Your job contains 1 sequence.
>004093
MASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIA
KFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRK
AFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVE
QLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYK
EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG
SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ
FIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF
MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTL
KVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINK
KVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATG
ASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICL
QSDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDI
GQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVSGDLSGSTG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004093
(774 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007973 - symbol:CSTF77 species:3702 "Arabidop... 2394 1.5e-248 1
DICTYBASE|DDB_G0286645 - symbol:cstf3 "cleavage stimulati... 1029 1.4e-111 4
UNIPROTKB|E1BGY7 - symbol:CSTF3 "Uncharacterized protein"... 555 2.8e-103 2
UNIPROTKB|Q5F4A0 - symbol:CSTF3 "Uncharacterized protein"... 869 9.0e-90 2
ZFIN|ZDB-GENE-040426-1997 - symbol:cstf3 "cleavage stimul... 872 1.5e-89 2
UNIPROTKB|E2R479 - symbol:CSTF3 "Uncharacterized protein"... 869 6.0e-87 1
UNIPROTKB|Q12996 - symbol:CSTF3 "Cleavage stimulation fac... 869 6.0e-87 1
MGI|MGI:1351825 - symbol:Cstf3 "cleavage stimulation fact... 869 6.0e-87 1
WB|WBGene00006307 - symbol:suf-1 species:6239 "Caenorhabd... 797 2.6e-79 1
RGD|1305901 - symbol:Cstf3 "cleavage stimulation factor, ... 796 3.3e-79 1
FB|FBgn0003559 - symbol:su(f) "suppressor of forked" spec... 513 2.4e-51 3
POMBASE|SPAC6F12.17 - symbol:rna14 "mRNA cleavage and pol... 473 1.3e-42 1
UNIPROTKB|G4N9J4 - symbol:MGG_03265 "mRNA 3'-end-processi... 365 3.4e-42 2
SGD|S000004665 - symbol:RNA14 "Component of the cleavage ... 276 1.5e-35 2
CGD|CAL0005466 - symbol:orf19.1531 species:5476 "Candida ... 322 2.6e-34 2
ASPGD|ASPL0000073973 - symbol:AN4892 species:162425 "Emer... 385 3.4e-31 2
UNIPROTKB|E9PLP8 - symbol:CSTF3 "Cleavage stimulation fac... 242 2.0e-19 1
UNIPROTKB|I3LMS1 - symbol:I3LMS1 "Uncharacterized protein... 232 2.4e-18 1
UNIPROTKB|Q86UA1 - symbol:PRPF39 "Pre-mRNA-processing fac... 163 2.4e-15 2
UNIPROTKB|F1PV57 - symbol:PRPF39 "Uncharacterized protein... 162 3.0e-15 2
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 142 4.0e-15 2
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa... 158 5.0e-15 2
MGI|MGI:104602 - symbol:Prpf39 "PRP39 pre-mRNA processing... 155 6.5e-15 2
UNIPROTKB|F1SI15 - symbol:PRPF39 "Uncharacterized protein... 162 7.8e-15 2
UNIPROTKB|A8E4M9 - symbol:PRPF39 "Uncharacterized protein... 165 3.5e-14 2
ASPGD|ASPL0000046692 - symbol:AN1635 species:162425 "Emer... 199 2.6e-12 1
DICTYBASE|DDB_G0291836 - symbol:DDB_G0291836 "Squamous ce... 173 1.5e-11 2
POMBASE|SPBC4B4.09 - symbol:usp105 "U1 snRNP-associated p... 142 2.5e-11 2
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 175 5.4e-10 1
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 178 6.3e-10 1
UNIPROTKB|D4A0B1 - symbol:D4A0B1 "Uncharacterized protein... 123 7.9e-10 2
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 177 8.7e-10 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 177 1.0e-09 1
UNIPROTKB|G4MRU5 - symbol:MGG_04558 "Pre-mRNA-processing ... 171 2.9e-09 1
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 168 8.0e-09 1
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 168 8.0e-09 1
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 168 8.2e-09 1
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 166 1.4e-08 1
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 165 2.0e-08 1
WB|WBGene00017768 - symbol:F25B4.5 species:6239 "Caenorha... 118 2.3e-08 2
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 163 3.2e-08 1
FB|FBgn0039600 - symbol:CG1646 species:7227 "Drosophila m... 133 3.4e-08 2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 163 3.7e-08 1
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 163 3.7e-08 1
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 154 2.5e-07 1
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 147 5.3e-07 2
DICTYBASE|DDB_G0283307 - symbol:prpf39 "pre-mRNA processi... 157 6.7e-07 2
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 143 7.3e-07 2
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha... 142 1.1e-06 3
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci... 142 1.1e-06 3
TAIR|locus:2135892 - symbol:EMB140 "EMBRYO DEFECTIVE 140"... 149 1.2e-06 1
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 147 1.4e-06 1
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 121 6.9e-05 2
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 121 6.9e-05 2
ZFIN|ZDB-GENE-030616-420 - symbol:prpf39 "PRP39 pre-mRNA ... 132 7.1e-05 1
ASPGD|ASPL0000052140 - symbol:AN0111 species:162425 "Emer... 108 0.00015 2
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 131 0.00026 1
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 126 0.00029 1
POMBASE|SPBC211.02c - symbol:cwf3 "complexed with Cdc5 pr... 124 0.00055 1
ZFIN|ZDB-GENE-030131-2575 - symbol:prpf6 "PRP6 pre-mRNA p... 123 0.00089 1
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 2394 (847.8 bits), Expect = 1.5e-248, P = 1.5e-248
Identities = 458/655 (69%), Positives = 528/655 (80%)
Query: 17 VADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNND 76
+ADKY VE AE LA ALH P+AQA PIYEQLLS++PT+ A+FWKQYVEA MAVNND
Sbjct: 1 MADKYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTS----ARFWKQYVEAQMAVNND 56
Query: 77 DATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG 136
DATKQ+FSRCLL CLQVPLW+CYIRFIRKVY+KKG EGQEET KAF+FML+++G+DI+SG
Sbjct: 57 DATKQIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASG 116
Query: 137 PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQ 196
PIW EYI FLKSLPALN E+ R A+RK Y RA++TPTHHVEQLWKDYENFEN+V+RQ
Sbjct: 117 PIWTEYIAFLKSLPALNLNEDLHRKTALRKVYHRAILTPTHHVEQLWKDYENFENTVNRQ 176
Query: 197 LAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK 256
LAKGL++EYQ K+ SARAVYRERKKY EEIDWNMLAVPPTG+ KEE QW+AWK+ L+FEK
Sbjct: 177 LAKGLVNEYQPKFNSARAVYRERKKYIEEIDWNMLAVPPTGTSKEETQWVAWKKFLSFEK 236
Query: 257 GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL 316
GNPQRIDTASS KRII+ YEQCLM LYHYPD+WYDYA W+ KSGS DAAIKVFQRALKA+
Sbjct: 237 GNPQRIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIKVFQRALKAI 296
Query: 317 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 376
PDSEML+YAFAE+EESRGAI +AKKLYE++L S N+ LAHIQ++RFLRR EGVEAARK
Sbjct: 297 PDSEMLKYAFAEMEESRGAIQSAKKLYENILGASTNS--LAHIQYLRFLRRAEGVEAARK 354
Query: 377 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 436
YFLDARKSP+ TYHVY+A+A MAFC DK+PK+AHN+FE GLK +M EP YIL+YADFL+R
Sbjct: 355 YFLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPVYILKYADFLTR 414
Query: 437 LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEE 496
LNDDRNIRALFERALS+LP E+S EVWKRF QFEQ YGDL S LKVEQR KEALS GEE
Sbjct: 415 LNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQRMKEALSGKGEE 474
Query: 497 GASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDK 556
G+S E SLQDVVSRYS+MDLWPC+S DLDHL RQE LVKN+NKK K+ L + P +
Sbjct: 475 GSSPPESSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKKAGKTNLPHVPAAI-- 532
Query: 557 GPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGIXXXXXXXXXXXXXXXXXXXMVATG 616
+ +S+ V+YPDTSQMV+ DP +K + AT
Sbjct: 533 ------GSVASSSKVVYPDTSQMVVQDPTKKSEFA---SSANPVAASASNTFPSTVTATA 583
Query: 617 GGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGK 671
G + FDE+ K PA+ AFLANLP V+GPTPNVD+VLSICLQSD PTGQ K
Sbjct: 584 THGSASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVK 638
Score = 390 (142.3 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 97/220 (44%), Positives = 119/220 (54%)
Query: 558 PSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGIXXXXXXXXXXXXXXXXXXXMVATGG 617
P+ + S +++S V+YPDTSQMV+ DP +K + AT
Sbjct: 529 PAAIGSVASSSK-VVYPDTSQMVVQDPTKKSEFA---SSANPVAASASNTFPSTVTATAT 584
Query: 618 GGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYP 677
G + FDE+ K PA+ AFLANLP V+GPTPNVD+VLSICLQSD PTGQ K
Sbjct: 585 HGSASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVKQSFAAK 644
Query: 678 TPIPTXXXXXXXXXXXXNKSHPTPXXXXXXXXXXXXXXXXXXIGQDDDETTTVQSQPQPR 737
P+ + S PT Q++D+T TVQSQP P
Sbjct: 645 GNPPSQN----------DPSGPTRGVSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPT 694
Query: 738 DFFRIRQMKKARG-AASSQT--GSASYGSAVSGDLSGSTG 774
D FR+RQM+KARG A SSQT GS SYGSA SG+LSGSTG
Sbjct: 695 DVFRLRQMRKARGIATSSQTPTGSTSYGSAFSGELSGSTG 734
>DICTYBASE|DDB_G0286645 [details] [associations]
symbol:cstf3 "cleavage stimulation factor subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF05843 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0286645
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0006378 GO:GO:0003723
EMBL:AAFI02000089 Gene3D:1.25.40.10 GO:GO:0006379 eggNOG:COG5107
KO:K14408 RefSeq:XP_637594.1 ProteinModelPortal:Q54LG7 PRIDE:Q54LG7
EnsemblProtists:DDB0233707 GeneID:8625734 KEGG:ddi:DDB_G0286645
InParanoid:Q54LG7 OMA:MARDIFE ProtClustDB:CLSZ2430079
Uniprot:Q54LG7
Length = 1065
Score = 1029 (367.3 bits), Expect = 1.4e-111, Sum P(4) = 1.4e-111
Identities = 216/528 (40%), Positives = 319/528 (60%)
Query: 5 SVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWK 64
+V+ E+ EN D Y+ E +L N P++ A IY++ LSVFPTA ++WK
Sbjct: 162 NVQIETLENRIN-NDMYDTEAWTLLLNEVQSQPISIARDIYKRFLSVFPTA----GRYWK 216
Query: 65 QYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDF 124
YVE M N D +++F L V W+ YI +I+++ K E +EE KAF+F
Sbjct: 217 LYVEEEMKEKNYDIVEKIFFENLRSVKNVEFWKSYIAYIKQIKGDK-VENREEIIKAFEF 275
Query: 125 MLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWK 184
L +G DISS IW +YI FLK A EE Q+M AIRK YQRA+ P H ++ ++K
Sbjct: 276 ALESIGMDISSTSIWTDYIQFLKDEKASTQFEEGQKMTAIRKLYQRAIENPMHDLDNIYK 335
Query: 185 DYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQ 244
+YE +ENS+++ LAK LLS++Q KY AR VYR+RK E I NMLA PP S KEE Q
Sbjct: 336 EYEVYENSINKTLAKALLSDHQGKYQHARNVYRDRKSLLEGILRNMLAKPPRSSDKEEHQ 395
Query: 245 WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA 304
W++L+T+E+ NPQ+ D + R+I TY QCL+ LYHYPDIWY+ AT+ A G
Sbjct: 396 VRLWRKLITYERSNPQKFDAVTLRNRVIATYNQCLLCLYHYPDIWYEAATYLADCGDSSG 455
Query: 305 AIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364
I +F R+L ALP + + +A+A+ ES+ AK++YE +L N L IQ+++F
Sbjct: 456 CIAMFDRSLIALPKNLFIHFAYADYLESQKKQPQAKEIYEKIL--QANPEPLVWIQYMKF 513
Query: 365 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424
RRTE +E RK F A+ +P+ TYHVY+A L+ + ++D ++A ++FE GLK+F E
Sbjct: 514 SRRTERIEGPRKIFKRAKSTPDCTYHVYIALGLIEYYINQDTRMARDIFEIGLKKFPSEI 573
Query: 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG-DLDSTLKVE 483
A++ Y +FL+ LN++ N R LFE+ L+ E+S +W++F FE D+ S LK+E
Sbjct: 574 AFVNFYIEFLTNLNEENNTRVLFEKLLTWPSLEKSESIWRKFLDFEYRQNQDVSSILKLE 633
Query: 484 QRRKEAL-SRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVR 530
+R + + S T + G LQ ++RY F++LW C +++ + +
Sbjct: 634 KRYQVTVNSNTDKSGV------LQ-ALNRYKFLNLWSCHPTEIEIITK 674
Score = 40 (19.1 bits), Expect = 1.4e-111, Sum P(4) = 1.4e-111
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 635 IFAFLANLPAVE---GPTPNVDIVLSICLQSDIP 665
IF FL NLP+ + GP + + ++ I + +P
Sbjct: 850 IFYFLQNLPSNQSFMGPYIDPEQLIGIIRDTPLP 883
Score = 39 (18.8 bits), Expect = 1.4e-111, Sum P(4) = 1.4e-111
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 722 QDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVS 766
Q DDE+ Q Q P +Q ++ + ++ T + S S ++
Sbjct: 963 QPDDESNNEQQQQPPPQQPPQQQQEQQQQPPTTTTATTSVVSPIT 1007
Score = 38 (18.4 bits), Expect = 1.4e-111, Sum P(4) = 1.4e-111
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 521 SSKDLDHLVRQEWLVK-NINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQM 579
+ KD + +E V ++KK + P I K P+ T T++ V PD +QM
Sbjct: 710 TEKDQGAIDGKEGAVAAKLHKKGKGKEIKPVPQIESK-PTFSTIIPTSNWKVKKPDITQM 768
Query: 580 V 580
V
Sbjct: 769 V 769
>UNIPROTKB|E1BGY7 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 Gene3D:1.25.40.10 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:DAAA02041256 EMBL:DAAA02041257
IPI:IPI00709818 Ensembl:ENSBTAT00000011369 Uniprot:E1BGY7
Length = 718
Score = 555 (200.4 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 105/283 (37%), Positives = 172/283 (60%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D +
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 85
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140
+LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW+
Sbjct: 86 KLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWV 144
Query: 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 200
+YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK
Sbjct: 145 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 204
Query: 201 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 260
++ + Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP
Sbjct: 205 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 264
Query: 261 RI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI 302
R D KR++F YEQCL+ L H+PDIWY+ A + +S +
Sbjct: 265 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 307
Score = 488 (176.8 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 127/349 (36%), Positives = 181/349 (51%)
Query: 263 DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA----AIKVFQ-----RAL 313
D KR++F YEQCL+ L H+PDIWY+ A + +S + A ++ F L
Sbjct: 268 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGVSVHFFPPFWSFHEL 327
Query: 314 KA-------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLT-DSVNTTALAHIQFIRFL 365
K L D +L Y + E SR +Y LL + ++ T L +IQ+++F
Sbjct: 328 KLESYVTMNLSDPIILFYVYTYDESSRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFA 386
Query: 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 425
RR EG+++ R F AR+ +HVYV ALM + ++D +A +FE GLK++ P
Sbjct: 387 RRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCNRDKSVAFKIFELGLKKYGDIPE 446
Query: 426 YILEYADFLSRLNDDRNIRALFERALSS--LPPEESIEVWKRFTQFEQMYGDLDSTLKVE 483
Y+L Y D+LS LN+D N R LFER L+S LPPE+S E+W RF FE GDL S LKVE
Sbjct: 447 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 506
Query: 484 QRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVD 543
+RR A E +AL +V RY FMDL+PCS+ +L L K++++
Sbjct: 507 KRRFTAFKEEYEGKETAL------LVDRYKFMDLYPCSASELKALG-----YKDVSR-AK 554
Query: 544 KSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 590
+A+ P + L PDT QM+ + PR PG+
Sbjct: 555 LAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 603
>UNIPROTKB|Q5F4A0 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF GeneTree:ENSGT00390000006758
EMBL:AADN02065603 EMBL:AJ851400 IPI:IPI00592390
RefSeq:NP_001012586.1 UniGene:Gga.22714 SMR:Q5F4A0 STRING:Q5F4A0
Ensembl:ENSGALT00000019104 GeneID:421595 KEGG:gga:421595
InParanoid:Q5F4A0 NextBio:20824338 Uniprot:Q5F4A0
Length = 718
Score = 869 (311.0 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 198/588 (33%), Positives = 314/588 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D +
Sbjct: 31 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 86
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140
+LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW+
Sbjct: 87 KLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWV 145
Query: 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 200
+YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK
Sbjct: 146 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 205
Query: 201 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 260
++ + Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP
Sbjct: 206 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 265
Query: 261 RI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAA 305
R D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 266 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 325
Query: 306 IKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364
+++RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F
Sbjct: 326 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 385
Query: 365 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424
RR EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P
Sbjct: 386 ARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 445
Query: 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 484
Y+L Y D+LS LN+D N R LFER L+S + + + +F ++ + +
Sbjct: 446 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILK 504
Query: 485 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK 544
K + EE E +L +V RY FMDL+PCS+ +L L K++++
Sbjct: 505 VEKRRFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDVSR-AKL 555
Query: 545 SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 590
+A+ P + L PDT QM+ + PR PG+
Sbjct: 556 AAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 603
Score = 46 (21.3 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 723 DDDETTTVQSQPQPRDFFRIRQMKKAR 749
DD+E +V P D +R RQ K+ R
Sbjct: 694 DDEEKGSVV--PPVHDIYRARQQKRIR 718
>ZFIN|ZDB-GENE-040426-1997 [details] [associations]
symbol:cstf3 "cleavage stimulation factor, 3'
pre-RNA, subunit 3" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
ZFIN:ZDB-GENE-040426-1997 GO:GO:0005634 GO:GO:0006397
Gene3D:1.25.40.10 CTD:1479 HOGENOM:HOG000231786 HOVERGEN:HBG053813
KO:K14408 EMBL:BC045871 IPI:IPI00497601 RefSeq:NP_998218.2
UniGene:Dr.104620 ProteinModelPortal:Q7ZVG5 SMR:Q7ZVG5
STRING:Q7ZVG5 PRIDE:Q7ZVG5 GeneID:406326 KEGG:dre:406326
InParanoid:Q7ZVG5 NextBio:20817950 ArrayExpress:Q7ZVG5 Bgee:Q7ZVG5
Uniprot:Q7ZVG5
Length = 716
Score = 872 (312.0 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 199/588 (33%), Positives = 313/588 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D +
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 85
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140
+LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW+
Sbjct: 86 KLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMPQAYDFALDKIGMEIMSYQIWV 144
Query: 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 200
+YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK
Sbjct: 145 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYSKYEEGINVHLAKK 204
Query: 201 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 260
++ + Y +AR V +E + + +D N +VPP S +E QQ WK+ + +EK NP
Sbjct: 205 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNSPQEAQQVEMWKKYIQWEKSNPL 264
Query: 261 RI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAA 305
R D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 265 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 324
Query: 306 IKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364
+++RA+ L ML Y +FA+ EESR +Y LL L +IQ+++F
Sbjct: 325 ANIYERAIGTLLKKNMLLYFSFADYEESRMKHEKVHSIYNRLLAIEDIDPTLVYIQYMKF 384
Query: 365 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424
RR EG+++ R F AR+ P +HVYV ALM + KD +A +FE GLK++ P
Sbjct: 385 ARRAEGIKSGRSIFKKAREDPRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 444
Query: 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 484
YIL Y D+LS LN+D N R LFER L+S + + + +F ++ + +
Sbjct: 445 EYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPE-KSGEIWARFLAFESNIGDLASILK 503
Query: 485 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK 544
+ +E E +L +V RY FMDL+PCS +L L K++++
Sbjct: 504 VERRRFMAFKDE-YEGKETAL--LVDRYKFMDLYPCSPSELKALG-----YKDVSRAKYA 555
Query: 545 SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 590
S + +V L + PDT QM+ + PR PG+
Sbjct: 556 SLIPEA--VVAPSTPALKDEADRKPEYPKPDTCQMIPFQPRHLAPPGL 601
Score = 41 (19.5 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 724 DDETTTVQSQPQPRDFFRIRQMKKAR 749
D+E P D +R RQ K+ R
Sbjct: 691 DEEEDKGSIAPPIHDIYRARQQKRIR 716
>UNIPROTKB|E2R479 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 CTD:1479 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:AAEX03011399 RefSeq:XP_533159.2
ProteinModelPortal:E2R479 Ensembl:ENSCAFT00000011665 GeneID:475948
KEGG:cfa:475948 NextBio:20851693 Uniprot:E2R479
Length = 717
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 198/588 (33%), Positives = 314/588 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D +
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 85
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140
+LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW+
Sbjct: 86 KLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWV 144
Query: 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 200
+YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK
Sbjct: 145 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 204
Query: 201 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 260
++ + Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP
Sbjct: 205 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 264
Query: 261 RI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAA 305
R D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 265 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 324
Query: 306 IKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364
+++RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F
Sbjct: 325 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 384
Query: 365 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424
RR EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P
Sbjct: 385 ARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 444
Query: 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 484
Y+L Y D+LS LN+D N R LFER L+S + + + +F ++ + +
Sbjct: 445 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILK 503
Query: 485 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK 544
K + EE E +L +V RY FMDL+PCS+ +L L K++++
Sbjct: 504 VEKRRFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDVSR-AKL 554
Query: 545 SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 590
+A+ P + L PDT QM+ + PR PG+
Sbjct: 555 AAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
>UNIPROTKB|Q12996 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0006379 "mRNA
cleavage" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
GO:GO:0005654 EMBL:CH471064 Reactome:REACT_1675 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006379
GO:GO:0006369 Reactome:REACT_78 EMBL:U15782 EMBL:AK290836
EMBL:AC131263 EMBL:AL121926 EMBL:BC009792 EMBL:BC010533
EMBL:BC059948 EMBL:BC108319 EMBL:BM014288 IPI:IPI00015195
IPI:IPI00382661 IPI:IPI00651748 PIR:S50852 RefSeq:NP_001028677.1
RefSeq:NP_001028678.1 RefSeq:NP_001317.1 UniGene:Hs.44402
ProteinModelPortal:Q12996 SMR:Q12996 DIP:DIP-48674N IntAct:Q12996
STRING:Q12996 PhosphoSite:Q12996 DMDM:71153231 PaxDb:Q12996
PeptideAtlas:Q12996 PRIDE:Q12996 DNASU:1479 Ensembl:ENST00000323959
Ensembl:ENST00000431742 Ensembl:ENST00000438862 GeneID:1479
KEGG:hsa:1479 UCSC:uc001muh.3 CTD:1479 GeneCards:GC11M033106
H-InvDB:HIX0021822 HGNC:HGNC:2485 HPA:HPA039743 HPA:HPA040168
MIM:600367 neXtProt:NX_Q12996 PharmGKB:PA26987 eggNOG:COG5107
HOGENOM:HOG000231786 HOVERGEN:HBG053813 InParanoid:Q12996 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF PhylomeDB:Q12996 GenomeRNAi:1479
NextBio:6077 PMAP-CutDB:Q12996 ArrayExpress:Q12996 Bgee:Q12996
CleanEx:HS_CSTF3 Genevestigator:Q12996 GermOnline:ENSG00000176102
Uniprot:Q12996
Length = 717
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 198/588 (33%), Positives = 314/588 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D +
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 85
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140
+LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW+
Sbjct: 86 KLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWV 144
Query: 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 200
+YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK
Sbjct: 145 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 204
Query: 201 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 260
++ + Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP
Sbjct: 205 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 264
Query: 261 RI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAA 305
R D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 265 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 324
Query: 306 IKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364
+++RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F
Sbjct: 325 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 384
Query: 365 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424
RR EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P
Sbjct: 385 ARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 444
Query: 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 484
Y+L Y D+LS LN+D N R LFER L+S + + + +F ++ + +
Sbjct: 445 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILK 503
Query: 485 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK 544
K + EE E +L +V RY FMDL+PCS+ +L L K++++
Sbjct: 504 VEKRRFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDVSR-AKL 554
Query: 545 SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 590
+A+ P + L PDT QM+ + PR PG+
Sbjct: 555 AAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
>MGI|MGI:1351825 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA,
subunit 3" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843
SMART:SM00386 MGI:MGI:1351825 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF EMBL:BC003241 IPI:IPI00116929
RefSeq:NP_663504.1 UniGene:Mm.259876 UniGene:Mm.479443 PDB:2OND
PDB:2OOE PDBsum:2OND PDBsum:2OOE ProteinModelPortal:Q99LI7
SMR:Q99LI7 STRING:Q99LI7 PhosphoSite:Q99LI7 PaxDb:Q99LI7
PRIDE:Q99LI7 Ensembl:ENSMUST00000028599 GeneID:228410
KEGG:mmu:228410 GeneTree:ENSGT00390000006758 InParanoid:Q99LI7
ChiTaRS:CSTF3 EvolutionaryTrace:Q99LI7 NextBio:378988 Bgee:Q99LI7
Genevestigator:Q99LI7 GermOnline:ENSMUSG00000027176 Uniprot:Q99LI7
Length = 717
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 198/588 (33%), Positives = 314/588 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D +
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 85
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140
+LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW+
Sbjct: 86 KLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWV 144
Query: 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 200
+YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK
Sbjct: 145 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 204
Query: 201 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 260
++ + Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP
Sbjct: 205 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 264
Query: 261 RI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAA 305
R D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 265 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 324
Query: 306 IKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364
+++RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F
Sbjct: 325 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 384
Query: 365 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424
RR EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P
Sbjct: 385 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 444
Query: 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 484
Y+L Y D+LS LN+D N R LFER L+S + + + +F ++ + +
Sbjct: 445 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILK 503
Query: 485 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK 544
K + EE E +L +V RY FMDL+PCS+ +L L K++++
Sbjct: 504 VEKRRFTAFREE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDVSR-AKL 554
Query: 545 SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 590
+A+ P + L PDT QM+ + PR PG+
Sbjct: 555 AAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
>WB|WBGene00006307 [details] [associations]
symbol:suf-1 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0009792 GO:GO:0006397 GO:GO:0000003 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:Z68315 PIR:T21484
RefSeq:NP_495825.1 ProteinModelPortal:Q19866 SMR:Q19866
STRING:Q19866 EnsemblMetazoa:F28C6.6.1 EnsemblMetazoa:F28C6.6.2
GeneID:174380 KEGG:cel:CELE_F28C6.6 UCSC:F28C6.6.1 CTD:174380
WormBase:F28C6.6 InParanoid:Q19866 NextBio:883790
ArrayExpress:Q19866 Uniprot:Q19866
Length = 735
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 178/523 (34%), Positives = 289/523 (55%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
++V+ +L P+ Q YE L+ FP + ++WK Y+E + N + +
Sbjct: 18 FDVDAWNLLLREHQSRPIDQERDFYESLVKQFPNS----GRYWKAYIEHELRSKNFENVE 73
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQ--EETRKAFDFMLSHVGSDISSGPI 138
+LFSRCL+ L + LW+CYI + V+E KG Q EE KA+DF L VG D+ + I
Sbjct: 74 KLFSRCLVSVLNIDLWKCYIHY---VFETKGQRDQYREEMAKAYDFALEKVGMDVQAYSI 130
Query: 139 WLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLA 198
+ EYI FLK +PA+ E+QR+ A+RK YQ+A+ TP H++E +W DY +E +++ LA
Sbjct: 131 FTEYIAFLKKVPAVGQYAENQRITAVRKIYQKALATPMHNLELIWNDYCTYEKAINITLA 190
Query: 199 KGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN 258
+ L++E +Y +AR V ++ ++ ++ ++VPP G+ E +Q WK L+ +EK N
Sbjct: 191 EKLIAERGKEYQNARRVEKDLQQMTRGLNRQAVSVPPKGTATEFKQVELWKNLIAWEKTN 250
Query: 259 PQRIDTASSN-KRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-------GSIDAA----- 305
P + + + +R+++TYEQ L+ L +YPDIWY+ A + ++ G + A
Sbjct: 251 PLQTEEYGQHARRVVYTYEQSLLCLGYYPDIWYEAAMFLQEASHTLDEKGDVKMAQVLKL 310
Query: 306 --IKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362
I +++RA+ L +S++L +A+A+ +E A K +Y+ LL L ++Q +
Sbjct: 311 ETISLYERAITGLMKESKLLYFAYADFQEEHKQFEAVKNIYDRLLGIEHINPTLTYVQLM 370
Query: 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422
RF+RR+EG AR F AR+ Y V+VA AL+ + KD ++A VF+ GLK++ +
Sbjct: 371 RFIRRSEGPNNARLVFKRAREDKRTGYQVFVAAALLEYNCMKDKEVAIRVFKLGLKKYEN 430
Query: 423 EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKV 482
EP + L YADFLS LN+D N R +FER L+S + + + +F + +
Sbjct: 431 EPEFGLAYADFLSNLNEDNNTRVVFERILTSSKLPADKSI-RIWDRFLDFESCVGDLASI 489
Query: 483 EQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDL 525
+ K + E + V+ RY FMDL PCS + L
Sbjct: 490 LKVEKRRKTAYEEAQKDQTMNHSMLVIDRYKFMDLMPCSGEQL 532
Score = 440 (159.9 bits), Expect = 9.2e-39, P = 9.2e-39
Identities = 112/292 (38%), Positives = 164/292 (56%)
Query: 306 IKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLL-TDSVNTTALAHIQFIR 363
I +++RA+ L +S++L +A+A+ +E A K +Y+ LL + +N T L ++Q +R
Sbjct: 313 ISLYERAITGLMKESKLLYFAYADFQEEHKQFEAVKNIYDRLLGIEHINPT-LTYVQLMR 371
Query: 364 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423
F+RR+EG AR F AR+ Y V+VA AL+ + KD ++A VF+ GLK++ +E
Sbjct: 372 FIRRSEGPNNARLVFKRAREDKRTGYQVFVAAALLEYNCMKDKEVAIRVFKLGLKKYENE 431
Query: 424 PAYILEYADFLSRLNDDRNIRALFERALSS--LPPEESIEVWKRFTQFEQMYGDLDSTLK 481
P + L YADFLS LN+D N R +FER L+S LP ++SI +W RF FE GDL S LK
Sbjct: 432 PEFGLAYADFLSNLNEDNNTRVVFERILTSSKLPADKSIRIWDRFLDFESCVGDLASILK 491
Query: 482 VEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKK 541
VE+RRK A ++ + S+ V+ RY FMDL PCS + L L+ L K
Sbjct: 492 VEKRRKTAYEEAQKD--QTMNHSML-VIDRYKFMDLMPCSGEQLK-LIGYNAL-KGTESI 546
Query: 542 VDKSALSNGPGIVDKGP---SGLTSNSTTSATVI-Y----PDTSQMVIYDPR 585
S + + + GP S + + A V Y PD SQM+ + PR
Sbjct: 547 AGPSFVGS-KNVPTHGPQAASAIMGGAGGHADVARYGFPRPDISQMIPFKPR 597
>RGD|1305901 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA, subunit
3, 77kDa" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 RGD:1305901
GO:GO:0005634 GO:GO:0006397 GeneTree:ENSGT00390000006758
IPI:IPI00373657 Ensembl:ENSRNOT00000016318 UCSC:RGD:1305901
Uniprot:F1M4W7
Length = 647
Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
Identities = 183/543 (33%), Positives = 286/543 (52%)
Query: 66 YVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFM 125
YV + N D ++LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF
Sbjct: 1 YVSLQIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFA 59
Query: 126 LSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKD 185
L +G +I S IW++YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+D
Sbjct: 60 LDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 119
Query: 186 YENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQW 245
Y +E ++ LAK ++ + Y +AR V +E + + +D N +VPP + +E QQ
Sbjct: 120 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 179
Query: 246 IAWKRLLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI-- 302
WK+ + +EK NP R D KR++F YEQCL+ L H+PDIWY+ A + +S +
Sbjct: 180 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 239
Query: 303 ------------DAAIKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTD 349
D A +++RA+ L ML Y A+A+ EESR +Y LL
Sbjct: 240 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 299
Query: 350 SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA 409
L +IQ+++F RR EG+++ R F AR+ +HVYV ALM + KD +A
Sbjct: 300 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 359
Query: 410 HNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 469
+FE GLK++ P Y+L Y D+LS LN+D N R LFER L+S + + + +F
Sbjct: 360 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARF 418
Query: 470 EQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLV 529
++ + + K + EE E +L +V RY FMDL+PCS+ +L L
Sbjct: 419 LAFESNIGDLASILKVEKRRFTAFREE-YEGKETAL--LVDRYKFMDLYPCSASELKALG 475
Query: 530 RQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--K 587
K++++ +A+ P + L PDT QM+ + PR
Sbjct: 476 -----YKDVSR-AKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAP 529
Query: 588 PGI 590
PG+
Sbjct: 530 PGL 532
>FB|FBgn0003559 [details] [associations]
symbol:su(f) "suppressor of forked" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005848
"mRNA cleavage stimulating factor complex" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0016070 "RNA metabolic process" evidence=NAS]
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
EMBL:CM000460 GO:GO:0006379 eggNOG:COG5107 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:X62679 EMBL:BT012671
EMBL:BT021384 EMBL:AY102664 PIR:A46389 PIR:B46389
RefSeq:NP_001015240.1 RefSeq:NP_001015241.3 RefSeq:NP_001104479.1
RefSeq:NP_001104480.2 UniGene:Dm.8029 ProteinModelPortal:P25991
SMR:P25991 DIP:DIP-22591N IntAct:P25991 MINT:MINT-312459
STRING:P25991 PaxDb:P25991 EnsemblMetazoa:FBtr0113732
EnsemblMetazoa:FBtr0306544 GeneID:3354994 KEGG:dme:Dmel_CG17170
CTD:252748 FlyBase:FBgn0003559 InParanoid:P25991 OrthoDB:EOG4V15FR
PhylomeDB:P25991 GenomeRNAi:3354994 NextBio:850013 Bgee:P25991
GO:GO:0005848 Uniprot:P25991
Length = 765
Score = 513 (185.6 bits), Expect = 2.4e-51, Sum P(3) = 2.4e-51
Identities = 98/271 (36%), Positives = 166/271 (61%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y++E+ ++ A P+ + +YE L++VFPT A++WK Y+E M + +
Sbjct: 31 YDIESWSVMIREAQTRPIHEVRSLYESLVNVFPTT----ARYWKLYIEMEMRSRYYERVE 86
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140
+LF RCL+ L + LW+ Y+ ++++ T +E+ +A+DF L +G D+ S IW
Sbjct: 87 KLFQRCLVKILNIDLWKLYLTYVKETKSGLSTH-KEKMAQAYDFALEKIGMDLHSFSIWQ 145
Query: 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 200
+YI FL+ + A+ E+Q++ A+R+ YQ+AVVTP +EQLWKDY FE +++ +++
Sbjct: 146 DYIYFLRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPIISEK 205
Query: 201 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 260
+ E Y +AR V +E + + + ++ N+ AVPPT + +E +Q WKR +T+EK NP
Sbjct: 206 MSLERSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYEKSNPL 265
Query: 261 RI-DTASSNKRIIFTYEQCLMYLYHYPDIWY 290
R DTA +R++F EQCL+ L H+P +W+
Sbjct: 266 RTEDTALVTRRVMFATEQCLLVLTHHPAVWH 296
Score = 477 (173.0 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 153/509 (30%), Positives = 249/509 (48%)
Query: 95 LWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSL-PA 151
+W+ YI F+R V E G E Q+ T + + V + +W +YI F +++ P
Sbjct: 143 IWQDYIYFLRGV-EAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPI 201
Query: 152 LNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQ------LAKGLLSEY 205
++ + +R A +R +H + L ++ +++++ L K ++
Sbjct: 202 ISEKMSLERSKDYMNA-RRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYE 260
Query: 206 QSK--YTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRID 263
+S T A+ R + E +L P ++ Q R+LT EKG ++
Sbjct: 261 KSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLT-EKGVRTSVE 319
Query: 264 TASSNK--RIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSE 320
S ++ E + + + W+ AK + D + +R++ L +
Sbjct: 320 NISPILCVPVVNQIEWVMAFAW-----WWAKDVQAAKIFA-DECANILERSINGVLNRNA 373
Query: 321 MLRYAFAELEESRGAIAAAKKLYESLLT-DSVNTTALAHIQFIRFLRRTEGVEAARKYFL 379
+L +A+A+ EE R +Y LL ++ T L ++Q+++F RR EG+++AR F
Sbjct: 374 LLYFAYADFEEGRLKYEKVHTMYNKLLQLPDIDPT-LVYVQYMKFARRAEGIKSARSIFK 432
Query: 380 DARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 439
AR+ YH++VA ALM + KD ++A +FE GLKRF P Y++ Y D+LS LN+
Sbjct: 433 KAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMCYIDYLSHLNE 492
Query: 440 DRNIRALFERALSS--LPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGE-E 496
D N R LFER LSS L P +S+EVW RF +FE GDL S +KVE+RR E E
Sbjct: 493 DNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLSSIVKVERRRSAVFENLKEYE 552
Query: 497 GASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDK 556
G +++ Q +V RY F+DL+PC+S +L + E V I KV A S G V+
Sbjct: 553 G----KETAQ-LVDRYKFLDLYPCTSTELKSIGYAE-NVGIILNKVGGGAQSQNTGEVE- 605
Query: 557 GPSGLTSNSTTSATVIYPDTSQMVIYDPR 585
++S + + PD SQM+ + PR
Sbjct: 606 ------TDSEATPPLPRPDFSQMIPFKPR 628
Score = 51 (23.0 bits), Expect = 2.4e-51, Sum P(3) = 2.4e-51
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 721 GQD-DDETTTVQSQPQPRDFFRIRQMKK 747
G D DDE T + P D +R+RQ+K+
Sbjct: 735 GDDSDDELQT--AVPPSHDIYRLRQLKR 760
Score = 48 (22.0 bits), Expect = 2.4e-51, Sum P(3) = 2.4e-51
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 633 PAIFAFLANLP---AVEGPTPNVDIVLSICLQSDIP 665
PA+ A A LP + GP +V+++ I ++ ++P
Sbjct: 647 PALAALCATLPPPNSFRGPFVSVELLFDIFMRLNLP 682
>POMBASE|SPAC6F12.17 [details] [associations]
symbol:rna14 "mRNA cleavage and polyadenylation
specificity factor complex subunit Rna14 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPAC6F12.17
GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006378
Gene3D:1.25.40.10 GO:GO:0005847 GO:GO:0006379 eggNOG:COG5107
KO:K14408 OrthoDB:EOG49S9G9 PIR:T11668 RefSeq:NP_593303.1
ProteinModelPortal:O14233 STRING:O14233 EnsemblFungi:SPAC6F12.17.1
GeneID:2541600 KEGG:spo:SPAC6F12.17 OMA:YTKWENE NextBio:20802694
Uniprot:O14233
Length = 733
Score = 473 (171.6 bits), Expect = 1.3e-42, P = 1.3e-42
Identities = 99/306 (32%), Positives = 169/306 (55%)
Query: 45 YEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIR 104
YEQ+L FP ++ + W Y+ + +A N+ A + LFSRCL+ L V LW Y+ +IR
Sbjct: 94 YEQMLRPFP----YVPRVWVDYISSELAFNDFHAVELLFSRCLVKVLSVDLWTLYLSYIR 149
Query: 105 KVYEKKGTEGQEETR--KAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI 162
++ G EGQ + +A++F+++ +G DI SGPIW E++ FL+S PA + E+ Q++
Sbjct: 150 RI-NPDG-EGQSRSTITQAYEFVINTIGVDILSGPIWSEFVDFLRSGPANSTWEQQQKLD 207
Query: 163 AIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKY 222
+R+ YQRA+ TP H++E+LW+DY+ FENSV+R A+ ++E Y +ARA RE
Sbjct: 208 HVRRIYQRAITTPIHNIEKLWRDYDAFENSVNRATARKFVAEKSPVYMAARAAMRELSNL 267
Query: 223 CEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASS-NKRIIFTYEQCLMY 281
E + + E + W + +E+ +P + + RI + +EQ ++Y
Sbjct: 268 TEGLRVYDFTFERKYTKVERIAYSRWMNWIKWEQSDPLDLQHGTMLQNRIAYAFEQAMLY 327
Query: 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKK 341
+ P IW D ++ A++ +R ++ P + +L +AE EE+ + +
Sbjct: 328 VPLCPQIWLDGFSYFLSISDEQRALQTIRRGMRYCPSNFVLHVRYAEHEEANNRTSEIRS 387
Query: 342 LYESLL 347
YESL+
Sbjct: 388 TYESLI 393
Score = 277 (102.6 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 65/193 (33%), Positives = 107/193 (55%)
Query: 296 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS---VN 352
N ++ I + + AL A S++ A + E S KKL E L+ V
Sbjct: 379 NNRTSEIRSTYESLIAAL-AREISQLDSKASSSSESSTDGNPQEKKLPEHLVKRKSRLVR 437
Query: 353 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV 412
+LA I +RRTEGV+AAR F ARK+P ++ +Y+A A+M +DP +A +
Sbjct: 438 QYSLAWCCLINAIRRTEGVKAARAIFTKARKAPYQSHEIYIASAMMEHHCSRDPVIASRI 497
Query: 413 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 472
FE G++ F PAY+ +Y +L +ND+ N RALFE+A+ + +E+ +++++ +E
Sbjct: 498 FELGMRHFGDVPAYVYKYLSYLIAINDETNARALFEKAIPRIAADEAKPIYQKWLDYESN 557
Query: 473 YGDLDSTLKVEQR 485
YGDL++ + + QR
Sbjct: 558 YGDLNAAIALSQR 570
Score = 57 (25.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 274 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRAL 313
TYEQ L + P +W DY + A +F R L
Sbjct: 93 TYEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLFSRCL 132
>UNIPROTKB|G4N9J4 [details] [associations]
symbol:MGG_03265 "mRNA 3'-end-processing protein RNA-14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF05843 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:CM001234 KO:K14408
RefSeq:XP_003716705.1 EnsemblFungi:MGG_03265T0 GeneID:2676854
KEGG:mgr:MGG_03265 Uniprot:G4N9J4
Length = 1057
Score = 365 (133.5 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
Identities = 87/312 (27%), Positives = 160/312 (51%)
Query: 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWR 97
+ Q ++E+ L+VFP A A+ W QY + ++ N + +F + L+ V LW
Sbjct: 197 IEQCRDVFERFLAVFPHA----AEVWVQYADMELSQGNFVEAEAIFGKSLMSVPNVQLWT 252
Query: 98 CYIRFIRKVYEKKGTEGQ--EETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPAL--- 152
Y+ +IR+ + + G+ + +A+DF++ +VG D + IW +YI F++ P +
Sbjct: 253 VYLDYIRRRNDLNDSSGRARQVVTQAYDFVIDNVGLDKDASKIWNDYIQFIRLAPGVVGG 312
Query: 153 NAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSA 212
+A ++ Q+M +RKAYQRAV P +V LW++Y+ FE ++ + L+E Y +A
Sbjct: 313 SAWQDQQKMDQLRKAYQRAVCIPLSNVNTLWREYDQFEKGLNPTTGRKYLNERSPAYMTA 372
Query: 213 RAVYRERKKYCEEIDWNMLA-VPPTGSYKEE----QQWIAWKRLLTFEKGNPQRIDTASS 267
++ + + L +PP ++ + +Q WKR + +EK +P + T
Sbjct: 373 KSANTALENIMRNLVRTTLPRLPPAPGFEGDVEFAEQVDLWKRWVKWEKEDPLDLATDDP 432
Query: 268 N---KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI----DAAIKVFQRALKALPDSE 320
KRI++ Y+Q +M L P+IW D A W ++ + DA ++ ++A P+S
Sbjct: 433 ELFKKRILYAYKQAIMALRFCPEIWVDAAEWCFENSILVNGKDAGLEFLTEGIEANPESV 492
Query: 321 MLRYAFAELEES 332
+L A+ E+
Sbjct: 493 LLALKHADRIET 504
Score = 166 (63.5 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
Identities = 51/174 (29%), Positives = 83/174 (47%)
Query: 327 AELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG-------VEAARKYFL 379
+ELEE I+A +K + + T + I R +RR +G + R+ F
Sbjct: 575 SELEEK---ISALEKGFGAQTDLLARTVSFVWIALARAMRRIQGKGQPGSPMGGMRQVFS 631
Query: 380 DARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 439
+ARK T VYVA A + + KDP +F+ G K F + ++LEY +L D
Sbjct: 632 EARKRGRLTSDVYVAIAQLEWTVYKDPS-GGKIFDRGSKLFPEDEIFMLEYLKYLHSRED 690
Query: 440 DRNIRALFERALSSLP--P---EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 488
N R +FE ++ L P ++ ++ F ++E +G+L T K+E+R E
Sbjct: 691 TTNARVVFETCVNKLTQNPATVHKAKPLYSYFHKYESKFGELSQTAKLEKRMAE 744
Score = 59 (25.8 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 30/158 (18%), Positives = 61/158 (38%)
Query: 63 WKQYVEAYMAVNNDDATKQLFSRCLLICLQVP-LWRCYIRFIRKVYEKKGTEGQEETRKA 121
W + AY NN + + +F R L + +W Y ++ + E + K+
Sbjct: 184 WLSLIAAYRQRNNIEQCRDVFERFLAVFPHAAEVWVQYADM--ELSQGNFVEAEAIFGKS 241
Query: 122 FDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV--VTPTHHV 179
++S + + +W Y+ +++ LN R + + +AY + V
Sbjct: 242 ---LMS-----VPNVQLWTVYLDYIRRRNDLNDSSGRARQV-VTQAYDFVIDNVGLDKDA 292
Query: 180 EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYR 217
++W DY F ++ + G + Q K R Y+
Sbjct: 293 SKIWNDYIQFIR-LAPGVVGGSAWQDQQKMDQLRKAYQ 329
Score = 55 (24.4 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 307 KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 358
K+F R K P+ E+ + + SR A+ ++E+ + A H
Sbjct: 662 KIFDRGSKLFPEDEIFMLEYLKYLHSREDTTNARVVFETCVNKLTQNPATVH 713
>SGD|S000004665 [details] [associations]
symbol:RNA14 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006379 "mRNA cleavage"
evidence=IDA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005849
"mRNA cleavage factor complex" evidence=IPI] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0046982
"protein heterodimerization activity" evidence=IPI]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 SGD:S000004665 UniProt:P25298
GO:GO:0005739 GO:GO:0006378 EMBL:BK006946 Gene3D:1.25.40.10
EMBL:Z49703 GO:GO:0006379 GO:GO:0005849 eggNOG:COG5107 KO:K14408
GeneTree:ENSGT00390000006758 OrthoDB:EOG49S9G9 OMA:YTKWENE
EMBL:M73461 PIR:S54561 RefSeq:NP_013777.1 PDB:2L9B PDBsum:2L9B
ProteinModelPortal:P25298 SMR:P25298 DIP:DIP-1488N IntAct:P25298
MINT:MINT-400599 STRING:P25298 PaxDb:P25298 PRIDE:P25298
EnsemblFungi:YMR061W GeneID:855083 KEGG:sce:YMR061W CYGD:YMR061w
HOGENOM:HOG000000753 NextBio:978372 Genevestigator:P25298
GermOnline:YMR061W
Length = 677
Score = 276 (102.2 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 75/309 (24%), Positives = 143/309 (46%)
Query: 39 AQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ---VPL 95
A+ +YEQ + FP F + W ++ +A + + +++ ++CL L+ + L
Sbjct: 59 AKVREVYEQFHNTFP----FYSPAWTLQLKGELARDEFETVEKILAQCLSGKLENNDLSL 114
Query: 96 WRCYIRFIRKVYE--KKGTEGQEETRKAFDFMLSHVGS-DISSGPIWLEYITFLKSLPAL 152
W Y+ +IR+ G E + KAF ++ + S W EY+ FL+
Sbjct: 115 WSTYLDYIRRKNNLITGGQEARAVIVKAFQLVMQKCAIFEPKSSSFWNEYLNFLEQWKPF 174
Query: 153 NAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSA 212
N EE QR+ +R+ Y++ + P ++E++W Y +E ++ A+ + E ++Y A
Sbjct: 175 NKWEEQQRIDMLREFYKKMLCVPFDNLEKMWNRYTQWEQEINSLTARKFIGELSAEYMKA 234
Query: 213 RAVYRE------RKKYCEEIDW---NMLAVPPTGSYKEE-QQWIAWKRLLTFEKGNPQRI 262
R++Y+E K I+ N +P G+ QQ W + +E+ N +
Sbjct: 235 RSLYQEWLNVTNGLKRASPINLRTANKKNIPQPGTSDSNIQQLQIWLNWIKWERENKLML 294
Query: 263 DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEML 322
++RI + Y+Q + Y+ ++WYDY+ + +++ + AL A PDS L
Sbjct: 295 SEDMLSQRISYVYKQGIQYMIFSAEMWYDYSMYISENSDRQ---NILYTALLANPDSPSL 351
Query: 323 RYAFAELEE 331
+ +E E
Sbjct: 352 TFKLSECYE 360
Score = 190 (71.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 43/127 (33%), Positives = 68/127 (53%)
Query: 361 FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 419
++ ++R G+ AAR F RK T+ VYV A + F D K A V E GLK
Sbjct: 419 YMNTMKRISGLSAARTVFGKCRKLKRILTHDVYVENAYLEFQNQNDYKTAFKVLELGLKY 478
Query: 420 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI-EVWKRFTQFEQMYGDLDS 478
F ++ YI +Y DFL LN D I+ LFE ++ + + E++K+ +E +G+L++
Sbjct: 479 FQNDGVYINKYLDFLIFLNKDSQIKTLFETSVEKVQDLTQLKEIYKKMISYESKFGNLNN 538
Query: 479 TLKVEQR 485
+E+R
Sbjct: 539 VYSLEKR 545
Score = 40 (19.1 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 24/114 (21%), Positives = 47/114 (41%)
Query: 391 VYV-AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE-YADFLS---RLNDDRNIRA 445
VY+ Y +KD ++ +FE +++ + + + E Y +S + + N+ +
Sbjct: 484 VYINKYLDFLIFLNKDSQIK-TLFETSVEK-VQDLTQLKEIYKKMISYESKFGNLNNVYS 541
Query: 446 LFERALSSLPPEESIEVW-KRFT-QFEQMYGDLDSTLKVEQRRKEALSRTGEEG 497
L +R P E IEV+ R+ Q + L+ T + S +G
Sbjct: 542 LEKRFFERFPQENLIEVFTSRYQIQNSNLIKKLELTYMYNEEEDSYFSSGNGDG 595
>CGD|CAL0005466 [details] [associations]
symbol:orf19.1531 species:5476 "Candida albicans" [GO:0003723
"RNA binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
CGD:CAL0005466 GO:GO:0005634 GO:GO:0005737 GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AACQ01000008 EMBL:AACQ01000007
eggNOG:COG5107 KO:K14408 RefSeq:XP_722436.1 RefSeq:XP_722575.1
ProteinModelPortal:Q5AM44 STRING:Q5AM44 GeneID:3635749
GeneID:3635890 KEGG:cal:CaO19.1531 KEGG:cal:CaO19.9106
Uniprot:Q5AM44
Length = 791
Score = 322 (118.4 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 90/320 (28%), Positives = 161/320 (50%)
Query: 40 QAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCY 99
Q +++ L +F F W +Y++ + + + + LF +CL I V L R Y
Sbjct: 48 QVRNTFDKYLKIF----KFDGASWCKYIKYELNRDEKEKVENLFQQCLGITDNVELCRLY 103
Query: 100 IRFIRKV--YEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSL-PALNAQE 156
+ ++R V + G + + +AF+F ++ VG DI+S +W +YI FL+S P N E
Sbjct: 104 VDYVRGVTDFVTGGEKARGVVVQAFEFAINKVGIDITSESLWQDYIQFLQSWNPNAN-WE 162
Query: 157 ESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVY 216
+ Q++ IRK Y++ + PT ++E W Y +EN ++ A +SE ++ AR+
Sbjct: 163 QQQKIDLIRKVYKKFLTIPTENIEVSWSQYTKWENELNPATASKFISEKSGEFMLARSWN 222
Query: 217 RERKKYCEE-IDWNMLAVPPTGSYKEE---QQWIAWKRLLTFEKGNPQRI-DTASSNKRI 271
E + ++ + N+ P G + +E +Q W R L EK N + D ++KRI
Sbjct: 223 TEFNRITDKSLKRNL---NP-GDHNDEDVVKQLKYWLRWLELEKENKLELKDETVNDKRI 278
Query: 272 IFTYEQCLMYLYHYPDIWYDYATW---NAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFA 327
+ Y+Q L P+IW+ Y + + G++ +I++ + AL P S +L + A
Sbjct: 279 QYVYKQATYALPFVPEIWFQYVKYLLVQNEEGNLQESIRLLKEGGLALNPKSMLLTFQLA 338
Query: 328 ELEESRGAIAAAKKLYESLL 347
EL E + AK ++++LL
Sbjct: 339 ELYERDNSFNNAKIVFKNLL 358
Score = 132 (51.5 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 33/127 (25%), Positives = 65/127 (51%)
Query: 333 RGAIAAAKKL--YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYH 390
R ++A +K+L +E+ + L +++ + +R+EG++ AR F ARK + Y
Sbjct: 458 RISLADSKQLLSFENEQKRLSDAITLTYVKSMIASKRSEGIKEARNVFKQARKFTDIGYQ 517
Query: 391 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERA 450
+++ AL+ DK A +F+ G K F ++L Y D+L +ND +R + + +
Sbjct: 518 IFIESALLEHYSDKK-STALKIFDLGKKNFATNGKFLLNYLDYLIMINDVDTMRTVIQSS 576
Query: 451 LSSLPPE 457
++ E
Sbjct: 577 DANFTKE 583
Score = 58 (25.5 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 33/159 (20%), Positives = 66/159 (41%)
Query: 63 WKQYVEAYMAVNNDDATKQLFSRCLLIC-LQVPLWRCYIRFIRKVYEKKGTEGQEETRKA 121
W++ ++ + +N + + F + L I W YI+ YE E +E+
Sbjct: 33 WQKLIDQLIIKDNQEQVRNTFDKYLKIFKFDGASWCKYIK-----YELNRDE-KEKVENL 86
Query: 122 FDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI--AIRKAYQRAVVTPTHHV 179
F L + ++ ++++Y+ + + E+++ ++ A A + + T
Sbjct: 87 FQQCLG-ITDNVELCRLYVDYVRGVTDF--VTGGEKARGVVVQAFEFAINKVGIDITS-- 141
Query: 180 EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE 218
E LW+DY F S + A E Q K R VY++
Sbjct: 142 ESLWQDYIQFLQSWNPN-ANW---EQQQKIDLIRKVYKK 176
>ASPGD|ASPL0000073973 [details] [associations]
symbol:AN4892 species:162425 "Emericella nidulans"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:BN001303 EMBL:AACD01000084
eggNOG:COG5107 KO:K14408 RefSeq:XP_662496.1 GeneID:2872687
KEGG:ani:AN4892.2 HOGENOM:HOG000197404 OMA:QDQQKMD
OrthoDB:EOG49S9G9 Uniprot:Q5B3I8
Length = 1075
Score = 385 (140.6 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 91/306 (29%), Positives = 155/306 (50%)
Query: 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWR 97
+ A +YE+ L VFP + A+ W Y +N +Q+F+R LL V LW
Sbjct: 272 IDSARDVYERFLKVFPLS----AEMWVAYATMESELNELFRLEQIFNRTLLTIPAVQLWT 327
Query: 98 CYIRFIRKVYEKKGTEGQEETRK----AFDFMLSHVGSDISSGPIWLEYITFLKSLPAL- 152
Y+ ++R+ T+ + RK A++ L H+G D SG IW +YI F++S P
Sbjct: 328 VYLDYVRR-RNPLSTDTTGQARKVISSAYELALQHIGMDKESGSIWADYIQFIRSGPGNV 386
Query: 153 --NAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYT 210
+ ++ Q+M +RKAYQRA+ P V LWK+Y+ FE +++ + L E Y
Sbjct: 387 GGSGWQDQQKMDLLRKAYQRAICVPMQAVNTLWKEYDQFEMGLNKLTGRKFLQEQSPSYM 446
Query: 211 SARAVYRERKKYCEEIDWNMLA-VPPT----GSYKEEQQWIAWKRLLTFEKGNP---QRI 262
+AR+ Y E + + +++ L +PP G ++ QQ WKR + +EKG+P +
Sbjct: 447 TARSSYTELQNFTRDLNRTTLPRLPPVPGSEGDFEYLQQIEIWKRWINWEKGDPLVLKED 506
Query: 263 DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEML 322
D + R+++ Y+Q LM L P+IW++ A + + + + + A P+S +L
Sbjct: 507 DLTAYKGRVVYVYKQALMALRFLPEIWFEAADFCFLNDMETEGNEFLKNGIDANPESCLL 566
Query: 323 RYAFAE 328
+ A+
Sbjct: 567 AFKRAD 572
Score = 185 (70.2 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 71/257 (27%), Positives = 115/257 (44%)
Query: 246 IAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-GSIDA 304
+A+KR E + D ++ Y++ L LY D+ T A+ ++
Sbjct: 566 LAFKRADRLEITSESEQDPIKRGAKVREPYDRLLDALY---DLIAKARTREAQDVARLEE 622
Query: 305 AIKVFQRALKALPDSEMLRYAFAELEES-RGA-IAAAKKLYESLLTDSVNTTALAHIQFI 362
K+ A D + + + +ES + A I A + + + T + A I +
Sbjct: 623 TFKLRPDTQPAANDDDDDDQSETKAKESVKNAQIEAVRHAHSIQIGILSKTVSFAWIALM 682
Query: 363 RFLRRTEG------VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAG 416
R +RR +G V +R+ F DARK T VY+A AL+ + KDP A +FE G
Sbjct: 683 RAMRRIQGKGKPGEVPGSRQVFADARKRGRITSDVYIASALIEYHCYKDPA-ATKIFERG 741
Query: 417 LKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP--PE---ESIEVWKRFTQFEQ 471
K F + + LEY L +ND N RA+FE + L PE ++ ++ ++E
Sbjct: 742 AKLFPEDENFALEYLKHLIDINDIINARAVFEMTVRKLAANPENVHKTKPIFAFLHEYES 801
Query: 472 MYGDLDSTLKVEQRRKE 488
YGDL + +E R +E
Sbjct: 802 RYGDLVQVINLETRMRE 818
Score = 61 (26.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 26/133 (19%), Positives = 51/133 (38%)
Query: 63 WKQYVEAYMAVNNDDATKQLFSRCLLIC-LQVPLWRCYIRFIRKVYEKKGTEGQEETRKA 121
W + + + + N D+ + ++ R L + L +W Y ++ E E +
Sbjct: 259 WLELINEHRSRNRIDSARDVYERFLKVFPLSAEMWVAYATMESELNELFRLE------QI 312
Query: 122 FDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV--VTPTHHV 179
F+ L I + +W Y+ +++ L+ Q I AY+ A+ +
Sbjct: 313 FNRTLL----TIPAVQLWTVYLDYVRRRNPLSTDTTGQARKVISSAYELALQHIGMDKES 368
Query: 180 EQLWKDYENFENS 192
+W DY F S
Sbjct: 369 GSIWADYIQFIRS 381
Score = 40 (19.1 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 723 DDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSAS 760
DDD+ QS+ + ++ + Q++ R A S Q G S
Sbjct: 636 DDDDDD--QSETKAKESVKNAQIEAVRHAHSIQIGILS 671
>UNIPROTKB|E9PLP8 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AC131263 HGNC:HGNC:2485
IPI:IPI00982702 ProteinModelPortal:E9PLP8 SMR:E9PLP8
Ensembl:ENST00000524827 ArrayExpress:E9PLP8 Bgee:E9PLP8
Uniprot:E9PLP8
Length = 185
Score = 242 (90.2 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 46/129 (35%), Positives = 79/129 (61%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D +
Sbjct: 62 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 117
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140
+LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW+
Sbjct: 118 KLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWV 176
Query: 141 EYITFLKSL 149
+YI FLK +
Sbjct: 177 DYINFLKGV 185
>UNIPROTKB|I3LMS1 [details] [associations]
symbol:I3LMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00390000006758
EMBL:FP565602 Ensembl:ENSSSCT00000031850 Uniprot:I3LMS1
Length = 118
Score = 232 (86.7 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 40/100 (40%), Positives = 66/100 (66%)
Query: 91 LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLP 150
L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI FLK +
Sbjct: 4 LHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE 62
Query: 151 ALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFE 190
A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E
Sbjct: 63 AVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYE 102
>UNIPROTKB|Q86UA1 [details] [associations]
symbol:PRPF39 "Pre-mRNA-processing factor 39" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
EMBL:AL121809 CTD:55015 HOGENOM:HOG000010277 HOVERGEN:HBG082194
KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9 EMBL:AK001990 EMBL:BC051886
EMBL:BC125126 EMBL:BC125127 IPI:IPI00789246 IPI:IPI00878754
RefSeq:NP_060392.3 UniGene:Hs.274337 ProteinModelPortal:Q86UA1
SMR:Q86UA1 IntAct:Q86UA1 STRING:Q86UA1 PhosphoSite:Q86UA1
DMDM:223590245 PaxDb:Q86UA1 PRIDE:Q86UA1 Ensembl:ENST00000355765
GeneID:55015 KEGG:hsa:55015 UCSC:uc001wvy.4 UCSC:uc001wwa.1
GeneCards:GC14P045553 H-InvDB:HIX0011621 HGNC:HGNC:20314
HPA:HPA001176 MIM:614907 neXtProt:NX_Q86UA1 PharmGKB:PA142671127
InParanoid:Q86UA1 GenomeRNAi:55015 NextBio:58381
ArrayExpress:Q86UA1 Bgee:Q86UA1 CleanEx:HS_PRPF39
Genevestigator:Q86UA1 GermOnline:ENSG00000185246 Uniprot:Q86UA1
Length = 669
Score = 163 (62.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 71/280 (25%), Positives = 126/280 (45%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 349 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 400
Query: 301 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359
SI+ VF RA LP M+ +A EE +G I A+ + ++ + V A+ +
Sbjct: 401 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILKTF-EECVLGLAMVRL 459
Query: 360 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 415
+ + RR +E A DA KS N + V A F K+ PK + EA
Sbjct: 460 RRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEA 519
Query: 416 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 470
+ + Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F
Sbjct: 520 IERDKENTKLYLNLLEMEYSGDLKQ--NEENILNCFDKAVHGSLPIKMRITFSQRKVEFL 577
Query: 471 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 503
+ +G D++ L + +++L R E G+ E+
Sbjct: 578 EDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 617
Score = 116 (45.9 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 44/171 (25%), Positives = 77/171 (45%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQV 93
HL A+ A +++ +P + +WK+Y + +N + +++ R L I L V
Sbjct: 110 HLMAARKA--FDRFFIHYP----YCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSV 163
Query: 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALN 153
LW YI F+++ + E R F+ + G+D S +W YI + N
Sbjct: 164 DLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWE------N 217
Query: 154 AQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 200
Q + + AI Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 218 EQGNLREVTAI---YDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 262
Score = 43 (20.2 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 156 EESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFE 190
E+ ++A RKA+ R + + WK Y + E
Sbjct: 106 EQENHLMAARKAFDRFFIHYPY-CYGYWKKYADLE 139
>UNIPROTKB|F1PV57 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 CTD:55015 GeneTree:ENSGT00390000005033 KO:K13217
OMA:GWVYLLQ EMBL:AAEX03005706 RefSeq:XP_851059.2
Ensembl:ENSCAFT00000022300 GeneID:480305 KEGG:cfa:480305
Uniprot:F1PV57
Length = 667
Score = 162 (62.1 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 70/280 (25%), Positives = 125/280 (44%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 347 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 398
Query: 301 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359
SI+ VF RA LP M+ +A EE +G I A+ + + + V A+ +
Sbjct: 399 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTF-EECVLGLAMVRL 457
Query: 360 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 415
+ + RR +E A DA KS N + + A F K+ PK + EA
Sbjct: 458 RRVSLERRHGNMEEAEHLLQDAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 517
Query: 416 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 470
+ + Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F
Sbjct: 518 IERDKENTKLYLNLLEMEYSGDLKQ--NEENILNCFDKAIHGSLPIKMRITFSQRKVEFL 575
Query: 471 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 503
+ +G D++ L + +++L R E G+ E+
Sbjct: 576 EDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 615
Score = 116 (45.9 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 44/171 (25%), Positives = 77/171 (45%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQV 93
HL A+ A +++ +P + +WK+Y + +N + +++ R L I L V
Sbjct: 108 HLMAARKA--FDKFFIHYP----YCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSV 161
Query: 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALN 153
LW YI F+++ + E R F+ + G+D S +W YI + N
Sbjct: 162 DLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDRLWEMYINWE------N 215
Query: 154 AQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 200
Q + + AI Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 216 EQGNLREVTAI---YDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 260
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 142 (55.0 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 62/275 (22%), Positives = 124/275 (45%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ Q WK L FE N +++R++ +E+C++ Y D W YA + ++
Sbjct: 309 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEDFWIKYAKY-MENH 360
Query: 301 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359
SI+ V+ RA LP M+ +A EE +G I A+++ ++ + + A+ +
Sbjct: 361 SIEGVRHVYSRACTIHLPKKPMVHMLWAAFEEQQGNIDEARRILKTF-EECILGLAMVRL 419
Query: 360 QFIRFLRRTEGVEAARKYFLDA-RKSPNFTYHVYVAYALMA--FCQDKDPKLAHNVFEAG 416
+ + RR +E A + +A R + + + + A L F K+ A V
Sbjct: 420 RRVSLERRHGNMEEAERLLEEAVRNAKSVSESSFYAIKLARHLFKVQKNLPKARKVLSDA 479
Query: 417 LKRFMHEPA-YI----LEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVWKRFTQFE 470
++ Y+ +EY L++ ++ NI + F++A++ SL + + +R +F
Sbjct: 480 IEIDKENTKLYLNLLEMEYCGDLTQ--NEENILSCFDKAVNGSLSIKMRVTFSQRKVEFL 537
Query: 471 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGA 498
+ +G D++ L + ++ L R E G+
Sbjct: 538 EDFGSDVNKLLDAYDEHQALLKEQDTLKRRAENGS 572
Score = 135 (52.6 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 43/174 (24%), Positives = 78/174 (44%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQV 93
HLP A+ A +++ + +P + +WK+Y + +N + +++ R L I L V
Sbjct: 70 HLPAARKA--FDKFFTHYP----YCYGYWKKYADLERRHDNIKQSDEVYRRGLQAIPLSV 123
Query: 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALN 153
LW YI F++ + E R A++ + G+D S +W YI N
Sbjct: 124 DLWIHYINFLKDTLDPDDPEANSTIRGAYEHAVLAAGTDFRSDRLWEMYI---------N 174
Query: 154 AQEESQRMIAIRKAYQRAVVTPTHHVEQLWKD-YENFENSVSRQLAKGLLSEYQ 206
++E + + Y R + PT QL+ ++ F++ V L + LL+ Q
Sbjct: 175 WEDEQGNLREVTSIYDRILGIPT----QLYSHHFQRFKDHVQNNLPRDLLTSEQ 224
Score = 42 (19.8 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 736 PRDFFRIRQMKKARGAASSQTGSASYGSAVSGD 768
PRD Q + R +S G A G A +GD
Sbjct: 216 PRDLLTSEQFIQLRRELASVNGHAG-GDASAGD 247
>RGD|1308702 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
Length = 664
Score = 158 (60.7 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 71/280 (25%), Positives = 123/280 (43%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 346 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 397
Query: 301 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359
SI+ VF RA LP M +A EE +G I A+ + + + V A+ +
Sbjct: 398 SIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTF-EECVLGLAMVRL 456
Query: 360 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 415
+ + RR +E A DA KS N + + A F K+ PK + EA
Sbjct: 457 RRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 516
Query: 416 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 470
K + Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F
Sbjct: 517 IEKDKENTKLYLNLLEMEYSCDLKQ--NEENILNCFDKAIHGSLPIKMRITFSQRKVEFL 574
Query: 471 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 503
+ +G D++ L + ++ L R E G+ E+
Sbjct: 575 EDFGSDVNKLLNAYDEHQTLLKEQDTLKRKAENGSEEPEE 614
Score = 118 (46.6 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQV 93
HL A+ A +++ +P + +WK+Y + +N + +++ R L I L V
Sbjct: 107 HLMAARKA--FDKFFIHYP----YCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSV 160
Query: 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALN 153
LW YI F+++ + E R F+ + G+D S +W YI N
Sbjct: 161 DLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDKLWEMYI---------N 211
Query: 154 AQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 200
+ E + + Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 212 WENEQGNLREVTAVYDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 259
>MGI|MGI:104602 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog
(yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 MGI:MGI:104602 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
HOGENOM:HOG000010277 HOVERGEN:HBG082194 OrthoDB:EOG49GKG9
EMBL:AK017379 EMBL:AK154170 EMBL:AK168462 EMBL:BC029153
IPI:IPI00170040 IPI:IPI00761305 UniGene:Mm.283339
ProteinModelPortal:Q8K2Z2 SMR:Q8K2Z2 STRING:Q8K2Z2
PhosphoSite:Q8K2Z2 PaxDb:Q8K2Z2 PRIDE:Q8K2Z2 UCSC:uc007nqw.1
UCSC:uc007nra.1 InParanoid:Q8K2Z2 ChiTaRS:PRPF39
Genevestigator:Q8K2Z2 GermOnline:ENSMUSG00000035597 Uniprot:Q8K2Z2
Length = 665
Score = 155 (59.6 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 69/273 (25%), Positives = 120/273 (43%)
Query: 248 WKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIK 307
WK L FE N +++R++ +E+C++ Y + W YA + ++ SI+
Sbjct: 354 WKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENHSIEGVRH 405
Query: 308 VFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366
VF RA LP M +A EE +G I A+ + + + V A+ ++ + R
Sbjct: 406 VFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTF-EECVLGLAMVRLRRVSLER 464
Query: 367 RTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEAGLKRFMH 422
R +E A DA KS N + + A F K+ PK + EA K +
Sbjct: 465 RHGNMEEAEHLLQDAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKEN 524
Query: 423 EPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFEQMYG-DL 476
Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F + +G D+
Sbjct: 525 TKLYLNLLEMEYSCDLKQ--NEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDV 582
Query: 477 DSTLKVEQ------RRKEALSRTGEEGASALED 503
+ L + ++ L R E G+ E+
Sbjct: 583 NKLLNAYDEHQTLLKEQDTLKRKAENGSEEPEE 615
Score = 120 (47.3 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 43/171 (25%), Positives = 75/171 (43%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQV 93
HL A+ A +++ +P + +WK+Y + +N + +++ R L I L V
Sbjct: 108 HLMAARKA--FDKFFVHYP----YCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSV 161
Query: 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALN 153
LW YI F+++ E E R F+ + G+D S +W YI N
Sbjct: 162 DLWIHYINFLKETLEPGDQETNTTIRGTFEHAVLAAGTDFRSDKLWEMYI---------N 212
Query: 154 AQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 200
+ E + + Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 213 WENEQGNLREVTAVYDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 260
>UNIPROTKB|F1SI15 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00390000005033 OMA:GWVYLLQ EMBL:CU570961
Ensembl:ENSSSCT00000005511 Uniprot:F1SI15
Length = 667
Score = 162 (62.1 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 69/280 (24%), Positives = 126/280 (45%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 348 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 399
Query: 301 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359
SI+ VF RA LP M+ +A EE +G I A+ + + + V A+ +
Sbjct: 400 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTF-EECVLGLAMVRL 458
Query: 360 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 415
+ + RR +E A + DA K+ N + + A F K+ PK + EA
Sbjct: 459 RRVSLERRHGNMEEAERLLQDAIKNAKANNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 518
Query: 416 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 470
+ + Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F
Sbjct: 519 IERDKENTKLYLNLLEMEYSGDLKQ--NEENILNCFDKAIHGSLPIKMRITFSQRKVEFL 576
Query: 471 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 503
+ +G D++ L + +++L R E G+ E+
Sbjct: 577 EDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 616
Score = 112 (44.5 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 43/171 (25%), Positives = 77/171 (45%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQV 93
HL A+ A +++ +P + +WK+Y + +N + +++ R L I L V
Sbjct: 108 HLMAARKA--FDKFFIHYP----YCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSV 161
Query: 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALN 153
LW YI F+++ + E + F+ + G+D S +W YI + N
Sbjct: 162 DLWIHYINFLKETLDPGDPETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWE------N 215
Query: 154 AQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 200
Q + + AI Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 216 EQGNLREVTAI---YDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 260
>UNIPROTKB|A8E4M9 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
CTD:55015 GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9
eggNOG:NOG298273 EMBL:DAAA02052958 EMBL:BC149776 IPI:IPI00710325
RefSeq:NP_001103259.1 UniGene:Bt.27128 Ensembl:ENSBTAT00000003373
GeneID:505547 KEGG:bta:505547 InParanoid:A8E4M9 NextBio:20867193
Uniprot:A8E4M9
Length = 548
Score = 165 (63.1 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 71/280 (25%), Positives = 127/280 (45%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 228 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 279
Query: 301 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359
SI+ VF RA LP M+ +A EE +G I A+ + + + V A+ +
Sbjct: 280 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTF-EECVLGLAMVRL 338
Query: 360 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 415
+ + RR +E A + +A KS N + + A F K+ PK + EA
Sbjct: 339 RRVSLERRHGNMEEAERLLQEAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 398
Query: 416 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 470
+ + Y+ +EY+ L + N+D NI F++A+ SLP + I +R +F
Sbjct: 399 IERDKENTKLYLNLLEMEYSGDLKQ-NED-NILNCFDKAIHGSLPIKMRITFSQRKVEFL 456
Query: 471 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 503
+ +G D++ L + +++L R E G+ E+
Sbjct: 457 EDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 496
Score = 100 (40.3 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 36/128 (28%), Positives = 59/128 (46%)
Query: 78 ATKQLFSRCL-LICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG 136
+T+ ++ R L I L V LW YI F+++ + E R F+ + G+D S
Sbjct: 26 STQMVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTVRGTFEHAVLAAGTDFRSD 85
Query: 137 PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENS 192
+W YI + N Q + + AI Y R + PT HH ++ +KD+ +N+
Sbjct: 86 RLWEMYINWE------NEQGNLREVTAI---YDRILGIPTQLYSHHFQR-FKDH--VQNN 133
Query: 193 VSRQLAKG 200
+ R L G
Sbjct: 134 LPRDLLTG 141
>ASPGD|ASPL0000046692 [details] [associations]
symbol:AN1635 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 EMBL:BN001307
GO:GO:0005622 GO:GO:0006396 eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AACD01000026 KO:K13217 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 RefSeq:XP_659239.1 ProteinModelPortal:Q5BCU5
EnsemblFungi:CADANIAT00008273 GeneID:2874721 KEGG:ani:AN1635.2
Uniprot:Q5BCU5
Length = 588
Score = 199 (75.1 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 99/441 (22%), Positives = 180/441 (40%)
Query: 44 IYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYIRF 102
+Y++ L+ FP + +WK+Y + ++ +A ++ R + I V LW Y F
Sbjct: 62 VYDRFLAKFP----LLFGYWKKYADLEFSITGTEAADMVYERGVASISSSVDLWTNYCTF 117
Query: 103 IRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLP------ALNAQE 156
+ + + + R+ F+ + VG D S P W +YI + + + A+ A+
Sbjct: 118 -----KAETSHDTDIIRELFERGANCVGLDFLSHPFWDKYIEYEERVEGYDKIFAILARV 172
Query: 157 ESQRMIAIRKAYQR----------AVVTPTHHVEQLWKDYE----------NFENSVSRQ 196
M + ++R A + P + + Q D + + + R
Sbjct: 173 IEIPMHQYARYFERYRQLAQTRPVAELAPPNVISQFRADLDAAAGIVAPGAKADAEIERD 232
Query: 197 LAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK 256
L L + ++ + +R Y EI V +E Q W++ L FE+
Sbjct: 233 LRLRLDGYHLEIFSKTQTETTKRWTYESEIKRPYFHVTEL----DEGQLANWRKYLDFEE 288
Query: 257 GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW-NAKSGSIDAAIKVFQRALKA 315
S RI F YE+CL+ HY + W YA W +A+ G + ++QRA
Sbjct: 289 AE-------GSYARIQFLYERCLVTCAHYDEFWQRYARWMSAQPGKEEDVRNIYQRASYL 341
Query: 316 -LPDSE-MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEA 373
+P + R +A EE G ++ AK+++E++L + N + RR G+EA
Sbjct: 342 YVPIANPATRLQYAYFEEMCGRVSVAKEIHEAILINIPNHVETI-VSLANMCRRHGGLEA 400
Query: 374 ARKYF---LDARKSPNFTYHVYVA-YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE 429
A + + LD+ + T VA +A + + + A VF+ + ++ A+
Sbjct: 401 AIEVYKSQLDSPQCEMSTKAALVAEWARLLWKIKGSTEEARQVFQKNQQYYLDSQAFWHS 460
Query: 430 YADF-LSRLNDDRNIRALFER 449
Y F L + A +ER
Sbjct: 461 YLTFELDQPTSAATESAQYER 481
>DICTYBASE|DDB_G0291836 [details] [associations]
symbol:DDB_G0291836 "Squamous cell carcinoma antigen
recognized by T-cells 3" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
dictyBase:DDB_G0291836 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AAFI02000185
eggNOG:COG5107 OMA:SQAVMKM RefSeq:XP_629950.1
ProteinModelPortal:Q54E37 EnsemblProtists:DDB0191602 GeneID:8628356
KEGG:ddi:DDB_G0291836 InParanoid:Q54E37 Uniprot:Q54E37
Length = 949
Score = 173 (66.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 70/281 (24%), Positives = 118/281 (41%)
Query: 46 EQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDA-TKQLFSRCLLICLQVPLWRCYIRFIR 104
E+ S+ P + I W + YM +ND L+ + L + V + Y +FI
Sbjct: 118 EKFQSIHPLSQD-IWLAWFSDEQKYMKTDNDKQYILSLYEKALNDFISVKINVSYCKFII 176
Query: 105 KVYEKKG--TEGQEETRKAFDFMLSHVGSDISSGPI-WLEYITFLKSLPA-LNAQEESQR 160
K+ G +E RK F+ L G DI P+ W EY F + L + + +E Q
Sbjct: 177 KINTNSGGLINNVKEIRKQFERSLEQCGDDIIESPLLWSEYRMFEQMLLSQIKDDKEKQT 236
Query: 161 MIAI-RKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRER 219
I I R Y R + P + ++ DY+ +E+S S + + + +E
Sbjct: 237 QIKIIRDLYHRQLSNPMIGLHSIYNDYQQWEHSQSIDNNNNNNNNQEKEKEEKEKEEKEI 296
Query: 220 KKYCEEIDWNMLAVPPTGSYKEEQQWI---AWKRLLTFEKGNPQRIDTASSNKRIIFTYE 276
K E+ P +E++++ WK + FEK Q D R+ +E
Sbjct: 297 KLKFEKSLKQFKEREPFEIALKEKKYLDQRKWKEYIEFEK-QQQHNDKPM---RVATLFE 352
Query: 277 QCLMYLYHYPDIWYDYATWNAKSGSI-DAAIKVFQRALKAL 316
+ L ++ IW Y T+ K + D +KVF R+L+++
Sbjct: 353 RQLKSFSNHFSIWSFYLTYLEKFTNFKDLHLKVFSRSLRSI 393
Score = 73 (30.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 429 EYADFLSRLNDDRNIRALFERALSSLPPEE-SIEVWKRFTQFEQMYGDLDSTLKVEQRRK 487
+Y F +++R LF++A S + ++ S +W+ + FE+ YGD++ V R
Sbjct: 572 QYISFEMEQKQFQSVRELFKKASSHIRFDDPSSRIWQDWFTFERGYGDINQYRAVSDRYS 631
Query: 488 EALSRTGEEGASALEDSLQ 506
++ +E L+ Q
Sbjct: 632 IIQNKYNKEQERYLQQQQQ 650
>POMBASE|SPBC4B4.09 [details] [associations]
symbol:usp105 "U1 snRNP-associated protein Usp105"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC;ISO] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0030627 "pre-mRNA 5'-splice site binding" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 PomBase:SPBC4B4.09 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0457 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 PIR:T40481 RefSeq:NP_596426.1
ProteinModelPortal:O74970 EnsemblFungi:SPBC4B4.09.1 GeneID:2540869
KEGG:spo:SPBC4B4.09 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 NextBio:20801985 Uniprot:O74970
Length = 612
Score = 142 (55.0 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 35/111 (31%), Positives = 60/111 (54%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW-NAKS 299
+E Q + W++ L FE + +RI YE+CL+ Y + W+ YA W +A+
Sbjct: 278 DEAQLVNWRKYLDFE-------EVEGDFQRICHLYERCLITCALYDEFWFRYARWMSAQP 330
Query: 300 GSIDAAIKVFQRA--LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348
++ +++RA + A +R +A EES+G IA+AK +Y+S+LT
Sbjct: 331 DHLNDVSIIYERASCIFASISRPGIRVQYALFEESQGNIASAKAIYQSILT 381
Score = 98 (39.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 38/171 (22%), Positives = 72/171 (42%)
Query: 44 IYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYIRF 102
+Y++ L +P + +WK+Y + V +A++ ++ R + I V LW Y F
Sbjct: 60 VYDRFLGKYP----LLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAF 115
Query: 103 IRKVYEKKGTEGQ-EETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRM 161
K T G E R+ F + VG D S P W +Y+ F +E +R
Sbjct: 116 ------KMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEF---------EERQERP 160
Query: 162 IAIRKAYQRAVVTPTHHVEQLWKDYENFENS--VSRQLAKGLLSEYQSKYT 210
+ + +R + P H + ++ + S + + L +L+ ++ T
Sbjct: 161 DNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQLLPPDVLASIRADVT 211
Score = 91 (37.1 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 57/280 (20%), Positives = 103/280 (36%)
Query: 248 WKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIK 307
W R + P ++ S II+ C+ P I YA + G+I +A
Sbjct: 319 WFRYARWMSAQPDHLNDVS----IIYERASCIFASISRPGIRVQYALFEESQGNIASAKA 374
Query: 308 VFQRALKALPDSEMLRYAFAELEESRGA---IAAAKKLYESLLTDSVNTTALAHI---QF 361
++Q L LP + + LE + A + S++ + T + + +
Sbjct: 375 IYQSILTQLPGNLEAVLGWVGLERRNAPNYDLTNAHAVLRSIINEGKCNTGITEVLITED 434
Query: 362 IRFLRRTEG-VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK--LAH-----NVF 413
I+ + + EG +E AR FL + H ++++ Q + K H NV
Sbjct: 435 IKLVWKIEGDIELARNMFLQNAPALLDCRHFWISFLRFELEQPLNSKNYTEHHARVSNVM 494
Query: 414 EAGLKRFMHEPAYILEYAD-FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 472
E + P I++ ++ L N ++ + L +V+ F+ E
Sbjct: 495 EMIRNKTRLPPRTIMDLTKLYMEYLCHQSNDPSVLQEYLLI-----DRDVFGPFSVRESH 549
Query: 473 YGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRY 512
+ LD ++Q LS G G S E ++ S Y
Sbjct: 550 WKKLDEGQDLKQVSTRLLSTNGHPGISVNEAKIKSGESPY 589
Score = 37 (18.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 29 LANSALHLPVAQAAPIYEQLLSV 51
L +H+P+ Q A +E+ + V
Sbjct: 166 LLERLIHIPLHQYARYFERFVQV 188
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 175 (66.7 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 63/238 (26%), Positives = 113/238 (47%)
Query: 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKL 342
Y +W YA + ++ S++ A V+ RA+K LP + Y + +EE G I A+K+
Sbjct: 103 YRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKI 162
Query: 343 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR----KYFLDARKSPNFTYHVYVAYALM 398
+E + S + A + FI+F R +E +R ++ L K+ +F + YA
Sbjct: 163 FERWMDWSPDQQAW--LCFIKFELRYNEIERSRSIYERFVLCHPKASSF-----IRYAKF 215
Query: 399 AFCQDKDPKLAHNVFEAGLKRF--MHEPAYIL--EYADFLSRLNDDRNIRALFERALSSL 454
++ LA V+E ++ + E A ++ +A+F + R L++ AL +
Sbjct: 216 EM-KNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHI 274
Query: 455 PPEESIEVWKRFTQFEQMYGDLDSTLK-VEQRRKEALSRTGEEGASALE-DSLQDVVS 510
P + +++K+F FE+ YG+ + + RRK L GE + L DS D +S
Sbjct: 275 PKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRK--LQYEGEVRKNPLNYDSWFDYIS 330
Score = 128 (50.1 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 90/365 (24%), Positives = 158/365 (43%)
Query: 119 RKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHH 178
RK F+ + G+ +S +W+ Y + +S Q++ R R ++RA+ ++
Sbjct: 57 RKEFEDQIR--GAKTNS-QVWVRYADWEES------QKDHDRA---RSVWERALEDESYR 104
Query: 179 VEQLWKDYENFE-NSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTG 237
LW Y FE + S A+ + K + + + EEI N+ G
Sbjct: 105 NHTLWLKYAEFEMRNKSVNHARNVWDR-AVKILPRVDQFWYKYIHMEEILGNI-----DG 158
Query: 238 SYKEEQQWIAW----KRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYA 293
+ K ++W+ W + L F K R + ++ I YE+ ++ + + YA
Sbjct: 159 ARKIFERWMDWSPDQQAWLCFIKFE-LRYNEIERSRSI---YERFVL-CHPKASSFIRYA 213
Query: 294 TWNAKSGSIDAAIKVFQRALKALPD----SEMLRYAFAELEESRGAIAAAKKLYESLLTD 349
+ K+ + A V++RA++ L D +EM+ AFAE EE + A+ LY+ L
Sbjct: 214 KFEMKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDH 273
Query: 350 SVNTTAL-AHIQFIRFLRR---TEGVEAA----RK--YFLDARKSPNFTYHVYVAY-ALM 398
A + +F+ F ++ EG++ A RK Y + RK+P Y + Y +L
Sbjct: 274 IPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNP-LNYDSWFDYISLE 332
Query: 399 AFCQDKD------PKLAHNVFEAGLKRFMHEPAYI-LEYADFLSRLNDD-RNIRALFERA 450
DKD + NV A KR+ Y+ ++YA F L +D RA++
Sbjct: 333 ETLGDKDRIREVYERAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAVYREC 392
Query: 451 LSSLP 455
L+ +P
Sbjct: 393 LNLIP 397
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 178 (67.7 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 54/205 (26%), Positives = 97/205 (47%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
+E+ L Y +W YA + K+ ++ A V+ R++ LP + L + +EE G
Sbjct: 101 WERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLG 160
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 393
+ A++++E + S + A + FI+F R +E AR Y P + ++
Sbjct: 161 NVTGARQIFERWMNWSPDQKAW--LCFIKFELRYNEIERARSIYERFVLCHPKVS--AFI 216
Query: 394 AYALMAFCQDKDPKLAHNVFEAGLKRFMH-EPAYIL--EYADFLSRLNDDRNIRALFERA 450
YA + KLA V+E + + + E A IL +A+F R + R +++ A
Sbjct: 217 RYAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFA 276
Query: 451 LSSLPPEESIEVWKRFTQFEQMYGD 475
L + + E++K+F FE+ YGD
Sbjct: 277 LDHIRKGRAEELYKKFVAFEKQYGD 301
Score = 122 (48.0 bits), Expect = 0.00074, P = 0.00074
Identities = 103/450 (22%), Positives = 181/450 (40%)
Query: 63 WKQYVEAYMAVNNDDATKQLFSRCLLICLQVP-LWRCYIRFIRKVYEKKGTEGQEETRKA 121
W +Y E M + + ++ R + + +V LW YI K+ G R+
Sbjct: 115 WVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGA------RQI 168
Query: 122 FDFMLSHVGSDISSGPIWLEYITF-LKSLPALNAQEESQRMIAIR---KAYQRAVVTPTH 177
F+ ++ D + WL +I F L+ A+ +R + A+ R
Sbjct: 169 FERWMNW-SPDQKA---WLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIRYAKFEMK 224
Query: 178 HVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDW-NMLAVPPT 236
Q+ E +E +V + LA E + + S A + ER K E + A+
Sbjct: 225 RGGQVKLAREVYERAVDK-LAND--EEAEILFVSF-AEFEERCKEVERARFIYKFALDHI 280
Query: 237 GSYKEEQQWIAWKRLLTFEK--GNPQRIDTASSNKRIIFTYE-QCLMYLYHYPDIWYDYA 293
+ E+ +K+ + FEK G+ + I+ A K+ F YE + +Y D W+DY
Sbjct: 281 RKGRAEE---LYKKFVAFEKQYGDKEGIEDAIVGKKR-FEYEDEVSKNPLNY-DSWFDYV 335
Query: 294 TWNAKSGSIDAAIKVFQRALKALPDSEMLR-----------YAFAELEESRGAIAAAKKL 342
G+ D ++++RA+ +P ++ R YA E E++ + + +
Sbjct: 336 RLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKD-VERTRDV 394
Query: 343 YESLLTDSVNTT-ALAHIQFI--RFLRRTEGVEAARKYFLDA-RKSPNFT-YHVYVAYAL 397
Y L +T + A I + + R + AR+ +A K+P + Y+ L
Sbjct: 395 YRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVKIFKKYIEMEL 454
Query: 398 MAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE-YADFLSRLNDDRNIRALFERALSSLPP 456
D+ KL E + E Y YA+F L + RA+FE A+S P
Sbjct: 455 KLVNIDRCRKLYERFLE-----WSPENCYAWRNYAEFEISLAETERARAIFELAISQ-PA 508
Query: 457 EESIEV-WKRFTQFEQMYGDLDSTLKVEQR 485
+ E+ WK + FE G+ + T + +R
Sbjct: 509 LDMPELLWKTYIDFEISEGEFEKTRALYER 538
>UNIPROTKB|D4A0B1 [details] [associations]
symbol:D4A0B1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 IPI:IPI00951935
Ensembl:ENSRNOT00000065090 ArrayExpress:D4A0B1 Uniprot:D4A0B1
Length = 426
Score = 123 (48.4 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 48/180 (26%), Positives = 78/180 (43%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 228 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 279
Query: 301 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359
SI+ VF RA LP M +A EE +G I A+ + + + V A+ +
Sbjct: 280 SIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTF-EECVLGLAMVRL 338
Query: 360 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 415
+ + RR +E A DA KS N + + A F K+ PK + EA
Sbjct: 339 RRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 398
Score = 99 (39.9 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 34/128 (26%), Positives = 57/128 (44%)
Query: 78 ATKQLFSRCL-LICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG 136
+T+ ++ R L I L V LW YI F+++ + E R F+ + G+D S
Sbjct: 26 STQMVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSD 85
Query: 137 PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENS 192
+W YI N + E + + Y R + PT HH ++ +K E+ +N+
Sbjct: 86 KLWEMYI---------NWENEQGNLREVTAVYDRILGIPTQLYSHHFQR-FK--EHVQNN 133
Query: 193 VSRQLAKG 200
+ R L G
Sbjct: 134 LPRDLLTG 141
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 177 (67.4 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 53/205 (25%), Positives = 98/205 (47%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
+E+ + Y +W YA + K+ +++A V+ RA+ LP + L Y + +EE G
Sbjct: 115 WERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILG 174
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 393
IA A++++E + S + + FI+F R +E AR Y P + Y+
Sbjct: 175 NIAGARQIFERWMDWSPDQQGW--LSFIKFELRYNEIERARTIYERFVLCHPKVS--AYI 230
Query: 394 AYALMAFCQDKDPKLAHNVFEAGLKRFMH-EPAYIL--EYADFLSRLNDDRNIRALFERA 450
YA + + +V+E ++ E A IL +A+F R + R +++ A
Sbjct: 231 RYAKFEM-KGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFA 289
Query: 451 LSSLPPEESIEVWKRFTQFEQMYGD 475
L +P + +++++F FE+ YGD
Sbjct: 290 LDHIPKGRAEDLYRKFVAFEKQYGD 314
Score = 129 (50.5 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 65/257 (25%), Positives = 110/257 (42%)
Query: 248 WKRLLTFEK--GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAA 305
+++ + FEK G+ + I+ A KR F YE + D W+DY G+ D
Sbjct: 302 YRKFVAFEKQYGDKEGIEDAIVGKRR-FQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRI 360
Query: 306 IKVFQRALKALPDSEMLRY---------AFAELEESRGA-IAAAKKLYES---LLTDSVN 352
++++RA+ +P +E RY +A EE I + +Y L+ S
Sbjct: 361 REIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKF 420
Query: 353 TTALAHIQFIRFLRRTEGVEAARKYFLDA-RKSP-NFTYHVYVAYALMAFCQDKDPKLAH 410
+ A + +F R + AR+ +A K+P + + Y+ L D+ KL
Sbjct: 421 SFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYE 480
Query: 411 NVFEAGLKRFMHEPAYIL-EYADFLSRLNDDRNIRALFERALSSLPPEESIEV-WKRFTQ 468
E + E Y +YA+ L + RA+FE A+S P + E+ WK +
Sbjct: 481 RYLE-----WSPENCYAWSKYAELERSLVETERARAIFELAISQ-PALDMPELLWKAYID 534
Query: 469 FEQMYGDLDSTLKVEQR 485
FE G+L+ T + +R
Sbjct: 535 FEISEGELERTRALYER 551
Score = 53 (23.7 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 113 EGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV 172
E Q++ +A + D + +WL+Y F + +++ + + R + RAV
Sbjct: 103 ESQKDYARARSVWERAIEGDYRNHTLWLKYAEF---------EMKNKFVNSARNVWDRAV 153
Query: 173 VTPTHHVEQLWKDYENFE 190
T V+QLW Y + E
Sbjct: 154 -TLLPRVDQLWYKYIHME 170
Score = 47 (21.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/65 (18%), Positives = 29/65 (44%)
Query: 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWR 97
V A ++++ +++ P + + W +Y+ + N +Q+F R + W
Sbjct: 142 VNSARNVWDRAVTLLPR----VDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWL 197
Query: 98 CYIRF 102
+I+F
Sbjct: 198 SFIKF 202
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 177 (67.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 59/211 (27%), Positives = 99/211 (46%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 209 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 268
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK--YFLDARKSPNFTY-HV 391
IA A++++E + A H +I F R + V+ AR YFL+ SP H
Sbjct: 269 NIAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYYFLN---SPELVLVHP 323
Query: 392 YVA-YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIR 444
V + A ++K AH V+E ++ F M E Y+ +A F + +R
Sbjct: 324 DVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVR 382
Query: 445 ALFERALSSLPPEESIEVWKRFTQFEQMYGD 475
+++ AL + +E+ E++K +T FE+ +GD
Sbjct: 383 VIYKYALDRISKQEAQELFKNYTIFEKKFGD 413
>UNIPROTKB|G4MRU5 [details] [associations]
symbol:MGG_04558 "Pre-mRNA-processing factor 39"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:CM001231 KO:K13217
RefSeq:XP_003710923.1 ProteinModelPortal:G4MRU5
EnsemblFungi:MGG_04558T0 GeneID:2677921 KEGG:mgr:MGG_04558
Uniprot:G4MRU5
Length = 586
Score = 171 (65.3 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 84/371 (22%), Positives = 155/371 (41%)
Query: 2 ASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAK 61
A +P+S EN + + NS+ +A Y++ L FP +
Sbjct: 22 AEVDADPDSFENWEKLVRACEALDGGLTRNSSPQA-LATLRDAYDRFLLKFP----LLFG 76
Query: 62 FWKQYVEAYMAVNNDDATKQLFSR-CLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRK 120
+WK+Y + + ++ + ++ R C I V LW Y F + + T + R
Sbjct: 77 YWKKYADLEFTIAGPESAEMVYERGCASITNSVDLWTEYCSF-----KMETTHVPQLVRD 131
Query: 121 AFDFMLSHVGSDISSGPIWLEYITFLKSLPAL-NAQEESQRMIAI-----RKAYQR-AVV 173
F+ + VG D + P W +Y+ + + A N + QR+I I + Y+R + +
Sbjct: 132 LFERGAACVGLDFMAHPFWNKYLEYEERQEAHENIFKILQRVIHIPMYQYARYYERFSTM 191
Query: 174 TPTHHVEQLWKD--YENFENSVSRQLAK-GLLS---EYQSKYT-SARAVYRER-KKYCEE 225
T ++ + F+ + + A G+ E++ + A Y E K E
Sbjct: 192 VHTRALDDVVSAELQARFKTEIEAEAAAYGVTKTEPEFEQEMRRKVDAHYGEIFTKTQTE 251
Query: 226 ID--WNMLAVPPTGSYK----EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCL 279
+ W A + E+++ W++ L FE+ + TA F YE+CL
Sbjct: 252 VTKRWLYEAEIKRPYFHVTELEKKELSNWRKYLDFEEAEGSFVRTA-------FLYERCL 304
Query: 280 MYLYHYPDIWYDYATW-NAKSGSIDAAIKVFQRALKA-LPDSEM-LRYAFAELEESRGAI 336
+ Y + W+ YA W +A+ + ++ RA +P S +R FA EES G +
Sbjct: 305 VTCAFYDEFWFRYARWMSAQPDKTEEVRNIYLRAATIFVPISRPGIRLQFAYFEESCGRV 364
Query: 337 AAAKKLYESLL 347
A A++++ ++L
Sbjct: 365 AMAREVHNAIL 375
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 168 (64.2 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 53/207 (25%), Positives = 96/207 (46%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394
+A A++++E + A H +I F R + VE AR + + + ++
Sbjct: 164 NVAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVERARTIY-ERFVLVHPAVKNWIK 220
Query: 395 YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 448
YA ++K AH V+E ++ F M E Y+ +A F + +R +++
Sbjct: 221 YARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIYK 276
Query: 449 RALSSLPPEESIEVWKRFTQFEQMYGD 475
AL + +E+ E++K +T FE+ +GD
Sbjct: 277 YALDRISKQEAQELFKNYTIFEKKFGD 303
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 168 (64.2 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 53/207 (25%), Positives = 96/207 (46%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394
+A A++++E + A H +I F R + VE AR + + + ++
Sbjct: 164 NVAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVERARTIY-ERFVLVHPAVKNWIK 220
Query: 395 YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 448
YA ++K AH V+E ++ F M E Y+ +A F + +R +++
Sbjct: 221 YARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIYK 276
Query: 449 RALSSLPPEESIEVWKRFTQFEQMYGD 475
AL + +E+ E++K +T FE+ +GD
Sbjct: 277 YALDRISKQEAQELFKNYTIFEKKFGD 303
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 168 (64.2 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 50/207 (24%), Positives = 96/207 (46%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 120 YERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 179
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394
+A +++++E + A H +I F R + V+ AR ++ + ++
Sbjct: 180 NVAGSRQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYIALLVIVHPDVKNWIK 237
Query: 395 YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 448
YA ++K AH V+E ++ F M E Y+ +A F + +R +++
Sbjct: 238 YARF---EEKHCYFAHARKVYERAVEFFGEEHMDEHLYVA-FAKFEENQKEFERVRVIYK 293
Query: 449 RALSSLPPEESIEVWKRFTQFEQMYGD 475
AL +P +++ ++K +T FE+ +GD
Sbjct: 294 YALDRIPKQDAQNLFKNYTIFEKKFGD 320
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 166 (63.5 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 55/208 (26%), Positives = 96/208 (46%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 145 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 204
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 393
IA A++++E + A H +I F R + V+ AR Y P+ ++
Sbjct: 205 NIAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYERFVLVHPDVKN--WI 260
Query: 394 AYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALF 447
YA ++K AH V+E ++ F M E Y+ +A F + +R ++
Sbjct: 261 KYARF---EEKHGYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIY 316
Query: 448 ERALSSLPPEESIEVWKRFTQFEQMYGD 475
+ AL + +E+ E++K +T FE+ +GD
Sbjct: 317 KYALDRISKQEAQELFKNYTIFEKKFGD 344
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 165 (63.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 53/207 (25%), Positives = 94/207 (45%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 188 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 247
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394
IA A++++E + A H +I F R + V+ AR + S +
Sbjct: 248 NIAGARQVFERWMEWRPEEQAW-H-SYINFELRYKEVDRARTIYERYIHSLVLVHPDVKN 305
Query: 395 YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 448
+ A ++K AH V+E ++ F M E Y+ +A F + +R +++
Sbjct: 306 WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIYK 364
Query: 449 RALSSLPPEESIEVWKRFTQFEQMYGD 475
AL + +E+ E++K +T FE+ +GD
Sbjct: 365 YALDRISKQEAQELFKNYTIFEKKFGD 391
>WB|WBGene00017768 [details] [associations]
symbol:F25B4.5 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0009792 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0007281 EMBL:FO080538
GeneTree:ENSGT00390000005033 KO:K13217 PIR:T25725
RefSeq:NP_504495.1 ProteinModelPortal:Q22961 SMR:Q22961
STRING:Q22961 PaxDb:Q22961 EnsemblMetazoa:F25B4.5.1
EnsemblMetazoa:F25B4.5.2 GeneID:178955 KEGG:cel:CELE_F25B4.5
UCSC:F25B4.5.1 CTD:178955 WormBase:F25B4.5 eggNOG:NOG298273
HOGENOM:HOG000018990 InParanoid:Q22961 OMA:VLLELRY NextBio:903274
Uniprot:Q22961
Length = 710
Score = 118 (46.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 63/262 (24%), Positives = 113/262 (43%)
Query: 244 QWIAWKRLLTFE--KGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-G 300
Q W L FE +G+ +R+ +I+F ++CL+ Y + W YA W K+
Sbjct: 383 QLFNWMSYLDFEIKEGHEERV-------KILF--DRCLIPCSLYEEFWIKYARWTWKTYK 433
Query: 301 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 360
S + +++ +A P S L + + EES A K+ ++ + L ++
Sbjct: 434 SKTKSREIYMKAKIHCPTSLNLALSESGFEESVENFDDAIKILDNF-REEYPGYVLLELR 492
Query: 361 FIRFLRRT---EGVEAARKYFL--------DARKSPNFTYHVYVAYALMAFCQD--KDPK 407
++ LRR EG A ++ + D++ SPN H + + L + Q +DPK
Sbjct: 493 YLGVLRRKSEKEGHGAPSEFVMNQYESLIRDSQSSPNL--HSFYSLKLARYHQKSRRDPK 550
Query: 408 LAHNVFEAGLKRFMHEPAYILEYAD--FLSRLNDDRNIRALFERAL-SSLPPEESIEVWK 464
LA V + + +Y D + S + ++ F+ AL S+L E+ + +
Sbjct: 551 LAQKVLKKAISIDPFNLQLYSQYVDIAYSSESMSELDVIQSFDVALDSNLRLEDKVRFSQ 610
Query: 465 RFTQFEQMYGDLDSTLKVEQRR 486
R F + G+ + L VE R
Sbjct: 611 RKLDFLEELGN--NILAVEDHR 630
Score = 96 (38.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 41/185 (22%), Positives = 76/185 (41%)
Query: 45 YEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYIRFI 103
Y LS +P F W++Y E + N K ++ + ++ I L + LW Y +
Sbjct: 122 YRSFLSRYPNCYGF----WQKYAEYEKKMGNIAEAKAVWEKGIISIPLSIDLWLGYTADV 177
Query: 104 RKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKS--LPALNAQEESQRM 161
+ + K E R + + G + S +WLE I F ++ + L +
Sbjct: 178 KNI---KNFP-PESLRDLYARAIEIAGLEYQSDRLWLEAIGFERAVYMDELCKGNTNASC 233
Query: 162 IAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKK 221
I + + + TPT H + Y + N++ L LLS+ + + + V ++ K
Sbjct: 234 KRIGVLFDKLLSTPTFHAPSHFDRYVQYLNTIEPHL---LLSDREYEEIM-KMVCKQLGK 289
Query: 222 YCEEI 226
EE+
Sbjct: 290 SIEEL 294
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 163 (62.4 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 51/207 (24%), Positives = 97/207 (46%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L + +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 103 YERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYTYMEEMLG 162
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394
IA ++++E + A H +I F R + V+ AR + A + ++
Sbjct: 163 NIAGCRQVFERWMEWEPEEQAW-H-SYINFELRYKEVDKARSIYEKALVMVHPEVKNWIK 220
Query: 395 YALMAFCQDKDPKLAHN--VFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 448
YA ++K +A VFE ++ F + E Y+ +A F + + +R +++
Sbjct: 221 YAHF---EEKHGYVARGRKVFERAVEFFGEEQVSENLYVA-FARFEEKQKEFERVRVIYK 276
Query: 449 RALSSLPPEESIEVWKRFTQFEQMYGD 475
AL +P +++ E++K +T FE+ +GD
Sbjct: 277 YALDRIPKQQAQELFKNYTVFEKRFGD 303
>FB|FBgn0039600 [details] [associations]
symbol:CG1646 species:7227 "Drosophila melanogaster"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 InterPro:IPR001623 EMBL:AE014297 Gene3D:1.25.40.10
SMART:SM00271 GO:GO:0000398 GO:GO:0000381 eggNOG:COG5107
GO:GO:0005685 GeneTree:ENSGT00390000005033 KO:K13217 EMBL:AY051737
RefSeq:NP_001097957.1 RefSeq:NP_001097958.1 RefSeq:NP_651634.1
RefSeq:NP_733256.2 RefSeq:NP_788753.1 RefSeq:NP_788754.2
UniGene:Dm.31288 ProteinModelPortal:Q7KRW8 SMR:Q7KRW8 IntAct:Q7KRW8
MINT:MINT-820225 STRING:Q7KRW8 PaxDb:Q7KRW8 PRIDE:Q7KRW8
EnsemblMetazoa:FBtr0085322 GeneID:43399 KEGG:dme:Dmel_CG1646
UCSC:CG1646-RB FlyBase:FBgn0039600 InParanoid:Q7KRW8 OMA:IRWENES
OrthoDB:EOG4ZKH2F PhylomeDB:Q7KRW8 GenomeRNAi:43399 NextBio:833726
Bgee:Q7KRW8 Uniprot:Q7KRW8
Length = 1066
Score = 133 (51.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 61/270 (22%), Positives = 116/270 (42%)
Query: 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW----N 296
E Q WK L FE R +R++ +E+CL+ Y + W +
Sbjct: 701 ERAQLKNWKDYLDFEIEKGDR-------ERVLVLFERCLIACALYDEFWLKMLRYLESLE 753
Query: 297 AKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 355
+SG +D V++RA + PD L +A EE + A ++ + + N
Sbjct: 754 DQSGVVDLVRDVYRRACRIHHPDKPSLHLMWAAFEECQMNFDDAAEILQRIDQRCPNLLQ 813
Query: 356 LAHIQFIRFLRRTEGVEAAR---KYFLDARKSPNFTYHVYVAYA--LMAFCQDKDPKLAH 410
L++ + I RR ++ R K+++++ K+ + + YA L C D D LA
Sbjct: 814 LSYRR-INVERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYARFLNKICHDLDAGLA- 871
Query: 411 NVFEAGLKRFMHEPAYILEYADF-LSRLN-DDRNIRALFER--ALSSLPPEESIEVWKRF 466
+ L+R L+ D L R D++ + + ++ A + + P++ + +R
Sbjct: 872 -ALQQALERDPANTRVALQMIDLCLQRPKVDEQEVVEIMDKFMARADIEPDQKVLFAQRK 930
Query: 467 TQFEQMYGDLDSTLKVEQRR-KEALSRTGE 495
+F + +G L+ QR ++AL++ E
Sbjct: 931 VEFLEDFGSTARGLQDAQRALQQALTKAKE 960
Score = 83 (34.3 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 37/161 (22%), Positives = 68/161 (42%)
Query: 39 AQAA-PIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLW 96
A+AA Y+ LS +P + +W++Y + ++F R L I L V LW
Sbjct: 395 AEAAREAYDTFLSHYP----YCYGYWRKYADYEKRKGIKANCYKVFERGLEAIPLSVDLW 450
Query: 97 RCYIRFIRKVYEKKGTEGQEET--RKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNA 154
Y+ + K G +ET R ++ + G + S +W YI +
Sbjct: 451 IHYLMHV------KSNHGDDETFVRSQYERAVKACGLEFRSDKLWDAYIRW--------- 495
Query: 155 QEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSR 195
+ ES+R + + Y R + PT ++NF++ +++
Sbjct: 496 ENESKRYHRVVQIYDRLLAIPTQGYNG---HFDNFQDLINQ 533
Score = 47 (21.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 162 IAIRKAYQRAVVTPTHHVEQL-------WKDYENFE 190
+ R +++ + P HV+ L WKDY +FE
Sbjct: 680 VTARWSFEEGIKRPYFHVKPLERAQLKNWKDYLDFE 715
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 163 (62.4 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 53/208 (25%), Positives = 96/208 (46%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 253 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 312
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 393
+A A++++E + A H +I F R + V+ AR Y P+ ++
Sbjct: 313 NVAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYERFVLVHPDVKN--WI 368
Query: 394 AYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALF 447
YA ++K AH V+E ++ F M E Y+ +A F + +R ++
Sbjct: 369 KYARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIY 424
Query: 448 ERALSSLPPEESIEVWKRFTQFEQMYGD 475
+ AL + +++ E++K +T FE+ +GD
Sbjct: 425 KYALDRISKQDAQELFKNYTIFEKKFGD 452
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 163 (62.4 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 53/208 (25%), Positives = 96/208 (46%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 265 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 324
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 393
+A A++++E + A H +I F R + V+ AR Y P+ ++
Sbjct: 325 NVAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYERFVLVHPDVKN--WI 380
Query: 394 AYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALF 447
YA ++K AH V+E ++ F M E Y+ +A F + +R ++
Sbjct: 381 KYARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIY 436
Query: 448 ERALSSLPPEESIEVWKRFTQFEQMYGD 475
+ AL + +++ E++K +T FE+ +GD
Sbjct: 437 KYALDRISKQDAQELFKNYTIFEKKFGD 464
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 154 (59.3 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 56/221 (25%), Positives = 106/221 (47%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
+E+ L Y +W Y K+ +I+ A +F RA+ LP + L Y + +EE G
Sbjct: 93 FERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLG 152
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 393
I ++++E L + + +IR RR E AR Y P T ++
Sbjct: 153 NITGCRQVFERWLKWEPDENCW--MSYIRMERRYHENERARGIYERFVVVHPEVTN--WL 208
Query: 394 AYALMAFCQD-KDPKLAHNVFEAGL----KRFMHEPAYILEYADFLSRLNDDRNIRALFE 448
+A F ++ + V+ A + + F++E + + +A F R + R +F+
Sbjct: 209 RWA--RFEEECGNAANVRQVYLAAIDALGQEFLNE-RFFIAFAKFEIRQKEYERARTIFK 265
Query: 449 RALSSLPPEESIEVWKRFTQFEQMYGD---LDSTLKVEQRR 486
A+ +P +S+E++K +T FE+ +GD ++ST+ +++RR
Sbjct: 266 YAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTV-LDKRR 305
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 111/475 (23%), Positives = 187/475 (39%)
Query: 40 QAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVP-LWRC 98
+A I+E+ L V T+V W +Y+E+ M N + + L R + I +V LW
Sbjct: 90 RARSIFERALDVDSTSVPL----WIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYK 145
Query: 99 YIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEES 158
Y VY ++ TR+ F+ +S + G W YI K E
Sbjct: 146 Y------VYMEETLGNIPGTRQVFERWMSW---EPDEGA-WSAYIKLEKRY------NEF 189
Query: 159 QRMIAIRKAYQRAVVTPTHHVEQLWKDYENFE-----NSVSRQ---LAKGLLSE--YQSK 208
+R AI +QR + H + W + FE + + R+ LA L E K
Sbjct: 190 ERARAI---FQRFTIV--HPEPRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEK 244
Query: 209 YTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRIDTAS 266
A A + + K E + + K TFEK G+ + ++
Sbjct: 245 LFIAYARFETKLKEYERA--RAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVI 302
Query: 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY-- 324
KR + EQ L +Y D+W+D+A +SG + V++RA+ +P S+ R+
Sbjct: 303 LAKRRVQYEEQLKENLRNY-DVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWR 361
Query: 325 ------AFAELEESRGA--IAAAKKLYES---LLTDSVNTTALAHIQFIRFLRRTEGVEA 373
F L E A I A+++Y L+ T A + +F R ++A
Sbjct: 362 RYIYLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQA 421
Query: 374 ARKYFLDA-RKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 431
ARK A P + + Y+ F + ++E ++ ++YA
Sbjct: 422 ARKTLGQAIGMCPKDKLFRGYIDLERQLF----EFVRCRTLYEKQIEWNPSNSQSWIQYA 477
Query: 432 DFLSRLNDDRNIRALFERALSSLPPEESIE-VWKRFTQFEQMYGDLDSTLKVEQR 485
+ L+D RA++E + P + E VWK + FE G+ + ++ +R
Sbjct: 478 ELERGLDDTERARAIYELGIDQ-PTLDMPELVWKAYIDFEDDEGEYERERQLYER 531
Score = 52 (23.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 441 RNIRALFERALSSLPP----EESIEVWKRFTQFEQMYGDLDSTLKVEQR 485
R RA+FERA EE +E+ + FE +G + K+E++
Sbjct: 572 RRARAVFERAHRVFKEKELKEERVELLNAWRAFEHTHGSPEDIDKIEKQ 620
>DICTYBASE|DDB_G0283307 [details] [associations]
symbol:prpf39 "pre-mRNA processing factor 39"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
dictyBase:DDB_G0283307 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:AAFI02000052 KO:K13217
eggNOG:NOG298273 RefSeq:XP_639156.1 ProteinModelPortal:Q54R91
EnsemblProtists:DDB0233547 GeneID:8624026 KEGG:ddi:DDB_G0283307
InParanoid:Q54R91 OMA:ADHEYAH Uniprot:Q54R91
Length = 699
Score = 157 (60.3 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 85/376 (22%), Positives = 165/376 (43%)
Query: 44 IYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYI-R 101
+Y + L+ FP + F+ +WK++ + A NN + ++F + + I V +W Y
Sbjct: 60 VYSEFLNEFP--LCFL--YWKRFADHEYAHNNTTQSIEIFEKAVSSIPHSVDIWLNYCTH 115
Query: 102 FIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRM 161
I K Y +E R F ++ +G+D SG W +YI F +E+ +
Sbjct: 116 LIDKSYPV------DEIRSVFKRGINIIGTDYQSGKFWEKYIEF-------EMGQENNEL 162
Query: 162 IAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSK-YTSARA-----V 215
+I + + TP ++ Q++ E F++++ R +L+E + K YT A V
Sbjct: 163 ASI---FNSILKTPLENL-QIFN--EKFKDNIDRIKINDMLTEEERKEYTGYDAETKQMV 216
Query: 216 YRERKK-YCEEIDW-----NMLAVPPTGSYK-----EEQQWIAWKRLLTFEKGNPQRIDT 264
+ R+K Y E ++ N ++ + +E W+ + + +P
Sbjct: 217 LQNREKWYHETLEKISKRSNFESIVNKRFFFHIQPIDEMTLSVWRSYFNYMESDP----- 271
Query: 265 ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS--GSIDAAI--KVFQRALKALPDSE 320
+ + + +I +E+CL+ +Y + W Y + +S G + +F+RA K
Sbjct: 272 SVTQEEVIKLFERCLVPCCYYSEFWLKYIKFLQESYVGDNKNELIESIFERATKIFLKKR 331
Query: 321 M---LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI-QFIRFLRRTEGVEAARK 376
L Y+ +E + G I A + E++ S+ T L I + + F RR ++ A +
Sbjct: 332 ADIHLEYSLF-VESTLGNIEKAFSILENI--HSLLPTHLEVILRLVSFKRRNHSIQQANQ 388
Query: 377 YF---LDARKSPNFTY 389
+F L + +S + TY
Sbjct: 389 FFKKVLTSLQSDSKTY 404
Score = 41 (19.5 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 448 ERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTG--EEGASALED-S 504
E + L +E + +W + +F Y + K + + E+L G E +L D +
Sbjct: 548 EILVCKLNDDEKLNIWNDYLEFNLQYDNDIKGYKELKNKFESLYPDGKPESKKRSLTDMN 607
Query: 505 LQDVVSRYS 513
LQ S S
Sbjct: 608 LQSSSSSSS 616
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 143 (55.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 68/319 (21%), Positives = 133/319 (41%)
Query: 205 YQSKYTSARAVYRER--KKYCEEIDWNMLA-VPPTGSYKEEQQW----IAWKRLLTFEKG 257
Y + + R + E ++ E++ +A +PP ++E++ W W +E+
Sbjct: 336 YDAWFDYLRLLENEETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIYLWINYALYEEL 395
Query: 258 NPQRIDTASSNKRIIFTYEQCLMYLYH----YPDIWYDYATWNAKSGSIDAAIKVFQRAL 313
+ D A Y+ C+ + H + +W +A + + ++AA K+ A+
Sbjct: 396 VAKDFDRARQ------VYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAI 449
Query: 314 KALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEA 373
P ++ R A+ +LE +KLYE L S ++ I+F +
Sbjct: 450 GKCPKDKLFR-AYIDLELQLREFDRCRKLYEKFLESSPESSQ-TWIKFAELETLLGDTDR 507
Query: 374 ARKYFLDARKSP-----NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 428
+R F A + P + Y+ + + C++ + A +++E L+R H +I
Sbjct: 508 SRAVFTIAVQQPALDMPELLWKAYIDFEIA--CEEHEK--ARDLYETLLQRTNHIKVWI- 562
Query: 429 EYADFLSRLNDDRNIRALFERALSSLP---PEESIEVWKRFTQFEQMYGDLDSTLKVE-- 483
A+F + + R FERA SL EE + + + + + E GD ++ +VE
Sbjct: 563 SMAEFEQTIGNFEGARKAFERANQSLENAEKEERLMLLEAWKECETKSGDQEALKRVETM 622
Query: 484 --QRRKEALSRTGEEGASA 500
+R K+ E+G A
Sbjct: 623 MPRRVKKRRQIQTEDGVDA 641
Score = 133 (51.9 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 44/206 (21%), Positives = 89/206 (43%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
+E+ L + IW YA + I+ A VF RA+ +P + ++ +EE
Sbjct: 109 FERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKYSYMEEVIE 168
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394
I A++++E + A +I F R + ++ AR + ++
Sbjct: 169 NIPGARQIFERWI--EWEPPEQAWQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIK 226
Query: 395 YALMAFCQDKDPKL--AHNVFEAGLKRFMHEP---AYILEYADFLSRLNDDRNIRALFER 449
YA ++++ + A +E ++ F E ++ +A F R + R +F+
Sbjct: 227 YAKF---EERNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKY 283
Query: 450 ALSSLPPEESIEVWKRFTQFEQMYGD 475
L +LP + E++K +TQ E+ +G+
Sbjct: 284 GLDNLPSNRTEEIFKHYTQHEKKFGE 309
Score = 125 (49.1 bits), Expect = 0.00040, P = 0.00040
Identities = 99/488 (20%), Positives = 192/488 (39%)
Query: 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWR 97
+ A ++++ +++ P A+ F K+ Y+E + N +Q+F R + W+
Sbjct: 136 INHARNVFDRAITIMPRAMQFWLKY--SYMEE--VIENIPGARQIFERWIEWEPPEQAWQ 191
Query: 98 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHV-GSDISSGPIWLEYITFLKSLPAL-NAQ 155
YI F + E + R + L HV G ++ + W++Y F + + NA+
Sbjct: 192 TYINFELRYKEI------DRARSVYQRFL-HVHGINVQN---WIKYAKFEERNGYIGNAR 241
Query: 156 EESQRMIAI--RKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSA- 212
++ + + V+ E+ K++E +R + K L S T
Sbjct: 242 AAYEKAMEYFGEEDINETVLVAFALFEERQKEHER-----ARGIFKYGLDNLPSNRTEEI 296
Query: 213 -RAVYRERKKYCEEIDWNMLAVPPTGS-YK---EEQ-----QWIAWKRLLTFEKGNPQRI 262
+ + KK+ E + + + + Y+ EE W + RLL E+ + + +
Sbjct: 297 FKHYTQHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEV 356
Query: 263 DTASSNKRII-----FTYEQCLMYLYHYPDIWYDYATWNAK-SGSIDAAIKVFQRALKAL 316
+ +R I +Y Q Y Y +W +YA + + D A +V++ + +
Sbjct: 357 EDVY--ERAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQVYKACIDII 414
Query: 317 PDSEM----LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTAL-AHIQFIRFLRRTEGV 371
P + FA E + + AA+K+ + A+I LR +
Sbjct: 415 PHKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKDKLFRAYIDLELQLREFDRC 474
Query: 372 EAARKYFLDARKSPNFTYHVYVAYA-LMAFCQDKDPKLAHNVFEAGLKR-FMHEPAYILE 429
+ FL++ SP + ++ +A L D D A VF +++ + P + +
Sbjct: 475 RKLYEKFLES--SPESS-QTWIKFAELETLLGDTDRSRA--VFTIAVQQPALDMPELLWK 529
Query: 430 -YADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 488
Y DF + R L+E L I+VW +FEQ G+ + K +R +
Sbjct: 530 AYIDFEIACEEHEKARDLYETLLQRT---NHIKVWISMAEFEQTIGNFEGARKAFERANQ 586
Query: 489 ALSRTGEE 496
+L +E
Sbjct: 587 SLENAEKE 594
Score = 56 (24.8 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLW 96
+ +A ++E+ L V ++S W QY E M + + +F R + I + + W
Sbjct: 102 IQRARSVFERALDVDHRSISI----WLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFW 157
Query: 97 RCYIRFIRKVYE 108
Y ++ +V E
Sbjct: 158 LKY-SYMEEVIE 168
>WB|WBGene00016837 [details] [associations]
symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 142 (55.0 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 69/283 (24%), Positives = 116/283 (40%)
Query: 242 EQQWIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ + W L + + + T +S + + TYE+CLM L+ P IW Y K G
Sbjct: 72 ERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRG 131
Query: 301 SIDAAIKVFQRALKALPDSEMLRY--AFAELEESRGAIAAAKKLYESLLTDSVNTTALA- 357
I +VF RAL++LP ++ +R + S ++Y L +N A
Sbjct: 132 LITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYL--KMNPKARED 189
Query: 358 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 417
+++++ + R + EAA++ + N + A+ L D K +F +
Sbjct: 190 YVEYL--IERDQIDEAAKELTTLVNQDQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNV 247
Query: 418 KRFMHEPAYILEYAD---FLSRLNDDRNIR-ALFERALSSLPPEESIEVWKRFTQFEQMY 473
+ + Y Y D FL D IR A FERA EE+I F Q+Y
Sbjct: 248 DAIIRQGIY--RYTDQVGFLWCSLADYYIRSAEFERARDVY--EEAIAKVSTVRDFAQVY 303
Query: 474 GDLDSTLKVEQRRKEALSRTGEEGASALED-SLQDVVSRYSFM 515
D+ E+R + + E+ E+ L+ + RY +
Sbjct: 304 ---DAYAAFEEREVSIMMQEVEQSGDPEEEVDLEWMFQRYQHL 343
Score = 115 (45.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 46/206 (22%), Positives = 91/206 (44%)
Query: 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKK 341
++ P +W YA + G++++ KV+ + ++ S + +A E A +
Sbjct: 484 VHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQ 543
Query: 342 LYES--LLTDSVNTTALAHIQFIRFLRRTEG--VEAARKYFLDARKSPNFTYHVYVAYAL 397
YE L + + ++F++R G +E AR F ++ T+ Y+ + L
Sbjct: 544 AYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYI-FLL 602
Query: 398 MAFCQDKDPKLAH--NVFE---AGLKRF-MHEPAYILEYADFLSRLNDDRNIRALFERAL 451
A +++ H +++ +G+ R MH I Y + + R +FERA+
Sbjct: 603 YAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNI--YIKKVQEMYGIAQCRPIFERAI 660
Query: 452 SSLPPEESIEVWKRFTQFEQMYGDLD 477
S LP ++S + R+ Q E G++D
Sbjct: 661 SELPEDKSRAMSLRYAQLETTVGEID 686
Score = 86 (35.3 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 38/121 (31%), Positives = 56/121 (46%)
Query: 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMA--VNN---DDATKQL---FSRCLL 88
P Q IYE+ L+VF + K W Y++ + VN D++ + L + RCL+
Sbjct: 56 PAKQMFLIYERALAVFERSY----KLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLM 111
Query: 89 ICLQVP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLK 147
++P +W CY +V K+G ETR+ FD L + IW YI FL
Sbjct: 112 RLHKMPRIWICYC----EVMIKRGLI--TETRRVFDRALRSLPVT-QHMRIWTLYIGFLT 164
Query: 148 S 148
S
Sbjct: 165 S 165
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 156 EESQRMIAIRKAYQRAVVTPTHHVEQL---WKDYENFENSVSRQLAKGLLSEYQ 206
E++ + A RK ++ AV++ V +L W Y E R AK L+ Q
Sbjct: 412 EDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKR--AKAALTVMQ 463
>UNIPROTKB|P91175 [details] [associations]
symbol:C50F2.3 "Protein C50F2.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 142 (55.0 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 69/283 (24%), Positives = 116/283 (40%)
Query: 242 EQQWIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 300
E+ + W L + + + T +S + + TYE+CLM L+ P IW Y K G
Sbjct: 72 ERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRG 131
Query: 301 SIDAAIKVFQRALKALPDSEMLRY--AFAELEESRGAIAAAKKLYESLLTDSVNTTALA- 357
I +VF RAL++LP ++ +R + S ++Y L +N A
Sbjct: 132 LITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYL--KMNPKARED 189
Query: 358 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 417
+++++ + R + EAA++ + N + A+ L D K +F +
Sbjct: 190 YVEYL--IERDQIDEAAKELTTLVNQDQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNV 247
Query: 418 KRFMHEPAYILEYAD---FLSRLNDDRNIR-ALFERALSSLPPEESIEVWKRFTQFEQMY 473
+ + Y Y D FL D IR A FERA EE+I F Q+Y
Sbjct: 248 DAIIRQGIY--RYTDQVGFLWCSLADYYIRSAEFERARDVY--EEAIAKVSTVRDFAQVY 303
Query: 474 GDLDSTLKVEQRRKEALSRTGEEGASALED-SLQDVVSRYSFM 515
D+ E+R + + E+ E+ L+ + RY +
Sbjct: 304 ---DAYAAFEEREVSIMMQEVEQSGDPEEEVDLEWMFQRYQHL 343
Score = 115 (45.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 46/206 (22%), Positives = 91/206 (44%)
Query: 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKK 341
++ P +W YA + G++++ KV+ + ++ S + +A E A +
Sbjct: 484 VHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQ 543
Query: 342 LYES--LLTDSVNTTALAHIQFIRFLRRTEG--VEAARKYFLDARKSPNFTYHVYVAYAL 397
YE L + + ++F++R G +E AR F ++ T+ Y+ + L
Sbjct: 544 AYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYI-FLL 602
Query: 398 MAFCQDKDPKLAH--NVFE---AGLKRF-MHEPAYILEYADFLSRLNDDRNIRALFERAL 451
A +++ H +++ +G+ R MH I Y + + R +FERA+
Sbjct: 603 YAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNI--YIKKVQEMYGIAQCRPIFERAI 660
Query: 452 SSLPPEESIEVWKRFTQFEQMYGDLD 477
S LP ++S + R+ Q E G++D
Sbjct: 661 SELPEDKSRAMSLRYAQLETTVGEID 686
Score = 86 (35.3 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 38/121 (31%), Positives = 56/121 (46%)
Query: 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMA--VNN---DDATKQL---FSRCLL 88
P Q IYE+ L+VF + K W Y++ + VN D++ + L + RCL+
Sbjct: 56 PAKQMFLIYERALAVFERSY----KLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLM 111
Query: 89 ICLQVP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLK 147
++P +W CY +V K+G ETR+ FD L + IW YI FL
Sbjct: 112 RLHKMPRIWICYC----EVMIKRGLI--TETRRVFDRALRSLPVT-QHMRIWTLYIGFLT 164
Query: 148 S 148
S
Sbjct: 165 S 165
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 156 EESQRMIAIRKAYQRAVVTPTHHVEQL---WKDYENFENSVSRQLAKGLLSEYQ 206
E++ + A RK ++ AV++ V +L W Y E R AK L+ Q
Sbjct: 412 EDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKR--AKAALTVMQ 463
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 149 (57.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 93/408 (22%), Positives = 174/408 (42%)
Query: 2 ASSSVEPESEENITGV-----ADKYN----VETAEILANSALHLPVAQAAPIYEQLLSVF 52
+ S E ES + I + A+ YN V+ ++L +A + QA E + ++F
Sbjct: 40 SDSEDEAESNQQIVTLESELSANPYNYDAYVQYIKLLRKTANLEKLRQAR---EAMSAIF 96
Query: 53 PTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEK-KG 111
P + S + W + + A N L+ R L V LW Y+ F+ + +G
Sbjct: 97 PLSPSLWLE-WARDEASLAASENVPEIVMLYERGLSDYQSVSLWCDYLSFMLEFDPSVRG 155
Query: 112 --TEGQEETRKAFDFMLSHVGSDISSGP-IWLEYITF----LKSLPALNAQEESQRMIAI 164
+EG + R F+ + G ++ G IW Y F L ++ + +E ++++ I
Sbjct: 156 YPSEGISKMRSLFERAIPAAGFHVTEGNRIWEGYREFEQGVLATIDEADIEERNKQIQRI 215
Query: 165 RKAYQRAVVTPTHHVEQLWKDYENFE--NSVSRQLAKGLLSEYQSKYT----SARAVYRE 218
R + R + P ++ Y+ +E + + LS+ + A+ +Y E
Sbjct: 216 RSIFHRHLSVPLENLSSTLIAYKTWELEQGIDLDIGSDDLSKVSHQVAVANKKAQQMYSE 275
Query: 219 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQC 278
R E I L+ T ++E +I +++ G+P R+ YE+
Sbjct: 276 RAHLEENISKQDLS--DTEKFQEFMNYIKFEKT----SGDPTRVQAI---------YERA 320
Query: 279 LMYLYHYPDIWYDYATWNAKSGSIDAAIK-VFQRALKALPDSEML--RYAFAELEESRGA 335
+ D+W DY + K+ + AI + RA ++ P + L RY A LE RG+
Sbjct: 321 VAEYPVSSDLWIDYTVYLDKTLKVGKAITHAYSRATRSCPWTGDLWARYLLA-LE--RGS 377
Query: 336 IAAAKKLYESLLTDSVNTTALAHIQFIR-FLRRTEGVEAARKYFLDAR 382
A+ K++Y+ + S+ T + +++ +L R +G+ R+ L R
Sbjct: 378 -ASEKEIYD-VFEKSLQCTFSSFEEYLDLYLTRVDGL---RRRMLSTR 420
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 147 (56.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 54/192 (28%), Positives = 87/192 (45%)
Query: 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347
+W YA + K+ S++ A V+ RA+ LP + L Y F +EE G IA A+++ E +
Sbjct: 93 VWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWI 152
Query: 348 TDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYVAYALMAFCQDKDP 406
S + A + FI+F + +E AR Y P + Y+ YA +
Sbjct: 153 HCSPDQQAW--LCFIKFELKYNEIECARSIYERFVLCHPKVS--AYIRYAKFEM-KHGQV 207
Query: 407 KLAHNVFEAGLKRFMH-EPAYIL--EYADFLSRLNDDRNIRALFERALSSLPPEESIEVW 463
+LA VFE K E A IL +A+F + ++ AL +P + ++
Sbjct: 208 ELAMKVFERAKKELADDEEAEILFVAFAEFEEQ----------YKFALDQIPKGRAENLY 257
Query: 464 KRFTQFEQMYGD 475
+F FE+ GD
Sbjct: 258 SKFVAFEKQNGD 269
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 121 (47.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 68/291 (23%), Positives = 120/291 (41%)
Query: 233 VPPTGSYKEEQQWI-AWKRLLTFEKGNPQRIDTASS--NK--RIIFTYEQCLMYLYHYPD 287
+P S K +++I W FE+ Q I A N +I+ +YE + +
Sbjct: 357 IPIISSKKFWKRYIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYE------FTFKK 410
Query: 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347
I+ YAT+ + +++ A +F AL+ +P+ ++ F E E G I + +Y +
Sbjct: 411 IFILYATFELRQLNVNKARSIFNNALQTIPNEKIFE-KFCEFELKLGNIRECRNVYAKYV 469
Query: 348 TDSVNTTALAHIQFIRFLRRTEGVEAARKYF-----LDARKSPNFTYHVYVAYALMAFCQ 402
++ + A I I F + VE AR+ LD K P + Y+ + Q
Sbjct: 470 -EAFPFNSKAWISMINFELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINL--Q 526
Query: 403 DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI-RALFERALSSLPPEESIE 461
+ D A +++ L H Y YA+F DD + R + E + E I
Sbjct: 527 EYDN--ARKLYDRLLNITQHYKVY-KSYAEFTYIYLDDIEMCRKILEEGIEFCKKNELIN 583
Query: 462 ---VWKRFT-QFEQMYGD---LDSTLK--VEQRRKEALSRTGEEGASALED 503
+ F E+ YGD +D TLK ++ +K + + + +E+
Sbjct: 584 ERCILLNFLCDIEKDYGDKEIIDKTLKRLPKKVKKRKIIKNNDNDDEIIEE 634
Score = 60 (26.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 44 IYEQLLSVFPTAVSFIAKFWKQYVEAYMAVN 74
+YE+ +S+ P S KFWK+Y+ Y+ +N
Sbjct: 349 LYERAISIIPIISS--KKFWKRYI--YLWIN 375
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 121 (47.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 68/291 (23%), Positives = 120/291 (41%)
Query: 233 VPPTGSYKEEQQWI-AWKRLLTFEKGNPQRIDTASS--NK--RIIFTYEQCLMYLYHYPD 287
+P S K +++I W FE+ Q I A N +I+ +YE + +
Sbjct: 357 IPIISSKKFWKRYIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYE------FTFKK 410
Query: 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347
I+ YAT+ + +++ A +F AL+ +P+ ++ F E E G I + +Y +
Sbjct: 411 IFILYATFELRQLNVNKARSIFNNALQTIPNEKIFE-KFCEFELKLGNIRECRNVYAKYV 469
Query: 348 TDSVNTTALAHIQFIRFLRRTEGVEAARKYF-----LDARKSPNFTYHVYVAYALMAFCQ 402
++ + A I I F + VE AR+ LD K P + Y+ + Q
Sbjct: 470 -EAFPFNSKAWISMINFELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINL--Q 526
Query: 403 DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI-RALFERALSSLPPEESIE 461
+ D A +++ L H Y YA+F DD + R + E + E I
Sbjct: 527 EYDN--ARKLYDRLLNITQHYKVY-KSYAEFTYIYLDDIEMCRKILEEGIEFCKKNELIN 583
Query: 462 ---VWKRFT-QFEQMYGD---LDSTLK--VEQRRKEALSRTGEEGASALED 503
+ F E+ YGD +D TLK ++ +K + + + +E+
Sbjct: 584 ERCILLNFLCDIEKDYGDKEIIDKTLKRLPKKVKKRKIIKNNDNDDEIIEE 634
Score = 60 (26.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 44 IYEQLLSVFPTAVSFIAKFWKQYVEAYMAVN 74
+YE+ +S+ P S KFWK+Y+ Y+ +N
Sbjct: 349 LYERAISIIPIISS--KKFWKRYI--YLWIN 375
>ZFIN|ZDB-GENE-030616-420 [details] [associations]
symbol:prpf39 "PRP39 pre-mRNA processing factor 39
homolog (yeast)" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-030616-420 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
Gene3D:1.25.40.10 eggNOG:COG5107 EMBL:AL591492 EMBL:BC116540
IPI:IPI00481955 RefSeq:NP_001004520.1 UniGene:Dr.340
ProteinModelPortal:Q1JPZ7 STRING:Q1JPZ7 PRIDE:Q1JPZ7
Ensembl:ENSDART00000061672 GeneID:368864 KEGG:dre:368864 CTD:55015
GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 InParanoid:Q1JPZ7 KO:K13217 OMA:GWVYLLQ
OrthoDB:EOG49GKG9 NextBio:20813235 ArrayExpress:Q1JPZ7 Bgee:Q1JPZ7
Uniprot:Q1JPZ7
Length = 752
Score = 132 (51.5 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 71/334 (21%), Positives = 133/334 (39%)
Query: 62 FWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWRCYIRFIRKVYEKKGTEGQEETRK 120
+WK+Y + +++ R L I L V LW YI F+R+ + E + R
Sbjct: 202 YWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRA 261
Query: 121 AFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVE 180
+++ + G+D S +W YI + + E ++ + Y R + PT
Sbjct: 262 SYEHAVLACGTDFRSDRLWEAYIAW---------ETEQGKLANVTAIYDRLLCIPTQLYS 312
Query: 181 QLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLA----VPPT 236
Q ++ F++ V K LSE ++ S R K + D A +PP
Sbjct: 313 Q---HFQKFKDHVQSNNPKHFLSE--EEFVSLRVELANANKPSGDEDAETEAPGEELPP- 366
Query: 237 GSYKEEQQWIAWKRLLTFEKGNPQRIDTASS----NKRII---FTYEQCLMYLY-HYPDI 288
G+ E+ A KR+ E + I+T N+ + + +E+ + Y H +
Sbjct: 367 GT--EDLPDPA-KRVTEIENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRPYFHVKAL 423
Query: 289 -------WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKK 341
W +Y + ++G+ + + +F+R L A E +A+ ES A +
Sbjct: 424 EKTQLNNWREYLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESYST-EAVRH 482
Query: 342 LYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR 375
+Y+ T + H+ + F + ++ AR
Sbjct: 483 IYKKACTVHLPKKPNVHLLWAAFEEQQGSIDEAR 516
>ASPGD|ASPL0000052140 [details] [associations]
symbol:AN0111 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0008380 EMBL:BN001308
GO:GO:0006397 GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10
EMBL:AACD01000004 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
RefSeq:XP_657715.1 ProteinModelPortal:Q5BH69 STRING:Q5BH69
EnsemblFungi:CADANIAT00002638 GeneID:2875887 KEGG:ani:AN0111.2
HOGENOM:HOG000176133 OrthoDB:EOG4DBXP7 Uniprot:Q5BH69
Length = 851
Score = 108 (43.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 45/198 (22%), Positives = 85/198 (42%)
Query: 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE--- 344
+W Y SI+ KV++R + + +A L E + K+YE
Sbjct: 512 LWSFYVDLVESVSSIEETKKVYERIFELRIATPQTVVNYANLLEEHKYFEESFKVYERGL 571
Query: 345 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS--PNFTYHVYVAYALMAFCQ 402
L T V L ++ + + R G+E R F A P F +Y+ Y + +
Sbjct: 572 DLFTYPV-AFELWNLYLTKAVDRKIGIERLRDLFEQALDGCPPKFARPLYLMYGNLE--E 628
Query: 403 DKD-PKLAHNVFEAGLKRFMHEPAY-ILEYADFLSRLNDDR-NIRALFERALSSLPPEES 459
++ + A ++E + E + + E+ S N + R ++ERA+++LP E+
Sbjct: 629 ERGLARHAMRIYERATRAVSDEDRFEMFEFYITKSASNFGLPSTRPIYERAIAALPDHEA 688
Query: 460 IEVWKRFTQFEQMYGDLD 477
E+ +F + E+ G++D
Sbjct: 689 KEMCLKFAEMERRLGEID 706
Score = 71 (30.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 36/146 (24%), Positives = 61/146 (41%)
Query: 61 KFWKQYVEAYMA-VNNDDATKQ---------LFSRCLLICLQVP-LWRCYIRFIRKVYEK 109
K WK Y+E + N +A K LF R L++ ++P +W Y+ F+ + +
Sbjct: 84 KLWKMYLEFRTKHLKNRNAIKYRAEFQKVNTLFERALILLNKMPRIWEMYLTFM--LQQP 141
Query: 110 KGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIR---- 165
T+ TR+ FD L + IW Y TF +S A + R + I
Sbjct: 142 LVTQ----TRRTFDRALRALPVT-QHNRIWKLYKTFARSASGQTAVKIWARYMQIHPENA 196
Query: 166 KAYQRAVVTPTHHVEQLWKDYENFEN 191
+ Y +V H+ + + + E +N
Sbjct: 197 EEYINLLVEMGHYTDAIKRYMEILDN 222
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 131 (51.2 bits), Expect = 0.00026, P = 0.00026
Identities = 49/221 (22%), Positives = 101/221 (45%)
Query: 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346
++W G+ + +KVF+RA++ ++ ++ ++ S A++LY ++
Sbjct: 1629 NVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQH-LCDIYASSEKYKQAEELYHTM 1687
Query: 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA--YALMAFCQDK 404
L ++ +++ FL + EA + A K+ HV V +A + F +
Sbjct: 1688 LRRFRQEKSV-WLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEF-RFG 1745
Query: 405 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVW 463
DP+ A +FE+ L + Y D + + + IR +FER + +L P++ +
Sbjct: 1746 DPEHAKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFF 1805
Query: 464 KRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDS 504
KR+ +E+ YG ++ + V+ E + E S+L D+
Sbjct: 1806 KRYLDYEKKYGTTETVMAVKTAALEYV-----EAKSSLADT 1841
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 126 (49.4 bits), Expect = 0.00029, P = 0.00029
Identities = 42/208 (20%), Positives = 91/208 (43%)
Query: 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334
+E+ L + P +W YA K+ +I+ A ++ RA+ LP L + + +E+ G
Sbjct: 98 FERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLG 157
Query: 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV- 393
AA+ ++E + A +++F +R + E R F H Y+
Sbjct: 158 NYPAARAIFERWMQWKPEPQAWN--SYLKFEQRLKLFENTRLIF-----EKYILVHPYIK 210
Query: 394 AYALMAFCQDKDPKL--AHNVFEAGLKRFMHEPA----YILEYADFLSRLNDDRNIRALF 447
+ +++ + A +F+ ++ F+ E + +A F + + R ++
Sbjct: 211 TWIKYTKFEERLGNIENARTIFQRAIE-FLGEDGNDEQLFIAFAKFEEKYKEIERARVIY 269
Query: 448 ERALSSLPPEESIEVWKRFTQFEQMYGD 475
+ A+ +P + +++ FT FE+ +GD
Sbjct: 270 KYAIDHVPKSRAKDLFDTFTNFEKQHGD 297
>POMBASE|SPBC211.02c [details] [associations]
symbol:cwf3 "complexed with Cdc5 protein Cwf3"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0044732 "mitotic spindle
pole body" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPBC211.02c
GO:GO:0005829 GO:GO:0044732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0045292
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
OrthoDB:EOG4DBXP7 EMBL:AF251149 PIR:T50337 RefSeq:NP_596612.1
ProteinModelPortal:Q9P7R9 IntAct:Q9P7R9 STRING:Q9P7R9
EnsemblFungi:SPBC211.02c.1 GeneID:2540753 KEGG:spo:SPBC211.02c
NextBio:20801873 Uniprot:Q9P7R9
Length = 790
Score = 124 (48.7 bits), Expect = 0.00055, P = 0.00055
Identities = 61/253 (24%), Positives = 112/253 (44%)
Query: 237 GSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWN 296
GSYK + ++ R+ E NP A ++ F E+ L+ L+ P IW Y +
Sbjct: 63 GSYKIWKSYLEL-RVAHVEHLNPYFHAEAFASVNDCF--ERSLILLHKMPVIWKLYLQFL 119
Query: 297 AKSGSIDAAIKVFQRALKALPDSEM--LRYAFAELEESRGAIAAAKKLYESLLTDSVNTT 354
K ++ F AL+ALP ++ + F + E G + +Y + V
Sbjct: 120 MKQPNVTKIRCTFNSALRALPVTQHDDIWDMFTKYAEDIGGLFCIH-VYRRYI--QVEPR 176
Query: 355 ALAHIQFIRFLRRTEGV--EAARKY--------FLDARKSPNFTYHVYVAYA-LMAFCQD 403
A+ + +I L + G+ EAAR+Y FL A++ N Y +++ ++ L+ D
Sbjct: 177 AIEN--YIEILCKL-GLWNEAARQYEDILNRPVFLSAKRKSN--YQIWLEFSELVVQHPD 231
Query: 404 KDPKL-AHNVFEAGLKRFMHEPAYILEY-ADFLSRLNDDRNIRALFERALSSLPPEESIE 461
+ VF AG+KRF + + Y A + R+ D R+ F ++++ +
Sbjct: 232 HTQNIDVEKVFRAGIKRFSDQAGKLWTYLAQYYIRIGDYEKARSTFYEGMNNIMTVRNFT 291
Query: 462 V-WKRFTQFEQMY 473
+ + F +FE+ +
Sbjct: 292 IIFDAFVEFEEQW 304
>ZFIN|ZDB-GENE-030131-2575 [details] [associations]
symbol:prpf6 "PRP6 pre-mRNA processing factor 6
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-030131-2575 GO:GO:0005634 Gene3D:1.25.40.10
GO:GO:0000398 KO:K12855 InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 HOVERGEN:HBG023330 EMBL:BC056710 IPI:IPI00484708
RefSeq:NP_997820.1 UniGene:Dr.150395 ProteinModelPortal:Q6PH55
STRING:Q6PH55 GeneID:323855 KEGG:dre:323855 InParanoid:Q6PH55
NextBio:20808461 ArrayExpress:Q6PH55 Bgee:Q6PH55 Uniprot:Q6PH55
Length = 944
Score = 123 (48.4 bits), Expect = 0.00089, P = 0.00089
Identities = 54/225 (24%), Positives = 93/225 (41%)
Query: 275 YEQCLMYLYHY---PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE 331
+E C L HY P +W +S SID A + + + LK P S L + LEE
Sbjct: 698 HELCTEALKHYEDFPKLWMMRGQIEEQSESIDRAREAYNQGLKKCPHSMSLWLLLSRLEE 757
Query: 332 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA-RKSPNFTYH 390
G + A+ + E + + L ++ +R R A A ++ PN
Sbjct: 758 KVGQLTRARAILEKARLKNPQSPEL-WLESVRLEYRAGLKNIANTLMAKALQECPNSG-- 814
Query: 391 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERA 450
+ ++ F + + + +V +A LK+ H+P +L A R F R
Sbjct: 815 --ILWSEAVFLEARPQRKTKSV-DA-LKKCEHDPHVLLAVAKLFWSERKITKAREWFLRT 870
Query: 451 LSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGE 495
+ + P+ + W F +FE +G + +V++R + A R GE
Sbjct: 871 VK-IEPDLG-DAWGFFYKFELQHGTEEQQHEVKKRCENAEPRHGE 913
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 774 725 0.00086 121 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 60
No. of states in DFA: 630 (67 KB)
Total size of DFA: 386 KB (2188 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 62.56u 0.12s 62.68t Elapsed: 00:00:02
Total cpu time: 62.58u 0.12s 62.70t Elapsed: 00:00:02
Start: Sat May 11 00:45:58 2013 End: Sat May 11 00:46:00 2013