC-CCEEEE
T ss_pred CCCCChHHHHHHH---hCCCCEEEE
Confidence 64432 2232322 246898764
No 248
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=20.57 E-value=2.4e+02 Score=27.88 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEE
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYS 181 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t 181 (774)
..|.++++++...-....+..+.+.+.+.||++.+..
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~ 38 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFA 38 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 4688888887654455566677788889999998876
No 249
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=20.55 E-value=1.6e+02 Score=26.12 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=31.1
Q ss_pred eEEEEecCCCCC-hHHHHHHHHHHHHHHcCCeE-EEEEcCCCc
Q 004092 146 QLALVFPDLLID-PQQLQMVTIAIALREIGYAI-QVYSLEDGR 186 (774)
Q Consensus 146 rialV~~~L~~G-G~e~~v~~Lak~L~~~G~eV-~V~t~~~~~ 186 (774)
++++++.....| -.....+.++..+.+.||+| .|+-..++-
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~dGV 44 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGV 44 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEechHH
Confidence 567777665554 44567899999999999999 888876643
No 250
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=20.38 E-value=1.5e+02 Score=28.15 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=33.1
Q ss_pred CeEEEEecCCC------CChHHHHHHHHHHHHHHcCCeEEEEEcC
Q 004092 145 PQLALVFPDLL------IDPQQLQMVTIAIALREIGYAIQVYSLE 183 (774)
Q Consensus 145 ~rialV~~~L~------~GG~e~~v~~Lak~L~~~G~eV~V~t~~ 183 (774)
.++++|+++-. ..|.+.-+..|++.|.++||+|.+...-
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dl 87 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNL 87 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 68999988753 4689999999999999999999987643
No 251
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=20.37 E-value=1.5e+02 Score=26.46 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=31.7
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC
Q 004092 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (774)
Q Consensus 145 ~rialV~~~L~~GG~e~~v~~Lak~L~~~G~eV~V~t~~~ 184 (774)
++++++..+. .|..+..+..+++.|.+.|++|.++...+
T Consensus 2 ~ki~I~y~S~-tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 2 SKVLIVFGSS-TGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp CEEEEEEECS-SSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 3566666664 68889999999999999999999987654
No 252
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=20.22 E-value=3.6e+02 Score=22.05 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=67.6
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHH--HcCEEEEcCccC-cCCccHHHHHHHH-----c
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLE-EQTFPEILVKALC-----F 448 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~--aaDI~V~PS~~E-~qGfp~~llEAMA-----~ 448 (774)
.+++|+.... .....+....++.|. .|.......+....+. ..|++++-.... . .-|..+++.+. .
T Consensus 6 ~~ilivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~-~~g~~~~~~l~~~~~~~ 79 (127)
T 2gkg_A 6 KKILIVESDT--ALSATLRSALEGRGF---TVDETTDGKGSVEQIRRDRPDLVVLAVDLSAG-QNGYLICGKLKKDDDLK 79 (127)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHHTC---EEEEECCHHHHHHHHHHHCCSEEEEESBCGGG-CBHHHHHHHHHHSTTTT
T ss_pred CeEEEEeCCH--HHHHHHHHHHHhcCc---eEEEecCHHHHHHHHHhcCCCEEEEeCCCCCC-CCHHHHHHHHhcCcccc
Confidence 3667776321 233556666665554 3554444445555444 368877654332 2 35677777775 3
Q ss_pred CCCEEEcCCccc----ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 449 RKPIIAPDLSNI----RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 449 G~PVIatd~ggi----~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
.+|||.. ...- .+.+..|..+++..|-+.+++.+.|..++..
T Consensus 80 ~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 80 NVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp TSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 5788876 3222 2345677789999999999999999988764
No 253
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.19 E-value=2.4e+02 Score=25.81 Aligned_cols=109 Identities=11% Similarity=0.198 Sum_probs=68.0
Q ss_pred eEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccCcccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHHc---CCC
Q 004092 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RKP 451 (774)
Q Consensus 377 v~LvIvGG~~~e~Y~~~L~~la~~lgL~~~~V~flG~~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA~---G~P 451 (774)
.+++|+.... .....+....+..|. .|.......+....+.. .|++++-..... .-|..+++.+.. .+|
T Consensus 8 ~~iLivdd~~--~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ 81 (184)
T 3rqi_A 8 KNFLVIDDNE--VFAGTLARGLERRGY---AVRQAHNKDEALKLAGAEKFEFITVXLHLGN-DSGLSLIAPLCDLQPDAR 81 (184)
T ss_dssp CEEEEECSCH--HHHHHHHHHHHHTTC---EEEEECSHHHHHHHHTTSCCSEEEECSEETT-EESHHHHHHHHHHCTTCE
T ss_pred CeEEEEcCCH--HHHHHHHHHHHHCCC---EEEEeCCHHHHHHHHhhCCCCEEEEeccCCC-ccHHHHHHHHHhcCCCCC
Confidence 5677776321 223556666665543 35444444555555543 578776543332 456777776643 677
Q ss_pred EEE-cCCcc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 004092 452 IIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (774)
Q Consensus 452 VIa-td~gg---i~EiV~dg~~G~Lv~~~d~e~La~aI~~Ll~d 491 (774)
||. |.... ..+.+..|..+++..|-++++|..+|..++..
T Consensus 82 ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 82 ILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASE 125 (184)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHH
T ss_pred EEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHH
Confidence 765 43332 23455678889999999999999999877765
No 254
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=20.17 E-value=2e+02 Score=32.44 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=59.0
Q ss_pred HHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCC-----CccEEEccC---------------
Q 004092 355 LILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYP-----LGVVKHMAA--------------- 413 (774)
Q Consensus 355 lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~-----~~~V~flG~--------------- 413 (774)
-|+.|++...++..+ .++++.| |.-.-...+.|.....+.|+. . +|.+...
T Consensus 268 gllnAlki~gk~l~d-------~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~-~i~~~D~~Gli~~~r~~l~~~k 339 (555)
T 1gq2_A 268 GLLAALRITKNRLSD-------HTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIK-RIWMVDSKGLIVKGRASLTPEK 339 (555)
T ss_dssp HHHHHHHHHTSCGGG-------CCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHT-TEEEEETTEECBTTCSSCCTTG
T ss_pred HHHHHHHHhCCChhh-------cEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhC-cEEEEECCCeeeCCCCCchHHH
Confidence 346666666666656 8999999 754311123333333335764 3 5666531
Q ss_pred ---------cccHHHHHHH--cCEEEEcCccCcCCccHHHHHHHH--cCCCEEE
Q 004092 414 ---------EGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALC--FRKPIIA 454 (774)
Q Consensus 414 ---------~~dl~~~l~a--aDI~V~PS~~E~qGfp~~llEAMA--~G~PVIa 454 (774)
..++.+.+.. +|++|=.|.... .|.--++++|+ +..|+|-
T Consensus 340 ~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g-~ft~evv~~Ma~~~~~PIIF 392 (555)
T 1gq2_A 340 EHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGG-AFTQQILQDMAAFNKRPIIF 392 (555)
T ss_dssp GGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTT-CSCHHHHHHHHHHCSSCEEE
T ss_pred HHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCC-CCCHHHHHHHHhcCCCCEEE
Confidence 0247888886 999999886433 68899999999 4778775
No 255
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=20.08 E-value=59 Score=32.04 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHchhhcccCCCCCCCeEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc-Cc-ccHHHHHHHcCEE
Q 004092 351 LEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE-GDVDSVLNTADVV 427 (774)
Q Consensus 351 Kg~~lLLeA~~~L~~~~p~~~~~~~~v~LvIvG-G~~~e~Y~~~L~~la~~lgL~~~~V~flG-~~-~dl~~~l~aaDI~ 427 (774)
|-...|.+|+..+.+-.+ -+++++| .+.. .+.+++.++..|-..-+=.|+| .. +....-+..=|++
T Consensus 51 kT~~~L~~A~~~i~~i~~--------~~iLfVgTk~~~---~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~Pdll 119 (208)
T 1vi6_A 51 KLDERIRVAAKFLSRYEP--------SKILLVAARQYA---HKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVV 119 (208)
T ss_dssp HHHHHHHHHHHHHTTSCG--------GGEEEEECSGGG---HHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEE
T ss_pred HHHHHHHHHHHHHHhcCC--------CEEEEEeCCHHH---HHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEE
Confidence 445556666666654423 4788899 3322 3667777776655321112443 11 1111223456776
Q ss_pred EEcCccCcCCccHHHHHHHHcCCCEEE-cCCccccccc
Q 004092 428 IYGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYV 464 (774)
Q Consensus 428 V~PS~~E~qGfp~~llEAMA~G~PVIa-td~ggi~EiV 464 (774)
+......+ ..++.||.-.|+|||+ .|....++.|
T Consensus 120 iV~Dp~~e---~~ai~EA~~l~IPvIalvDTn~~p~~V 154 (208)
T 1vi6_A 120 FVNDPAID---KQAVSEATAVGIPVVALCDSNNSSADV 154 (208)
T ss_dssp EESCTTTT---HHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred EEECCCcc---hhHHHHHHHhCCCEEEEeCCCCCcccc
Confidence 66554332 6799999999999998 3444445544
No 256
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=20.05 E-value=3.1e+02 Score=27.71 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=46.3
Q ss_pred CCCeEEEEecCCCCChHHHHHHHHHHHHHHc-CCeEEEEEcCCCcchhhhhhcCccEEEcccchhHHHHhhhcCccEEEE
Q 004092 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (774)
Q Consensus 143 rk~rialV~~~L~~GG~e~~v~~Lak~L~~~-G~eV~V~t~~~~~~~~~~~~~gi~i~~l~~~~~l~~~i~~~~~DIIhv 221 (774)
++.+|+++.+. ...-....+..+.+.+.+. ||++.++........ .. ..+. .+...++|.|++
T Consensus 5 ~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~-~~-------------~~i~-~l~~~~vdgiIi 68 (325)
T 2x7x_A 5 PHFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSK-QA-------------EDVH-YFMDEGVDLLII 68 (325)
T ss_dssp -CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHH-HH-------------HHHH-HHHHTTCSEEEE
T ss_pred CCeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHH-HH-------------HHHH-HHHHcCCCEEEE
Confidence 45678999887 2222233444566677777 999988764332111 00 1112 223468999998
Q ss_pred cCCchhHHHHHHHhCCCCCCCEEEEE
Q 004092 222 NSLEAKVVISNIMQEPFKSLPLVWTI 247 (774)
Q Consensus 222 hs~~~~~~l~~Ll~~~~~~ipvI~ti 247 (774)
...........+......++|+|..-
T Consensus 69 ~~~~~~~~~~~~~~~~~~~iPvV~~~ 94 (325)
T 2x7x_A 69 SANEAAPMTPIVEEAYQKGIPVILVD 94 (325)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred eCCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 76544211111111112468988653
Done!