BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004093
(774 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/528 (39%), Positives = 304/528 (57%), Gaps = 33/528 (6%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D +
Sbjct: 11 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 66
Query: 81 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPI 138
+LF RCL+ L + LW+CY+ ++R E KG +E+ +A+DF L +G +I S I
Sbjct: 67 KLFQRCLMKVLHIDLWKCYLSYVR---ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI 123
Query: 139 WLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLA 198
W++YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LA
Sbjct: 124 WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183
Query: 199 KGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN 258
K ++ + Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK N
Sbjct: 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243
Query: 259 PQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------D 303
P R D KR++F YEQCL+ L H+PDIWY+ A + +S + D
Sbjct: 244 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303
Query: 304 AAIKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362
A +++RA+ L ML Y A+A+ EESR +Y LL L +IQ++
Sbjct: 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 363
Query: 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422
+F RR EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++
Sbjct: 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 423
Query: 423 EPAYILEYADFLSRLNDDRNIRALFERALS--SLPPEESIEVWKRFTQFEQMYGDLDSTL 480
P Y+L Y D+LS LN+D N R LFER L+ SLPPE+S E+W RF FE GDL S L
Sbjct: 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483
Query: 481 KVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHL 528
KVE+RR A E +AL +V RY FMDL+PCS+ +L L
Sbjct: 484 KVEKRRFTAFREEYEGKETAL------LVDRYKFMDLYPCSASELKAL 525
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
Length = 308
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 169/307 (55%), Gaps = 24/307 (7%)
Query: 240 KEEQQWIAWKRLLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK 298
+E QQ WK+ + +EK NP R D KR+ F YEQCL+ L H+PDIWY+ A + +
Sbjct: 3 QEAQQVDXWKKYIQWEKSNPLRTEDQTLITKRVXFAYEQCLLVLGHHPDIWYEAAQYLEQ 62
Query: 299 SGSI--------------DAAIKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLY 343
S + D A +++RA+ L + +L +A+A+ EESR +Y
Sbjct: 63 SSKLLAEKGDXNNAKLFSDEAANIYERAISTLLKKNXLLYFAYADYEESRXKYEKVHSIY 122
Query: 344 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD 403
LL L +IQ+ +F RR EG+++ R F AR+ +HVYV AL +
Sbjct: 123 NRLLAIEDIDPTLVYIQYXKFARRAEGIKSGRXIFKKAREDARTRHHVYVTAALXEYYCS 182
Query: 404 KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS--SLPPEESIE 461
KD +A +FE GLK++ P Y+L Y D+LS LN+D N R LFER L+ SLPPE+S E
Sbjct: 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242
Query: 462 VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCS 521
+W RF FE GDL S LKVE+RR A E +AL +V RY F DL+PCS
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETAL------LVDRYKFXDLYPCS 296
Query: 522 SKDLDHL 528
+ +L L
Sbjct: 297 ASELKAL 303
>pdb|4E6H|A Chain A, Crystal Structure Of The Hat Domain Of K. Lactis Rna14
Length = 679
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 221/490 (45%), Gaps = 53/490 (10%)
Query: 82 LFSRCLLICL---QVPLWRCYIRFIRKVYEKKGTEGQEETR----KAFDFMLSHVGS-DI 133
+ +RCL L + LW YI ++RK + G EE R +AF ++ +
Sbjct: 125 VLARCLSKELGNNDLSLWLSYITYVRK--KNDIITGGEEARNIVIQAFQVVVDKCAIFEP 182
Query: 134 SSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSV 193
S W EY+ FL+ +N EE QR+ IRK Y+ + P +E +W+ Y +E V
Sbjct: 183 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV 242
Query: 194 SRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNM---------LAVPPTGSYKEEQQ 244
++ A+ + E ++Y +AR++Y++ + + N+ +P Y + QQ
Sbjct: 243 NQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY-DVQQ 301
Query: 245 WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA 304
+ W + +E N + R+ + Y Q ++ P+IW++ A + + +
Sbjct: 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST 361
Query: 305 AI-KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL------------TDSV 351
I K + + +P+S +L ++ +E E I + S + D
Sbjct: 362 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421
Query: 352 NTTALAHIQ---------FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFC 401
N +A+ ++ ++ ++R +G+ A+RK F R+ T +Y+ A + +
Sbjct: 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481
Query: 402 QDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE 461
KD K A V E GLK F + YI +Y DFL +N++ +++LFE ++ + ++
Sbjct: 482 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541
Query: 462 -VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPC 520
++++ FE G L+S +E+R E + L++ ++Y +D+
Sbjct: 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV---------NKLEEFTNKYKVLDVNYL 592
Query: 521 SSKDLDHLVR 530
+LD++VR
Sbjct: 593 QRLELDYMVR 602
>pdb|4E85|A Chain A, Crystal Structure Of Hat Domain Of Rna14
pdb|4E85|B Chain B, Crystal Structure Of Hat Domain Of Rna14
Length = 678
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 221/490 (45%), Gaps = 53/490 (10%)
Query: 82 LFSRCLLICL---QVPLWRCYIRFIRKVYEKKGTEGQEETR----KAFDFMLSHVGS-DI 133
+ +RCL L + LW YI ++RK + G EE R +AF ++ +
Sbjct: 124 VLARCLSKELGNNDLSLWLSYITYVRK--KNDIITGGEEARNIVIQAFQVVVDKCAIFEP 181
Query: 134 SSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSV 193
S W EY+ FL+ +N EE QR+ IRK Y+ + P +E +W+ Y +E V
Sbjct: 182 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV 241
Query: 194 SRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNM---------LAVPPTGSYKEEQQ 244
++ A+ + E ++Y +AR++Y++ + + N+ +P Y + QQ
Sbjct: 242 NQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY-DVQQ 300
Query: 245 WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA 304
+ W + +E N + R+ + Y Q ++ P+IW++ A + + +
Sbjct: 301 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST 360
Query: 305 AI-KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL------------TDSV 351
I K + + +P+S +L ++ +E E I + S + D
Sbjct: 361 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 420
Query: 352 NTTALAHIQ---------FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFC 401
N +A+ ++ ++ ++R +G+ A+RK F R+ T +Y+ A + +
Sbjct: 421 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 480
Query: 402 QDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE 461
KD K A V E GLK F + YI +Y DFL +N++ +++LFE ++ + ++
Sbjct: 481 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 540
Query: 462 -VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPC 520
++++ FE G L+S +E+R E + L++ ++Y +D+
Sbjct: 541 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV---------NKLEEFTNKYKVLDVNYL 591
Query: 521 SSKDLDHLVR 530
+LD++VR
Sbjct: 592 QRLELDYMVR 601
>pdb|4EBA|A Chain A, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|B Chain B, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|C Chain C, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|D Chain D, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|E Chain E, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|F Chain F, Crystal Structure Of The Rna14-Rna15 Complex
Length = 645
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 221/490 (45%), Gaps = 53/490 (10%)
Query: 82 LFSRCLLICL---QVPLWRCYIRFIRKVYEKKGTEGQEETR----KAFDFMLSHVGS-DI 133
+ +RCL L + LW YI ++RK + G EE R +AF ++ +
Sbjct: 91 VLARCLSKELGNNDLSLWLSYITYVRK--KNDIITGGEEARNIVIQAFQVVVDKCAIFEP 148
Query: 134 SSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSV 193
S W EY+ FL+ +N EE QR+ IRK Y+ + P +E +W+ Y +E V
Sbjct: 149 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV 208
Query: 194 SRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNM---------LAVPPTGSYKEEQQ 244
++ A+ + E ++Y +AR++Y++ + + N+ +P Y + QQ
Sbjct: 209 NQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY-DVQQ 267
Query: 245 WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA 304
+ W + +E N + R+ + Y Q ++ P+IW++ A + + +
Sbjct: 268 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST 327
Query: 305 AI-KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL------------TDSV 351
I K + + +P+S +L ++ +E E I + S + D
Sbjct: 328 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 387
Query: 352 NTTALAHIQ---------FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFC 401
N +A+ ++ ++ ++R +G+ A+RK F R+ T +Y+ A + +
Sbjct: 388 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 447
Query: 402 QDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE 461
KD K A V E GLK F + YI +Y DFL +N++ +++LFE ++ + ++
Sbjct: 448 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 507
Query: 462 -VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPC 520
++++ FE G L+S +E+R E + L++ ++Y +D+
Sbjct: 508 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK---------LEEFTNKYKVLDVNYL 558
Query: 521 SSKDLDHLVR 530
+LD++VR
Sbjct: 559 QRLELDYMVR 568
>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
Length = 493
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/423 (21%), Positives = 188/423 (44%), Gaps = 50/423 (11%)
Query: 78 ATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGP 137
+ + LF RCL + LW YI ++RKV +KK + + ++F L + S
Sbjct: 32 SLESLFGRCLWKSYNLDLWMLYIEYVRKVSQKKF-----KLFEVYEFTLGQFENYWDSYG 86
Query: 138 IWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQL 197
++ EYI L + ++E R+ IR Y RA+ TP + +LWKD+ENFE +++
Sbjct: 87 LFKEYIEELGKI-----EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKIT 141
Query: 198 AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG 257
K ++ + + S+ Y++ + W++ RL+ E
Sbjct: 142 GKKIVGDTLPLFQSSFQRYQQIQPLIR--GWSVKNAA---------------RLIDLEME 184
Query: 258 NPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 317
N ++ R+ F + L ++ ++++ Y+ + G + A KV +R ++ +
Sbjct: 185 NGMKLGGRPHESRMHFIHNYILDSFFYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-MS 243
Query: 318 DSEMLRYAFAELEESRGAIAAAKKLY--------ESLLTDSVNTTALAHIQFIRFLRRTE 369
D L + + + K+ Y E + + ++ + H+ ++ +
Sbjct: 244 DGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV---LKKR 300
Query: 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL- 428
G+E RK F++ + HV++ A + + +N+F +GL + H + +L
Sbjct: 301 GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLK 357
Query: 429 -EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRK 487
E+ FL R+ D+ N RALF+R E++ +W ++E M G ++ ++ ++
Sbjct: 358 EEFFLFLLRIGDEENARALFKRL------EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411
Query: 488 EAL 490
+A+
Sbjct: 412 DAI 414
>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
Length = 493
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/410 (22%), Positives = 179/410 (43%), Gaps = 50/410 (12%)
Query: 78 ATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGP 137
+ + LF RCL + LW YI ++RKV +KK + + ++F L + S
Sbjct: 32 SLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKF-----KLYEVYEFTLGQFENYWDSYG 86
Query: 138 IWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQL 197
++ EYI ++E R+ IR Y RA+ TP + +LWKD+ENFE +++
Sbjct: 87 LYKEYIE-----EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKIT 141
Query: 198 AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG 257
K ++ + + S+ Y++ + W++ RL+ E
Sbjct: 142 GKKIVGDTLPIFQSSFQRYQQIQPLIR--GWSVKNAA---------------RLIDLEME 184
Query: 258 NPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 317
N ++ R+ F + L Y+ ++++ Y+ + G + A KV +R ++ +
Sbjct: 185 NGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-MS 243
Query: 318 DSEMLRYAFAELEESRGAIAAAKKLY--------ESLLTDSVNTTALAHIQFIRFLRRTE 369
D L + + + K+ Y E + + ++ + H+ ++ +
Sbjct: 244 DGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV---LKKR 300
Query: 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL- 428
G+E RK F++ + HV++ A + + +N+F +GL + H + +L
Sbjct: 301 GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLK 357
Query: 429 -EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLD 477
E+ FL R+ D+ N RALF+R E++ +W ++E M G ++
Sbjct: 358 EEFFLFLLRIGDEENARALFKRL------EKTSRMWDSMIEYEFMVGSME 401
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE 331
I TY + + H+PD + + A + GS+ A + AL+ P A ++
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316
Query: 332 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA-RKSPNFT 388
+G I A +LY L + A AH L++ ++ A ++ +A R SP F
Sbjct: 317 EQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 413 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 472
F +R H PA +L LS L NI + L ESIE + QM
Sbjct: 128 FRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGS--NKLRQM 185
Query: 473 -YGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQ 531
G K++Q S + + D L + + + W CS +D+L R
Sbjct: 186 PRGIFGKMPKLKQ--LNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR- 242
Query: 532 EWLVKNINKKVDKSALSNGPG 552
WL KN ++K SA +G G
Sbjct: 243 -WLNKN-SQKEQGSAKCSGSG 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,375,272
Number of Sequences: 62578
Number of extensions: 831978
Number of successful extensions: 1846
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1789
Number of HSP's gapped (non-prelim): 33
length of query: 774
length of database: 14,973,337
effective HSP length: 106
effective length of query: 668
effective length of database: 8,340,069
effective search space: 5571166092
effective search space used: 5571166092
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)